Query 021022
Match_columns 318
No_of_seqs 276 out of 1384
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 11:36:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021022.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021022hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 1.9E-54 6.6E-59 372.1 12.6 135 62-207 8-142 (143)
2 2k2d_A Ring finger and CHY zin 99.9 1.1E-27 3.7E-32 187.6 1.7 71 248-318 1-71 (79)
3 2ecm_A Ring finger and CHY zin 99.3 9.1E-13 3.1E-17 92.9 4.7 52 204-256 3-54 (55)
4 1iym_A EL5; ring-H2 finger, ub 99.2 4.9E-12 1.7E-16 89.3 4.4 49 206-256 5-54 (55)
5 2ecl_A Ring-box protein 2; RNF 99.2 5.1E-12 1.8E-16 97.3 4.8 52 205-257 25-76 (81)
6 2ep4_A Ring finger protein 24; 99.2 6.7E-12 2.3E-16 93.8 4.7 56 201-258 10-65 (74)
7 2kiz_A E3 ubiquitin-protein li 99.2 8.7E-12 3E-16 92.0 4.6 53 203-257 11-63 (69)
8 1x4j_A Ring finger protein 38; 99.2 4.6E-12 1.6E-16 95.3 3.0 52 204-257 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.2 1.3E-11 4.5E-16 99.4 4.7 55 204-258 23-95 (114)
10 2l0b_A E3 ubiquitin-protein li 99.2 1.5E-11 5.1E-16 96.4 4.3 52 204-257 38-89 (91)
11 2ect_A Ring finger protein 126 99.1 2.3E-11 7.9E-16 91.7 4.4 52 204-257 13-64 (78)
12 1g25_A CDK-activating kinase a 99.1 4.7E-11 1.6E-15 87.3 5.1 52 206-257 3-55 (65)
13 3ng2_A RNF4, snurf, ring finge 99.1 2.7E-11 9.1E-16 89.3 3.7 53 204-257 8-63 (71)
14 2ea6_A Ring finger protein 4; 99.1 3E-11 1E-15 88.2 3.9 52 204-256 13-67 (69)
15 2xeu_A Ring finger protein 4; 99.1 4.5E-11 1.6E-15 86.0 3.8 51 206-257 3-56 (64)
16 2ct2_A Tripartite motif protei 99.1 1.1E-10 3.7E-15 89.3 4.9 53 205-257 14-68 (88)
17 1chc_A Equine herpes virus-1 r 99.1 7.9E-11 2.7E-15 86.4 3.8 50 205-258 4-53 (68)
18 3dpl_R Ring-box protein 1; ubi 99.0 1.8E-10 6.1E-15 94.0 5.3 34 222-256 67-100 (106)
19 1t1h_A Gspef-atpub14, armadill 99.0 3.8E-10 1.3E-14 85.0 6.3 50 204-257 6-55 (78)
20 1e4u_A Transcriptional repress 99.0 3.8E-11 1.3E-15 92.7 0.6 59 205-265 10-70 (78)
21 2d8t_A Dactylidin, ring finger 99.0 1.9E-10 6.5E-15 85.6 4.0 49 204-257 13-61 (71)
22 2csy_A Zinc finger protein 183 99.0 2.5E-10 8.5E-15 86.9 4.1 48 204-256 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.0 3.8E-10 1.3E-14 83.6 4.9 50 204-257 18-69 (73)
24 2ecn_A Ring finger protein 141 99.0 3.3E-11 1.1E-15 89.1 -0.9 50 204-259 13-62 (70)
25 2djb_A Polycomb group ring fin 99.0 2.6E-10 9E-15 85.1 3.4 49 205-257 14-62 (72)
26 2ecy_A TNF receptor-associated 99.0 3.2E-10 1.1E-14 83.1 3.6 49 205-257 14-62 (66)
27 4ap4_A E3 ubiquitin ligase RNF 98.9 5.7E-10 1.9E-14 90.5 4.1 52 205-257 6-60 (133)
28 2yur_A Retinoblastoma-binding 98.9 3.7E-10 1.2E-14 85.0 2.7 51 205-259 14-66 (74)
29 3lrq_A E3 ubiquitin-protein li 98.9 6.4E-10 2.2E-14 88.5 3.7 49 206-257 22-70 (100)
30 4ayc_A E3 ubiquitin-protein li 98.9 6.6E-10 2.3E-14 93.1 4.0 47 207-258 54-100 (138)
