BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021017
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FH92|IX15L_ARATH Protein IRX15-LIKE OS=Arabidopsis thaliana GN=IRX15-L PE=2 SV=1
Length = 317
Score = 490 bits (1261), Expect = e-138, Method: Compositional matrix adjust.
Identities = 226/314 (71%), Positives = 268/314 (85%), Gaps = 3/314 (0%)
Query: 5 NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGSAATMDT 64
N+NTKLIL+HPYIQKQ ++NRLWLLAFVSFFTIAFLLTL+YT +SI ++ ++AT+ +
Sbjct: 6 NTNTKLILVHPYIQKQTSTNRLWLLAFVSFFTIAFLLTLLYTTDSII--SSKNNSATVSS 63
Query: 65 KSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVF 124
S+V+ + LPTT IN +L YASRSNDSYHM++ E+K ISDV+R+CS PCN LVF
Sbjct: 64 AVNSAVTTATISQ-LPTTAINAMLHYASRSNDSYHMSYGEMKSISDVLRRCSPPCNLLVF 122
Query: 125 GLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184
GLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEI+VFDVQYTTK RE +EL+++ K
Sbjct: 123 GLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIEVFDVQYTTKAREARELVSAVK 182
Query: 185 EQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAG 244
E RNEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVIL+DGPRGDG D PGRMS IFTA
Sbjct: 183 EAARNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVILVDGPRGDGGDVPGRMSSIFTAA 242
Query: 245 VLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEF 304
VLARSKKGGNPKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VLEKMD+NS +F
Sbjct: 243 VLARSKKGGNPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLEKMDKNSTQF 302
Query: 305 CRNNNASSRASASS 318
CR S+ S
Sbjct: 303 CRGRKKKRSVSSPS 316
>sp|Q9SNE5|IRX15_ARATH Protein IRREGULAR XYLEM 15 OS=Arabidopsis thaliana GN=IRX15 PE=2
SV=1
Length = 322
Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust.
Identities = 228/322 (70%), Positives = 264/322 (81%), Gaps = 5/322 (1%)
Query: 1 MKNS--NSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESISLKTTSGS 58
MKN N+NTKLILLHPYIQKQ ++ RLWLLAFVSFFTI FLLTL+YTR++I K TS +
Sbjct: 1 MKNGSGNTNTKLILLHPYIQKQTSTTRLWLLAFVSFFTIVFLLTLLYTRDTIPSKNTSVA 60
Query: 59 AATMDTK---STSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKC 115
AA ST S S+ N LPT+ IN LL YASRSNDS+HM++ E+K ISDV+R+C
Sbjct: 61 AAVAAVVTGGSTPSASSPISNSNLPTSAINALLHYASRSNDSFHMSYGEMKSISDVLRRC 120
Query: 116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRE 175
+ PCN LVFGLT ETLLWK+LNHNGRTVFI+ENRYYAAYFEE+HPEIDVFDVQYTTK E
Sbjct: 121 APPCNLLVFGLTHETLLWKSLNHNGRTVFIEENRYYAAYFEEIHPEIDVFDVQYTTKAHE 180
Query: 176 TKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPG 235
EL+ +AKE NEC+PVQNLLFS+CKLG+NDLPNHVY+VDWDVI +DGPRGD +GPG
Sbjct: 181 AGELVTAAKEAAGNECRPVQNLLFSDCKLGLNDLPNHVYDVDWDVIFVDGPRGDAHEGPG 240
Query: 236 RMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE 295
RMS IFTA VLARSKKGG PKTH+FVHDYYR VER+CGDEFLC+ENLVE ND+LAH+VL+
Sbjct: 241 RMSSIFTAAVLARSKKGGTPKTHVFVHDYYRDVERLCGDEFLCRENLVESNDLLAHYVLD 300
Query: 296 KMDENSFEFCRNNNASSRASAS 317
KMD+NS +FC S +S S
Sbjct: 301 KMDKNSTKFCNGRKKRSVSSLS 322
>sp|Q9LQ32|GXM3_ARATH Glucuronoxylan 4-O-methyltransferase 3 OS=Arabidopsis thaliana
GN=GXM3 PE=1 SV=1
Length = 297
Score = 159 bits (403), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 83/216 (38%), Positives = 130/216 (60%), Gaps = 7/216 (3%)
Query: 79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
+P ++ + L+ Y + SN + T E+ V+ K SPCNFLVFGL ++L+W +LNH
Sbjct: 69 MPLSLSDALVHYVT-SNVTPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNH 126
Query: 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198
GRT+FI+E++ + A + P ++ + V Y TK++++ +L+ + + EC+ V +
Sbjct: 127 GGRTLFIEEDQAWIAIVTKKFPNLESYHVVYDTKVKDSDKLMELGRSE---ECRSVSDPR 183
