Query 021020
Match_columns 318
No_of_seqs 127 out of 161
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:58:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021020.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021020hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2417 Predicted G-protein co 100.0 2.9E-95 6E-100 686.5 27.1 311 5-317 4-315 (462)
2 PF12537 DUF3735: Protein of u 99.9 4.3E-27 9.4E-32 180.0 4.0 71 141-211 1-72 (72)
3 PF04791 LMBR1: LMBR1-like mem 97.0 0.1 2.2E-06 52.7 20.0 157 18-180 7-192 (471)
4 PRK11546 zraP zinc resistance 93.1 0.82 1.8E-05 39.6 9.1 34 248-284 86-119 (143)
5 PF11712 Vma12: Endoplasmic re 82.0 5 0.00011 34.3 6.6 49 12-64 84-132 (142)
6 TIGR02338 gimC_beta prefoldin, 68.9 56 0.0012 26.5 9.2 91 192-282 11-105 (110)
7 PF05082 Rop-like: Rop-like; 68.1 12 0.00026 28.4 4.5 29 251-279 2-30 (66)
8 KOG3231 Predicted assembly/vac 68.0 45 0.00097 29.8 8.8 31 254-284 39-74 (208)
9 KOG2019 Metalloendoprotease HM 67.1 22 0.00047 38.6 7.8 107 163-276 353-478 (998)
10 KOG0971 Microtubule-associated 63.5 54 0.0012 36.5 10.0 38 251-288 1092-1129(1243)
11 PF01920 Prefoldin_2: Prefoldi 63.5 70 0.0015 25.0 10.2 30 251-280 69-98 (106)
12 PRK10803 tol-pal system protei 62.1 66 0.0014 30.3 9.5 65 186-279 39-103 (263)
13 COG3074 Uncharacterized protei 61.8 29 0.00062 26.7 5.5 49 251-299 18-74 (79)
14 PF04156 IncA: IncA protein; 61.4 1.1E+02 0.0025 26.7 10.6 24 188-211 82-105 (191)
15 PF10805 DUF2730: Protein of u 61.0 81 0.0017 25.6 8.7 31 181-218 29-59 (106)
16 PRK11637 AmiB activator; Provi 59.5 96 0.0021 31.1 10.7 32 185-216 45-76 (428)
17 PF13801 Metal_resist: Heavy-m 57.0 92 0.002 24.3 8.8 34 182-215 40-73 (125)
18 PF08317 Spc7: Spc7 kinetochor 55.1 1.2E+02 0.0025 29.5 10.2 33 185-217 207-239 (325)
19 PF14389 Lzipper-MIP1: Leucine 53.8 80 0.0017 24.9 7.3 25 251-275 61-85 (88)
20 PF01486 K-box: K-box region; 51.9 83 0.0018 25.0 7.2 28 183-210 45-72 (100)
21 PRK09039 hypothetical protein; 50.7 1.6E+02 0.0034 29.0 10.3 17 77-93 15-31 (343)
22 COG1579 Zn-ribbon protein, pos 50.5 2.2E+02 0.0047 26.8 10.7 87 187-284 31-122 (239)
23 PRK09343 prefoldin subunit bet 47.7 1.3E+02 0.0028 25.0 8.0 37 251-287 78-114 (121)
24 COG4942 Membrane-bound metallo 46.6 2E+02 0.0043 29.4 10.4 19 194-212 38-56 (420)
25 PF04111 APG6: Autophagy prote 45.4 2.6E+02 0.0056 27.2 10.8 28 251-278 78-105 (314)
26 PF14077 WD40_alt: Alternative 45.3 27 0.00059 24.6 2.9 22 251-272 18-39 (48)
27 cd00632 Prefoldin_beta Prefold 44.9 1.6E+02 0.0035 23.5 9.2 89 194-282 9-101 (105)
28 PF07106 TBPIP: Tat binding pr 44.1 2.1E+02 0.0046 24.7 9.4 31 184-214 69-99 (169)
29 KOG0709 CREB/ATF family transc 44.0 1.3E+02 0.0028 31.0 8.7 53 252-304 287-339 (472)
30 KOG3584 cAMP response element 42.1 47 0.001 32.2 4.9 33 250-282 311-343 (348)
31 PF11932 DUF3450: Protein of u 41.8 2.9E+02 0.0062 25.6 10.6 31 249-279 82-112 (251)
32 PF06005 DUF904: Protein of un 41.4 94 0.002 23.7 5.7 49 251-299 18-67 (72)
33 PF00170 bZIP_1: bZIP transcri 40.4 1.1E+02 0.0025 22.1 5.9 34 251-284 26-59 (64)
34 KOG0250 DNA repair protein RAD 40.0 2.7E+02 0.0058 31.7 10.9 36 250-285 400-435 (1074)
35 PF15190 DUF4583: Domain of un 38.1 1.6E+02 0.0035 24.9 7.0 47 80-129 63-110 (128)
36 PRK15396 murein lipoprotein; P 38.1 1.2E+02 0.0026 23.7 5.8 32 187-218 32-63 (78)
37 KOG0994 Extracellular matrix g 36.7 1.9E+02 0.0042 33.4 9.1 29 251-279 1267-1295(1758)
38 PRK15422 septal ring assembly 36.4 1.2E+02 0.0027 23.7 5.6 27 251-277 18-44 (79)
39 PRK10869 recombination and rep 36.2 2.2E+02 0.0048 29.8 9.4 31 250-280 340-370 (553)
40 PF12794 MscS_TM: Mechanosensi 36.0 4.2E+02 0.0092 25.8 13.8 83 18-105 62-149 (340)
41 PRK09973 putative outer membra 35.9 1.3E+02 0.0029 23.8 5.8 52 156-218 8-62 (85)
42 COG3883 Uncharacterized protei 35.6 4E+02 0.0088 25.5 10.8 16 250-265 79-94 (265)
43 COG1480 Predicted membrane-ass 35.2 6.2E+02 0.014 27.6 13.2 38 25-62 290-327 (700)
44 PF11570 E2R135: Coiled-coil r 35.2 2.8E+02 0.0062 23.8 8.0 34 186-219 21-54 (136)
45 COG4942 Membrane-bound metallo 35.0 2.7E+02 0.0059 28.4 9.3 28 251-278 161-188 (420)
46 KOG1691 emp24/gp25L/p24 family 34.7 1.2E+02 0.0026 28.0 6.2 47 249-295 132-179 (210)
47 PF05508 Ran-binding: RanGTP-b 34.6 1.6E+02 0.0034 28.8 7.3 43 146-189 1-44 (302)
48 PRK10884 SH3 domain-containing 33.6 3.8E+02 0.0081 24.5 10.9 16 289-304 174-189 (206)
49 PF12507 HCMV_UL139: Human Cyt 33.1 35 0.00077 28.7 2.3 43 254-296 47-89 (121)
50 PF08657 DASH_Spc34: DASH comp 31.5 2.7E+02 0.0058 26.5 8.3 78 187-270 180-258 (259)
51 PF04799 Fzo_mitofusin: fzo-li 31.3 1.4E+02 0.0031 26.7 6.0 35 250-284 126-163 (171)
52 COG1377 FlhB Flagellar biosynt 31.2 5.5E+02 0.012 25.7 12.2 73 115-190 153-228 (363)
53 PF09726 Macoilin: Transmembra 30.9 5.3E+02 0.012 28.0 11.3 55 2-62 36-90 (697)
54 PF08232 Striatin: Striatin fa 30.2 1.4E+02 0.003 25.4 5.5 40 251-290 32-73 (134)
55 TIGR00437 feoB ferrous iron tr 29.7 1.9E+02 0.0041 30.6 7.6 27 144-170 341-367 (591)
56 PF13314 DUF4083: Domain of un 29.5 54 0.0012 24.2 2.5 45 148-203 5-55 (58)
57 smart00338 BRLZ basic region l 29.4 2E+02 0.0044 20.8 5.7 33 251-283 26-58 (65)
58 COG4299 Uncharacterized protei 29.1 1.1E+02 0.0023 29.9 5.1 57 77-133 103-161 (371)
59 KOG3599 Ca2+-modulated nonsele 29.0 8.3E+02 0.018 27.1 21.4 102 5-106 500-617 (798)
60 PF12325 TMF_TATA_bd: TATA ele 29.0 1.7E+02 0.0037 24.6 5.8 36 249-284 28-63 (120)
61 COG3763 Uncharacterized protei 28.7 1.1E+02 0.0023 23.5 4.0 28 11-39 8-35 (71)
62 PF14048 MBD_C: C-terminal dom 28.4 72 0.0016 25.8 3.3 16 184-199 73-88 (96)
63 PRK10803 tol-pal system protei 28.2 2E+02 0.0044 27.1 6.9 32 251-282 61-92 (263)
64 PF05377 FlaC_arch: Flagella a 28.1 1.9E+02 0.0042 21.1 5.2 31 254-284 3-33 (55)
65 smart00787 Spc7 Spc7 kinetocho 27.0 5.8E+02 0.013 24.8 9.9 33 185-217 202-234 (312)
66 PF14854 LURAP: Leucine rich a 26.9 1.8E+02 0.0039 24.5 5.4 38 248-285 19-56 (121)
67 COG5062 Uncharacterized membra 26.1 2.5E+02 0.0054 28.3 7.1 49 117-165 69-131 (429)
68 PF11286 DUF3087: Protein of u 25.9 2.1E+02 0.0046 25.5 6.1 46 35-82 10-55 (165)
69 COG1704 LemA Uncharacterized c 25.8 4.2E+02 0.0091 24.1 8.0 32 251-282 118-152 (185)
70 TIGR03042 PS_II_psbQ_bact phot 25.6 4.4E+02 0.0096 22.8 9.6 23 257-279 91-113 (142)
71 PRK12907 secY preprotein trans 25.6 2.5E+02 0.0054 28.6 7.4 91 81-171 272-386 (434)
72 PF12325 TMF_TATA_bd: TATA ele 25.4 1.2E+02 0.0027 25.4 4.3 31 186-216 74-104 (120)
73 PF07438 DUF1514: Protein of u 25.0 2.3E+02 0.0051 21.4 5.2 23 254-276 21-43 (66)
74 PRK12417 secY preprotein trans 24.9 2.5E+02 0.0053 28.4 7.2 90 81-170 240-357 (404)
75 PF07139 DUF1387: Protein of u 24.9 2.3E+02 0.0049 27.7 6.6 24 180-203 171-194 (302)
76 PF08134 cIII: cIII protein fa 24.4 1.4E+02 0.003 20.5 3.6 24 184-213 17-40 (44)
77 PF05529 Bap31: B-cell recepto 24.3 4.3E+02 0.0094 23.2 8.0 14 249-262 159-172 (192)
78 PF05600 DUF773: Protein of un 24.3 2.7E+02 0.0059 28.9 7.5 48 251-299 460-507 (507)
79 KOG0994 Extracellular matrix g 24.2 1.2E+02 0.0027 34.9 5.1 32 185-216 1420-1451(1758)
80 CHL00161 secY preprotein trans 23.9 2.7E+02 0.0058 28.1 7.2 94 81-174 256-375 (417)
81 PF09323 DUF1980: Domain of un 23.8 2.5E+02 0.0054 24.7 6.3 17 55-71 40-56 (182)
82 PRK15422 septal ring assembly 23.5 3.7E+02 0.008 21.1 8.3 26 189-214 6-31 (79)
83 COG0598 CorA Mg2+ and Co2+ tra 23.4 6.6E+02 0.014 24.1 9.6 55 252-306 228-283 (322)
84 PF14895 PPPI_inhib: Protein p 23.3 5.5E+02 0.012 25.6 9.0 103 177-310 70-186 (347)
85 PF00846 Hanta_nucleocap: Hant 23.1 4.8E+02 0.01 26.5 8.5 31 188-218 3-33 (428)
86 KOG3088 Secretory carrier memb 22.9 1.8E+02 0.0039 28.3 5.4 55 165-219 33-92 (313)
87 PRK00888 ftsB cell division pr 22.9 1.8E+02 0.0039 23.6 4.8 30 250-279 33-62 (105)
88 TIGR02231 conserved hypothetic 22.9 6E+02 0.013 26.1 9.7 35 251-285 138-172 (525)
89 PF04977 DivIC: Septum formati 22.8 1.6E+02 0.0036 21.6 4.3 27 251-277 24-50 (80)
90 PF14965 BRI3BP: Negative regu 22.6 5.7E+02 0.012 23.0 12.0 131 46-198 34-170 (177)
91 PF06570 DUF1129: Protein of u 22.6 5.6E+02 0.012 22.9 13.8 32 69-100 138-169 (206)
92 PRK10361 DNA recombination pro 22.1 5.7E+02 0.012 26.5 9.2 33 251-283 165-197 (475)
93 KOG1937 Uncharacterized conser 22.0 3.8E+02 0.0081 27.8 7.6 37 250-286 351-387 (521)
94 PF09798 LCD1: DNA damage chec 21.8 1.8E+02 0.0039 31.4 5.7 36 249-284 31-66 (654)
95 PF07637 PSD5: Protein of unkn 21.6 1.1E+02 0.0023 22.5 2.9 21 179-199 14-34 (64)
96 COG1382 GimC Prefoldin, chaper 21.6 4.9E+02 0.011 21.9 8.8 36 251-286 77-112 (119)
97 PF07787 DUF1625: Protein of u 21.5 1.2E+02 0.0027 28.0 4.0 38 280-317 174-211 (248)
98 PF07716 bZIP_2: Basic region 21.3 2.9E+02 0.0063 19.3 5.0 29 251-279 25-53 (54)