31 3fl2_A E3 ubiquitin-protein li 98.9 1.1E-09 3.9E-14 89.6 4.5 48 206-257 52-99 (124)
32 2ysj_A Tripartite motif-contai 98.9 1.3E-09 4.6E-14 78.9 4.3 44 204-251 18-63 (63)
33 2d8s_A Cellular modulator of i 98.8 1.8E-09 6.1E-14 83.8 4.1 53 203-257 12-70 (80)
34 2ecw_A Tripartite motif-contai 98.8 2.5E-09 8.4E-14 80.6 4.7 49 205-257 18-71 (85)
35 2egp_A Tripartite motif-contai 98.8 6.1E-10 2.1E-14 83.6 1.1 49 205-257 11-65 (79)
36 2ecj_A Tripartite motif-contai 98.8 2E-09 7E-14 76.1 3.6 43 205-251 14-58 (58)
37 4a0k_B E3 ubiquitin-protein li 98.8 5.1E-10 1.8E-14 93.1 0.5 50 206-256 48-111 (117)
38 2y43_A E3 ubiquitin-protein li 98.8 2.5E-09 8.4E-14 84.3 4.2 48 206-257 22-69 (99)
39 3ztg_A E3 ubiquitin-protein li 98.8 2.4E-09 8.1E-14 83.0 3.8 48 205-256 12-61 (92)
40 2ckl_A Polycomb group ring fin 98.8 3E-09 1E-13 85.2 4.3 48 206-257 15-62 (108)
41 2ecv_A Tripartite motif-contai 98.8 2.8E-09 9.5E-14 80.3 3.9 50 204-257 17-71 (85)
42 2ckl_B Ubiquitin ligase protei 98.8 3.3E-09 1.1E-13 90.9 4.5 49 206-257 54-102 (165)
43 3l11_A E3 ubiquitin-protein li 98.8 1.5E-09 5E-14 87.8 1.6 48 206-257 15-62 (115)
44 1rmd_A RAG1; V(D)J recombinati 98.8 2.8E-09 9.5E-14 86.2 3.2 48 206-257 23-70 (116)
45 1z6u_A NP95-like ring finger p 98.8 2.3E-09 8E-14 91.7 2.8 48 206-257 78-125 (150)
46 4ap4_A E3 ubiquitin ligase RNF 98.7 6E-09 2.1E-13 84.4 3.7 53 204-257 70-125 (133)
47 3hct_A TNF receptor-associated 98.7 7.2E-09 2.5E-13 84.4 3.6 48 206-257 18-65 (118)
48 1jm7_A BRCA1, breast cancer ty 98.7 7.3E-09 2.5E-13 82.5 3.4 47 206-256 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.6 3.1E-08 1.1E-12 73.1 3.1 50 203-257 5-57 (64)
50 2c2l_A CHIP, carboxy terminus 98.5 7.3E-08 2.5E-12 87.0 6.0 52 202-257 204-255 (281)
51 2kr4_A Ubiquitin conjugation f 98.5 6.3E-08 2.2E-12 75.2 3.9 49 204-257 12-60 (85)
52 1bor_A Transcription factor PM 98.5 2.1E-08 7.1E-13 71.9 1.0 45 204-256 4-48 (56)
53 3knv_A TNF receptor-associated 98.5 2.7E-08 9.3E-13 84.3 1.2 47 205-255 30-76 (141)
54 2vje_B MDM4 protein; proto-onc 98.5 5.2E-08 1.8E-12 71.6 2.4 49 204-257 5-56 (63)
55 2kre_A Ubiquitin conjugation f 98.5 1.1E-07 3.7E-12 76.3 4.5 49 204-257 27-75 (100)
56 1jm7_B BARD1, BRCA1-associated 98.5 3.2E-08 1.1E-12 80.5 1.3 44 206-256 22-66 (117)
57 4ic3_A E3 ubiquitin-protein li 98.5 5.8E-08 2E-12 73.2 2.5 43 206-257 24-67 (74)
58 2ct0_A Non-SMC element 1 homol 98.4 1.2E-07 4E-12 73.0 3.6 49 206-257 15-64 (74)
59 1wgm_A Ubiquitin conjugation f 98.4 1.5E-07 5.1E-12 75.3 4.3 49 204-257 20-69 (98)
60 3hcs_A TNF receptor-associated 98.4 1.1E-07 3.6E-12 81.7 3.3 48 206-257 18-65 (170)
61 2y1n_A E3 ubiquitin-protein li 98.3 3.2E-07 1.1E-11 90.1 4.8 49 205-257 331-379 (389)
62 2yu4_A E3 SUMO-protein ligase 98.3 4.9E-07 1.7E-11 71.2 4.8 46 205-254 6-59 (94)
63 1wim_A KIAA0161 protein; ring 98.3 6.3E-07 2.1E-11 70.1 5.3 49 205-254 4-61 (94)
64 2ecg_A Baculoviral IAP repeat- 98.2 4.2E-07 1.4E-11 68.5 2.9 43 206-257 25-68 (75)
