Query 021018
Match_columns 318
No_of_seqs 148 out of 1190
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 11:32:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021018.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021018hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vgl_M AP-2 complex subunit MU 100.0 3.4E-73 1.2E-77 556.7 36.8 308 4-313 1-320 (435)
2 1w63_M Adaptor-related protein 100.0 1.5E-73 5E-78 557.5 29.1 309 3-313 1-310 (423)
3 1i31_A Clathrin coat assembly 100.0 1.7E-45 5.9E-50 346.0 19.0 187 127-313 1-199 (314)
4 4en2_M AP-1 complex subunit MU 100.0 2E-40 6.8E-45 304.5 16.2 153 160-313 1-153 (266)
5 3ml6_A Chimeric complex betwee 100.0 9.9E-40 3.4E-44 313.9 19.6 196 113-313 61-270 (385)
6 3l81_A AP-4 complex subunit MU 100.0 5.4E-40 1.9E-44 306.4 16.7 161 151-313 14-178 (301)
7 1w63_Q Adapter-related protein 100.0 2E-33 6.9E-38 239.0 17.2 140 4-146 1-143 (158)
8 2vgl_S AP-2 complex subunit si 100.0 2E-32 6.7E-37 229.0 15.9 136 4-142 1-140 (142)
9 3tjz_C Coatomer subunit zeta-1 100.0 5.8E-31 2E-35 222.4 17.3 134 3-142 11-150 (153)
10 2nut_C Vesicle-trafficking pro 94.5 0.75 2.6E-05 39.2 13.1 98 3-100 1-102 (196)
11 4b93_A Vesicle-associated memb 92.6 1.8 6E-05 36.7 12.1 84 13-100 10-93 (189)
12 2vx8_A Nucleoporin-like protei 92.0 1.2 4.3E-05 37.1 10.2 92 4-100 44-135 (169)
13 3bw6_A Synaptobrevin homolog Y 91.9 3.1 0.0001 33.6 12.3 97 1-99 3-110 (144)
14 3g9h_A Suppressor of yeast pro 91.8 7.2 0.00024 36.0 15.8 113 170-302 67-189 (328)
15 1nrj_A Signal recognition part 91.1 3.1 0.00011 33.6 11.0 73 4-76 1-93 (158)
16 3cue_A Transport protein parti 90.8 4.2 0.00014 35.3 12.5 25 3-27 1-25 (219)
17 4afi_A AP-3 complex subunit de 90.5 4 0.00014 34.1 11.9 84 13-100 62-145 (173)
18 3cpt_A Mitogen-activated prote 89.8 3.6 0.00012 33.3 10.4 91 5-96 38-135 (143)
19 2fh5_A Signal recognition part 88.3 4.3 0.00015 34.3 10.4 94 3-99 9-104 (185)
20 2j3t_C Trafficking protein par 87.8 2.9 9.8E-05 33.9 8.8 91 3-97 1-108 (145)
21 2j3w_A Sedlin, trafficking pro 86.2 8.7 0.0003 30.8 10.8 91 5-100 6-114 (142)
22 3kyq_A YKT6, synaptobrevin hom 82.5 13 0.00043 31.7 10.8 93 5-99 4-107 (199)
23 3cue_C Transport protein parti 75.6 7.9 0.00027 31.8 7.1 92 3-98 1-115 (159)
24 2j3t_D Trafficking protein par 26.2 50 0.0017 28.5 3.5 20 5-24 3-22 (219)
25 2wl8_A Peroxisomal biogenesis 24.9 1.1E+02 0.0037 24.0 4.9 42 84-127 65-108 (126)
No 1
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=100.00 E-value=3.4e-73 Score=556.72 Aligned_cols=308 Identities=39% Similarity=0.750 Sum_probs=266.4
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHH
Q 021018 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI 83 (318)
Q Consensus 4 MI~~i~Iln~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~l~~ 83 (318)
||+++||+|++|+++++|+|+++.++..++.|.+.+....+. ..+|+++.++++|+|+++++|||+++++.++||+++
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~--~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~ 78 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQ--VRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMV 78 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSCCHHHHHHHHHHTTTCSSC--CCCSEEEETTEEEEEEEETTEEEEEEESSCCCHHHH
T ss_pred CeEEEEEECCCCCEEEEEecCCCCChhHHHHHHHHHhccccC--CCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence 899999999999999999999988888889999998875422 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccccHHHHhhhHHHHHHHHHHHhcCCeeeeechhhHHHhhhcccccccc-----cCCCCCCccCC
Q 021018 84 LLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNA 158 (318)
Q Consensus 84 l~~L~~i~~~l~~y~~~l~e~~I~~N~~~v~~lLDE~id~G~p~~t~~~~L~~~I~~~~~~~~~-----~~~~~~~~~~~ 158 (318)
++|||+++++|++||++++|++|++||++||++||||+|+|+||+|+++.|++++.++++..+. .+.+|++++++
T Consensus 79 le~L~~~v~vl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (435)
T 2vgl_M 79 FEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQ 158 (435)
T ss_dssp HHHHHHHHHHHHHHHSSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999987643 12345566778
Q ss_pred CcCccCCCccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeEEEEeccchhhhhccCC-------CCC
Q 021018 159 VSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------TKG 231 (318)
Q Consensus 159 ~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~ 231 (318)
+|||+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++.+++. ...