99 PF09730 BicD: Microtubule-ass 21.2 5.4E+02 0.012 28.2 9.2 34 182-215 578-611 (717)
100 PF11137 DUF2909: Protein of u 21.0 3.6E+02 0.0079 20.1 5.7 47 44-92 7-53 (63)
101 KOG2577 Transcription factor E 20.6 2.6E+02 0.0055 27.9 6.1 30 249-278 142-171 (354)
102 PF12548 DUF3740: Sulfatase pr 20.4 1.2E+02 0.0025 26.4 3.3 22 250-271 112-133 (145)
103 TIGR03545 conserved hypothetic 20.4 6.5E+02 0.014 26.6 9.4 32 251-282 219-254 (555)
104 KOG4643 Uncharacterized coiled 20.4 3.7E+02 0.0079 30.7 7.7 29 146-175 138-166 (1195)
105 PF10168 Nup88: Nuclear pore c 20.2 7.2E+02 0.016 27.1 9.9 31 254-284 635-665 (717)
106 PF14723 SSFA2_C: Sperm-specif 20.0 6.5E+02 0.014 22.7 8.6 26 257-282 144-169 (179)
No 1
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-95 Score=686.52 Aligned_cols=311 Identities=53% Similarity=0.888 Sum_probs=292.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHhHHH
Q 021020 5 IAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLFC 84 (318)
Q Consensus 5 ~~~~~~~~~~~s~~~ff~~g~~ff~~~l~~~Y~~~~~~~~~~Fs~tfalS~~l~eLil~EI~~~~~~~~r~~~w~~~l~~ 84 (318)
|...|+.++.+|+.+||.+||+|+.|+|||+||+||+.+|++||.|||+||+++|||+|||.|++++++|..+|+.++.+
T Consensus 4 ~~~~d~~vv~~Sl~lff~~gw~f~~k~lfk~ye~~~~~Vq~Ifs~tfa~sc~lfeliifeii~vl~~~sr~~~w~~~l~~ 83 (462)
T KOG2417|consen 4 WDIYDAWVVIGSLILFFAAGWLFYNKQLFKNYEVHNRVVQFIFSVTFAFSCSLFELIIFEIIDVLSPESRMFCWKVCLSL 83 (462)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeehhHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHhHHH
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHhCCccCCCCCCCccccccchhhheehhhHHHHHHh
Q 021020 85 LILLLVFMLPYYHCYLMLCNSGVRKERAALGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVL 164 (318)
Q Consensus 85 Ll~llivviP~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~f~~~G~~~p~~~~~~g~~~~~~~l~RigViGVtlmAiL 164 (318)
+++++++++|+|+||+++++.+++++++.++++.+|..++|+|||+|||||+|+++||++++||.++||||||||+||+|
T Consensus 84 ill~lv~~ip~Y~~y~ii~~i~v~~k~~~~~s~l~w~~FlYffWkiGdpFPmlSakhGiftieQliSRvgVIGVTlMAvL 163 (462)
T KOG2417|consen 84 ILLTLVFMIPYYHCYLIIRNIGVRRKLALPFTILFWFIFLYFFWKIGDPFPMLSAKHGIFTIEQLISRVGVIGVTLMAVL 163 (462)
T ss_pred HHHHHHHHHHHHhheeeeecccchHHHHhHHHHHHHHHHHHHHHHhCCCCCCCCcccceeeHHHHHhhhhhhhhhHHHHH
Confidence 99999999999999999999888888889999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceecc-
Q 021020 165 AGFGAVNLPYSYLSLFIREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRS- 243 (318)
Q Consensus 165 SGfgaVstPy~~~~~f~rpVt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s- 243 (318)
|||||||+||+|+++|.|||+|.||.++||||.||+||+.+||||++.++-+ .+...+++.++.++++.|.+| ++++
T Consensus 164 SGFGAVN~PYsyms~FiR~Vee~di~~lErrL~qtmdmiisKKkk~a~~~l~-~~~l~~e~~~k~pSff~r~w~-~~~~~ 241 (462)
T KOG2417|consen 164 SGFGAVNAPYSYMSYFIRPVEETDIIQLERRLAQTMDMIISKKKKMAMAQLE-EKRLQSEKVQKEPSFFRRFWG-MFSSS 241 (462)
T ss_pred hccCccCCchhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhcccCCcHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999988743 222333345666788777775 5554
Q ss_pred ccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHhhhHHHHHHHHHHHHHHhhc
Q 021020 244 VQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKVWLSF 317 (318)
Q Consensus 244 ~~~~~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyRI~~stini 317 (318)
.++++.++||+.||+|+++||+++||||+|+.||+++++|+++|||++|+++|++||+||+||||||++|++||
T Consensus 242 ~~~~~~~~~i~~lq~EV~~LEeLsrqLFLE~~eLr~~ker~~~SkTfkG~yfN~LG~ffSiYCvwKif~s~inI 315 (462)
T KOG2417|consen 242 VQDNTLSSDIKLLQQEVEPLEELSRQLFLELVELRQMKERVAFSKTFKGKYFNVLGHFFSIYCVWKIFMSLINI 315 (462)
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhHhhhhHhHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999999999999999999999999999999999999999999999997
No 2
>PF12537 DUF3735: Protein of unknown function (DUF3735); InterPro: IPR022535 This conserved domain is found in a subunit of a voltage dependent anion channel required for acidification and functions of the Golgi apparatus; it may function in counter-ion conductance. It belongs to the Golgi pH regulator (1.A.38 from TC) family
Probab=99.93 E-value=4.3e-27 Score=179.98 Aligned_cols=71 Identities=51% Similarity=0.880 Sum_probs=68.4
Q ss_pred CccccccchhhheehhhHHHHHHhhhcccccccccccccccccCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 141 KGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREID-ESEIKALERQLMQSIETCIAKKKKII 211 (318)
Q Consensus 141 ~g~~~~~~~l~RigViGVtlmAiLSGfgaVstPy~~~~~f~rpVt-~~dI~~~e~~l~~t~~~l~~Kk~rl~ 211 (318)
||++++|++++||||+|||+||+|||||||||||+++++|+|||+ |.||+++|++++||.|+|.+||+|++
T Consensus 1 ~~~~~~~~~l~ri~ViGVt~mAiLSG~gaVstpy~~~~~~~~~v~~~~~i~~~~~~l~~t~~~l~~Kk~~l~ 72 (72)
T PF12537_consen 1 HGFFYIENVLSRIGVIGVTLMAILSGFGAVSTPYYYFSYFRRPVSRESDINNAERRLWHTRDMLVEKKKRLA 72 (72)
T ss_pred CceehHHHHHHHHHHHHHHHHHHHhhhhHHccHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567899999999999999999999999999999999999999999 99999999999999999999999874
No 3
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=96.99 E-value=0.1 Score=52.65 Aligned_cols=157 Identities=16% Similarity=0.268 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHhh--hhHHH--HHHHHHHHHHHHHHHHHHHHHhc--------------ccccchhhhhhH
Q 021020 18 ILLGWAGLWFLNIRLYKEYEEK--RALVQ--IIFSVVFAFSCNLLQLVLFEIIP--------------ILSKEARVVNWK 79 (318)
Q Consensus 18 ~~ff~~g~~ff~~~l~~~Y~~~--~~~~~--~~Fs~tfalS~~l~eLil~EI~~--------------~~~~~~r~~~w~ 79 (318)
++.+++.+++..+.- +.+.+ +..+. ..|+.+++++.+ -|+=.++.. ..+.+.-...|+
T Consensus 7 ~~l~~~~~~~l~~y~--~~~~~~~~~~~~~~~~~~~~~~~~~v--lllP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 82 (471)
T PF04791_consen 7 IILLLIAIYLLRRYQ--HPDDSNTSWFVKIIVFLGLTLSFSIV--LLLPLDVANNEILSSYDSSYPGQWLNTSLMEVLWY 82 (471)
T ss_pred HHHHHHHHHHHHHhc--CchhcCCchhHHHHHHHHHHHHHHHH--HhcChhhhcccccccCCCCCCcccCCchHHHHHHH
Confidence 334445555444433 23333 34444 344555444443 355566666 122334555799
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhccCcchh---hHH--------HHHHHHHHHHHHHHHHhCCccCCCCCCCccccccc
Q 021020 80 VDLFCLILLLVFMLPYYHCYLMLCNSGVRKE---RAA--------LGAILFLLAFLYAFWRMGIHFPMPSPEKGFFTIPQ 148 (318)
Q Consensus 80 ~~l~~Ll~llivviP~~~~~~l~~~~~~~~~---~~~--------~~~~~~~~~~l~~f~~~G~~~p~~~~~~g~~~~~~ 148 (318)
..-....++.-+++|+.+.|.=...+....+ ++. +...+..+.++++...++.+. ...........=
T Consensus 83 ~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~~~i~~~~~~~~~~~~d~~~--~~~~~~~~~~~~ 160 (471)
T PF04791_consen 83 IIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIFAIIVGILLIYLLAILDYSE--STLSSFSSLLPF 160 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHhhHHHHHHH
Confidence 9999999999999999999987655422111 111 111112222222222211100 000000000112
Q ss_pred hhhheehhhHHHHHHhhhcccccccccccccc
Q 021020 149 LVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLF 180 (318)
Q Consensus 149 ~l~RigViGVtlmAiLSGfgaVstPy~~~~~f 180 (318)
+++=....|..+..++-|+|=|.-|-.....+
T Consensus 161 ~ial~~~~Gl~l~i~~~g~Glv~iP~~l~~~~ 192 (471)
T PF04791_consen 161 LIALSNFWGLFLFIILLGYGLVAIPRDLWRSS 192 (471)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHhc
Confidence 45556789999999999999999998866543
No 4
>PRK11546 zraP zinc resistance protein; Provisional
Probab=93.08 E-value=0.82 Score=39.62 Aligned_cols=34 Identities=18% Similarity=0.099 Sum_probs=24.2
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 248 ~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
++++.|++|..||..|.. +|+.+=.+++.+.+++
T Consensus 86 pD~~kI~aL~kEI~~Lr~---kL~e~r~~~~~~~~k~ 119 (143)
T PRK11546 86 PDSSKINAVAKEMENLRQ---SLDELRVKRDIAMAEA 119 (143)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 555679999999987765 6776666666665554
No 5
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=82.05 E-value=5 Score=34.28 Aligned_cols=49 Identities=12% Similarity=0.174 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 12 VVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFE 64 (318)
Q Consensus 12 ~~~~s~~~ff~~g~~ff~~~l~~~Y~~~~~~~~~~Fs~tfalS~~l~eLil~E 64 (318)
=++.|.+..|++||++-.... ...+...++++|+.+|+-+...|++++=
T Consensus 84 Nilvsv~~~~~~~~~~~~~~~----~~~~~~~Rvllgl~~al~vlvAEv~l~~ 132 (142)
T PF11712_consen 84 NILVSVFAVFFAGWYWAGYSF----GGWSFPYRVLLGLFGALLVLVAEVVLYI 132 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999998877555 1235557899999999999999998874
No 6
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=68.94 E-value=56 Score=26.52 Aligned_cols=91 Identities=16% Similarity=0.241 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccC----CchhhhHHHHHHHHHHHHHHH
Q 021020 192 LERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELS 267 (318)
Q Consensus 192 ~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~----~~~~~~i~~L~~EI~~Le~l~ 267 (318)
.-+++.+.++.+.+++..+....++.......=..-+.+.-+.+.+|+.+-.-+. ..-...+..++.+|..|+.-.