65 2ea5_A Cell growth regulator w 98.2 7.5E-07 2.6E-11 66.6 4.0 46 204-258 13-59 (68)
66 2f42_A STIP1 homology and U-bo 98.2 1.4E-06 5E-11 77.1 5.8 50 204-257 104-153 (179)
67 2yho_A E3 ubiquitin-protein li 98.1 8.4E-07 2.9E-11 68.1 2.1 44 206-258 18-62 (79)
68 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.6E-06 5.5E-11 63.7 2.9 51 202-256 2-58 (60)
69 3htk_C E3 SUMO-protein ligase 97.9 5.5E-06 1.9E-10 77.7 3.2 50 204-256 179-231 (267)
70 3k1l_B Fancl; UBC, ring, RWD, 97.8 3.9E-06 1.3E-10 81.6 1.2 53 204-256 306-372 (381)
71 3t6p_A Baculoviral IAP repeat- 97.7 9E-06 3.1E-10 78.5 1.5 43 206-257 295-338 (345)
72 3vk6_A E3 ubiquitin-protein li 97.5 8.1E-05 2.8E-09 60.5 4.1 49 208-259 3-51 (101)
73 2bay_A PRE-mRNA splicing facto 97.4 8.6E-05 2.9E-09 54.4 3.2 48 205-257 2-50 (61)
74 3nw0_A Non-structural maintena 96.1 0.0027 9.2E-08 58.2 3.1 49 206-257 180-229 (238)
75 2jrp_A Putative cytoplasmic pr 90.9 0.084 2.9E-06 41.2 1.6 33 123-155 20-60 (81)
76 2jun_A Midline-1; B-BOX, TRIM, 89.9 0.12 4.2E-06 40.0 1.8 33 206-240 3-36 (101)
77 2ko5_A Ring finger protein Z; 88.3 0.22 7.5E-06 40.1 2.2 45 206-257 28-73 (99)
78 2jne_A Hypothetical protein YF 88.0 0.22 7.4E-06 40.2 2.0 33 123-155 50-90 (101)
79 2lbm_A Transcriptional regulat 87.9 0.71 2.4E-05 39.3 5.3 50 201-254 58-117 (142)
80 3a43_A HYPD, hydrogenase nicke 87.7 0.19 6.5E-06 42.3 1.7 37 282-318 68-123 (139)
81 2ysm_A Myeloid/lymphoid or mix 87.0 0.24 8.2E-06 39.5 1.8 83 168-254 9-104 (111)
82 2kdx_A HYPA, hydrogenase/ureas 82.9 0.53 1.8E-05 38.2 2.1 36 281-318 70-106 (119)
83 3v43_A Histone acetyltransfera 80.3 0.33 1.1E-05 39.0 -0.0 74 176-253 22-111 (112)
84 2ysm_A Myeloid/lymphoid or mix 79.9 3.4 0.00012 32.7 5.8 70 120-193 6-82 (111)
85 1weo_A Cellulose synthase, cat 77.5 3.7 0.00013 32.6 5.1 56 201-256 11-69 (93)
86 2jne_A Hypothetical protein YF 77.4 0.31 1E-05 39.4 -1.1 67 205-300 31-100 (101)
87 2kwj_A Zinc finger protein DPF 77.0 0.23 7.8E-06 40.2 -2.0 83 167-255 2-109 (114)
88 2lri_C Autoimmune regulator; Z 70.0 3.2 0.00011 30.5 3.0 45 206-254 12-59 (66)
89 4bbq_A Lysine-specific demethy 65.9 1 3.5E-05 35.9 -0.5 29 225-253 78-113 (117)
90 3ql9_A Transcriptional regulat 65.1 6.5 0.00022 32.8 4.2 50 201-254 52-111 (129)
91 1we9_A PHD finger family prote 60.3 1.7 5.8E-05 31.2 -0.2 50 205-254 5-58 (64)
92 2e6s_A E3 ubiquitin-protein li 54.5 5.8 0.0002 30.0 2.0 64 177-253 7-76 (77)
93 2k16_A Transcription initiatio 52.8 2.8 9.6E-05 30.9 -0.1 48 206-256 18-70 (75)
94 2dkt_A Ring finger and CHY zin 49.8 5.4 0.00019 34.0 1.2 30 147-176 99-128 (143)
95 2l5u_A Chromodomain-helicase-D 49.4 10 0.00035 27.1 2.5 47 204-254 9-58 (61)
96 2jrp_A Putative cytoplasmic pr 48.8 10 0.00035 29.3 2.6 58 122-193 3-64 (81)
97 3j20_Y 30S ribosomal protein S 48.8 8.1 0.00028 27.0 1.8 12 131-142 16-27 (50)