T Consensus 159 i~wr~~gi~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~~~~ 238 (435)
T 2vgl_M 159 IGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGK 238 (435)
T ss_dssp CCSSCSCCCCSSCEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEECSSCCEEEEEECSSSCC----------------
T ss_pred cccccccCCcCcceEEEEEEEEEEEEEcCCCCEEEEEEEEEEEEEEEeCCCCeEEEEeCchhhccccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999998665433211 012
Q ss_pred cceeccccccccccccccccCCceEEeeCCCCceEEEEEEeecCCCCeEEEEEEEEEcCceEEEEEEEEeecCCCccccc
Q 021018 232 KAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSYFP 311 (318)
Q Consensus 232 ~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~~~a~ 311 (318)
.++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.+..+||.+.|+++..+++++|+.++++++|+++..|+
T Consensus 239 ~~~~l~d~~fH~cV~~~~f~~~r~isF~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~ 318 (435)
T 2vgl_M 239 QSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQ 318 (435)
T ss_dssp -CCCCCEEEECTTEEEC-----CCEEECCCSEEEEEEEEEECSSCCCSEEEEEEEECCTTTEEEEEEEEEECSCTTSEEE
T ss_pred CceEccccccceeecHhHhccCceEEEECCCCcEEEEEEEecCCcCCCeEEEEEEEecCCCEEEEEEEEeCCCCCCceee
Confidence 56789999999999999999999999999999999999999988899999999999877789999999999999887776
Q ss_pred cc
Q 021018 312 LQ 313 (318)
Q Consensus 312 ~~ 313 (318)
.+
T Consensus 319 ~V 320 (435)
T 2vgl_M 319 KI 320 (435)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 2
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=1.5e-73 Score=557.53 Aligned_cols=309 Identities=60% Similarity=1.042 Sum_probs=268.4
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHH
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAAS 82 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~l~ 82 (318)
|||+++||+|++|+++++|+|+++.++..++.|.+++..+.+. ...+|+++.++++|+|+++++|||+++++.++||++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~-~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~ 79 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEE-GMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSL 79 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHT-SCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHH
T ss_pred CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhcccc-CCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHH
Confidence 5999999999999999999999988887889999998865321 136899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccccHHHHhhhHHHHHHHHHHHhcCCeeeeechhhHHHhhhcccccccccC-CCCCCccCCCcC
Q 021018 83 ILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVTQ-RPPMAVTNAVSW 161 (318)
Q Consensus 83 ~l~~L~~i~~~l~~y~~~l~e~~I~~N~~~v~~lLDE~id~G~p~~t~~~~L~~~I~~~~~~~~~~~-~~~~~~~~~~~w 161 (318)
+++|||+++++|++||++++|++|++||++||++||||+|+|+||+|++++|+++|.++++.....+ .+|++.++++||
T Consensus 80 ~le~L~~~v~~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~i~w 159 (423)
T 1w63_M 80 VFSFLYKVVQVFSEYFKELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEGHKLETGAPRPPATVTNAVSW 159 (423)
T ss_dssp HHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCCCCCCCC-----------CCS
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCCccccccccCCcccccCCCCc
Confidence 9999999999999999999999999999999999999999999999999999999999988632222 344556778999
Q ss_pred ccCCCccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeEEEEeccchhhhhccCCCCCcceecccccc
Q 021018 162 RSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKF 241 (318)
Q Consensus 162 R~~~~~~~~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~~f 241 (318)
|+.|++|++|||||||+|+++++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||+|
T Consensus 160 r~~g~~~~~nei~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Ln~~~~~~~~~~-~~~~~v~l~d~~f 238 (423)
T 1w63_M 160 RSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDVKF 238 (423)
T ss_dssp SCSSCCCSSCEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEECSSCCEEEEEECSCC--------------CEEEEEE
T ss_pred cccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEEeCCCCeEEEEECCccccccccc-cccCceEcccccc
Confidence 999999999999999999999999999999999999999999999999999999999976654333 2345678999999
Q ss_pred ccccccccccCCceEEeeCCCCceEEEEEEeecCCCCeEEEEEEEEEcCceEEEEEEEEeecCCCccccccc
Q 021018 242 HQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSYFPLQ 313 (318)
Q Consensus 242 H~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~~~a~~~ 313 (318)
||||++++|+++|+|+|+||||+|+||+||++.+..|||.+.||++..+++++|+.++++++|+++..|+.+
T Consensus 239 HpcV~~~~f~~~r~isf~PPdg~F~Lm~Yr~~~~~~~P~~i~~~~~~~~~~~ve~~l~~~~~~~~~~~~~~V 310 (423)
T 1w63_M 239 HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNV 310 (423)
T ss_dssp CTTEEESSSSSCCEEEECCCSEEEEEEEEEEECCCCCTTCCEEEEEEETTTEEEEEEEEECCSCTTSEEESC
T ss_pred cccccHHHhCCCCeEEEECCCCcEEEEEEEecCCcCCCEEEEEEEEecCCCEEEEEEEEcccCCCcceeeEE
Confidence 999999999999999999999999999999998889999999999987778999999999999998777654
No 3
>1i31_A Clathrin coat assembly protein AP50; beta-sandwich, peptide-binding site, protein-peptide complex, clathrin adaptor; 2.50A {Rattus norvegicus} SCOP: b.2.7.1 PDB: 1bw8_A 2pr9_A 3h85_A 1bxx_A 1hes_A 1h6e_A
Probab=100.00 E-value=1.7e-45 Score=345.97 Aligned_cols=187 Identities=41% Similarity=0.776 Sum_probs=134.1
Q ss_pred eeechhhHHHhhhcccccccc-----cCCCCCCccCCCcCccCCCccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEE
Q 021018 127 QFTEAKILSEFIKTDAYRMEV-----TQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALK 201 (318)
Q Consensus 127 ~~t~~~~L~~~I~~~~~~~~~-----~~~~~~~~~~~~~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~ 201 (318)
|+|+++.||++|..+++..+. ...+|++.+++++||+.|++|++|||||||+|+|+++++++|.+++++|.|.|.
T Consensus 1 q~te~~~Lk~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~WR~~gi~y~~NEi~vdV~E~v~~~i~~~G~v~~~eV~G~I~ 80 (314)
T 1i31_A 1 QNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQVLSAHVSGRVV 80 (314)
T ss_dssp -------------------------------------CTTSCSCCCCSSCEEEEEEEEEEEEEECSSCCEEEEEEEEEEE
T ss_pred CcCChHHHHHhhcCCCeeccccccccccCCCccccCCCCCCccCCccccceEEEEEEEEEEEEECCCCCEEEEEEEEEEE
Confidence 689999999999999876532 224566778899999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCeEEEEeccchhhhhccCC-------CCCcceeccccccccccccccccCCceEEeeCCCCceEEEEEEeec
Q 021018 202 MRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLST 274 (318)
Q Consensus 202 ~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~ 274 (318)
|+|+|+|||+|+|+||++..++.+++. ....++.|+||+|||||++++|+++|+|+|+||||+|+||+||++.
