Query 021017
Match_columns 318
No_of_seqs 96 out of 98
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 06:57:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021017.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021017hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01627 A_thal_3515 uncharac 100.0 5E-121 1E-125 828.3 21.1 224 77-305 1-225 (225)
2 PF04669 Polysacc_synt_4: Poly 100.0 8.7E-87 1.9E-91 594.3 -12.4 186 103-292 1-190 (190)
3 COG0421 SpeE Spermidine syntha 95.4 0.14 3E-06 49.0 10.2 156 103-295 63-234 (282)
4 PLN02823 spermine synthase 94.6 0.3 6.6E-06 47.6 10.4 98 116-247 102-203 (336)
5 PLN02781 Probable caffeoyl-CoA 93.8 0.61 1.3E-05 42.6 10.0 118 80-228 29-155 (234)
6 PF01596 Methyltransf_3: O-met 93.7 0.58 1.3E-05 42.5 9.5 146 80-266 7-158 (205)
7 PLN02476 O-methyltransferase 93.4 1.1 2.4E-05 42.9 11.4 120 80-230 81-207 (278)
8 PRK01581 speE spermidine synth 92.7 1.3 2.8E-05 44.5 11.2 142 115-296 148-312 (374)
9 TIGR00417 speE spermidine synt 92.6 0.92 2E-05 41.9 9.4 47 116-162 71-119 (270)
10 PF01564 Spermine_synth: Sperm 92.3 0.32 6.9E-06 44.9 5.9 105 109-249 69-177 (246)
11 PRK00811 spermidine synthase; 90.9 1.5 3.3E-05 41.1 8.9 47 116-162 75-123 (283)
12 PLN02366 spermidine synthase 90.4 2.6 5.7E-05 40.6 10.2 145 116-296 90-252 (308)
13 PRK04457 spermidine synthase; 88.0 6.9 0.00015 36.4 10.9 44 116-159 65-110 (262)
14 PLN02589 caffeoyl-CoA O-methyl 87.1 3.2 6.9E-05 39.0 8.1 121 81-231 43-170 (247)
15 PRK03612 spermidine synthase; 86.5 4.4 9.6E-05 41.4 9.4 42 116-157 296-339 (521)
16 cd02042 ParA ParA and ParB of 77.0 3.1 6.6E-05 32.1 3.3 14 218-231 40-53 (104)
17 PF10718 Ycf34: Hypothetical c 69.4 1.7 3.7E-05 35.3 0.2 31 202-236 41-71 (77)
18 COG0003 ArsA Predicted ATPase 61.3 1.8 4E-05 42.2 -1.1 26 204-229 112-138 (322)
19 PRK08618 ornithine cyclodeamin 54.5 36 0.00079 32.5 6.3 121 96-226 106-246 (325)
20 COG4122 Predicted O-methyltran 53.2 71 0.0015 30.0 7.8 118 80-232 24-147 (219)
21 TIGR03587 Pse_Me-ase pseudamin 48.5 90 0.002 28.0 7.5 68 95-162 21-90 (204)
22 PF13659 Methyltransf_26: Meth 48.1 22 0.00047 27.5 3.1 42 120-161 3-45 (117)
23 cd05013 SIS_RpiR RpiR-like pro 46.5 1.4E+02 0.003 23.2 7.6 79 104-185 2-85 (139)
24 PRK10909 rsmD 16S rRNA m(2)G96 45.8 1E+02 0.0022 28.0 7.5 54 105-158 41-95 (199)
25 cd02035 ArsA ArsA ATPase funct 45.0 5.5 0.00012 35.4 -0.7 23 206-228 102-124 (217)
26 PF06564 YhjQ: YhjQ protein; 44.7 12 0.00025 35.6 1.3 16 216-231 116-131 (243)
27 PF09954 DUF2188: Uncharacteri 44.7 22 0.00049 26.2 2.6 51 217-272 10-60 (62)
28 PRK00377 cbiT cobalt-precorrin 43.5 89 0.0019 27.3 6.6 59 99-158 22-84 (198)
29 cd02038 FleN-like FleN is a me 43.1 36 0.00078 28.2 3.9 14 218-231 45-58 (139)
30 cd03110 Fer4_NifH_child This p 42.7 15 0.00032 31.1 1.5 16 216-231 91-106 (179)
31 PRK15128 23S rRNA m(5)C1962 me 42.1 1.5E+02 0.0031 29.8 8.6 89 109-227 212-303 (396)
32 cd00550 ArsA_ATPase Oxyanion-t 42.0 6.5 0.00014 36.2 -0.8 13 215-227 122-134 (254)
33 PRK09331 Sep-tRNA:Cys-tRNA syn 41.6 1.9E+02 0.0042 27.7 9.0 118 117-244 101-235 (387)
34 cd06451 AGAT_like Alanine-glyo 41.2 1.9E+02 0.004 26.8 8.6 73 75-150 6-84 (356)
35 KOG4417 Predicted endonuclease 40.7 15 0.00032 35.5 1.4 24 207-230 105-133 (261)
36 PF13479 AAA_24: AAA domain 40.2 31 0.00067 30.8 3.3 30 117-150 2-34 (213)
37 KOG3022 Predicted ATPase, nucl 40.0 18 0.00039 35.9 1.9 71 213-296 149-227 (300)
38 TIGR00345 arsA arsenite-activa 39.6 16 0.00035 34.3 1.4 26 216-241 111-140 (284)
39 TIGR03127 RuMP_HxlB 6-phospho 39.6 2.4E+02 0.0052 24.1 10.7 80 99-185 14-97 (179)
40 PRK10892 D-arabinose 5-phospha 39.4 1.3E+02 0.0027 28.3 7.3 85 99-185 30-119 (326)
41 COG1192 Soj ATPases involved i 36.3 20 0.00044 32.1 1.5 14 216-229 118-131 (259)
42 PRK05703 flhF flagellar biosyn 35.8 1.6E+02 0.0035 29.8 7.8 24 217-241 299-322 (424)
43 PF02374 ArsA_ATPase: Anion-tr 35.3 20 0.00044 34.3 1.4 26 215-240 124-153 (305)
44 TIGR02469 CbiT precorrin-6Y C5 34.8 1.7E+02 0.0037 22.3 6.3 58 100-158 2-62 (124)
45 TIGR01969 minD_arch cell divis 34.6 23 0.00049 31.0 1.5 17 216-232 107-123 (251)
46 COG4858 Uncharacterized membra 34.2 68 0.0015 30.6 4.6 35 4-50 89-123 (226)
47 cd01120 RecA-like_NTPases RecA 34.1 1E+02 0.0022 24.2 5.0 53 217-272 85-144 (165)
48 PHA02663 hypothetical protein; 34.0 27 0.00059 31.5 1.9 20 231-250 82-102 (172)
49 PF10476 DUF2448: Protein of u 33.0 1.5E+02 0.0033 28.1 6.6 26 25-50 23-49 (204)
50 COG0489 Mrp ATPases involved i 32.8 12 0.00026 35.1 -0.5 24 207-230 156-179 (265)
51 COG4951 Uncharacterized protei 32.3 35 0.00076 34.1 2.5 63 77-148 175-244 (361)
52 cd03111 CpaE_like This protein 32.0 30 0.00065 27.6 1.7 22 219-249 44-65 (106)
53 PF06898 YqfD: Putative stage 32.0 45 0.00098 33.1 3.2 38 99-148 139-176 (385)
54 PHA02518 ParA-like protein; Pr 31.8 25 0.00055 29.9 1.3 13 217-229 76-88 (211)
55 TIGR01968 minD_bact septum sit 31.0 29 0.00062 30.5 1.6 15 217-231 111-125 (261)
56 cd01078 NAD_bind_H4MPT_DH NADP 30.8 3.5E+02 0.0077 23.4 9.1 116 118-237 28-162 (194)
57 PF02254 TrkA_N: TrkA-N domain 30.8 95 0.0021 24.1 4.3 105 121-274 1-107 (116)
58 PF02310 B12-binding: B12 bind 30.6 2.6E+02 0.0057 21.8 7.1 64 102-185 14-77 (121)
59 PF01656 CbiA: CobQ/CobB/MinD/ 30.2 28 0.0006 29.0 1.3 15 218-232 95-109 (195)
60 PRK01294 lipase chaperone; Pro 30.0 63 0.0014 32.0 3.8 23 231-253 151-173 (336)
61 PF12847 Methyltransf_18: Meth 29.4 1.3E+02 0.0029 22.8 4.9 41 119-159 3-45 (112)
62 cd03287 ABC_MSH3_euk MutS3 hom 29.4 2.9E+02 0.0063 25.4 7.8 70 102-172 95-177 (222)
63 PF04072 LCM: Leucine carboxyl 28.7 99 0.0021 26.9 4.5 44 109-152 70-113 (183)
64 PF07652 Flavi_DEAD: Flaviviru 28.3 34 0.00073 30.7 1.5 39 134-175 28-66 (148)
65 PF09243 Rsm22: Mitochondrial 28.0 2.4E+02 0.0051 26.6 7.1 21 117-137 33-53 (274)
66 TIGR00563 rsmB ribosomal RNA s 27.9 60 0.0013 32.2 3.3 32 132-163 354-391 (426)
67 PRK15482 transcriptional regul 27.4 3.7E+02 0.0081 24.8 8.2 84 99-185 119-207 (285)
68 cd02037 MRP-like MRP (Multiple 27.3 34 0.00074 28.8 1.3 15 216-230 66-80 (169)
69 PF12273 RCR: Chitin synthesis 27.2 62 0.0013 27.2 2.8 13 31-43 8-20 (130)
70 TIGR00347 bioD dethiobiotin sy 26.7 40 0.00086 28.2 1.6 30 216-249 98-127 (166)
71 PF12273 RCR: Chitin synthesis 26.5 41 0.0009 28.2 1.7 19 27-46 2-20 (130)
72 PRK11670 antiporter inner memb 25.9 40 0.00087 33.2 1.7 15 217-231 215-229 (369)
73 TIGR03371 cellulose_yhjQ cellu 25.6 36 0.00079 29.8 1.2 14 218-231 115-128 (246)
74 PF13840 ACT_7: ACT domain ; P 25.2 20 0.00043 26.7 -0.4 32 215-249 3-34 (65)
75 cd02036 MinD Bacterial cell di 24.2 48 0.001 27.2 1.7 12 219-230 64-75 (179)
76 COG1278 CspC Cold shock protei 23.9 49 0.0011 26.2 1.5 31 255-295 23-53 (67)
77 TIGR03202 pucB xanthine dehydr 23.7 85 0.0018 26.8 3.1 30 234-267 78-107 (190)
78 PRK03522 rumB 23S rRNA methylu 23.7 3.1E+02 0.0068 26.0 7.1 48 109-159 166-215 (315)
79 PRK11337 DNA-binding transcrip 23.6 5.5E+02 0.012 23.7 8.6 84 99-185 124-212 (292)
80 PRK02947 hypothetical protein; 23.4 6E+02 0.013 23.6 10.0 84 102-185 23-131 (246)
81 TIGR01618 phage_P_loop phage n 23.1 2.3E+02 0.0051 26.4 6.0 64 116-184 10-76 (220)
82 COG1105 FruK Fructose-1-phosph 23.0 2.8E+02 0.0061 27.6 6.8 90 96-185 107-209 (310)
83 PRK10037 cell division protein 22.9 49 0.0011 29.9 1.6 15 216-230 116-130 (250)
84 COG1737 RpiR Transcriptional r 22.7 6.3E+02 0.014 23.8 8.9 103 80-185 93-202 (281)
85 cd01399 GlcN6P_deaminase GlcN6 22.7 1.2E+02 0.0026 26.8 3.9 30 100-130 99-128 (232)
86 TIGR03029 EpsG chain length de 22.5 50 0.0011 30.0 1.5 49 102-150 84-143 (274)
87 PRK09620 hypothetical protein; 21.9 2.7E+02 0.0059 25.8 6.2 75 140-228 124-200 (229)
88 cd01983 Fer4_NifH The Fer4_Nif 21.9 61 0.0013 23.1 1.6 13 219-231 35-47 (99)
89 TIGR02964 xanthine_xdhC xanthi 21.8 1.2E+02 0.0025 28.5 3.8 49 115-165 97-147 (246)
90 CHL00175 minD septum-site dete 21.7 52 0.0011 30.0 1.5 14 217-230 126-139 (281)
91 TIGR02876 spore_yqfD sporulati 21.6 90 0.002 31.2 3.2 20 128-147 152-171 (382)
92 cd06453 SufS_like Cysteine des 21.6 6.6E+02 0.014 23.4 9.1 45 201-248 175-220 (373)
93 KOG3970 Predicted E3 ubiquitin 21.6 92 0.002 30.6 3.2 24 24-47 251-274 (299)
94 PF12317 IFT46_B_C: Intraflage 21.6 69 0.0015 30.5 2.3 36 149-184 119-154 (214)
95 PF04250 DUF429: Protein of un 21.6 67 0.0014 28.5 2.1 19 217-236 41-59 (209)
96 PRK00090 bioD dithiobiotin syn 21.4 72 0.0016 28.0 2.3 15 216-230 102-116 (222)
97 cd02034 CooC The accessory pro 21.2 84 0.0018 26.0 2.5 32 199-230 64-99 (116)
98 PRK06067 flagellar accessory p 20.9 4.9E+02 0.011 23.1 7.4 84 212-299 115-205 (234)
99 cd01080 NAD_bind_m-THF_DH_Cycl 20.9 3.9E+02 0.0084 23.7 6.7 30 118-147 44-75 (168)
100 PRK02289 4-oxalocrotonate taut 20.9 62 0.0013 23.6 1.5 47 220-267 3-49 (60)
101 PHA02913 TGF-beta-like protein 20.8 50 0.0011 30.4 1.2 23 207-231 80-103 (172)
102 PRK07340 ornithine cyclodeamin 20.5 3.6E+02 0.0078 25.8 6.9 116 100-225 108-240 (304)
103 PF13847 Methyltransf_31: Meth 20.4 2.1E+02 0.0045 23.6 4.7 107 117-265 3-112 (152)
104 cd05015 SIS_PGI_1 Phosphogluco 20.3 5.6E+02 0.012 22.0 9.7 71 100-170 2-83 (158)
105 PRK13869 plasmid-partitioning 20.2 55 0.0012 32.6 1.4 52 99-150 86-161 (405)
No 1
>TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627. This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069).
Probab=100.00 E-value=5.3e-121 Score=828.33 Aligned_cols=224 Identities=46% Similarity=0.817 Sum_probs=217.6
Q ss_pred CCCCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhh
Q 021017 77 PPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFE 156 (318)
Q Consensus 77 ~~lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~ 156 (318)
+++|++|++||||||| ||+|||||.+||+++++||+| ||||||||||||||||||++|||||||||||||++||++++
T Consensus 1 t~~p~~~a~AlvhYat-sn~t~q~s~~Ei~~~~~VL~~-raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~ 78 (225)
T TIGR01627 1 TTFPLSPADALQHYRA-SNGPTALMEKELKLLSDVLTR-RSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAE 78 (225)
T ss_pred CCCchhHHHHHHHHHh-cCCCcccCHHHHHHHHHHHHh-cCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHh
Confidence 4799999999999998 999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred hhCCCceeEEEEeecccccHHHHHHHHhhhcCCCCccccccc-ccccccccCCCCcccccccccEEEEcCCCCCCCCCCC
Q 021017 157 ELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL-FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPG 235 (318)
Q Consensus 157 ~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~-~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPG 235 (318)
++||+||+|+|+|+|+++||++||+.+|+ +++|+|+|+.+ +|+|||||||||+||||++|||||||||+||+||+||
T Consensus 79 ~~~p~leay~V~Y~t~~~~a~~LL~~~~~--~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPG 156 (225)
T TIGR01627 79 VNPPNTRIYSVKYHTKVRNAYNLLQHARA--NPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPG 156 (225)
T ss_pred hcCCcceEEEEEeehhhhhHHHHHHHhcc--CCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCc
Confidence 99999999999999999999999999995 69999999765 8999999999999999999999999999999999999
Q ss_pred CcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhhhhhhccccccccccCceeeEEeecCCCCccccc
Q 021017 236 RMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLEKMDENSFEFC 305 (318)
Q Consensus 236 RM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~grL~HF~I~~~~~~~~~FC 305 (318)
||+||||||||||+|++| ++||||||||||+|||+||+||||++|||+++||||||+||++..++++||
T Consensus 157 RM~aIyTAav~AR~r~~g-~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~~~FC 225 (225)
T TIGR01627 157 RMSSIYTAAVLARKGSSG-STTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNASRAFC 225 (225)
T ss_pred chhhHHHHHHHHHhccCC-CCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCCCCCC
Confidence 999999999999999977 579999999999999999999999999999999999999998888888999
No 2
>PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins. ; PDB: 2JYN_A.
