Query 021020
Match_columns 318
No_of_seqs 127 out of 161
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 11:34:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021020.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021020hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 44.5 86 0.0062 27.4 11.2 33 187-219 6-40 (362)
2 d1fxka_ a.2.5.1 (A:) Prefoldin 32.3 79 0.0057 22.4 10.8 53 230-282 47-103 (107)
3 d2azeb1 e.63.1.2 (B:201-301) T 29.8 45 0.0033 24.1 5.4 34 252-285 9-42 (101)
4 d2azeb1 e.63.1.2 (B:201-301) T 28.9 41 0.003 24.3 5.1 33 252-284 2-34 (101)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 19.2 16 0.0011 21.5 0.7 22 148-169 11-32 (34)
6 d1nkpa_ a.38.1.1 (A:) Myc prot 18.6 1.3E+02 0.0096 20.2 9.0 33 250-282 51-83 (88)
7 d1nlwa_ a.38.1.1 (A:) Mad prot 16.7 1.2E+02 0.0091 19.9 5.4 32 250-281 46-77 (79)
8 d1io1a_ e.32.1.1 (A:) Phase 1 16.6 98 0.0071 25.0 5.8 15 189-203 19-33 (395)
9 d1ydxa2 d.287.1.2 (A:194-374) 16.5 63 0.0046 23.9 4.1 18 253-270 155-172 (181)
10 d1ydxa1 d.287.1.2 (A:1-193) Bi 13.8 81 0.0059 23.3 4.1 25 251-275 158-182 (193)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=44.46 E-value=86 Score=27.43 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhh
Q 021020 187 SEIKALERQLMQSIE--TCIAKKKKIILCQMEMDR 219 (318)
Q Consensus 187 ~dI~~~e~~l~~t~~--~l~~Kk~rl~~~~~~~~~ 219 (318)
.+|+.+.+++..... .+..||+|+..++.+++.
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~~lsd 40 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQ 40 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcC
Confidence 456666666655544 357788899999877653
No 2
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.33 E-value=79 Score=22.36 Aligned_cols=53 Identities=8% Similarity=0.246 Sum_probs=29.8
Q ss_pred ccchheeecceeccccC----CchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 230 RSFFKRIVGTVVRSVQD----DQKEQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 230 ~~~~~~v~~~s~~s~~~----~~~~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
..-.+|.+|+.+-.-+. ..-...+..++.+|+.|+.-...+-.++.+++...+
T Consensus 47 d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l~ 103 (107)
T d1fxka_ 47 DAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQ 103 (107)
T ss_dssp TCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666654432110 011255666777777777777777777777665443
No 3
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.75 E-value=45 Score=24.11 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAAA 285 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~~ 285 (318)
|+..|++|-+.|..+.+.+-.++.++....+..+
T Consensus 9 El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k 42 (101)
T d2azeb1 9 DLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQR 42 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Confidence 4444444444444444444555555554444443
No 4
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.87 E-value=41 Score=24.30 Aligned_cols=33 Identities=12% Similarity=0.066 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 252 DIKIMEAEVQALEELSKQLFLEIYELRQAKEAA 284 (318)
Q Consensus 252 ~i~~L~~EI~~Le~l~~~L~~el~el~~~~~r~ 284 (318)
++.+|++|++.|+..++.|=.-...++..-+..
T Consensus 2 r~~~L~~El~~L~~~E~~LD~li~~~~~~L~~l 34 (101)
T d2azeb1 2 RLEGLTQDLRQLQESEQQLDHLMNICTTQLRLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999887777777654443
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.17 E-value=16 Score=21.48 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=16.9
Q ss_pred chhhheehhhHHHHHHhhhccc
Q 021020 148 QLVSRIGVIGVTVMAVLAGFGA 169 (318)
Q Consensus 148 ~~l~RigViGVtlmAiLSGfga 169 (318)
..+.-|+++|+..-+.-||.|+
T Consensus 11 ~G~~vi~~vG~FfYGsYsGlGS 32 (34)
T d2axtj1 11 AGMGVIVIVGLFFYGAYAGLGS 32 (34)
T ss_dssp HHHHHHHHHHHHHHHTTTSTTS
T ss_pred hhhhhHhheeeeeeeeeccccc
Confidence 4456677888888888888886
No 6
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.65 E-value=1.3e+02 Score=20.21 Aligned_cols=33 Identities=24% Similarity=0.095 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAKE 282 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~~ 282 (318)
.+.|..|+.+++.|+.-..++-.+...|+.+.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468889998888888877777777777665543
No 7
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.66 E-value=1.2e+02 Score=19.90 Aligned_cols=32 Identities=22% Similarity=0.128 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 250 EQDIKIMEAEVQALEELSKQLFLEIYELRQAK 281 (318)
Q Consensus 250 ~~~i~~L~~EI~~Le~l~~~L~~el~el~~~~ 281 (318)
.+.|..|+.++..++.-..+|..+..+|+.+.
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l 77 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36888999888888888888888877776543
No 8
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=16.63 E-value=98 Score=24.99 Aligned_cols=15 Identities=13% Similarity=0.029 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHH
Q 021020 189 IKALERQLMQSIETC 203 (318)
Q Consensus 189 I~~~e~~l~~t~~~l 203 (318)
++.+|..|.+..++|
T Consensus 19 lqtae~al~~~~~iL 33 (395)
T d1io1a_ 19 AQTTEGALNEINNNL 33 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666666666554
No 9
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=16.50 E-value=63 Score=23.85 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021020 253 IKIMEAEVQALEELSKQL 270 (318)
Q Consensus 253 i~~L~~EI~~Le~l~~~L 270 (318)
|..++++++.|+++++.|
T Consensus 155 i~~~~~~i~~l~~lk~~L 172 (181)
T d1ydxa2 155 LDQYKKELSSLTVIRDTL 172 (181)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 10
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=13.82 E-value=81 Score=23.33 Aligned_cols=25 Identities=4% Similarity=0.231 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 021020 251 QDIKIMEAEVQALEELSKQLFLEIY 275 (318)
Q Consensus 251 ~~i~~L~~EI~~Le~l~~~L~~el~ 275 (318)
+.|..+++|++.|+++.+.|..++-
T Consensus 158 ~~i~~~~~~i~~l~~~~~~ll~~lf 182 (193)
T d1ydxa1 158 ERLENLASLIEINRKLRDEYAHKLF 182 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555443
Done!