Query 021020
Match_columns 318
No_of_seqs 127 out of 161
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021020.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021020hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 87.3 1.3 4.5E-05 27.1 4.7 28 252-279 3-30 (33)
2 3csx_A Putative uncharacterize 69.7 2.8 9.5E-05 31.8 2.6 32 248-279 12-43 (81)
3 2js5_A Uncharacterized protein 62.7 8.3 0.00028 28.5 3.9 29 251-279 3-31 (71)
4 3lay_A Zinc resistance-associa 60.9 78 0.0027 27.0 10.9 34 248-284 110-143 (175)
5 3ra3_B P2F; coiled coil domain 59.8 4.3 0.00015 24.0 1.5 14 251-264 14-27 (28)
6 2v71_A Nuclear distribution pr 57.3 96 0.0033 26.9 10.5 28 252-279 89-116 (189)
7 2zqm_A Prefoldin beta subunit 57.2 63 0.0022 24.8 10.6 36 250-285 76-111 (117)
8 4etp_A Kinesin-like protein KA 51.5 46 0.0016 32.0 8.3 28 252-279 32-59 (403)
9 2l5g_A GPS2 protein, G protein 50.1 17 0.00057 23.5 3.2 26 249-274 13-38 (38)
10 3eff_K Voltage-gated potassium 50.0 74 0.0025 25.3 8.2 31 74-104 1-31 (139)
11 3nmd_A CGMP dependent protein 48.1 35 0.0012 25.2 5.2 23 254-276 43-65 (72)
12 1go4_E MAD1 (mitotic arrest de 47.9 40 0.0014 26.4 5.9 17 250-266 74-90 (100)
13 2k48_A Nucleoprotein; viral pr 44.5 1.1E+02 0.0038 24.1 7.9 37 182-218 30-66 (107)
14 2yy0_A C-MYC-binding protein; 43.8 43 0.0015 23.0 4.9 34 248-281 16-49 (53)
15 2wt7_A Proto-oncogene protein 42.3 57 0.0019 22.9 5.6 33 251-283 23-55 (63)
16 3tnu_B Keratin, type II cytosk 41.3 47 0.0016 26.6 5.6 33 251-283 43-75 (129)
17 4fi5_A Nucleoprotein; structur 41.1 1E+02 0.0035 24.5 7.3 70 188-281 23-92 (113)
18 3tnu_A Keratin, type I cytoske 39.1 52 0.0018 26.4 5.6 33 251-283 45-77 (131)
19 1t3j_A Mitofusin 1; coiled coi 37.1 78 0.0027 24.5 6.0 19 250-268 53-71 (96)
20 2l2l_B Methyl-CPG-binding doma 37.1 42 0.0014 21.5 3.6 17 183-199 6-22 (36)
21 2jee_A YIIU; FTSZ, septum, coi 36.9 75 0.0026 23.9 5.7 29 251-279 20-48 (81)
22 2aze_B Transcription factor E2 36.2 58 0.002 25.5 5.2 30 251-280 6-35 (106)
23 3q8t_A Beclin-1; autophagy, AT 35.4 77 0.0026 24.3 5.7 32 251-282 4-35 (96)
24 1t2k_D Cyclic-AMP-dependent tr 34.6 90 0.0031 21.6 5.6 33 251-283 22-54 (61)
25 3na7_A HP0958; flagellar bioge 33.6 2.5E+02 0.0085 24.7 10.8 28 187-214 32-59 (256)
26 1gd2_E Transcription factor PA 33.6 70 0.0024 23.3 4.9 33 249-281 27-59 (70)
27 2ic9_A Nucleocapsid protein; h 32.7 1.7E+02 0.0059 22.6 7.7 81 188-292 6-86 (96)
28 1g6u_A Domain swapped dimer; d 30.8 81 0.0028 20.7 4.3 25 251-275 20-44 (48)
29 1fmh_A General control protein 30.1 95 0.0033 18.8 4.6 27 252-278 2-28 (33)
30 1jnm_A Proto-oncogene C-JUN; B 29.0 1.2E+02 0.004 21.1 5.4 32 251-282 22-53 (62)
31 4g1a_A AQ-C16C19 peptide; heli 28.0 30 0.001 20.9 1.7 15 252-266 1-15 (32)
32 1fxk_A Prefoldin; archaeal pro 27.5 1.9E+02 0.0066 21.5 10.2 48 233-280 50-101 (107)
33 2xdj_A Uncharacterized protein 26.9 1.4E+02 0.0047 22.3 5.7 34 251-284 27-60 (83)
34 3u06_A Protein claret segregat 26.2 2E+02 0.0068 27.6 8.2 28 252-279 32-59 (412)
35 3ghg_C Fibrinogen gamma chain; 24.8 4.1E+02 0.014 25.6 10.1 31 185-215 36-66 (411)
36 1kd8_A GABH AIV, GCN4 acid bas 24.5 1.4E+02 0.0048 19.0 5.0 31 252-282 2-32 (36)
37 1dh3_A Transcription factor CR 24.2 1.1E+02 0.0037 21.0 4.4 30 251-280 22-51 (55)
38 1ci6_A Transcription factor AT 23.5 1.7E+02 0.0058 20.5 5.4 30 252-281 24-53 (63)
39 3vkg_A Dynein heavy chain, cyt 23.5 3.2E+02 0.011 33.5 10.6 17 289-307 2102-2118(3245)
40 2lw9_A Unconventionnal myosin- 23.3 1.8E+02 0.0062 19.8 5.5 33 251-283 6-43 (51)
41 3vou_A ION transport 2 domain 23.2 78 0.0027 25.5 4.1 14 205-218 124-137 (148)