Probab=100.00 E-value=8.7e-87 Score=594.35 Aligned_cols=186 Identities=48% Similarity=0.910 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCCC-ccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHH
Q 021017 103 SELKRISDVIRKCSSP-CNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIA 181 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raP-CNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~ 181 (318)
.||+.+++||++ ++| |||||||||||||||+++||||||||||||++|+++++++||++++|+|+|+|++.++++||+
T Consensus 1 ~E~~~a~~~l~~-~~p~cNlLvfgl~~~sl~wt~ln~~GrTvFlee~~~~~~~~~~~fP~l~~~~v~y~t~~~~a~~Ll~ 79 (190)
T PF04669_consen 1 IEIAWAAKVLQH-REPYCNLLVFGLGPDSLLWTSLNDGGRTVFLEEDPAWYSSFRKRFPDLEAYHVRYRTKVIDADELLS 79 (190)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHS--TTS--SSTTHHH-----------HHHHHHHH-TTT----SHHHHHB--STTTSS
T ss_pred CcHHHHHHHHHH-hCCCceEEEEeCCCccccchhcCcCcccchhhHHHHHHHHHHHHCcCCcccCcccccccCCHHHHhC
Confidence 599999999999 677 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCc-ceEE
Q 021017 182 SAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPK-THIF 260 (318)
Q Consensus 182 ~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~-TdVf 260 (318)
.+|+ ++|+|+|++++|+|||||+|||++||+++|||||||||+||+|+|||||+||||||||||+|++|..+ ||||
T Consensus 80 ~~~~---~~C~~~~~~~~s~C~lal~~LP~~vy~~~WDvi~vd~p~g~~~daPGRM~aIytag~LaR~~~~~~~t~t~Vf 156 (190)
T PF04669_consen 80 KARS---PECRPVQNLRFSECKLALNDLPNEVYKEKWDVIFVDAPRGYVPDAPGRMAAIYTAGVLARARASGGYTETDVF 156 (190)
T ss_dssp HH------------------------------HHHHH-HHHHHHHTTT-S---------TTS-EEEESBTTS-S-TTEEE
T ss_pred cccc---ccccccccccccccccccccccchhhhhhHHHHHHHcCCCCCCccchhhhhhccHHHHhhccCCCCCCCCEEE
Confidence 9995 89999999999999999999999999999999999999999999999999999999999999876333 6999
Q ss_pred EecCCchHHHhhhhhhccccccccccCc--eeeE
Q 021017 261 VHDYYRHVERMCGDEFLCKENLVEFNDM--LAHF 292 (318)
Q Consensus 261 VHDvdR~VE~~~s~eFLC~~nlv~~~gr--L~HF 292 (318)
||||||+|||+||+||||+||+++++|+ ||||
T Consensus 157 Vhdv~R~vE~~~s~eFLc~e~l~~~~G~~~l~hF 190 (190)
T PF04669_consen 157 VHDVDRPVEKWFSEEFLCIEILRNREGRNDLWHF 190 (190)
T ss_dssp E-HH----------HHHHHHHHHHHTTTTGGG--
T ss_pred EEcccccccchhHHHHHHHHHHHhCCCchhhccC
Confidence 9999999999999999999999999999 9999
No 3
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.42 E-value=0.14 Score=49.04 Aligned_cols=156 Identities=20% Similarity=0.296 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce--eEEEEeecccccHHH
Q 021017 103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID--VFDVQYTTKIRETKE 178 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le--ay~V~Y~T~~~ea~~ 178 (318)
-|.-+-...+.+ ..|-+.||-|+|--+.++..+.|. =|-+..|=|+..|+-.++-.|... ++|=+-.-.+.|+.+
T Consensus 63 hEml~h~~~~ah-~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~ 141 (282)
T COG0421 63 HEMLAHVPLLAH-PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVE 141 (282)
T ss_pred HHHHHhchhhhC-CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHH
Confidence 344455556665 667799999999999999999998 589999999999999998888775 554444455577777
Q ss_pred HHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHh---hh-cCCCC
Q 021017 179 LIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA---RS-KKGGN 254 (318)
Q Consensus 179 LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmA---R~-r~~g~ 254 (318)
.|+... -++|||++|.-- |+.|| .+.||--..- |. +.+|-
T Consensus 142 ~v~~~~-------------------------------~~fDvIi~D~td---p~gp~--~~Lft~eFy~~~~~~L~~~Gi 185 (282)
T COG0421 142 FLRDCE-------------------------------EKFDVIIVDSTD---PVGPA--EALFTEEFYEGCRRALKEDGI 185 (282)
T ss_pred HHHhCC-------------------------------CcCCEEEEcCCC---CCCcc--cccCCHHHHHHHHHhcCCCcE
Confidence 775433 169999999766 44444 4566665443 33 22332
Q ss_pred Ccce---EEEe-----cCCchHHHhhhhhhccccccccccCceeeEEee
Q 021017 255 PKTH---IFVH-----DYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE 295 (318)
Q Consensus 255 ~~Td---VfVH-----DvdR~VE~~~s~eFLC~~nlv~~~grL~HF~I~ 295 (318)
-.+- -|.| +..|.++++|+.-=.+.-.+-.-.+..|-|.+.
T Consensus 186 ~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ipt~~~g~~~f~~~ 234 (282)
T COG0421 186 FVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIPTYPSGFWGFIVA 234 (282)
T ss_pred EEEecCCcccchHHHHHHHHHHHhhccccccceeccceecCCceEEEEe
Confidence 1111 4444 688999999998888888877778889999994
No 4
>PLN02823 spermine synthase
Probab=94.63 E-value=0.3 Score=47.59 Aligned_cols=98 Identities=16% Similarity=0.270 Sum_probs=66.3
Q ss_pred CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-eE-EEEeecccccHHHHHHHHhhhcCCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-VF-DVQYTTKIRETKELIASAKEQIRNEC 191 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~~~~C 191 (318)
..|.+.||.|+|--++....+.|. .+-+.+|=|+.-++-+++-+|... ++ +=+-+-.+.|+.+.|+..
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~-------- 173 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKR-------- 173 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhC--------
Confidence 579999999999888887777764 467999999999999988776421 11 122233446666666311
Q ss_pred cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHh
Q 021017 192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLA 247 (318)
Q Consensus 192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmA 247 (318)
+-+||||++|.+. |...|-....||.-.+.
T Consensus 174 -----------------------~~~yDvIi~D~~d---p~~~~~~~~Lyt~eF~~ 203 (336)
T PLN02823 174 -----------------------DEKFDVIIGDLAD---PVEGGPCYQLYTKSFYE 203 (336)
T ss_pred -----------------------CCCccEEEecCCC---ccccCcchhhccHHHHH
Confidence 1159999999875 43333335688866544
No 5
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=93.84 E-value=0.61 Score=42.58 Aligned_cols=118 Identities=14% Similarity=0.130 Sum_probs=75.0
Q ss_pred CHHHHHHHhhhhccCC--CCcCC--CHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHhh-hccCCcEEEecCChhHH
Q 021017 80 PTTVINTLLLYASRSN--DSYHM--THSELKRISDVIRKCSSPCNFLVFGL--TQETLLWKA-LNHNGRTVFIDENRYYA 152 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn--~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~a-LN~gGrTvFLeEd~~~i 152 (318)
..++++.|.+||- .+ ..++| +..+-+.+ ..|.+...|-++|-.|- |..++.++. +..+|+-+.+|-|++++
T Consensus 29 ~~~~l~~~~~~a~-~~~~~~~~~~v~~~~g~~L-~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~ 106 (234)
T PLN02781 29 EHELLKELREATV-QKYGNLSEMEVPVDEGLFL-SMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAY 106 (234)
T ss_pred CCHHHHHHHHHHH-hccccCcccccCHHHHHHH-HHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHH
Confidence 3467888888885 34 23443 55444444 44445578999999985 554454544 34579999999999999
Q ss_pred HHhhhhCC--CceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCC
Q 021017 153 AYFEELHP--EIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRG 228 (318)
Q Consensus 153 ~~~~~~~p--~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~G 228 (318)
+.+++..- +++ ..| +-...+|.+.|....++ .+ +-.+|+|.+|++++
T Consensus 107 ~~A~~n~~~~gl~-~~i--~~~~gda~~~L~~l~~~-~~-------------------------~~~fD~VfiDa~k~ 155 (234)
T PLN02781 107 EVGLEFIKKAGVD-HKI--NFIQSDALSALDQLLNN-DP-------------------------KPEFDFAFVDADKP 155 (234)
T ss_pred HHHHHHHHHcCCC-CcE--EEEEccHHHHHHHHHhC-CC-------------------------CCCCCEEEECCCHH
Confidence 88876532 332 223 33456777777554321 00 12689999999873
No 6
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=93.66 E-value=0.58 Score=42.52 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=91.9
Q ss_pred CHHHHHHHhhhhccCCCCcCCCH-HHHHHHHHHHHhcCCCccEEEecC--CchhhhHh-hhccCCcEEEecCChhHHHHh
Q 021017 80 PTTVINTLLLYASRSNDSYHMTH-SELKRISDVIRKCSSPCNFLVFGL--TQETLLWK-ALNHNGRTVFIDENRYYAAYF 155 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tpqqt~-~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTvFLeEd~~~i~~~ 155 (318)
.+++++.|-+++......++|.. .|...+...|.+...|-|.|-+|- |.-++.|+ ++-.+|+-+=+|-|+++++.+
T Consensus 7 ~~~~l~~l~~~t~~~~~~~~~~i~~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A 86 (205)
T PF01596_consen 7 EPELLKELREFTRENQGLPQMSISPETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIA 86 (205)
T ss_dssp STHHHHHHHHHHHCTTTTGGGSHHHHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcCCCCCccCHHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHH
Confidence 56788999999973333555533 333444445444577999999975 77777776 456689999999999998877
Q ss_pred hhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCC
Q 021017 156 EELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDG 233 (318)
Q Consensus 156 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~pea 233 (318)
++.. -+++ .+|++ ...+|.+.|.....+ . + +-.+|+|.|||.++-++
T Consensus 87 ~~~~~~ag~~-~~I~~--~~gda~~~l~~l~~~-~---------------------~----~~~fD~VFiDa~K~~y~-- 135 (205)
T PF01596_consen 87 RENFRKAGLD-DRIEV--IEGDALEVLPELAND-G---------------------E----EGQFDFVFIDADKRNYL-- 135 (205)
T ss_dssp HHHHHHTTGG-GGEEE--EES-HHHHHHHHHHT-T---------------------T----TTSEEEEEEESTGGGHH--
T ss_pred HHHHHhcCCC-CcEEE--EEeccHhhHHHHHhc-c---------------------C----CCceeEEEEcccccchh--
Confidence 7532 2332 23333 347888888765531 0 0 34699999999886544
Q ss_pred CCCcchhhhHHHHhhhcCCCCCcceEEEecCCc
Q 021017 234 PGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYR 266 (318)
Q Consensus 234 PGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR 266 (318)
..|-.. +-.-|++| =+++.++-.
T Consensus 136 -----~y~~~~-~~ll~~gg----vii~DN~l~ 158 (205)
T PF01596_consen 136 -----EYFEKA-LPLLRPGG----VIIADNVLW 158 (205)
T ss_dssp -----HHHHHH-HHHEEEEE----EEEEETTTG
T ss_pred -----hHHHHH-hhhccCCe----EEEEccccc
Confidence 344433 34444443 467777654
No 7
>PLN02476 O-methyltransferase
Probab=93.43 E-value=1.1 Score=42.94 Aligned_cols=120 Identities=12% Similarity=0.097 Sum_probs=75.5
Q ss_pred CHHHHHHHhhhhccCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEecCCch-hhhHhhh--ccCCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYASRSNDSY--HMTHSELKRISDVIRKCSSPCNFLVFGLTQE-TLLWKAL--NHNGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tp--qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d-sllW~aL--N~gGrTvFLeEd~~~i~~ 154 (318)
++++++.|.+||. .+.-+ +.+.++-+.+..+++ ...|=++|=.|-+-. |.+|.+. ..+|+-+=+|-|+++++.
T Consensus 81 ~~~~L~~l~e~a~-~~~~~~~~v~~~~g~lL~~L~~-~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~ 158 (278)
T PLN02476 81 EPKILRQLREETS-KMRGSQMQVSPDQAQLLAMLVQ-ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEV 158 (278)
T ss_pred CCHHHHHHHHHHH-hccCCccccCHHHHHHHHHHHH-hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 4456666777775 34223 345555555555555 478999999976333 3455544 568999999999999887
Q ss_pred hhhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCC
Q 021017 155 FEELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDG 230 (318)
Q Consensus 155 ~~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~ 230 (318)
+++.. -+++ ..|.. ...+|.+.|....++ . .+-.+|+|.|||+++-+
T Consensus 159 Ar~n~~~aGl~-~~I~l--i~GdA~e~L~~l~~~-~-------------------------~~~~FD~VFIDa~K~~Y 207 (278)
T PLN02476 159 AKRYYELAGVS-HKVNV--KHGLAAESLKSMIQN-G-------------------------EGSSYDFAFVDADKRMY 207 (278)
T ss_pred HHHHHHHcCCC-CcEEE--EEcCHHHHHHHHHhc-c-------------------------cCCCCCEEEECCCHHHH
Confidence 77543 3443 33433 346777777654321 0 01348999999998533
No 8
>PRK01581 speE spermidine synthase; Validated
Probab=92.74 E-value=1.3 Score=44.53 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=85.9
Q ss_pred cCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-----eE-EEEeecccccHHHHHHHHhhh
Q 021017 115 CSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-----VF-DVQYTTKIRETKELIASAKEQ 186 (318)
Q Consensus 115 ~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-----ay-~V~Y~T~~~ea~~LL~~~r~~ 186 (318)
...|-+.||.|.|--..+=..+.|. ++-+-+|=|+.-++-+++ +|.+. ++ +=+-+-.+.|+.+.|...
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~--- 223 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-VPELVSLNKSAFFDNRVNVHVCDAKEFLSSP--- 223 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-ccccchhccccCCCCceEEEECcHHHHHHhc---
Confidence 3678999999999777766666664 688889999999988885 54442 11 112223345565555311
Q ss_pred cCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc---CCCCCcceEEE-e
Q 021017 187 IRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK---KGGNPKTHIFV-H 262 (318)
Q Consensus 187 ~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~g~~~TdVfV-H 262 (318)
+ -++|||++|.|....+ .....||...+..-+ ++| | ||| .