98 1f62_A Transcription factor WS 48.6 11 0.00038 25.6 2.5 45 208-254 2-50 (51)
99 3uk3_C Zinc finger protein 217 42.1 32 0.0011 22.0 4.0 16 245-260 4-19 (57)
100 3lqh_A Histone-lysine N-methyl 41.4 9.9 0.00034 33.3 1.6 50 207-257 3-66 (183)
101 2pv0_B DNA (cytosine-5)-methyl 38.5 22 0.00075 34.7 3.7 71 181-255 68-149 (386)
102 1mm2_A MI2-beta; PHD, zinc fin 37.9 9 0.00031 27.4 0.7 48 204-255 7-57 (61)
103 1zfo_A LAsp-1; LIM domain, zin 37.3 8.7 0.0003 23.9 0.4 30 205-237 2-31 (31)
104 2fiy_A Protein FDHE homolog; F 36.8 21 0.00073 33.6 3.2 25 119-143 206-231 (309)
105 2k4x_A 30S ribosomal protein S 36.4 22 0.00076 25.2 2.5 9 134-142 18-26 (55)
106 3i2d_A E3 SUMO-protein ligase 34.8 33 0.0011 33.3 4.3 48 206-256 249-299 (371)
107 2ayj_A 50S ribosomal protein L 34.6 38 0.0013 24.5 3.5 29 115-143 13-42 (56)
108 1bbo_A Human enhancer-binding 34.5 29 0.001 22.2 2.8 14 246-259 2-15 (57)
109 3u5n_A E3 ubiquitin-protein li 34.3 10 0.00035 33.1 0.6 46 204-255 5-55 (207)
110 2kdx_A HYPA, hydrogenase/ureas 34.2 15 0.0005 29.5 1.4 14 131-144 70-83 (119)
111 4fo9_A E3 SUMO-protein ligase 33.5 36 0.0012 32.9 4.3 48 206-256 215-265 (360)
112 3mjh_B Early endosome antigen 32.8 20 0.00069 23.3 1.6 14 246-259 6-19 (34)
113 4gzn_C ZFP-57, zinc finger pro 32.7 21 0.00073 24.9 1.9 16 245-260 4-19 (60)
114 3u5c_f 40S ribosomal protein S 32.7 20 0.00069 30.2 2.1 24 131-154 115-146 (152)
115 2kgg_A Histone demethylase jar 32.5 12 0.00042 25.8 0.6 45 208-252 4-52 (52)
116 3lqh_A Histone-lysine N-methyl 32.3 27 0.00092 30.5 2.9 55 148-214 4-62 (183)
117 4esj_A Type-2 restriction enzy 31.8 19 0.00066 33.3 1.9 19 135-153 35-63 (257)
118 1klr_A Zinc finger Y-chromosom 31.5 38 0.0013 18.0 2.6 16 245-260 2-17 (30)
119 1wep_A PHF8; structural genomi 31.2 33 0.0011 25.4 2.9 50 206-256 12-65 (79)
120 2jvx_A NF-kappa-B essential mo 31.2 15 0.00052 22.9 0.8 16 245-260 3-18 (28)
121 2egq_A FHL1 protein; LIM domai 31.0 46 0.0016 23.6 3.6 42 205-257 14-58 (77)
122 2yql_A PHD finger protein 21A; 30.3 5.9 0.0002 27.7 -1.4 46 204-253 7-55 (56)
123 2ee8_A Protein ODD-skipped-rel 29.3 25 0.00087 25.7 2.0 17 244-260 44-60 (106)
124 4ayb_P DNA-directed RNA polyme 29.2 27 0.00093 24.5 1.9 27 145-171 2-31 (48)
125 3lpe_B DNA-directed RNA polyme 29.2 21 0.00071 25.9 1.4 19 123-142 3-21 (59)
126 4gut_A Lysine-specific histone 29.0 85 0.0029 32.8 6.5 82 196-292 3-103 (776)
127 1znf_A 31ST zinc finger from X 28.6 35 0.0012 18.0 2.1 15 246-260 2-16 (27)
128 3o36_A Transcription intermedi 28.5 16 0.00055 31.2 0.8 46 206-255 4-52 (184)
129 1x4s_A Protein FON, zinc finge 28.4 23 0.0008 25.8 1.5 24 120-143 10-35 (59)
130 1vd4_A Transcription initiatio 28.1 35 0.0012 23.1 2.4 8 137-144 17-24 (62)
131 1ryq_A DNA-directed RNA polyme 28.0 28 0.00094 26.2 1.9 24 119-143 9-32 (69)
132 2lv9_A Histone-lysine N-methyl 27.3 54 0.0019 25.4 3.6 48 207-258 29-80 (98)