42 1bb1_B Designed, thermostable 22.6 94 0.0032 19.2 3.2 20 250-269 15-34 (36)
43 2dgc_A Protein (GCN4); basic d 22.3 1.5E+02 0.0051 20.9 4.9 31 251-281 30-60 (63)
44 3nmd_A CGMP dependent protein 21.8 82 0.0028 23.2 3.4 21 259-279 41-61 (72)
45 3twe_A Alpha4H; unknown functi 20.8 1.2E+02 0.0041 17.6 3.2 15 268-282 4-18 (27)
46 3he5_B Synzip2; heterodimeric 20.7 1.4E+02 0.0049 19.8 4.1 30 255-284 21-50 (52)
47 1aa0_A Fibritin, gpwac E; bact 20.5 3.1E+02 0.011 21.5 7.5 64 207-287 23-86 (113)
48 3zsu_A TLL2057 protein, cyanoq 20.2 3.4E+02 0.012 22.0 7.2 30 184-217 15-44 (130)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=87.29 E-value=1.3 Score=27.10 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
||++|++||.+|+.=-..|-.|+..+++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6788888888888766666667666654
No 2
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=69.71 E-value=2.8 Score=31.85 Aligned_cols=32 Identities=13% Similarity=0.294 Sum_probs=24.7
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 248 ~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
++++++.+|+.||.-|.....++-.|||||-.
T Consensus 12 ~t~~di~eLkkevkKL~~~A~q~kmdLHDLaE 43 (81)
T 3csx_A 12 PTPEAVADLKKKVRKLNSKAGQMKMDLHDLAE 43 (81)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44568899999999999999999999999865
No 3
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=62.71 E-value=8.3 Score=28.51 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
+++.+|+.||.-|.+...++-.|||+|-.
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaE 31 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAE 31 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 47889999999999999999999999854
No 4
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=60.94 E-value=78 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=23.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 248 ~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.+++.|++|..||..|+ .++..+-.+++.+-++.
T Consensus 110 ~DeakI~aL~~Ei~~Lr---~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 110 PDTAKINAVAKEMESLG---QKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Confidence 56667888888776554 47777777777665444
No 5
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=59.76 E-value=4.3 Score=23.98 Aligned_cols=14 Identities=50% Similarity=0.688 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALE 264 (318)
Q Consensus 251 ~~i~~L~~EI~~Le 264 (318)
+||++|+-||.+||
T Consensus 14 qeiaaleyeiaale 27 (28)
T 3ra3_B 14 QEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 56677777777665
No 6
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=57.31 E-value=96 Score=26.90 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
.++.|+.|+..|.....++-..+.+|..
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq 116 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQ 116 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888887777766664
No 7
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=57.16 E-value=63 Score=24.76 Aligned_cols=36 Identities=28% Similarity=0.372 Sum_probs=27.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~ 285 (318)
++++..++.+|+.|+.-...+-.++.+++...+..-
T Consensus 76 ~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 76 KEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777888888888888888888888886555443
No 8
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=51.51 E-value=46 Score=31.95 Aligned_cols=28 Identities=25% Similarity=0.305 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
++++++++...-|.+++.|++++.||+.