T Consensus 224 -----------------------~-----~~YDVIIvDl~DP~~~----~~~~LyT~EFy~~~~~~LkPg-G---V~V~Q 267 (374)
T PRK01581 224 -----------------------S-----SLYDVIIIDFPDPATE----LLSTLYTSELFARIATFLTED-G---AFVCQ 267 (374)
T ss_pred -----------------------C-----CCccEEEEcCCCcccc----chhhhhHHHHHHHHHHhcCCC-c---EEEEe
Confidence 0 1699999998753322 247788877655433 233 3 232 1
Q ss_pred --------cCCchHHHhhhhhhccccccc---cccCceeeEEeec
Q 021017 263 --------DYYRHVERMCGDEFLCKENLV---EFNDMLAHFVLEK 296 (318)
Q Consensus 263 --------DvdR~VE~~~s~eFLC~~nlv---~~~grL~HF~I~~ 296 (318)
++-..+-+.+...|+--.... ..-|.+|=|.|.+
T Consensus 268 s~sp~~~~~~~~~i~~tL~~af~~v~~y~t~vPsyg~~WgF~~as 312 (374)
T PRK01581 268 SNSPADAPLVYWSIGNTIEHAGLTVKSYHTIVPSFGTDWGFHIAA 312 (374)
T ss_pred cCChhhhHHHHHHHHHHHHHhCCceEEEEEecCCCCCceEEEEEe
Confidence 111234566667777544332 2346679999953
No 9
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=92.64 E-value=0.92 Score=41.93 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=38.9
Q ss_pred CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCc
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~l 162 (318)
+.|-+.|+.|.|--.+....+.++ .+.+.+|-|+.-++.+++..|.+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~ 119 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL 119 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh
Confidence 568899999999988877777775 57899999999999888876544
No 10
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=92.27 E-value=0.32 Score=44.95 Aligned_cols=105 Identities=18% Similarity=0.317 Sum_probs=66.6
Q ss_pred HHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCceeE--EEEeecccccHHHHHHHHh
Q 021017 109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEIDVF--DVQYTTKIRETKELIASAK 184 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~leay--~V~Y~T~~~ea~~LL~~~r 184 (318)
.-++.. ..|-|.||.|+|--+..-..+.|. .+...+|-||.-++-.++-+|....- +=+.+-...|+.+.|+...
T Consensus 69 ~~~~~~-~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~ 147 (246)
T PF01564_consen 69 PPLLLH-PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ 147 (246)
T ss_dssp HHHHHS-SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS
T ss_pred hHhhcC-CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc
Confidence 334443 579999999999999998888886 57889999999988777655433211 1112223456666555433
Q ss_pred hhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhh
Q 021017 185 EQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARS 249 (318)
Q Consensus 185 ~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 249 (318)
.+ ++|||++|.+. |..|+-. .||.-.+...
T Consensus 148 --------------------------~~----~yDvIi~D~~d---p~~~~~~--l~t~ef~~~~ 177 (246)
T PF01564_consen 148 --------------------------EE----KYDVIIVDLTD---PDGPAPN--LFTREFYQLC 177 (246)
T ss_dssp --------------------------ST-----EEEEEEESSS---TTSCGGG--GSSHHHHHHH
T ss_pred --------------------------CC----cccEEEEeCCC---CCCCccc--ccCHHHHHHH
Confidence 22 79999999988 4444433 7776655443
No 11
>PRK00811 spermidine synthase; Provisional
Probab=90.94 E-value=1.5 Score=41.15 Aligned_cols=47 Identities=19% Similarity=0.329 Sum_probs=39.7
Q ss_pred CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCc
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~l 162 (318)
..|-+.||.|.|--...-..+.+. .+-+.+|=|+.-++.+++..|.+
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~ 123 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEI 123 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHh
Confidence 579999999999998888888873 47899999999999988876644
No 12
>PLN02366 spermidine synthase
Probab=90.39 E-value=2.6 Score=40.63 Aligned_cols=145 Identities=19% Similarity=0.337 Sum_probs=81.9
Q ss_pred CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCCCce-eE-EEEeecccccHHHHHHHHhhhcCCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHPEID-VF-DVQYTTKIRETKELIASAKEQIRNEC 191 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p~le-ay-~V~Y~T~~~ea~~LL~~~r~~~~~~C 191 (318)
..|-+.||.|.|.-.+.-..+.|. .+-+.+|=|+.-|+-.++.+|.+. .+ +=+.+-...+|.+.|+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~---------- 159 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLK---------- 159 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHh----------
Confidence 678999999999888776666664 467788999999998888776531 00 1112222344444443
Q ss_pred cccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc---CCCCCcc-----eEEE-e
Q 021017 192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK---KGGNPKT-----HIFV-H 262 (318)
Q Consensus 192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r---~~g~~~T-----dVfV-H 262 (318)
+.| +-++|||++|++....| + ...||...+..-+ ++| |.- ..+. .
T Consensus 160 ----------------~~~----~~~yDvIi~D~~dp~~~--~---~~L~t~ef~~~~~~~L~pg-Gvlv~q~~s~~~~~ 213 (308)
T PLN02366 160 ----------------NAP----EGTYDAIIVDSSDPVGP--A---QELFEKPFFESVARALRPG-GVVCTQAESMWLHM 213 (308)
T ss_pred ----------------hcc----CCCCCEEEEcCCCCCCc--h---hhhhHHHHHHHHHHhcCCC-cEEEECcCCcccch
Confidence 222 12599999999886544 1 3356655444432 232 221 1122 2
Q ss_pred cCCchHHHhhhhhhc--ccccc--ccc-cCceeeEEeec
Q 021017 263 DYYRHVERMCGDEFL--CKENL--VEF-NDMLAHFVLEK 296 (318)
Q Consensus 263 DvdR~VE~~~s~eFL--C~~nl--v~~-~grL~HF~I~~ 296 (318)
+.-+.+-+.+...|- ..-|. |-. .|-.|-|.+.+
T Consensus 214 ~~~~~i~~tl~~~F~~~v~~~~~~vPsy~~g~w~f~~as 252 (308)
T PLN02366 214 DLIEDLIAICRETFKGSVNYAWTTVPTYPSGVIGFVLCS 252 (308)
T ss_pred HHHHHHHHHHHHHCCCceeEEEecCCCcCCCceEEEEEE
Confidence 233455566667771 12111 112 34579999953
No 13
>PRK04457 spermidine synthase; Provisional
Probab=88.03 E-value=6.9 Score=36.43 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=36.8
Q ss_pred CCCccEEEecCCchhhh--HhhhccCCcEEEecCChhHHHHhhhhC
Q 021017 116 SSPCNFLVFGLTQETLL--WKALNHNGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 116 raPCNfLVFGLg~dsll--W~aLN~gGrTvFLeEd~~~i~~~~~~~ 159 (318)
..|-+.|+.|+|.-++. |....++++-+-+|-||.-++.+++.+
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f 110 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHF 110 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHc
Confidence 45889999999888764 666677889999999999999888764
No 14
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=87.10 E-value=3.2 Score=39.00 Aligned_cols=121 Identities=14% Similarity=0.167 Sum_probs=79.4
Q ss_pred HHHHHHHhhhhccCCCCcCC--CHHHHHHHHHHHHhcCCCccEEEecC--CchhhhHh-hhccCCcEEEecCChhHHHHh
Q 021017 81 TTVINTLLLYASRSNDSYHM--THSELKRISDVIRKCSSPCNFLVFGL--TQETLLWK-ALNHNGRTVFIDENRYYAAYF 155 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGL--g~dsllW~-aLN~gGrTvFLeEd~~~i~~~ 155 (318)
+++++.|.++|. .+..|.| +.++-+.+..+++. ..|-+.|-+|- |.-++.++ ++..+|+-+=+|=|+++++.+
T Consensus 43 ~~~L~~l~~~a~-~~~~~~~~~~~~~g~lL~~l~~~-~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~A 120 (247)
T PLN02589 43 PESMKELRELTA-KHPWNIMTTSADEGQFLNMLLKL-INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELG 120 (247)
T ss_pred CHHHHHHHHHHH-hcCCCCCccCHHHHHHHHHHHHH-hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHH
Confidence 456788899986 4544533 56666666666664 77999999985 55555333 345689999999999998877
Q ss_pred hhhC--CCceeEEEEeecccccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCC
Q 021017 156 EELH--PEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP 231 (318)
Q Consensus 156 ~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~p 231 (318)
++.. -+++ ..|.+ ...+|.+.|....++ .-|+-.+|+|.|||-++-++
T Consensus 121 r~~~~~ag~~-~~I~~--~~G~a~e~L~~l~~~-------------------------~~~~~~fD~iFiDadK~~Y~ 170 (247)
T PLN02589 121 LPVIQKAGVA-HKIDF--REGPALPVLDQMIED-------------------------GKYHGTFDFIFVDADKDNYI 170 (247)
T ss_pred HHHHHHCCCC-CceEE--EeccHHHHHHHHHhc-------------------------cccCCcccEEEecCCHHHhH
Confidence 6543 2332 45544 345777777654421 01234599999998876554
No 15
>PRK03612 spermidine synthase; Provisional
Probab=86.49 E-value=4.4 Score=41.45 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=36.3
Q ss_pred CCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhh
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~ 157 (318)
+.|-+.|+.|.|--...-..+.|+ .+-+.+|=|++-++..++
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~ 339 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART 339 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh
Confidence 679999999999888776667775 489999999999999887
No 16
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=76.95 E-value=3.1 Score=32.06 Aligned_cols=14 Identities=43% Similarity=0.703 Sum_probs=12.0
Q ss_pred ccEEEEcCCCCCCC
Q 021017 218 WDVILIDGPRGDGP 231 (318)
Q Consensus 218 WDvImVDgP~Gy~p 231 (318)
.|+|+||.|.++.+
T Consensus 40 ~d~viiD~p~~~~~ 53 (104)
T cd02042 40 YDYIIIDTPPSLGL 53 (104)
T ss_pred CCEEEEeCcCCCCH
Confidence 79999999997754
No 17
>PF10718 Ycf34: Hypothetical chloroplast protein Ycf34; InterPro: IPR019656 This entry represents Ycf34, a protein encoded in algal genomes and additionally found in cyanobacteria. The function is not known. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=69.36 E-value=1.7 Score=35.30 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=22.5
Q ss_pred cccccCCCCcccccccccEEEEcCCCCCCCCCCCC
Q 021017 202 CKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGR 236 (318)
Q Consensus 202 CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGR 236 (318)
=..-|+++++..|++||||+=-+ -|-+-|||
T Consensus 41 I~VnI~~~~~~~~~~EWDVv~C~----SF~ee~Gk 71 (77)
T PF10718_consen 41 IHVNIRSLKNGEIEMEWDVVGCL----SFVEEPGK 71 (77)
T ss_pred EEEEEEeCCCCcEEEEEEecccc----cchhcCCc
Confidence 33668899999999999997432 24455665
No 18
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=61.31 E-value=1.8 Score=42.25 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=18.8
Q ss_pred cccCCCCcccccccccEEEEc-CCCCC
Q 021017 204 LGINDLPNHVYEVDWDVILID-GPRGD 229 (318)
Q Consensus 204 LAl~~LP~evYe~~WDvImVD-gP~Gy 229 (318)
+++.-+=..+.+-+||+|+|| +|+|.
T Consensus 112 ~~l~~i~e~~~~~~yD~IV~DtaPTG~ 138 (322)
T COG0003 112 LALLKILEYYVSGEYDVIVVDTAPTGH 138 (322)
T ss_pred HHHHHHHHHHhccCCCEEEEcCCChHH
Confidence 344444556667789999999 67776
No 19
>PRK08618 ornithine cyclodeaminase; Validated
Probab=54.50 E-value=36 Score=32.51 Aligned_cols=121 Identities=11% Similarity=0.133 Sum_probs=65.0
Q ss_pred CCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchh--hhHhhhc-cCCcEEE-ecCChhHHHHhhhhCC---CceeEEEE
Q 021017 96 DSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQET--LLWKALN-HNGRTVF-IDENRYYAAYFEELHP---EIDVFDVQ 168 (318)
Q Consensus 96 ~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~ds--llW~aLN-~gGrTvF-LeEd~~~i~~~~~~~p---~leay~V~ 168 (318)
.|.-.|.+==.+..+.|.+ +.+.+++|||.|.+. .++..+. .+-+.|. .+-+++-.+.+.++.. +++.. .
T Consensus 106 lT~~RTaa~sala~~~la~-~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~--~ 182 (325)
T PRK08618 106 LTQIRTGALSGVATKYLAR-EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIY--V 182 (325)
T ss_pred hhhhhHHHHHHHHHHHhcC-CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEE--E
Confidence 4444555555666778887 778999999999986 3444332 3434444 4556665555544321 22211 1
Q ss_pred eecccccHHHHHHHHhhhcCCCCcccccccc-----ccccc--------ccCCCCcccccccccEEEEcCC
Q 021017 169 YTTKIRETKELIASAKEQIRNECKPVQNLLF-----SECKL--------GINDLPNHVYEVDWDVILIDGP 226 (318)
Q Consensus 169 Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~~-----S~CkL--------Al~~LP~evYe~~WDvImVDgP 226 (318)
+.+..++++.+.-- --|.|...+.+ ..+-+ ..+.||.++.+-. |.|+||-.
T Consensus 183 ----~~~~~~~~~~aDiV--i~aT~s~~p~i~~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a-~~vvvD~~ 246 (325)
T PRK08618 183 ----VNSADEAIEEADII--VTVTNAKTPVFSEKLKKGVHINAVGSFMPDMQELPSEAIARA-NKVVVESK 246 (325)
T ss_pred ----eCCHHHHHhcCCEE--EEccCCCCcchHHhcCCCcEEEecCCCCcccccCCHHHHhhC-CEEEECCH
Confidence 23445555333211 12555443321 22222 4577887776643 67888864
No 20
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=53.19 E-value=71 Score=30.01 Aligned_cols=118 Identities=20% Similarity=0.351 Sum_probs=77.2
Q ss_pred CHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCc-hhhhHhhhc--cCCcEEEecCChhHHHHhh
Q 021017 80 PTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQ-ETLLWKALN--HNGRTVFIDENRYYAAYFE 156 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~-dsllW~aLN--~gGrTvFLeEd~~~i~~~~ 156 (318)
++.+++-+=.+|- -+..|.+- .|-......|.+.+.|-+.|=+|=+- =|-+|.+.. +.||-+=+|=|+++++.++
T Consensus 24 ~~~~~~~~~e~a~-~~~~pi~~-~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~ 101 (219)
T COG4122 24 PPALLAELEEFAR-ENGVPIID-PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIAR 101 (219)
T ss_pred CchHHHHHHHHhH-hcCCCCCC-hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHH
Confidence 4455666666775 45556665 66667777777779999999997532 356676655 4689999999999988777
Q ss_pred hhCCCceeEEEEeeccc---ccHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCC
Q 021017 157 ELHPEIDVFDVQYTTKI---RETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPD 232 (318)
Q Consensus 157 ~~~p~leay~V~Y~T~~---~ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~pe 232 (318)
+.. +-+.|.=+..+ .++-+.|+. ...-.+|+|.||+=++.+|+
T Consensus 102 ~n~---~~ag~~~~i~~~~~gdal~~l~~------------------------------~~~~~fDliFIDadK~~yp~ 147 (219)
T COG4122 102 ENL---AEAGVDDRIELLLGGDALDVLSR------------------------------LLDGSFDLVFIDADKADYPE 147 (219)
T ss_pred HHH---HHcCCcceEEEEecCcHHHHHHh------------------------------ccCCCccEEEEeCChhhCHH
Confidence 652 22222221111 244444443 12336899999999998884
No 21
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=48.54 E-value=90 Score=28.00 Aligned_cols=68 Identities=13% Similarity=0.122 Sum_probs=48.7
Q ss_pred CCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhCCCc
Q 021017 95 NDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 95 n~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~p~l 162 (318)
|.+.+.-.+++..+.++|.++..+..+|=+|=|....+-.-.. +++.-+=+|-++..++.++++.|++
T Consensus 21 n~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~ 90 (204)
T TIGR03587 21 NSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNI 90 (204)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCC
Confidence 4333334567888888898877788899998877664433333 4667777899999999998876654
No 22
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=48.09 E-value=22 Score=27.46 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=34.6
Q ss_pred cEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhCCC
Q 021017 120 NFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 120 NfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~p~ 161 (318)
.+|-.|-|--..+..++..+ .+.+-+|=||.-++..+.+.+.