133 3f6q_B LIM and senescent cell 27.2 35 0.0012 23.6 2.3 43 205-258 10-52 (72)
134 2ku3_A Bromodomain-containing 27.0 21 0.00072 26.4 1.1 50 203-253 13-65 (71)
135 3a1b_A DNA (cytosine-5)-methyl 26.6 27 0.00092 30.1 1.9 53 186-243 59-114 (159)
136 2kmk_A Zinc finger protein GFI 26.1 55 0.0019 22.3 3.2 40 244-294 28-67 (82)
137 1twf_L ABC10-alpha, DNA-direct 25.8 33 0.0011 25.6 2.0 8 164-171 46-53 (70)
138 2adr_A ADR1; transcription reg 25.6 60 0.002 21.0 3.2 14 246-259 3-16 (60)
139 1qyp_A RNA polymerase II; tran 25.5 34 0.0012 23.8 2.0 32 135-170 16-50 (57)
140 3shb_A E3 ubiquitin-protein li 25.4 96 0.0033 23.2 4.6 21 171-191 31-52 (77)
141 2lce_A B-cell lymphoma 6 prote 25.3 57 0.0019 22.2 3.1 14 245-258 17-30 (74)
142 1ard_A Yeast transcription fac 24.7 44 0.0015 17.8 2.0 16 245-260 2-17 (29)
143 1rim_A E6APC2 peptide; E6-bind 24.6 63 0.0021 18.5 2.8 16 245-260 2-17 (33)
144 1wil_A KIAA1045 protein; ring 24.5 45 0.0015 26.2 2.6 32 204-240 13-47 (89)
145 2drp_A Protein (tramtrack DNA- 24.4 14 0.00049 24.7 -0.2 9 162-170 39-47 (66)
146 2m0e_A Zinc finger and BTB dom 24.4 46 0.0016 17.5 2.0 16 245-260 2-17 (29)
147 1g47_A Pinch protein; LIM doma 24.3 56 0.0019 23.1 3.0 43 204-257 9-51 (77)
148 3v2d_5 50S ribosomal protein L 24.2 30 0.001 25.1 1.4 29 283-316 29-57 (60)
149 1x5w_A Zinc finger protein 64, 23.7 37 0.0013 23.0 1.9 31 245-275 37-67 (70)
150 3u6p_A Formamidopyrimidine-DNA 23.6 33 0.0011 31.5 2.0 19 135-153 246-272 (273)
151 3asl_A E3 ubiquitin-protein li 23.2 1.3E+02 0.0045 21.8 4.9 36 156-192 9-45 (70)
152 2xzf_A Formamidopyrimidine-DNA 22.9 35 0.0012 31.2 2.0 19 135-153 243-269 (271)
153 1x63_A Skeletal muscle LIM-pro 22.8 74 0.0025 22.7 3.5 42 205-257 14-55 (82)
154 1k3x_A Endonuclease VIII; hydr 22.6 36 0.0012 31.0 2.0 19 135-153 235-261 (262)
155 1qxf_A GR2, 30S ribosomal prot 22.5 38 0.0013 25.3 1.7 36 120-155 6-47 (66)
156 1x4l_A Skeletal muscle LIM-pro 22.5 45 0.0015 23.4 2.2 40 206-256 5-46 (72)
157 1p7a_A BF3, BKLF, kruppel-like 22.4 44 0.0015 19.2 1.8 17 244-260 10-26 (37)
158 1fp0_A KAP-1 corepressor; PHD 22.4 32 0.0011 26.8 1.4 47 204-254 23-72 (88)
159 2yqq_A Zinc finger HIT domain- 22.3 39 0.0013 24.3 1.7 16 137-153 15-30 (56)
160 1x68_A FHL5 protein; four-and- 22.3 82 0.0028 22.3 3.6 68 206-308 5-74 (76)
161 2yt5_A Metal-response element- 22.3 59 0.002 22.9 2.7 25 145-169 5-29 (66)
162 1k82_A Formamidopyrimidine-DNA 22.3 37 0.0012 31.1 2.0 19 135-153 241-267 (268)
163 1ee8_A MUTM (FPG) protein; bet 22.1 37 0.0013 31.0 2.0 19 135-153 236-262 (266)
164 1paa_A Yeast transcription fac 21.9 50 0.0017 17.8 1.9 16 245-260 2-17 (30)
165 3o70_A PHD finger protein 13; 21.8 17 0.00059 26.6 -0.3 49 204-254 17-67 (68)
166 2emz_A ZFP-95, zinc finger pro 21.7 1E+02 0.0034 18.8 3.5 18 244-261 11-28 (46)
167 2puy_A PHD finger protein 21A; 21.5 17 0.00058 25.6 -0.3 46 205-254 4-52 (60)
168 1vq8_Z 50S ribosomal protein L 21.5 33 0.0011 26.3 1.3 35 131-176 24-58 (83)
