Query 021019
Match_columns 318
No_of_seqs 309 out of 1702
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 11:33:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021019.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021019hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u3g_D Ribonuclease H, RNAse H 100.0 6E-29 2E-33 205.2 14.5 132 174-305 2-138 (140)
2 3hst_B Protein RV2228C/MT2287; 100.0 1.2E-28 4.1E-33 204.1 15.2 131 175-305 3-134 (141)
3 2ehg_A Ribonuclease HI; RNAse 99.9 1.1E-27 3.7E-32 200.9 12.1 136 176-313 2-143 (149)
4 2qkb_A Ribonuclease H1, HS-RNA 99.9 2.3E-24 7.8E-29 181.8 13.7 129 174-306 6-153 (154)
5 3h08_A RNH (ribonuclease H); R 99.9 1.2E-24 4.2E-29 181.7 11.1 127 174-305 3-145 (146)
6 2lsn_A Reverse transcriptase; 99.9 1.4E-23 4.9E-28 178.9 13.7 129 175-304 7-163 (165)
7 1jl1_A Ribonuclease HI; RNAse 99.9 6.7E-24 2.3E-28 179.3 10.9 128 175-307 4-146 (155)
8 2e4l_A Ribonuclease HI, RNAse 99.9 1.2E-23 3.9E-28 178.4 12.3 126 174-304 5-145 (158)
9 3qio_A GAG-POL polyprotein; RN 99.9 1.9E-23 6.7E-28 175.6 12.6 122 174-304 11-147 (150)
10 1ril_A Ribonuclease H; hydrola 99.9 4.4E-24 1.5E-28 182.4 7.7 128 174-306 7-150 (166)
11 2kq2_A Ribonuclease H-related 99.9 1.5E-23 5E-28 175.7 6.3 129 174-308 5-141 (147)
12 3p1g_A Xenotropic murine leuke 99.9 5.7E-22 1.9E-26 169.1 13.0 124 175-306 23-158 (165)
13 3bsu_A Ribonuclease H1, RNAse 99.9 3E-22 1E-26 138.0 5.1 51 4-58 1-51 (53)
14 1qhk_A RNAse HI, protein (ribo 99.8 2.5E-22 8.5E-27 135.0 3.4 47 6-56 1-47 (47)
15 1zbf_A Ribonuclease H-related 99.8 1.2E-20 4E-25 156.9 3.8 119 174-295 10-138 (142)
16 4htu_A Ribonuclease H, RNAse H 99.8 3.4E-19 1.2E-23 145.9 7.2 99 175-276 5-107 (134)
17 1mu2_A HIV-2 RT; HIV-2 reverse 99.8 1.4E-18 4.8E-23 174.3 10.9 117 174-302 435-555 (555)
18 2zd1_A Reverse transcriptase/r 99.7 7.9E-18 2.7E-22 169.0 8.1 116 174-301 438-557 (557)
19 1rw3_A POL polyprotein; RNA an 80.2 0.23 8E-06 47.8 -1.2 74 175-255 346-427 (455)
20 2zd1_B P51 RT; P51/P66, hetero 73.7 8.4 0.00029 36.6 7.7 80 174-259 323-408 (428)
21 3ugs_B Undecaprenyl pyrophosph 68.5 20 0.00068 31.1 8.2 67 215-288 29-101 (225)
22 4h8e_A Undecaprenyl pyrophosph 59.2 7.3 0.00025 34.6 3.7 43 215-264 47-89 (256)
23 1uwz_A Cytidine deaminase; CDD 45.2 43 0.0015 26.4 5.9 54 192-246 25-79 (136)
24 2z3g_A Blasticidin-S deaminase 43.1 40 0.0014 26.3 5.4 54 191-246 27-80 (130)
25 2lsn_A Reverse transcriptase; 41.4 6.9 0.00024 32.2 0.6 22 214-235 49-70 (165)
26 2fr5_A Cytidine deaminase; tet 39.9 47 0.0016 26.6 5.4 56 191-247 36-92 (146)
27 3n4p_A Terminase subunit UL89 37.7 1.3E+02 0.0043 26.7 8.1 73 174-246 61-142 (279)
28 3tue_A Tryparedoxin peroxidase 37.4 74 0.0025 27.2 6.6 46 190-236 145-190 (219)
29 3sgv_B Undecaprenyl pyrophosph 36.1 22 0.00075 31.4 3.0 32 215-246 40-71 (253)
30 2vg0_A Short-chain Z-isoprenyl 35.5 1.2E+02 0.0041 26.0 7.7 64 218-288 29-96 (227)
31 3sbc_A Peroxiredoxin TSA1; alp 33.8 88 0.003 26.6 6.5 46 190-236 141-186 (216)
32 2vg3_A Undecaprenyl pyrophosph 25.5 2E+02 0.0068 25.6 7.5 29 218-246 81-109 (284)
33 2nx8_A TRNA-specific adenosine 25.0 67 0.0023 26.5 4.0 53 192-245 37-91 (179)
34 2b3j_A TRNA adenosine deaminas 24.6 71 0.0024 25.7 4.0 52 193-245 29-82 (159)
35 2g84_A Cytidine and deoxycytid 23.2 1.2E+02 0.0041 25.3 5.3 40 193-232 50-92 (197)
36 2doe_A Transcription elongatio 23.1 55 0.0019 23.5 2.8 36 17-58 32-67 (83)
37 2d30_A Cytidine deaminase; pur 22.7 1.4E+02 0.0049 23.6 5.4 55 192-247 34-89 (141)
38 1wwr_A TRNA adenosine deaminas 21.9 84 0.0029 25.7 4.0 54 192-246 44-99 (171)
39 2a8n_A Cytidine and deoxycytid 21.8 71 0.0024 25.2 3.4 52 192-244 25-78 (144)
40 3dh1_A TRNA-specific adenosine 21.0 97 0.0033 25.8 4.3 40 193-233 48-89 (189)
41 2d2r_A Undecaprenyl pyrophosph 20.5 2.6E+02 0.0089 24.3 7.1 29 218-246 41-69 (245)
42 4g2e_A Peroxiredoxin; redox pr 20.4 1.3E+02 0.0044 23.3 4.8 36 194-229 121-156 (157)
No 1
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.96 E-value=6e-29 Score=205.15 Aligned_cols=132 Identities=33% Similarity=0.469 Sum_probs=121.6
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCe----eEEEEcCcHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYK----HIRVQGDSKLV 249 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~----~v~I~tDS~~v 249 (318)
..++|||||||+++++.+|+|+++++.+|+.+...+...+..|||+||++|+++||+++.+.+.+ +|+|+|||++|
T Consensus 2 ~~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~~~~~v~i~tDS~~v 81 (140)
T 3u3g_D 2 NKIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYIGETTNNVAEYEALIRALEDLQMFGDKLVDMEVEVRMDSELI 81 (140)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEEEEECHHHHHHHHHHHHHHHHGGGGGGGTTCEEEEEESCHHH
T ss_pred ceEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeCCCCchHHHHHHHHHHHHHHHHHcCCCCCCceEEEEeChHHH
Confidence 36899999999999999999999999888877677766667899999999999999999998888 99999999999
Q ss_pred HHHHcccccccchhHHHHHHHHHHH-HhcCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 021019 250 CMQIQGLWKINNQNLAGLCKEAKEL-KEKFQSFQINHILRNLNSEADAQANMGIYLK 305 (318)
Q Consensus 250 i~~l~~~w~~~~~~~~~l~~~i~~l-~~~f~~v~~~Hv~r~~Ne~AD~LAk~A~~~~ 305 (318)
++++++.|+.++..+..+++++..+ ..+|..|.+.||++++|+.||+||++|+...