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~ 45 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPR 45 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHH
T ss_pred EEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHH
Confidence 46777888888888888888 8888899999998888866554
No 23
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=46.50 E-value=1.4e+02 Score=23.22 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCchhhhHhhh----c-cCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHH
Q 021017 104 ELKRISDVIRKCSSPCNFLVFGLTQETLLWKAL----N-HNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKE 178 (318)
Q Consensus 104 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aL----N-~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~ 178 (318)
+|..+++.|.+ + .+++|||-|+.......+ . .|-...++.+...+........++--.--+...-.-.+.-+
T Consensus 2 ~i~~~~~~i~~--~-~~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~ 78 (139)
T cd05013 2 ALEKAVDLLAK--A-RRIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVE 78 (139)
T ss_pred HHHHHHHHHHh--C-CEEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHH
Confidence 57778888877 2 579999999866544422 2 34455556555554444443445544444454444455666
Q ss_pred HHHHHhh
Q 021017 179 LIASAKE 185 (318)
Q Consensus 179 LL~~~r~ 185 (318)
+++.+++
T Consensus 79 ~~~~a~~ 85 (139)
T cd05013 79 AAEIAKE 85 (139)
T ss_pred HHHHHHH
Confidence 6666664
No 24
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=45.78 E-value=1e+02 Score=27.98 Aligned_cols=54 Identities=11% Similarity=0.028 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCccEEEecCCchhhhHhhhcc-CCcEEEecCChhHHHHhhhh
Q 021017 105 LKRISDVIRKCSSPCNFLVFGLTQETLLWKALNH-NGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 105 i~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~-gGrTvFLeEd~~~i~~~~~~ 158 (318)
...+++.|......+++|=+|=|--++--.++.. .+..+++|-|+.-++.++++
T Consensus 41 ~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~N 95 (199)
T PRK10909 41 RETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKN 95 (199)
T ss_pred HHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence 3556666654234578998877766666544443 36889999999998877654
No 25
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=45.04 E-value=5.5 Score=35.44 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=15.3
Q ss_pred cCCCCcccccccccEEEEcCCCC
Q 021017 206 INDLPNHVYEVDWDVILIDGPRG 228 (318)
Q Consensus 206 l~~LP~evYe~~WDvImVDgP~G 228 (318)
+..|=+++-+.+||+|+||+|.+
T Consensus 102 ~~~l~~~l~~~~yD~IIiD~pp~ 124 (217)
T cd02035 102 LLAVFREFSEGLYDVIVFDTAPT 124 (217)
T ss_pred HHHHHHHHhcCCCCEEEECCCCc
Confidence 33444444444599999999985
No 26
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=44.72 E-value=12 Score=35.61 Aligned_cols=16 Identities=50% Similarity=0.800 Sum_probs=13.8
Q ss_pred ccccEEEEcCCCCCCC
Q 021017 216 VDWDVILIDGPRGDGP 231 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~p 231 (318)
-.||||+||-|.|..|
T Consensus 116 ~~~~~iliD~P~g~~~ 131 (243)
T PF06564_consen 116 GPYDWILIDTPPGPSP 131 (243)
T ss_pred CCCCEEEEeCCCCCcH
Confidence 4699999999998765
No 27
>PF09954 DUF2188: Uncharacterized protein conserved in bacteria (DUF2188); InterPro: IPR018691 This family has no known function.
Probab=44.70 E-value=22 Score=26.19 Aligned_cols=51 Identities=16% Similarity=0.173 Sum_probs=35.4
Q ss_pred cccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhh
Q 021017 217 DWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMC 272 (318)
Q Consensus 217 ~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~ 272 (318)
.|-|-.-++-+ -.-..+-+-.||=-|-.||+.. +...|+||+-|..||+..
T Consensus 10 ~W~v~~eg~~r-a~~~~~Tk~eAi~~Ar~~a~~~----~~~el~Ih~~dG~i~~~~ 60 (62)
T PF09954_consen 10 GWAVKKEGAKR-ASKTFDTKAEAIEAARELAKNQ----GGGELIIHGRDGKIREER 60 (62)
T ss_pred CceEEeCCCcc-cccccCcHHHHHHHHHHHHHhC----CCcEEEEECCCCeEEEee
Confidence 37666553321 1344456778898888888763 358999999999998754
No 28
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=43.53 E-value=89 Score=27.28 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=41.9
Q ss_pred CCCHHHHHHHH-HHHHhcCCCccEEEecCCchhh--hHhh-hccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRIS-DVIRKCSSPCNFLVFGLTQETL--LWKA-LNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~-~vL~~~raPCNfLVFGLg~dsl--lW~a-LN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.||.+|++.+. .-+ ..++...+|.+|-|.-.+ .++. +..+|+-+-+|-++..++.++++
T Consensus 22 ~~t~~~~r~~~l~~l-~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n 84 (198)
T PRK00377 22 PMTKEEIRALALSKL-RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRN 84 (198)
T ss_pred CCCHHHHHHHHHHHc-CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 59999998775 223 235667899999976544 3332 34567888899999998877655
No 29
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=43.15 E-value=36 Score=28.21 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=12.0
Q ss_pred ccEEEEcCCCCCCC
Q 021017 218 WDVILIDGPRGDGP 231 (318)
Q Consensus 218 WDvImVDgP~Gy~p 231 (318)
.|+|+||.|.|...
T Consensus 45 yd~VIiD~p~~~~~ 58 (139)
T cd02038 45 YDYIIIDTGAGISD 58 (139)
T ss_pred CCEEEEECCCCCCH
Confidence 89999999988754
No 30
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=42.70 E-value=15 Score=31.06 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=13.7
Q ss_pred ccccEEEEcCCCCCCC
Q 021017 216 VDWDVILIDGPRGDGP 231 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~p 231 (318)
-++|+|+||.|.|+.+
T Consensus 91 ~~~d~viiDtpp~~~~ 106 (179)
T cd03110 91 EGAELIIIDGPPGIGC 106 (179)
T ss_pred cCCCEEEEECcCCCcH
Confidence 4689999999999864
No 31
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=42.09 E-value=1.5e+02 Score=29.85 Aligned_cols=89 Identities=15% Similarity=0.118 Sum_probs=56.8
Q ss_pred HHHHHhcCCCccEEEecCCchhhhHhhhccCC-cEEEecCChhHHHHhhhhC--CCceeEEEEeecccccHHHHHHHHhh
Q 021017 109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHNG-RTVFIDENRYYAAYFEELH--PEIDVFDVQYTTKIRETKELIASAKE 185 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~gG-rTvFLeEd~~~i~~~~~~~--p~leay~V~Y~T~~~ea~~LL~~~r~ 185 (318)
...++++....++|=.|=|.-.....++..|. +.+.+|-|+..++.++++. ++++.- +.+--..++.+.|.....
T Consensus 212 R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~--~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 212 RLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS--KAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred HHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCC--cEEEEEccHHHHHHHHHh
Confidence 33444444578899888777777666666554 7999999999999888653 334211 122234566666644321
Q ss_pred hcCCCCcccccccccccccccCCCCcccccccccEEEEcCCC
Q 021017 186 QIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPR 227 (318)
Q Consensus 186 ~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~ 227 (318)
. +-.+|+|++|-|.
T Consensus 290 ~----------------------------~~~fDlVilDPP~ 303 (396)
T PRK15128 290 R----------------------------GEKFDVIVMDPPK 303 (396)
T ss_pred c----------------------------CCCCCEEEECCCC
Confidence 0 1158999999995
No 32
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=41.98 E-value=6.5 Score=36.17 Aligned_cols=13 Identities=31% Similarity=0.705 Sum_probs=10.9
Q ss_pred cccccEEEEcCCC
Q 021017 215 EVDWDVILIDGPR 227 (318)
Q Consensus 215 e~~WDvImVDgP~ 227 (318)
+.+||+|+||+|.
T Consensus 122 ~~~yD~VVvDtpP 134 (254)
T cd00550 122 EAEYDVVVFDTAP 134 (254)
T ss_pred cCCCCEEEECCCC
Confidence 3489999999875
No 33
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=41.59 E-value=1.9e+02 Score=27.72 Aligned_cols=118 Identities=12% Similarity=-0.013 Sum_probs=65.4
Q ss_pred CCccEEEecCCchhhhHhhhccCCcEEEecC--C------hhHHHHhhhh-----CCCceeEEEEe----ecccccHHHH
Q 021017 117 SPCNFLVFGLTQETLLWKALNHNGRTVFIDE--N------RYYAAYFEEL-----HPEIDVFDVQY----TTKIRETKEL 179 (318)
Q Consensus 117 aPCNfLVFGLg~dsllW~aLN~gGrTvFLeE--d------~~~i~~~~~~-----~p~leay~V~Y----~T~~~ea~~L 179 (318)
.-..+||--.+|-+..+.+...|.+.++++- + ++.+...-.+ +|....--+.+ +-.+.+.+++
T Consensus 101 ~gd~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~l~~I 180 (387)
T PRK09331 101 KGDYVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLADAKKV 180 (387)
T ss_pred CCCEEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCcccccHHHH
Confidence 3456777777888877766666777777764 2 2223322221 23444333333 2345667777
Q ss_pred HHHHhhhcCCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHH
Q 021017 180 IASAKEQIRNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAG 244 (318)
Q Consensus 180 L~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAa 244 (318)
.+.+++. .+ +..-+.--++..+|-.+-+..=|+++..+=+... +|+|++-|+...
T Consensus 181 ~~la~~~---g~-----~livD~a~~~g~~~~~~~~~g~D~~~~s~~K~l~--~~~~~G~l~~~~ 235 (387)
T PRK09331 181 AKVAHEY---GI-----PFLLNGAYTVGRMPVDGKKLGADFIVGSGHKSMA--ASAPSGVLATTE 235 (387)
T ss_pred HHHHHHc---CC-----EEEEECCcccCCcCCCHHHcCCCEEEeeCccccc--CCCCEEEEEECH
Confidence 7766641 11 2233333444445544433223888888766443 788998887643
No 34
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=41.15 E-value=1.9e+02 Score=26.79 Aligned_cols=73 Identities=19% Similarity=0.257 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHhhhhccCCCCcCCC--HHHH-HHHHHHHHhcCCCccEEEecCCchh---hhHhhhccCCcEEEecCC
Q 021017 75 GNPPLPTTVINTLLLYASRSNDSYHMT--HSEL-KRISDVIRKCSSPCNFLVFGLTQET---LLWKALNHNGRTVFIDEN 148 (318)
Q Consensus 75 ~~~~lp~~v~~ALvhYAt~sn~tpqqt--~~Ei-~~~~~vL~~~raPCNfLVFGLg~ds---llW~aLN~gGrTvFLeEd 148 (318)
+..++|+.|.+|+..+-. +.-.+... .+|+ ..+++.+.. ..+=+.++.|=|.+. .++.-+++ |++|.+.+.
T Consensus 6 ~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~la~~~g~-~~~~~~~~~~~~t~al~~~~~~~~~~-g~~vl~~~~ 82 (356)
T cd06451 6 GPSNVPPRVLKAMNRPML-GHRSPEFLALMDEILEGLRYVFQT-ENGLTFLLSGSGTGAMEAALSNLLEP-GDKVLVGVN 82 (356)
T ss_pred CCcCCCHHHHHHhCCCcc-CCCCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEecCcHHHHHHHHHHhCCC-CCEEEEecC
Confidence 466899999999976532 22222222 2333 334444442 333345666766665 34444555 677877665
Q ss_pred hh
Q 021017 149 RY 150 (318)
Q Consensus 149 ~~ 150 (318)
..
T Consensus 83 ~~ 84 (356)
T cd06451 83 GV 84 (356)
T ss_pred Cc
Confidence 43
No 35
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=40.70 E-value=15 Score=35.46 Aligned_cols=24 Identities=46% Similarity=0.654 Sum_probs=17.2
Q ss_pred CCCCcccccccccEEEEcC-----CCCCC
Q 021017 207 NDLPNHVYEVDWDVILIDG-----PRGDG 230 (318)
Q Consensus 207 ~~LP~evYe~~WDvImVDg-----P~Gy~ 230 (318)
+..|.|=.+..-||||||| |+|+.
T Consensus 105 ~~v~~erh~fr~dvilvDGnG~lHprGfG 133 (261)
T KOG4417|consen 105 KSVITERHEFRPDVILVDGNGELHPRGFG 133 (261)
T ss_pred HhcccccCCccccEEEEcCCceEcccccc
Confidence 4455555666689999998 77764
No 36
>PF13479 AAA_24: AAA domain
Probab=40.23 E-value=31 Score=30.77 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=24.7
Q ss_pred CCccEEEe---cCCchhhhHhhhccCCcEEEecCChh
Q 021017 117 SPCNFLVF---GLTQETLLWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 117 aPCNfLVF---GLg~dsllW~aLN~gGrTvFLeEd~~ 150 (318)
.|-++||+ |.|.-++.... ++++||+=+..
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g 34 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFIDTENG 34 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEEeCCC
Confidence 47789999 57888887777 99999987766
No 37
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=39.99 E-value=18 Score=35.85 Aligned_cols=71 Identities=20% Similarity=0.437 Sum_probs=43.0
Q ss_pred cccccc---cEEEEcCCCCCCCCCCCCcc--hhhhHHHHhhhcCCCCCcceEEEecCCchHHHhhhhhhccccccccccC
Q 021017 213 VYEVDW---DVILIDGPRGDGPDGPGRMS--PIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGDEFLCKENLVEFND 287 (318)
Q Consensus 213 vYe~~W---DvImVDgP~Gy~peaPGRM~--aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~g 287 (318)
+=+++| |+++||.|.|-..|==.=+. .+.+.||+-- ..-+|-+-||+|++. +|++.-+.-.|
T Consensus 149 lk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVT------TPQ~vAl~Dv~K~i~-------fc~K~~I~ilG 215 (300)
T KOG3022|consen 149 LKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVT------TPQEVALQDVRKEID-------FCRKAGIPILG 215 (300)
T ss_pred HhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEe------CchhhhhHHHHhhhh-------hhhhcCCceEE
Confidence 446788 99999999998765211110 0002222221 235788899999998 78887766433
Q ss_pred ---ceeeEEeec
Q 021017 288 ---MLAHFVLEK 296 (318)
Q Consensus 288 ---rL~HF~I~~ 296 (318)
+.-+|+-++
T Consensus 216 vVENMs~f~Cp~ 227 (300)
T KOG3022|consen 216 VVENMSGFVCPK 227 (300)
T ss_pred EEeccccccCCC
Confidence 344555544
No 38
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=39.61 E-value=16 Score=34.31 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=18.4
Q ss_pred ccccEEEEc-CCCCC---CCCCCCCcchhh
Q 021017 216 VDWDVILID-GPRGD---GPDGPGRMSPIF 241 (318)
Q Consensus 216 ~~WDvImVD-gP~Gy---~peaPGRM~aIy 241 (318)
-+||+|+|| +|+|. .=+.|.+|....