169 6rxn_A Rubredoxin; electron tr 21.2 42 0.0014 23.1 1.6 28 144-171 2-38 (46)
170 2elr_A Zinc finger protein 406 21.2 54 0.0018 18.7 2.0 16 245-260 9-24 (36)
171 1x4k_A Skeletal muscle LIM-pro 21.2 76 0.0026 22.0 3.2 41 206-257 5-45 (72)
172 1wyh_A SLIM 2, skeletal muscle 20.8 61 0.0021 22.5 2.6 41 206-257 5-45 (72)
173 2zjr_Z 50S ribosomal protein L 20.8 47 0.0016 24.0 1.9 29 283-316 29-57 (60)
174 2gmg_A Hypothetical protein PF 20.5 47 0.0016 26.8 2.0 32 283-315 66-97 (105)
175 1x6e_A Zinc finger protein 24; 20.4 46 0.0016 22.7 1.8 12 246-257 43-54 (72)
176 2kvf_A Zinc finger and BTB dom 20.3 36 0.0012 18.2 1.0 15 245-259 3-17 (28)
177 2v3b_B Rubredoxin 2, rubredoxi 20.3 56 0.0019 23.1 2.2 12 144-155 1-12 (55)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=1.9e-54 Score=372.10 Aligned_cols=135 Identities=41% Similarity=1.022 Sum_probs=128.5
Q ss_pred hhhccCCCccCCccccccceeEcCCCCCeecCcchHhhhhcCCCcCccCCCCCCCccCceeecCCCCccccccccCcCCC
Q 021022 62 ELLRKGFMEYGCQHYRRRCRIRAPCCNEIFDCRHCHNEAMNNINVDQKLRHDIPRHEVNQVICSLCGTEQKVQQVCVNCG 141 (318)
Q Consensus 62 ~~~~~~~~~~gC~HY~R~c~i~~pCC~~~y~Cr~CHde~~~~~~~~~~~~H~ldR~~v~~v~C~~C~~eQ~v~~~C~~Cg 141 (318)
..+|++.+++||+||+|+|+|+||||++|||||+||||++ +|+++|+++++|+||+|+++|++++.|++||
T Consensus 8 ~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~---------dH~l~r~~~~~vlCg~C~~~q~~~~~C~~Cg 78 (143)
T 2dkt_A 8 GVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE---------DHQLDRFKVKEVQCINCEKLQHAQQTCEDCS 78 (143)
T ss_dssp CCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS---------SSCCCSSSCCCEEESSSCCEECSCSBCSSSC
T ss_pred cccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc---------ccccchhccceeeecccCccccccCcCCCCC
Confidence 4457788899999999999999999999999999999975 7999999999999999999999999999999
Q ss_pred CccceEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccceeeccccccccccCCCCCC
Q 021022 142 VCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVEGAMHH 207 (318)
Q Consensus 142 ~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Cie~~~~~ 207 (318)
+.||+|||+|||||| ++|+||||++|||||+|+++|||||++||+|||++|+++|+|+|++++.
T Consensus 79 ~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 79 TLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp CBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred ccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999997 4699999999999999999999999999999999999999999998864
No 2
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=1.1e-27 Score=187.62 Aligned_cols=71 Identities=48% Similarity=0.832 Sum_probs=38.1
Q ss_pred CCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCccccceeeeccCCCCCCccccccCC
Q 021022 248 CPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 318 (318)
Q Consensus 248 CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~~~ 318 (318)