T Consensus 82 i~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 138 (140)
T 3u3g_D 82 VRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPREKNARADELVNEAIDKA 138 (140)
T ss_dssp HHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCGGGGHHHHHHHHHHHHHH
T ss_pred HHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCchhhHHHHHHHHHHHHhc
Confidence 9999999998888899999999999 9999999999999999999999999998653
No 2
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.96 E-value=1.2e-28 Score=204.07 Aligned_cols=131 Identities=40% Similarity=0.577 Sum_probs=120.8
Q ss_pred eEEEEEcCcccCCCCceEEEEEEEeCC-CcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 175 SCTLEFDGASKGNPGQAGAGAVLRAED-GSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~~G~Gvvi~~~~-g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
.++|||||||+++++.+|+|+++++.+ +..+...+...+..|||+|||+|++.||+++.+++.++|.|+|||++|++++
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~~~~tn~~aEl~A~~~aL~~a~~~~~~~v~i~tDS~~vv~~i 82 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAIGRATNNVAEYRGLIAGLDDAVKLGATEAAVLMDSKLVVEQM 82 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEEEEECHHHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHH
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccCCCCchHHHHHHHHHHHHHHHHHCCCceEEEEeChHHHHHHH
Confidence 589999999999999999999999876 6666666666678899999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhcCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 021019 254 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLK 305 (318)
Q Consensus 254 ~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~r~~Ne~AD~LAk~A~~~~ 305 (318)
++.|+.++..+..++++++.+..+|..|.+.||++++|+.||+||+.|++..
T Consensus 83 ~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~~~N~~AD~LA~~a~~~~ 134 (141)
T 3hst_B 83 SGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPRARNTYADRLANDAMDAA 134 (141)
T ss_dssp TTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCGGGCHHHHHHHHHHHHHH
T ss_pred hCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCCcccHHHHHHHHHHHHHh
Confidence 9999998888999999999999999999999999999999999999998754
No 3
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.95 E-value=1.1e-27 Score=200.85 Aligned_cols=136 Identities=29% Similarity=0.355 Sum_probs=118.8
Q ss_pred EEEEEcCccc-CCCCceEE-EEEEEeCCCcEEEEeecccC----CCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHH
Q 021019 176 CTLEFDGASK-GNPGQAGA-GAVLRAEDGSVVYRLREGVG----IATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 249 (318)
Q Consensus 176 ~~iytDGS~~-~~~~~~G~-Gvvi~~~~g~~~~~~~~~~~----~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~v 249 (318)
++|||||||+ +|++.+|+ |+++++ +|..+.......+ ..|||+||++|++.||+.+.+.+.++|+|+|||++|
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~-~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~~~v~i~tDS~~v 80 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYL-DNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGISSPIIKGDSQLV 80 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEEC-SSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTCCSCEEEESCHHH
T ss_pred EEEEEeeccCCCCCChheEEEEEEEE-CCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCCCEEEEEeChHHH
Confidence 6899999999 79899995 999998 7776554433323 789999999999999999999999999999999999
Q ss_pred HHHHcccccccchhHHHHHHHHHHHHhcCCcEEEEEeCCcccHHHHHHHHHHhcCCCCceeccc
Q 021019 250 CMQIQGLWKINNQNLAGLCKEAKELKEKFQSFQINHILRNLNSEADAQANMGIYLKDGQVEAEC 313 (318)
Q Consensus 250 i~~l~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~r~~Ne~AD~LAk~A~~~~~~~~~~~~ 313 (318)
++++++.|+.+++.+.+|++++..+..+| .|.+.||++++|+.||+||+.|+........++.
T Consensus 81 i~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~~~N~~AD~LA~~a~~~~~~~~~~~~ 143 (149)
T 2ehg_A 81 IKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPREENKEADRLSRVAYELVRRGKLRDI 143 (149)
T ss_dssp HHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCGGGCHHHHHHHHHHHHHHHTTSCCSB
T ss_pred HHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHHHHHHHHHhhccCcccee
Confidence 99999999988888999999999999988 6999999999999999999999987655444433
No 4
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.91 E-value=2.3e-24 Score=181.81 Aligned_cols=129 Identities=21% Similarity=0.144 Sum_probs=105.3
Q ss_pred ceEEEEEcCcccCCCC---ceEEEEEEEeCCCcEEEEeeccc-CCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHH
Q 021019 174 YSCTLEFDGASKGNPG---QAGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLV 249 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~---~~G~Gvvi~~~~g~~~~~~~~~~-~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~v 249 (318)
+.++|||||||.+|++ .+|+|+++.+.+...+. ..+ +..|||+|||+|++.||+.+.+.+.++|+|+|||++|
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~---~~l~~~~tn~~aEl~A~~~aL~~~~~~~~~~v~i~tDS~~v 82 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVG---IRLPGRQTNQRAEIHAACKAIEQAKTQNINKLVLYTNSMFT 82 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEE---EECCSSCCHHHHHHHHHHHHHHHHHHTTCCEEEEEESCHHH
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEE---eecCCCCchHHHHHHHHHHHHHHHHhCCCceEEEEECcHHH
Confidence 5899999999998875 38999999875543322 222 3689999999999999999999888999999999999
Q ss_pred HHHHcc--------cccccc---hhHHHHHHHHHHHHhcCCcEEEEEeCC----cccHHHHHHHHHHhcCCC
Q 021019 250 CMQIQG--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMGIYLKD 306 (318)
Q Consensus 250 i~~l~~--------~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~r----~~Ne~AD~LAk~A~~~~~ 306 (318)
++.|++ +|+... ..+++||++|..++..+ .|.|.||++ ++|+.||+||++|+..+.
T Consensus 83 i~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~~~-~v~~~~V~~H~g~~~N~~AD~LA~~a~~~~~ 153 (154)
T 2qkb_A 83 INGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQGM-DIQWMHVPGHSGFIGNEEADRLAREGAKQSE 153 (154)
T ss_dssp HHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHTTC-EEEEEECCTTSSCHHHHHHHHHHHHHHTCC-
T ss_pred HhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHcCC-ceEEEEccCCCCCHhHHHHHHHHHHHHHhcc
Confidence 999986 455443 25789999999988876 488888875 779999999999998753
No 5
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.91 E-value=1.2e-24 Score=181.74 Aligned_cols=127 Identities=25% Similarity=0.272 Sum_probs=102.3
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
..++|||||||+++++.+|+|+++.+.+ ....+++..+..|||+|||+|++.||+.+.+ .++|.|+|||++|++.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~--~~~~~~~~~~~~Tnn~aEl~A~~~AL~~~~~--~~~v~I~tDS~~vi~~i 78 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGS--SRKEISGYDPATTNNRMELMAAIKGLEALKE--PARVQLYSDSAYLVNAM 78 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETT--EEEEEEEEEEEECHHHHHHHHHHHHHHTCSS--CCEEEEEESCHHHHHHH
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECC--eeEEeecCCCCCcHHHHHHHHHHHHHHhcCc--cCcEEEEeChHHHHHHH
Confidence 3689999999999999999999998854 2345555556789999999999999998865 47899999999999999
Q ss_pred cccc----c-----ccc---hhHHHHHHHHHHHHhcCCcEEEEEe----CCcccHHHHHHHHHHhcCC
Q 021019 254 QGLW----K-----INN---QNLAGLCKEAKELKEKFQSFQINHI----LRNLNSEADAQANMGIYLK 305 (318)
Q Consensus 254 ~~~w----~-----~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv----~r~~Ne~AD~LAk~A~~~~ 305 (318)
+++| + ... ..+++|++++..+...+ .|.|.|| ++++|+.||+||++|+...