T Consensus 32 ~~~~~~~~~~~~~~~rr~l~n~~~elkg 59 (403)
T 4etp_A 32 GMKELNEILIKEETVRRTLHNELQELRG 59 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4566777777788999999999999874
No 9
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=50.06 E-value=17 Score=23.50 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=22.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEI 274 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el 274 (318)
..++|..|+.+.++|.+=+-|||.++
T Consensus 13 tkeQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 13 TKEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34789999999999999999999864
No 10
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=50.01 E-value=74 Score=25.27 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=17.0
Q ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHHHHHhc
Q 021020 74 RVVNWKVDLFCLILLLVFMLPYYHCYLMLCN 104 (318)
Q Consensus 74 r~~~w~~~l~~Ll~llivviP~~~~~~l~~~ 104 (318)
|..+|+-.+..++++++++.-...++..+.+
T Consensus 1 r~~~~r~~~~~~~~~~~~~~~~a~~~~~~e~ 31 (139)
T 3eff_K 1 SALHWRAAGAATVLLVIVLLAGSYLAVLAER 31 (139)
T ss_dssp CTHHHHTHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666555555555555555433
No 11
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=48.07 E-value=35 Score=25.18 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 021020 254 KIMEAEVQALEELSKQLFLEIYE 276 (318)
Q Consensus 254 ~~L~~EI~~Le~l~~~L~~el~e 276 (318)
++|+.|++..++.-++|-.++++
T Consensus 43 ~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 43 DELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=47.93 E-value=40 Score=26.41 Aligned_cols=17 Identities=29% Similarity=0.433 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEEL 266 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l 266 (318)
..++..|++|++.|...
T Consensus 74 ~~~~e~Lq~E~erLr~~ 90 (100)
T 1go4_E 74 REDHSQLQAECERLRGL 90 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35677777777776654
No 13
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=44.52 E-value=1.1e+02 Score=24.10 Aligned_cols=37 Identities=8% Similarity=0.211 Sum_probs=29.5
Q ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021020 182 REIDESEIKALERQLMQSIETCIAKKKKIILCQMEMD 218 (318)
Q Consensus 182 rpVt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~ 218 (318)
.|.|-+||..+|+.+.+.-.-|..-|.+|..++++++
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E 66 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVE 66 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4667788999999998887778788888888887654
No 14
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.84 E-value=43 Score=23.02 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=28.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 248 QKEQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (318)
Q Consensus 248 ~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~ 281 (318)
++..|..+|++|.+.|+.=-..|-.+..+++.+.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557889999999999998888888888887754
No 15
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.26 E-value=57 Score=22.91 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
+.+..|+.|++.|+.-...|-.++..|+.+.+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888887776554
No 16
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=41.27 E-value=47 Score=26.63 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
..+..|+.|+++++.+..+|=..+.++..+.+.
T Consensus 43 r~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 357788889999998888888888777765443
No 17
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=41.14 E-value=1e+02 Score=24.54 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccCCchhhhHHHHHHHHHHHHHHH
Q 021020 188 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 267 (318)
Q Consensus 188 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i~~L~~EI~~Le~l~ 267 (318)
+|..+|..+.+.-.-|..-|.+|..+++..... | .+.++ ++ +.+-+.++++||+--
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~D-P-DevNK-~t---------------------l~~R~~~Vs~lq~Ki 78 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKD-P-DELNK-RT---------------------LTDREGVAVSIQAKI 78 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CHHHH-HH---------------------HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cHHHH-HH---------------------HHHHHHHHHHHHHHH
Confidence 466666666665555666666777777654431 1 01111 11 123366788888777
Q ss_pred HHHHHHHHHHHHHH
Q 021020 268 KQLFLEIYELRQAK 281 (318)
Q Consensus 268 ~~L~~el~el~~~~ 281 (318)
.+|-..+.+.....