T Consensus 81 ~~~~LsG~P~l~l~Ln~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~FHpcV~l~~f~~~r~IsFiPPDG~F~Lm~Yr~~~ 160 (314)
T 1i31_A 81 MKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISFIPPDGEFELMRYRTTK 160 (314)
T ss_dssp EEEECSSSCEEEEEESCCC-----------------CCCCCCSEEEECTTSBCC----CCCEEECCCSEEEEEEEEEECS
T ss_pred EEEEcCCCCeEEEEECCchhccccccccccccccccCCceEcccccccccccHHHcCCcceEEEECCCCCeEEEEEEecC
Confidence 999999999999999998766543321 1135678999999999999999999999999999999999999998
Q ss_pred CCCCeEEEEEEEEEcCceEEEEEEEEeecCCCccccccc
Q 021018 275 QVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSYFPLQ 313 (318)
Q Consensus 275 ~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~~~a~~~ 313 (318)
+..+||.+.|+++..+++++|+.++++++|+++..|+.+
T Consensus 161 ~~~lP~~v~~~~~~~g~~~iE~~l~~~~~~~~~~~~~nV 199 (314)
T 1i31_A 161 DIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKI 199 (314)
T ss_dssp SCCCCEEEEEEEEEETTTEEEEEEEEEECSCTTCEEEEE
T ss_pred CcCCCEEEEEEEEecCCcEEEEEEEEccCCCCcceeeEE
Confidence 889999999999987778999999999999998877654
No 4
>4en2_M AP-1 complex subunit MU-1; human immunodeficiency virus 1, HIV, NEF, antigen presentation, HOST defense, adaptor protein complex 1, MU1 subunit; 2.58A {Mus musculus} PDB: 4emz_A
Probab=100.00 E-value=2e-40 Score=304.51 Aligned_cols=153 Identities=68% Similarity=1.175 Sum_probs=141.9
Q ss_pred cCccCCCccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeEEEEeccchhhhhccCCCCCcceecccc
Q 021018 160 SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDI 239 (318)
Q Consensus 160 ~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~ 239 (318)
+||++|++|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++ +...++.++||
T Consensus 1 ~WR~~~i~y~~nei~vdV~E~v~~~~~~~G~v~~~~v~G~i~~~~~lsG~p~~~l~ln~~~~~~~~~~-~~~~~~~l~d~ 79 (266)
T 4en2_M 1 SWRSEGIKYRKNEVFLDVIEAVNLLVSANGNVLRSEIVGSIKMRVFLSGMPELRLGLNDKVLFDNTGR-GKSKSVELEDV 79 (266)
T ss_dssp CCCCTTCCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEEECCSCCEEEEEECBHHHHHHTTC-TTSCCBCCEEE
T ss_pred CCcCCCCccccCeEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEECCCCCEEEEEEcCccccccccc-cccCccCcccc
Confidence 69999999999999999999999999999999999999999999999999999999999987665543 23467889999
Q ss_pred ccccccccccccCCceEEeeCCCCceEEEEEEeecCCCCeEEEEEEEEEcCceEEEEEEEEeecCCCccccccc
Q 021018 240 KFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSYFPLQ 313 (318)
Q Consensus 240 ~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~~~a~~~ 313 (318)
+|||||++++|+++|.|+|+||||+|+||+||++.+..|||.+.|+++..+.+++++.++++++|+++..|+.+
T Consensus 80 ~fH~cV~~~~f~~~r~i~f~PPdg~F~Lm~yr~~~~~~~Pi~i~~~~~~~~~~~vei~v~~k~~~~~~~~~~nV 153 (266)
T 4en2_M 80 KFHQCVRLSRFENDRTISFIPPDGEFELMSYRLNTHVKPLIWIESVIEKHSHSRIEYMVKAKSQFKRRSTANNV 153 (266)
T ss_dssp EECTTBCHHHHHHHCCCEECCCSEEEEEEEEEECCCCCCSEEEEEEEEEEETTEEEEEEEEEECBCTTCEEEEE
T ss_pred ccccccCHhHccccceEEEeCCCCceEEEEEEecCCCCCCEEEEEEEecCCCEEEEEEEEEecCCCCCcEEEEE
Confidence 99999999999999999999999999999999998889999999999987778999999999999998887764
No 5
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=100.00 E-value=9.9e-40 Score=313.93 Aligned_cols=196 Identities=36% Similarity=0.653 Sum_probs=150.9
Q ss_pred HHHHHHHHhcCCeeeeechhhHHHhhhccccccccc---CCCCCCccCCC-cC---ccCCCccccceEEEEEEEeEEEEE
Q 021018 113 VYELLDEIMDFGFPQFTEAKILSEFIKTDAYRMEVT---QRPPMAVTNAV-SW---RSEGIRYKKNEVFLDVVESVNILV 185 (318)
Q Consensus 113 v~~lLDE~id~G~p~~t~~~~L~~~I~~~~~~~~~~---~~~~~~~~~~~-~w---R~~~~~~~~nei~vdv~E~i~~~~ 185 (318)
...+-..+++.|+.+-..-.. .|.. ... -.. ...|...++++ || |+.|++|++|||||||+|+|++++
T Consensus 61 A~~~g~~Ll~~G~i~hv~~~~--~F~d--~~~-y~f~~~~~~~~~~s~~~~~~~~~~~~gi~y~knEi~vdV~E~v~~~~ 135 (385)
T 3ml6_A 61 ARKYASGLLKAGLIRHTVNKI--TFSE--QCY-YVFGDLSGGPRPYSPQPPPYHELEFGGSGGSRNELFLDVLESVNLLM 135 (385)
T ss_dssp HHHHHHHHHHHSSEEESSSCS--SCCS--SSE-EEECCCCC------CCCCCCEEBCSSSBCCCCCEEEEEEEEEEEEEE
T ss_pred HHHHHHHHHhCCcEEEcCCcc--eecC--cce-EEeeccccccCccCCCCCCchhccccCCccccceEEEEEEEEEEEEE
Confidence 345667778889988765221 0110 000 000 02233334455 99 789999999999999999999999
Q ss_pred ccCCcEEEEEEEEEEEEEEeeCCCCeEEEEeccchhhhhccCC-------CCCcceeccccccccccccccccCCceEEe
Q 021018 186 NSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRS-------TKGKAIDLDDIKFHQCVRLARFENDRTISF 258 (318)
Q Consensus 186 ~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~-------~~~~~~~l~~~~fH~cV~~~~f~~~~~i~F 258 (318)
+++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..++. +.+.++.|+||+|||||++++|+++|+|+|
T Consensus 136 ~~~G~v~~~eV~G~I~~k~~LsG~P~~~l~LNd~~~~~~~~~~~~~~~~~~~~~~i~l~d~~FH~CV~l~~f~~~r~IsF 215 (385)
T 3ml6_A 136 SPQGQVLSAHVSGRVVMKSYLSGMPECKFGMNDKIVIEKQGKGTADETSKSGKQSIAIDDCTFHQCVRLSKFDSERSISF 215 (385)
T ss_dssp CTTSCEEEEEEEEEEEEEEECSSCCEEEEEECC----------------------CCCCEEEECTTBCCCCSSSCSEEEE
T ss_pred CCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEcCccccccccccccccccccccCceEccccccccccChhHccccceEEE
Confidence 9999999999999999999999999999999998766543321 123568899999999999999999999999
Q ss_pred eCCCCceEEEEEEeecCCCCeEEEEEEEEEcCceEEEEEEEEeecCCCccccccc
Q 021018 259 IPPDGSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARSQFKERSYFPLQ 313 (318)
Q Consensus 259 ~PPdg~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~~~~~~~~a~~~ 313 (318)
+||||+|+||+||++.+..+||.+.|+++..+.+++++.++++++|++++.|+.+
T Consensus 216 iPPDg~F~Lm~Yr~~~~~~~Pf~i~~~v~~~~~~~vei~v~lk~~f~~~~~~~nV 270 (385)
T 3ml6_A 216 IPPDGEFELMRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKI 270 (385)
T ss_dssp CCCSEEEEEEEEEECSSCCCSEEEEEEEEEETTTEEEEEEEEEECSCTTCCEEEE
T ss_pred eCCCCceEEEEEEcCCCCCCCEEEEEEEEeCCCeEEEEEEEEeecCCCcceEEEE
Confidence 9999999999999988889999999999998888999999999999999988765
No 6
>3l81_A AP-4 complex subunit MU-1; immunoglobulin-like beta-sandwich, coated PIT, golgi apparat membrane, phosphoprotein, protein transport, transport; 1.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-40 Score=306.36 Aligned_cols=161 Identities=30% Similarity=0.551 Sum_probs=131.7
Q ss_pred CCCCccCCC-cCccCCCccccceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCCCeEEEEeccchhhhhccCCC
Q 021018 151 PPMAVTNAV-SWRSEGIRYKKNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRST 229 (318)
Q Consensus 151 ~~~~~~~~~-~wR~~~~~~~~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~P~~~l~ln~~~~~~~~~~~~ 229 (318)
++.++++++ +||+. +|++|||||||+|+|+++++++|.+++++|.|+|.|+|+|+|+|+|+|+||++..++..+...