T Consensus 79 ~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~~-~v~~~~V~gH~g~~~N~~AD~LA~~a~~~~ 145 (146)
T 3h08_A 79 NEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTLH-RVTFHKVKGHSDNPYNSRADELARLAIKEN 145 (146)
T ss_dssp HSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHHS-EEEEEECCC-CCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhhC-ceEEEEcCCcCCcHhHHHHHHHHHHHHHhC
Confidence 8743 2 222 25689999999988875 3555555 4999999999999998653
No 6
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.90 E-value=1.4e-23 Score=178.93 Aligned_cols=129 Identities=26% Similarity=0.235 Sum_probs=101.1
Q ss_pred eEEEEEcCcccCCCCc-----eEEEEEEEeCCCc--EEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcH
Q 021019 175 SCTLEFDGASKGNPGQ-----AGAGAVLRAEDGS--VVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSK 247 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~-----~G~Gvvi~~~~g~--~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~ 247 (318)
.++|||||||++|++. +|||+++...+.+ ............|+++|||.||..||+.+++.+ .+|.|+|||+
T Consensus 7 evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~~-~~v~I~TDS~ 85 (165)
T 2lsn_A 7 EGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKIP-GPVLVITDSF 85 (165)
T ss_dssp SEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHSS-SCEEEEESCH
T ss_pred eEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEeChH
Confidence 5899999999999875 9999999764432 222233333567888999999999999888776 4799999999
Q ss_pred HHHHHHcc---ccccc-----c---hhHHHHHHHHHHHHhcCCcEEEEEeC----------CcccHHHHHHHHHHhcC
Q 021019 248 LVCMQIQG---LWKIN-----N---QNLAGLCKEAKELKEKFQSFQINHIL----------RNLNSEADAQANMGIYL 304 (318)
Q Consensus 248 ~vi~~l~~---~w~~~-----~---~~~~~l~~~i~~l~~~f~~v~~~Hv~----------r~~Ne~AD~LAk~A~~~ 304 (318)
||+++++. .|+.+ . ..+.+||+++..++..+..|.|.||. +++|++||+||++|+..
T Consensus 86 Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~VkgH~g~~~~~~~~gNe~AD~LA~~gA~~ 163 (165)
T 2lsn_A 86 YVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKGHQPTNTSIHTEGNALADKLATQGSYV 163 (165)
T ss_dssp HHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCSSSCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeCCCCccCCCCChHHHHHHHHHHHhhhh
Confidence 99999985 34433 2 15789999999988877788888886 45799999999999853
No 7
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.90 E-value=6.7e-24 Score=179.27 Aligned_cols=128 Identities=23% Similarity=0.253 Sum_probs=104.1
Q ss_pred eEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHc
Q 021019 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 254 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~ 254 (318)
.++|||||||++|++.+|+|+++.+.++ ...+++..+..|||+|||+|++.||+.+.+. ++|.|+|||++|++.++
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~--~~~~~~~~~~~tn~~aEl~A~~~aL~~~~~~--~~v~I~tDS~~vi~~i~ 79 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGR--EKTFSAGYTRTTNNRMELMAAIVALEALKEH--AEVILSTDSQYVRQGIT 79 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTE--EEEEEEEEEEECHHHHHHHHHHHHHHTCCSC--CEEEEEECCHHHHHHHH
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCe--EEEEecCCCCCcHHHHHHHHHHHHHHHhCcC--CcEEEEeCHHHHHHHHH
Confidence 5899999999999989999999987553 2344444567899999999999999988653 68999999999999999
Q ss_pred c--------cccccc---hhHHHHHHHHHHHHhcCCcEEEEEeC----CcccHHHHHHHHHHhcCCCC
Q 021019 255 G--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYLKDG 307 (318)
Q Consensus 255 ~--------~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~----r~~Ne~AD~LAk~A~~~~~~ 307 (318)
+ +|+... ..+.+|++++..+...+ .|.|.||+ +++|+.||+||+.|+..+..
T Consensus 80 ~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 80 QWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQH-QIKWEWVKGHAGHPENERADELARAAAMNPTL 146 (155)
T ss_dssp TTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTTTC-EEEEEECCSSTTCHHHHHHHHHHHHHHHSCCB
T ss_pred HHHHHHhhcccccccCCccCCHHHHHHHHHHHccC-ceEEEEcCCCCCCHHHHHHHHHHHHHHhccch
Confidence 7 444332 14578999999887764 67777776 89999999999999987643
No 8
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.90 E-value=1.2e-23 Score=178.41 Aligned_cols=126 Identities=22% Similarity=0.264 Sum_probs=103.6
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
..++|||||||++|++.+|+|+++.+.+ . ...+++..+..|||+|||+|++.||+.+.+. ++|.|+|||++|++.+
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~-~-~~~~~~~~~~~tn~~aEl~A~~~AL~~~~~~--~~v~I~tDS~~vi~~i 80 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKG-H-TKEMSDGFSLTTNNRMELLAPIVALEALKEP--CKIILTSDSQYMRQGI 80 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETT-E-EEEEEEEEEEECHHHHHHHHHHHHHHTCSSC--CEEEEEECCHHHHHHH
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECC-E-EEEEecCcCCCccHHHHHHHHHHHHHHhccC--CeEEEEeCHHHHHHHH
Confidence 4689999999999999999999998743 2 3444555567899999999999999987543 7899999999999998
Q ss_pred cc--------cccccc---hhHHHHHHHHHHHHhcCCcEEEEEeC----CcccHHHHHHHHHHhcC
Q 021019 254 QG--------LWKINN---QNLAGLCKEAKELKEKFQSFQINHIL----RNLNSEADAQANMGIYL 304 (318)
Q Consensus 254 ~~--------~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~----r~~Ne~AD~LAk~A~~~ 304 (318)
++ +|+... ..+.+||+.+..+...+ .|.|.||+ +++|+.||+||+.|+..
T Consensus 81 ~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~ 145 (158)
T 2e4l_A 81 MTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQLH-QIDWRWVKGHAGHAENERCDQLARAAAEA 145 (158)
T ss_dssp HTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHTTS-EEEEEECCTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccccccCCCcccCHHHHHHHHHHHccC-cEEEEEccCCCCchhHHHHHHHHHHHHHh
Confidence 87 554432 25678999999988764 67777776 88999999999999987
No 9
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.90 E-value=1.9e-23 Score=175.59 Aligned_cols=122 Identities=21% Similarity=0.209 Sum_probs=97.7
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
+.++|||||||++|++.+|+|+++.+..+. .. ..+..|||+|||+|++.||+.+ + ++|.|+|||++|++.+
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~---~~--~~~~~Tnn~aEl~A~i~AL~~~---~-~~v~i~tDS~~v~~~i 81 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTNRGRQK---VV--TLTDTTNQKTELQAIYLALQDS---G-LEVNIVTDSQYALGII 81 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEE---EE--EESSCCHHHHHHHHHHHHHHHS---C-SEEEEEESCHHHHHHH
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEEcCCEE---EE--eCCCCCHHHHHHHHHHHHHHhC---C-CcEEEEeCcHHHHHHH
Confidence 479999999999999999999998764322 12 2357899999999999999974 3 7899999999999998
Q ss_pred cc---cccccc-----h---hHHHHHHHHHHHHhcCCcEEEEEeCCc----ccHHHHHHHHHHhcC
Q 021019 254 QG---LWKINN-----Q---NLAGLCKEAKELKEKFQSFQINHILRN----LNSEADAQANMGIYL 304 (318)
Q Consensus 254 ~~---~w~~~~-----~---~~~~l~~~i~~l~~~f~~v~~~Hv~r~----~Ne~AD~LAk~A~~~ 304 (318)
++ .|+.++ . .+++||+++..++.++..|.+.||+++ +|+.||+||++|+..
T Consensus 82 ~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD~LA~~a~~~ 147 (150)
T 3qio_A 82 TQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAGIRK 147 (150)
T ss_dssp HHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHHHHHHHHHHH
Confidence 85 344332 1 568899999887777888888888765 599999999999875
No 10
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.90 E-value=4.4e-24 Score=182.44 Aligned_cols=128 Identities=23% Similarity=0.233 Sum_probs=102.3
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
..++|||||||++|++.+|+|+++.+.++. ..+++..+..|||+|||+|++.||+.+.+. .+|+|+|||++|++.|
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~--~~~~~~~~~~Tnn~aEl~Ai~~AL~~~~~~--~~v~I~tDS~~vi~~i 82 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHE--KLLSGGEACTTNNRMELKAAIEGLKALKEP--CEVDLYTDSHYLKKAF 82 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBC--CEECCEEEEECHHHHHHHHHHHHHHSCCSC--CEEEEECCCHHHHHHH
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEE--EEEecCCCCCcHHHHHHHHHHHHHHHhccC--CeEEEEeChHHHHHHH
Confidence 478999999999999999999999875432 234444457899999999999999987654 4899999999999999
Q ss_pred cc---------cccccch---hHHHHHHHHHHHHhcCCcEEEEEe----CCcccHHHHHHHHHHhcCCC
Q 021019 254 QG---------LWKINNQ---NLAGLCKEAKELKEKFQSFQINHI----LRNLNSEADAQANMGIYLKD 306 (318)
Q Consensus 254 ~~---------~w~~~~~---~~~~l~~~i~~l~~~f~~v~~~Hv----~r~~Ne~AD~LAk~A~~~~~ 306 (318)
++ +|+.... .+.+||+++..++..+ .|.|.|| ++++|+.||+||++|+....