T Consensus 79 aeLKrqLAd~va~~ 92 (113)
T 4fi5_A 79 DELKRQLADRIATG 92 (113)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777766533
No 18
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.12 E-value=52 Score=26.42 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
..+..|+.||++++.+...|=..+.|+..+.+.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 467889999999999988888888777765443
No 19
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=37.08 E-value=78 Score=24.54 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSK 268 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~ 268 (318)
++||++|+.||+.||.+.+
T Consensus 53 ~~EI~~L~~eI~~LE~iqs 71 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQN 71 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4678888888888877743
No 20
>2l2l_B Methyl-CPG-binding domain protein 2; DNA methylation, coiled-coil, NURD, MBD2, P66alpha, transfer; NMR {Homo sapiens}
Probab=37.07 E-value=42 Score=21.49 Aligned_cols=17 Identities=18% Similarity=0.368 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHHHH
Q 021020 183 EIDESEIKALERQLMQS 199 (318)
Q Consensus 183 pVt~~dI~~~e~~l~~t 199 (318)
.|||.||.+-|.+...+
T Consensus 6 ~Vte~DIr~QE~rV~~a 22 (36)
T 2l2l_B 6 IVTDEDIRKQEERVQQV 22 (36)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHH
Confidence 58999999999776554
No 21
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=36.93 E-value=75 Score=23.89 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=23.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
+.|.-|++||+.|+.=..+|..+..++++
T Consensus 20 dtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 20 DTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45788899999999988888888877544
No 22
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=36.15 E-value=58 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~ 280 (318)
.++..|++|++.|+..++.|=.-+..+++.
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~ 35 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQ 35 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888888888776666655543
No 23
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=35.44 E-value=77 Score=24.29 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
+++.+++.|+..|+.=++.+..+|.++...++
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 35566777777777777777776666654433
No 24
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=34.58 E-value=90 Score=21.58 Aligned_cols=33 Identities=24% Similarity=0.249 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r 283 (318)
+.+.+|+.+++.|++-...|-.++..|+.+...
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~ 54 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQ 54 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888888888777765543
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=33.63 E-value=2.5e+02 Score=24.73 Aligned_cols=28 Identities=0% Similarity=0.004 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 187 SEIKALERQLMQSIETCIAKKKKIILCQ 214 (318)
Q Consensus 187 ~dI~~~e~~l~~t~~~l~~Kk~rl~~~~ 214 (318)
.++..++..+....+.+...+.++..++
T Consensus 32 ~el~~le~~~~~l~~~~~~~~~~l~d~~ 59 (256)
T 3na7_A 32 KDLDKALNDKEAKNKAILNLEEEKLALK 59 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444444444444333
No 26
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=33.56 E-value=70 Score=23.27 Aligned_cols=33 Identities=39% Similarity=0.475 Sum_probs=25.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 249 KEQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (318)
Q Consensus 249 ~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~ 281 (318)
.++.|+.|+.++..||....++-.|...|+...
T Consensus 27 K~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i 59 (70)
T 1gd2_E 27 KEDHLKALETQVVTLKELHSSTTLENDQLRQKV 59 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788999999999988888777777666443
No 27
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=32.72 E-value=1.7e+02 Score=22.61 Aligned_cols=81 Identities=17% Similarity=0.180 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhccccchheeecceeccccCCchhhhHHHHHHHHHHHHHHH
Q 021020 188 EIKALERQLMQSIETCIAKKKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELS 267 (318)
Q Consensus 188 dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i~~L~~EI~~Le~l~ 267 (318)
||..+|..+.+.-.-|..-|.+|..+++.+... | .+.++ ++ +.+-+.++++|++=-
T Consensus 6 ~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D-P-DevNk-~~---------------------~~~R~~~V~~lq~Ki 61 (96)
T 2ic9_A 6 TLKEVQDNITLHEQRLVTTRQKLKDAERAVELD-P-DDVNK-ST---------------------LQSRRAAVSALETKL 61 (96)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-C-CHHHH-HH---------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-cHHHH-HH---------------------HHHHHHHHHHHHHHH
Confidence 455566666655555555566667776654321 1 01111 11 122355677776666
Q ss_pred HHHHHHHHHHHHHHHHHHcCCchhh
Q 021020 268 KQLFLEIYELRQAKEAAAYSRTWRG 292 (318)
Q Consensus 268 ~~L~~el~el~~~~~r~~~s~T~~G 292 (318)
.+|-..+.+............-+.|
T Consensus 62 ~elkr~lAd~v~~~k~~~k~~DpTG 86 (96)
T 2ic9_A 62 GELKRELADLIAAQKLASKPVDPTG 86 (96)
T ss_dssp HHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHhccccccCCCCCCC
Confidence 6666666666654443333333333
No 28
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=30.78 E-value=81 Score=20.65 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIY 275 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~ 275 (318)
++.++|+.|.++||.--..+-..+.
T Consensus 20 eelaaleselqalekklaalksklq 44 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999888875555544443
No 29
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=30.07 E-value=95 Score=18.83 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELR 278 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~ 278 (318)
+.++|+.|+..-|.=..||-.|+..+.