T Consensus 111 ~~yD~iVvDtaPtghtLrlL~lP~~l~~~l 140 (284)
T TIGR00345 111 NEFDVVIFDTAPTGHTLRLLQLPEVLSSFL 140 (284)
T ss_pred ccCCEEEECCCChHHHHHHHhhHHHHHHHH
Confidence 479999999 56676 345677665544
No 39
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=39.60 E-value=2.4e+02 Score=24.06 Aligned_cols=80 Identities=19% Similarity=0.225 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhh----HhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLL----WKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIR 174 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll----W~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ 174 (318)
++..+++..+.+.|.+ +. ++.|||.|.-..+ ..-|..-|..++.-++.. .....++=-+--+.|.-.-+
T Consensus 14 ~l~~~~~~~~~~~l~~--a~-~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~Dv~I~iS~sG~t~ 86 (179)
T TIGR03127 14 RIDEEELDKLADKIIK--AK-RIFVAGAGRSGLVGKAFAMRLMHLGFNVYVVGETT----TPSIKKGDLLIAISGSGETE 86 (179)
T ss_pred hCCHHHHHHHHHHHHh--CC-EEEEEecCHHHHHHHHHHHHHHhCCCeEEEeCCcc----cCCCCCCCEEEEEeCCCCcH
Confidence 6778899999999976 33 8999999987653 333566676666555431 11222333345566666667
Q ss_pred cHHHHHHHHhh
Q 021017 175 ETKELIASAKE 185 (318)
Q Consensus 175 ea~~LL~~~r~ 185 (318)
+.-++++.+|+
T Consensus 87 ~~i~~~~~ak~ 97 (179)
T TIGR03127 87 SLVTVAKKAKE 97 (179)
T ss_pred HHHHHHHHHHH
Confidence 77777777775
No 40
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=39.35 E-value=1.3e+02 Score=28.31 Aligned_cols=85 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhh----hHhhhccCCcEEEecCChhHHH-HhhhhCCCceeEEEEeeccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETL----LWKALNHNGRTVFIDENRYYAA-YFEELHPEIDVFDVQYTTKI 173 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsl----lW~aLN~gGrTvFLeEd~~~i~-~~~~~~p~leay~V~Y~T~~ 173 (318)
++=..+|..+.+.|.+ +.-++.+||.|.... +|..|++-|..+++.++..... ......++=-.--+.|.-.-
T Consensus 30 ~~~~~~l~~~~~~l~~--a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t 107 (326)
T PRK10892 30 QYINQDFTLACEKMFW--CKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES 107 (326)
T ss_pred HHHHHHHHHHHHHHHh--cCCeEEEEeCcHhHHHHHHHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC
Confidence 3333478888888875 334799999997765 5778899999998865554332 22223334346667777777
Q ss_pred ccHHHHHHHHhh
Q 021017 174 RETKELIASAKE 185 (318)
Q Consensus 174 ~ea~~LL~~~r~ 185 (318)
++.-++++.+|+
T Consensus 108 ~~~~~~~~~ak~ 119 (326)
T PRK10892 108 SEILALIPVLKR 119 (326)
T ss_pred HHHHHHHHHHHH
Confidence 788888888885
No 41
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=36.34 E-value=20 Score=32.10 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=12.0
Q ss_pred ccccEEEEcCCCCC
Q 021017 216 VDWDVILIDGPRGD 229 (318)
Q Consensus 216 ~~WDvImVDgP~Gy 229 (318)
-+||+|+||.|.+.
T Consensus 118 ~~yD~iiID~pp~l 131 (259)
T COG1192 118 DDYDYIIIDTPPSL 131 (259)
T ss_pred cCCCEEEECCCCch
Confidence 47999999999865
No 42
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=35.79 E-value=1.6e+02 Score=29.79 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=17.7
Q ss_pred cccEEEEcCCCCCCCCCCCCcchhh
Q 021017 217 DWDVILIDGPRGDGPDGPGRMSPIF 241 (318)
Q Consensus 217 ~WDvImVDgP~Gy~peaPGRM~aIy 241 (318)
..|+|+||.| |+.+.-+..|.-+.
T Consensus 299 ~~DlVlIDt~-G~~~~d~~~~~~L~ 322 (424)
T PRK05703 299 DCDVILIDTA-GRSQRDKRLIEELK 322 (424)
T ss_pred CCCEEEEeCC-CCCCCCHHHHHHHH
Confidence 3599999998 78777666665543
No 43
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=35.27 E-value=20 Score=34.29 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=16.4
Q ss_pred cccccEEEEcCC-CCC---CCCCCCCcchh
Q 021017 215 EVDWDVILIDGP-RGD---GPDGPGRMSPI 240 (318)
Q Consensus 215 e~~WDvImVDgP-~Gy---~peaPGRM~aI 240 (318)
+-+||+|+||+| +|. .-+.|-+|...
T Consensus 124 ~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~ 153 (305)
T PF02374_consen 124 SGEYDLIVVDTPPTGHTLRLLSLPERLRWW 153 (305)
T ss_dssp HCSTSEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred hCCCCEEEECCCCcHHHHHHHhHHHHHHHH
Confidence 579999999965 443 23445555433
No 44
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=34.83 E-value=1.7e+02 Score=22.29 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=37.6
Q ss_pred CCHHHHHH-HHHHHHhcCCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhh
Q 021017 100 MTHSELKR-ISDVIRKCSSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 100 qt~~Ei~~-~~~vL~~~raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~ 158 (318)
|+..|+.. +.+.+. .+..-.+|-+|-|.-...+...+. +++-+-+|-++..++.++++
T Consensus 2 ~~~~~~~~~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 2 MTKREVRALTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CchHHHHHHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 45666555 333332 233457999999888877766653 56777788888777766543
No 45
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=34.63 E-value=23 Score=31.04 Aligned_cols=17 Identities=47% Similarity=0.622 Sum_probs=14.2
Q ss_pred ccccEEEEcCCCCCCCC
Q 021017 216 VDWDVILIDGPRGDGPD 232 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~pe 232 (318)
-..|+|+||+|.|+.+.
T Consensus 107 ~~yD~VIiD~p~~~~~~ 123 (251)
T TIGR01969 107 DDTDFLLIDAPAGLERD 123 (251)
T ss_pred hhCCEEEEeCCCccCHH
Confidence 36899999999998753
No 46
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=34.21 E-value=68 Score=30.62 Aligned_cols=35 Identities=17% Similarity=0.308 Sum_probs=26.2
Q ss_pred CCCCceEEEEcccccccCccchhHHHHHHHHHHHHHHHHHHHhcccc
Q 021017 4 SNSNTKLILLHPYIQKQGTSNRLWLLAFVSFFTIAFLLTLIYTRESI 50 (318)
Q Consensus 4 ~~~~~klil~h~~~~k~~~~~r~wll~~~~~f~~~~l~t~~~t~~~~ 50 (318)
.|+|++|..+-.+ |+|+|+|+++.-+|.++++...
T Consensus 89 kNtdp~lm~lDss------------Ll~lg~~aLlsgitaff~~nA~ 123 (226)
T COG4858 89 KNTDPWLMWLDSS------------LLFLGAMALLSGITAFFQKNAQ 123 (226)
T ss_pred cCCCceEEEeccc------------HHHHHHHHHHHHHHHHHhcCCc
Confidence 3566666666555 5799999999999998888644
No 47
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=34.11 E-value=1e+02 Score=24.19 Aligned_cols=53 Identities=23% Similarity=0.176 Sum_probs=33.2
Q ss_pred cccEEEEcCCCCCCCC-------CCCCcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhh
Q 021017 217 DWDVILIDGPRGDGPD-------GPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMC 272 (318)
Q Consensus 217 ~WDvImVDgP~Gy~pe-------aPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~ 272 (318)
+=|+|+||-+..+.+. .+..+..+ ....+.+.++. +.|=|+++-.++..|..+
T Consensus 85 ~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~--~~~vv~~~~~~~~~~~~~ 144 (165)
T cd01120 85 GDDLIILDELTRLVRALREIREGYPGELDEE-LRELLERARKG--GVTVIFTLQVPSGDKGDP 144 (165)
T ss_pred CCEEEEEEcHHHHHHHHHHHHhcCChHHHHH-HHHHHHHHhcC--CceEEEEEecCCccccCc
Confidence 3468999999976432 12222233 33445566554 478889888888777655
No 48
>PHA02663 hypothetical protein; Provisional
Probab=33.96 E-value=27 Score=31.53 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.1
Q ss_pred CCCCCCc-chhhhHHHHhhhc
Q 021017 231 PDGPGRM-SPIFTAGVLARSK 250 (318)
Q Consensus 231 peaPGRM-~aIyTAavmAR~r 250 (318)
|.+|||| .||=--|.|-|--
T Consensus 82 ptspgrmvtavelcaqmgr~w 102 (172)
T PHA02663 82 PTSPGRMVTAVELCAQMGRLW 102 (172)
T ss_pred CCCCcchhHHHHHHHHHHHHH
Confidence 6799999 8888889998863
No 49
>PF10476 DUF2448: Protein of unknown function C-terminus (DUF2448) ; InterPro: IPR018861 The proteins in the entry are restricted to chordates and their function is not known.
Probab=33.00 E-value=1.5e+02 Score=28.14 Aligned_cols=26 Identities=35% Similarity=0.657 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHH-HHhcccc
Q 021017 25 RLWLLAFVSFFTIAFLLTL-IYTRESI 50 (318)
Q Consensus 25 r~wll~~~~~f~~~~l~t~-~~t~~~~ 50 (318)
.+-||=|++|..|+||++. +|-..+.
T Consensus 23 qVIlLR~LAFL~CAFLla~Alyg~~d~ 49 (204)
T PF10476_consen 23 QVILLRFLAFLACAFLLATALYGSSDN 49 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 4555778899999999985 5666553
No 50
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=32.82 E-value=12 Score=35.12 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=16.3
Q ss_pred CCCCcccccccccEEEEcCCCCCC
Q 021017 207 NDLPNHVYEVDWDVILIDGPRGDG 230 (318)
Q Consensus 207 ~~LP~evYe~~WDvImVDgP~Gy~ 230 (318)
+.|=.++.+-+.|+|+||+|.|-.
T Consensus 156 ~qll~~~~~~~~D~vIID~PP~~g 179 (265)
T COG0489 156 LQLLEDVLWGEYDYVIIDTPPGTG 179 (265)
T ss_pred HHHHHHHhccCCCEEEEeCCCCch
Confidence 344444555556899999999853
No 51
>COG4951 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.30 E-value=35 Score=34.11 Aligned_cols=63 Identities=21% Similarity=0.368 Sum_probs=47.2
Q ss_pred CCCCHH----HHHHHhhhhccCCCCcCCCHHHHHHHH---HHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCC
Q 021017 77 PPLPTT----VINTLLLYASRSNDSYHMTHSELKRIS---DVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDEN 148 (318)
Q Consensus 77 ~~lp~~----v~~ALvhYAt~sn~tpqqt~~Ei~~~~---~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd 148 (318)
++||.- +-.||+.||- |.++||+..-....+ |+|.+ ++=.||+-.-|.-|- -|.|++||.||+
T Consensus 175 ~~IsareARrlG~a~i~~AM--~~~~ql~~~SyDR~FPnQDt~pk-ggfGNLIALPlqG~~------r~~g~~VFvDE~ 244 (361)
T COG4951 175 SRISAREARRLGTAIISYAM--SRTRQLRLGSYDRLFPNQDTMPK-GGFGNLIALPLQGRP------RELGGSVFVDEN 244 (361)
T ss_pred CcccHHHHHHHHHHHHHHHH--hhCcccCcchhhhcCCccccccc-CcccceeeeccCCCh------hhcCCcEEeccC
Confidence 455544 4569999996 788999887776654 88988 888888877665443 367999999975
No 52
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=32.03 E-value=30 Score=27.58 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=16.1
Q ss_pred cEEEEcCCCCCCCCCCCCcchhhhHHHHhhh
Q 021017 219 DVILIDGPRGDGPDGPGRMSPIFTAGVLARS 249 (318)
Q Consensus 219 DvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 249 (318)
|+|+||.|.|+.. .+..++..+
T Consensus 44 D~IIiDtpp~~~~---------~~~~~l~~a 65 (106)
T cd03111 44 DYVVVDLGRSLDE---------VSLAALDQA 65 (106)
T ss_pred CEEEEeCCCCcCH---------HHHHHHHHc
Confidence 9999999998753 455566543
No 53
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=31.98 E-value=45 Score=33.08 Aligned_cols=38 Identities=16% Similarity=0.346 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCC
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDEN 148 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd 148 (318)
+...++...+.+-|.. . .+-+.|-+.|..|.+++++=-
T Consensus 139 k~~id~~~~ie~~l~~-~-----------~~~i~WV~i~~~GT~l~I~v~ 176 (385)
T PF06898_consen 139 KFKIDSCEEIEKKLRK-Q-----------FPDISWVGIEIKGTRLIIEVV 176 (385)
T ss_pred ecCCChHHHHHHHHHh-h-----------CCCeEEEEEEEEeeEEEEEEE
Confidence 4444556677777765 3 567899999999999998743
No 54
>PHA02518 ParA-like protein; Provisional
Probab=31.80 E-value=25 Score=29.87 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.4
Q ss_pred cccEEEEcCCCCC
Q 021017 217 DWDVILIDGPRGD 229 (318)
Q Consensus 217 ~WDvImVDgP~Gy 229 (318)
.+|+|+||.|.|.
T Consensus 76 ~~d~viiD~p~~~ 88 (211)
T PHA02518 76 GYDYVVVDGAPQD 88 (211)
T ss_pred cCCEEEEeCCCCc
Confidence 5799999999875
No 55
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=31.02 E-value=29 Score=30.47 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=12.9
Q ss_pred cccEEEEcCCCCCCC
Q 021017 217 DWDVILIDGPRGDGP 231 (318)
Q Consensus 217 ~WDvImVDgP~Gy~p 231 (318)
+.|+|+||+|.|...
T Consensus 111 ~~D~viiD~p~~~~~ 125 (261)
T TIGR01968 111 EFDYVIIDCPAGIES 125 (261)
T ss_pred hCCEEEEeCCCCcCH
Confidence 589999999998754
No 56
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=30.77 E-value=3.5e+02 Score=23.35 Aligned_cols=116 Identities=12% Similarity=-0.026 Sum_probs=56.9
Q ss_pred CccEEEecC-Cch--hhhHhhhccCCcEEEecCChhHHHHhhhhCC---CceeEEEEeecccccHHHHHHHHhhh-cCCC
Q 021017 118 PCNFLVFGL-TQE--TLLWKALNHNGRTVFIDENRYYAAYFEELHP---EIDVFDVQYTTKIRETKELIASAKEQ-IRNE 190 (318)
Q Consensus 118 PCNfLVFGL-g~d--sllW~aLN~gGrTvFLeEd~~~i~~~~~~~p---~leay~V~Y~T~~~ea~~LL~~~r~~-~~~~ 190 (318)
-.+.||||= |.- ........+|.+.+.+.-+++..+.+.+... +.+...+ ...+.+++.+..++. .==.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~diVi~ 103 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAV----ETSDDAARAAAIKGADVVFA 103 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEe----eCCCHHHHHHHHhcCCEEEE
Confidence 468999985 542 3344444555555556777766666554321 2222222 123344444333310 0001
Q ss_pred Ccccccc---c-cccc---ccc-----cCCCCcccccccccEEEEcCCCCCCCCCCCCc
Q 021017 191 CKPVQNL---L-FSEC---KLG-----INDLPNHVYEVDWDVILIDGPRGDGPDGPGRM 237 (318)
Q Consensus 191 C~p~~~~---~-~S~C---kLA-----l~~LP~evYe~~WDvImVDgP~Gy~peaPGRM 237 (318)
|.|.+.. . ...+ ++. -.+...++-++..|++++|||.++.+-+.|-.