T Consensus 83 ~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~~~-~v~~~wV~gH~g~~~Ne~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 83 TEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMAPH-RVRFHFVKGHTGHPENERVDREARRQAQSQA 150 (166)
T ss_dssp HSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHTTS-EEECCCCCGGGSCTHHHHHHHHHHHHHTSSC
T ss_pred hhhHHHHHHhcccccccCCccCcHHHHHHHHHHHhcC-eEEEEEeeCCCCchhHHHHHHHHHHHHHHhh
Confidence 98 3544332 4678999999888764 5555555 59999999999999998764
No 11
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.88 E-value=1.5e-23 Score=175.72 Aligned_cols=129 Identities=22% Similarity=0.214 Sum_probs=99.4
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeec-cc--C---CCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE-GV--G---IATNNVAEYRALILGLKYALQKGYKHIRVQGDSK 247 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~-~~--~---~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~ 247 (318)
+.++|||||||++ +.+|+|+++++ +|.. ..++. .. + ..|||+|||+|++.||+++++.+. +|.|+|||+
T Consensus 5 ~~i~iytDGs~~~--g~~G~G~vi~~-~g~~-~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~~~-~v~I~tDS~ 79 (147)
T 2kq2_A 5 TEYDVYTDGSYVN--GQYAWAYAFVK-DGKV-HYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQLGV-KIRILHDYA 79 (147)
T ss_dssp SCCEEECCCCCBT--TBCEEEEEEEE-TTEE-EEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHHTC-CCCBSSCCS
T ss_pred CeEEEEECCCCCC--CCcEEEEEEEE-CCEE-EEEEeccccccccccccHHHHHHHHHHHHHHHHHHCCC-eEEEEECcH
Confidence 4689999999986 78999999987 4543 33333 11 2 469999999999999999998888 999999999
Q ss_pred HHHHHHcccccccchhHHHHHHHHHHHH--hcCCcEEEEEeCCcccHHHHHHHHHHhcCCCCc
Q 021019 248 LVCMQIQGLWKINNQNLAGLCKEAKELK--EKFQSFQINHILRNLNSEADAQANMGIYLKDGQ 308 (318)
Q Consensus 248 ~vi~~l~~~w~~~~~~~~~l~~~i~~l~--~~f~~v~~~Hv~r~~Ne~AD~LAk~A~~~~~~~ 308 (318)
.+.+|+.+.|+.+.+....+.+.++.|. ..|.+| .+|.++++|+.||+||++|+......
T Consensus 80 ~i~~w~~~~w~~~~~~~~~~~~l~~~l~~~v~~~wV-~gH~g~~~Ne~AD~LA~~a~~~~~~~ 141 (147)
T 2kq2_A 80 GIAFWATGEWKAKNEFTQAYAKLMNQYRGIYSFEKV-KAHSGNEFNDYVDMKAKSALGIRDLE 141 (147)
T ss_dssp THHHHTTSSSSCCHHHHHHHHCGGGGGSTTCCBCCC-CCCCCCHHHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHhCCCccCCcchHHHHHHHHHhcCCeeEEEe-cCcCCCcchHHHHHHHHHHHhccccc
Confidence 9999999999988754433333333332 223333 48888999999999999999876543
No 12
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.87 E-value=5.7e-22 Score=169.10 Aligned_cols=124 Identities=23% Similarity=0.088 Sum_probs=98.9
Q ss_pred eEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHc
Q 021019 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 254 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~ 254 (318)
.++|||||||.+|++.+|+|+++... ++.+ .........|||+|||+|++.||+++ ..++|.|+|||+++++.+
T Consensus 23 ~i~iytDGs~~~npG~~g~G~vi~~~-~~~~-~~~~~~~~~Tnn~aEl~Ai~~AL~~~---~~~~v~I~tDS~~vi~~i- 96 (165)
T 3p1g_A 23 DYTWYTDGSSFLQEGQRRAGAAVTTE-TEVI-WARALPAGTSAQRAELIALTQALKMA---EGKKLNVYTDSRYAFATA- 96 (165)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEECS-SCEE-EEEEECTTCCHHHHHHHHHHHHHHHT---BTSEEEEEECCHHHHHHH-
T ss_pred CEEEEEEcccCCCCCceEEEEEEEEC-CEEE-EEecCCCCCcHHHHHHHHHHHHHHHc---cCceEEEEEchHHHHhhh-
Confidence 69999999999999999999999874 4433 33334457899999999999999988 247899999999999988
Q ss_pred ccccccc---hhHHHHHHHHHHHHhcCCcEEEEEeCC---------cccHHHHHHHHHHhcCCC
Q 021019 255 GLWKINN---QNLAGLCKEAKELKEKFQSFQINHILR---------NLNSEADAQANMGIYLKD 306 (318)
Q Consensus 255 ~~w~~~~---~~~~~l~~~i~~l~~~f~~v~~~Hv~r---------~~Ne~AD~LAk~A~~~~~ 306 (318)
|.... ..++++|+++...+..+..|.|.||+. ++|+.||+||++|+..+.
T Consensus 97 --w~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~~aa~~~~ 158 (165)
T 3p1g_A 97 --HVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAREAAMKAV 158 (165)
T ss_dssp --HSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHHHHHhcCC
Confidence 53322 256788998876555677788888864 459999999999987653
No 13
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=99.85 E-value=3e-22 Score=138.00 Aligned_cols=51 Identities=24% Similarity=0.497 Sum_probs=47.0
Q ss_pred CCCceEEEEeCCccccccChHHHHHHhccccCCCCcceecCCCCHHHHHHHHHhc
Q 021019 4 EKDAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASH 58 (318)
Q Consensus 4 ~~~~~yav~~g~~~gi~~~w~~~~~~~~~~~~~~~~~~~k~f~~~~~a~~~~~~~ 58 (318)
+.++||||++||+||||+||+||++||+ ||+||+||+|.|++||++||.+.
