BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021018
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W63|M Chain M, Ap1 Clathrin Adaptor Core
pdb|1W63|N Chain N, Ap1 Clathrin Adaptor Core
pdb|1W63|O Chain O, Ap1 Clathrin Adaptor Core
pdb|1W63|P Chain P, Ap1 Clathrin Adaptor Core
pdb|1W63|R Chain R, Ap1 Clathrin Adaptor Core
pdb|1W63|V Chain V, Ap1 Clathrin Adaptor Core
Length = 423
Score = 402 bits (1033), Expect = e-112, Method: Compositional matrix adjust.
Identities = 184/306 (60%), Positives = 250/306 (81%), Gaps = 3/306 (0%)
Query: 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFI 63
+ASA+++LD+KG+VLI R+YRGDV + E F +EKE + +P++ GV +M+I
Sbjct: 2 SASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGM-LSPILAHGGVRFMWI 60
Query: 64 QHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDF 123
+HNN+YL+A S++N + + FL++V VF YF+ELEEES+RDNFV++YELLDE+MDF
Sbjct: 61 KHNNLYLVATSKKNACVSLVFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDF 120
Query: 124 GFPQFTEAKILSEFIKTDAYRMEV-TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVN 182
G+PQ T++KIL EFI + +++E RPP VTNAVSWRSEGI+Y+KNEVFLDV+E+VN
Sbjct: 121 GYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSWRSEGIKYRKNEVFLDVIEAVN 180
Query: 183 ILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242
+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+VL + GR K K+++L+D+KFH
Sbjct: 181 LLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGRG-KSKSVELEDVKFH 239
Query: 243 QCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302
QCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPLIW+E+ IE+HS SRIE MVKA+S
Sbjct: 240 QCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKS 299
Query: 303 QFKERS 308
QFK RS
Sbjct: 300 QFKRRS 305
>pdb|2BP5|M Chain M, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Non-Canonical Internalization Peptide
Vedyeqglsg
pdb|2VGL|M Chain M, Ap2 Clathrin Adaptor Core
pdb|2JKR|M Chain M, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|U Chain U, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|M Chain M, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|U Chain U, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
Length = 435
Score = 253 bits (646), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 197/312 (63%), Gaps = 14/312 (4%)
Query: 6 SALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQH 65
LF+ + KG VLI R YR D+ + F I Q ++PV ++ ++
Sbjct: 3 GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKR 60
Query: 66 NNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGF 125
+N++L A ++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDEI+DFG+
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 126 PQFTEAKILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180
PQ +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+ES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 181 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST------KGK-A 233
VN+L++ GQ++ + V G + M++YLSGMPECK G+ND++++E QG+ T GK +
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQS 240
Query: 234 IDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSR 293
I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + + V + R++
Sbjct: 241 IAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTK 300
Query: 294 IEIMVKARSQFK 305
+E+ V +S FK
Sbjct: 301 LEVKVVIKSNFK 312
>pdb|2XA7|M Chain M, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 446
Score = 249 bits (636), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 197/323 (60%), Gaps = 25/323 (7%)
Query: 6 SALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQH 65
LF+ + KG VLI R YR D+ + F I Q ++PV ++ ++
Sbjct: 3 GGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIH--ARQQVRSPVTNIARTSFFHVKR 60
Query: 66 NNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGF 125
+N++L A ++QN NAA + FL+++ DV YF ++ EE++++NFV++YELLDEI+DFG+