T Consensus 104 at~~g~~~~~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~g~ 162 (194)
T cd01078 104 AGAAGVELLEKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDREGKVPYGAIGVGGL 162 (194)
T ss_pred CCCCCceechhhhcccCceeEEEEccCCCCCCcccccccCCceecCCCeEEEeeccchh
Confidence 2333321 0 0111 111 22445566778999999999988855444443
No 57
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=30.77 E-value=95 Score=24.15 Aligned_cols=105 Identities=16% Similarity=0.209 Sum_probs=65.1
Q ss_pred EEEecCCchhh-hHhhhccCC-cEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHhhhcCCCCccccccc
Q 021017 121 FLVFGLTQETL-LWKALNHNG-RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKPVQNLL 198 (318)
Q Consensus 121 fLVFGLg~dsl-lW~aLN~gG-rTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p~~~~~ 198 (318)
++|+|.|.-.. +-..|..+| +-+.+|.|+..+..+++.. +++-|-.. .+-+ .|+.+.-+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~-~~~~-~l~~a~i~------------ 61 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDA-TDPE-VLERAGIE------------ 61 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-T-TSHH-HHHHTTGG------------
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccc-hhhh-HHhhcCcc------------
Confidence 57899986543 456677788 7999999999999999886 44544332 2322 33333311
Q ss_pred ccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhhhh
Q 021017 199 FSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGD 274 (318)
Q Consensus 199 ~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s~ 274 (318)
+=|.|++..+. + ..-..++.+||..- +.-.|+++=-|++-++.+..
T Consensus 62 ------------------~a~~vv~~~~~---d------~~n~~~~~~~r~~~---~~~~ii~~~~~~~~~~~l~~ 107 (116)
T PF02254_consen 62 ------------------KADAVVILTDD---D------EENLLIALLARELN---PDIRIIARVNDPENAELLRQ 107 (116)
T ss_dssp ------------------CESEEEEESSS---H------HHHHHHHHHHHHHT---TTSEEEEEESSHHHHHHHHH
T ss_pred ------------------ccCEEEEccCC---H------HHHHHHHHHHHHHC---CCCeEEEEECCHHHHHHHHH
Confidence 11345555552 1 45566677777642 34778888888777777643
No 58
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=30.56 E-value=2.6e+02 Score=21.81 Aligned_cols=64 Identities=17% Similarity=0.199 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHH
Q 021017 102 HSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIA 181 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~ 181 (318)
.--+..++..|++ .-++.-++|.--+. +++++.+++..|++=...+.|.....++.+|++
T Consensus 14 ~lGl~~la~~l~~--~G~~v~~~d~~~~~------------------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~ 73 (121)
T PF02310_consen 14 PLGLLYLAAYLRK--AGHEVDILDANVPP------------------EELVEALRAERPDVVGISVSMTPNLPEAKRLAR 73 (121)
T ss_dssp SHHHHHHHHHHHH--TTBEEEEEESSB-H------------------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH--CCCeEEEECCCCCH------------------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHH
Confidence 3457777788876 35555555443221 778889999999999999989999999999999
Q ss_pred HHhh
Q 021017 182 SAKE 185 (318)
Q Consensus 182 ~~r~ 185 (318)
..|+
T Consensus 74 ~~k~ 77 (121)
T PF02310_consen 74 AIKE 77 (121)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8774
No 59
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=30.17 E-value=28 Score=28.97 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=13.1
Q ss_pred ccEEEEcCCCCCCCC
Q 021017 218 WDVILIDGPRGDGPD 232 (318)
Q Consensus 218 WDvImVDgP~Gy~pe 232 (318)
-|+|+||+|.|....
T Consensus 95 yD~iiiD~~~~~~~~ 109 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP 109 (195)
T ss_dssp SSEEEEEECSSSSHH
T ss_pred ccceeecccccccHH
Confidence 799999999988654
No 60
>PRK01294 lipase chaperone; Provisional
Probab=29.98 E-value=63 Score=31.96 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=12.7
Q ss_pred CCCCCCcchhhhHHHHhhhcCCC
Q 021017 231 PDGPGRMSPIFTAGVLARSKKGG 253 (318)
Q Consensus 231 peaPGRM~aIyTAavmAR~r~~g 253 (318)
+..+..|-.++.+-.--|.+--|
T Consensus 151 ~~d~~~l~~~~~~~~~Lr~~~f~ 173 (336)
T PRK01294 151 KLDLQALQQLLDARLALRARFFS 173 (336)
T ss_pred ccCHHHHHHHHHHHHHHHHHHcC
Confidence 33455566666666555655444
No 61
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=29.44 E-value=1.3e+02 Score=22.75 Aligned_cols=41 Identities=17% Similarity=0.033 Sum_probs=31.1
Q ss_pred ccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhC
Q 021017 119 CNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 119 CNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~ 159 (318)
-.+|-.|-|.-........ +|.+-+=+|-||..++.++++.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 3578887766655544444 8999999999999999988664
No 62
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=29.43 E-value=2.9e+02 Score=25.44 Aligned_cols=70 Identities=13% Similarity=0.348 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHhcCCCccEEEe---cCCch-----hhhHhhhcc----CC-cEEEecCChhHHHHhhhhCCCceeEEEE
Q 021017 102 HSELKRISDVIRKCSSPCNFLVF---GLTQE-----TLLWKALNH----NG-RTVFIDENRYYAAYFEELHPEIDVFDVQ 168 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~raPCNfLVF---GLg~d-----sllW~aLN~----gG-rTvFLeEd~~~i~~~~~~~p~leay~V~ 168 (318)
..|++.++.+|+++. +-.|+++ |-|-+ ++.|+-+++ .| .+||..-+.+..+..+...+.++-|++.
T Consensus 95 ~~e~~~~~~il~~~~-~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~~~~~~~v~~~~~~ 173 (222)
T cd03287 95 MVELSETSHILSNCT-SRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEILRRFEGSIRNYHMS 173 (222)
T ss_pred HHHHHHHHHHHHhCC-CCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHHHhcccCeEEEEEE
Confidence 359999999999743 4455554 43433 556766643 35 5555555555554444434578999999
Q ss_pred eecc
Q 021017 169 YTTK 172 (318)
Q Consensus 169 Y~T~ 172 (318)
|...
T Consensus 174 ~~~~ 177 (222)
T cd03287 174 YLES 177 (222)
T ss_pred EEEe
Confidence 9863
No 63
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=28.73 E-value=99 Score=26.95 Aligned_cols=44 Identities=14% Similarity=0.161 Sum_probs=27.9
Q ss_pred HHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHH
Q 021017 109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYA 152 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i 152 (318)
.+.+.+....+.+++.|=|-|+..|.--++.|...|.|=|..-+
T Consensus 70 ~~~i~~~~~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v 113 (183)
T PF04072_consen 70 REFIAKHPGARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEV 113 (183)
T ss_dssp HHHHHHHTTESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHH
T ss_pred HHhhccCCCCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHH
Confidence 33443323345999999999999999999876677766655443
No 64
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=28.30 E-value=34 Score=30.73 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred hhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeeccccc
Q 021017 134 KALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRE 175 (318)
Q Consensus 134 ~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~e 175 (318)
.++..++||+-|+-..--.+.+.+..-++ .|+|++.+..
T Consensus 28 ~~i~~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~ 66 (148)
T PF07652_consen 28 EAIKRRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARM 66 (148)
T ss_dssp HHHHTT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS
T ss_pred HHHHccCeEEEecccHHHHHHHHHHHhcC---CcccCceeee
Confidence 46778999999999999998888876555 5888887765
No 65
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=27.97 E-value=2.4e+02 Score=26.62 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=18.8
Q ss_pred CCccEEEecCCchhhhHhhhc
Q 021017 117 SPCNFLVFGLTQETLLWKALN 137 (318)
Q Consensus 117 aPCNfLVFGLg~dsllW~aLN 137 (318)
.|=.+|=||-|+-+.+|++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~ 53 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAARE 53 (274)
T ss_pred CCceEEEecCChHHHHHHHHH
Confidence 578999999999999999864
No 66
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=27.91 E-value=60 Score=32.17 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=27.6
Q ss_pred hHhhhccCCcEEEe------cCChhHHHHhhhhCCCce
Q 021017 132 LWKALNHNGRTVFI------DENRYYAAYFEELHPEID 163 (318)
Q Consensus 132 lW~aLN~gGrTvFL------eEd~~~i~~~~~~~p~le 163 (318)
.|..|++||+-||- |||+.=|+.+.++||+.+
T Consensus 354 a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~~~ 391 (426)
T TIGR00563 354 IWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPDFP 391 (426)
T ss_pred HHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCCCe
Confidence 47779999998775 899999999999999864
No 67
>PRK15482 transcriptional regulator MurR; Provisional
Probab=27.36 E-value=3.7e+02 Score=24.81 Aligned_cols=84 Identities=20% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhh----HhhhccCCcEEEecCChhHHHH-hhhhCCCceeEEEEeeccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLL----WKALNHNGRTVFIDENRYYAAY-FEELHPEIDVFDVQYTTKI 173 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll----W~aLN~gGrTvFLeEd~~~i~~-~~~~~p~leay~V~Y~T~~ 173 (318)
+...+++..+.+.|.+ ++ ++.|||.|...++ ..-|..=|..+....|...... .....++=-.--+.|.-.-
T Consensus 119 ~id~~~l~~~~~~i~~--A~-~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t 195 (285)
T PRK15482 119 LFDYARLQKIIEVISK--AP-FIQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSK 195 (285)
T ss_pred hcCHHHHHHHHHHHHh--CC-eeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 5678899999999976 33 6999999986554 3334455777777666554332 2333455456677888888
Q ss_pred ccHHHHHHHHhh
Q 021017 174 RETKELIASAKE 185 (318)
Q Consensus 174 ~ea~~LL~~~r~ 185 (318)
.+.-++++.+++
T Consensus 196 ~~~~~~~~~a~~ 207 (285)
T PRK15482 196 KEIVLCAEAARK 207 (285)
T ss_pred HHHHHHHHHHHH
Confidence 888888888885
No 68
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=27.31 E-value=34 Score=28.79 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=12.7
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+-|+|+||.|.|+.
T Consensus 66 ~~yD~VIiD~pp~~~ 80 (169)
T cd02037 66 GELDYLVIDMPPGTG 80 (169)
T ss_pred CCCCEEEEeCCCCCc
Confidence 468999999999864
No 69
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.18 E-value=62 Score=27.18 Aligned_cols=13 Identities=8% Similarity=0.176 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 021017 31 FVSFFTIAFLLTL 43 (318)
Q Consensus 31 ~~~~f~~~~l~t~ 43 (318)
||.+|.++|++..
T Consensus 8 ii~~i~l~~~~~~ 20 (130)
T PF12273_consen 8 IIVAILLFLFLFY 20 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444433
No 70
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=26.65 E-value=40 Score=28.15 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=18.7
Q ss_pred ccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhh
Q 021017 216 VDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARS 249 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 249 (318)
-+-|+|+||||.|.... |...++-+-+++.
T Consensus 98 ~~~D~viid~~g~~~~~----~~~~~~~~dl~~~ 127 (166)
T TIGR00347 98 QKYDFVLVEGAGGLCVP----ITEEYTTADLIKL 127 (166)
T ss_pred hcCCEEEEEcCCccccC----CCCCCcHHHHHHH
Confidence 35699999999986542 2233344445554
No 71
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.54 E-value=41 Score=28.24 Aligned_cols=19 Identities=16% Similarity=0.618 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021017 27 WLLAFVSFFTIAFLLTLIYT 46 (318)
Q Consensus 27 wll~~~~~f~~~~l~t~~~t 46 (318)
|+ +|+.||.++|++.+++-
T Consensus 2 W~-l~~iii~~i~l~~~~~~ 20 (130)
T PF12273_consen 2 WV-LFAIIIVAILLFLFLFY 20 (130)
T ss_pred ee-eHHHHHHHHHHHHHHHH
Confidence 54 35555555555444333
No 72
>PRK11670 antiporter inner membrane protein; Provisional
Probab=25.87 E-value=40 Score=33.22 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=12.9
Q ss_pred cccEEEEcCCCCCCC
Q 021017 217 DWDVILIDGPRGDGP 231 (318)
Q Consensus 217 ~WDvImVDgP~Gy~p 231 (318)
++|+|+||.|.|...
T Consensus 215 ~yDyvIID~PPg~gd 229 (369)
T PRK11670 215 DLDYLVLDMPPGTGD 229 (369)
T ss_pred cCCEEEEeCCCCCch
Confidence 689999999998754
No 73
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.57 E-value=36 Score=29.82 Aligned_cols=14 Identities=57% Similarity=0.933 Sum_probs=11.8
Q ss_pred ccEEEEcCCCCCCC
Q 021017 218 WDVILIDGPRGDGP 231 (318)
Q Consensus 218 WDvImVDgP~Gy~p 231 (318)
.|+|+||.|.|..+
T Consensus 115 ~D~viiD~pp~~~~ 128 (246)
T TIGR03371 115 RDWVLIDVPRGPSP 128 (246)
T ss_pred CCEEEEECCCCchH
Confidence 49999999998654
No 74
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=25.21 E-value=20 Score=26.74 Aligned_cols=32 Identities=47% Similarity=0.718 Sum_probs=26.1
Q ss_pred cccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhh
Q 021017 215 EVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARS 249 (318)
Q Consensus 215 e~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~ 249 (318)
+-.|=.|-|+|| |...+.||.|+.|+++ ||.+
T Consensus 3 ~~~~~~i~v~g~-g~~~~~~Gv~a~i~~~--La~~ 34 (65)
T PF13840_consen 3 EEDWAKISVVGP-GLRFDVPGVAAKIFSA--LAEA 34 (65)
T ss_dssp ESEEEEEEEEEE-CGTTTSHHHHHHHHHH--HHHT
T ss_pred cCCEEEEEEEcc-ccCCCcccHHHHHHHH--HHHC
Confidence 457889999999 7777899999999875 5554
No 75
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=24.24 E-value=48 Score=27.23 Aligned_cols=12 Identities=58% Similarity=0.825 Sum_probs=10.7
Q ss_pred cEEEEcCCCCCC
Q 021017 219 DVILIDGPRGDG 230 (318)
Q Consensus 219 DvImVDgP~Gy~ 230 (318)
|+|+||+|.|..
T Consensus 64 d~viiD~p~~~~ 75 (179)
T cd02036 64 DYILIDSPAGIE 75 (179)
T ss_pred CEEEEECCCCCc
Confidence 999999998764
No 76
>COG1278 CspC Cold shock proteins [Transcription]
Probab=23.89 E-value=49 Score=26.20 Aligned_cols=31 Identities=16% Similarity=0.058 Sum_probs=17.6
Q ss_pred CcceEEEecCCchHHHhhhhhhccccccccccCceeeEEee
Q 021017 255 PKTHIFVHDYYRHVERMCGDEFLCKENLVEFNDMLAHFVLE 295 (318)
Q Consensus 255 ~~TdVfVHDvdR~VE~~~s~eFLC~~nlv~~~grL~HF~I~ 295 (318)
|.-|||||.= +.=|.++.-=..|.==.|.|.