T Consensus 1 g~~kyYaV~~G~~~GIy~sW~ec~~qV~----g~~ga~yK~F~t~~eA~~~l~~~ 51 (53)
T 3bsu_A 1 GSHMFYAVRRGRKTGVFLTWNECRAQVD----RFPAARFKKFATEDEAWAFVRKS 51 (53)
T ss_dssp --CCEEEEEESSSCEEESSHHHHHHHHT----TCTTCEEEEESSHHHHHHHHHC-
T ss_pred CCCCEEEEEeCCCCceECCHHHHHHHhc----CCCCCccCCCCCHHHHHHHHHhC
Confidence 3578999999999999999999999999 99999999999999999999863
No 14
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=99.85 E-value=2.5e-22 Score=134.99 Aligned_cols=47 Identities=34% Similarity=0.655 Sum_probs=45.5
Q ss_pred CceEEEEeCCccccccChHHHHHHhccccCCCCcceecCCCCHHHHHHHHH
Q 021019 6 DAFYVVRKGDVVGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLA 56 (318)
Q Consensus 6 ~~~yav~~g~~~gi~~~w~~~~~~~~~~~~~~~~~~~k~f~~~~~a~~~~~ 56 (318)
|+||||++||+||||+||+||++||. ||+||.||+|.|++||++||+
T Consensus 1 ~kyYaV~~G~~~GIy~sW~ec~~qV~----g~~ga~yK~F~t~~eA~~~l~ 47 (47)
T 1qhk_A 1 GNFYAVRKGRETGIYNTWNECKNQVD----GYGGAIYKKFNSYEQAKSFLG 47 (47)
T ss_dssp CEEEEECSSSSCEEEEEHHHHHHHSS----SCSSCCCEEESCHHHHHHHHC
T ss_pred CCEEEEEeCCCCceECCHHHHHHHhc----CCCCCccCCCCCHHHHHHHhC
Confidence 58999999999999999999999999 999999999999999999983
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.80 E-value=1.2e-20 Score=156.93 Aligned_cols=119 Identities=24% Similarity=0.288 Sum_probs=90.9
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
..++|||||||++|++.+|+|++++ .+|..+. .++..+..|||+|||+|+++||+.+.+.+. +|.|+|||++|++|+
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~-~~g~~~~-~~~~~~~~TNN~aEl~A~i~aL~~~~~~~~-~v~i~tDS~~vi~w~ 86 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDT-KTGEVLF-EREPIPIGTNNMGEFLAIVHGLRYLKERNS-RKPIYSNSQTAIKWV 86 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEET-TTCCEEE-ECCCEEEECHHHHHHHHHHHHHHHHHHTTC-CCCEEESCHHHHHHH
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEE-eCCEEEE-EecccCCcCcHHHHHHHHHHHHHHHHhCCC-eEEEEEehHHHHHHH
Confidence 4789999999999999999999998 5666543 334455789999999999999999999888 999999999999999
Q ss_pred ccccccc----chhHHHHHHHHHHHHhc-----CC-cEEEEEeCCcccHHHH
Q 021019 254 QGLWKIN----NQNLAGLCKEAKELKEK-----FQ-SFQINHILRNLNSEAD 295 (318)
Q Consensus 254 ~~~w~~~----~~~~~~l~~~i~~l~~~-----f~-~v~~~Hv~r~~Ne~AD 295 (318)
++.|... ...+.+||+.+..+..- +. .+...|....+|..||
T Consensus 87 ~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 87 KDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp HHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred HcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 9987432 23678888887765332 22 2223444455665554
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=99.77 E-value=3.4e-19 Score=145.91 Aligned_cols=99 Identities=26% Similarity=0.339 Sum_probs=79.6
Q ss_pred eEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHc
Q 021019 175 SCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQ 254 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~ 254 (318)
...|||||||++|++.+|+|+|+.. +|..+... +..+..|||+|||+|+++||+.+.+.+.+ +.|+|||+||++||.
T Consensus 5 ~~~iytDGac~GNPGp~G~ggV~~~-~g~~~~~~-g~~~~tTNN~aEl~A~i~aL~~l~~~~~~-v~i~tDSqyVi~wi~ 81 (134)
T 4htu_A 5 WESLSVDVGSQGNPGIVEYKGVDTK-TGEVLFER-EPIPIGTNNMGEFLAIVHGLRYLKERNSR-KPIYSNSQTAIKWVK 81 (134)
T ss_dssp SSSEEEEEEEETTTEEEEEEEEETT-TCCEEEEE-EEEEEECHHHHHHHHHHHHHHHHHHTTCC-CCEEESCHHHHHHHH
T ss_pred ceEEEEeeccCCCCCCeEEEEEEEE-CCEEEEEe-cCCCCCchHHHHHHHHHHHHHHHHhCCCC-EEEEcchHHHHHHHH
Confidence 4689999999999999999888766 56544433 44567899999999999999999988765 899999999999998
Q ss_pred c-cccccc---hhHHHHHHHHHHHHh
Q 021019 255 G-LWKINN---QNLAGLCKEAKELKE 276 (318)
Q Consensus 255 ~-~w~~~~---~~~~~l~~~i~~l~~ 276 (318)
+ .|+... ..+.+||+.+.++..
T Consensus 82 ~~~~kt~~~~~vkN~dLw~~ld~~~~ 107 (134)
T 4htu_A 82 DKKAKSTLVRNEETALIWKLVDEAEE 107 (134)
T ss_dssp HTCCCCCCCCSSTTHHHHHHHHHHHH
T ss_pred cCCcccCCCCCccCHHHHHHHHHHHH
Confidence 6 455432 267888888876543
No 17
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.76 E-value=1.4e-18 Score=174.33 Aligned_cols=117 Identities=19% Similarity=0.146 Sum_probs=93.3
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
+.++|||||||++|++.+|+|+++..+++. .......|||+|||+|++.||+. +.++|.|+|||++|++++
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~-----~~~~~~~TNn~aEl~A~i~aL~~----~~~~v~I~tDS~~v~~~i 505 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTDRGKDK-----VKKLEQTTNQQAELEAFAMALTD----SGPKVNIIVDSQYVMGIV 505 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEE-----EEEESSCCHHHHHHHHHHHHHHT----SCSEEEEEESCHHHHHHH
T ss_pred CceEEEEcccccCCCCCceEEEEEEeCCEe-----eccCCCCCHHHHHHHHHHHHHHc----CCCeEEEEEehHHHHHHH
Confidence 579999999999999999999999764321 22345789999999999999986 567999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhcCCcEEEEEe----CCcccHHHHHHHHHHh
Q 021019 254 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHI----LRNLNSEADAQANMGI 302 (318)
Q Consensus 254 ~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv----~r~~Ne~AD~LAk~A~ 302 (318)
++ |... .+.++++++..++..+..+.+.|| ++++|+.||+||++|+
T Consensus 506 ~~-~~~~--~~~~l~~~~~~~~~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 506 AS-QPTE--SESKIVNQIIEEMIKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp HT-CCSE--ESCHHHHHHHHHHHHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred hc-cccc--ccHHHHHHHHHHhccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 98 7543 234677777766555666666665 4589999999999874
No 18
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.71 E-value=7.9e-18 Score=168.97 Aligned_cols=116 Identities=21% Similarity=0.156 Sum_probs=88.0
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQI 253 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l 253 (318)
+.++|||||||++|++.+|+|+++..+. ... . .....|||+|||.|++.||+.+ .++|.|+|||++|++++
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~~~-~~~--~--~~~~~TNn~aEl~Ai~~aL~~~----~~~v~I~tDS~~vi~~i 508 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNKGR-QKV--V--PLTNTTNQKTELQAIYLALQDS----GLEVNIVTDSQYALGII 508 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETTSC-EEE--E--EECSCCHHHHHHHHHHHHHHHS----CSEEEEEECCHHHHHHH
T ss_pred CCEEEEEccCCCCCCCceEEEEEEECCc-EEE--e--cCCCCCHHHHHHHHHHHHHHhC----CCcEEEEeChHHHHHHH
Confidence 4699999999999999999999997432 211 1 2357899999999999999987 47899999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhcCCcEEEEEeCC----cccHHHHHHHHHH
Q 021019 254 QGLWKINNQNLAGLCKEAKELKEKFQSFQINHILR----NLNSEADAQANMG 301 (318)
Q Consensus 254 ~~~w~~~~~~~~~l~~~i~~l~~~f~~v~~~Hv~r----~~Ne~AD~LAk~A 301 (318)
++ |...+ +.++++++...+..+..|.+.||++ ++|+.||+||++|
T Consensus 509 ~~-~~~~~--~~~l~~~~~~~l~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 509 QA-QPDKS--ESELVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp TT-CCSEE--SSHHHHHHHHHHHHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred hc-CCccC--CHHHHHHHHHHHhcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 98 54432 3356666665444455677766655 7899999999976
No 19
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=80.23 E-value=0.23 Score=47.77 Aligned_cols=74 Identities=15% Similarity=-0.039 Sum_probs=45.7
Q ss_pred eEEEEEcCcccCCCCceEEEEEEE-eCC--CcEEEEeecccC----CCcchHHHHHHHHHHHHHHHHc-CCeeEEEEcCc
Q 021019 175 SCTLEFDGASKGNPGQAGAGAVLR-AED--GSVVYRLREGVG----IATNNVAEYRALILGLKYALQK-GYKHIRVQGDS 246 (318)
Q Consensus 175 ~~~iytDGS~~~~~~~~G~Gvvi~-~~~--g~~~~~~~~~~~----~~Tnn~AEl~Ail~AL~~a~~~-g~~~v~I~tDS 246 (318)
.+.+|||+|-. |+|+++. ..+ +..+...+.... ..+..+.|+.|++.|++..... --++++|+||+
T Consensus 346 ~~~l~~DAS~~------~~gavL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~g~~~~v~tDh 419 (455)
T 1rw3_A 346 PFELFVDEKQG------YAKGVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTMGQPLVIKAPH 419 (455)
T ss_dssp TTSCEEEEEEC------SSSBEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGCSSCEEEECSS
T ss_pred cEEEEEeccCC------cceeEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcCCCcEEEEecC
Confidence 57899999752 2333443 222 233333333321 2345677999999999887542 12589999999
Q ss_pred HHHHHHHcc
Q 021019 247 KLVCMQIQG 255 (318)
Q Consensus 247 ~~vi~~l~~ 255 (318)
. +..++..