Sbjct: 61 SNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGY 120
Query: 126 PQFTEAKILSEFI-----KTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVES 180
PQ +E L FI K+ E + VT + WR EGI+Y++NE+FLDV+ES
Sbjct: 121 PQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLES 180
Query: 181 VNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTK---------- 230
VN+L++ GQ++ + V G + M++YLSGMPECK G+ND++++E QG+ T
Sbjct: 181 VNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSMEQK 240
Query: 231 -------GK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWV 282
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + + V
Sbjct: 241 LISEEDLGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 300
Query: 283 EAQIERHSRSRIEIMVKARSQFK 305
+ R+++E+ V +S FK
Sbjct: 301 IPLVREVGRTKLEVKVVIKSNFK 323
>pdb|4EN2|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EN2|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 234 bits (598), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 104/149 (69%), Positives = 134/149 (89%), Gaps = 1/149 (0%)
Query: 160 SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDR 219
SWRSEGI+Y+KNEVFLDV+E+VN+LV++NG ++RS++VG++KMR +LSGMPE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDK 60
Query: 220 VLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPL 279
VL + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+LM+YRL+T VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPL 119
Query: 280 IWVEAQIERHSRSRIEIMVKARSQFKERS 308
IW+E+ IE+HS SRIE MVKA+SQFK RS
Sbjct: 120 IWIESVIEKHSHSRIEYMVKAKSQFKRRS 148
>pdb|4EMZ|A Chain A, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
pdb|4EMZ|M Chain M, Hiv-1 Nef In Complex With Mhc-I Cytoplasmic Domain And Mu1
Adaptin Subunit Of Ap1 Adaptor (Second Domain)
Length = 266
Score = 224 bits (572), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 100/149 (67%), Positives = 130/149 (87%), Gaps = 1/149 (0%)
Query: 160 SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDR 219
SWRSEGI+Y+KNEVFLDV+E+VN+LV++NG ++RS++VG++K R +LSG PE +LGLND+
Sbjct: 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKXRVFLSGXPELRLGLNDK 60
Query: 220 VLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPL 279
VL + GR K K+++L+D+KFHQCVRL+RFENDRTISFIPPDG F+L +YRL+T VKPL
Sbjct: 61 VLFDNTGRG-KSKSVELEDVKFHQCVRLSRFENDRTISFIPPDGEFELXSYRLNTHVKPL 119
Query: 280 IWVEAQIERHSRSRIEIMVKARSQFKERS 308
IW+E+ IE+HS SRIE VKA+SQFK RS
Sbjct: 120 IWIESVIEKHSHSRIEYXVKAKSQFKRRS 148
>pdb|1I31|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Clathrin Adaptor,
Complexed With Egfr Internalization Peptide Fyralm At
2.5 A Resolution
Length = 314
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 119/180 (66%), Gaps = 7/180 (3%)
Query: 133 ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIV 192
I + IK+ E + VT + WR EGI+Y++NE+FLDV+ESVN+L++ GQ++
Sbjct: 12 ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVL 71
Query: 193 RSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST------KGK-AIDLDDIKFHQCV 245
+ V G + M++YLSGMPECK G+ND++++E QG+ T GK +I +DD FHQCV
Sbjct: 72 SAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCV 131
Query: 246 RLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFK 305
RL++F+++R+ISFIPPDG F+LM YR + + V + R+++E+ V +S FK
Sbjct: 132 RLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 191
>pdb|1BW8|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Egfr Internalization Peptide Fyralm
Length = 321
Score = 162 bits (410), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 78/180 (43%), Positives = 119/180 (66%), Gaps = 7/180 (3%)
Query: 133 ILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIV 192
I + IK+ E + VT + WR EGI+Y++NE+FLDV+ESVN+L++ GQ++
Sbjct: 19 ITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVL 78
Query: 193 RSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST------KGK-AIDLDDIKFHQCV 245
+ V G + M++YLSGMPECK G+ND++++E QG+ T GK +I +DD FHQCV