T Consensus 14 ~~~a~~~pv~~wr~~--~~~knEi~vdV~E~v~~~~~~~G~v~~~eV~G~I~~~~~LsG~P~~~l~Lnd~~~~~~~~~~~ 91 (301)
T 3l81_A 14 PSSAASRPVLSSRSD--QSQKNEVFLDVVERLSVLIASNGSLLKVDVQGEIRLKSFLPSGSEMRIGLTEEFSVGKSELRG 91 (301)
T ss_dssp ---------------------CEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCTTCEEEEEECSSCEESCCTTTC
T ss_pred CchhhcCcccccccc--cCCcceEEEEEEEEEEEEECCCCCEEEEEEEEEEEEEEeCCCCCeEEEEEccccccccccccc
Confidence 344555665 99984 899999999999999999999999999999999999999999999999999998776655444
Q ss_pred CCcceeccccccccccccccccCCceEEeeCCCCceEEEEEEeecCC--CCeEEEEEEEEEcCc-eEEEEEEEEeecCCC
Q 021018 230 KGKAIDLDDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQV--KPLIWVEAQIERHSR-SRIEIMVKARSQFKE 306 (318)
Q Consensus 230 ~~~~~~l~~~~fH~cV~~~~f~~~~~i~F~PPdg~f~Lm~Y~~~~~~--~~P~~v~~~~~~~~~-~~~~~~i~l~~~~~~ 306 (318)
...++.|+||+|||||++++|+++|.|+|+||||+|+||+||++.+. .+||.+.|+++..++ +++|+.++++++|++
T Consensus 92 ~~~~~~l~d~~fH~cV~~~~f~~~r~IsFiPPDg~F~Lm~Yr~~~~~~~~~P~~v~~~v~~~~~~~~ie~~l~l~~~f~~ 171 (301)
T 3l81_A 92 YGPGIRVDEVSFHSSVNLDEFESHRILRLQPPQGELTVMRYQLSDDLPSPLPFRLFPSVQWDRGSGRLQVYLKLRCDLLS 171 (301)
T ss_dssp CCSSSEESEEEEETTCBCTTHHHHCEEEECCCSEEEEEEEEEECSCCSSCCSEEEEEEEEECTTTSEEEEEEEEEECSCT
T ss_pred ccCceEccccccccccChhHccccceEEecCCCCeeEEEEEEecCCCccCCCEEEEEEEEECCCcEEEEEEEEEecCCCC
Confidence 45678899999999999999999999999999999999999998764 799999999999765 799999999999999
Q ss_pred ccccccc
Q 021018 307 RSYFPLQ 313 (318)
Q Consensus 307 ~~~a~~~ 313 (318)
+..|+.+
T Consensus 172 ~~~~~nV 178 (301)
T 3l81_A 172 KSQALNV 178 (301)
T ss_dssp TCEEEEE
T ss_pred CcEEEEE
Confidence 9888765
No 7
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=100.00 E-value=2e-33 Score=239.03 Aligned_cols=140 Identities=17% Similarity=0.215 Sum_probs=129.2
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCCh---HHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 021018 4 AASALFLLDIKGRVLIWRDYRGDVSA---IQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (318)
Q Consensus 4 MI~~i~Iln~~G~~ll~r~y~~~~~~---~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~ 80 (318)
||++++|+|++|+++++|||+++.++ ...+.|++.+..+++ ..+|+++.++++|+|+++++|||+++++.++||
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~Ne 77 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKP---KMCSFLEWRDLKVVYKRYASLYFCCAIEGQDNE 77 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHTSCS---SSCSEEEETTEEEEEEEETTEEEEEEECSSSCH
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhccCC---CCCCeEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence 89999999999999999999987665 466788887776532 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccHHHHhhhHHHHHHHHHHHhcCCeeeeechhhHHHhhhccccccc
Q 021018 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDAYRME 146 (318)
Q Consensus 81 l~~l~~L~~i~~~l~~y~~~l~e~~I~~N~~~v~~lLDE~id~G~p~~t~~~~L~~~I~~~~~~~~ 146 (318)
++++++||+++++|++|||+++|++|++||+++|++||||+|+|+||+|+++.|+++|.+++...+
T Consensus 78 l~~le~L~~~vevl~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~~~l~~ 143 (158)
T 1w63_Q 78 LITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQADLLQE 143 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcchhhhh
Confidence 999999999999999999999999999999999999999999999999999999999999876543
No 8
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=100.00 E-value=2e-32 Score=229.03 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=123.2
Q ss_pred ceeEEEEEcCCCCEEEEEccCCC---CChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCH
Q 021018 4 AASALFLLDIKGRVLIWRDYRGD---VSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNA 80 (318)
Q Consensus 4 MI~~i~Iln~~G~~ll~r~y~~~---~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~ 80 (318)
||++++|+|++|+++++|||++. ..++..+.|++.+..+++ ..+|+++.++++++|+++++|||+++++.++||
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~~~~---~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~ 77 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDA---KHTNFVEFRNFKIIYRRYAGLYFCICVDVNDNN 77 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHTCCT---TSCSEEEETTEEEEEEEETTEEEEEEECTTSCH
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhcCCC---CCCCEEEECCEEEEEEEECCEEEEEEeCCCCCH
Confidence 89999999999999999999942 224577889999886532 368999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccHHHHhhhHHHHHHHHHHHhcCCeeeeec-hhhHHHhhhccc
Q 021018 81 ASILLFLHRVADVFKHYFEELEEESLRDNFVVVYELLDEIMDFGFPQFTE-AKILSEFIKTDA 142 (318)
Q Consensus 81 l~~l~~L~~i~~~l~~y~~~l~e~~I~~N~~~v~~lLDE~id~G~p~~t~-~~~L~~~I~~~~ 142 (318)
++++++||+++++|++|||+++|++|++||+++|++||||+|+|+||+|+ .+.|+.++.++.