T Consensus 23 G~~DvFVH~S----------ai~~~g~~~L~eGQ~V~f~~~ 53 (67)
T COG1278 23 GGKDVFVHIS----------AIQRAGFRTLREGQKVEFEVE 53 (67)
T ss_pred CCcCEEEEee----------eeccCCCcccCCCCEEEEEEe
Confidence 5689999962 233344333345555566664
No 77
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=23.72 E-value=85 Score=26.78 Aligned_cols=30 Identities=10% Similarity=-0.001 Sum_probs=20.6
Q ss_pred CCCcchhhhHHHHhhhcCCCCCcceEEEecCCch
Q 021017 234 PGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRH 267 (318)
Q Consensus 234 PGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~ 267 (318)
+|++++|.++---+.. .+ .-.||||++|++
T Consensus 78 ~G~~~si~~gl~~~~~--~~--~d~vlv~~~D~P 107 (190)
T TIGR03202 78 EGQAHSLKCGLRKAEA--MG--ADAVVILLADQP 107 (190)
T ss_pred hhHHHHHHHHHHHhcc--CC--CCeEEEEeCCCC
Confidence 5889999986543322 12 246999999986
No 78
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=23.66 E-value=3.1e+02 Score=26.01 Aligned_cols=48 Identities=13% Similarity=-0.030 Sum_probs=31.4
Q ss_pred HHHHHhcCCCccEEEec--CCchhhhHhhhccCCcEEEecCChhHHHHhhhhC
Q 021017 109 SDVIRKCSSPCNFLVFG--LTQETLLWKALNHNGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFG--Lg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~ 159 (318)
.+.++. ..+-.+|=.| -|.-++.++. +|++.+-+|-++.-++.++++.
T Consensus 166 ~~~l~~-~~~~~VLDl~cG~G~~sl~la~--~~~~V~gvD~s~~av~~A~~n~ 215 (315)
T PRK03522 166 RDWVRE-LPPRSMWDLFCGVGGFGLHCAT--PGMQLTGIEISAEAIACAKQSA 215 (315)
T ss_pred HHHHHh-cCCCEEEEccCCCCHHHHHHHh--cCCEEEEEeCCHHHHHHHHHHH
Confidence 344443 2356677664 4555555444 6788999999999998887653
No 79
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=23.65 E-value=5.5e+02 Score=23.68 Aligned_cols=84 Identities=12% Similarity=0.058 Sum_probs=53.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhh----hHhhhccCCcEEEecCChhHHH-HhhhhCCCceeEEEEeeccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETL----LWKALNHNGRTVFIDENRYYAA-YFEELHPEIDVFDVQYTTKI 173 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsl----lW~aLN~gGrTvFLeEd~~~i~-~~~~~~p~leay~V~Y~T~~ 173 (318)
.+..++|..+.+.|.+ + .+..|||.|.-.. ++.-|..=|..+..-+|..+.. ......++=-.--+.|.-.-
T Consensus 124 ~l~~~~l~~~~~~i~~--A-~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t 200 (292)
T PRK11337 124 ILDVDEFHRAARFFYQ--A-RQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRT 200 (292)
T ss_pred hcCHHHHHHHHHHHHc--C-CeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCC
Confidence 4677899999999976 3 3567999997664 2333444344444445555443 22223344445557777677
Q ss_pred ccHHHHHHHHhh
Q 021017 174 RETKELIASAKE 185 (318)
Q Consensus 174 ~ea~~LL~~~r~ 185 (318)
.+.-++++.+++
T Consensus 201 ~~~~~~~~~ak~ 212 (292)
T PRK11337 201 SDVIEAVELAKK 212 (292)
T ss_pred HHHHHHHHHHHH
Confidence 788888888885
No 80
>PRK02947 hypothetical protein; Provisional
Probab=23.38 E-value=6e+02 Score=23.55 Aligned_cols=84 Identities=18% Similarity=0.254 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhc-CCCccEEEecCCchhhhHhhhccC-C-----cEE---------------EecCChhHHHH---hh
Q 021017 102 HSELKRISDVIRKC-SSPCNFLVFGLTQETLLWKALNHN-G-----RTV---------------FIDENRYYAAY---FE 156 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~-raPCNfLVFGLg~dsllW~aLN~g-G-----rTv---------------FLeEd~~~i~~---~~ 156 (318)
.++|....+.|..+ +.=-++.|||.|+....=..+-+. | +.+ ++|.++++..+ ..
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~rlg~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYRAGGLAPVNPILEPSLMLHEGAVASSYLERVEGYAKAILDRY 102 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccccccCcccCCCCCHHHhccccHHHHHHhhhcccHHHHHHHHc
Confidence 35566666665331 224589999999876542222221 1 211 22233333222 23
Q ss_pred hhCCCceeEEEEeecccccHHHHHHHHhh
Q 021017 157 ELHPEIDVFDVQYTTKIRETKELIASAKE 185 (318)
Q Consensus 157 ~~~p~leay~V~Y~T~~~ea~~LL~~~r~ 185 (318)
.-.|+=-..-+.|.-.-.+.-++++.+++
T Consensus 103 ~~~~~Dv~i~iS~sG~t~~~i~~~~~a~~ 131 (246)
T PRK02947 103 DIRPGDVLIVVSNSGRNPVPIEMALEAKE 131 (246)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34555566777788777778888888875
No 81
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=23.14 E-value=2.3e+02 Score=26.37 Aligned_cols=64 Identities=16% Similarity=0.221 Sum_probs=40.6
Q ss_pred CCCccEEEecC---CchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 116 SSPCNFLVFGL---TQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 116 raPCNfLVFGL---g~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
+.|.++||.|- |.-++.= .+ .|.+++|++|. |... ....++...-++.+.+..++..+.+....
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~-~~--~~~~~~~~~d~-~~~~-l~g~~~~~v~~~d~~~~~~~~~d~l~~~~ 76 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIK-YL--PGKTLVLSFDM-SSKV-LIGDENVDIADHDDMPPIQAMVEFYVMQN 76 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHH-hc--CCCCEEEeccc-cchh-ccCCCCCceeecCCCCCHHHHHHHHHHHH
Confidence 57899999964 6666442 33 48899999988 4333 33445555555556666666666665444
No 82
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=22.95 E-value=2.8e+02 Score=27.58 Aligned_cols=90 Identities=16% Similarity=0.319 Sum_probs=69.7
Q ss_pred CCcCCCHHHHHHHHHHHHhcCCCccEEEe------cCCchhh--hHhhhccCCcEEEecCChhHHHHhhhhCCCc-----
Q 021017 96 DSYHMTHSELKRISDVIRKCSSPCNFLVF------GLTQETL--LWKALNHNGRTVFIDENRYYAAYFEELHPEI----- 162 (318)
Q Consensus 96 ~tpqqt~~Ei~~~~~vL~~~raPCNfLVF------GLg~dsl--lW~aLN~gGrTvFLeEd~~~i~~~~~~~p~l----- 162 (318)
..|..|.+|+....+.+++...++.++|+ |++.|.. +-+.+|..|..|.||-|......+.+..|.+
T Consensus 107 ~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg~~L~~~L~~~P~lIKPN~ 186 (310)
T COG1105 107 PGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSGEALLAALEAKPWLIKPNR 186 (310)
T ss_pred CCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECChHHHHHHHccCCcEEecCH
Confidence 34699999999999999986779999999 5777754 5567777899999999999987777666655
Q ss_pred eeEEEEeecccccHHHHHHHHhh
Q 021017 163 DVFDVQYTTKIRETKELIASAKE 185 (318)
Q Consensus 163 eay~V~Y~T~~~ea~~LL~~~r~ 185 (318)
+=...-+.+++.+-.|.++.+++
T Consensus 187 ~EL~~~~g~~~~~~~d~i~~a~~ 209 (310)
T COG1105 187 EELEALFGRELTTLEDVIKAARE 209 (310)
T ss_pred HHHHHHhCCCCCChHHHHHHHHH
Confidence 33334466777777777777774
No 83
>PRK10037 cell division protein; Provisional
Probab=22.92 E-value=49 Score=29.90 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.6
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+.|+|+||.|.|..
T Consensus 116 ~~yD~iiIDtpp~~~ 130 (250)
T PRK10037 116 GRYQWILLDLPRGAS 130 (250)
T ss_pred CCCCEEEEECCCCcc
Confidence 468999999999854
No 84
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=22.75 E-value=6.3e+02 Score=23.76 Aligned_cols=103 Identities=20% Similarity=0.281 Sum_probs=73.8
Q ss_pred CHHHHHHHhhhhccC-C-CCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchhh-----hHhhhccCCcEEEecCChhHH
Q 021017 80 PTTVINTLLLYASRS-N-DSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETL-----LWKALNHNGRTVFIDENRYYA 152 (318)
Q Consensus 80 p~~v~~ALvhYAt~s-n-~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsl-----lW~aLN~gGrTvFLeEd~~~i 152 (318)
|..+++.++.....+ . ..-....++|....+.|.+++ +..+||+|.-.+ .|+-..-|-+.+.+++...-.
T Consensus 93 ~~~~~~~~~~~~~~~l~~t~~~l~~~~l~~av~~L~~A~---rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~ 169 (281)
T COG1737 93 PESILEKLLAANIAALERTLNLLDEEALERAVELLAKAR---RIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQL 169 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCC---eEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHH
Confidence 344556666555422 1 223678899999999998744 788899887554 455555566666666666656
Q ss_pred HHhhhhCCCceeEEEEeecccccHHHHHHHHhh
Q 021017 153 AYFEELHPEIDVFDVQYTTKIRETKELIASAKE 185 (318)
Q Consensus 153 ~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r~ 185 (318)
.++..-.|+=-.--+.|+-.-+|--++++.+|+
T Consensus 170 ~~~~~~~~~Dv~i~iS~sG~t~e~i~~a~~ak~ 202 (281)
T COG1737 170 MQLALLTPGDVVIAISFSGYTREIVEAAELAKE 202 (281)
T ss_pred HHHHhCCCCCEEEEEeCCCCcHHHHHHHHHHHH
Confidence 688888899888889999888888888888886
No 85
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium. The reaction is an aldo-keto isomerization coupled with an amination or deamination. It is the last step of the metabolic pathway of N-acetyl-D-glucosamine-6-phosphate (GlcNAc6P). GlcN6P deaminase is a hexameric enzyme that is allosterically activated by GlcNAc6P.
Probab=22.73 E-value=1.2e+02 Score=26.78 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=24.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEecCCchh
Q 021017 100 MTHSELKRISDVIRKCSSPCNFLVFGLTQET 130 (318)
Q Consensus 100 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~ds 130 (318)
....+.....++|++ ..++.+.|+|+|.|.
T Consensus 99 ~~~~~~~~~~~~l~~-~~~~Dl~llGiG~dg 128 (232)
T cd01399 99 DLEAECRRYEALIAE-AGGIDLQLLGIGENG 128 (232)
T ss_pred CHHHHHHHHHHHHHH-cCCCCEEEECCCCCc
Confidence 346677788899987 568999999999975
No 86
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=22.49 E-value=50 Score=30.05 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHh--cCCCccEEEe-----cCCchhh----hHhhhccCCcEEEecCChh
Q 021017 102 HSELKRISDVIRK--CSSPCNFLVF-----GLTQETL----LWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 102 ~~Ei~~~~~vL~~--~raPCNfLVF-----GLg~dsl----lW~aLN~gGrTvFLeEd~~ 150 (318)
.++++.+..-|.. ...+++.+.| |-|.-+. -++.-..|-|++.+|-|..
T Consensus 84 ~e~~~~l~~~l~~~~~~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D~~ 143 (274)
T TIGR03029 84 VEALRALRSQLMLRWFSEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDANLR 143 (274)
T ss_pred HHHHHHHHHHhhhhccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCCC
Confidence 3456666555532 1346666555 4455442 2222234668999998753
No 87
>PRK09620 hypothetical protein; Provisional
Probab=21.91 E-value=2.7e+02 Score=25.81 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=50.7
Q ss_pred CcEEEecCChhHHHHhhhhCCCceeEEEEeeccccc-HHHHHHHHhhhcCCCCccccccccccccccc-CCCCccccccc
Q 021017 140 GRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRE-TKELIASAKEQIRNECKPVQNLLFSECKLGI-NDLPNHVYEVD 217 (318)
Q Consensus 140 GrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~e-a~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl-~~LP~evYe~~ 217 (318)
..++-|+.+|+-++.+++..|+ .+-|-|--...+ -++|++.+++. +....|-+-+ |++ .+.+..+
T Consensus 124 ~~~l~L~~~pdIl~~l~~~~~~--~~~vGFkaEt~~~~~~l~~~A~~k----------l~~k~~D~ivaN~~-~~~~g~~ 190 (229)
T PRK09620 124 APIIHFQKAPKVLKQIKQWDPE--TVLVGFKLESDVNEEELFERAKNR----------MEEAKASVMIANSP-HSLYSRG 190 (229)
T ss_pred CCeEEEEECcHHHHHHHhhCCC--CEEEEEEeccCCCHHHHHHHHHHH----------HHHcCCCEEEECCc-ccccCCC
Confidence 4589999999999999987785 567777654433 45788888743 2234455543 333 4566776
Q ss_pred ccEEEEcCCCC
Q 021017 218 WDVILIDGPRG 228 (318)
Q Consensus 218 WDvImVDgP~G 228 (318)
-.+++||. .|
T Consensus 191 ~~~~ii~~-~~ 200 (229)
T PRK09620 191 AMHYVIGQ-DG 200 (229)
T ss_pred cEEEEEeC-CC
Confidence 67888885 44
No 88
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=21.85 E-value=61 Score=23.12 Aligned_cols=13 Identities=54% Similarity=0.818 Sum_probs=11.5
Q ss_pred cEEEEcCCCCCCC
Q 021017 219 DVILIDGPRGDGP 231 (318)
Q Consensus 219 DvImVDgP~Gy~p 231 (318)
|+|+||+|.+...
T Consensus 35 d~iivD~~~~~~~ 47 (99)
T cd01983 35 DYVLIDTPPGLGL 47 (99)
T ss_pred CEEEEeCCCCccc
Confidence 9999999988754
No 89
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=21.81 E-value=1.2e+02 Score=28.49 Aligned_cols=49 Identities=10% Similarity=0.104 Sum_probs=34.1
Q ss_pred cCCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCCceeE
Q 021017 115 CSSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPEIDVF 165 (318)
Q Consensus 115 ~raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~leay 165 (318)
..++..++|||=||+..-.+.+-+ |=+.+-+|+.+++... ..+|+.+.+
T Consensus 97 ~~p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~~~--~~~~~~~~~ 147 (246)
T TIGR02964 97 APPAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEFPE--DLPDGVATL 147 (246)
T ss_pred cCCCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccccc--cCCCCceEE
Confidence 356799999999999998887765 4466666777775533 334555433
No 90
>CHL00175 minD septum-site determining protein; Validated
Probab=21.71 E-value=52 Score=30.02 Aligned_cols=14 Identities=50% Similarity=0.771 Sum_probs=12.3
Q ss_pred cccEEEEcCCCCCC
Q 021017 217 DWDVILIDGPRGDG 230 (318)
Q Consensus 217 ~WDvImVDgP~Gy~ 230 (318)
+.|+|+||.|.|..
