Query 021017
Match_columns 318
No_of_seqs 96 out of 98
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 11:31:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cvo_A Methyltransferase-like 97.0 0.008 2.7E-07 53.2 12.1 163 98-296 14-184 (202)
2 3c6k_A Spermine synthase; sper 93.9 0.23 7.9E-06 48.1 9.4 148 116-295 204-375 (381)
3 2qfm_A Spermine synthase; sper 93.5 0.29 1E-05 47.1 9.2 83 117-227 188-277 (364)
4 3o4f_A Spermidine synthase; am 87.9 2 7E-05 39.9 8.8 50 110-160 77-128 (294)
5 3gjy_A Spermidine synthase; AP 86.6 1.2 4.2E-05 41.6 6.5 44 118-161 90-135 (317)
6 3u81_A Catechol O-methyltransf 85.0 2.8 9.4E-05 34.9 7.3 79 79-158 21-102 (221)
7 2i7c_A Spermidine synthase; tr 84.6 3.9 0.00013 36.3 8.6 46 116-161 77-124 (283)
8 2b2c_A Spermidine synthase; be 81.6 6.5 0.00022 35.9 9.0 46 116-161 107-154 (314)
9 1iy9_A Spermidine synthase; ro 81.5 8 0.00027 34.2 9.3 45 116-160 74-120 (275)
10 1uir_A Polyamine aminopropyltr 77.7 6.9 0.00024 35.3 7.8 45 116-160 76-122 (314)
11 3cbg_A O-methyltransferase; cy 77.1 11 0.00039 31.7 8.5 77 80-158 35-116 (232)
12 2gpy_A O-methyltransferase; st 76.3 10 0.00036 31.4 7.9 77 80-158 19-97 (233)
13 1mjf_A Spermidine synthase; sp 75.9 13 0.00044 32.8 8.8 44 116-159 74-118 (281)
14 3adn_A Spermidine synthase; am 75.8 9 0.00031 34.6 8.0 45 116-160 82-128 (294)
15 2o07_A Spermidine synthase; st 75.5 3.7 0.00013 37.2 5.4 45 116-160 94-140 (304)
16 2pt6_A Spermidine synthase; tr 73.9 10 0.00035 34.6 7.9 46 116-161 115-162 (321)
17 2hnk_A SAM-dependent O-methylt 73.7 14 0.00048 30.9 8.2 78 80-159 23-105 (239)
18 3dr5_A Putative O-methyltransf 71.8 18 0.00063 30.7 8.6 77 80-158 18-100 (221)
19 3c3p_A Methyltransferase; NP_9 71.8 17 0.00059 29.6 8.1 76 81-158 22-100 (210)
20 2avd_A Catechol-O-methyltransf 69.3 26 0.00088 28.7 8.7 78 80-158 32-113 (229)
21 3c3y_A Pfomt, O-methyltransfer 69.0 29 0.001 29.4 9.2 78 80-159 33-115 (237)
22 1sui_A Caffeoyl-COA O-methyltr 66.7 22 0.00077 30.6 8.1 78 80-159 42-124 (247)
23 3hm2_A Precorrin-6Y C5,15-meth 64.9 18 0.00062 28.0 6.6 60 98-158 6-68 (178)
24 3ntv_A MW1564 protein; rossman 64.0 12 0.0004 31.6 5.7 75 82-158 38-114 (232)
25 3duw_A OMT, O-methyltransferas 63.3 26 0.00088 28.6 7.5 76 81-158 22-102 (223)
26 1l3i_A Precorrin-6Y methyltran 62.8 26 0.00091 27.0 7.1 64 94-158 10-74 (192)
27 2oyr_A UPF0341 protein YHIQ; a 60.6 11 0.00036 34.0 5.1 48 107-157 77-128 (258)
28 3tr6_A O-methyltransferase; ce 56.1 35 0.0012 27.8 7.1 79 80-159 26-109 (225)
29 3tfw_A Putative O-methyltransf 55.6 46 0.0016 28.3 8.0 76 81-158 27-107 (248)
30 3sho_A Transcriptional regulat 54.5 82 0.0028 25.2 9.2 84 99-185 23-112 (187)
31 1vl5_A Unknown conserved prote 53.2 19 0.00065 30.2 5.1 59 99-158 20-78 (260)
32 3cgg_A SAM-dependent methyltra 50.1 51 0.0018 25.4 6.9 46 116-161 45-90 (195)
33 3e05_A Precorrin-6Y C5,15-meth 49.7 29 0.00098 28.0 5.5 60 98-158 21-83 (204)
34 3h2b_A SAM-dependent methyltra 48.5 46 0.0016 26.5 6.5 57 103-161 29-85 (203)
35 2cmg_A Spermidine synthase; tr 48.3 35 0.0012 30.2 6.3 46 116-161 71-116 (262)
36 3i9f_A Putative type 11 methyl 48.2 19 0.00064 28.0 4.0 52 108-160 9-60 (170)
37 1u94_A RECA protein, recombina 48.0 32 0.0011 32.1 6.3 54 217-272 141-207 (356)
38 3pfg_A N-methyltransferase; N, 47.8 81 0.0028 26.3 8.2 61 102-162 34-95 (263)
39 3io3_A DEHA2D07832P; chaperone 45.4 17 0.00058 33.9 3.9 34 117-150 16-59 (348)
40 3ou2_A SAM-dependent methyltra 43.8 79 0.0027 25.1 7.2 53 105-157 34-86 (218)
41 2p7i_A Hypothetical protein; p 43.6 1.2E+02 0.004 24.4 8.3 57 104-160 29-85 (250)
42 3hnr_A Probable methyltransfer 43.4 82 0.0028 25.3 7.3 57 103-160 32-88 (220)
43 2yxd_A Probable cobalt-precorr 42.3 1.1E+02 0.0038 23.3 8.0 60 98-158 17-76 (183)
44 3bxo_A N,N-dimethyltransferase 42.1 82 0.0028 25.5 7.1 60 103-162 25-85 (239)
45 3kjh_A CO dehydrogenase/acetyl 41.5 12 0.00039 30.7 1.9 17 215-231 129-145 (254)
46 3p9n_A Possible methyltransfer 41.1 1.2E+02 0.0041 24.0 7.9 54 106-159 31-87 (189)
47 1g3q_A MIND ATPase, cell divis 40.7 11 0.00039 31.0 1.8 15 216-230 110-124 (237)
48 1byi_A Dethiobiotin synthase; 40.7 11 0.00038 30.8 1.7 14 217-230 108-121 (224)
49 3mb5_A SAM-dependent methyltra 39.9 75 0.0026 26.4 6.8 60 98-158 75-137 (255)
50 3m33_A Uncharacterized protein 39.6 1.2E+02 0.004 25.0 7.8 48 116-163 47-94 (226)
51 3e8s_A Putative SAM dependent 38.6 1.1E+02 0.0038 24.2 7.3 54 104-158 40-93 (227)
52 2ph1_A Nucleotide-binding prot 38.1 13 0.00045 31.8 1.8 16 216-231 127-142 (262)
53 2yvl_A TRMI protein, hypotheti 37.0 68 0.0023 26.3 5.9 59 99-158 74-132 (248)
54 1p91_A Ribosomal RNA large sub 36.9 1E+02 0.0036 25.7 7.2 55 107-161 73-131 (269)
55 2qy6_A UPF0209 protein YFCK; s 36.6 36 0.0012 30.3 4.5 71 81-162 35-122 (257)
56 1dus_A MJ0882; hypothetical pr 34.8 85 0.0029 24.1 5.9 55 103-158 39-93 (194)
57 3jwh_A HEN1; methyltransferase 34.2 1.1E+02 0.0038 24.7 6.8 60 99-159 12-73 (217)
58 3jwg_A HEN1, methyltransferase 34.2 1.2E+02 0.0043 24.3 7.1 60 99-159 12-73 (219)
59 3dtn_A Putative methyltransfer 34.1 64 0.0022 26.3 5.3 60 102-161 29-90 (234)
60 3n53_A Response regulator rece 34.0 60 0.0021 23.8 4.7 38 141-180 5-42 (140)
61 4dzz_A Plasmid partitioning pr 34.0 16 0.00055 29.2 1.6 14 217-230 75-88 (206)
62 2e7j_A SEP-tRNA:Cys-tRNA synth 33.6 1.6E+02 0.0055 25.1 8.0 16 77-92 19-34 (371)
63 2pwy_A TRNA (adenine-N(1)-)-me 33.3 1.1E+02 0.0039 25.1 6.8 62 96-158 76-140 (258)
64 3r3h_A O-methyltransferase, SA 33.3 33 0.0011 29.4 3.6 76 81-158 24-104 (242)
65 3njr_A Precorrin-6Y methylase; 32.9 99 0.0034 25.5 6.4 59 99-158 37-96 (204)
66 1inl_A Spermidine synthase; be 32.2 1.7E+02 0.0057 26.0 8.1 45 116-160 89-135 (296)
67 3ccf_A Cyclopropane-fatty-acyl 31.1 1.1E+02 0.0038 25.8 6.5 52 109-161 50-101 (279)
68 1hyq_A MIND, cell division inh 31.0 20 0.00067 30.2 1.7 15 216-230 109-123 (263)
69 3lte_A Response regulator; str 31.0 45 0.0015 24.1 3.5 43 138-184 5-47 (132)
70 3ea0_A ATPase, para family; al 30.9 14 0.00049 30.4 0.9 15 217-231 118-132 (245)
71 1wzn_A SAM-dependent methyltra 30.2 1.5E+02 0.005 24.4 7.0 59 100-158 22-82 (252)
72 3bwc_A Spermidine synthase; SA 30.1 1.6E+02 0.0053 26.2 7.6 45 116-160 94-140 (304)
73 1rjd_A PPM1P, carboxy methyl t 30.0 48 0.0016 30.7 4.3 42 111-153 92-134 (334)
74 2oze_A ORF delta'; para, walke 29.8 19 0.00064 31.1 1.5 52 98-151 16-77 (298)
75 1vbf_A 231AA long hypothetical 29.6 1.1E+02 0.0038 24.8 6.1 59 102-161 56-114 (231)
76 2igt_A SAM dependent methyltra 29.3 1.5E+02 0.0052 26.9 7.5 54 106-159 142-195 (332)
77 1wcv_1 SOJ, segregation protei 29.1 23 0.00078 30.1 1.8 15 216-230 110-124 (257)
78 2woo_A ATPase GET3; tail-ancho 29.0 21 0.00072 32.3 1.7 34 117-150 17-58 (329)
79 2xj4_A MIPZ; replication, cell 28.8 20 0.00069 31.2 1.5 15 216-230 102-116 (286)
80 3cwq_A Para family chromosome 28.8 18 0.00061 30.3 1.1 16 216-231 66-82 (209)
81 3q9l_A Septum site-determining 28.6 23 0.00078 29.5 1.7 14 217-230 113-126 (260)
82 3f6c_A Positive transcription 28.2 76 0.0026 22.9 4.4 40 141-181 3-43 (134)
83 2xhz_A KDSD, YRBH, arabinose 5 28.2 2.1E+02 0.0073 22.6 7.4 84 99-185 33-121 (183)
84 3ez9_A Para; DNA binding, wing 27.5 21 0.00073 32.8 1.5 51 100-150 87-157 (403)
85 3ug7_A Arsenical pump-driving 27.3 26 0.00088 32.1 2.0 35 116-150 23-65 (349)
86 3hdg_A Uncharacterized protein 27.3 54 0.0018 23.9 3.4 40 141-184 9-48 (137)
87 2p35_A Trans-aconitate 2-methy 27.2 1.1E+02 0.0039 25.0 5.8 47 116-162 32-80 (259)
88 2p8j_A S-adenosylmethionine-de 27.2 1.1E+02 0.0037 24.3 5.4 54 105-158 11-65 (209)
89 3nhm_A Response regulator; pro 27.1 66 0.0023 23.2 3.8 40 140-184 5-44 (133)
90 1y8c_A S-adenosylmethionine-de 26.9 1.8E+02 0.0063 23.3 6.9 60 99-158 18-78 (246)
91 3k9g_A PF-32 protein; ssgcid, 26.8 22 0.00075 30.2 1.3 15 216-230 143-157 (267)
92 2woj_A ATPase GET3; tail-ancho 26.4 19 0.00065 33.3 0.9 33 118-150 17-59 (354)
93 1o54_A SAM-dependent O-methylt 26.4 1.5E+02 0.0051 25.2 6.5 60 98-158 94-156 (277)
94 3e23_A Uncharacterized protein 26.3 1.3E+02 0.0043 24.1 5.8 54 105-158 31-84 (211)
95 1i9g_A Hypothetical protein RV 26.0 1.7E+02 0.0057 24.6 6.7 59 99-158 82-143 (280)
96 3ez2_A Plasmid partition prote 25.6 22 0.00076 32.5 1.2 52 99-150 83-154 (398)
97 3zrp_A Serine-pyruvate aminotr 25.6 2.2E+02 0.0076 24.2 7.5 107 75-184 9-124 (384)
98 3g5t_A Trans-aconitate 3-methy 25.6 2.3E+02 0.0077 24.3 7.6 56 101-158 22-80 (299)
99 3c0k_A UPF0064 protein YCCW; P 25.2 1.8E+02 0.0061 26.7 7.2 81 116-227 219-303 (396)
100 3cfy_A Putative LUXO repressor 24.4 1.3E+02 0.0044 22.2 5.1 41 140-184 5-45 (137)
101 2yqz_A Hypothetical protein TT 24.4 1.3E+02 0.0045 24.6 5.6 44 115-158 37-80 (263)
102 3fwz_A Inner membrane protein 23.7 1.4E+02 0.0047 23.1 5.3 38 120-157 9-48 (140)
103 1xp8_A RECA protein, recombina 23.6 96 0.0033 29.0 5.2 54 218-273 153-219 (366)
104 3bkw_A MLL3908 protein, S-aden 23.4 1.3E+02 0.0046 24.2 5.4 56 104-160 31-87 (243)
105 2kw5_A SLR1183 protein; struct 23.0 1.7E+02 0.0059 23.0 5.9 50 109-159 22-71 (202)
106 3ajd_A Putative methyltransfer 22.9 42 0.0014 29.2 2.4 35 132-166 197-237 (274)
107 3eul_A Possible nitrate/nitrit 22.8 95 0.0033 23.1 4.1 22 137-158 13-34 (152)
108 3rjr_A Transforming growth fac 22.6 22 0.00076 33.9 0.6 29 199-231 263-292 (363)
109 3t8y_A CHEB, chemotaxis respon 22.5 1.2E+02 0.0041 23.3 4.8 18 141-158 27-44 (164)
110 3hv2_A Response regulator/HD d 22.3 1.2E+02 0.004 22.8 4.5 41 139-180 14-54 (153)
111 3iqw_A Tail-anchored protein t 22.3 31 0.0011 31.8 1.5 13 215-227 136-148 (334)
112 3zq6_A Putative arsenical pump 22.1 32 0.0011 30.9 1.5 18 133-150 36-53 (324)
113 1vjo_A Alanine--glyoxylate ami 22.0 3.7E+02 0.013 23.2 8.3 105 75-184 41-156 (393)
114 2zr9_A Protein RECA, recombina 21.9 36 0.0012 31.4 1.9 63 218-282 140-225 (349)
115 3cio_A ETK, tyrosine-protein k 21.8 32 0.0011 30.8 1.4 14 216-229 212-225 (299)
116 3igf_A ALL4481 protein; two-do 21.7 32 0.0011 32.6 1.5 12 216-227 123-134 (374)
117 1ve3_A Hypothetical protein PH 21.5 2.7E+02 0.0092 22.1 6.8 52 107-158 27-79 (227)
118 2yxe_A Protein-L-isoaspartate 21.3 1.6E+02 0.0053 23.6 5.4 56 102-158 63-121 (215)
119 4a1x_C CP5-46-A peptide; hydro 21.3 44 0.0015 21.2 1.6 11 220-231 7-17 (26)
120 2xvm_A Tellurite resistance pr 21.2 1.8E+02 0.0061 22.6 5.6 50 108-158 24-73 (199)
121 3hh2_A Growth/differentiation 21.2 17 0.00059 29.0 -0.4 38 188-231 3-40 (109)
122 3i42_A Response regulator rece 21.0 86 0.0029 22.5 3.4 40 141-184 5-44 (127)
123 3kkz_A Uncharacterized protein 20.9 2.7E+02 0.0092 23.2 7.0 60 99-158 28-88 (267)
124 1m3s_A Hypothetical protein YC 20.7 2.6E+02 0.0087 22.3 6.6 80 99-185 21-104 (186)
125 3jte_A Response regulator rece 20.6 1E+02 0.0034 22.6 3.8 39 141-180 5-43 (143)
126 3bfv_A CAPA1, CAPB2, membrane 20.6 35 0.0012 30.1 1.4 49 102-150 63-122 (271)
127 3la6_A Tyrosine-protein kinase 20.5 35 0.0012 30.5 1.4 49 102-150 73-132 (286)
128 3lbf_A Protein-L-isoaspartate 20.1 2.1E+02 0.0073 22.7 5.9 55 103-158 64-118 (210)
No 1
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=97.02 E-value=0.008 Score=53.16 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=93.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCC--Cc-eeEEEEeecccc
Q 021017 98 YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP--EI-DVFDVQYTTKIR 174 (318)
Q Consensus 98 pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p--~l-eay~V~Y~T~~~ 174 (318)
+.++.++.+.+...+++ |-+.|-+|-|. |-+|.+...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .
T Consensus 14 ~~v~~~~~~~L~~~l~~---a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--g 87 (202)
T 3cvo_A 14 LTMPPAEAEALRMAYEE---AEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--T 87 (202)
T ss_dssp CCSCHHHHHHHHHHHHH---CSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--C
T ss_pred ccCCHHHHHHHHHHhhC---CCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--e
Confidence 36889999999886654 78999999996 6666665558999999999999998885422 11 123343332 1
Q ss_pred cHHHHHHHHhhhcCCCCcccccccccccccccCCCCcccc----cccccEEEEcCCCCCCCCCCCCcchhhhHHHHhhhc
Q 021017 175 ETKELIASAKEQIRNECKPVQNLLFSECKLGINDLPNHVY----EVDWDVILIDGPRGDGPDGPGRMSPIFTAGVLARSK 250 (318)
Q Consensus 175 ea~~LL~~~r~~~~~~C~p~~~~~~S~CkLAl~~LP~evY----e~~WDvImVDgP~Gy~peaPGRM~aIyTAavmAR~r 250 (318)
++.+. ..-..|+....+ -.+..++..+. +-..|+|+|||..+ ....+- .+-+-|
T Consensus 88 da~~~--------~~wg~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~ 145 (202)
T 3cvo_A 88 DIGPT--------GDWGHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSIT 145 (202)
T ss_dssp CCSSB--------CGGGCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCS
T ss_pred Cchhh--------hcccccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcC
Confidence 11100 001222221110 11111122221 14599999999753 222222 334444
Q ss_pred CCCCCcceEEEecC-CchHHHhhhhhhccccccccccCceeeEEeec
Q 021017 251 KGGNPKTHIFVHDY-YRHVERMCGDEFLCKENLVEFNDMLAHFVLEK 296 (318)
Q Consensus 251 ~~g~~~TdVfVHDv-dR~VE~~~s~eFLC~~nlv~~~grL~HF~I~~ 296 (318)
.+| =++++|| .|.-+..- .+|| .+++..||+..|++.+
T Consensus 146 ~GG----~Iv~DNv~~r~~y~~v-~~~~---~~~~~~~~~a~f~~~p 184 (202)
T 3cvo_A 146 RPV----TLLFDDYSQRRWQHQV-EEFL---GAPLMIGRLAAFQVEP 184 (202)
T ss_dssp SCE----EEEETTGGGCSSGGGG-HHHH---CCCEEETTEEEEEECC
T ss_pred CCe----EEEEeCCcCCcchHHH-HHHH---hHHhhcCceEEEEeCC
Confidence 443 4677885 56433222 3443 3567899999999944
No 2
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=93.92 E-value=0.23 Score=48.12 Aligned_cols=148 Identities=13% Similarity=0.080 Sum_probs=92.8
Q ss_pred CCCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhCCCcee--EE----EEeecccccHHHHHHHHhhhcC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELHPEIDV--FD----VQYTTKIRETKELIASAKEQIR 188 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~p~lea--y~----V~Y~T~~~ea~~LL~~~r~~~~ 188 (318)
..|-|.||.|+|--..+-..+.|. .+...+|-||.-|+-.++-+|.+-. ++ =+.+--+.||.+-|+.+.++
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~-- 281 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE-- 281 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH--
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhc--
Confidence 357799999999999998888875 4677899999999998888776522 21 12344467888888776532
Q ss_pred CCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCCCCCCCc-chhhhHHHHhhhc---CCCCCcceEEE---
Q 021017 189 NECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGPDGPGRM-SPIFTAGVLARSK---KGGNPKTHIFV--- 261 (318)
Q Consensus 189 ~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~peaPGRM-~aIyTAavmAR~r---~~g~~~TdVfV--- 261 (318)
.-++|||++|.+.+.....|-.. ...||--.+...+ +.| | |||
T Consensus 282 --------------------------~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~-G---Vlv~Q~ 331 (381)
T 3c6k_A 282 --------------------------GREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQD-G---KYFTQG 331 (381)
T ss_dssp --------------------------TCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEE-E---EEEEEE
T ss_pred --------------------------cCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCC-C---EEEEec
Confidence 12599999998876544455444 4678776543322 222 2 444
Q ss_pred -----ecCCchHHHhhhhhhcccc---cc--ccccCceeeEEee
Q 021017 262 -----HDYYRHVERMCGDEFLCKE---NL--VEFNDMLAHFVLE 295 (318)
Q Consensus 262 -----HDvdR~VE~~~s~eFLC~~---nl--v~~~grL~HF~I~ 295 (318)
++..+.+++.+.+.|---+ +. |-.-+..|=|.+.
T Consensus 332 ~s~~~~~~~~~i~~tl~~vF~~v~~~~~~~~VPSy~~~W~F~~a 375 (381)
T 3c6k_A 332 NCVNLTEALSLYEEQLGRLYCPVEFSKEIVCVPSYLELWVFYTV 375 (381)
T ss_dssp EETTCHHHHHHHHHHHTTSSSCEEEEEEEECCGGGSSCEEEEEE
T ss_pred CCCcchhHHHHHHHHHHHhCCcceEeeEEEEecCCCCceeeeEE
Confidence 5555677777776652111 11 2233447888774
No 3
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=93.49 E-value=0.29 Score=47.07 Aligned_cols=83 Identities=10% Similarity=0.143 Sum_probs=61.7
Q ss_pred CCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhCCCcee--EEE----EeecccccHHHHHHHHhhhcCC
Q 021017 117 SPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELHPEIDV--FDV----QYTTKIRETKELIASAKEQIRN 189 (318)
Q Consensus 117 aPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~p~lea--y~V----~Y~T~~~ea~~LL~~~r~~~~~ 189 (318)
.|-+.||.|.|--...-..+.|+ .+-+.+|=|+.-++.+++.+|.+.. ++- +.+-...||.+.|+...+.
T Consensus 188 ~pkrVL~IGgG~G~~arellk~~~~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~--- 264 (364)
T 2qfm_A 188 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKE--- 264 (364)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHH---
T ss_pred CCCEEEEEECChhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhcc---
Confidence 57899999999999888888876 4678999999999999999886532 210 2344567888888765321
Q ss_pred CCcccccccccccccccCCCCcccccccccEEEEcCCC
Q 021017 190 ECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPR 227 (318)
Q Consensus 190 ~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~ 227 (318)
+-.+|||++|.|.
T Consensus 265 -------------------------~~~fDvII~D~~d 277 (364)
T 2qfm_A 265 -------------------------GREFDYVINDLTA 277 (364)
T ss_dssp -------------------------TCCEEEEEEECCS
T ss_pred -------------------------CCCceEEEECCCC
Confidence 1258999999977
No 4
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=87.90 E-value=2 Score=39.95 Aligned_cols=50 Identities=10% Similarity=0.255 Sum_probs=40.6
Q ss_pred HHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhCC
Q 021017 110 DVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 110 ~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~p 160 (318)
-++.. ..|=|.||.|+|-...+-..+.|. -+...+|=||.-|+-.++-+|
T Consensus 77 ~l~~~-p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp 128 (294)
T 3o4f_A 77 PLLAH-GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp HHHHS-SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred HHhhC-CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCc
Confidence 34444 779999999999999998888884 377889999999988776555
No 5
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=86.56 E-value=1.2 Score=41.64 Aligned_cols=44 Identities=11% Similarity=0.009 Sum_probs=35.8
Q ss_pred CccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhCCC
Q 021017 118 PCNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 118 PCNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
|.+.|+.|.|--++.-..+. ++.+.+-+|=|+..++.+++.++.
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~ 135 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI 135 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc
Confidence 44999999998877655554 577888999999999999988764
No 6
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=84.96 E-value=2.8 Score=34.89 Aligned_cols=79 Identities=19% Similarity=0.254 Sum_probs=59.6
Q ss_pred CCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCc--hhhhHhh-hccCCcEEEecCChhHHHHh
Q 021017 79 LPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQ--ETLLWKA-LNHNGRTVFIDENRYYAAYF 155 (318)
Q Consensus 79 lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~--dsllW~a-LN~gGrTvFLeEd~~~i~~~ 155 (318)
=|.++++++-+|+.......+.+...-+.+..+++. ..|.++|=.|-|. -++.++. ++++|+-+-+|-++..++.+
T Consensus 21 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 99 (221)
T 3u81_A 21 DPQSVLEAIDTYCTQKEWAMNVGDAKGQIMDAVIRE-YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAIT 99 (221)
T ss_dssp CHHHHHHHHHHHHHHHTCGGGCCHHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHHhhhcCcCcccCHHHHHHHHHHHHh-cCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHH
Confidence 356899999999974444457777777777777775 7799999998755 4444443 35689999999999999888
Q ss_pred hhh
Q 021017 156 EEL 158 (318)
Q Consensus 156 ~~~ 158 (318)
+++
T Consensus 100 ~~~ 102 (221)
T 3u81_A 100 QQM 102 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 7
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=84.61 E-value=3.9 Score=36.32 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=38.6
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
..|-++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+.
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~ 124 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 124 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHH
Confidence 57889999999988877776666 46899999999999999887764
No 8
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=81.58 E-value=6.5 Score=35.94 Aligned_cols=46 Identities=15% Similarity=0.276 Sum_probs=37.8
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
..|-++|+.|.|.-...-..+.+ +++-+.+|=|+..++.+++..+.
T Consensus 107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~ 154 (314)
T 2b2c_A 107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPG 154 (314)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTT
T ss_pred CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 57899999999987766555554 57899999999999999988764
No 9
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=81.47 E-value=8 Score=34.22 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=37.8
Q ss_pred CCCccEEEecCCchhhhHhhhcc-C-CcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH-N-GRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~-g-GrTvFLeEd~~~i~~~~~~~p 160 (318)
..|.+.|+.|.|--.+.-..+.+ + .+-+.+|-|+.-++.+++..+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~ 120 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLP 120 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhH
Confidence 56899999999988887777766 3 688999999999999888654
No 10
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=77.74 E-value=6.9 Score=35.31 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=37.1
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++.+++..+
T Consensus 76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 122 (314)
T 1uir_A 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMP 122 (314)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 67899999999988777666665 5688999999999998887654
No 11
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=77.07 E-value=11 Score=31.70 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=55.7
Q ss_pred CHHHHHHHhhhhccCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhc-cCCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYASRSNDSY--HMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALN-HNGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tp--qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN-~gGrTvFLeEd~~~i~~ 154 (318)
+.+++.++-+++. .+..| +....+.+.+..+++. ..|-++|-+|-|.- ++.++... .+|+-+.+|-++.+++.
T Consensus 35 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~ 112 (232)
T 3cbg_A 35 DSFYLAQLRRETA-HLPGAPMQISPEQAQFLGLLISL-TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAI 112 (232)
T ss_dssp CCHHHHHHHHHTT-TSTTGGGSCCHHHHHHHHHHHHH-HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCccCcCHHHHHHHHHHHHh-cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 3467888889986 45556 5577777777776664 67889999987654 33344333 37899999999999988
Q ss_pred hhhh
Q 021017 155 FEEL 158 (318)
Q Consensus 155 ~~~~ 158 (318)
+++.
T Consensus 113 a~~~ 116 (232)
T 3cbg_A 113 AKKY 116 (232)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 12
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=76.26 E-value=10 Score=31.43 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=56.8
Q ss_pred CHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCc--hhhhHhhhccCCcEEEecCChhHHHHhhh
Q 021017 80 PTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQ--ETLLWKALNHNGRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~--dsllW~aLN~gGrTvFLeEd~~~i~~~~~ 157 (318)
+.++++.+-+|+. .+..+.........+...+.. +.+-++|.+|-|. -+..++...++++-+-+|-++..++.+++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~ 96 (233)
T 2gpy_A 19 RDQYIEQMEREAH-EQQVPIMDLLGMESLLHLLKM-AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHK 96 (233)
T ss_dssp CCHHHHHHHHHHH-HTTCCCCCHHHHHHHHHHHHH-HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCCcCHHHHHHHHHHHhc-cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHH
Confidence 4577888999986 455566666666777777765 6788999997765 44455555557889999999999888876
Q ss_pred h
Q 021017 158 L 158 (318)
Q Consensus 158 ~ 158 (318)
+
T Consensus 97 ~ 97 (233)
T 2gpy_A 97 H 97 (233)
T ss_dssp H
T ss_pred H
Confidence 5
No 13
>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*
Probab=75.89 E-value=13 Score=32.84 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=36.4
Q ss_pred CCCccEEEecCCchhhhHhhhcc-CCcEEEecCChhHHHHhhhhC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH-NGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~-gGrTvFLeEd~~~i~~~~~~~ 159 (318)
..|.+.|+.|.|.-.+.-..+.+ .++-+.+|=|+..++.+++..