T Consensus 78 l~~le~L~~~ve~l~~yf~~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~~~~ 140 (142)
T 2vgl_S 78 LAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLMLQS 140 (142)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999995 677888887653
No 9
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=99.97 E-value=5.8e-31 Score=222.36 Aligned_cols=134 Identities=18% Similarity=0.286 Sum_probs=116.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC-C---hHHHH-HHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCC
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGDV-S---AIQAE-RFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQN 77 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~~-~---~~~~~-~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~ 77 (318)
.||++++|+|++|+++++|||+++. + +...+ .+++++. + ..+|++.++++.++|+++++|||+++++.+
T Consensus 11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~-r-----~~~~i~~~~~~~~vy~~~~~Lyfv~~~~~~ 84 (153)
T 3tjz_C 11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH-R-----TDSEIALLEGLTVVYKSSIDLYFYVIGSSY 84 (153)
T ss_dssp BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS-S-----CCCCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh-C-----CCCCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence 3999999999999999999999864 3 22233 4555542 2 136999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHh-ccccHHHHhhhHHHHHHHHHHHhcCCeeeeechhhHHHhhhccc
Q 021018 78 CNAASILLFLHRVADVFKHYF-EELEEESLRDNFVVVYELLDEIMDFGFPQFTEAKILSEFIKTDA 142 (318)
Q Consensus 78 ~n~l~~l~~L~~i~~~l~~y~-~~l~e~~I~~N~~~v~~lLDE~id~G~p~~t~~~~L~~~I~~~~ 142 (318)
+||++++++||+++++|+.|| ++++|++|++||+++|++||||+|+|+||+|+++.+.+++...+
T Consensus 85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~ 150 (153)
T 3tjz_C 85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRG 150 (153)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC----
T ss_pred CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhccc
Confidence 999999999999999999999 88999999999999999999999999999999999999988754
No 10
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=94.48 E-value=0.75 Score=39.17 Aligned_cols=98 Identities=9% Similarity=0.110 Sum_probs=62.8
Q ss_pred cceeEEEEEcC-CCCEEEEEccCCCC---ChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCC
Q 021018 3 GAASALFLLDI-KGRVLIWRDYRGDV---SAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNC 78 (318)
Q Consensus 3 ~MI~~i~Iln~-~G~~ll~r~y~~~~---~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~ 78 (318)
+||....|.-. +|.+|.+..-.+.. .+.....+.+.+..+-..+....--+..+++.|.|...+++.++|+++.+-
T Consensus 1 ~Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~y 80 (196)
T 2nut_C 1 SMVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAF 80 (196)
T ss_dssp -CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTS
T ss_pred CceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCc
Confidence 47776667654 56666664321111 122344455555543211111112566789999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhcc
Q 021018 79 NAASILLFLHRVADVFKHYFEE 100 (318)
Q Consensus 79 n~l~~l~~L~~i~~~l~~y~~~ 100 (318)
+.-.++.||..+.+-...-++.
T Consensus 81 p~r~af~fL~~i~~~F~~~~~~ 102 (196)
T 2nut_C 81 PKKLAFAYLEDLHSEFDEQHGK 102 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhccc
Confidence 9999999999998877665553
No 11
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=92.58 E-value=1.8 Score=36.73 Aligned_cols=84 Identities=8% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 021018 13 IKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVAD 92 (318)
Q Consensus 13 ~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~l~~l~~L~~i~~ 92 (318)
.+|.++++.+-.. . .-...+-+.++.+-... ...-.+..+++.|.|...+++.++|+++.+-+--.++.||..+.+
T Consensus 10 Arg~~iLae~t~~--~-gnf~~ia~~iL~kip~~-~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i~~ 85 (189)
T 4b93_A 10 ARGTTILAKHAWC--G-GNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 85 (189)
T ss_dssp EETTEEEEEEESS--E-ECHHHHHHHHHTTCCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred EeCCEEEEeCCCC--C-CCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHHHH
Confidence 3688888865322 1 11233444444432111 111256789999999999999999999999999999999999988
Q ss_pred HHHHHhcc
Q 021018 93 VFKHYFEE 100 (318)
Q Consensus 93 ~l~~y~~~ 100 (318)
-...-++.
T Consensus 86 eF~~~~~~ 93 (189)
T 4b93_A 86 RFQTTYGS 93 (189)
T ss_dssp HHHHHHGG
T ss_pred HHHhhccc
Confidence 87766664
No 12
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=92.01 E-value=1.2 Score=37.12 Aligned_cols=92 Identities=9% Similarity=0.173 Sum_probs=60.5
Q ss_pred ceeEEEEEcCCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHH
Q 021018 4 AASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASI 83 (318)
Q Consensus 4 MI~~i~Iln~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~l~~ 83 (318)
|.....++. +|.++++.+-.... ......+.++.+-..+ ...--+..++..|-|...+++.|+|+++.+-+-..+
T Consensus 44 M~ilYa~Va-RG~~VLae~t~~~g---nf~~iak~ll~kl~~~-~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~A 118 (169)
T 2vx8_A 44 MAILFAVVA-RGTTILAKHAWCGG---NFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRA 118 (169)
T ss_dssp SCCCEEEEE-ETTEEEEEEESSCB---SHHHHHHHHHTTSCSS-CEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHH
T ss_pred CceEEEEEE-cCCEEEEEeccCCC---CHHHHHHHHHhhCCCC-CCceEEEECCEEEEEEEECCEEEEEEEccccchHHH
Confidence 544444454 46666665422211 2233444444432111 112356789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 021018 84 LLFLHRVADVFKHYFEE 100 (318)
Q Consensus 84 l~~L~~i~~~l~~y~~~ 100 (318)
+.||.++.+-...-++.
T Consensus 119 F~fLedI~~eF~~~y~~ 135 (169)
T 2vx8_A 119 FSFLNEVKKRFQTTYGS 135 (169)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999999888776664
No 13
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=91.92 E-value=3.1 Score=33.61 Aligned_cols=97 Identities=8% Similarity=0.045 Sum_probs=62.2
Q ss_pred CccceeEEEEEcCCC--CEEEEEccCC-C---CChHHHHHH----HHHhhcccCCCCCCCCEEEeCCEEEEEE-EeCCEE
Q 021018 1 MAGAASALFLLDIKG--RVLIWRDYRG-D---VSAIQAERF----FTKFIEKEGDPQSQNPVVFDNGVTYMFI-QHNNVY 69 (318)
Q Consensus 1 ~~~MI~~i~Iln~~G--~~ll~r~y~~-~---~~~~~~~~f----~~~i~~~~~~~~~~~pvi~~~~~~~v~~-~~~~ly 69 (318)
|+|=|-++.|+-..+ -++++..+.- . ..|....+| -+.+..+...+ .---++.++..+.|. +.+++.