Sbjct: 79 SAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCV 138
Query: 246 RLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFK 305
RL++F+++R+ISFIPPDG F+LM YR + + V + R+++E+ V +S FK
Sbjct: 139 RLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 198
>pdb|1BXX|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Tgn38 Internalization Peptide Dyqrln
pdb|1HES|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With P-Selectin Internalization Peptide
Shlgtygvftnaa
Length = 285
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 72/154 (46%), Positives = 110/154 (71%), Gaps = 7/154 (4%)
Query: 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLND 218
+ WR EGI+Y++NE+FLDV+ESVN+L++ GQ++ + V G + M++YLSGMPECK G+ND
Sbjct: 9 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMND 68
Query: 219 RVLLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYR 271
++++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR
Sbjct: 69 KIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYR 128
Query: 272 LSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFK 305
+ + V + R+++E+ V +S FK
Sbjct: 129 TTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 162
>pdb|2PR9|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Gabaa Receptor-Gamma2 Subunit-Derived
Internalization Peptide Deeygyecl
pdb|3H85|A Chain A, Molecular Basis For The Association Of Pipki Gamma-P90
With The Clathrin Adaptor Ap-2
Length = 299
Score = 158 bits (399), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 111/161 (68%), Gaps = 7/161 (4%)
Query: 152 PMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPE 211
P + WR EGI+Y++NE+FLDV+ESVN+L++ GQ++ + V G + M++YLSGMPE
Sbjct: 16 PRGSHMQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPE 75
Query: 212 CKLGLNDRVLLEAQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGS 264
CK G+ND++++E QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG
Sbjct: 76 CKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGE 135
Query: 265 FDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFK 305
F+LM YR + + V + R+++E+ V +S FK
Sbjct: 136 FELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFK 176
>pdb|1H6E|A Chain A, Mu2 Adaptin Subunit (Ap50) Of Ap2 Adaptor (Second Domain),
Complexed With Ctla-4 Internalization Peptide
Ttgvyvkmppt
Length = 288
Score = 151 bits (382), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 107/149 (71%), Gaps = 7/149 (4%)
Query: 164 EGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLE 223
EGI+Y++NE+FLDV+ESVN+L++ GQ++ + V G + M++YLSGMPECK G+ND++++E
Sbjct: 17 EGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIE 76
Query: 224 AQGRST------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQV 276
QG+ T GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + +
Sbjct: 77 KQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDI 136
Query: 277 KPLIWVEAQIERHSRSRIEIMVKARSQFK 305
V + R+++E+ V +S FK
Sbjct: 137 ILPFRVIPLVREVGRTKLEVKVVIKSNFK 165
>pdb|3ML6|A Chain A, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|B Chain B, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|C Chain C, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|D Chain D, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|E Chain E, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
pdb|3ML6|F Chain F, A Complex Between Dishevlled2 And Clathrin Adaptor Ap-2
Length = 385
Score = 141 bits (356), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/143 (46%), Positives = 101/143 (70%), Gaps = 7/143 (4%)
Query: 170 KNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST 229
+NE+FLDV+ESVN+L++ GQ++ + V G + M++YLSGMPECK G+ND++++E QG+ T
Sbjct: 120 RNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGT 179
Query: 230 ------KGK-AIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWV 282
GK +I +DD FHQCVRL++F+++R+ISFIPPDG F+LM YR + + V