T Consensus 2 evaqlekevaqaeaenyqleqevaqle 28 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLE 28 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 356788888887777777777776654
No 30
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=29.01 E-value=1.2e+02 Score=21.08 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
+.+.+|+.++..|++-...|-.++..|+.+..
T Consensus 22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 22 ERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888776543
No 31
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=28.01 E-value=30 Score=20.91 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEEL 266 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l 266 (318)
+|++|++.|.+||.-
T Consensus 1 qiaaleqkiaaleqk 15 (32)
T 4g1a_A 1 QIAALEQKIAALEQK 15 (32)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHH
Confidence 467888888888764
No 32
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.55 E-value=1.9e+02 Score=21.54 Aligned_cols=48 Identities=8% Similarity=0.295 Sum_probs=26.1
Q ss_pred hheeecceeccccC----CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 233 FKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (318)
Q Consensus 233 ~~~v~~~s~~s~~~----~~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~ 280 (318)
.++.+|..|-..+. ..-+.++..++.+|+.|+.-...+-.++.+++..
T Consensus 50 vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~ 101 (107)
T 1fxk_A 50 VYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101 (107)
T ss_dssp EEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666655433211 0113455666666666666666666666666543
No 33
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=26.94 E-value=1.4e+02 Score=22.34 Aligned_cols=34 Identities=6% Similarity=0.162 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
.++.+|+.||+.|.-.-..+-.++..++.++...
T Consensus 27 ~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~ 60 (83)
T 2xdj_A 27 QQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQI 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
No 34
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.25 E-value=2e+02 Score=27.61 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~ 279 (318)
+.+++++++...|..++.|++++.|++.
T Consensus 32 ~~~~~~~~l~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 32 ELETCKEQLFQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4456677777788899999999999874
No 35
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=24.83 E-value=4.1e+02 Score=25.60 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=17.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 185 DESEIKALERQLMQSIETCIAKKKKIILCQM 215 (318)
Q Consensus 185 t~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~ 215 (318)
.+.||+.+|..+++.-+.=-+-+..+..++.
T Consensus 36 V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~ 66 (411)
T 3ghg_C 36 VDKDLQSLEDILHQVENKTSEVKQLIKAIQL 66 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 3557888887776654443333344444443
No 36
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=24.51 E-value=1.4e+02 Score=18.96 Aligned_cols=31 Identities=29% Similarity=0.365 Sum_probs=23.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
.+++|+.+++.|..=...|-+|+..|+....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENA 32 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 3568888888888778888888877776543
No 37
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=24.17 E-value=1.1e+02 Score=20.97 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=25.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQA 280 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~ 280 (318)
+.+.+|+.++..|+.=...|..++..|+..
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999888888888887653
No 38
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=23.49 E-value=1.7e+02 Score=20.46 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~~~ 281 (318)
++.+|+.|+..|+.-..+|-.++..|+.+.
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~ 53 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEI 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666666666666543
No 39
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.47 E-value=3.2e+02 Score=33.46 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=8.4
Q ss_pred chhhHHHHHhhhHHHHHHH
Q 021020 289 TWRGHMQNLLGYALSIYCV 307 (318)
Q Consensus 289 T~~Gr~~~~~g~~fsiYCv 307 (318)
++.|..+ +.-+|-.||-
T Consensus 2102 ~L~GD~L--LaaafisY~G 2118 (3245)
T 3vkg_A 2102 TVVGDVV--LASAFLAYIG 2118 (3245)
T ss_dssp HHHHHHH--HHHHHHHTGG
T ss_pred hccHHHH--HHHHHHHHcC
Confidence 3444443 3445666763
No 40
>2lw9_A Unconventionnal myosin-X; MYO10 anti-CC, motor protein; NMR {Homo sapiens}
Probab=23.34 E-value=1.8e+02 Score=19.78 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFL-----EIYELRQAKEA 283 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~-----el~el~~~~~r 283 (318)
++|-.|+.||..|...+.+--+ ...+++.+++.