||+|+|++.||+.+|++||++|+++|||++|++++++|+||||+++|.++||||||||+.|+||||++++|
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~CnDC~~~s~v~~h~lg~kC~~C~SyNTr~~~G 71 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 71 (79)
T ss_dssp --------------------------------CCEEEEEESSSCCEEEEECCTTCCCCTTTSCCCEEESCC
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECCCCCCCccCCceeecccCcCCCCcCeEecCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999976
No 3
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.33 E-value=9.1e-13 Score=92.88 Aligned_cols=52 Identities=38% Similarity=0.911 Sum_probs=44.9
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
+.+..||||++.+.++...+++++|||.||..|+.+|++.. .+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence 45688999999876666778899999999999999999864 89999998764
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.24 E-value=4.9e-12 Score=89.27 Aligned_cols=49 Identities=31% Similarity=0.777 Sum_probs=41.0
Q ss_pred CCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
...|+||++. +...+.++.++ |||.||..|+.+|++. +.+||+||+.+.
T Consensus 5 ~~~C~IC~~~-~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE-LEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp SCCCTTTCCC-CCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCcCccCCcc-ccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 5789999997 44455677787 9999999999999975 689999998764
No 5
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=5.1e-12 Score=97.32 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
++..||||++++..+...+++++|||.||.+||.+||+. +.+||+||+++..
T Consensus 25 ~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 25 VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV 76 (81)
T ss_dssp TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence 356788888865443333444569999999999999985 5799999998763
No 6
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=6.7e-12 Score=93.79 Aligned_cols=56 Identities=34% Similarity=0.776 Sum_probs=46.5
Q ss_pred cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
.+...+..|+||++. +.....+++|||||.||..|+.+|++. +.+||+||+.+..+
T Consensus 10 ~~~~~~~~C~IC~~~-~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 10 KELNLHELCAVCLED-FKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CCCCCSCBCSSSCCB-CCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred ccCCCCCCCcCCCcc-cCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 344567899999996 555667788899999999999999985 46999999998764
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.21 E-value=8.7e-12 Score=91.98 Aligned_cols=53 Identities=28% Similarity=0.659 Sum_probs=44.4
Q ss_pred CCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 203 GAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 203 ~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
......|+||++. +.....++.+||||.||..|+.+|++. +.+||+||..+..