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~ 118 (281)
T 1mjf_A 74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI 118 (281)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT
T ss_pred CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 67899999999988776666665 458899999999999888765
No 14
>3adn_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, polyamine biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} PDB: 3o4f_A
Probab=75.84 E-value=9 Score=34.62 Aligned_cols=45 Identities=11% Similarity=0.232 Sum_probs=36.2
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..|-+.|+.|.|-..+.-..+.+ .++-+.+|=|+.-++.+++..|
T Consensus 82 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~V~~VDid~~vi~~ar~~~~ 128 (294)
T 3adn_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLP 128 (294)
T ss_dssp TTCCEEEEESCTTCHHHHHHHTCTTCCEEEEECSCTTHHHHHHHHCH
T ss_pred CCCCEEEEEeCChhHHHHHHHhCCCCCEEEEEECCHHHHHHHHHhhh
Confidence 67999999999988877666666 3567889999999998887644
No 15
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=75.46 E-value=3.7 Score=37.15 Aligned_cols=45 Identities=16% Similarity=0.226 Sum_probs=36.5
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..|-++|+.|.|.-.+.-..+.+ .++-+.+|-|+..++.+++..+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~ 140 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLP 140 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 56889999999887766655555 3789999999999999888754
No 16
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=73.91 E-value=10 Score=34.56 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=38.7
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
..|.++|+.|.|...+.-..+.+ +++-+.+|=|+.-++.+++..+.
T Consensus 115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~ 162 (321)
T 2pt6_A 115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKN 162 (321)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTT
T ss_pred CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh
Confidence 67899999999988877766665 56888999999999999887665
No 17
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=73.72 E-value=14 Score=30.92 Aligned_cols=78 Identities=9% Similarity=0.079 Sum_probs=55.7
Q ss_pred CHHHHHHHhhhhccCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEecCCc--hhhhHhhhcc-CCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYASRSNDSY--HMTHSELKRISDVIRKCSSPCNFLVFGLTQ--ETLLWKALNH-NGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tp--qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~--dsllW~aLN~-gGrTvFLeEd~~~i~~ 154 (318)
+.++++.+-.++. .+..| +........+...+.. ..+.++|..|-|. .+..++...+ +++-+-+|-|+..++.
T Consensus 23 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~-~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~ 100 (239)
T 2hnk_A 23 EPDSFLKLRKETG-TLAQANMQISPEEGQFLNILTKI-SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNV 100 (239)
T ss_dssp CCHHHHHHHHHHH-TC---CCSCCHHHHHHHHHHHHH-HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCcccccCHHHHHHHHHHHHh-hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 3467788888986 55556 5567777777777764 7789999997754 4555555444 7899999999999998
Q ss_pred hhhhC
Q 021017 155 FEELH 159 (318)
Q Consensus 155 ~~~~~ 159 (318)
+++..
T Consensus 101 a~~~~ 105 (239)
T 2hnk_A 101 ARKYW 105 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88663
No 18
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=71.85 E-value=18 Score=30.68 Aligned_cols=77 Identities=9% Similarity=-0.038 Sum_probs=57.6
Q ss_pred CHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCc---cEEEecCCchh-hhHhh--hccCCcEEEecCChhHHH
Q 021017 80 PTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPC---NFLVFGLTQET-LLWKA--LNHNGRTVFIDENRYYAA 153 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPC---NfLVFGLg~ds-llW~a--LN~gGrTvFLeEd~~~i~ 153 (318)
+.++++.+-.||. .+..|.++...-..+..+++. ..|- ++|=.|-|.-. .+|-+ +.++|+-+-+|-|+.+++
T Consensus 18 ~~~~l~~~~~~a~-~~~~p~i~~~~~~~l~~l~~~-~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~ 95 (221)
T 3dr5_A 18 TDAAVARAREDAA-EFGLPAPDEMTGQLLTTLAAT-TNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQR 95 (221)
T ss_dssp CCHHHHHHHHHHH-HTTCCCCCHHHHHHHHHHHHH-SCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHH
T ss_pred CCHHHHHHHHHHH-HcCCCCCCHHHHHHHHHHHHh-hCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence 5678899999997 455677777776666666665 6666 89999887653 33333 456899999999999998
Q ss_pred Hhhhh
Q 021017 154 YFEEL 158 (318)
Q Consensus 154 ~~~~~ 158 (318)
.++++
T Consensus 96 ~a~~~ 100 (221)
T 3dr5_A 96 QAKAL 100 (221)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88765
No 19
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=71.75 E-value=17 Score=29.58 Aligned_cols=76 Identities=14% Similarity=0.107 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHHhhh
Q 021017 81 TTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~~~~ 157 (318)
.++++.+-.|+. .+..|.........+..+++. ..|-++|-.|-|.- +..++...+ +|+-+-+|-|+..++.+++
T Consensus 22 ~~~~~~~~~~~~-~~~~p~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~ 99 (210)
T 3c3p_A 22 DPVVAAMEQIAR-ERNIPIVDRQTGRLLYLLARI-KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARR 99 (210)
T ss_dssp CHHHHHHHHHHH-HTTCCCCCHHHHHHHHHHHHH-HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCCcCHHHHHHHHHHHHh-hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHH
Confidence 567888899986 455566666666666666654 67899999987654 344444434 7888899999999888775
Q ss_pred h
Q 021017 158 L 158 (318)
Q Consensus 158 ~ 158 (318)
+
T Consensus 100 ~ 100 (210)
T 3c3p_A 100 M 100 (210)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=69.28 E-value=26 Score=28.66 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=55.9
Q ss_pred CHHHHHHHhhhhccC-CCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHHh
Q 021017 80 PTTVINTLLLYASRS-NDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAYF 155 (318)
Q Consensus 80 p~~v~~ALvhYAt~s-n~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~~ 155 (318)
+.++++++-.++... +..++.+..+...+..+++. ..|.++|-+|-|.- ++.++...+ +++-+-+|-|+..++.+
T Consensus 32 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 110 (229)
T 2avd_A 32 EHPALRSLRLLTLEQPQGDSMMTCEQAQLLANLARL-IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELG 110 (229)
T ss_dssp CCHHHHHHHHHHHTSTTGGGSCCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHh-cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 346788888888632 23357777777777776664 78999999987654 444444333 78899999999999888
Q ss_pred hhh
Q 021017 156 EEL 158 (318)
Q Consensus 156 ~~~ 158 (318)
++.
T Consensus 111 ~~~ 113 (229)
T 2avd_A 111 RPL 113 (229)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 21
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=69.01 E-value=29 Score=29.44 Aligned_cols=78 Identities=14% Similarity=0.017 Sum_probs=54.8
Q ss_pred CHHHHHHHhhhhccCCCC--cCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYASRSNDS--YHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~t--pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~ 154 (318)
+.+++.++-.|+. .+.- ++.+..+-..+..+++. ..|-++|-.|-|.- ++.++...+ +|+-+-+|-|+.+++.
T Consensus 33 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~ 110 (237)
T 3c3y_A 33 EAGFLKELREANE-SHPDSYMSTSPLAGQLMSFVLKL-VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEI 110 (237)
T ss_dssp SCHHHHHHHHHHT-TSTTGGGSCCHHHHHHHHHHHHH-TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHH-hcCCCCCCcCHHHHHHHHHHHHh-hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 4567888889986 4433 34466666666666665 77999999987654 333443333 8999999999999998
Q ss_pred hhhhC
Q 021017 155 FEELH 159 (318)
Q Consensus 155 ~~~~~ 159 (318)
+++..
T Consensus 111 a~~~~ 115 (237)
T 3c3y_A 111 GLPFI 115 (237)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 22
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=66.75 E-value=22 Score=30.58 Aligned_cols=78 Identities=12% Similarity=0.034 Sum_probs=54.2
Q ss_pred CHHHHHHHhhhhccCCCC--cCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYASRSNDS--YHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt~sn~t--pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~ 154 (318)
+.++++++-+||. .+.- ++.+...-..+..+++. ..|-++|-.|-|.- ++.++...+ +|+-+-+|-|+.+++.
T Consensus 42 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~-~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~ 119 (247)
T 1sui_A 42 EHEAMKELREVTA-KHPWNIMTTSADEGQFLSMLLKL-INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYEL 119 (247)
T ss_dssp CTTHHHHHHHHHH-TSTTGGGSCCHHHHHHHHHHHHH-TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHH
T ss_pred CCHHHHHHHHHHH-hcCCCCCCcCHHHHHHHHHHHHh-hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHH
Confidence 3457888889986 4443 34456555666666664 77899999988664 333333333 8999999999999998
Q ss_pred hhhhC
Q 021017 155 FEELH 159 (318)
Q Consensus 155 ~~~~~ 159 (318)
+++..
T Consensus 120 a~~~~ 124 (247)
T 1sui_A 120 GLPVI 124 (247)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 23
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=64.94 E-value=18 Score=27.99 Aligned_cols=60 Identities=5% Similarity=-0.010 Sum_probs=41.6
Q ss_pred cCCCHHHHHHH-HHHHHhcCCCccEEEecCCchhhhHh--hhccCCcEEEecCChhHHHHhhhh
Q 021017 98 YHMTHSELKRI-SDVIRKCSSPCNFLVFGLTQETLLWK--ALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 98 pqqt~~Ei~~~-~~vL~~~raPCNfLVFGLg~dsllW~--aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.++|..|+... .+.+. .+.+..+|.+|-|.-.+... ...++++-+-+|=|+..++.++++
T Consensus 6 g~~t~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~ 68 (178)
T 3hm2_A 6 GQLTKQHVRALAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSN 68 (178)
T ss_dssp CCSHHHHHHHHHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH
Confidence 47888887743 33333 35667999998877655543 333477888889999888887765
No 24
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=63.97 E-value=12 Score=31.56 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=51.8
Q ss_pred HHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 82 TVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 82 ~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
++++++..|+. .+..|.+.......+...++. ..|.++|=.|-|.- +..++...++++-+-+|=|+..++.++++
T Consensus 38 ~~l~~l~~~~~-~~~~~~~~~~~~~~l~~~~~~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~ 114 (232)
T 3ntv_A 38 SSIEVLREFAE-VNEVPIVDRLTLDLIKQLIRM-NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQN 114 (232)
T ss_dssp CGGGGHHHHHH-HTTCCCCCHHHHHHHHHHHHH-HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCCCcCHHHHHHHHHHHhh-cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 34556777775 344466666666666666664 67899999977554 44444444688889999999988877654
No 25
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=63.26 E-value=26 Score=28.64 Aligned_cols=76 Identities=13% Similarity=0.105 Sum_probs=52.2
Q ss_pred HHHHHHHhhhhccCCCCcCC--CHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHHh
Q 021017 81 TTVINTLLLYASRSNDSYHM--THSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAYF 155 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~~ 155 (318)
.++++.+..++. .+..|.+ +...-..+..++.. ..|.++|-.|-|.- +..++...+ +|+-+-+|-++..++.+
T Consensus 22 ~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a 99 (223)
T 3duw_A 22 DSTLEEVLQVNA-AANLPAHDVSPTQGKFLQLLVQI-QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIA 99 (223)
T ss_dssp CHHHHHHHHHHH-HTTCCSCSCCHHHHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHh-hCCCCCcccCHHHHHHHHHHHHh-hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 356778888886 4555654 35555555555554 77999999987654 444444444 78888999999999888
Q ss_pred hhh
Q 021017 156 EEL 158 (318)
Q Consensus 156 ~~~ 158 (318)
+++
T Consensus 100 ~~~ 102 (223)
T 3duw_A 100 RSN 102 (223)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 26
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Probab=62.83 E-value=26 Score=27.01 Aligned_cols=64 Identities=14% Similarity=-0.054 Sum_probs=45.2
Q ss_pred CCCCcCCCHHHHHH-HHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 94 SNDSYHMTHSELKR-ISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 94 sn~tpqqt~~Ei~~-~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.+..|+.+..++.. +.+.+. .+.+-++|.+|-|...+.......+++-+-+|-|+..++.++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~ 74 (192)
T 1l3i_A 10 NPSVPGPTAMEVRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMN 74 (192)
T ss_dssp CTTSCCCCCHHHHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHH
T ss_pred CCCCCCCChHHHHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHH
Confidence 34445455555544 344454 46778999999988777766666678888899999998887764
No 27
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=60.65 E-value=11 Score=34.00 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=34.2
Q ss_pred HHHHHHHhcCCC--ccEEEe--cCCchhhhHhhhccCCcEEEecCChhHHHHhhh
Q 021017 107 RISDVIRKCSSP--CNFLVF--GLTQETLLWKALNHNGRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 107 ~~~~vL~~~raP--CNfLVF--GLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~ 157 (318)
.+.+.+. .+.. ..+|=. |+|.|++..++. |++-+++|-++..++-++.
T Consensus 77 ~l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~ 128 (258)
T 2oyr_A 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDD 128 (258)
T ss_dssp HHHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHH
T ss_pred HHHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence 3444554 2444 566654 899999988876 8899999999987665543
No 28
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=56.14 E-value=35 Score=27.76 Aligned_cols=79 Identities=8% Similarity=0.048 Sum_probs=53.1
Q ss_pred CHHHHHHHhhhhc-cCCCC-cCCCHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHH
Q 021017 80 PTTVINTLLLYAS-RSNDS-YHMTHSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAY 154 (318)
Q Consensus 80 p~~v~~ALvhYAt-~sn~t-pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~ 154 (318)
+..+++.+-+++. ..... .+.+...-..+..++.. ..|.++|-.|-|.- ++.++...+ +++-+-+|-++..++.
T Consensus 26 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~ 104 (225)
T 3tr6_A 26 EPPLLAELREETTRSFSTYAMQTAPEQAQLLALLVKL-MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTAL 104 (225)
T ss_dssp CCHHHHHHHHHHHHHCTTGGGSCCHHHHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHH
T ss_pred CCHHHHHHHHHHHhhCCCCccccCHHHHHHHHHHHHh-hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHH
Confidence 3456777878774 22222 35566666666666664 67899999977554 444444333 7899999999999988
Q ss_pred hhhhC
Q 021017 155 FEELH 159 (318)
Q Consensus 155 ~~~~~ 159 (318)
++++.