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~ 90 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQE 90 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555566666555444433222111001122234445555543322110 011245666666777777777
Q ss_pred HHHHHHHHHHHHHHH
Q 021020 268 KQLFLEIYELRQAKE 282 (318)
Q Consensus 268 ~~L~~el~el~~~~~ 282 (318)
..+-.++.+++...+
T Consensus 91 ~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 91 ERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777665443
No 7
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=68.10 E-value=12 Score=28.35 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
+++.+|+.||.-|.....++-.|||+|-.
T Consensus 2 ~d~~eLk~evkKL~~~A~~~kmdLHDLaE 30 (66)
T PF05082_consen 2 SDIEELKKEVKKLNRKATQAKMDLHDLAE 30 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999854
No 8
>KOG3231 consensus Predicted assembly/vacuolar sorting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.00 E-value=45 Score=29.85 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 021020 254 KIMEAEVQALEE-----LSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 254 ~~L~~EI~~Le~-----l~~~L~~el~el~~~~~r~ 284 (318)
++|++||.-+-. -.+.|..+|+++|.++.|.
T Consensus 39 k~LElEIkk~Aa~GnndAcr~LAKQLV~lRkQKtrt 74 (208)
T KOG3231|consen 39 KQLELEIKKMAAIGNNDACRVLAKQLVHLRKQKTRT 74 (208)
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhhhhh
Confidence 455666655543 3677888888888765543
No 9
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=67.14 E-value=22 Score=38.56 Aligned_cols=107 Identities=18% Similarity=0.325 Sum_probs=62.2
Q ss_pred Hhhhcc---cccccccc------cccccccCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhhhhcchhhhccc
Q 021020 163 VLAGFG---AVNLPYSY------LSLFIREIDESEIKALERQLMQSIETCIAKK---KKIILCQMEMDRIQGSEEKLKAR 230 (318)
Q Consensus 163 iLSGfg---aVstPy~~------~~~f~rpVt~~dI~~~e~~l~~t~~~l~~Kk---~rl~~~~~~~~~~~~~~~~~~~~ 230 (318)
+=||.| +||+-|.- |+.=.+-|+|.||+..|.-.+.|.+.++.++ +|++..-.+++-+... ++.
T Consensus 353 iESGLGtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~----qst 428 (998)
T KOG2019|consen 353 IESGLGTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKH----QST 428 (998)
T ss_pred HHcCCCcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhc----ccc
Confidence 348888 78887764 3334678999999999999999999998865 3444433333322111 122
Q ss_pred cchheeecceeccccCCch-------hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 231 SFFKRIVGTVVRSVQDDQK-------EQDIKIMEAEVQALEELSKQLFLEIYE 276 (318)
Q Consensus 231 ~~~~~v~~~s~~s~~~~~~-------~~~i~~L~~EI~~Le~l~~~L~~el~e 276 (318)
++--.++.++...|..+.+ +++++.+++.++. =+..+|.++.+
T Consensus 429 ~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~e---k~~~lfq~lIk 478 (998)
T KOG2019|consen 429 GFGLSLMQSIISKWINDMDPFEPLKFEEQLKKLKQRLAE---KSKKLFQPLIK 478 (998)
T ss_pred chhHHHHHHHhhhhccCCCccchhhhhhHHHHHHHHHhh---hchhHHHHHHH
Confidence 2211122224444532222 3677777776553 25566666554
No 10
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.47 E-value=54 Score=36.54 Aligned_cols=38 Identities=21% Similarity=0.148 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSR 288 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s~ 288 (318)
.+.--|.+||+.|..-.+|.-.+-.+|+...-|+..+.
T Consensus 1092 g~~p~l~~qin~l~na~~qer~er~~Lkg~~mra~~aa 1129 (1243)
T KOG0971|consen 1092 GDSPLLLQQINALRNAISQERHERSILKGAQMRASLAA 1129 (1243)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhc
Confidence 34456788899998888888889999988777776543
No 11
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=63.47 E-value=70 Score=24.99 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=21.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~ 280 (318)
+++..++.||+.|+.-...+-.++.+++..
T Consensus 69 ~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~ 98 (106)
T PF01920_consen 69 ERIEKLEKEIKKLEKQLKYLEKKLKELKKK 98 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777776643
No 12
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=62.10 E-value=66 Score=30.32 Aligned_cols=65 Identities=22% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccCCchhhhHHHHHHHHHHHHH
Q 021020 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEE 265 (318)
Q Consensus 186 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i~~L~~EI~~Le~ 265 (318)
+..+.++|+.++.-...+.+=-.||+.++++.++ +| .++.+++-|++.+.+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~---------------------Lr--------G~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDS---------------------LR--------GQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH---------------------Hh--------hHHHHHHHHHHHHHH
Confidence 5557777777765544444444556665554321 11 145677889999999
Q ss_pred HHHHHHHHHHHHHH
Q 021020 266 LSKQLFLEIYELRQ 279 (318)
Q Consensus 266 l~~~L~~el~el~~ 279 (318)
=.+++|.|+.+...
T Consensus 90 rq~~~y~dld~r~~ 103 (263)
T PRK10803 90 RQKQIYLQIDSLSS 103 (263)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998654
No 13
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.76 E-value=29 Score=26.67 Aligned_cols=49 Identities=24% Similarity=0.508 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--------CCchhhHHHHHhh
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY--------SRTWRGHMQNLLG 299 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~--------s~T~~Gr~~~~~g 299 (318)
+-|.-|++||+.|++=.++|-.|..+++..+++-++ -+-|.-|+-.++|
T Consensus 18 dTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 18 DTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347789999999999999999998877754433221 3455566555555
No 14
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=61.36 E-value=1.1e+02 Score=26.72 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 188 EIKALERQLMQSIETCIAKKKKII 211 (318)
Q Consensus 188 dI~~~e~~l~~t~~~l~~Kk~rl~ 211 (318)
|+...++++.+..+.+.+-.+++.
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~ 105 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQ 105 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444333333
No 15
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=61.05 E-value=81 Score=25.65 Aligned_cols=31 Identities=13% Similarity=0.294 Sum_probs=21.2
Q ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021020 181 IREIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (318)
Q Consensus 181 ~rpVt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (318)
.+.++.+|+..+++++.+ ..+|+...|.+++
T Consensus 29 ~~~a~~~~~~~l~~~~~~-------~~~Rl~~lE~~l~ 59 (106)
T PF10805_consen 29 RTYAKREDIEKLEERLDE-------HDRRLQALETKLE 59 (106)
T ss_pred HhhccHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 356778899988866654 3457777776654
No 16
>PRK11637 AmiB activator; Provisional
Probab=59.51 E-value=96 Score=31.09 Aligned_cols=32 Identities=3% Similarity=0.177 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021020 185 DESEIKALERQLMQSIETCIAKKKKIILCQME 216 (318)
Q Consensus 185 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (318)
.+.++.+.++++....+.+.+.++++..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~ 76 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQ 76 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777766666555555444443
No 17
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=56.96 E-value=92 Score=24.27 Aligned_cols=34 Identities=6% Similarity=0.031 Sum_probs=18.2
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQM 215 (318)
Q Consensus 182 rpVt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~ 215 (318)
...|+.+-..+++-.+...+....-|.++.....
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~ 73 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQ 73 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677877776666665555444444444444333
No 18
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=55.12 E-value=1.2e+02 Score=29.49 Aligned_cols=33 Identities=36% Similarity=0.456 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021020 185 DESEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (318)
Q Consensus 185 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 217 (318)
+..+++.+.+++......+.+||++++.++.+.
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el 239 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEEL 239 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444567777777777777777777776666543
No 19
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=53.82 E-value=80 Score=24.90 Aligned_cols=25 Identities=32% Similarity=0.624 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIY 275 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~ 275 (318)
+||+.|+.||.-||.=-.+|+.++.
T Consensus 61 ~EIA~lE~eV~~LE~~v~~L~~~l~ 85 (88)
T PF14389_consen 61 EEIALLEAEVAKLEQKVLSLYRQLF 85 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777765555555543
No 20
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.95 E-value=83 Score=24.98 Aligned_cols=28 Identities=21% Similarity=0.439 Sum_probs=19.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 183 EIDESEIKALERQLMQSIETCIAKKKKI 210 (318)
Q Consensus 183 pVt~~dI~~~e~~l~~t~~~l~~Kk~rl 210 (318)
+.+-.|+..+|++++.++.-+.+||.++
T Consensus 45 ~Ls~~eL~~LE~~Le~aL~~VR~rK~~~ 72 (100)
T PF01486_consen 45 SLSLKELQQLEQQLESALKRVRSRKDQL 72 (100)
T ss_pred ccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3455667777888877777777766654
No 21
>PRK09039 hypothetical protein; Validated
Probab=50.70 E-value=1.6e+02 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=9.1
Q ss_pred hhHHhHHHHHHHHHHHH
Q 021020 77 NWKVDLFCLILLLVFML 93 (318)
Q Consensus 77 ~w~~~l~~Ll~llivvi 93 (318)
+||=-+.+|.-+|.|++
T Consensus 15 ~wpg~vd~~~~ll~~~~ 31 (343)
T PRK09039 15 YWPGFVDALSTLLLVIM 31 (343)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 56665555555444444
No 22
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=50.49 E-value=2.2e+02 Score=26.83 Aligned_cols=87 Identities=16% Similarity=0.163 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-----hhhhccccchheeecceeccccCCchhhhHHHHHHHHH
Q 021020 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGS-----EEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQ 261 (318)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i~~L~~EI~ 261 (318)
.++..++..+....+.+.++..++..++.+..+.... +.......-+ +..+++.+.++|+.|++
T Consensus 31 ~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl-----------~~v~~~~e~~aL~~E~~ 99 (239)
T COG1579 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----------SAVKDERELRALNIEIQ 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hccccHHHHHHHHHHHH
Confidence 3566666666666666666665555555433221000 0000000101 11245567888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021020 262 ALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 262 ~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.++.=.+++-.|+.++..+++..