T Consensus 126 ~yD~VIiDtpp~~~ 139 (281)
T CHL00175 126 GYDYILIDCPAGID 139 (281)
T ss_pred CCCEEEEeCCCCCC
Confidence 68999999999864
No 91
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=21.64 E-value=90 Score=31.18 Aligned_cols=20 Identities=20% Similarity=0.527 Sum_probs=17.7
Q ss_pred chhhhHhhhccCCcEEEecC
Q 021017 128 QETLLWKALNHNGRTVFIDE 147 (318)
Q Consensus 128 ~dsllW~aLN~gGrTvFLeE 147 (318)
.+-++|-+.|-.|.+++++=
T Consensus 152 ~~~i~WV~v~i~GTrl~i~v 171 (382)
T TIGR02876 152 VPEIMWAGVRVRGTTLVIKV 171 (382)
T ss_pred CCCcEEEEEEEEeEEEEEEE
Confidence 57899999999999999873
No 92
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=21.61 E-value=6.6e+02 Score=23.36 Aligned_cols=45 Identities=18% Similarity=0.414 Sum_probs=29.0
Q ss_pred ccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhh-HHHHhh
Q 021017 201 ECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFT-AGVLAR 248 (318)
Q Consensus 201 ~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyT-AavmAR 248 (318)
++-.++-.+|..+-+...|++++++-+.+.+ || ++.|+. -.++.+
T Consensus 175 D~a~~~~~~~~~~~~~~~d~~~~s~~K~~~~--~g-~g~~~~~~~~~~~ 220 (373)
T cd06453 175 DGAQSAGHMPVDVQDLGCDFLAFSGHKMLGP--TG-IGVLYGKEELLEE 220 (373)
T ss_pred EhhhhcCceeeeccccCCCEEEeccccccCC--CC-cEEEEEchHHhhc
Confidence 3434444556556667789999999998876 54 676664 344333
No 93
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.60 E-value=92 Score=30.57 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhc
Q 021017 24 NRLWLLAFVSFFTIAFLLTLIYTR 47 (318)
Q Consensus 24 ~r~wll~~~~~f~~~~l~t~~~t~ 47 (318)
+|-|||+|+|+++++.++.+....
T Consensus 251 ~ra~fli~lgvLafi~~i~lM~rl 274 (299)
T KOG3970|consen 251 KRALFLIFLGVLAFITIIMLMKRL 274 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999888888775443
No 94
>PF12317 IFT46_B_C: Intraflagellar transport complex B protein 46 C terminal; InterPro: IPR022088 This entry represents proteins is found in eukaryotes. Proteins are typically between 298 and 416 amino acids in length. It is thought to be a flagellar protein of complex B and like all IFT proteins, it is required for transport of IFT particles into the flagella [].
Probab=21.59 E-value=69 Score=30.49 Aligned_cols=36 Identities=19% Similarity=0.260 Sum_probs=31.8
Q ss_pred hhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 149 RYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 149 ~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
..||+.+++-|-.=-.+.|.|+..+-+-+.||+.--
T Consensus 119 d~WI~~i~elHr~kp~~tV~Y~~~mPdId~LMqeWP 154 (214)
T PF12317_consen 119 DKWIESIEELHRSKPPPTVHYSKPMPDIDTLMQEWP 154 (214)
T ss_pred HHHHHHHHHHHhcCCCCceecCCCCCCHHHHHHHCc
Confidence 579999999998888899999999999999997543
No 95
>PF04250 DUF429: Protein of unknown function (DUF429); InterPro: IPR007362 This is a family of uncharacterised proteins.
Probab=21.59 E-value=67 Score=28.46 Aligned_cols=19 Identities=32% Similarity=0.370 Sum_probs=15.3
Q ss_pred cccEEEEcCCCCCCCCCCCC
Q 021017 217 DWDVILIDGPRGDGPDGPGR 236 (318)
Q Consensus 217 ~WDvImVDgP~Gy~peaPGR 236 (318)
+ ++|.||+|=|+.++..+|
T Consensus 41 ~-~~v~IDaPlgl~~~~~~R 59 (209)
T PF04250_consen 41 P-AVVGIDAPLGLPNESGRR 59 (209)
T ss_pred C-cEEEEEcCcccCCCCCCc
Confidence 5 899999999995565555
No 96
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=21.43 E-value=72 Score=27.99 Aligned_cols=15 Identities=27% Similarity=0.601 Sum_probs=12.7
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+-|+|+||||-|..
T Consensus 102 ~~~D~viIEg~gg~~ 116 (222)
T PRK00090 102 QQYDLVLVEGAGGLL 116 (222)
T ss_pred hhCCEEEEECCCcee
Confidence 457999999999875
No 97
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=21.20 E-value=84 Score=25.96 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=20.9
Q ss_pred cccccccc----CCCCcccccccccEEEEcCCCCCC
Q 021017 199 FSECKLGI----NDLPNHVYEVDWDVILIDGPRGDG 230 (318)
Q Consensus 199 ~S~CkLAl----~~LP~evYe~~WDvImVDgP~Gy~ 230 (318)
...|-.+- +.+=+++-....|.++||.|.|.-
T Consensus 64 ~~g~~~~~n~~~~~~l~~~~~~~~~~vivDt~ag~e 99 (116)
T cd02034 64 GEGCYCPENALLNALLRHLVLTRDEQVVVDTEAGLE 99 (116)
T ss_pred CCCCEehhhHHHHHHHHHeEccCCCEEEEecHHHHH
Confidence 34455544 444444455678999999998763
No 98
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=20.92 E-value=4.9e+02 Score=23.13 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred ccccccccEEEEcCCCCCCCC-CCCCcchhhhHHHHhhhcCCCCCcceEEEecCCchHHHhhhh-hhccccccc----cc
Q 021017 212 HVYEVDWDVILIDGPRGDGPD-GPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCGD-EFLCKENLV----EF 285 (318)
Q Consensus 212 evYe~~WDvImVDgP~Gy~pe-aPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s~-eFLC~~nlv----~~ 285 (318)
.+-+.+=|+|+||.|+..... .+..|..+.. .+-+-++.| .|=+++++-....++...+ ++++++-.. +.
T Consensus 115 ~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~--~l~~l~~~g--~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~~~~ 190 (234)
T PRK06067 115 FIKSKREDVIIIDSLTIFATYAEEDDILNFLT--EAKNLVDLG--KTILITLHPYAFSEELLSRIRSICDVYLKLRAEQI 190 (234)
T ss_pred HHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH--HHHHHHhCC--CEEEEEecCCcCCHHHHHHHHhheEEEEEEEeecc
Confidence 333345689999999955321 1222222212 121112223 4667776655544444343 788875431 12
Q ss_pred cCce-eeEEeecCCC
Q 021017 286 NDML-AHFVLEKMDE 299 (318)
Q Consensus 286 ~grL-~HF~I~~~~~ 299 (318)
.|++ ++=.|.++.+
T Consensus 191 ~~~~~r~l~i~K~Rg 205 (234)
T PRK06067 191 GGRYVKVLEVVKLRG 205 (234)
T ss_pred CCEEeEEEEEEhhcC
Confidence 3555 4455665543
No 99
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=20.92 E-value=3.9e+02 Score=23.74 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=22.1
Q ss_pred CccEEEecCCc--hhhhHhhhccCCcEEEecC
Q 021017 118 PCNFLVFGLTQ--ETLLWKALNHNGRTVFIDE 147 (318)
Q Consensus 118 PCNfLVFGLg~--dsllW~aLN~gGrTvFLeE 147 (318)
-.+.||.|.|. ..++=+.|...|-+|.+=.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~ 75 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCH 75 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEE
Confidence 47899999995 6667888877775665443
No 100
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=20.88 E-value=62 Score=23.63 Aligned_cols=47 Identities=19% Similarity=0.198 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCcceEEEecCCch
Q 021017 220 VILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYYRH 267 (318)
Q Consensus 220 vImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvdR~ 267 (318)
+|-|+-..|..+|-=-+++.-.|.++..--..+. ..+.|++.|+++.
T Consensus 3 ~i~i~~~~Grs~EqK~~L~~~it~a~~~~~~~p~-~~v~V~i~ev~~~ 49 (60)
T PRK02289 3 FVRIDLFEGRSQEQKNALAREVTEVVSRIAKAPK-EAIHVFINDMPEG 49 (60)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcCc-ceEEEEEEEeChh
Confidence 4667877788888888998889988888776654 4799999999874
No 101
>PHA02913 TGF-beta-like protein; Provisional
Probab=20.78 E-value=50 Score=30.39 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=17.1
Q ss_pred CCCCccc-ccccccEEEEcCCCCCCC
Q 021017 207 NDLPNHV-YEVDWDVILIDGPRGDGP 231 (318)
Q Consensus 207 ~~LP~ev-Ye~~WDvImVDgP~Gy~p 231 (318)
++|==.+ =|+-||+|+ +|+||.+
T Consensus 80 ~~lyVDF~~dIGWdWII--APkgY~A 103 (172)
T PHA02913 80 RDFNIDFKADMGMKWIL--KPEGTHA 103 (172)
T ss_pred EEEEechhhccCcceEe--cCCCeee
Confidence 4444456 588999887 8999954
No 102
>PRK07340 ornithine cyclodeaminase; Validated
Probab=20.49 E-value=3.6e+02 Score=25.76 Aligned_cols=116 Identities=9% Similarity=0.071 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEecCCchhhh--Hhhhc-cCCcEEEe-cCChhHHHHhhhhCCCceeEEEEeeccccc
Q 021017 100 MTHSELKRISDVIRKCSSPCNFLVFGLTQETLL--WKALN-HNGRTVFI-DENRYYAAYFEELHPEIDVFDVQYTTKIRE 175 (318)
Q Consensus 100 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll--W~aLN-~gGrTvFL-eEd~~~i~~~~~~~p~leay~V~Y~T~~~e 175 (318)
-|.+==.+..+.|.+ ..+.+++|||.|.+..+ .+... .+-+.|++ .-+++-.+.+.++.... -..+. +.+
T Consensus 108 RTaA~sala~~~La~-~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~-~~~~~----~~~ 181 (304)
T PRK07340 108 RTAAVSLLAARTLAP-APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL-GPTAE----PLD 181 (304)
T ss_pred HHHHHHHHHHHHhCC-CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc-CCeeE----ECC
Confidence 344434455677776 67889999999988643 22212 23344443 55555544444443211 01122 355
Q ss_pred HHHHHHHHhhhcCCCCccccccccc-c------------cccccCCCCcccccccccEEEEcC
Q 021017 176 TKELIASAKEQIRNECKPVQNLLFS-E------------CKLGINDLPNHVYEVDWDVILIDG 225 (318)
Q Consensus 176 a~~LL~~~r~~~~~~C~p~~~~~~S-~------------CkLAl~~LP~evYe~~WDvImVDg 225 (318)
.+++++.+.-- --|.|...+.+. . -+-..+.||.++.... + |+||-
T Consensus 182 ~~~av~~aDiV--itaT~s~~Pl~~~~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~-v~vD~ 240 (304)
T PRK07340 182 GEAIPEAVDLV--VTATTSRTPVYPEAARAGRLVVAVGAFTPDMAELAPRTVRGS-R-LYVDD 240 (304)
T ss_pred HHHHhhcCCEE--EEccCCCCceeCccCCCCCEEEecCCCCCCcccCCHHHHhhC-e-EEEcC
Confidence 56666544321 125554433211 1 1123456777777766 4 45564
No 103
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=20.41 E-value=2.1e+02 Score=23.56 Aligned_cols=107 Identities=22% Similarity=0.290 Sum_probs=63.4
Q ss_pred CCccEEEe--cCCchhhhHh-hhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHhhhcCCCCcc
Q 021017 117 SPCNFLVF--GLTQETLLWK-ALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAKEQIRNECKP 193 (318)
Q Consensus 117 aPCNfLVF--GLg~dsllW~-aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r~~~~~~C~p 193 (318)
...++|=+ |-|+.+..++ .++++++.+-+|=++..|+.+++. ++...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~---------------------~~~~~--------- 52 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKR---------------------AKELG--------- 52 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHH---------------------HHHTT---------
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcc---------------------ccccc---------
Confidence 45666666 4567777777 678899999999999999887763 11000
Q ss_pred cccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhcCCCCCcceEEEecCC
Q 021017 194 VQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSKKGGNPKTHIFVHDYY 265 (318)
Q Consensus 194 ~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r~~g~~~TdVfVHDvd 265 (318)
..+..+-.+ -+.+||.+ |+-+.|+|+.+++-.+++. ..-.---+.|.-+.| .-+++.|..
T Consensus 53 ~~ni~~~~~--d~~~l~~~-~~~~~D~I~~~~~l~~~~~------~~~~l~~~~~~lk~~---G~~i~~~~~ 112 (152)
T PF13847_consen 53 LDNIEFIQG--DIEDLPQE-LEEKFDIIISNGVLHHFPD------PEKVLKNIIRLLKPG---GILIISDPN 112 (152)
T ss_dssp STTEEEEES--BTTCGCGC-SSTTEEEEEEESTGGGTSH------HHHHHHHHHHHEEEE---EEEEEEEEE
T ss_pred ccccceEEe--ehhccccc-cCCCeeEEEEcCchhhccC------HHHHHHHHHHHcCCC---cEEEEEECC
Confidence 111111111 12446766 6678999999988755441 112222444443332 357777777
No 104
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=20.26 E-value=5.6e+02 Score=21.98 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=40.4
Q ss_pred CCHHHHHHHHHHHHhcCCCccEEEecCCchhhhH-------hhhccCCcEEEecCC--hhHHHHhhhhC--CCceeEEEE
Q 021017 100 MTHSELKRISDVIRKCSSPCNFLVFGLTQETLLW-------KALNHNGRTVFIDEN--RYYAAYFEELH--PEIDVFDVQ 168 (318)
Q Consensus 100 qt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW-------~aLN~gGrTvFLeEd--~~~i~~~~~~~--p~leay~V~ 168 (318)
+..++|....+-+++-+.-=|++++|.|-.++.. ..+...|..||...+ +..+..+.... .+.-.--+.
T Consensus 2 ~~~~~i~~~~~~i~~~~~~~~iv~~GiGGS~lg~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~~tlvi~iS 81 (158)
T cd05015 2 AELERIKEFAEKVRSGKKITDVVVIGIGGSDLGPRAVYEALKPYFKGGLRLHFVSNVDPDDLAELLKKLDPETTLFIVIS 81 (158)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEEecCccHHHHHHHHHHHHhhccCCceEEEEeCCCHHHHHHHHHhCCcccEEEEEEE
Confidence 3455666666666431234578888999977722 223345788877777 55555555432 333344445
Q ss_pred ee
Q 021017 169 YT 170 (318)
Q Consensus 169 Y~ 170 (318)
+.
T Consensus 82 kS 83 (158)
T cd05015 82 KS 83 (158)
T ss_pred CC
Confidence 54
No 105
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=20.25 E-value=55 Score=32.60 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHh------------cCC---CccEEEe-----cCCchhhh---Hhhhc-cCCcEEEecCChh
Q 021017 99 HMTHSELKRISDVIRK------------CSS---PCNFLVF-----GLTQETLL---WKALN-HNGRTVFIDENRY 150 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~------------~ra---PCNfLVF-----GLg~dsll---W~aLN-~gGrTvFLeEd~~ 150 (318)
..|.+||..+.+++.. -|. ++..+.| |.|.-+.- -..|. .|-|++.+|-||.
T Consensus 86 ~yt~~di~~lr~~l~~~~~~~~~~~~~~~r~~~~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 86 FYTLGQINEIRQMLAGSTRGRESIDFVPHRRGSEHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred eecHHHHHHHHHHHHhhccccccccccCCCCCCCCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 3789999999999962 132 2355555 66666521 12333 3668899999986
Done!