Query: 199 FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTH 258
S+C L + D P YE WD+I++D P G + PGRMS I+TAG+LAR+++ G +T
Sbjct: 184 NSKCDLALKDFPADFYETKWDLIMVDAPTGYHEEAPGRMSAIYTAGLLARNREDG--ETD 241
Query: 259 IFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVL 294
+FVHD R VE FLCK + E N L HF +
Sbjct: 242 VFVHDVNRPVEDEFSATFLCKGYMREQNGRLRHFTI 277
>sp|Q6NMK1|GXM1_ARATH Glucuronoxylan 4-O-methyltransferase 1 OS=Arabidopsis thaliana
GN=GXM1 PE=1 SV=1
Length = 282
Score = 151 bits (382), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 88/261 (33%), Positives = 144/261 (55%), Gaps = 10/261 (3%)
Query: 41 LTLIYTRESISLKTTSGSAATMDTKSTSSVSAGFGNPPLPTTVINTLLLYASRSNDSYHM 100
L LI+ S +L ++ +T+ST +G N LP ++ L+ Y++ S +
Sbjct: 22 LILIFIVRS-TLTSSQEHQTPQETRSTRC--SGACNK-LPRSLAQALIHYST-SVITPQQ 76
Query: 101 THSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP 160
T E+ S V+ K SPCNFLVFGL ++L+W +LN+ GRTVF++E+ + + P
Sbjct: 77 TLKEIAVSSRVLGK-KSPCNFLVFGLGHDSLMWSSLNYGGRTVFLEEDEAWIKQIKRRFP 135
Query: 161 EIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDV 220
++ + V Y +K+ + LI K EC + + +S C+L + LP +YE WD+
Sbjct: 136 MLESYHVTYDSKVNQADNLIEVGKGP---ECTAIGDPRYSMCQLALKGLPAEIYETGWDL 192
Query: 221 ILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKE 280
I++D P G + PGRM+ I+TAG++AR++K G +T +FVHD R +E FLC+
Sbjct: 193 IMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGG-ETDVFVHDVNREIEDKFSKAFLCEG 251
Query: 281 NLVEFNDMLAHFVLEKMDENS 301
+ + L HF++ + S
Sbjct: 252 YMKKQEGRLRHFIIPSYRDGS 272
>sp|Q9T0F7|GXM2_ARATH Glucuronoxylan 4-O-methyltransferase 2 OS=Arabidopsis thaliana
GN=GXM2 PE=1 SV=1
Length = 290
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/214 (37%), Positives = 124/214 (57%), Gaps = 6/214 (2%)
Query: 79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH 138
LPT++ + L+ Y + S + T E+ V+ K SPCNFLVFGL ++L+W +LNH
Sbjct: 61 LPTSLSDALVHYVT-SEITPQQTFDEVSVSKRVLDK-KSPCNFLVFGLGHDSLMWASLNH 118
Query: 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198
GRT+F++E+ + + P ++ + V Y TK++++ +L+ + + +CK V +
Sbjct: 119 GGRTLFLEEDEAWIETVTKKFPNLESYHVVYDTKVKDSNKLMELKRTE---DCKAVSDPR 175
Query: 199 FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTH 258
S+C L + P VYE WDVI++D P G + PGRMS I+TAG+LAR++ G +T
Sbjct: 176 DSKCALSLKGFPADVYETQWDVIMVDAPTGYHDEAPGRMSAIYTAGLLARNRYDGG-ETD 234
Query: 259 IFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHF 292
+FVHD R VE FLC + E L HF
Sbjct: 235 VFVHDINRPVEDEFSVAFLCGGYMKEQQGRLRHF 268
>sp|A4XQL9|Y867_PSEMY UPF0042 nucleotide-binding protein Pmen_0867 OS=Pseudomonas
mendocina (strain ymp) GN=Pmen_0867 PE=3 SV=1
Length = 285
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 16/165 (9%)
Query: 50 ISLKTTSGSAATMDTKS------TSSVSAGFGNPPLPTTVINT--LLLYASRSNDSYHMT 101
+S ++ SG + +D ++ AG ++NT LL + S D+ ++
Sbjct: 6 VSGRSGSGKSTALDVLEDNGFYCIDNLPAGLLPDLAERALLNTEMLLPQVAVSIDARNL- 64
Query: 102 HSELKRISDV---IRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEE- 157
S L+R ++ +R+ + C+ L ETLL + R DENR A +
Sbjct: 65 QSHLRRFPELLEQVRQRNIRCDILYLDADDETLLKRFSETRRRHPLTDENRSLAEAIADE 124
Query: 158 ---LHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLF 199
L P +D+ D++ T +L S K ++ N+ +P LF
Sbjct: 125 TQVLAPIVDLADLKIDTTHLNLYQLRDSLKLRLLNQPEPGTAFLF 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,449,741
Number of Sequences: 539616
Number of extensions: 5162022
Number of successful extensions: 12927
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 12907
Number of HSP's gapped (non-prelim): 20
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)