Sbjct: 180 ADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRV 239
Query: 283 EAQIERHSRSRIEIMVKARSQFK 305
+ R+++E+ V +S FK
Sbjct: 240 IPLVREVGRTKLEVKVVIKSNFK 262
>pdb|4IKN|A Chain A, Crystal Structure Of Adaptor Protein Complex 3 (ap-3) Mu3a
Subunit C- Terminal Domain, In Complex With A Sorting
Peptide From Tgn38
Length = 261
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 85/149 (57%), Gaps = 21/149 (14%)
Query: 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLG-LN 217
+ WR G++Y NE + DVVE ++ +++ +G V +++ G + LSGMP+ L +N
Sbjct: 8 IPWRRAGVKYTNNEAYFDVVEEIDAIIDKSGSTVFAEIQGVIDACIKLSGMPDLSLSFMN 67
Query: 218 DRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQ-- 275
R+L DD+ FH C+R R+E++R +SFIPPDG+F L++YR+S+Q
Sbjct: 68 PRLL---------------DDVSFHPCIRFKRWESERVLSFIPPDGNFRLISYRVSSQNL 112
Query: 276 VKPLIWVEAQI---ERHSRSRIEIMVKAR 301
V ++V+ I E S R +I + +
Sbjct: 113 VAIPVYVKHNISFKENSSCGRFDITIGPK 141
>pdb|3L81|A Chain A, Crystal Structure Of Adaptor Protein Complex 4 (Ap-4) Mu4
Su Terminal Domain, In Complex With A Sorting Peptide
From The Precursor Protein (App)
Length = 301
Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 93/177 (52%), Gaps = 13/177 (7%)
Query: 136 EFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSD 195
EF ++ RP +S RS+ + +KNEVFLDVVE +++L+ SNG +++ D
Sbjct: 6 EFQQSKVAPSSAASRP------VLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVD 57
Query: 196 VVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFENDRT 255
V G ++++++L E ++GL + + G I +D++ FH V L FE+ R
Sbjct: 58 VQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRGYGPGIRVDEVSFHSSVNLDEFESHRI 117
Query: 256 ISFIPPDGSFDLMTYRLSTQV-KPL---IWVEAQIERHSRSRIEIMVKARSQFKERS 308
+ PP G +M Y+LS + PL ++ Q +R S R+++ +K R +S
Sbjct: 118 LRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGS-GRLQVYLKLRCDLLSKS 173
>pdb|1WQL|B Chain B, Cumene Dioxygenase (Cuma1a2) From Pseudomonas Fluorescens
Ip01
Length = 186
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 233 AIDLDDIKFHQCVRLARFENDRTISFIPPDG------SFDLMTYRLSTQVKPLIWVEAQI 286
A+ DI++ +R ++ + ++PP G +++ M R+ +V L W E
Sbjct: 46 ALLTQDIQYWMPIRTTHTSRNKAMEYVPPGGNAHFDETYESMRARIRARVSGLNWTE--- 102
Query: 287 ERHSRSR 293
+ SRSR
Sbjct: 103 DPPSRSR 109
>pdb|2VGL|S Chain S, Ap2 Clathrin Adaptor Core
pdb|2JKR|I Chain I, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKR|S Chain S, Ap2 Clathrin Adaptor Core With Dileucine Peptide Rm(
Phosphos)qikrllse
pdb|2JKT|I Chain I, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2JKT|S Chain S, Ap2 Clathrin Adaptor Core With Cd4 Dileucine Peptide Rm(
Phosphos)eikrllse Q To E Mutant
pdb|2XA7|S Chain S, Ap2 Clathrin Adaptor Core In Active Complex With Cargo
Peptides
Length = 142
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 45 DPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVADVFKHYFEELEEE 104
D + N V F N ++ ++ +Y N N + L +H +V YF + E
Sbjct: 43 DAKHTNFVEFRN-FKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCEL 101
Query: 105 SLRDNFVVVYELLDEIMDFG-FPQFTEAKILSEFI 138
L NF VY ++DE+ G + ++ K+L + +
Sbjct: 102 DLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLL 136
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 16/117 (13%)
Query: 84 LLFLHRVADVFKH----YFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIK 139
LL D+ H FE LE+ L N L+D ++FG T+ +L++ I
Sbjct: 155 LLIGQTEVDIXSHATQAIFEILEKSWLPQNCT----LVDXKIEFGVDVTTKEIVLADVID 210
Query: 140 TDAYRMEVT-----QRPPMAVTNAVSWRSEGIR-YKKNEVFLDVVESVNILVNSNGQ 190
D++R+ + Q+ + + EG++ KKN F V E V +L+ S Q
Sbjct: 211 NDSWRLWPSGDRSQQKDKQSYRDLKEVTPEGLQXVKKN--FEWVAERVELLLKSESQ 265
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,783,280
Number of Sequences: 62578
Number of extensions: 338952
Number of successful extensions: 725
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 688
Number of HSP's gapped (non-prelim): 21
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)