T Consensus 3 ~~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~~--~R~sv~~~~y~fH~~~~~~gl~ 80 (144)
T 3bw6_A 3 MAMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAG--QRQSIEEGNYIGHVYARSEGIC 80 (144)
T ss_dssp CCCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCTT--EEEEEEETTEEEEEEECTTSEE
T ss_pred cEEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCCC--ceEEEEeCCEEEEEEEecCCEE
Confidence 667777887775432 4566655532 1 124334433 34444433211 112566788888887 779999
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHHHHHHhc
Q 021018 70 LMAASRQNCNAASILLFLHRVADVFKHYFE 99 (318)
Q Consensus 70 ~v~v~~~~~n~l~~l~~L~~i~~~l~~y~~ 99 (318)
++|+++.+-+--.++.||+.+.+-...-++
T Consensus 81 ~l~i~D~~yp~rvAF~~L~~i~~eF~~~y~ 110 (144)
T 3bw6_A 81 GVLITDKEYPVRPAYTLLNKILDEYLVAHP 110 (144)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHHHcc
Confidence 999999999999999999988776655444
No 14
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=91.76 E-value=7.2 Score=35.95 Aligned_cols=113 Identities=13% Similarity=0.206 Sum_probs=66.9
Q ss_pred cceEEEEEEEeEEEEEccCCcEEEEEEEEEEEEEEeeCCC-------CeEEEEeccchhhhhccCCCCCcceeccccccc
Q 021018 170 KNEVFLDVVESVNILVNSNGQIVRSDVVGALKMRTYLSGM-------PECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFH 242 (318)
Q Consensus 170 ~nei~vdv~E~i~~~~~~~G~v~~~~v~G~i~~~s~LsG~-------P~~~l~ln~~~~~~~~~~~~~~~~~~l~~~~fH 242 (318)
.-++-..|.|.|||.+.. |.+.++.|.|.|.+ +|..|. +.+.+.|++-..++.-.+ +-+|-
T Consensus 67 ~pGLnASI~E~VNA~Fkg-g~~tk~~v~GEiaL-sy~~~~~s~~p~p~~l~fRL~N~~~Lekv~p----------N~~fv 134 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKD-GMLQNSQLIGEIAL-NYLPNSVMNSPLPIGINLRINNGAKFEKVIL----------NQAFI 134 (328)
T ss_dssp CCEEEEEEEEEEEEEEET-TEEEEEEEEEEEEE-EEECCSSSCCCCCSEEEEEEETGGGEEEEEE----------CTTTE
T ss_pred CCceeEEEEEEEEEEEEC-CcEEEEEEEEEEEE-ecCCCccccCCCCccEEEEecCcchhheeeC----------CHHHh
Confidence 557889999999999964 67999999999765 566652 457787765433222111 11222
Q ss_pred cccccccccCCceEEeeCCC---CceEEEEEEeecCCCCeEEEEEEEEEcCceEEEEEEEEee
Q 021018 243 QCVRLARFENDRTISFIPPD---GSFDLMTYRLSTQVKPLIWVEAQIERHSRSRIEIMVKARS 302 (318)
Q Consensus 243 ~cV~~~~f~~~~~i~F~PPd---g~f~Lm~Y~~~~~~~~P~~v~~~~~~~~~~~~~~~i~l~~ 302 (318)
.++.-. .-.|-++- ..-.+++|+++. ...|+.+.+.-+-. +...++.|..+.
T Consensus 135 ~~~~~~------eF~vn~~~L~sktv~~lKYqVs~-~~~PL~l~p~WK~E-~~qtsliI~Yk~ 189 (328)
T 3g9h_A 135 ERVAPE------EFKVNPSFIDSRTLGAIKYSIKE-PIAPIVIHPVWRFE-SHQASVVLTVKM 189 (328)
T ss_dssp EEEETT------EEEECTTTTBTCEEEEEEEEEES-CCCSEEEEEEEEEC-SSEEEEEEEEEE
T ss_pred ccCCCC------CEEEchHHhcccceeeEEEEECC-CCCCeEEEeeeecC-CCeeEEEEEEEE
Confidence 222111 12222211 236789999975 77888887765543 234444444443
No 15
>1nrj_A Signal recognition particle receptor alpha subunit homolog; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: d.110.4.4
Probab=91.14 E-value=3.1 Score=33.63 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=49.8
Q ss_pred ceeEEEEEcCCCCEEEEEc-cCCCCChHHHHHHHHHhhcccCCCC----C------CCCEEEe-------CCEEEEEE--
Q 021018 4 AASALFLLDIKGRVLIWRD-YRGDVSAIQAERFFTKFIEKEGDPQ----S------QNPVVFD-------NGVTYMFI-- 63 (318)
Q Consensus 4 MI~~i~Iln~~G~~ll~r~-y~~~~~~~~~~~f~~~i~~~~~~~~----~------~~pvi~~-------~~~~~v~~-- 63 (318)
||+++.|...+|+++++.. +........+.+|..+++..+-.+. . .-+++.+ ++..+.|.
T Consensus 1 M~dQf~IFTp~GqVLy~yn~l~kKf~e~qiN~fIS~LitsP~~~~~~~s~~~~~~~k~~~~~i~~~~k~~~~f~~~~~~s 80 (158)
T 1nrj_A 1 MFDQLAVFTPQGQVLYQYNCLGKKFSEIQINSFISQLITSPVTRKESVANANTDGFDFNLLTINSEHKNSPSFNALFYLN 80 (158)
T ss_dssp CCCEEEEECTTCBEEEEEETTSCCCCHHHHHHHHHHHHHSCCCGGGEECSGGGTTCCEEEEECC--------CEEEEEEE
T ss_pred CcceEEEeccCceEEEEecccCcchHHHHHHHHHHHHhcCCcccccccccccccccceeeEeecccccCCCCeeEEEEec
Confidence 9999999999999999965 2233445677899999887542110 0 2357776 66666664
Q ss_pred EeCCEEEEEEecC
Q 021018 64 QHNNVYLMAASRQ 76 (318)
Q Consensus 64 ~~~~ly~v~v~~~ 76 (318)
+.-.||||++-..
T Consensus 81 kQP~LyfVvtyae 93 (158)
T 1nrj_A 81 KQPELYFVVTFAE 93 (158)
T ss_dssp ETTEEEEEEEESS
T ss_pred CCCcEEEEEEecc
Confidence 5668999988743
No 16
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=90.78 E-value=4.2 Score=35.32 Aligned_cols=25 Identities=16% Similarity=0.405 Sum_probs=21.5
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGDV 27 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~~ 27 (318)
|+|.+++|+|+.|..+++|.|..+.
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~ 25 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDE 25 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCC
T ss_pred CeeEEEEEEeCCCCEEeehhhccCc
Confidence 5799999999999999999997543
No 17
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=90.52 E-value=4 Score=34.13 Aligned_cols=84 Identities=8% Similarity=0.175 Sum_probs=59.3
Q ss_pred CCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH
Q 021018 13 IKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHNNVYLMAASRQNCNAASILLFLHRVAD 92 (318)
Q Consensus 13 ~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~~ly~v~v~~~~~n~l~~l~~L~~i~~ 92 (318)
.+|.++|+.+-... ...+.+-+.++.+-... ...-.+..++..|.|...+++.++|+++.+-.--.++.||..+.+
T Consensus 62 Arg~tiLAE~t~~~---gnf~~va~~iL~kip~~-~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI~~ 137 (173)
T 4afi_A 62 ARGTTILAKHAWCG---GNFLEVTEQILAKIPSE-NNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEVKK 137 (173)
T ss_dssp EETTEEEEEEESSC---CCHHHHHHHHHTTSCSS-SEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHHHH
T ss_pred ECCCEEEEEccCCC---CCHHHHHHHHHHhCCCC-CCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHHHH
Confidence 45778887653322 11234555555542111 111256789999999999999999999999999999999999998
Q ss_pred HHHHHhcc
Q 021018 93 VFKHYFEE 100 (318)
Q Consensus 93 ~l~~y~~~ 100 (318)
-...-++.