T Consensus 100 ~ak~r~~~le~el~~l~~~~~~l 122 (239)
T COG1579 100 IAKERINSLEDELAELMEEIEKL 122 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887665543
No 23
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.73 E-value=1.3e+02 Score=25.04 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYS 287 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s 287 (318)
+.+..++.+|..||.=...+-..+.++++..+....+
T Consensus 78 ~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 78 ERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566777888888888888888888888766665443
No 24
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=46.57 E-value=2e+02 Score=29.38 Aligned_cols=19 Identities=37% Similarity=0.228 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021020 194 RQLMQSIETCIAKKKKIIL 212 (318)
Q Consensus 194 ~~l~~t~~~l~~Kk~rl~~ 212 (318)
++++++...|.++.+++..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~ 56 (420)
T COG4942 38 KQLKQIQKEIAALEKKIRE 56 (420)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555555555444444443
No 25
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=45.41 E-value=2.6e+02 Score=27.15 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~ 278 (318)
+++.+|+.|.+.|++.+.+...+..+++
T Consensus 78 ~el~~le~e~~~l~~eE~~~~~~~n~~~ 105 (314)
T PF04111_consen 78 QELEELEEELEELDEEEEEYWREYNELQ 105 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555555555444444
No 26
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=45.34 E-value=27 Score=24.57 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=19.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFL 272 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~ 272 (318)
...++|+.|+..|..+.+.||.
T Consensus 18 vrv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 18 VRVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eeHHHHHHHHHHHHHHhHHHHh
Confidence 4578999999999999999985
No 27
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=44.86 E-value=1.6e+02 Score=23.52 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccC----CchhhhHHHHHHHHHHHHHHHHH
Q 021020 194 RQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQ 269 (318)
Q Consensus 194 ~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~----~~~~~~i~~L~~EI~~Le~l~~~ 269 (318)
+++.+.++.+.+++.++....++.......=...+.+.-+++.+|..|-..+. ..-++++..++.+|+.++.=...
T Consensus 9 q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~ 88 (105)
T cd00632 9 QQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEED 88 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666665544443222111001111223344444433322110 01124555666666666666666
Q ss_pred HHHHHHHHHHHHH
Q 021020 270 LFLEIYELRQAKE 282 (318)
Q Consensus 270 L~~el~el~~~~~ 282 (318)
+-.++.+++...+
T Consensus 89 l~~~~~elk~~l~ 101 (105)
T cd00632 89 LQEKLKELQEKIQ 101 (105)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655433
No 28
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.13 E-value=2.1e+02 Score=24.73 Aligned_cols=31 Identities=16% Similarity=0.172 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 184 IDESEIKALERQLMQSIETCIAKKKKIILCQ 214 (318)
Q Consensus 184 Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 214 (318)
+++.++..+...+....+-+.+-+.+...++
T Consensus 69 ~s~eel~~ld~ei~~L~~el~~l~~~~k~l~ 99 (169)
T PF07106_consen 69 PSPEELAELDAEIKELREELAELKKEVKSLE 99 (169)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777666555555544444444433
No 29
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=44.00 E-value=1.3e+02 Score=30.98 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHhhhHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLGYALSI 304 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s~T~~Gr~~~~~g~~fsi 304 (318)
|=++|++.+.-||.=.+.|+.+|+.++...-...-+.|=.|+-..++.+-|+.
T Consensus 287 eNqeL~kkV~~Le~~N~sLl~qL~klQt~v~q~an~s~qt~tC~av~~lS~~l 339 (472)
T KOG0709|consen 287 ENQELQKKVEELELSNRSLLAQLKKLQTLVIQVANKSTQTSTCLAVLLLSFCL 339 (472)
T ss_pred CcHHHHHHHHHHhhccHHHHHHHHHHHHHHhhcccchhccchhHHHHHHHHHH
Confidence 34789999999999999999999999987777777777888877777765553
No 30
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=42.06 E-value=47 Score=32.21 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=28.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
.|+++.||.-++=||.-.+.|--||..|+..+-
T Consensus 311 KEYVKCLENRVAVLENQNKaLIEELKtLKeLYc 343 (348)
T KOG3584|consen 311 KEYVKCLENRVAVLENQNKALIEELKTLKELYC 343 (348)
T ss_pred hHHHHHHHhHHHHHhcccHHHHHHHHHHHHHhh
Confidence 368899999999999999999988888877553
No 31
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=41.83 E-value=2.9e+02 Score=25.56 Aligned_cols=31 Identities=19% Similarity=0.400 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
-++++.+|+.+|+.++..++++.--+.+|..
T Consensus 82 q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 82 QEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999888888877665555544
No 32
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=41.41 E-value=94 Score=23.73 Aligned_cols=49 Identities=27% Similarity=0.470 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchhhHHHHHhh
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA-YSRTWRGHMQNLLG 299 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~-~s~T~~Gr~~~~~g 299 (318)
+.|..|++|++-|++=..++-.+-.+|+..-++-+ .-.-|..|+-.++|
T Consensus 18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~ 67 (72)
T PF06005_consen 18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLG 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888887776666555555553211111 11234555555554
No 33
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.41 E-value=1.1e+02 Score=22.11 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
..+.+|+.++..|+.-..+|-.++..|+...++.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L 59 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSL 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678889999999998888888888888766543
No 34
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=40.02 E-value=2.7e+02 Score=31.72 Aligned_cols=36 Identities=25% Similarity=0.379 Sum_probs=29.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~ 285 (318)
+..+..|+.|++.+|+...+|-.++.++++...+.+
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ 435 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE 435 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 467899999999999999999999998886544443
No 35
>PF15190 DUF4583: Domain of unknown function (DUF4583)
Probab=38.12 E-value=1.6e+02 Score=24.95 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=26.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhcc-CcchhhHHHHHHHHHHHHHHHHHH
Q 021020 80 VDLFCLILLLVFMLPYYHCYLMLCNS-GVRKERAALGAILFLLAFLYAFWR 129 (318)
Q Consensus 80 ~~l~~Ll~llivviP~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~l~~f~~ 129 (318)
..++.=+-.+|+.+||++.+.++..- +-+++ ++..+.. .+++..+|+
T Consensus 63 ~slPfW~wa~ifllPYLQ~FlfL~sCTR~DP~-~vgycv~--P~cl~~~c~ 110 (128)
T PF15190_consen 63 LSLPFWMWALIFLLPYLQLFLFLYSCTRADPR-TVGYCVI--PVCLATLCS 110 (128)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHcCCCch-hheeeeH--HHHHHHHHh
Confidence 34555666778888888887777553 22332 3333333 334555563
No 36
>PRK15396 murein lipoprotein; Provisional
Probab=38.06 E-value=1.2e+02 Score=23.65 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021020 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (318)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (318)
+|++.+..+.++.......-|.....++.++.
T Consensus 32 sqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~ 63 (78)
T PRK15396 32 SDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAA 63 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666555555555554433
No 37
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=36.72 E-value=1.9e+02 Score=33.39 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
.++..|+.|.++|..+.++|-.++..+++
T Consensus 1267 ~~LesLq~~~~~l~~~~keL~e~~~~ik~ 1295 (1758)
T KOG0994|consen 1267 KDLESLQREFNGLLTTYKELREQLEKIKE 1295 (1758)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57889999999999999888887777663
No 38
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=36.39 E-value=1.2e+02 Score=23.70 Aligned_cols=27 Identities=22% Similarity=0.407 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYEL 277 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el 277 (318)
+.|.-|++||+.|++=..++..|..++
T Consensus 18 dtI~LLqmEieELKekn~~L~~e~~~~ 44 (79)
T PRK15422 18 DTITLLQMEIEELKEKNNSLSQEVQNA 44 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999888888876663
No 39
>PRK10869 recombination and repair protein; Provisional
Probab=36.24 E-value=2.2e+02 Score=29.78 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=23.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~ 280 (318)
++++.+|++|++.+++--..+..+|++.|..
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888887777777777776643
No 40
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=35.99 E-value=4.2e+02 Score=25.83 Aligned_cols=83 Identities=13% Similarity=0.079 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHhHH-----HHHHHHHHH
Q 021020 18 ILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLF-----CLILLLVFM 92 (318)
Q Consensus 18 ~~ff~~g~~ff~~~l~~~Y~~~~~~~~~~Fs~tfalS~~l~eLil~EI~~~~~~~~r~~~w~~~l~-----~Ll~llivv 92 (318)
..++.+||.+- ..-..+...+.+...+..+.+.+-...+-.-++-=.|+.+. ++.|+=... -+--+..++
T Consensus 62 l~~~~~g~~L~--~~~~~~~~~~~l~~~l~~~a~~~~~~~~~~~l~rp~Gl~~~---HF~w~~~~~~~~r~~l~~~~~~~ 136 (340)
T PF12794_consen 62 LLLLAIGYLLQ--FAAWSSPFSVALGAALLAMALFWLVFEFFRRLLRPNGLAER---HFGWPKERVQRLRRQLRWLIWVL 136 (340)
T ss_pred HHHHHHHHHHH--hccccCchHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEec---cCCCCHHHHHHHHHHHHHHHHHH
Confidence 34555666543 11233454456666666666666666665556655555443 333332222 223455677
Q ss_pred HHHHHHHHHHhcc
Q 021020 93 LPYYHCYLMLCNS 105 (318)
Q Consensus 93 iP~~~~~~l~~~~ 105 (318)
+|......+..+.
T Consensus 137 ~pl~~~~~~~~~~ 149 (340)
T PF12794_consen 137 VPLLFISIFAENL 149 (340)
T ss_pred HHHHHHHHHhccC
Confidence 7888887777654
No 41
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=35.87 E-value=1.3e+02 Score=23.83 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=29.5
Q ss_pred hhHHH-HHHhhhcccccccccccccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021020 156 IGVTV-MAVLAGFGAVNLPYSYLSLFIREID--ESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (318)
Q Consensus 156 iGVtl-mAiLSGfgaVstPy~~~~~f~rpVt--~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (318)
.||++ .++|+| |.|+| .|+ .+|++.+..+.++....+..-|.....++.++.
T Consensus 8 ~aviLs~~LLaG--CAs~~---------kvdqLss~V~~L~~kvdql~~dv~~a~aaa~aAk~EA~ 62 (85)
T PRK09973 8 GAVVLATCLLSG--CVNEQ---------KVNQLASNVQTLNAKIARLEQDMKALRPQIYAAKSEAN 62 (85)
T ss_pred HHHHHHHHHHHH--cCCch---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 345665 55566 333 356777777777766666665666555555443
No 42
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.64 E-value=4e+02 Score=25.49 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEE 265 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~ 265 (318)
.++|++|+.||+.+++
T Consensus 79 ~~eik~l~~eI~~~~~ 94 (265)
T COG3883 79 KAEIKKLQKEIAELKE 94 (265)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666665554
No 43
>COG1480 Predicted membrane-associated HD superfamily hydrolase [General function prediction only]
Probab=35.25 E-value=6.2e+02 Score=27.56 Aligned_cols=38 Identities=21% Similarity=0.224 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021020 25 LWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVL 62 (318)
Q Consensus 25 ~~ff~~~l~~~Y~~~~~~~~~~Fs~tfalS~~l~eLil 62 (318)
++++..+.++-..-.+.--.++++.....++.++..+.