T Consensus 420 ~-~~~~l~~ 427 (455)
T 1rw3_A 420 A-VEALVKQ 427 (455)
T ss_dssp C-TTTTSSS
T ss_pred h-HHHHhCC
Confidence 7 6666654
No 20
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=73.67 E-value=8.4 Score=36.56 Aligned_cols=80 Identities=10% Similarity=-0.077 Sum_probs=48.9
Q ss_pred ceEEEEEcCcccCCCCceEEEEEEEeCCCcEEEEeec-ccCCCcchHHHHHH-HHHHHHHHHH--cC--CeeEEEEcCcH
Q 021019 174 YSCTLEFDGASKGNPGQAGAGAVLRAEDGSVVYRLRE-GVGIATNNVAEYRA-LILGLKYALQ--KG--YKHIRVQGDSK 247 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G~Gvvi~~~~g~~~~~~~~-~~~~~Tnn~AEl~A-il~AL~~a~~--~g--~~~v~I~tDS~ 247 (318)
..+.++||+|- .+++|+++...++.......- .......+.-|++| ++.||+.-.. .| ...++++||.+
T Consensus 323 ~~~~l~~das~-----~g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~G~~~~~~i~~td~~ 397 (428)
T 2zd1_B 323 KDLIAEIQKQG-----QGQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIWGKTPKFKLPIQKET 397 (428)
T ss_dssp SCCEEEEEEEE-----TTEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHHSSCCEEEESSCHHH
T ss_pred CCEEEEEecCC-----CCcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEECCCCcEECCccHHH
Confidence 46899999984 346788887666543221111 22233345567777 9999986432 23 25678899998
Q ss_pred HHHHHHcccccc
Q 021019 248 LVCMQIQGLWKI 259 (318)
Q Consensus 248 ~vi~~l~~~w~~ 259 (318)
.+.- ++..|+.
T Consensus 398 ~~~~-~~~~~q~ 408 (428)
T 2zd1_B 398 WETW-WTEYWQA 408 (428)
T ss_dssp HHHH-HHHHCCC
T ss_pred HHHH-HHhcccc
Confidence 7654 4444544
No 21
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=68.50 E-value=20 Score=31.12 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=43.7
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHcccccccchhHHHHHHHHHHHH----hcC--CcEEEEEeCC
Q 021019 215 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELK----EKF--QSFQINHILR 288 (318)
Q Consensus 215 ~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~~~w~~~~~~~~~l~~~i~~l~----~~f--~~v~~~Hv~r 288 (318)
..-..+-..++...++++.++|++.+++|.=| +..|+........|+..+...+ ..+ ..|.+.++|+
T Consensus 29 ~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFS-------tENw~Rp~~EV~~Lm~L~~~~l~~~~~~l~~~~vrvr~iGd 101 (225)
T 3ugs_B 29 KLGYSQGVKTMQKLMEVCMEENISNLSLFAFS-------TENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGD 101 (225)
T ss_dssp ----CHHHHHHHHHHHHHHHTTCCEEEEEEEE-------SGGGGSCHHHHHHHHHHHHHHHHHHHHHSTTTTEEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------ccccCCCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeC
Confidence 34456788899999999999999999999766 3467766554444444433322 222 4678888876
No 22
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=59.19 E-value=7.3 Score=34.57 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=33.7
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHcccccccchhH
Q 021019 215 ATNNVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNL 264 (318)
Q Consensus 215 ~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~~~w~~~~~~~ 264 (318)
..-..+-..++...++++.+.|++.|++|..| +..|+......
T Consensus 47 ~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFS-------tENwkRp~~EV 89 (256)
T 4h8e_A 47 IKGHYEGMQTIKKITRIASDIGVKYLTLYAFS-------TENWSRPESEV 89 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TTGGGSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc-------hhhhCCCHHHH
Confidence 34467788899999999999999999999988 34576655433
No 23
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=45.16 E-value=43 Score=26.42 Aligned_cols=54 Identities=24% Similarity=0.248 Sum_probs=34.2
Q ss_pred EEEEEEEeCCCcEEEEeecccC-CCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 192 GAGAVLRAEDGSVVYRLREGVG-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 192 G~Gvvi~~~~g~~~~~~~~~~~-~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
..|+++...+|+++.....-.. ......||..||..|+.. -...++.+.|++|.
T Consensus 25 ~VGAal~~~dG~i~~G~Nvena~~~~t~cAE~~Ai~~A~~~-G~~~~~~~~l~~~~ 79 (136)
T 1uwz_A 25 QVGAALLTKDGKVYRGCNIENAAYSMCNCAEATALFKAVSE-GDTEFQMLAVAADT 79 (136)
T ss_dssp CEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHH-TCCCEEEEEEEESC
T ss_pred CEEEEEEeCCCeEEEEeCcccCCCCCccCHHHHHHHHHHHC-CCCCeEEEEEEeCC
Confidence 5778887778876532221111 122367899999998864 23345788899874
No 24
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=43.08 E-value=40 Score=26.35 Aligned_cols=54 Identities=13% Similarity=0.067 Sum_probs=34.2
Q ss_pred eEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 191 AGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 191 ~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
...|+++...+|+++.... .........||..||..|+.. -...++.+.|++|.
T Consensus 27 f~VGAal~~~dG~i~~G~N-vE~~~~t~cAE~~Ai~~A~~~-G~~~~~~i~vv~~~ 80 (130)
T 2z3g_A 27 YSVASAALSSDGRIFTGVN-VYHFTGGPCAELVVLGTAAAA-AAGNLTCIVAIGNE 80 (130)
T ss_dssp SCEEEEEEETTSCEEEEEC-CCCTTTCCCHHHHHHHHHHHT-TCCCEEEEEEEETT
T ss_pred CCEEEEEEecCCeEEEEec-cccCCcccCHHHHHHHHHHHc-CCCceEEEEEEECC
Confidence 3567777777887654222 121223567899999998863 22345678888874
No 25
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=41.40 E-value=6.9 Score=32.20 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=19.4
Q ss_pred CCcchHHHHHHHHHHHHHHHHc
Q 021019 214 IATNNVAEYRALILGLKYALQK 235 (318)
Q Consensus 214 ~~Tnn~AEl~Ail~AL~~a~~~ 235 (318)
..|||++|++|.+.||+.+++.
T Consensus 49 ~~tnn~te~~Aei~Al~~al~~ 70 (165)
T 2lsn_A 49 IPLGNHTAQMAEIAAVEFACKK 70 (165)
T ss_dssp EEESSCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999988764
No 26
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=39.86 E-value=47 Score=26.63 Aligned_cols=56 Identities=20% Similarity=0.164 Sum_probs=35.1
Q ss_pred eEEEEEEEeCCCcEEEEeeccc-CCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcH
Q 021019 191 AGAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSK 247 (318)
Q Consensus 191 ~G~Gvvi~~~~g~~~~~~~~~~-~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~ 247 (318)
...|+++...+|+++....--. .......||..||..|+.. -...++.+.|++|..