T Consensus 105 a~~~~ 109 (225)
T 3tr6_A 105 AKEYW 109 (225)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 29
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=55.58 E-value=46 Score=28.32 Aligned_cols=76 Identities=12% Similarity=0.081 Sum_probs=51.5
Q ss_pred HHHHHHHhhhhccCCCCcCC--CHHHHHHHHHHHHhcCCCccEEEecCCch--hhhHhhhcc-CCcEEEecCChhHHHHh
Q 021017 81 TTVINTLLLYASRSNDSYHM--THSELKRISDVIRKCSSPCNFLVFGLTQE--TLLWKALNH-NGRTVFIDENRYYAAYF 155 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tpqq--t~~Ei~~~~~vL~~~raPCNfLVFGLg~d--sllW~aLN~-gGrTvFLeEd~~~i~~~ 155 (318)
..+++.+..++- .+..|.+ +...-..+..++.. ..|.++|-.|-|.- ++.++...+ +|+-+-+|-|+..++.+
T Consensus 27 ~~~l~~~~~~~~-~~~~p~~~~~~~~~~~l~~l~~~-~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a 104 (248)
T 3tfw_A 27 DPVLDRVLENNH-RAGLPAHDVAANQGQFLALLVRL-TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVA 104 (248)
T ss_dssp CHHHHHHHHHHH-HTTCBSCCCCHHHHHHHHHHHHH-HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHH
T ss_pred CHHHHHHHHHHH-HcCCCccccCHHHHHHHHHHHhh-cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 356778888886 4455654 35555555555443 67999999987654 344444334 78899999999999888
Q ss_pred hhh
Q 021017 156 EEL 158 (318)
Q Consensus 156 ~~~ 158 (318)
+++
T Consensus 105 ~~~ 107 (248)
T 3tfw_A 105 REN 107 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 30
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=54.49 E-value=82 Score=25.22 Aligned_cols=84 Identities=17% Similarity=0.216 Sum_probs=58.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHh----hhccCCcEE-Eec-CChhHHHHhhhhCCCceeEEEEeecc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWK----ALNHNGRTV-FID-ENRYYAAYFEELHPEIDVFDVQYTTK 172 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~----aLN~gGrTv-FLe-Ed~~~i~~~~~~~p~leay~V~Y~T~ 172 (318)
+...+++..+.+.|.+++ ++.|||.|.....=. .|+.-|..+ ++. +...+........|+--.--+.|.-.
T Consensus 23 ~l~~~~l~~~~~~i~~a~---~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~ 99 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRAD---HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRY 99 (187)
T ss_dssp TCCHHHHHHHHHHHHHCS---EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSC
T ss_pred hCCHHHHHHHHHHHHhCC---EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCC
Confidence 567889999999998843 999999998665332 334445555 455 24455555555566666666777777
Q ss_pred cccHHHHHHHHhh
Q 021017 173 IRETKELIASAKE 185 (318)
Q Consensus 173 ~~ea~~LL~~~r~ 185 (318)
-.+.-++++.+|+
T Consensus 100 t~~~~~~~~~ak~ 112 (187)
T 3sho_A 100 LRDTVAALAGAAE 112 (187)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 7788888888885
No 31
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41
Probab=53.23 E-value=19 Score=30.17 Aligned_cols=59 Identities=10% Similarity=0.015 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
+.+..++..+.+.+.. +.+-++|-+|-|...+.......+++-+-+|-++..++.++++
T Consensus 20 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 78 (260)
T 1vl5_A 20 HAKGSDLAKLMQIAAL-KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAF 78 (260)
T ss_dssp ---CCCHHHHHHHHTC-CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHhCC-CCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHH
Confidence 5566677778888875 7889999999998887777777788999999999999887754
No 32
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=50.07 E-value=51 Score=25.41 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=37.3
Q ss_pred CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
+.+.++|-+|-|...........|.+.+-+|-++..++.++++.++
T Consensus 45 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~ 90 (195)
T 3cgg_A 45 PRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPE 90 (195)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCC
Confidence 4678999999888777666666688889999999999998887654
No 33
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=49.70 E-value=29 Score=28.03 Aligned_cols=60 Identities=17% Similarity=0.212 Sum_probs=42.8
Q ss_pred cCCCHHHH-HHHHHHHHhcCCCccEEEecCCchh--hhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 98 YHMTHSEL-KRISDVIRKCSSPCNFLVFGLTQET--LLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 98 pqqt~~Ei-~~~~~vL~~~raPCNfLVFGLg~ds--llW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.+++..|+ ..+.+.+. .+...++|-+|-|.-. ..++...++++-+-+|-|+..++.++++
T Consensus 21 g~~~~~~i~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~ 83 (204)
T 3e05_A 21 KLITKQEVRAVTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83 (204)
T ss_dssp TTSCCHHHHHHHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHH
T ss_pred CcCChHHHHHHHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHH
Confidence 45588888 44555554 3677899999876554 4455555558888899999998887764
No 34
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=48.54 E-value=46 Score=26.52 Aligned_cols=57 Identities=9% Similarity=-0.035 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCC
Q 021017 103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
.+...+...+.. . +-++|-+|-|...........|.+-+-+|-++..++.++++.++
T Consensus 29 ~~~~~l~~~~~~-~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 85 (203)
T 3h2b_A 29 PDRVLIEPWATG-V-DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPS 85 (203)
T ss_dssp TTHHHHHHHHHH-C-CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcc-C-CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCC
Confidence 455667777765 3 88999999988777666666688889999999999988887554
No 35
>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A
Probab=48.25 E-value=35 Score=30.15 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=38.3
Q ss_pred CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
..|-+.|+.|.|--.+.-..+.++++-+.+|-|+..++.+++..|.
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~ 116 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH 116 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh
Confidence 5688999999998888776676667888999999999998887654
No 36
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}
Probab=48.22 E-value=19 Score=27.98 Aligned_cols=52 Identities=13% Similarity=-0.024 Sum_probs=38.6
Q ss_pred HHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCC
Q 021017 108 ISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 108 ~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p 160 (318)
+.+.+.- +.+.++|-+|-|...........+++-+-+|-++..++.++++.+
T Consensus 9 ~~~~~~~-~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 60 (170)
T 3i9f_A 9 YLPNIFE-GKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFD 60 (170)
T ss_dssp THHHHHS-SCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCT
T ss_pred HHHhcCc-CCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCC
Confidence 4444543 567799999988877777666666788888889988888887733
No 37
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=48.00 E-value=32 Score=32.09 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=24.5
Q ss_pred cccEEEEcCCCCCCC--CCCCCcchh-----------hhHHHHhhhcCCCCCcceEEEecCCchHHHhh
Q 021017 217 DWDVILIDGPRGDGP--DGPGRMSPI-----------FTAGVLARSKKGGNPKTHIFVHDYYRHVERMC 272 (318)
Q Consensus 217 ~WDvImVDgP~Gy~p--eaPGRM~aI-----------yTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~ 272 (318)
.-|+|+||.+....+ +-.|+|+.. +.-.+..-.++. +.|=|++..+.+.++..|
T Consensus 141 ~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~--~~~VI~~nq~~~~~~~~f 207 (356)
T 1u94_A 141 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS--NTLLIFINQIRMKIGVMF 207 (356)
T ss_dssp CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHH--TCEEEEEEC---------
T ss_pred CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHh--CCEEEEEeccccccCccc
Confidence 458999999998875 223554321 111111112222 368899999999999876
No 38
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Probab=47.80 E-value=81 Score=26.32 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhc-CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCc
Q 021017 102 HSELKRISDVIRKC-SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~-raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~l 162 (318)
..+...+.+.|.+. ..+.++|=+|-|...+.......|.+.+-+|=++..++.++++.+++
T Consensus 34 ~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~ 95 (263)
T 3pfg_A 34 HREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDA 95 (263)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCC
Confidence 34555666666542 34589999999988888777777888899999999999988876543
No 39
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=45.37 E-value=17 Score=33.86 Aligned_cols=34 Identities=12% Similarity=0.240 Sum_probs=22.4
Q ss_pred CCccEEEe----cCCchh----hhHhhh--ccCCcEEEecCChh
Q 021017 117 SPCNFLVF----GLTQET----LLWKAL--NHNGRTVFIDENRY 150 (318)
Q Consensus 117 aPCNfLVF----GLg~ds----llW~aL--N~gGrTvFLeEd~~ 150 (318)
.+..++|| |-|.-+ +.|..- ..|-|++.+|-|+.
T Consensus 16 ~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 16 DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 45678888 344433 333333 67889999999975
No 40
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Probab=43.78 E-value=79 Score=25.08 Aligned_cols=53 Identities=9% Similarity=-0.045 Sum_probs=41.9
Q ss_pred HHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhh
Q 021017 105 LKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 105 i~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~ 157 (318)
+..+.+.|.+.+.+-++|-+|-|...+.-.....|.+-+-+|-++..++.+++
T Consensus 34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~ 86 (218)
T 3ou2_A 34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR 86 (218)
T ss_dssp HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh
Confidence 55677777765666899999988877766666668888899999998888876
No 41
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A
Probab=43.58 E-value=1.2e+02 Score=24.38 Aligned_cols=57 Identities=9% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCC
Q 021017 104 ELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 104 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p 160 (318)
....+.+.|.+...+.++|=+|-|...+.-.....|.+.+-+|-++..++.++++.+
T Consensus 29 ~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~ 85 (250)
T 2p7i_A 29 MHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK 85 (250)
T ss_dssp HHHHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhh
Confidence 445667777765678899999988877766666677788999999999998887765
No 42
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=43.42 E-value=82 Score=25.28 Aligned_cols=57 Identities=23% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCC
Q 021017 103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..+..+.+.+.. +.+.++|-+|-|...+.-.....|.+.+-+|-++..++.++++.+
T Consensus 32 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~ 88 (220)
T 3hnr_A 32 AHYEDILEDVVN-KSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP 88 (220)
T ss_dssp TTHHHHHHHHHH-TCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhc-cCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC
Confidence 344555566655 678899999988877776666668888999999999888887655
No 43
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}
Probab=42.27 E-value=1.1e+02 Score=23.26 Aligned_cols=60 Identities=5% Similarity=-0.208 Sum_probs=43.5
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 98 YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 98 pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
+..+..-...+.+.+.. +.+.++|=+|-|.-.+......++++-+-+|-|+..++.++++
T Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 76 (183)
T 2yxd_A 17 PITKEEIRAVSIGKLNL-NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQN 76 (183)
T ss_dssp CCCCHHHHHHHHHHHCC-CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHcCC-CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 34444444556666653 6677999998888776666566778888899999999888765
No 44
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}
Probab=42.08 E-value=82 Score=25.46 Aligned_cols=60 Identities=17% Similarity=0.140 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHhc-CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCc
Q 021017 103 SELKRISDVIRKC-SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 103 ~Ei~~~~~vL~~~-raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~l 162 (318)
.+...+.+.|.+. ..+.++|=+|-|...........+.+-+-+|-++..++.++++.+++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~ 85 (239)
T 3bxo_A 25 AEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDA 85 (239)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCC
Confidence 4555566666542 45678999988877666555555668888999999999888776543
No 45
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=41.52 E-value=12 Score=30.70 Aligned_cols=17 Identities=12% Similarity=0.030 Sum_probs=14.1
Q ss_pred cccccEEEEcCCCCCCC
Q 021017 215 EVDWDVILIDGPRGDGP 231 (318)
Q Consensus 215 e~~WDvImVDgP~Gy~p 231 (318)
.-+.|+|+||.|.|...
T Consensus 129 ~~~yD~viiD~pp~~~~ 145 (254)
T 3kjh_A 129 LDKKEAVVMDMGAGIEH 145 (254)
T ss_dssp HTCCSEEEEEECTTCTT
T ss_pred cCCCCEEEEeCCCcccH
Confidence 34789999999998865
No 46
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=41.07 E-value=1.2e+02 Score=24.05 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHHHHHhc--CCCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhC
Q 021017 106 KRISDVIRKC--SSPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 106 ~~~~~vL~~~--raPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~ 159 (318)
..+.+.|... ..+.++|=+|-|.-.+.-..+..| ++.+-+|-|+..++.++++.
T Consensus 31 ~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~ 87 (189)
T 3p9n_A 31 ESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNI 87 (189)
T ss_dssp HHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHH
Confidence 4455555432 356789988887766554344444 46888999999998887663
No 47
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=40.68 E-value=11 Score=30.99 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=12.6
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-++|+|+||+|.|..
T Consensus 110 ~~yD~viiD~~~~~~ 124 (237)
T 1g3q_A 110 DKFDFILIDCPAGLQ 124 (237)
T ss_dssp GGCSEEEEECCSSSS
T ss_pred hcCCEEEEECCCCcC
Confidence 468999999998865
No 48
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=40.66 E-value=11 Score=30.84 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.5
Q ss_pred cccEEEEcCCCCCC
Q 021017 217 DWDVILIDGPRGDG 230 (318)
Q Consensus 217 ~WDvImVDgP~Gy~ 230 (318)
+.|+|+||+|.|..
T Consensus 108 ~yD~viID~p~~l~ 121 (224)
T 1byi_A 108 QADWVLVEGAGGWF 121 (224)
T ss_dssp TCSEEEEECSSSTT
T ss_pred hCCEEEEEcCCccc
Confidence 67999999999876
No 49
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*
Probab=39.88 E-value=75 Score=26.37 Aligned_cols=60 Identities=15% Similarity=0.004 Sum_probs=45.7
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhh---ccCCcEEEecCChhHHHHhhhh
Q 021017 98 YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKAL---NHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 98 pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aL---N~gGrTvFLeEd~~~i~~~~~~ 158 (318)
..+..+++..+...+.- +.+.++|-+|-|.-.+.-... +++++-+-+|-++..++.++++
T Consensus 75 ~~~~~~~~~~i~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 137 (255)
T 3mb5_A 75 QIVHPKDAALIVAYAGI-SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWEN 137 (255)
T ss_dssp CCCCHHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred ccccHhHHHHHHHhhCC-CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHH
Confidence 34678888888888874 778899999887765544333 4578888899999888877654
No 50
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}
Probab=39.59 E-value=1.2e+02 Score=25.03 Aligned_cols=48 Identities=13% Similarity=-0.035 Sum_probs=40.5
Q ss_pred CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCCce
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPEID 163 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~le 163 (318)
+.+.++|-+|-|.-.........|.+.+-+|-++..++.++++.|+++
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~ 94 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHAD 94 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSE
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCce
Confidence 467899999999888888888888899999999999999988865443
No 51
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=38.58 E-value=1.1e+02 Score=24.18 Aligned_cols=54 Identities=19% Similarity=0.083 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 104 ELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 104 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
....+.+.+.. +.|.++|=+|-|.-.........|.+-+-+|-++..++.++++
T Consensus 40 ~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 93 (227)
T 3e8s_A 40 TDQAILLAILG-RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA 93 (227)
T ss_dssp HHHHHHHHHHH-TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT
T ss_pred ccHHHHHHhhc-CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh
Confidence 33455666665 6789999999988887777777788888999999999988877
No 52
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=38.06 E-value=13 Score=31.82 Aligned_cols=16 Identities=44% Similarity=0.661 Sum_probs=13.1
Q ss_pred ccccEEEEcCCCCCCC
Q 021017 216 VDWDVILIDGPRGDGP 231 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~p 231 (318)
-++|+|+||+|.|...
