BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021020
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
           Precursor From C.Elegans
          Length = 109

 Score = 30.0 bits (66), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 204 IAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQ 248
           +AK  + +  +   DR++  EEKL A   F R++ T   +++DD+
Sbjct: 33  LAKAYRALARKHHPDRVKNKEEKLLAEERF-RVIATAYETLKDDE 76


>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
           Coli At 1.86 Angstroms Resolution: Comparison With The
           Enzyme From Human Erythrocytes
 pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
 pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
          Length = 450

 Score = 28.9 bits (63), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 141 KGFFTIPQLVSRIGVIGVTVMAV-LAGFGAVNLPYSYLSLFIRE 183
            GFF +P L  R+ V+G   +AV LAG   +N   +   LF+R+
Sbjct: 158 DGFFALPALPERVAVVGAGYIAVELAGV--INGLGAKTHLFVRK 199


>pdb|3FMS|A Chain A, Crystal Structure Of Tm0439, A Gntr Transcriptional
           Regulator
          Length = 209

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 177 LSLFIREIDESEIKALERQLMQSIETCIAKKKKIILC-QMEMDRIQGSEEKLKARSFFKR 235
           +  F+ ++DE  I+       ++IET I  +   + C +   D+I GSEE L+ +     
Sbjct: 62  VGFFVTDVDEKFIR-------ETIETRIXXE---VFCLENYFDKIAGSEELLEIKGEIDD 111

Query: 236 IVGTVVRSVQDDQKEQ 251
           +  +  R + DD  E+
Sbjct: 112 VAASAAREIFDDSDER 127


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.140    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,628,005
Number of Sequences: 62578
Number of extensions: 252150
Number of successful extensions: 770
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 15
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)