T Consensus 6 EEILRLErEIE~Lqrqke~~~~~L~e~s~~eL~~~RD~ 43 (51)
T 2lw9_A 6 EEILRLEKEIEDLQRMKEQQELSLTEASLQKLQERRDQ 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 6889999999999988655433 34455544443
No 41
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=23.24 E-value=78 Score=25.49 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHhhh
Q 021020 205 AKKKKIILCQMEMD 218 (318)
Q Consensus 205 ~Kk~rl~~~~~~~~ 218 (318)
++++|++..+.+++
T Consensus 124 ~~~~rl~~i~~~~~ 137 (148)
T 3vou_A 124 EVMEKLEAIEKKLA 137 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555444
No 42
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=22.57 E-value=94 Score=19.20 Aligned_cols=20 Identities=30% Similarity=0.519 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQ 269 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~ 269 (318)
+++|++.+.||.+++-+-.|
T Consensus 15 eeeiqaikeeiaaikyliaq 34 (36)
T 1bb1_B 15 EEEIQAIKEEIAAIKYLIAQ 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46777778888777766544
No 43
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=22.33 E-value=1.5e+02 Score=20.86 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~el~~~~ 281 (318)
+.+.+|+.++..|+.-...|-.++..|+.+.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999888888888888887643
No 44
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=21.77 E-value=82 Score=23.19 Aligned_cols=21 Identities=24% Similarity=-0.020 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 021020 259 EVQALEELSKQLFLEIYELRQ 279 (318)
Q Consensus 259 EI~~Le~l~~~L~~el~el~~ 279 (318)
-|+.||.-=.+.=.++.+|++
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqs 61 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQN 61 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 45
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=20.81 E-value=1.2e+02 Score=17.62 Aligned_cols=15 Identities=20% Similarity=0.457 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHH
Q 021020 268 KQLFLEIYELRQAKE 282 (318)
Q Consensus 268 ~~L~~el~el~~~~~ 282 (318)
.+||.|+.+++.+.+
T Consensus 4 delykeledlqerlr 18 (27)
T 3twe_A 4 DELYKELEDLQERLR 18 (27)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777777765443
No 46
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=20.69 E-value=1.4e+02 Score=19.77 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 255 IMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 255 ~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
+|+.+-+.||.+-.+|-.|+..+.++.+.+
T Consensus 21 qlerdeqnlekiianlrdeiarlenevash 50 (52)
T 3he5_B 21 QLERDEQNLEKIIANLRDEIARLENEVASH 50 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444555666666666666666555443
No 47
>1aa0_A Fibritin, gpwac E; bacteriophage T4, structural protein, bacteriophag assembly, attachment protein; 2.20A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=20.53 E-value=3.1e+02 Score=21.50 Aligned_cols=64 Identities=14% Similarity=0.208 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhhhhhcchhhhccccchheeecceeccccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 021020 207 KKKIILCQMEMDRIQGSEEKLKARSFFKRIVGTVVRSVQDDQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKEAAAY 286 (318)
Q Consensus 207 k~rl~~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~s~~~~~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~~ 286 (318)
|-++..+..+..+..|+++...-+|+.. +++ ..+.+|.++.+||+++|.= +.+++...++.+.
T Consensus 23 KGqv~~l~~~i~GTNPNGsTVEERGl~n-----sVk-----~~et~i~~~t~~v~t~k~~-------i~~~e~~vqalq~ 85 (113)
T 1aa0_A 23 KGQVVALNTLVNGTNPNGSTVEERGLTN-----SIK-----ANETNIASVTQEVNTAKGN-------ISSLQGDVQALQE 85 (113)
T ss_dssp HHHHHHHHHHHHCSCTTCSSHHHHCHHH-----HHH-----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHT
T ss_pred eeeEEEeeeeccccCCCCCeeeccccch-----hhh-----ccccchhhhheeecccccc-------hhhhhhhhHHHHh
Confidence 3355555555666555555444455442 111 2345788888888887764 5566655555554
Q ss_pred C
Q 021020 287 S 287 (318)
Q Consensus 287 s 287 (318)
+
T Consensus 86 a 86 (113)
T 1aa0_A 86 A 86 (113)
T ss_dssp T
T ss_pred c
Confidence 3
No 48
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=20.25 E-value=3.4e+02 Score=22.01 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021020 184 IDESEIKALERQLMQSIETCIAKKKKIILCQMEM 217 (318)
Q Consensus 184 Vt~~dI~~~e~~l~~t~~~l~~Kk~rl~~~~~~~ 217 (318)
.|..||.+.++.... +.+-|+|+..++.-.
T Consensus 15 ysp~~i~~iq~y~~~----i~~~r~Rl~eL~~lI 44 (130)
T 3zsu_A 15 YSELQITRIQDYLRD----IEKNAERFADLEVSV 44 (130)
T ss_dssp CCHHHHHHHHHHHHH----HHHHHTTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 357788888766644 455666766666543
Done!