T Consensus 127 ~~yD~ViID~pp~~~~ 142 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGD 142 (262)
T ss_dssp CSCSEEEEECCSSSSS
T ss_pred cCCCEEEEECcCCCch
Confidence 4689999999998643
No 53
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}
Probab=37.01 E-value=68 Score=26.29 Aligned_cols=59 Identities=12% Similarity=0.015 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.....++..+.+.+.- +..-++|.+|-|.-.+.-.....+++-+.+|-++..++.++++
T Consensus 74 ~~~~~~~~~~~~~~~~-~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~ 132 (248)
T 2yvl_A 74 IIYPKDSFYIALKLNL-NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKN 132 (248)
T ss_dssp CCCHHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHH
T ss_pred cccchhHHHHHHhcCC-CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 3456777777776653 6678999998876554444444478888888899888877754
No 54
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=36.90 E-value=1e+02 Score=25.71 Aligned_cols=55 Identities=13% Similarity=0.047 Sum_probs=37.7
Q ss_pred HHHHHHHhc--CCCccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhCCC
Q 021017 107 RISDVIRKC--SSPCNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 107 ~~~~vL~~~--raPCNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
.+.+.+.+. ..+-++|.+|-|...+.-.... +|++-+-+|-++..++.++++.++
T Consensus 73 ~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 131 (269)
T 1p91_A 73 AIVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQ 131 (269)
T ss_dssp HHHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCC
Confidence 344444432 4577999998877554433333 477888899999999988887654
No 55
>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}
Probab=36.58 E-value=36 Score=30.30 Aligned_cols=71 Identities=13% Similarity=0.127 Sum_probs=39.4
Q ss_pred HHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhcCCCccEEEecCCc--hhhh-Hhhh------ccCC-----cEEEec
Q 021017 81 TTVINTLLLYASRSNDSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQ--ETLL-WKAL------NHNG-----RTVFID 146 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~--dsll-W~aL------N~gG-----rTvFLe 146 (318)
..+.+++--|+- .|..|+ +...+-+.+.++|-.|+|- ..+. |.+. ++.+ +-+=+|
T Consensus 35 ~~l~E~~~vF~~-~~~lp~----------r~~~~~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE 103 (257)
T 2qy6_A 35 NGLEETRYVFLG-GNQLEA----------RFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFE 103 (257)
T ss_dssp THHHHHHHHHHH-HTTHHH----------HGGGCSSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEE
T ss_pred CHHHHHHHHHHh-ccchHH----------HHHhcCCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEE
Confidence 456777766765 343321 1111125677888866654 4444 5555 7754 223367
Q ss_pred CCh---hHHHHhhhhCCCc
Q 021017 147 ENR---YYAAYFEELHPEI 162 (318)
Q Consensus 147 Ed~---~~i~~~~~~~p~l 162 (318)
-+| +-+.++.+..|++
T Consensus 104 ~~p~~~~~l~~a~~~~p~l 122 (257)
T 2qy6_A 104 KFPLTRADLALAHQHWPEL 122 (257)
T ss_dssp SSCCCHHHHHHHHTTCGGG
T ss_pred CCcCCHHHHHHHHhcChhH
Confidence 776 6667776666665
No 56
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4
Probab=34.77 E-value=85 Score=24.10 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.....+.+.+.. +.+.++|-+|-|...+.-.....+++.+-+|-++..++.++++
T Consensus 39 ~~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~ 93 (194)
T 1dus_A 39 KGTKILVENVVV-DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKEN 93 (194)
T ss_dssp HHHHHHHHHCCC-CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHccc-CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHH
Confidence 566666777754 6677999998887766555555578888899999888877654
No 57
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A
Probab=34.23 E-value=1.1e+02 Score=24.66 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=46.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhC
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~ 159 (318)
+.....+..+.+.+.. ..+.++|=+|-|.-.+.......+ .+.+-+|-|+..++.++++.
T Consensus 12 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (217)
T 3jwh_A 12 SLNQQRMNGVVAALKQ-SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERL 73 (217)
T ss_dssp CHHHHHHHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHH
Confidence 5667778888888886 778899999888776665555444 57888899999988888763
No 58
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A
Probab=34.17 E-value=1.2e+02 Score=24.31 Aligned_cols=60 Identities=12% Similarity=0.136 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC--CcEEEecCChhHHHHhhhhC
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN--GRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g--GrTvFLeEd~~~i~~~~~~~ 159 (318)
++...-+..+.+.|.. ..+.++|=+|-|.-.+.......+ .+.+-+|-|+..++.++++.
T Consensus 12 ~~~~~~~~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 73 (219)
T 3jwg_A 12 NLNQQRLGTVVAVLKS-VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRL 73 (219)
T ss_dssp CHHHHHHHHHHHHHHH-TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHhh-cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHH
Confidence 4556667788888886 778999999888776665555544 58888999999998888764
No 59
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}
Probab=34.14 E-value=64 Score=26.25 Aligned_cols=60 Identities=7% Similarity=-0.087 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCccEEEecCCchhhhHhh--hccCCcEEEecCChhHHHHhhhhCCC
Q 021017 102 HSELKRISDVIRKCSSPCNFLVFGLTQETLLWKA--LNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~a--LN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
...+..+.+.+...+.+.++|=+|-|........ ..++++-+-+|-++..++.++++.+.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~ 90 (234)
T 3dtn_A 29 DDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG 90 (234)
T ss_dssp HHHHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc
Confidence 3444666666664467889999988766555444 44478888999999999888877643
No 60
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=34.05 E-value=60 Score=23.81 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred cEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHH
Q 021017 141 RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL 180 (318)
+-+.+|+|+.....++...-.. |.|..-....+|-+++
T Consensus 5 ~iLivdd~~~~~~~l~~~l~~~--~~v~~~~~~~~a~~~~ 42 (140)
T 3n53_A 5 KILIIDQQDFSRIELKNFLDSE--YLVIESKNEKEALEQI 42 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHTTT--SEEEEESSHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHhc--ceEEEeCCHHHHHHHH
Confidence 4577888888777666554443 6666444444444443
No 61
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=34.04 E-value=16 Score=29.19 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=11.8
Q ss_pred cccEEEEcCCCCCC
Q 021017 217 DWDVILIDGPRGDG 230 (318)
Q Consensus 217 ~WDvImVDgP~Gy~ 230 (318)
+.|+|+||+|.|..
T Consensus 75 ~yD~viiD~~~~~~ 88 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS 88 (206)
T ss_dssp TSSEEEEECCSSSS
T ss_pred CCCEEEEECCCCCC
Confidence 46999999998864
No 62
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=33.57 E-value=1.6e+02 Score=25.14 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHhhhhc
Q 021017 77 PPLPTTVINTLLLYAS 92 (318)
Q Consensus 77 ~~lp~~v~~ALvhYAt 92 (318)
.++|+.+.+|+..+..
T Consensus 19 ~~~~~~v~~a~~~~~~ 34 (371)
T 2e7j_A 19 GKLTEEARQALLEWGD 34 (371)
T ss_dssp CCCCHHHHHHHHHC--
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4577888888877664
No 63
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Probab=33.34 E-value=1.1e+02 Score=25.05 Aligned_cols=62 Identities=10% Similarity=-0.006 Sum_probs=44.9
Q ss_pred CCcCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhh--Hhhh-ccCCcEEEecCChhHHHHhhhh
Q 021017 96 DSYHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLL--WKAL-NHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 96 ~tpqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsll--W~aL-N~gGrTvFLeEd~~~i~~~~~~ 158 (318)
....+..+++..+...+. .+...++|.+|-|.-.+. ++.. .++++-+-+|-++..++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~ 140 (258)
T 2pwy_A 76 SATPTYPKDASAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERN 140 (258)
T ss_dssp SSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 334567778887777776 377889999988765543 3333 4578888888899888887765
No 64
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=33.32 E-value=33 Score=29.43 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhccCCCCc--CCCHHHHHHHHHHHHhcCCCccEEEecCC--chhhhHhhhc-cCCcEEEecCChhHHHHh
Q 021017 81 TTVINTLLLYASRSNDSY--HMTHSELKRISDVIRKCSSPCNFLVFGLT--QETLLWKALN-HNGRTVFIDENRYYAAYF 155 (318)
Q Consensus 81 ~~v~~ALvhYAt~sn~tp--qqt~~Ei~~~~~vL~~~raPCNfLVFGLg--~dsllW~aLN-~gGrTvFLeEd~~~i~~~ 155 (318)
.++++.+..|+- ...-+ +.+...-..+..+++. ..|-++|=.|-| ..++.++... .+|+-+-+|-++.+++.+
T Consensus 24 ~~~l~~~~~~~~-~~~~~~~~i~~~~~~~l~~l~~~-~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a 101 (242)
T 3r3h_A 24 HPALAALRKETS-TMELANMQVAPEQAQFMQMLIRL-TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHA 101 (242)
T ss_dssp CHHHHHHHHTTS-SSGGGGTSCCHHHHHHHHHHHHH-HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCS
T ss_pred CHHHHHHHHHHH-hCCCCCCccCHHHHHHHHHHHhh-cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHH
Confidence 467888888885 33222 4556666666666664 678999999775 4455555443 488999999999888776
Q ss_pred hhh
Q 021017 156 EEL 158 (318)
Q Consensus 156 ~~~ 158 (318)
+++
T Consensus 102 ~~~ 104 (242)
T 3r3h_A 102 HPY 104 (242)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 65
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}
Probab=32.92 E-value=99 Score=25.46 Aligned_cols=59 Identities=10% Similarity=0.034 Sum_probs=40.6
Q ss_pred CCCHHHHHH-HHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKR-ISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~-~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.++..|++. +...+. .+..-.+|-+|-|.-.+.-.....+++-+-+|-|+..++.++++
T Consensus 37 ~~~~~~~~~~~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~ 96 (204)
T 3njr_A 37 QITKSPMRALTLAALA-PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKN 96 (204)
T ss_dssp CCCCHHHHHHHHHHHC-CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHhcC-CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 566667654 444554 36667899998876655433333388888999999998887765
No 66
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=32.23 E-value=1.7e+02 Score=25.95 Aligned_cols=45 Identities=13% Similarity=0.205 Sum_probs=37.5
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..|-++|+.|.|.-.+.-..+.+ +++-+.+|-|+.-++.+++..+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~ 135 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLK 135 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhH
Confidence 56889999999988887777766 4688999999999998887654
No 67
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=31.10 E-value=1.1e+02 Score=25.84 Aligned_cols=52 Identities=12% Similarity=0.022 Sum_probs=40.8
Q ss_pred HHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCC
Q 021017 109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
.+.+.. +.+.++|-+|-|..........+|++.+-+|-++..++.++++.++
T Consensus 50 ~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~ 101 (279)
T 3ccf_A 50 LQLLNP-QPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPH 101 (279)
T ss_dssp HHHHCC-CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT
T ss_pred HHHhCC-CCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCC
Confidence 344443 5678999999988877777677899999999999999988876543
No 68
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=31.04 E-value=20 Score=30.24 Aligned_cols=15 Identities=33% Similarity=0.590 Sum_probs=12.5
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+.|+|+||+|.|..
T Consensus 109 ~~yD~viiD~~~~~~ 123 (263)
T 1hyq_A 109 ESTDILLLDAPAGLE 123 (263)
T ss_dssp HTCSEEEEECCSSSS
T ss_pred hhCCEEEEeCCCCCC
Confidence 358999999998765
No 69
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=30.98 E-value=45 Score=24.10 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=22.1
Q ss_pred cCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 138 HNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 138 ~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
.+-+-+.+|+|+.....++...-. .-|.|..-. +..+.++..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~-~g~~v~~~~---~~~~a~~~l~ 47 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKR-DHWQVEIAH---NGFDAGIKLS 47 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHH-TTCEEEEES---SHHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHH-CCcEEEEeC---CHHHHHHHHH
Confidence 345677888888876655543211 235554333 4444444444
No 70
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=30.91 E-value=14 Score=30.42 Aligned_cols=15 Identities=20% Similarity=0.135 Sum_probs=12.9
Q ss_pred cccEEEEcCCCCCCC
Q 021017 217 DWDVILIDGPRGDGP 231 (318)
Q Consensus 217 ~WDvImVDgP~Gy~p 231 (318)
+.|+|+||.|.|..+
T Consensus 118 ~yD~viiD~p~~~~~ 132 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH 132 (245)
T ss_dssp HCSEEEEEEESSCCT
T ss_pred hCCEEEEeCCCCCch
Confidence 689999999998754
No 71
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=30.24 E-value=1.5e+02 Score=24.38 Aligned_cols=59 Identities=7% Similarity=-0.006 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhc--CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 100 MTHSELKRISDVIRKC--SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 100 qt~~Ei~~~~~vL~~~--raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
....++..+.++++.. +.+.++|=+|-|...........|.+-+-+|-|+..++.++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~ 82 (252)
T 1wzn_A 22 RVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRK 82 (252)
T ss_dssp THHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 3456777888888763 3467899999888776666666688889999999998877754
No 72
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=30.11 E-value=1.6e+02 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=37.1
Q ss_pred CCCccEEEecCCchhhhHhhhcc--CCcEEEecCChhHHHHhhhhCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNH--NGRTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~--gGrTvFLeEd~~~i~~~~~~~p 160 (318)
..|-++|+.|.|.-.+.-..+.+ +++-+.+|=|+..++.+++..|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~ 140 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFP 140 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCH
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhH
Confidence 57889999999988877766665 4688899999999998887654
No 73
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A
Probab=29.96 E-value=48 Score=30.69 Aligned_cols=42 Identities=7% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCC-hhHHH
Q 021017 111 VIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDEN-RYYAA 153 (318)
Q Consensus 111 vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd-~~~i~ 153 (318)
.|++ ...+.+++.|=|.|+..|.-.|+++++.|.|=| |+-++
T Consensus 92 fl~~-~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~ 134 (334)
T 1rjd_A 92 FLVA-NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVE 134 (334)
T ss_dssp HHHH-CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHH
T ss_pred HHHH-CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHH
Confidence 3444 568999999999999999999986777888877 54433
No 74
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=29.81 E-value=19 Score=31.12 Aligned_cols=52 Identities=12% Similarity=0.229 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEe------cCCchhh----hHhhhccCCcEEEecCChhH
Q 021017 98 YHMTHSELKRISDVIRKCSSPCNFLVF------GLTQETL----LWKALNHNGRTVFIDENRYY 151 (318)
Q Consensus 98 pqqt~~Ei~~~~~vL~~~raPCNfLVF------GLg~dsl----lW~aLN~gGrTvFLeEd~~~ 151 (318)
.+...+.+..+.+.++. +... +.|. |-|.-++ .+..-..|-|++.+|-|+.-
T Consensus 16 ~~~~~~~~~~~~r~~~~-~~~~-i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 16 EKEELKILEELRRILSN-KNEA-IVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CHHHHHHHHHHHHHHHH-HCSC-EEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred hhhhHHHHHHHHHHhcC-CCcE-EEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 34455566666777765 3333 3333 4555443 22222356699999999874
No 75
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7
Probab=29.61 E-value=1.1e+02 Score=24.81 Aligned_cols=59 Identities=12% Similarity=-0.055 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhCCC
Q 021017 102 HSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELHPE 161 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~p~ 161 (318)
..-+..+.+.+.. +.+.++|-+|-|...+.......+++-+-+|-++..++.++++...