T Consensus 138 eF~~~yg~ 145 (173)
T 4afi_A 138 RFQTTYGS 145 (173)
T ss_dssp HHHHHHGG
T ss_pred HHHHHhch
Confidence 88776664
No 18
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=89.78 E-value=3.6 Score=33.30 Aligned_cols=91 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCCh----HHHHHHHHHhhcccC--CCCCCCCEE-EeCCEEEEEEEeCCEEEEEEecCC
Q 021018 5 ASALFLLDIKGRVLIWRDYRGDVSA----IQAERFFTKFIEKEG--DPQSQNPVV-FDNGVTYMFIQHNNVYLMAASRQN 77 (318)
Q Consensus 5 I~~i~Iln~~G~~ll~r~y~~~~~~----~~~~~f~~~i~~~~~--~~~~~~pvi-~~~~~~~v~~~~~~ly~v~v~~~~ 77 (318)
+.+|+|.|++|-+++.-...+.... ..+..|-...-+.++ -+ .+..++ .+++..++......+++..++..+
T Consensus 38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLglG-knksII~~Y~~yqvVq~n~~Plvit~Ias~~ 116 (143)
T 3cpt_A 38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGLS-KNKSIICYYNTYQVVQFNRLPLVVSFIASSS 116 (143)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTCC-CEEEEEEECSSEEEEEEEETTEEEEEEEETT
T ss_pred eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCCC-CCceEEEEecCeEEEEEecCCEEEEEEecCC
Confidence 5799999999999999876542221 234444443333211 11 234544 577888899899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 021018 78 CNAASILLFLHRVADVFKH 96 (318)
Q Consensus 78 ~n~l~~l~~L~~i~~~l~~ 96 (318)
.|.-.++++=+.+..+|.+
T Consensus 117 aNtG~Il~Le~~L~p~l~~ 135 (143)
T 3cpt_A 117 ANTGLIVSLEKELAPLFEE 135 (143)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHhhhHHHHHHHHHH
Confidence 9988888776666666654
No 19
>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1
Probab=88.26 E-value=4.3 Score=34.35 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=60.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCCChHHHHHHHHHhhcccCCCCCCCCEEEeCCEEEEEEEeC--CEEEEEEecCCCCH
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGDVSAIQAERFFTKFIEKEGDPQSQNPVVFDNGVTYMFIQHN--NVYLMAASRQNCNA 80 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~~~~~~~~~f~~~i~~~~~~~~~~~pvi~~~~~~~v~~~~~--~ly~v~v~~~~~n~ 80 (318)
+|++.+.|++..|=+|-+..-........+.++.+.++-.... ..+.+..+++..-|...| +|.||++-..--+.
T Consensus 9 ~~~D~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~---~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L 85 (185)
T 2fh5_A 9 SMVDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG---GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTL 85 (185)
T ss_dssp CSCSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC----------CCCCCEEEEEEETTTTEEEEEEESCGGGH
T ss_pred cceeEEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc---CCCceeEcCeEEEEEEeccCCEEEEEEEcccccc
Confidence 5999999999999888773222212234677888887764321 245677899888888887 57888888765555
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 021018 81 ASILLFLHRVADVFKHYFE 99 (318)
Q Consensus 81 l~~l~~L~~i~~~l~~y~~ 99 (318)
..+=+||..+.....+-++
T Consensus 86 ~YiD~LL~~v~~~Fv~~Y~ 104 (185)
T 2fh5_A 86 TYVDKLIDDVHRLFRDKYR 104 (185)
T ss_dssp HHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555554
No 20
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=87.77 E-value=2.9 Score=33.87 Aligned_cols=91 Identities=11% Similarity=0.186 Sum_probs=54.4
Q ss_pred cceeEEEEEcCCCCEEEEEccCCCC----C-hH----------HHHHHHHHhhcccCCCCCCCCEEEeCCE-EEEEEEeC
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGDV----S-AI----------QAERFFTKFIEKEGDPQSQNPVVFDNGV-TYMFIQHN 66 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~~----~-~~----------~~~~f~~~i~~~~~~~~~~~pvi~~~~~-~~v~~~~~ 66 (318)
||+.+++|+|++|.+|++|.|.... + .+ .+..+.+++.-.. +...--.+..+.+ ...|....
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~--~~~~~~~~~t~~ykl~~~~T~T 78 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLD--MKDGFLSFQTSRYKLHYYETPT 78 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSC--CSSCEEEEECSSCEEEEEECTT
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCC--CCCceEEEecCCEEEEEEEcCC
Confidence 5789999999999999999996421 1 11 2223333332111 1011124455665 56667778
Q ss_pred CEEEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Q 021018 67 NVYLMAASRQNCNAASILLFLHRVA-DVFKHY 97 (318)
Q Consensus 67 ~ly~v~v~~~~~n~l~~l~~L~~i~-~~l~~y 97 (318)
++-|+++++..++. +=++|+++. ++.-+|
T Consensus 79 giKFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (145)
T 2j3t_C 79 GIKVVMNTDLGVGP--IRDVLHHIYSALYVEF 108 (145)
T ss_dssp SCEEEEEECTTCCC--CHHHHHHHHHTTHHHH
T ss_pred CCEEEEEecCCcch--HHHHHHHHHHHHHHHH
Confidence 99999999876553 335666666 455554
No 21
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=86.15 E-value=8.7 Score=30.78 Aligned_cols=91 Identities=8% Similarity=0.023 Sum_probs=52.9
Q ss_pred eeEEEEEcCCCCEEEEEccCCCCCh---HHH-HHH----------HHHhhcccCCCCCCCCEEE---eCCE-EEEEEEeC
Q 021018 5 ASALFLLDIKGRVLIWRDYRGDVSA---IQA-ERF----------FTKFIEKEGDPQSQNPVVF---DNGV-TYMFIQHN 66 (318)
Q Consensus 5 I~~i~Iln~~G~~ll~r~y~~~~~~---~~~-~~f----------~~~i~~~~~~~~~~~pvi~---~~~~-~~v~~~~~ 66 (318)
|.+++|+|++|.+|+.+.|...... ... ..+ ..... +.. ...-... .+++ .+.|....