T Consensus 290 lf~~y~~~~~~~~~~~~~~l~~~~~l~i~~l~l~~iv~ 327 (700)
T COG1480 290 LFALYERRTKSPLKLRNSLLLLYLSLAILTLSLLRIVG 327 (700)
T ss_pred HHHHHHHHhccCHHhhhhHHHHHHHHHHHHHHHHhccc
Confidence 33333444433333455566777777777777777665
No 44
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=35.15 E-value=2.8e+02 Score=23.79 Aligned_cols=34 Identities=6% Similarity=0.196 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021020 186 ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 219 (318)
Q Consensus 186 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 219 (318)
+.||++++.++-.+...+-.||..++.+..++..
T Consensus 21 ~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~e 54 (136)
T PF11570_consen 21 DEDIATLQERQASAEQALNGRRSELDQANKKVKE 54 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5678888888888888888888888888765543
No 45
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.99 E-value=2.7e+02 Score=28.39 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELR 278 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~ 278 (318)
+.+.+|.+....|...+..+..|=.+++
T Consensus 161 ~~i~~l~~~~~~l~~~~~~iaaeq~~l~ 188 (420)
T COG4942 161 ERIDALKATLKQLAAVRAEIAAEQAELT 188 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677666666666666655444444
No 46
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.71 E-value=1.2e+02 Score=27.99 Aligned_cols=47 Identities=23% Similarity=0.430 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhhHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY-SRTWRGHMQ 295 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~-s~T~~Gr~~ 295 (318)
..+++..++.|+.-||.+..++-.|+.-|++|.++.+. .++.--|+.
T Consensus 132 Kkeklep~E~elrrLed~~~sI~~e~~YLr~REeemr~~nesTNsrv~ 179 (210)
T KOG1691|consen 132 KKEKLEPLEVELRRLEDLVESIHEEMYYLREREEEMRNTNESTNSRVA 179 (210)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 34778899999999999999999999999988887766 333334443
No 47
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=34.58 E-value=1.6e+02 Score=28.75 Aligned_cols=43 Identities=21% Similarity=0.399 Sum_probs=29.7
Q ss_pred ccchhhheehhhHHHHHHhhhccccc-ccccccccccccCCHHHH
Q 021020 146 IPQLVSRIGVIGVTVMAVLAGFGAVN-LPYSYLSLFIREIDESEI 189 (318)
Q Consensus 146 ~~~~l~RigViGVtlmAiLSGfgaVs-tPy~~~~~f~rpVt~~dI 189 (318)
|++.++++|.=-|+. |+=||++=.| +.-.+.+-|.+.|.+.|.
T Consensus 1 MD~lLak~~~QAvtf-AIRSGIslaS~yAikq~s~~l~~ip~~~~ 44 (302)
T PF05508_consen 1 MDELLAKAGSQAVTF-AIRSGISLASSYAIKQCSRFLKKIPDKDR 44 (302)
T ss_pred ChHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 466778887766666 8888886433 344566667888888764
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=33.61 E-value=3.8e+02 Score=24.52 Aligned_cols=16 Identities=19% Similarity=0.125 Sum_probs=9.1
Q ss_pred chhhHHHHHhhhHHHH
Q 021020 289 TWRGHMQNLLGYALSI 304 (318)
Q Consensus 289 T~~Gr~~~~~g~~fsi 304 (318)
-..|=...+.|.++++
T Consensus 174 f~~Gg~v~~~GlllGl 189 (206)
T PRK10884 174 FMYGGGVAGIGLLLGL 189 (206)
T ss_pred HHHchHHHHHHHHHHH
Confidence 3455555666666554
No 49
>PF12507 HCMV_UL139: Human Cytomegalovirus UL139 protein; InterPro: IPR021042 This entry represents eukaryotic and viral proteins of approximately 140 amino acids in length. The UL139 product shares sequence homology with human CD24, a signal transducer modulating B-cell activation responses, and the sequences in the G1c variant of UL139 contained a specific attachment site of prokaryotic membrane lipoprotein lipid [].
Probab=33.09 E-value=35 Score=28.74 Aligned_cols=43 Identities=14% Similarity=0.075 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHH
Q 021020 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQN 296 (318)
Q Consensus 254 ~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s~T~~Gr~~~ 296 (318)
-+++.+|+.|++=......|+..++.+.+..++-.+-+|||++
T Consensus 47 l~~rs~i~~~~~k~~~~~~~lrs~~geveE~e~~e~~~drfy~ 89 (121)
T PF12507_consen 47 LALRSEIEALDAKYHSDSQQLRSCCGEVEEAEEKEEERDRFYE 89 (121)
T ss_pred HHHhhhhhhhhhhhcchhhhhHhhhccchHHHHHHHhHhhhhh
Confidence 3455566666666555566666666555555555555555554
No 50
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=31.53 E-value=2.7e+02 Score=26.47 Aligned_cols=78 Identities=18% Similarity=0.245 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecce-eccccCCchhhhHHHHHHHHHHHHH
Q 021020 187 SEIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTV-VRSVQDDQKEQDIKIMEAEVQALEE 265 (318)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s-~~s~~~~~~~~~i~~L~~EI~~Le~ 265 (318)
..|.++.+++++-.+-|..=+.+++..+.+......+....+.. . ..+ -.+......+++|..=+.||..||.
T Consensus 180 eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~----~--~~~~~~~~~~~~~de~I~rEeeEIreLE~ 253 (259)
T PF08657_consen 180 EKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSD----D--EESEESSEDSVDTDEDIRREEEEIRELER 253 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----c--cccccccccchhHHHHHHHHHHHHHHHHH
Confidence 46888888888888887776667666665543321111000000 0 000 0000112345777777888888887
Q ss_pred HHHHH
Q 021020 266 LSKQL 270 (318)
Q Consensus 266 l~~~L 270 (318)
-.++|
T Consensus 254 k~~~L 258 (259)
T PF08657_consen 254 KKREL 258 (259)
T ss_pred HHHhc
Confidence 66543
No 51
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=31.28 E-value=1.4e+02 Score=26.68 Aligned_cols=35 Identities=34% Similarity=0.357 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSK---QLFLEIYELRQAKEAA 284 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~---~L~~el~el~~~~~r~ 284 (318)
++||++|+.||+.||+..+ .|-+....+.++-++.
T Consensus 126 ~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F 163 (171)
T PF04799_consen 126 EDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERF 163 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888888888888744 3444555555444443
No 52
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=31.23 E-value=5.5e+02 Score=25.72 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhCCccCC--CCCCCccccccchhhheehhhHHHHHHhhhcccccccccccccccc-cCCHHHHH
Q 021020 115 GAILFLLAFLYAFWRMGIHFPM--PSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR-EIDESEIK 190 (318)
Q Consensus 115 ~~~~~~~~~l~~f~~~G~~~p~--~~~~~g~~~~~~~l~RigViGVtlmAiLSGfgaVstPy~~~~~f~r-pVt~~dI~ 190 (318)
+..+.++.|+++....++-+.. .++.. .+....+.++.++.++..++-=+|++-.||+.+.+..+ .-|..|+.
T Consensus 153 i~~v~~v~~~~l~~~~~~l~~l~~~~~~~---~~~~~~~~~~~~~l~~~~~~liia~~D~~~qr~~~~k~lkMtKqEVK 228 (363)
T COG1377 153 IVLVGLVAYFVLKNHLSELLSLAGQSPVA---ALSIFMELLGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVK 228 (363)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhcCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHH
Confidence 3455556665555555543221 11111 23444555555666666666666777888888777432 23444443
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=30.88 E-value=5.3e+02 Score=28.05 Aligned_cols=55 Identities=16% Similarity=0.280 Sum_probs=31.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 021020 2 GWGIAIYEGTVVTGSLILLGWAGLWFLNIRLYKEYEEKRALVQIIFSVVFAFSCNLLQLVL 62 (318)
Q Consensus 2 ~~~~~~~~~~~~~~s~~~ff~~g~~ff~~~l~~~Y~~~~~~~~~~Fs~tfalS~~l~eLil 62 (318)
+|+.+++.. .|+.-..=|++=.|+ |++..|.-|..+ .+.||+.|.+-+.+.-||-
T Consensus 36 ~w~~~~~~d-~~~~~r~e~~~p~wl-~~~~~~~~~~~~----~~~~~~~~~~~~~~~d~~~ 90 (697)
T PF09726_consen 36 VWALVLLAD-FMLEFRFEYLWPFWL-LLRSVYDSFKYQ----GLAFSVFFVCIAFTSDLIC 90 (697)
T ss_pred HHHHHHHHH-HHhhhHHHHHHHHHH-HHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHH
Confidence 465555411 334444445555554 456677666554 6678888877666555443
No 54
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=30.17 E-value=1.4e+02 Score=25.42 Aligned_cols=40 Identities=30% Similarity=0.327 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHcCCch
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ--AKEAAAYSRTW 290 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~--~~~r~~~s~T~ 290 (318)
+.|+.|+-|..++|.+..+|-.-+..|.. .++|.++.+..
T Consensus 32 arIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~~~ 73 (134)
T PF08232_consen 32 ARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKKLK 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 46889999999999999999888777774 66666665433
No 55
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=29.71 E-value=1.9e+02 Score=30.58 Aligned_cols=27 Identities=22% Similarity=0.643 Sum_probs=25.1
Q ss_pred ccccchhhheehhhHHHHHHhhhcccc
Q 021020 144 FTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (318)
Q Consensus 144 ~~~~~~l~RigViGVtlmAiLSGfgaV 170 (318)
+.+++...|+|.-|=.++-++.||||-
T Consensus 341 ~~mDr~m~~~GL~Gk~~iPl~~GfGCn 367 (591)
T TIGR00437 341 FLMDGIMNKFGLSGRAFIPLILGFGCN 367 (591)
T ss_pred HHHHHHHHHcCCCcccchhhHhccCch
Confidence 578999999999999999999999983
No 56
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=29.54 E-value=54 Score=24.18 Aligned_cols=45 Identities=29% Similarity=0.416 Sum_probs=28.1
Q ss_pred chhhheehhhHHHHHHhhhcccccccccccccccc------cCCHHHHHHHHHHHHHHHHHH
Q 021020 148 QLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIR------EIDESEIKALERQLMQSIETC 203 (318)
Q Consensus 148 ~~l~RigViGVtlmAiLSGfgaVstPy~~~~~f~r------pVt~~dI~~~e~~l~~t~~~l 203 (318)
+.+--++|+|+.++...| |+.|.| +....|....|++|+...+++
T Consensus 5 ~~Iy~~~Vi~l~vl~~~~-----------Ftl~IRri~~~s~~kkq~~~~~eqKLDrIIeLL 55 (58)
T PF13314_consen 5 DLIYYILVIILIVLFGAS-----------FTLFIRRILINSNAKKQDVDSMEQKLDRIIELL 55 (58)
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhccccccchhHHHHHHHHHHHHH
Confidence 444555667777665544 223333 445667778888888887765
No 57
>smart00338 BRLZ basic region leucin zipper.
Probab=29.38 E-value=2e+02 Score=20.76 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
+.+..|+.++..|+.-...|-.++..|+.+...