T Consensus 56 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~ 114 (231)
T 1vbf_A 56 LNLGIFMLDELDL-HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY 114 (231)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh
Confidence 3445555566653 6678999998887666555555668888999999999888876543
No 76
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=29.34 E-value=1.5e+02 Score=26.94 Aligned_cols=54 Identities=9% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhC
Q 021017 106 KRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 106 ~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~ 159 (318)
..+.+.++....+.++|=.|=|.-...-.....|.+.+.+|-|+..++.++++.
T Consensus 142 ~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~ 195 (332)
T 2igt_A 142 EWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQ 195 (332)
T ss_dssp HHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 345555542234578998877666555555555668889999999999888763
No 77
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=29.09 E-value=23 Score=30.15 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=12.7
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+.|+|+||+|.|..
T Consensus 110 ~~yD~iiiD~pp~~~ 124 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLS 124 (257)
T ss_dssp TTCSEEEEECCSSCC
T ss_pred cCCCEEEEeCCCCCC
Confidence 468999999998864
No 78
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=28.95 E-value=21 Score=32.32 Aligned_cols=34 Identities=9% Similarity=0.198 Sum_probs=21.0
Q ss_pred CCccEEEe----cCCchhh----hHhhhccCCcEEEecCChh
Q 021017 117 SPCNFLVF----GLTQETL----LWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 117 aPCNfLVF----GLg~dsl----lW~aLN~gGrTvFLeEd~~ 150 (318)
.+-.++|| |.|.-+. .+..-..|=||+.+|-|+.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 34567777 5565542 3333345668999998875
No 79
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=28.84 E-value=20 Score=31.24 Aligned_cols=15 Identities=53% Similarity=0.899 Sum_probs=12.5
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+.|+|+||+|.|..
T Consensus 102 ~~yD~viiD~p~~~~ 116 (286)
T 2xj4_A 102 AECDFILIDTPGGDS 116 (286)
T ss_dssp HHCSEEEEECCSSCC
T ss_pred hcCCEEEEcCCCCcc
Confidence 368999999998863
No 80
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=28.78 E-value=18 Score=30.26 Aligned_cols=16 Identities=19% Similarity=0.322 Sum_probs=12.9
Q ss_pred ccccEEEEcCCCC-CCC
Q 021017 216 VDWDVILIDGPRG-DGP 231 (318)
Q Consensus 216 ~~WDvImVDgP~G-y~p 231 (318)
-++|+|+||.|.| ..+
T Consensus 66 ~~yD~viiD~p~~~~~~ 82 (209)
T 3cwq_A 66 PKYQNIVIDTQARPEDE 82 (209)
T ss_dssp GGCSEEEEEEECCCSSS
T ss_pred hcCCEEEEeCCCCcCcH
Confidence 4689999999998 543
No 81
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=28.63 E-value=23 Score=29.48 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.1
Q ss_pred cccEEEEcCCCCCC
Q 021017 217 DWDVILIDGPRGDG 230 (318)
Q Consensus 217 ~WDvImVDgP~Gy~ 230 (318)
+.|+|+||+|.|..
T Consensus 113 ~yD~viiD~p~~~~ 126 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE 126 (260)
T ss_dssp TCSEEEEECCSSSS
T ss_pred CCCEEEEcCCCCCC
Confidence 67999999998764
No 82
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=28.24 E-value=76 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=22.1
Q ss_pred cEEEecCChhHHHHhhhhCCCceeEEEE-eecccccHHHHHH
Q 021017 141 RTVFIDENRYYAAYFEELHPEIDVFDVQ-YTTKIRETKELIA 181 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~~p~leay~V~-Y~T~~~ea~~LL~ 181 (318)
+-+.+|+|+.....++...-... |.|. .-....+|-++++
T Consensus 3 ~ilivdd~~~~~~~l~~~L~~~g-~~v~~~~~~~~~a~~~~~ 43 (134)
T 3f6c_A 3 NAIIIDDHPLAIAAIRNLLIKND-IEILAELTEGGSAVQRVE 43 (134)
T ss_dssp EEEEECCCHHHHHHHHHHHHHTT-EEEEEEESSSTTHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhhCC-cEEEEEcCCHHHHHHHHH
Confidence 45778888887666554322222 5554 3344555555543
No 83
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=28.16 E-value=2.1e+02 Score=22.63 Aligned_cols=84 Identities=12% Similarity=0.169 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhH----hhhccCCcE-EEecCChhHHHHhhhhCCCceeEEEEeeccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLW----KALNHNGRT-VFIDENRYYAAYFEELHPEIDVFDVQYTTKI 173 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW----~aLN~gGrT-vFLeEd~~~i~~~~~~~p~leay~V~Y~T~~ 173 (318)
+... +|..+.+.|.+ +.-++.|||.|.-...= ..|+.-|.. .++.+.......+..-.|+--.--+.|.-.-
T Consensus 33 ~~~~-~i~~~~~~i~~--a~~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t 109 (183)
T 2xhz_A 33 YINQ-NFTLACEKMFW--CKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES 109 (183)
T ss_dssp TSSH-HHHHHHHHHHT--CSSCEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCC
T ss_pred HHHH-HHHHHHHHHHh--CCCeEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCC
Confidence 4555 99999999986 34689999999866432 234444544 4554443333233333455455667777666
Q ss_pred ccHHHHHHHHhh
Q 021017 174 RETKELIASAKE 185 (318)
Q Consensus 174 ~ea~~LL~~~r~ 185 (318)
.+.-++++.+|+
T Consensus 110 ~~~~~~~~~ak~ 121 (183)
T 2xhz_A 110 SEITALIPVLKR 121 (183)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 777777777774
No 84
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=27.46 E-value=21 Score=32.78 Aligned_cols=51 Identities=16% Similarity=0.162 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHh-----cCCCccEEEe-----cCCchh----hhHhhh------ccCCcEEEecCChh
Q 021017 100 MTHSELKRISDVIRK-----CSSPCNFLVF-----GLTQET----LLWKAL------NHNGRTVFIDENRY 150 (318)
Q Consensus 100 qt~~Ei~~~~~vL~~-----~raPCNfLVF-----GLg~ds----llW~aL------N~gGrTvFLeEd~~ 150 (318)
.|.+|+..+.+.... -..++..++| |-|.-+ |-|..- ..|-|++.+|=|+.
T Consensus 87 ~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlliD~D~~ 157 (403)
T 3ez9_A 87 LTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVIDLDPQ 157 (403)
T ss_dssp BCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC--------CHHHHHHHHHSCGGGGGGCCCEEEEEESSS
T ss_pred cCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 588888888766311 0235666655 445443 222221 56889999999974
No 85
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=27.33 E-value=26 Score=32.10 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCCccEEEe----cCCchh----hhHhhhccCCcEEEecCChh
Q 021017 116 SSPCNFLVF----GLTQET----LLWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 116 raPCNfLVF----GLg~ds----llW~aLN~gGrTvFLeEd~~ 150 (318)
+.+--++|| |-|.-+ +.+..-..|-|++.+|-|+.
T Consensus 23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~~ 65 (349)
T 3ug7_A 23 KDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDPA 65 (349)
T ss_dssp SCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCTT
T ss_pred cCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 333345555 445444 33444455889999999984
No 86
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=27.31 E-value=54 Score=23.91 Aligned_cols=40 Identities=5% Similarity=0.076 Sum_probs=21.5
Q ss_pred cEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 141 RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
+-+.+|+|+.....++...-. ..|.|..-. +..++++..+
T Consensus 9 ~ilivdd~~~~~~~l~~~L~~-~~~~v~~~~---~~~~a~~~l~ 48 (137)
T 3hdg_A 9 KILIVEDDTDAREWLSTIISN-HFPEVWSAG---DGEEGERLFG 48 (137)
T ss_dssp CEEEECSCHHHHHHHHHHHHT-TCSCEEEES---SHHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHHHHHHh-cCcEEEEEC---CHHHHHHHHh
Confidence 677888888876665543222 234444333 3444444444
No 87
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=27.22 E-value=1.1e+02 Score=24.98 Aligned_cols=47 Identities=11% Similarity=-0.100 Sum_probs=35.9
Q ss_pred CCCccEEEecCCchhhhHhhhc--cCCcEEEecCChhHHHHhhhhCCCc
Q 021017 116 SSPCNFLVFGLTQETLLWKALN--HNGRTVFIDENRYYAAYFEELHPEI 162 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN--~gGrTvFLeEd~~~i~~~~~~~p~l 162 (318)
+.+.++|-+|-|...+...... ++++.+-+|-++..++.++++.+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~ 80 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNT 80 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTS
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCc
Confidence 4678999998876665544444 4889999999999999888765544
No 88
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}
Probab=27.17 E-value=1.1e+02 Score=24.27 Aligned_cols=54 Identities=15% Similarity=0.015 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCCCccEEEecCCchhh-hHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 105 LKRISDVIRKCSSPCNFLVFGLTQETL-LWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 105 i~~~~~vL~~~raPCNfLVFGLg~dsl-lW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
+....+.+.....+.++|=+|-|.... +....++|.+.+-+|-++..++.++++
T Consensus 11 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~ 65 (209)
T 2p8j_A 11 LYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENF 65 (209)
T ss_dssp HHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHH
Confidence 444445555556788999999987764 333355678888999999988877754
No 89
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=27.07 E-value=66 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.131 Sum_probs=23.1
Q ss_pred CcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 140 GRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 140 GrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
-+-+.+|+|+.....++...- ..|+|..- .+..+.++..+
T Consensus 5 ~~ilivdd~~~~~~~l~~~l~--~~~~v~~~---~~~~~a~~~l~ 44 (133)
T 3nhm_A 5 PKVLIVENSWTMRETLRLLLS--GEFDCTTA---ADGASGLQQAL 44 (133)
T ss_dssp CEEEEECSCHHHHHHHHHHHT--TTSEEEEE---SSHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHh--CCcEEEEE---CCHHHHHHHHh
Confidence 466788888887766654432 33555533 44455555444
No 90
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43
Probab=26.88 E-value=1.8e+02 Score=23.28 Aligned_cols=60 Identities=10% Similarity=-0.142 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHhc-CCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRISDVIRKC-SSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~-raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
......+..+.+.|.+. ..+-++|-+|-|...+.......|.+.+-+|-++..++.++++
T Consensus 18 ~~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~ 78 (246)
T 1y8c_A 18 VDYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK 78 (246)
T ss_dssp CCHHHHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHH
Confidence 34455667778888762 1678999999888777666666677888899999998877765
No 91
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.77 E-value=22 Score=30.17 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.4
Q ss_pred ccccEEEEcCCCCCC
Q 021017 216 VDWDVILIDGPRGDG 230 (318)
Q Consensus 216 ~~WDvImVDgP~Gy~ 230 (318)
-+.|+|+||+|.|..
T Consensus 143 ~~yD~viiD~pp~~~ 157 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD 157 (267)
T ss_dssp TTCSEEEEEECSSCS
T ss_pred cCCCEEEEECcCCcc
Confidence 358999999998764
No 92
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=26.43 E-value=19 Score=33.27 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=20.8
Q ss_pred CccEEEe----cCCchhh----hHhhh--ccCCcEEEecCChh
Q 021017 118 PCNFLVF----GLTQETL----LWKAL--NHNGRTVFIDENRY 150 (318)
Q Consensus 118 PCNfLVF----GLg~dsl----lW~aL--N~gGrTvFLeEd~~ 150 (318)
+--++|+ |.|.-+. -++.- ..|-|++.+|-|+.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~~ 59 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDPA 59 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4456777 5565542 33333 56778999999974
No 93
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Probab=26.40 E-value=1.5e+02 Score=25.24 Aligned_cols=60 Identities=8% Similarity=0.053 Sum_probs=44.6
Q ss_pred cCCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhH--hhh-ccCCcEEEecCChhHHHHhhhh
Q 021017 98 YHMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLW--KAL-NHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 98 pqqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW--~aL-N~gGrTvFLeEd~~~i~~~~~~ 158 (318)
..+..+++..+...+.- +...++|.+|-|.-.+.- +.. .++++-+.+|-++..++.++++
T Consensus 94 ~~~~~~~~~~i~~~~~~-~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~ 156 (277)
T 1o54_A 94 QIVYPKDSSFIAMMLDV-KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESN 156 (277)
T ss_dssp CCCCHHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHhCC-CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHH
Confidence 35677888888887763 777899999887765433 333 4578888999999888887765
No 94
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=26.29 E-value=1.3e+02 Score=24.11 Aligned_cols=54 Identities=11% Similarity=-0.032 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 105 LKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 105 i~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
...+.+++...+.+..+|-+|-|...........|.+-+-+|-++..++.++++
T Consensus 31 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 84 (211)
T 3e23_A 31 SATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRR 84 (211)
T ss_dssp CHHHHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred hHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHh
Confidence 445666676666778999999988877776667788888999999998888765
No 95
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13
Probab=26.02 E-value=1.7e+02 Score=24.60 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhh---hccCCcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKA---LNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~a---LN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.+..+++..+...+. .+...++|..|-|.-.+.-.. ++++++-+-+|-++..++.++++
T Consensus 82 ~~~~~~~~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 143 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRN 143 (280)
T ss_dssp CCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHH
T ss_pred eecHHHHHHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 456777877777776 377789999988766544333 34578888899999988877765
No 96
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=25.61 E-value=22 Score=32.51 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCccEEEe-----cCCchh----hhHhhh------ccCCcEEEecCChh
Q 021017 99 HMTHSELKRISDVIR-----KCSSPCNFLVF-----GLTQET----LLWKAL------NHNGRTVFIDENRY 150 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~-----~~raPCNfLVF-----GLg~ds----llW~aL------N~gGrTvFLeEd~~ 150 (318)
.+|.++|..+.+.+. .-..++..++| |-|.-+ |-|..- ..|-|++.+|=|+.