T Consensus 6 i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~-~~~---~~~~l~~~~~~~~y~v~~~~T~t 81 (142)
T 2j3w_A 6 SFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENM-WLS---NNMYLKTVDKFNEWFVSAFVTAG 81 (142)
T ss_dssp CEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHG-GGC---SCSEEEEEEEETTEEEEEEECTT
T ss_pred EEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhc-CCC---CcceeEeeecccceEEEEEEcCC
Confidence 6899999999999999999753221 011 011 11111 111 1111222 3343 46667777
Q ss_pred CEEEEEEecCCCCHHHHHHHHHHHHHHHHHHhcc
Q 021018 67 NVYLMAASRQNCNAASILLFLHRVADVFKHYFEE 100 (318)
Q Consensus 67 ~ly~v~v~~~~~n~l~~l~~L~~i~~~l~~y~~~ 100 (318)
++-|+++++.. +..-+=++++++.++.-+|.-+
T Consensus 82 g~Kfvl~~d~~-~~~~i~~~~~~iy~~Y~~~v~N 114 (142)
T 2j3w_A 82 HMRFIMLHDVR-QEDGIKNFFTDVYDLYIKFAMN 114 (142)
T ss_dssp CCEEEEEESSC-CHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcEEEEEeCCC-CcHHHHHHHHHHHHHHHHHhcC
Confidence 89999999763 3445556777777666665543
No 22
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=82.50 E-value=13 Score=31.70 Aligned_cols=93 Identities=11% Similarity=0.188 Sum_probs=60.1
Q ss_pred eeEEEEEcCCCC-E-EEEEccC-CC---CChHHHH---HHHH-HhhcccCCCCCCCCEEEeCCEEEE-EEEeCCEEEEEE
Q 021018 5 ASALFLLDIKGR-V-LIWRDYR-GD---VSAIQAE---RFFT-KFIEKEGDPQSQNPVVFDNGVTYM-FIQHNNVYLMAA 73 (318)
Q Consensus 5 I~~i~Iln~~G~-~-ll~r~y~-~~---~~~~~~~---~f~~-~i~~~~~~~~~~~pvi~~~~~~~v-~~~~~~ly~v~v 73 (318)
|-++.|+...|+ + ++...|. +. ..|..+. .|.. .+..+... ...-.+..++..|. |...+++.++|+
T Consensus 4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~--~~r~s~~~~~y~fH~y~~~~gl~yl~i 81 (199)
T 3kyq_A 4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK--GSRASVKEQEYLCHVYVRSDSLAGVVI 81 (199)
T ss_dssp EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT--TEEEEEECSSEEEEEEECTTSEEEEEE
T ss_pred EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC--CCeEEEEeCCEEEEEEEecCCEEEEEE
Confidence 566777765554 2 3445553 11 2244443 3443 34443211 11125667788777 888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHHHHhc
Q 021018 74 SRQNCNAASILLFLHRVADVFKHYFE 99 (318)
Q Consensus 74 ~~~~~n~l~~l~~L~~i~~~l~~y~~ 99 (318)
++.+-+--.++.||..+.+-...-++
T Consensus 82 td~~yp~r~AF~fL~ei~~eF~~~~~ 107 (199)
T 3kyq_A 82 ADSEYPSRVAFTLLEKVLDEFSKQVD 107 (199)
T ss_dssp EETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999887776665
No 23
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=75.64 E-value=7.9 Score=31.77 Aligned_cols=92 Identities=7% Similarity=0.134 Sum_probs=50.7
Q ss_pred cceeEEEEEcCCCCEEEEEccCCC-------C----ChH----------HHHHHHHHhhcccCCCCCCCCEEEeCCE-EE
Q 021018 3 GAASALFLLDIKGRVLIWRDYRGD-------V----SAI----------QAERFFTKFIEKEGDPQSQNPVVFDNGV-TY 60 (318)
Q Consensus 3 ~MI~~i~Iln~~G~~ll~r~y~~~-------~----~~~----------~~~~f~~~i~~~~~~~~~~~pvi~~~~~-~~ 60 (318)
|||.+|+|+|++|.+|+.|.|... . ... .+..|.+++.-.. ....--.+..+.+ .+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~--~~~~f~~~~T~~ykl~ 78 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGS--VKNDIRSISTGKYRVH 78 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSS--SCCCEEEEECSSCBEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCC--CCCCeEEEeeCCEEEE
Confidence 578999999999999999999431 1 011 1122222221111 0001123334444 45
Q ss_pred EEEEeCCEEEEEEecCCCCHHHHHHHHHHHHH-HHHHHh
Q 021018 61 MFIQHNNVYLMAASRQNCNAASILLFLHRVAD-VFKHYF 98 (318)
Q Consensus 61 v~~~~~~ly~v~v~~~~~n~l~~l~~L~~i~~-~l~~y~ 98 (318)
.|..-.++-||++++..++.+- ++|+++.+ +.-+|.
T Consensus 79 ~~eT~TgiKFvl~td~~~~~i~--~~l~~iy~~lYv~yv 115 (159)
T 3cue_C 79 TYCTASGLWFVLLSDFKQQSYT--QVLQYIYSHIYVKYV 115 (159)
T ss_dssp EECCSSCCEEEEECCSSSSCTH--HHHHHHHHHHHHHHH
T ss_pred EEEeCCCCEEEEEeCCCcchHH--HHHHHHHHHHHHHHH
Confidence 5666679999999987655332 45666664 555543
No 24
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=26.24 E-value=50 Score=28.52 Aligned_cols=20 Identities=10% Similarity=0.223 Sum_probs=18.6
Q ss_pred eeEEEEEcCCCCEEEEEccC
Q 021018 5 ASALFLLDIKGRVLIWRDYR 24 (318)
Q Consensus 5 I~~i~Iln~~G~~ll~r~y~ 24 (318)
|-++||+|+.|..++.+.|.
T Consensus 3 iy~~yi~~~~~~liy~~~~~ 22 (219)
T 2j3t_D 3 IFSVYVVNKAGGLIYQLDSY 22 (219)
T ss_dssp EEEEEEECTTSCEEEEEECC
T ss_pred EEEEEEEecCCceEEecccC
Confidence 89999999999999997776
No 25
>2wl8_A Peroxisomal biogenesis factor 19; protein transport, biogenesis disorder, zellweger syndrome, membrane, prenylation; 2.05A {Homo sapiens}
Probab=24.89 E-value=1.1e+02 Score=24.02 Aligned_cols=42 Identities=19% Similarity=0.506 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhccc-cH-HHHhhhHHHHHHHHHHHhcCCeee
Q 021018 84 LLFLHRVADVFKHYFEEL-EE-ESLRDNFVVVYELLDEIMDFGFPQ 127 (318)
Q Consensus 84 l~~L~~i~~~l~~y~~~l-~e-~~I~~N~~~v~~lLDE~id~G~p~ 127 (318)
++++.+|+..+.. ..- ++ ..-+.+|..|..++.+|=+.|.|=
T Consensus 65 ~~lv~~I~~~fE~--~~~~D~~~~~~~~~~~i~~Lmq~mQ~~G~PP 108 (126)
T 2wl8_A 65 HSVMCKICEQFEA--ETPTDSETTQKARFEMVLDLMQQLQDLGHPP 108 (126)
T ss_dssp HHHHHHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHcC--CCCCchhhhHHHHHHHHHHHHHHHHHcCCCc
Confidence 4445555555443 221 12 223467888889999998888863
Done!