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~ 58 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELEK 58 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888887765543
No 58
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.11 E-value=1.1e+02 Score=29.86 Aligned_cols=57 Identities=18% Similarity=0.153 Sum_probs=42.8
Q ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHhcc--CcchhhHHHHHHHHHHHHHHHHHHhCCc
Q 021020 77 NWKVDLFCLILLLVFMLPYYHCYLMLCNS--GVRKERAALGAILFLLAFLYAFWRMGIH 133 (318)
Q Consensus 77 ~w~~~l~~Ll~llivviP~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~l~~f~~~G~~ 133 (318)
.|.++..++.-..=|+|-...||.+..-. ..++|-.++++.++.+.|..+..-.|+|
T Consensus 103 ~ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~r~q~~laavLL~gYwl~lm~~p~P 161 (371)
T COG4299 103 DWSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRGRWQALLAAVLLAGYWLFLMFTPHP 161 (371)
T ss_pred eeeeeechhhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 67788777777777888888888776443 3566667888888888888888877766
No 59
>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=29.03 E-value=8.3e+02 Score=27.09 Aligned_cols=102 Identities=17% Similarity=0.185 Sum_probs=80.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhHhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHhccccc--
Q 021020 5 IAIYEGTVVTGSLILLGWAGLWF-LNIRLYKEYEEKR----------ALVQIIFSVVFAFSCNLLQLVLFEIIPILSK-- 71 (318)
Q Consensus 5 ~~~~~~~~~~~s~~~ff~~g~~f-f~~~l~~~Y~~~~----------~~~~~~Fs~tfalS~~l~eLil~EI~~~~~~-- 71 (318)
|+.+|..|+.+|.+...+..+.- +....-++++..+ .-...+|..+.|..+-+.-+=+|....+-..
T Consensus 500 wN~ld~~i~~ls~~~~~~~~~r~~l~~~~l~~~~~~~~~~f~~F~~~a~~~~~~~~l~a~lvfl~tiK~~k~l~f~~t~~ 579 (798)
T KOG3599|consen 500 WNWLDLAIVLLSVVLLVLMITRTGLADGVLTGFERASPRTFIDFTEVAQWNIAARNLLAFLVFLTTIKLWKVLRFNKTMS 579 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 67889999999999998888776 7777777666652 3356677888777777777888888777433
Q ss_pred ---chhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhccC
Q 021020 72 ---EARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNSG 106 (318)
Q Consensus 72 ---~~r~~~w~~~l~~Ll~llivviP~~~~~~l~~~~~ 106 (318)
++-..+|+=....-+..+|+..+|.+...++.+..
T Consensus 580 ~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~ 617 (798)
T KOG3599|consen 580 QFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQ 617 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 36667899989889999999999999988887753
No 60
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=29.00 E-value=1.7e+02 Score=24.55 Aligned_cols=36 Identities=25% Similarity=0.303 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.+.++.+++.|++.|+.-+..+..|++.+-...+..
T Consensus 28 ~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~ 63 (120)
T PF12325_consen 28 LEGELASLQEELARLEAERDELREEIVKLMEENEEL 63 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888899999988999988888887654443
No 61
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.69 E-value=1.1e+02 Score=23.55 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Q 021020 11 TVVTGSLILLGWAGLWFLNIRLYKEYEEK 39 (318)
Q Consensus 11 ~~~~~s~~~ff~~g~~ff~~~l~~~Y~~~ 39 (318)
+.+.+++++.+++| +|+.+|.++.|=-.
T Consensus 8 l~ivl~ll~G~~~G-~fiark~~~k~lk~ 35 (71)
T COG3763 8 LLIVLALLAGLIGG-FFIARKQMKKQLKD 35 (71)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhh
Confidence 45566666666666 66666666666444
No 62
>PF14048 MBD_C: C-terminal domain of methyl-CpG binding protein 2 and 3; PDB: 2L2L_B.
Probab=28.44 E-value=72 Score=25.76 Aligned_cols=16 Identities=25% Similarity=0.561 Sum_probs=12.2
Q ss_pred CCHHHHHHHHHHHHHH
Q 021020 184 IDESEIKALERQLMQS 199 (318)
Q Consensus 184 Vt~~dI~~~e~~l~~t 199 (318)
|||+||++-|+|-..+
T Consensus 73 VT~eDIr~QE~rVk~a 88 (96)
T PF14048_consen 73 VTEEDIRRQERRVKKA 88 (96)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 9999999999887665
No 63
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=28.20 E-value=2e+02 Score=27.06 Aligned_cols=32 Identities=6% Similarity=0.182 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
.++..|++||+.|.-.-.++-.|+.+++++++
T Consensus 61 ~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~ 92 (263)
T PRK10803 61 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 92 (263)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 46788899998887777777777777765443
No 64
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=28.08 E-value=1.9e+02 Score=21.06 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 254 ~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.+|++|+..+++.=..+-.|..+++...++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~en~~i~~~ve~i 33 (55)
T PF05377_consen 3 DELENELPRIESSINTVKKENEEISESVEKI 33 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444443
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=27.01 E-value=5.8e+02 Score=24.80 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021020 185 DESEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (318)
Q Consensus 185 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 217 (318)
+..++.++..++..+...+..||+++...+.+.
T Consensus 202 d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l 234 (312)
T smart00787 202 DPTELDRAKEKLKKLLQEIMIKVKKLEELEEEL 234 (312)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666777777667777777766666554
No 66
>PF14854 LURAP: Leucine rich adaptor protein
Probab=26.89 E-value=1.8e+02 Score=24.54 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=30.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (318)
Q Consensus 248 ~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~ 285 (318)
+-+..++.|++|..+|.++-..+-.++-.+++-.+..+
T Consensus 19 ~Ld~kl~~Lr~EM~~LRqlDvkLL~QL~~vNEsIe~~K 56 (121)
T PF14854_consen 19 NLDAKLAFLRKEMAGLRQLDVKLLQQLLAVNESIEEVK 56 (121)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44678999999999999999988888877776544443
No 67
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=26.06 E-value=2.5e+02 Score=28.28 Aligned_cols=49 Identities=37% Similarity=0.510 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH-HhCCcc--CCCCCCCccc---------c-cc-chhhheehhhHHHHHHhh
Q 021020 117 ILFLLAFLYAFW-RMGIHF--PMPSPEKGFF---------T-IP-QLVSRIGVIGVTVMAVLA 165 (318)
Q Consensus 117 ~~~~~~~l~~f~-~~G~~~--p~~~~~~g~~---------~-~~-~~l~RigViGVtlmAiLS 165 (318)
..+.+.+++.|| ..-.|. |.|+.+.+.. . .+ ----|-+++|+|++|+|.
T Consensus 69 ~lcll~fl~~f~~~lrkP~n~~~~~~kp~~~t~~~q~~~~~~~~~it~yR~~i~~~tviaIlA 131 (429)
T COG5062 69 FLCLLGFLFLFWRRLRKPVNPGNPSSKPKQSTDAPQDDEPYTSMAITRYRFLIIGCTVIAILA 131 (429)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCcccCccccccCcccccccchhhhHHHHHHHHHhhhhheee
Confidence 345667778888 444442 2343332211 0 11 113477899999999984
No 68
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=25.91 E-value=2.1e+02 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.179 Sum_probs=34.7
Q ss_pred hhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHhH
Q 021020 35 EYEEKRALVQIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDL 82 (318)
Q Consensus 35 ~Y~~~~~~~~~~Fs~tfalS~~l~eLil~EI~~~~~~~~r~~~w~~~l 82 (318)
.|.-+-+.+-+.+.+.|+.....|.-++-...+ +++..+++|++.=
T Consensus 10 ~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg--~~~~~nf~~NllG 55 (165)
T PF11286_consen 10 RYRKHLNRVIVACVASLAILSLAFSQLLIALFG--GESGGNFHWNLLG 55 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCCCceeeeHHH
Confidence 355566778888888888888888877777555 7888899998643
No 69
>COG1704 LemA Uncharacterized conserved protein [Function unknown]
Probab=25.76 E-value=4.2e+02 Score=24.05 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEE---LSKQLFLEIYELRQAKE 282 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~---l~~~L~~el~el~~~~~ 282 (318)
+.-.+|+++++++|. ++|+.|+|.+.--+..-
T Consensus 118 ~~f~~Lq~ql~~tEn~Ia~aR~~YN~av~~yN~~i 152 (185)
T COG1704 118 ENFLELQSQLEGTENRIAVARRLYNEAVRDYNVKI 152 (185)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888988884 79999998877555433
No 70
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ. This protein through the member sll1638 from Synechocystis sp. PCC 6803, was shown to be part of the cyanobacteria photosystem II. It is homologous to (but quite diverged from) the chloroplast PsbQ protein, called oxygen-evolving enhancer protein 3 (OEE3). We designate this cyanobacteria protein PsbQ by homology.
Probab=25.65 E-value=4.4e+02 Score=22.82 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021020 257 EAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 257 ~~EI~~Le~l~~~L~~el~el~~ 279 (318)
..|=..+.++.++||.++.+|..
T Consensus 91 p~dqk~a~~L~~~Lf~~L~~LD~ 113 (142)
T TIGR03042 91 PKDQKEALALAKELKDDLEKLDE 113 (142)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999999985
No 71
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=25.64 E-value=2.5e+02 Score=28.64 Aligned_cols=91 Identities=13% Similarity=0.179 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcc-------Ccchhh---H-HHHHHHHHHHHHHHH------------HHhCCccC-C
Q 021020 81 DLFCLILLLVFMLPYYHCYLMLCNS-------GVRKER---A-ALGAILFLLAFLYAF------------WRMGIHFP-M 136 (318)
Q Consensus 81 ~l~~Ll~llivviP~~~~~~l~~~~-------~~~~~~---~-~~~~~~~~~~~l~~f------------~~~G~~~p-~ 136 (318)
..|.+...-++.+|-.++..+-++. -++... . .-..++.+..|+|.+ -|-|..+| .
T Consensus 272 vmPiIFAssll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~Fs~fyt~i~~nP~~iAenL~k~G~~IPGi 351 (434)
T PRK12907 272 VIPVIFASAFLMTPRTIAQLFPDSSVSKWLVANLDFAHPIGMTLYVGLIVAFTYFYAFIQVNPEQMAENLKKQNGYVPGI 351 (434)
T ss_pred ChHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHCCCcCCCc
Confidence 3677788888888988876541110 011111 1 111233333333322 26677777 3
Q ss_pred CCCCCccccccchhhheehhhHHHHHHhhhccccc
Q 021020 137 PSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVN 171 (318)
Q Consensus 137 ~~~~~g~~~~~~~l~RigViGVtlmAiLSGfgaVs 171 (318)
..+++..-++++.++|++++|-..+|++++....-
T Consensus 352 RPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~ 386 (434)
T PRK12907 352 RPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVF 386 (434)
T ss_pred CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 23355666899999999999999999999875553
No 72
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.38 E-value=1.2e+02 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021020 186 ESEIKALERQLMQSIETCIAKKKKIILCQME 216 (318)
Q Consensus 186 ~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (318)
+.++..++++++.+++|+-.|-.++..++..
T Consensus 74 ~~el~~l~~ry~t~LellGEK~E~veEL~~D 104 (120)
T PF12325_consen 74 EQELEELQQRYQTLLELLGEKSEEVEELRAD 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3457778888888888888887777776643
No 73
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=25.03 E-value=2.3e+02 Score=21.37 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021020 254 KIMEAEVQALEELSKQLFLEIYE 276 (318)
Q Consensus 254 ~~L~~EI~~Le~l~~~L~~el~e 276 (318)
+.++.|+++|+.+..-|+.++++
T Consensus 21 s~lr~eiealkY~N~yL~~~~v~ 43 (66)
T PF07438_consen 21 SELRKEIEALKYMNDYLFDQFVR 43 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46799999999999999887765
No 74
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=24.94 E-value=2.5e+02 Score=28.35 Aligned_cols=90 Identities=17% Similarity=0.279 Sum_probs=53.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC-----------cch-h--hHH-HHHHHHHHHHHHHHH------------HhCCc
Q 021020 81 DLFCLILLLVFMLPYYHCYLMLCNSG-----------VRK-E--RAA-LGAILFLLAFLYAFW------------RMGIH 133 (318)
Q Consensus 81 ~l~~Ll~llivviP~~~~~~l~~~~~-----------~~~-~--~~~-~~~~~~~~~~l~~f~------------~~G~~ 133 (318)
..+.+...-++..|..++..+-+... +.. + ... -..++.+..|.|.+- |-|+.