T Consensus 36 f~VGAal~~~dG~i~~G~NvEnas~~~t~cAE~~Ai~~A~~~-G~~~l~~i~v~~~~~ 92 (146)
T 2fr5_A 36 FPVGAALLTGDGRIFSGCNIENACYPLGVCAERTAIQKAISE-GYKDFRAIAISSDLQ 92 (146)
T ss_dssp CCEEEEEEETTSCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred CCEEEEEEeCCCcEEEEEeccccCCCCCcCHHHHHHHHHHhC-CCCceEEEEEEeCCC
Confidence 3567778777887653222111 1122467899999999864 233457889998853
No 27
>3n4p_A Terminase subunit UL89 protein; nuclease, human cytomegalovirus, HCMV, herpesviru packaging, DNA binding protein; 2.15A {Human herpesvirus 5} PDB: 3n4q_A 2kn8_A*
Probab=37.66 E-value=1.3e+02 Score=26.72 Aligned_cols=73 Identities=21% Similarity=0.174 Sum_probs=35.5
Q ss_pred ceEEEEEcCcccCCCCceE--EEEEEEeCCCcEEEEeecc-----cCCCcchHHHHHHHHHHHHHHHHcCCe--eEEEEc
Q 021019 174 YSCTLEFDGASKGNPGQAG--AGAVLRAEDGSVVYRLREG-----VGIATNNVAEYRALILGLKYALQKGYK--HIRVQG 244 (318)
Q Consensus 174 ~~~~iytDGS~~~~~~~~G--~Gvvi~~~~g~~~~~~~~~-----~~~~Tnn~AEl~Ail~AL~~a~~~g~~--~v~I~t 244 (318)
..+.||+|-++-.|....| ++++.+..+.-++..+-.. .+......||..+.+.+--+++-.-++ +|.|++
T Consensus 61 ~tLYVYIDPAfT~N~~ASGTGIaavg~~~~~~Ii~GlEHfFL~~LTg~s~~~Ia~Ca~~~i~~vl~lHp~~~~vrvaVEG 140 (279)
T 3n4p_A 61 KTLYVYLDPAFTTNRKASGTGVAAVGAYRHQFLIYGLEHFFLRDLSESSEVAIAECAAHMIISVLSLHPYLDELRIAVEG 140 (279)
T ss_dssp CEEEEEEECC--------CEEEEEEEEETTEEEEEEEEEECC---CCCHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEBC
T ss_pred CeEEEEECCccccCCccccccEEEEEEecCcEEEEecHHHhHHHhcCchHHHHHHHHHHHHHHHHHhCcccceEEEEEec
Confidence 5899999999988876544 5555555543333333222 134445666666555443333322233 677887
Q ss_pred Cc
Q 021019 245 DS 246 (318)
Q Consensus 245 DS 246 (318)
.|
T Consensus 141 NS 142 (279)
T 3n4p_A 141 NT 142 (279)
T ss_dssp SS
T ss_pred Cc
Confidence 66
No 28
>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A
Probab=37.36 E-value=74 Score=27.22 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=32.4
Q ss_pred ceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcC
Q 021019 190 QAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 236 (318)
Q Consensus 190 ~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g 236 (318)
...-|.+|.|.+|.+....... .....+..|++-++.||+++.+.+
T Consensus 145 ~~~R~tFiIDp~g~Ir~~~~~~-~~~gr~~~EvLr~l~aLQ~~~~~~ 190 (219)
T 3tue_A 145 VAYRGLFIIDPHGMLRQITVND-MPVGRSVEEVLRLLEAFQFVEKHG 190 (219)
T ss_dssp EECEEEEEECTTSBEEEEEEEC-TTCCCCHHHHHHHHHHHHHHHHC-
T ss_pred eeEEEEEEECCCCeEEEEEEec-CCCCCCHHHHHHHHHHhhhHHhcC
Confidence 3445789999999764443322 234568889999999999987765
No 29
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=36.12 E-value=22 Score=31.41 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=26.6
Q ss_pred CcchHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 215 ATNNVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 215 ~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
..-..+-..++...++++.++|++.|++|.=|
T Consensus 40 ~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFS 71 (253)
T 3sgv_B 40 AFGHKAGAKSVRRAVSFAANNGIEALTLYAFS 71 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEc
Confidence 34466788899999999999999999999755
No 30
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=35.51 E-value=1.2e+02 Score=26.03 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeeEEEEcCcHHHHHHHcccccccchhHHHHHHHHHHHHhc----CCcEEEEEeCC
Q 021019 218 NVAEYRALILGLKYALQKGYKHIRVQGDSKLVCMQIQGLWKINNQNLAGLCKEAKELKEK----FQSFQINHILR 288 (318)
Q Consensus 218 n~AEl~Ail~AL~~a~~~g~~~v~I~tDS~~vi~~l~~~w~~~~~~~~~l~~~i~~l~~~----f~~v~~~Hv~r 288 (318)
..+-+.++..-++++.+.|++.|++|.=| ++.|+........|++.+...+.. -..|.+.++|+
T Consensus 29 H~~G~~~l~~i~~~c~~~GI~~lTlYaFS-------teN~kRp~~Ev~~Lm~l~~~~l~~~~~~~~~vrv~~iG~ 96 (227)
T 2vg0_A 29 YRMGAAKIAEMLRWCHEAGIELATVYLLS-------TENLQRDPDELAALIEIITDVVEEICAPANHWSVRTVGD 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEEEE-------TGGGGSCHHHHHHHHHHHHHHHHHHTCTTTCCEEEEESC
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEeec-------ccccCCCHHHHHHHHHHHHHHHHHHhccccCeEEEecCC
Confidence 45678889999999999999999999866 456766654444444444432221 24577778775
No 31
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=33.78 E-value=88 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=32.8
Q ss_pred ceEEEEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHHHHHHHcC
Q 021019 190 QAGAGAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGLKYALQKG 236 (318)
Q Consensus 190 ~~G~Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL~~a~~~g 236 (318)
.+--|++|.|.+|.+........ ..-.|..|++-++.||++..+.|
T Consensus 141 ~~~R~tFiID~~G~Ir~~~v~~~-~~grn~dEiLr~l~AlQ~~~~~~ 186 (216)
T 3sbc_A 141 VALRGLFIIDPKGVIRHITINDL-PVGRNVDEALRLVEAFQWTDKNG 186 (216)
T ss_dssp EECEEEEEECTTSBEEEEEEECT-TBCCCHHHHHHHHHHHHHHHHHC
T ss_pred ceeeEEEEECCCCeEEEEEEcCC-CCCCCHHHHHHHHHHhhhHhhcC
Confidence 34457899999997644333222 33468889999999999987765
No 32
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=25.46 E-value=2e+02 Score=25.62 Aligned_cols=29 Identities=17% Similarity=-0.019 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 218 NVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 218 n~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
..+-+.++...++++.+.|++.|++|.=|
T Consensus 81 H~~G~~~l~~iv~~c~~lGI~~LTlYaFS 109 (284)
T 2vg3_A 81 HKMGEAVVIDIACGAIELGIKWLSLYAFS 109 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 45677889999999999999999999866
No 33
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=25.05 E-value=67 Score=26.53 Aligned_cols=53 Identities=15% Similarity=-0.022 Sum_probs=27.6
Q ss_pred EEEEEEEeCCCcEEEEeeccc-C-CCcchHHHHHHHHHHHHHHHHcCCeeEEEEcC
Q 021019 192 GAGAVLRAEDGSVVYRLREGV-G-IATNNVAEYRALILGLKYALQKGYKHIRVQGD 245 (318)
Q Consensus 192 G~Gvvi~~~~g~~~~~~~~~~-~-~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tD 245 (318)
-+|++|.+ +|+++....-.. . ......||+.||..|.+..-.......++|+-
T Consensus 37 pVGAVIV~-~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvT 91 (179)
T 2nx8_A 37 PIGCVIVK-DGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVT 91 (179)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEEC
Confidence 35666655 566654322111 1 11235689999999877532222334555544
No 34
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=24.63 E-value=71 Score=25.72 Aligned_cols=52 Identities=17% Similarity=0.013 Sum_probs=27.7
Q ss_pred EEEEEEeCCCcEEEEeeccc--CCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcC
Q 021019 193 AGAVLRAEDGSVVYRLREGV--GIATNNVAEYRALILGLKYALQKGYKHIRVQGD 245 (318)
Q Consensus 193 ~Gvvi~~~~g~~~~~~~~~~--~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tD 245 (318)
+|++|.+ +|+++....-.. ...-...||+.||..|.+..-...+...++|+-
T Consensus 29 VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT 82 (159)
T 2b3j_A 29 IGAIITK-DDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVT 82 (159)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEEC
Confidence 4555555 566553322111 012235689999998877533333445666654
No 35
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=23.25 E-value=1.2e+02 Score=25.33 Aligned_cols=40 Identities=25% Similarity=0.170 Sum_probs=25.0
Q ss_pred EEEEEEeCC-CcEEEEeeccc--CCCcchHHHHHHHHHHHHHH
Q 021019 193 AGAVLRAED-GSVVYRLREGV--GIATNNVAEYRALILGLKYA 232 (318)
Q Consensus 193 ~Gvvi~~~~-g~~~~~~~~~~--~~~Tnn~AEl~Ail~AL~~a 232 (318)
+|+||.+.+ |+++....-.. ...-...||+.||..|-+.+
T Consensus 50 vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~ 92 (197)
T 2g84_A 50 FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKL 92 (197)
T ss_dssp CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHH
T ss_pred EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHc
Confidence 477777756 77765443221 12224568999999887643
No 36
>2doe_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=23.13 E-value=55 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=29.7
Q ss_pred cccccChHHHHHHhccccCCCCcceecCCCCHHHHHHHHHhc
Q 021019 17 VGIYKTLSDCQLQAGFSVRDPSLTVYKGYGLSKEAEEYLASH 58 (318)
Q Consensus 17 ~gi~~~w~~~~~~~~~~~~~~~~~~~k~f~~~~~a~~~~~~~ 58 (318)
.--|++|.+|++.+. ..+.|+...+..|=+.+++..