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q 154 (398)
T 3ez2_A 83 AMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQ 154 (398)
T ss_dssp CBCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTT
T ss_pred cCCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCC
Confidence 358999998888862 11234666666 455544 223222 46889999999974
No 97
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=25.59 E-value=2.2e+02 Score=24.21 Aligned_cols=107 Identities=12% Similarity=0.064 Sum_probs=52.4
Q ss_pred CCCCCCHHHHHHHhhhhccCCCCcC--CCHHHH-HHHHHHHHhcCCCccEEEecCCchhhhH---hhhccCCcEEEecCC
Q 021017 75 GNPPLPTTVINTLLLYASRSNDSYH--MTHSEL-KRISDVIRKCSSPCNFLVFGLTQETLLW---KALNHNGRTVFIDEN 148 (318)
Q Consensus 75 ~~~~lp~~v~~ALvhYAt~sn~tpq--qt~~Ei-~~~~~vL~~~raPCNfLVFGLg~dsllW---~aLN~gGrTvFLeEd 148 (318)
+..++|+.|.+|+..+.. ....+. .-..|+ +.+++.+. +..+-.=++|+=|-...+- ..++ .|..|.+.+.
T Consensus 9 gp~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~v~~~~g~t~al~~~~~~~~-~gd~vi~~~~ 85 (384)
T 3zrp_A 9 GPTTIKEDVLVAGLENNV-GFTSKEFVEALAYSLKGLRYVMG-ASKNYQPLIIPGGGTSAMESVTSLLK-PNDKILVVSN 85 (384)
T ss_dssp SCSCCCHHHHHHTTCCSC-CTTSHHHHHHHHHHHHHHHHHHT-CCTTSEEEEEESCHHHHHHHGGGGCC-TTCEEEEECS
T ss_pred CCCCCCHHHHHHhhcccc-ccccHHHHHHHHHHHHHHHHHhC-CCCCCcEEEEcCCcHHHHHHHHhhcC-CCCEEEEecC
Confidence 456899999999988764 332221 112222 22334443 2322244566555443333 3333 5677888777
Q ss_pred hhHHHHhh--hhCCCceeEEEEeecc-cccHHHHHHHHh
Q 021017 149 RYYAAYFE--ELHPEIDVFDVQYTTK-IRETKELIASAK 184 (318)
Q Consensus 149 ~~~i~~~~--~~~p~leay~V~Y~T~-~~ea~~LL~~~r 184 (318)
.++-..+. .+.-+.+...|..+.. .-+.++|.+..+
T Consensus 86 ~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~ 124 (384)
T 3zrp_A 86 GVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVR 124 (384)
T ss_dssp SHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHH
Confidence 66433222 1234555555544321 124555554444
No 98
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}
Probab=25.57 E-value=2.3e+02 Score=24.25 Aligned_cols=56 Identities=11% Similarity=-0.054 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhh---ccCCcEEEecCChhHHHHhhhh
Q 021017 101 THSELKRISDVIRKCSSPCNFLVFGLTQETLLWKAL---NHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 101 t~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aL---N~gGrTvFLeEd~~~i~~~~~~ 158 (318)
...=+..+...+. ..+-++|=+|-|......... +++.+-+-+|=++..++.++++
T Consensus 22 ~~~~~~~l~~~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~ 80 (299)
T 3g5t_A 22 PSDFYKMIDEYHD--GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVI 80 (299)
T ss_dssp CHHHHHHHHHHCC--SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc--CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHH
Confidence 3333344444332 367889999998888877777 6888999999999999888765
No 99
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=25.23 E-value=1.8e+02 Score=26.67 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhhC--CCc-eeEEEEeecccccHHHHHHHHhhhcCCCC
Q 021017 116 SSPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEELH--PEI-DVFDVQYTTKIRETKELIASAKEQIRNEC 191 (318)
Q Consensus 116 raPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~~--p~l-eay~V~Y~T~~~ea~~LL~~~r~~~~~~C 191 (318)
...-++|=.|-|.-...-.....| ++.+-+|-|+..++.++++. .++ +. .| +....++.+++......
T Consensus 219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~-~v--~~~~~D~~~~~~~~~~~----- 290 (396)
T 3c0k_A 219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLS-KA--EFVRDDVFKLLRTYRDR----- 290 (396)
T ss_dssp CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGG-GE--EEEESCHHHHHHHHHHT-----
T ss_pred hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCcc-ce--EEEECCHHHHHHHHHhc-----
Confidence 456688877666555444444444 58899999999999888653 233 21 12 22345666665433210
Q ss_pred cccccccccccccccCCCCcccccccccEEEEcCCC
Q 021017 192 KPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPR 227 (318)
Q Consensus 192 ~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~ 227 (318)
+-.+|+|++|-|+
T Consensus 291 -----------------------~~~fD~Ii~dpP~ 303 (396)
T 3c0k_A 291 -----------------------GEKFDVIVMDPPK 303 (396)
T ss_dssp -----------------------TCCEEEEEECCSS
T ss_pred -----------------------CCCCCEEEECCCC
Confidence 2357999999996
No 100
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.40 E-value=1.3e+02 Score=22.19 Aligned_cols=41 Identities=10% Similarity=0.333 Sum_probs=23.8
Q ss_pred CcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 140 GRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 140 GrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
.+-+.+|+|+.....++...-. .-|.|.. +.+..+.++..+
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~-~g~~v~~---~~~~~~a~~~l~ 45 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKD-EPYDIFH---VETGRDAIQFIE 45 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTT-SSSEEEE---ESSHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHh-cCceEEE---eCCHHHHHHHHH
Confidence 3678889998887766655433 2355543 344444444444
No 101
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=24.39 E-value=1.3e+02 Score=24.60 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=36.2
Q ss_pred cCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 115 CSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 115 ~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.+.+.++|-+|-|...+.......|++-+-+|-++..++.++++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 80 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQK 80 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHH
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 35678999999988777766666788889999999999888776
No 102
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=23.68 E-value=1.4e+02 Score=23.07 Aligned_cols=38 Identities=24% Similarity=0.221 Sum_probs=28.4
Q ss_pred cEEEecCCchh-hhHhhhc-cCCcEEEecCChhHHHHhhh
Q 021017 120 NFLVFGLTQET-LLWKALN-HNGRTVFIDENRYYAAYFEE 157 (318)
Q Consensus 120 NfLVFGLg~ds-llW~aLN-~gGrTvFLeEd~~~i~~~~~ 157 (318)
+++|+|+|.=. .+-..|. .|-..+-+|.|++.++.+++
T Consensus 9 ~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~ 48 (140)
T 3fwz_A 9 HALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE 48 (140)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 68999999743 3333443 46688889999999998876
No 103
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=23.60 E-value=96 Score=29.02 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=23.8
Q ss_pred ccEEEEcCCCCCCC--CCCCCcch-----------hhhHHHHhhhcCCCCCcceEEEecCCchHHHhhh
Q 021017 218 WDVILIDGPRGDGP--DGPGRMSP-----------IFTAGVLARSKKGGNPKTHIFVHDYYRHVERMCG 273 (318)
Q Consensus 218 WDvImVDgP~Gy~p--eaPGRM~a-----------IyTAavmAR~r~~g~~~TdVfVHDvdR~VE~~~s 273 (318)
-|+|+||....+.+ +-.|+|+. -+.-.+..-+++. +.+=|++..+.|.++..|.
T Consensus 153 ~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~--~~~VI~~nq~~~~~~~~fg 219 (366)
T 1xp8_A 153 IDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKT--GTAAIFINQVREKIGVMYG 219 (366)
T ss_dssp CSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTT--CCEEEEEEEC---------
T ss_pred CCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHc--CCEEEEEEecccccCcccC
Confidence 48999999998875 33465532 1111111112333 3677999999999987763
No 104
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=23.42 E-value=1.3e+02 Score=24.22 Aligned_cols=56 Identities=13% Similarity=0.056 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCC-cEEEecCChhHHHHhhhhCC
Q 021017 104 ELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNG-RTVFIDENRYYAAYFEELHP 160 (318)
Q Consensus 104 Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gG-rTvFLeEd~~~i~~~~~~~p 160 (318)
+...+.+.+.. ..+.++|-+|-|...........|. +.+-+|-++..++.++++.+
T Consensus 31 ~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~ 87 (243)
T 3bkw_A 31 EWPALRAMLPE-VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP 87 (243)
T ss_dssp THHHHHHHSCC-CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC
T ss_pred hHHHHHHhccc-cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc
Confidence 44556667764 5678999998887666555555555 78889999999988887654
No 105
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A
Probab=23.01 E-value=1.7e+02 Score=23.03 Aligned_cols=50 Identities=10% Similarity=-0.019 Sum_probs=35.8
Q ss_pred HHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhhC
Q 021017 109 SDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEELH 159 (318)
Q Consensus 109 ~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~~ 159 (318)
.+.+...+ |.++|-+|-|.-.+.......|.+.+-+|-++..++.++++.
T Consensus 22 ~~~~~~~~-~~~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~ 71 (202)
T 2kw5_A 22 VSVANQIP-QGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLA 71 (202)
T ss_dssp HHHHHHSC-SSEEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHhCC-CCCEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 33444434 349999988877666655666778888999999888877663
No 106
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=22.86 E-value=42 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.3
Q ss_pred hHhhhccCCcEEEe------cCChhHHHHhhhhCCCceeEE
Q 021017 132 LWKALNHNGRTVFI------DENRYYAAYFEELHPEIDVFD 166 (318)
Q Consensus 132 lW~aLN~gGrTvFL------eEd~~~i~~~~~~~p~leay~ 166 (318)
+|..|++||+-||- +|++.-|+.+.+++|+.+.-.
T Consensus 197 ~~~~LkpgG~lv~stcs~~~~ene~~v~~~l~~~~~~~~~~ 237 (274)
T 3ajd_A 197 GIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELII 237 (274)
T ss_dssp HHHHEEEEEEEEEEESCCCTTSSHHHHHHHHHHCSSEEEEC
T ss_pred HHHhCCCCCEEEEEECCCChHHhHHHHHHHHHhCCCcEEec
Confidence 36678999998873 589999999999999877543
No 107
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=22.83 E-value=95 Score=23.13 Aligned_cols=22 Identities=14% Similarity=0.098 Sum_probs=14.8
Q ss_pred ccCCcEEEecCChhHHHHhhhh
Q 021017 137 NHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 137 N~gGrTvFLeEd~~~i~~~~~~ 158 (318)
+.+.|-+.+|+|+.....++..
T Consensus 13 ~~~~~iLivdd~~~~~~~l~~~ 34 (152)
T 3eul_A 13 PEKVRVVVGDDHPLFREGVVRA 34 (152)
T ss_dssp -CCEEEEEECSSHHHHHHHHHH
T ss_pred CceEEEEEEcCCHHHHHHHHHH
Confidence 3456778889998876665543
No 108
>3rjr_A Transforming growth factor beta-1; TGF beta, activation, integrin, cytokine; HET: NAG; 3.05A {Sus scrofa}
Probab=22.61 E-value=22 Score=33.95 Aligned_cols=29 Identities=21% Similarity=0.422 Sum_probs=21.6
Q ss_pred ccccccccCCCCcccc-cccccEEEEcCCCCCCC
Q 021017 199 FSECKLGINDLPNHVY-EVDWDVILIDGPRGDGP 231 (318)
Q Consensus 199 ~S~CkLAl~~LP~evY-e~~WDvImVDgP~Gy~p 231 (318)
...|.+ +.|-=.|= |+-||+|+ +|+||.+
T Consensus 263 ~~~Ccr--~~~~VdF~~dlGW~WIi--aP~gy~a 292 (363)
T 3rjr_A 263 EKNCCV--RQLYIDFRKDLGWKWIH--EPKGYHA 292 (363)
T ss_dssp CCSSEE--ECCEEEHHHHHCCCSEE--ECSEEEC
T ss_pred cCCccc--cceEEEeecccCcceec--CCCcccc
Confidence 346764 57777775 89999887 7999965
No 109
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=22.54 E-value=1.2e+02 Score=23.29 Aligned_cols=18 Identities=11% Similarity=0.530 Sum_probs=12.9
Q ss_pred cEEEecCChhHHHHhhhh
Q 021017 141 RTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~ 158 (318)
+-+.+|+|+.....++..
T Consensus 27 ~ILivdd~~~~~~~l~~~ 44 (164)
T 3t8y_A 27 RVLVVDDSAFMRMVLKDI 44 (164)
T ss_dssp EEEEECSCHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHH
Confidence 567888888876666543
No 110
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=22.29 E-value=1.2e+02 Score=22.77 Aligned_cols=41 Identities=7% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCcEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHH
Q 021017 139 NGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180 (318)
Q Consensus 139 gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL 180 (318)
..+-+.+|+|+.....++...-.. -|.|..-....+|-+++
T Consensus 14 ~~~ILivdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l 54 (153)
T 3hv2_A 14 RPEILLVDSQEVILQRLQQLLSPL-PYTLHFARDATQALQLL 54 (153)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTS-SCEEEEESSHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHhccc-CcEEEEECCHHHHHHHH
Confidence 456788899988776666543332 26665434444444433
No 111
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=22.28 E-value=31 Score=31.84 Aligned_cols=13 Identities=15% Similarity=0.491 Sum_probs=10.9
Q ss_pred cccccEEEEcCCC
Q 021017 215 EVDWDVILIDGPR 227 (318)
Q Consensus 215 e~~WDvImVDgP~ 227 (318)
+-+||+|+||.|.
T Consensus 136 ~~~yD~VIiDtpP 148 (334)
T 3iqw_A 136 SLSYETIVFDTAP 148 (334)
T ss_dssp TSSCSEEEEECCC
T ss_pred hCCCCEEEEeCCC
Confidence 3589999999876
No 112
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=22.12 E-value=32 Score=30.94 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=12.9
Q ss_pred HhhhccCCcEEEecCChh
Q 021017 133 WKALNHNGRTVFIDENRY 150 (318)
Q Consensus 133 W~aLN~gGrTvFLeEd~~ 150 (318)
|..-..|-|++.+|-|+.
T Consensus 36 ~~lA~~G~rVLlvD~D~~ 53 (324)
T 3zq6_A 36 LWMARSGKKTLVISTDPA 53 (324)
T ss_dssp HHHHHTTCCEEEEECCSS
T ss_pred HHHHHCCCcEEEEeCCCC
Confidence 444455889999999873
No 113
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=21.99 E-value=3.7e+02 Score=23.20 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHhhhhccCCCCcCCCHHHHHHHHHHHHhc-C-CCc-cEEEecCCchhh---hHhhhccCCcEEEecCC
Q 021017 75 GNPPLPTTVINTLLLYASRSNDSYHMTHSELKRISDVIRKC-S-SPC-NFLVFGLTQETL---LWKALNHNGRTVFIDEN 148 (318)
Q Consensus 75 ~~~~lp~~v~~ALvhYAt~sn~tpqqt~~Ei~~~~~vL~~~-r-aPC-NfLVFGLg~dsl---lW~aLN~gGrTvFLeEd 148 (318)
+..++|+.|.+|+..+.. ..-. .........+.+-|++. . .|- ++++..=|.+.+ +...++ .|..|.+++.