T Consensus 240 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~lii~fs~fys~i~~nP~diAe~lkk~g~~ 319 (404)
T PRK12417 240 GMPIMYSMSLLVFPQYIIILILSIFPNNSGISADMDMLSFGSPLGVTVYLILQFLLSYFFSFVNINTKQIAKDMLKSGNY 319 (404)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCc
Confidence 46778888888889888765421110 111 0 111 122333344444322 45556
Q ss_pred cC-CCCCCCccccccchhhheehhhHHHHHHhhhcccc
Q 021020 134 FP-MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAV 170 (318)
Q Consensus 134 ~p-~~~~~~g~~~~~~~l~RigViGVtlmAiLSGfgaV 170 (318)
+| ...+++..-++++.+.|++.+|-..+|++++.-.+
T Consensus 320 IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~ 357 (404)
T PRK12417 320 IPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLY 357 (404)
T ss_pred ccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 22333455679999999999999999999996444
No 75
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=24.89 E-value=2.3e+02 Score=27.66 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=15.6
Q ss_pred ccccCCHHHHHHHHHHHHHHHHHH
Q 021020 180 FIREIDESEIKALERQLMQSIETC 203 (318)
Q Consensus 180 f~rpVt~~dI~~~e~~l~~t~~~l 203 (318)
++|.+-+.++....+++.+|-+-|
T Consensus 171 RYr~~lkee~d~S~k~ik~~F~~l 194 (302)
T PF07139_consen 171 RYRVVLKEEMDSSIKKIKQTFAEL 194 (302)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Confidence 466776777776666666665544
No 76
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=24.42 E-value=1.4e+02 Score=20.46 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 184 IDESEIKALERQLMQSIETCIAKKKKIILC 213 (318)
Q Consensus 184 Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~ 213 (318)
.+|+|+.+..+||.. +-|++++.+
T Consensus 17 P~ESELskr~rrLIR------aa~k~leal 40 (44)
T PF08134_consen 17 PTESELSKRIRRLIR------AARKQLEAL 40 (44)
T ss_pred CcHHHHHHHHHHHHH------HHHHHHHHH
Confidence 468888777776644 445555443
No 77
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.34 E-value=4.3e+02 Score=23.25 Aligned_cols=14 Identities=14% Similarity=0.380 Sum_probs=8.4
Q ss_pred hhhhHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQA 262 (318)
Q Consensus 249 ~~~~i~~L~~EI~~ 262 (318)
.++|+++|+.|++.
T Consensus 159 ~~~ei~~lk~el~~ 172 (192)
T PF05529_consen 159 LSEEIEKLKKELEK 172 (192)
T ss_pred hHHHHHHHHHHHHH
Confidence 34566666666655
No 78
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=24.31 E-value=2.7e+02 Score=28.95 Aligned_cols=48 Identities=27% Similarity=0.355 Sum_probs=32.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHhh
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAYSRTWRGHMQNLLG 299 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~s~T~~Gr~~~~~g 299 (318)
+...+++.|+..++.--..+-.+.-+|+...++.- |+-..||-.|+.|
T Consensus 460 ~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~~I-Sk~y~gR~VnimG 507 (507)
T PF05600_consen 460 EKRQEAQEEQQELEPKLDALVERTRELQKQIEADI-SKRYKGRPVNIMG 507 (507)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCeeeccC
Confidence 34556667777777766777777777777666653 4557888887765
No 79
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.22 E-value=1.2e+02 Score=34.85 Aligned_cols=32 Identities=9% Similarity=0.077 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021020 185 DESEIKALERQLMQSIETCIAKKKKIILCQME 216 (318)
Q Consensus 185 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~ 216 (318)
.|.++..+.++.++|+.|+.+-|.+-..++.+
T Consensus 1420 ~~~~l~~~~ae~eq~~~~v~ea~~~aseA~~~ 1451 (1758)
T KOG0994|consen 1420 ADTQLRSKLAEAEQTLSMVREAKLSASEAQQS 1451 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 46779999999999999997766654444443
No 80
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=23.92 E-value=2.7e+02 Score=28.12 Aligned_cols=94 Identities=15% Similarity=0.243 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccC---------cchhhHH-HHHHHHHHHHHHHHH---------------HhCCccC
Q 021020 81 DLFCLILLLVFMLPYYHCYLMLCNSG---------VRKERAA-LGAILFLLAFLYAFW---------------RMGIHFP 135 (318)
Q Consensus 81 ~l~~Ll~llivviP~~~~~~l~~~~~---------~~~~~~~-~~~~~~~~~~l~~f~---------------~~G~~~p 135 (318)
..+.+...-++..|..+...+-++.. ++.+... ....++.++++-.|| |-|+.+|
T Consensus 256 vmPiIfassll~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~~lii~Fs~f~~~i~~~p~~iA~~Lkk~g~~Ip 335 (417)
T CHL00161 256 VMPIIFASALLVLPGYLTNILLNQFLLPLLSLFLQLASFKILYLVLYFVLILFFSYFYSTIVLNPKDISENLQKMAVSIP 335 (417)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccchhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCCcCC
Confidence 46778888888889888775422211 1111111 112222222233333 4455555
Q ss_pred -CCCCCCccccccchhhheehhhHHHHHHhhhcccccccc
Q 021020 136 -MPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPY 174 (318)
Q Consensus 136 -~~~~~~g~~~~~~~l~RigViGVtlmAiLSGfgaVstPy 174 (318)
..++++..-++++.+.|++++|=..+|++++...+-..|
T Consensus 336 GvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~ 375 (417)
T CHL00161 336 GIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESV 375 (417)
T ss_pred CcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 222223345789999999999999999999987665444
No 81
>PF09323 DUF1980: Domain of unknown function (DUF1980); InterPro: IPR015402 Members of this occur in gene pairs with members of PF03773 from PFAM. The N-terminal region contains several predicted transmembrane helix regions while the few invariant residues (G, CxxD, and W) occur in the C-terminal region. Members of this family are found in a set of prokaryotic hypothetical proteins. Their exact function has not, as yet, been defined.
Probab=23.78 E-value=2.5e+02 Score=24.74 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhccccc
Q 021020 55 CNLLQLVLFEIIPILSK 71 (318)
Q Consensus 55 ~~l~eLil~EI~~~~~~ 71 (318)
+.++-|-++++..+..+
T Consensus 40 i~l~ilai~q~~~~~~~ 56 (182)
T PF09323_consen 40 ILLLILAIVQLWRWFRP 56 (182)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444444444433
No 82
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=23.47 E-value=3.7e+02 Score=21.10 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 189 IKALERQLMQSIETCIAKKKKIILCQ 214 (318)
Q Consensus 189 I~~~e~~l~~t~~~l~~Kk~rl~~~~ 214 (318)
...+|.+..++.|.|.-=+-++..++
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELK 31 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELK 31 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998866555555555
No 83
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=23.37 E-value=6.6e+02 Score=24.07 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcCCchhhHHHHHhhhHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQ-AKEAAAYSRTWRGHMQNLLGYALSIYC 306 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~-~~~r~~~s~T~~Gr~~~~~g~~fsiYC 306 (318)
++.++...++.++++-+.|......+.+ ++.+.-+-=|..+-++.-+..+.|+|-
T Consensus 228 ~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyG 283 (322)
T COG0598 228 HLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYG 283 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccc
Confidence 3444555555555555555555544443 333444445667777777777777764
No 84
>PF14895 PPPI_inhib: Protein phosphatase 1 inhibitor
Probab=23.34 E-value=5.5e+02 Score=25.57 Aligned_cols=103 Identities=14% Similarity=0.023 Sum_probs=64.0
Q ss_pred cccccccCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccCCchhhhH
Q 021020 177 LSLFIREIDESEIKALERQLMQSIETCIA---KKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDI 253 (318)
Q Consensus 177 ~~~f~rpVt~~dI~~~e~~l~~t~~~l~~---Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i 253 (318)
..+...|..|.=+.++.-.+.+=++++.. ||+++.....+ . ...+-
T Consensus 70 ~~fmh~~~vdrfL~aLiiYf~yyL~~~e~~l~rr~E~~~~~~~------------------------v-------~~~~~ 118 (347)
T PF14895_consen 70 IEFMHNPAVDRFLHALIIYFEYYLRKVEFVLIRRDELKPKMAQ------------------------V-------QSEQT 118 (347)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhhh------------------------c-------CChhh
Confidence 34466788888888877776665554422 33332111100 0 00233
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHH----------HHHHHHcCCchhhHHHHHhhhHHHHHHHHHH
Q 021020 254 KIMEAEVQA-LEELSKQLFLEIYELRQ----------AKEAAAYSRTWRGHMQNLLGYALSIYCVYKM 310 (318)
Q Consensus 254 ~~L~~EI~~-Le~l~~~L~~el~el~~----------~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyRI 310 (318)
++++.+.+- |+..+.-+..++..+-. +++....|.|-+-+.+-=.=+.|+.||||=.
T Consensus 119 ~e~~~~~s~~L~~~r~~lAr~Y~~lllG~gdm~~~hHmk~~~~iS~t~KD~~ffE~fl~~~t~IvWI~ 186 (347)
T PF14895_consen 119 KEMKRIFSKYLSQARMLLARNYCVLLLGEGDMPKYHHMKEIVNISDTQKDRRFFEQFLAFCTQIVWIA 186 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777 88888888888887763 2233455788887777667788999999843
No 85
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=23.12 E-value=4.8e+02 Score=26.52 Aligned_cols=31 Identities=10% Similarity=0.269 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021020 188 EIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (318)
Q Consensus 188 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (318)
++..+|+.+.+.-.-|..-|.++..++++.+
T Consensus 3 ~~~elq~e~~~~E~qL~~a~qkl~da~~~~e 33 (428)
T PF00846_consen 3 TLEELQEEITQHEQQLVIARQKLKDAEKQYE 33 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444555554444444455556666665543
No 86
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.88 E-value=1.8e+02 Score=28.30 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=33.5
Q ss_pred hhcccccccccccccccccCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021020 165 AGFGAVNLPYSYLSLFIREID-----ESEIKALERQLMQSIETCIAKKKKIILCQMEMDR 219 (318)
Q Consensus 165 SGfgaVstPy~~~~~f~rpVt-----~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~ 219 (318)
++.---+.|+.+=.....|.+ ..|++.+|+.|..-.+-|..|-.+|+.-|+++++
T Consensus 33 ~p~~~~~~~~~~~~tv~~P~~~~~~~a~~~~~kq~eL~~rqeEL~Rke~ELdRREr~~a~ 92 (313)
T KOG3088|consen 33 SPLPPEPAPSDQGPTVDIPLDSPSTQAKDLAKKQAELLKKQEELRRKEQELDRRERALAR 92 (313)
T ss_pred CCCCCCCCCCCCCCccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 333344444543333344433 3688889999888878775555567777776655
No 87
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=22.86 E-value=1.8e+02 Score=23.64 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
.+++.++++|++.|+.=.++|..|+..|++
T Consensus 33 ~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 33 NDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 367788888888888888888888888875
No 88
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=22.85 E-value=6e+02 Score=26.13 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~ 285 (318)
+++.++..++..++.-.+.+-.++.+++++.++..
