BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021017
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
           Mycobacterium Abscessus With Malate Bound
 pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
           Mycobacterium Abscessus With Malate Bound
          Length = 471

 Score = 30.0 bits (66), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 13/119 (10%)

Query: 53  KTTSGSAATMDTKSTSSVSAGFGNPPL---PTTVINTLLLYASRSNDSYHMTHSELKRIS 109
           +T SG+++ M+     +  A    PP+   P   +N     +  SND++  T + L    
Sbjct: 102 QTGSGTSSNMNANEVIASIAAQATPPVVVHPNDDVN----MSQSSNDTFP-TATHLAATE 156

Query: 110 DVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDE-----NRYYAAYFEELHPEID 163
             +R       +L   L  +   WK +  +GRT  +D       + +  Y  ++   I+
Sbjct: 157 AAVRDLIPALEYLQQALATKAKAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIE 215


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,371,478
Number of Sequences: 62578
Number of extensions: 312331
Number of successful extensions: 818
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 767
Number of HSP's gapped (non-prelim): 53
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)