T Consensus 41 ~~~~~~~~v~~a~~~~~~-~~~~-~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~~~-~gd~Vl~~~~ 117 (393)
T 1vjo_A 41 GPSNAHPSVLQAMNVSPV-GHLD-PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVE-PGDVVLIGVA 117 (393)
T ss_dssp SCCCCCHHHHHHHSSCCC-CTTS-HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHHCC-TTCEEEEEES
T ss_pred CCCCCCHHHHHHHhcccc-cccC-HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhccC-CCCEEEEEcC
Confidence 356899999999988774 2111 11223344444444441 1 244 444443333332 333344 4567777664
Q ss_pred hh----HHHHhhhhCCCceeEEEEeecc-cccHHHHHHHHh
Q 021017 149 RY----YAAYFEELHPEIDVFDVQYTTK-IRETKELIASAK 184 (318)
Q Consensus 149 ~~----~i~~~~~~~p~leay~V~Y~T~-~~ea~~LL~~~r 184 (318)
.+ |...++. -+.+...|..+.. .-+.++|.+..+
T Consensus 118 ~~~~~~~~~~~~~--~g~~~~~v~~~~~~~~d~~~l~~~l~ 156 (393)
T 1vjo_A 118 GYFGNRLVDMAGR--YGADVRTISKPWGEVFSLEELRTALE 156 (393)
T ss_dssp SHHHHHHHHHHHH--TTCEEEEEECCTTCCCCHHHHHHHHH
T ss_pred ChhHHHHHHHHHH--cCCceEEEecCCCCCCCHHHHHHHHh
Confidence 33 2233332 2445555544321 124455544443
No 114
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=21.90 E-value=36 Score=31.44 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=31.9
Q ss_pred ccEEEEcCCCCCCC--CCCCCcchh--------hh---HHHHhhhcCCCCCcceEEEecCCchHHHhh----------hh
Q 021017 218 WDVILIDGPRGDGP--DGPGRMSPI--------FT---AGVLARSKKGGNPKTHIFVHDYYRHVERMC----------GD 274 (318)
Q Consensus 218 WDvImVDgP~Gy~p--eaPGRM~aI--------yT---AavmAR~r~~g~~~TdVfVHDvdR~VE~~~----------s~ 274 (318)
=|+|+||-+....+ +-.|+|+-. .. -.+....++. +.|=||+..+.+.++..| +.
T Consensus 140 ~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~--~~tVI~inh~~~~~~~~~~~p~~~~gg~~l 217 (349)
T 2zr9_A 140 LDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNS--GTTAIFINELREKIGVMFGSPETTTGGKAL 217 (349)
T ss_dssp CSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHH--TCEEEEEEECC-----------CCSSHHHH
T ss_pred CCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHh--CCEEEEEeccccccCcccCCCcccCCchHh
Confidence 48999999998875 333554321 11 1111111233 367899999999888766 35
Q ss_pred hhcccccc
Q 021017 275 EFLCKENL 282 (318)
Q Consensus 275 eFLC~~nl 282 (318)
+|.|+--+
T Consensus 218 ~~~ad~~l 225 (349)
T 2zr9_A 218 KFYASVRL 225 (349)
T ss_dssp HHHCSEEE
T ss_pred hhccceEE
Confidence 78887533
No 115
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=21.77 E-value=32 Score=30.79 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=11.9
Q ss_pred ccccEEEEcCCCCC
Q 021017 216 VDWDVILIDGPRGD 229 (318)
Q Consensus 216 ~~WDvImVDgP~Gy 229 (318)
-++|+|+||+|.+.
T Consensus 212 ~~yD~VIIDtpp~~ 225 (299)
T 3cio_A 212 DHYDLVIVDTPPML 225 (299)
T ss_dssp HHCSEEEEECCCTT
T ss_pred hCCCEEEEcCCCCc
Confidence 46899999999865
No 116
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=21.72 E-value=32 Score=32.55 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=9.9
Q ss_pred ccccEEEEcCCC
Q 021017 216 VDWDVILIDGPR 227 (318)
Q Consensus 216 ~~WDvImVDgP~ 227 (318)
-+||+|+||+|.
T Consensus 123 ~~yD~VIvDtpP 134 (374)
T 3igf_A 123 GKYDTIVYDGTG 134 (374)
T ss_dssp TCCSEEEEECCC
T ss_pred cCCCEEEEeCCC
Confidence 369999999774
No 117
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43
Probab=21.51 E-value=2.7e+02 Score=22.13 Aligned_cols=52 Identities=8% Similarity=-0.029 Sum_probs=35.3
Q ss_pred HHHHHH-HhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 107 RISDVI-RKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 107 ~~~~vL-~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.+.+.| +.+..+.++|-.|-|...+.-.....+.+-+-+|-|+..++.++++
T Consensus 27 ~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 79 (227)
T 1ve3_A 27 TLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREY 79 (227)
T ss_dssp HHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHH
Confidence 333433 3334567899998887766655555566888888888888877644
No 118
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Probab=21.29 E-value=1.6e+02 Score=23.65 Aligned_cols=56 Identities=13% Similarity=-0.015 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC---CcEEEecCChhHHHHhhhh
Q 021017 102 HSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN---GRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g---GrTvFLeEd~~~i~~~~~~ 158 (318)
..-+..+.+.+.. +.+-++|.+|-|.-.+.......+ ++-+-+|-++..++.++++
T Consensus 63 ~~~~~~~~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~ 121 (215)
T 2yxe_A 63 IHMVGMMCELLDL-KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERT 121 (215)
T ss_dssp HHHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCC-CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Confidence 3344455555543 667799999887665544444333 7888888888888877765
No 119
>4a1x_C CP5-46-A peptide; hydrolase-peptide complex, unmodified inhibitory peptides; 1.90A {Synthetic construct} PDB: 4a1t_C
Probab=21.26 E-value=44 Score=21.18 Aligned_cols=11 Identities=64% Similarity=1.207 Sum_probs=7.9
Q ss_pred EEEEcCCCCCCC
Q 021017 220 VILIDGPRGDGP 231 (318)
Q Consensus 220 vImVDgP~Gy~p 231 (318)
|-+.||| ||.|
T Consensus 7 vylldgp-gydp 17 (26)
T 4a1x_C 7 VYLLDGP-GYDP 17 (26)
T ss_pred EEEecCC-CCCc
Confidence 5578988 6765
No 120
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*
Probab=21.25 E-value=1.8e+02 Score=22.59 Aligned_cols=50 Identities=14% Similarity=0.081 Sum_probs=36.2
Q ss_pred HHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 108 ISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 108 ~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
+.+.+.. ..+-++|-+|-|.....-.....|.+.+-+|-++..++.++++
T Consensus 24 l~~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~ 73 (199)
T 2xvm_A 24 VLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERI 73 (199)
T ss_dssp HHHHTTT-SCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred HHHHhhc-cCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence 4455554 5688999998877665555555577888889999888877654
No 121
>3hh2_A Growth/differentiation factor 8; protein-protein complex, TB domain, cystine knot motif, TGF- fold, disulfide linked dimer, CLE PAIR of basic residues, cytokine; HET: CIT; 2.15A {Mus musculus} SCOP: g.17.1.0 PDB: 3sek_B*
Probab=21.23 E-value=17 Score=29.03 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=26.9
Q ss_pred CCCCcccccccccccccccCCCCcccccccccEEEEcCCCCCCC
Q 021017 188 RNECKPVQNLLFSECKLGINDLPNHVYEVDWDVILIDGPRGDGP 231 (318)
Q Consensus 188 ~~~C~p~~~~~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~p 231 (318)
+-+|.+.. ....|.+ +.|-=.|=|+-||.|+ +|+||.+
T Consensus 3 ~~~C~~~~--~~~~C~r--~~l~V~F~dlGWdWIi--aP~~y~a 40 (109)
T 3hh2_A 3 GLDCDEHS--TESRCCR--YPLTVDFEAFGWDWII--APKRYKA 40 (109)
T ss_dssp SCBCCTTC--CCCBSEE--ECCEEEHHHHTCTTEE--ECSEEEC
T ss_pred cccCCCCC--CCCCcEE--EEEEEeHHHcCCCeEe--CCCcccc
Confidence 44675542 2356776 5788888899999876 6999954
No 122
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=21.04 E-value=86 Score=22.45 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=21.4
Q ss_pred cEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHHHHHh
Q 021017 141 RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELIASAK 184 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL~~~r 184 (318)
+-+.+|+|+.....++...-.. -|+|..-+ +..+.++..+
T Consensus 5 ~ilivdd~~~~~~~l~~~L~~~-g~~v~~~~---~~~~a~~~l~ 44 (127)
T 3i42_A 5 QALIVEDYQAAAETFKELLEML-GFQADYVM---SGTDALHAMS 44 (127)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TEEEEEES---SHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHc-CCCEEEEC---CHHHHHHHHH
Confidence 5677888887766555432111 25555433 4445554444
No 123
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=20.93 E-value=2.7e+02 Score=23.20 Aligned_cols=60 Identities=10% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccC-CcEEEecCChhHHHHhhhh
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHN-GRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~g-GrTvFLeEd~~~i~~~~~~ 158 (318)
..+...+..+.+.|...+.+.++|-+|-|...+.-.....+ ++-+-+|=++..++.++++
T Consensus 28 ~~~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~ 88 (267)
T 3kkz_A 28 PGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRN 88 (267)
T ss_dssp SCCHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHH
Confidence 34666666666666645678899999988776665555544 4888899999988877654
No 124
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=20.73 E-value=2.6e+02 Score=22.29 Aligned_cols=80 Identities=18% Similarity=0.099 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCccEEEecCCchhhhH----hhhccCCcEEEecCChhHHHHhhhhCCCceeEEEEeecccc
Q 021017 99 HMTHSELKRISDVIRKCSSPCNFLVFGLTQETLLW----KALNHNGRTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIR 174 (318)
Q Consensus 99 qqt~~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW----~aLN~gGrTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ 174 (318)
+...++|..+.+.|.+++ ++.|||.|.....= .-|..-|..++...+.. .....|+--.--+.+.-.-.
T Consensus 21 ~l~~~~i~~~~~~i~~a~---~I~i~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~----~~~~~~~d~vI~iS~sG~t~ 93 (186)
T 1m3s_A 21 YISNEEADQLADHILSSH---QIFTAGAGRSGLMAKSFAMRLMHMGFNAHIVGEIL----TPPLAEGDLVIIGSGSGETK 93 (186)
T ss_dssp TCCHHHHHHHHHHHHHCS---CEEEECSHHHHHHHHHHHHHHHHTTCCEEETTSTT----CCCCCTTCEEEEECSSSCCH
T ss_pred hcCHHHHHHHHHHHHcCC---eEEEEecCHHHHHHHHHHHHHHhcCCeEEEeCccc----ccCCCCCCEEEEEcCCCCcH
Confidence 567789999999998744 99999999866432 22334455555544432 22223333445566666566
Q ss_pred cHHHHHHHHhh
Q 021017 175 ETKELIASAKE 185 (318)
Q Consensus 175 ea~~LL~~~r~ 185 (318)
+.-++++.+|+
T Consensus 94 ~~~~~~~~ak~ 104 (186)
T 1m3s_A 94 SLIHTAAKAKS 104 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777777775
No 125
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=20.65 E-value=1e+02 Score=22.59 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=20.5
Q ss_pred cEEEecCChhHHHHhhhhCCCceeEEEEeecccccHHHHH
Q 021017 141 RTVFIDENRYYAAYFEELHPEIDVFDVQYTTKIRETKELI 180 (318)
Q Consensus 141 rTvFLeEd~~~i~~~~~~~p~leay~V~Y~T~~~ea~~LL 180 (318)
+-+.+|+|+.....++...-.. -|.|..-+...+|.+++
T Consensus 5 ~ilivdd~~~~~~~l~~~l~~~-g~~v~~~~~~~~a~~~~ 43 (143)
T 3jte_A 5 KILVIDDESTILQNIKFLLEID-GNEVLTASSSTEGLRIF 43 (143)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-TCEEEEESSHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhC-CceEEEeCCHHHHHHHH
Confidence 5677888888766655432111 15555434444444433
No 126
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=20.64 E-value=35 Score=30.08 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhc--CCCccEEEe-c----CCchhh----hHhhhccCCcEEEecCChh
Q 021017 102 HSELKRISDVIRKC--SSPCNFLVF-G----LTQETL----LWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 102 ~~Ei~~~~~vL~~~--raPCNfLVF-G----Lg~dsl----lW~aLN~gGrTvFLeEd~~ 150 (318)
.+.++.+..-|+.. ..+.+.++| | -|.-+. .+..-..|-|++.+|-|..
T Consensus 63 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~~ 122 (271)
T 3bfv_A 63 SEKFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDMR 122 (271)
T ss_dssp HHHHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred HHHHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 45566665555532 246666655 3 344332 2222235679999999953
No 127
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=20.53 E-value=35 Score=30.53 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHh--cCCCccEEEe-----cCCchhh----hHhhhccCCcEEEecCChh
Q 021017 102 HSELKRISDVIRK--CSSPCNFLVF-----GLTQETL----LWKALNHNGRTVFIDENRY 150 (318)
Q Consensus 102 ~~Ei~~~~~vL~~--~raPCNfLVF-----GLg~dsl----lW~aLN~gGrTvFLeEd~~ 150 (318)
.+.++.+..-|+- ...+++.++| |-|.-+. .+..-..|-|++.+|-|+.
T Consensus 73 ~Ea~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 73 IEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp HHHHHHHHHHHHHHSTTTTCCEEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 3445555544432 1346676665 4444332 2222234679999999975
No 128
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}
Probab=20.06 E-value=2.1e+02 Score=22.72 Aligned_cols=55 Identities=5% Similarity=-0.030 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhcCCCccEEEecCCchhhhHhhhccCCcEEEecCChhHHHHhhhh
Q 021017 103 SELKRISDVIRKCSSPCNFLVFGLTQETLLWKALNHNGRTVFIDENRYYAAYFEEL 158 (318)
Q Consensus 103 ~Ei~~~~~vL~~~raPCNfLVFGLg~dsllW~aLN~gGrTvFLeEd~~~i~~~~~~ 158 (318)
.-+..+.+.+.. +.+.++|-+|-|.-...-.....+++-+-+|-++..++.++++
T Consensus 64 ~~~~~~~~~l~~-~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~ 118 (210)
T 3lbf_A 64 YMVARMTELLEL-TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRR 118 (210)
T ss_dssp HHHHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHH
Confidence 334455555553 6788999998876554433333478888899999888887765
Done!