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56777888888888888888888888877665554
No 89
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=22.77 E-value=1.6e+02 Score=21.56 Aligned_cols=27 Identities=30% Similarity=0.414 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYEL 277 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el 277 (318)
.++++|+.|++.+++=..+|-.++..+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 567777777777777777777777777
No 90
>PF14965 BRI3BP: Negative regulator of p53/TP53
Probab=22.63 E-value=5.7e+02 Score=23.02 Aligned_cols=131 Identities=17% Similarity=0.161 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHhHHHHHHHHHHHHHHHHHHHHHhcc-----CcchhhHHHHH-HHH
Q 021020 46 IFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLFCLILLLVFMLPYYHCYLMLCNS-----GVRKERAALGA-ILF 119 (318)
Q Consensus 46 ~Fs~tfalS~~l~eLil~EI~~~~~~~~r~~~w~~~l~~Ll~llivviP~~~~~~l~~~~-----~~~~~~~~~~~-~~~ 119 (318)
.|+-..+..+...-=|.-|++|.+.-+..+..++++-......+....-.++.|-+++-. ..-.|..|.+= +..
T Consensus 34 ~~~~gis~~l~~l~~i~~dlL~~~Gid~~~lt~~~SP~~V~~~llw~~~aL~~YW~LSllLgl~~~lLgR~fW~lkv~lf 113 (177)
T PF14965_consen 34 RFSSGISSALNTLWRIWTDLLDVLGIDGSNLTHYFSPGGVQTVLLWGAVALLAYWFLSLLLGLLFALLGRVFWLLKVVLF 113 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666777777876655555555666554444444333334444333221 01122233332 222
Q ss_pred HHHHHHHHHHhCCccCCCCCCCccccccchhhheehhhHHHHHHhhhcccccccccccccccccCCHHHHHHHHHHHHH
Q 021020 120 LLAFLYAFWRMGIHFPMPSPEKGFFTIPQLVSRIGVIGVTVMAVLAGFGAVNLPYSYLSLFIREIDESEIKALERQLMQ 198 (318)
Q Consensus 120 ~~~~l~~f~~~G~~~p~~~~~~g~~~~~~~l~RigViGVtlmAiLSGfgaVstPy~~~~~f~rpVt~~dI~~~e~~l~~ 198 (318)
...+.++..+..+| .|+..-++ .+++....|+|.+.-..|= +--|+.+..+|+|.+.
T Consensus 114 l~~f~~Il~~~~~~------------~e~a~l~L--~~lv~~~~l~g~~gs~~~~--------~~LE~kv~~LE~qvr~ 170 (177)
T PF14965_consen 114 LLSFVYILQKYEGP------------PERAALLL--CLLVLVCFLTGLVGSYWRS--------ASLEAKVRHLERQVRE 170 (177)
T ss_pred HHHHHHHHHcCCCc------------hHHHHHHH--HHHHHHHHHccccCCCCCc--------ccHHHHHHHHHHHHHH
Confidence 24444555543321 13333343 4677777888875433332 2234556666655543
No 91
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.60 E-value=5.6e+02 Score=22.91 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=19.0
Q ss_pred cccchhhhhhHHhHHHHHHHHHHHHHHHHHHH
Q 021020 69 LSKEARVVNWKVDLFCLILLLVFMLPYYHCYL 100 (318)
Q Consensus 69 ~~~~~r~~~w~~~l~~Ll~llivviP~~~~~~ 100 (318)
.+...|...|+..+..++..++.+.=+.....
T Consensus 138 ~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~~ 169 (206)
T PF06570_consen 138 KKKKKRPSWWKYILISVLAMVLWIVIFVLTSF 169 (206)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888776666555544443333333
No 92
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=22.06 E-value=5.7e+02 Score=26.54 Aligned_cols=33 Identities=24% Similarity=0.372 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
++-.+|+.||..|.++..++..|...|.+.-..
T Consensus 165 ~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 165 QERHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566889999999999999999999998876644
No 93
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.03 E-value=3.8e+02 Score=27.80 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~ 286 (318)
+++..+...||+.=|++..+|++++..+-....|..|
T Consensus 351 eqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~y 387 (521)
T KOG1937|consen 351 EQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVY 387 (521)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHH
Confidence 3455555566666677888888888777653333333
No 94
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=21.81 E-value=1.8e+02 Score=31.36 Aligned_cols=36 Identities=31% Similarity=0.400 Sum_probs=31.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.++|+++|+.|++.||.=++-|-+|...+...+.|.
T Consensus 31 ~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~~~~r~ 66 (654)
T PF09798_consen 31 HEEELNKLKSEVQKLEDEKKFLNNELRSLSSSKRRK 66 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 347899999999999999999999998888766665
No 95
>PF07637 PSD5: Protein of unknown function (DUF1595); InterPro: IPR013043 A region of similarity shared by several Rhodopirellula baltica cytochrome-like proteins that are predicted to be secreted. These proteins also contain IPR011478 from INTERPRO, IPR013036 from INTERPRO, IPR013039 from INTERPRO and IPR013042 from INTERPRO.
Probab=21.65 E-value=1.1e+02 Score=22.51 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=15.6
Q ss_pred cccccCCHHHHHHHHHHHHHH
Q 021020 179 LFIREIDESEIKALERQLMQS 199 (318)
Q Consensus 179 ~f~rpVt~~dI~~~e~~l~~t 199 (318)
.++||+++.|+...-+-+++.
T Consensus 14 AfRRp~~~~e~~~~~~~~~~~ 34 (64)
T PF07637_consen 14 AFRRPLTDEEVDRYLALYDSA 34 (64)
T ss_pred HhCCCCCHHHHHHHHHHHHHH
Confidence 378999999988776555444
No 96
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.56 E-value=4.9e+02 Score=21.89 Aligned_cols=36 Identities=19% Similarity=0.239 Sum_probs=29.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~ 286 (318)
+....|+.+|+.||.=++.+-.++.+|+.+..+.-.
T Consensus 77 er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 77 ERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566788889999999999999999999987766543
No 97
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=21.50 E-value=1.2e+02 Score=28.03 Aligned_cols=38 Identities=11% Similarity=0.244 Sum_probs=30.6
Q ss_pred HHHHHHcCCchhhHHHHHhhhHHHHHHHHHHHHHHhhc
Q 021020 280 AKEAAAYSRTWRGHMQNLLGYALSIYCVYKMIKVWLSF 317 (318)
Q Consensus 280 ~~~r~~~s~T~~Gr~~~~~g~~fsiYCvyRI~~stini 317 (318)
..++.....||.-|+.-++-.+++++|+.+++...++.
T Consensus 174 ~~~~~n~~~tW~lR~~G~llmf~G~~~~~~~l~~l~~~ 211 (248)
T PF07787_consen 174 KEHSANNTLTWILRFIGWLLMFIGFFLLFSPLYTLVDW 211 (248)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444556799999999999999999999999877653
No 98
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=21.28 E-value=2.9e+02 Score=19.32 Aligned_cols=29 Identities=45% Similarity=0.455 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
+.+..|+.++..|+.-..+|-.++..|+.
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34567777778787777777777777654
No 99
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.23 E-value=5.4e+02 Score=28.16 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=27.9
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQM 215 (318)
Q Consensus 182 rpVt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~ 215 (318)
.|..|.|...+..+...--.+|-+||.+|+-+.-
T Consensus 578 ~~~~d~d~e~l~eqilKLKSLLSTKREQIaTLRT 611 (717)
T PF09730_consen 578 ASEADKDKEELQEQILKLKSLLSTKREQIATLRT 611 (717)
T ss_pred CCcccccHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888888899999999987764
No 100
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=20.96 E-value=3.6e+02 Score=20.10 Aligned_cols=47 Identities=17% Similarity=0.339 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhhHHhHHHHHHHHHHH
Q 021020 44 QIIFSVVFAFSCNLLQLVLFEIIPILSKEARVVNWKVDLFCLILLLVFM 92 (318)
Q Consensus 44 ~~~Fs~tfalS~~l~eLil~EI~~~~~~~~r~~~w~~~l~~Ll~llivv 92 (318)
-.+..+.++|...++.++=-+ +-..+.++..-||+.+.++++.++++
T Consensus 7 ~lll~ii~sL~saL~~l~kd~--~~~~rm~~~L~~RV~lS~~l~~lil~ 53 (63)
T PF11137_consen 7 LLLLAIIASLFSALFFLVKDK--GSSKRMVKALGRRVGLSALLFLLILI 53 (63)
T ss_pred HHHHHHHHHHHHHHHHHhhCC--CCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555544322 22223377777888777777766553
No 101
>KOG2577 consensus Transcription factor E2F/dimerization partner (TDP) [Transcription]
Probab=20.57 E-value=2.6e+02 Score=27.93 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=20.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELR 278 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~ 278 (318)
..++.+.|++|++.|+..++.|=.-+..++
T Consensus 142 ~~e~~~~l~~e~~~L~~~E~~LD~~i~~~q 171 (354)
T KOG2577|consen 142 VPERLNGLEAEVEDLSQEEDDLDQLIRDCQ 171 (354)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888888888888766544444433
No 102
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=20.44 E-value=1.2e+02 Score=26.43 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLF 271 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~ 271 (318)
+.+|..|+..|+.|.+++++|-
T Consensus 112 D~eIe~Lq~Ki~~LKeiR~hLk 133 (145)
T PF12548_consen 112 DHEIETLQDKIKNLKEIRGHLK 133 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999873
No 103
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=20.42 E-value=6.5e+02 Score=26.59 Aligned_cols=32 Identities=13% Similarity=0.201 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQA----LEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 251 ~~i~~L~~EI~~----Le~l~~~L~~el~el~~~~~ 282 (318)
+++.+|+.|++. .++++++|-.+.+.+++..+
T Consensus 219 ~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~ 254 (555)
T TIGR03545 219 EEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLA 254 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 566666666655 55555555555555554333
No 104
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=20.37 E-value=3.7e+02 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=24.8
Q ss_pred ccchhhheehhhHHHHHHhhhccccccccc
Q 021020 146 IPQLVSRIGVIGVTVMAVLAGFGAVNLPYS 175 (318)
Q Consensus 146 ~~~~l~RigViGVtlmAiLSGfgaVstPy~ 175 (318)
++..++++| +|+..-+.=||-++-.+||.
T Consensus 138 ~e~~le~vG-l~~~~~~s~s~~~~~~sp~~ 166 (1195)
T KOG4643|consen 138 AEKLLELVG-LEKKYRESRSGKELYKSPYD 166 (1195)
T ss_pred HHHHHHHhc-ccceeeccccCCCCCCCcch
Confidence 577788888 78888888899999999987
No 105
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.24 E-value=7.2e+02 Score=27.13 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 254 KIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 254 ~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
+++..|++.++.-=++|-..+.+++.+.+++
T Consensus 635 r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q 665 (717)
T PF10168_consen 635 REFKKELERMKDQLQDLKASIEQLKKKLDYQ 665 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666555555555555666666544443
No 106
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.00 E-value=6.5e+02 Score=22.67 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 257 EAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 257 ~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
+.|.+.|.+|+..+-.|+.||....+
T Consensus 144 R~EaeQLQsLR~avRqElqELE~QL~ 169 (179)
T PF14723_consen 144 REEAEQLQSLRSAVRQELQELEFQLE 169 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999986443
Done!