T Consensus 32 I~~~s~W~~~~~~i~------~Dpry~av~~~~eRe~lF~eY 67 (83)
T 2doe_A 32 LDSQSRWSKVKDKVE------SDPRYKAVDSSSMREDLFKQY 67 (83)
T ss_dssp CCTTCCHHHHHHHHT------TSTHHHHCCCHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHc------cCHHHHhcCCHHHHHHHHHHH
Confidence 345899999999998 477899999998888777643
No 37
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=22.66 E-value=1.4e+02 Score=23.56 Aligned_cols=55 Identities=27% Similarity=0.265 Sum_probs=34.6
Q ss_pred EEEEEEEeCCCcEEEEeeccc-CCCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCcH
Q 021019 192 GAGAVLRAEDGSVVYRLREGV-GIATNNVAEYRALILGLKYALQKGYKHIRVQGDSK 247 (318)
Q Consensus 192 G~Gvvi~~~~g~~~~~~~~~~-~~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS~ 247 (318)
..|+++...+|+++....--. ......-||-.||..|+.. -...++.|.|.+|..
T Consensus 34 ~VGAAll~~dG~i~~G~NvEnasy~~t~CAEr~Ai~~Avs~-G~~~~~aiav~~~~~ 89 (141)
T 2d30_A 34 QVGAALLTQDGKVYRGCNVENASYGLCNCAERTALFKAVSE-GDKEFVAIAIVADTK 89 (141)
T ss_dssp CEEEEEEETTCCEEEEECBCCSSGGGCBCHHHHHHHHHHHT-TCCCEEEEEEEESCS
T ss_pred cEEEEEEeCCCCEEEeeccccCCCCcccCHHHHHHHHHHHC-CCCceEEEEEEeCCC
Confidence 467777777887653332111 1223467899999998863 223457888998864
No 38
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=21.93 E-value=84 Score=25.72 Aligned_cols=54 Identities=15% Similarity=0.121 Sum_probs=29.8
Q ss_pred EEEEEEEeCCCcEEEEeeccc-C-CCcchHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 192 GAGAVLRAEDGSVVYRLREGV-G-IATNNVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 192 G~Gvvi~~~~g~~~~~~~~~~-~-~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
-+|++|.+ +|+++....-.. . ......||+.||..|.+..-.......++|+-.
T Consensus 44 pVGAvIV~-dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~ 99 (171)
T 1wwr_A 44 PVGAIIVK-EGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTL 99 (171)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESS
T ss_pred CEEEEEEE-CCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECC
Confidence 45666665 666653322111 1 112356899999998875433334567777553
No 39
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=21.79 E-value=71 Score=25.17 Aligned_cols=52 Identities=21% Similarity=0.124 Sum_probs=27.3
Q ss_pred EEEEEEEeCCCcEEEEeeccc-C-CCcchHHHHHHHHHHHHHHHHcCCeeEEEEc
Q 021019 192 GAGAVLRAEDGSVVYRLREGV-G-IATNNVAEYRALILGLKYALQKGYKHIRVQG 244 (318)
Q Consensus 192 G~Gvvi~~~~g~~~~~~~~~~-~-~~Tnn~AEl~Ail~AL~~a~~~g~~~v~I~t 244 (318)
-+|++|.+ +|+++....-.. . ......||..||..|.+..-....+..++|+
T Consensus 25 ~VGAviv~-~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~ 78 (144)
T 2a8n_A 25 PIGAVLVL-DGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYV 78 (144)
T ss_dssp CCEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEE
T ss_pred CEEEEEEE-CCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEE
Confidence 35666655 666653322111 1 1123568999999987643222234455554
No 40
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=21.05 E-value=97 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=22.9
Q ss_pred EEEEEEeCCCcEEEEeeccc--CCCcchHHHHHHHHHHHHHHH
Q 021019 193 AGAVLRAEDGSVVYRLREGV--GIATNNVAEYRALILGLKYAL 233 (318)
Q Consensus 193 ~Gvvi~~~~g~~~~~~~~~~--~~~Tnn~AEl~Ail~AL~~a~ 233 (318)
+|+||.+ +|+++....-.. ...-...||+.||..|.+.+.
T Consensus 48 VGAVIV~-~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~ 89 (189)
T 3dh1_A 48 VGCLMVY-NNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCR 89 (189)
T ss_dssp CEEEEEE-TTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHH
T ss_pred EEEEEEE-CCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHh
Confidence 5555554 566654432211 112235689999999877543
No 41
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=20.45 E-value=2.6e+02 Score=24.25 Aligned_cols=29 Identities=7% Similarity=-0.056 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCeeEEEEcCc
Q 021019 218 NVAEYRALILGLKYALQKGYKHIRVQGDS 246 (318)
Q Consensus 218 n~AEl~Ail~AL~~a~~~g~~~v~I~tDS 246 (318)
..+-+.++...++++.+.|++.+++|.=|
T Consensus 41 H~~G~~~l~~iv~~c~~~GI~~lTlYaFS 69 (245)
T 2d2r_A 41 HKKGVKTLKDITIWCANHKLECLTLYAFS 69 (245)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 45567889999999999999999999866
No 42
>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A
Probab=20.37 E-value=1.3e+02 Score=23.33 Aligned_cols=36 Identities=14% Similarity=0.198 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEeecccCCCcchHHHHHHHHHHH
Q 021019 194 GAVLRAEDGSVVYRLREGVGIATNNVAEYRALILGL 229 (318)
Q Consensus 194 Gvvi~~~~g~~~~~~~~~~~~~Tnn~AEl~Ail~AL 229 (318)
+.++.|.+|.+.............+..|+++++.+|
T Consensus 121 ~tflID~~G~I~~~~~~~~~~~~~~~~eil~~l~~L 156 (157)
T 4g2e_A 121 AVFVIDKEGKVRYKWVSDDPTKEPPYDEIEKVVKSL 156 (157)
T ss_dssp EEEEECTTSBEEEEEEESSTTCCCCHHHHHHHHHHT
T ss_pred eEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHh
Confidence 357889999876655443322233456777777665
Done!