T Consensus 11 ~~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 11 EDTEEKCTICLSI-LEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp TTCCCSBTTTTBC-CCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred CCCCCCCeeCCcc-ccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3456789999996 555567889999999999999999985 4789999998864
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.6e-12 Score=95.28 Aligned_cols=52 Identities=35% Similarity=0.715 Sum_probs=44.3
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....|+||++. +.....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCD-FESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEE-CCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcc-cCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 446789999996 555667889999999999999999985 5799999998865
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.18 E-value=1.3e-11 Score=99.39 Aligned_cols=55 Identities=27% Similarity=0.469 Sum_probs=42.4
Q ss_pred CCCCCCcccccccccCC--------------ceeEEcCCCCccchHHHHHHHh----cCCCCCCCCCcccCch
Q 021022 204 AMHHDCPVCCEYLFETR--------------QDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKSVCDM 258 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~--------------~~v~~LpCGH~fH~~Cl~~wl~----~~~~~CPiCrks~~d~ 258 (318)
..+..||||++.|.... ..+++++|||.||..||.+|+. ..+.+||+||+.+...
T Consensus 23 ~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 23 APEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 34578999999764321 2345889999999999999994 2357899999988754
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1.5e-11 Score=96.39 Aligned_cols=52 Identities=27% Similarity=0.662 Sum_probs=43.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..|+||++. +.....++.|||||.||..|+.+|++. +.+||+||+.+..
T Consensus 38 ~~~~~C~IC~~~-~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSE-YVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEE-CCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred CCCCCCcccChh-hcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence 346789999996 555567888999999999999999984 5799999998753
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.15 E-value=2.3e-11 Score=91.73 Aligned_cols=52 Identities=35% Similarity=0.802 Sum_probs=43.9
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....|+||++. +.....++.|+|||.||..||.+|++. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~-~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKED-YALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSC-CCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcc-ccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCC
Confidence 346799999996 555567788999999999999999974 5899999999875
No 12
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.13 E-value=4.7e-11 Score=87.33 Aligned_cols=52 Identities=23% Similarity=0.560 Sum_probs=42.2
Q ss_pred CCCCccccc-ccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCE-YLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE-~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++ .+......+++++|||+||..|+.+|+.....+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 6555444446789999999999999976566789999998864
No 13
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.12 E-value=2.7e-11 Score=89.33 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=43.1
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++.+.+. ...++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4467899999975442 244588999999999999999985 4799999998864
No 14
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=88.21 Aligned_cols=52 Identities=25% Similarity=0.674 Sum_probs=42.3
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
.....||||++.+.+. ...+++++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3467899999975442 234588999999999999999985 579999999875
No 15
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.10 E-value=4.5e-11 Score=86.05 Aligned_cols=51 Identities=25% Similarity=0.699 Sum_probs=42.0
Q ss_pred CCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++.+.+. .+.++.++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 56899999975442 244578999999999999999985 5899999998864
No 16
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.1e-10 Score=89.30 Aligned_cols=53 Identities=34% Similarity=0.706 Sum_probs=43.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~d 257 (318)
....||||++.+..+...+++++|||+||..|+.+|++.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3578999999755544447889999999999999999753 4789999998764
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.06 E-value=7.9e-11 Score=86.41 Aligned_cols=50 Identities=26% Similarity=0.653 Sum_probs=41.6
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
....||||++.+ . .+++.+||||.||..|+.+|++. +.+||+||+.+...
T Consensus 4 ~~~~C~IC~~~~-~--~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDP-S--NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCC-C--SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCccc-c--CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 457899999963 3 24688999999999999999985 48999999998743
No 18
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.03 E-value=1.8e-10 Score=93.95 Aligned_cols=34 Identities=21% Similarity=0.457 Sum_probs=30.2
Q ss_pred eeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 222 DVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 222 ~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
.++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 67 ~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred eEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence 4678899999999999999985 689999999864
No 19
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.02 E-value=3.8e-10 Score=85.02 Aligned_cols=50 Identities=16% Similarity=0.472 Sum_probs=41.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++. +. ++++++|||+|+..|+.+|++.++.+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~-~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLEL-MK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCC-CS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCcccc-cc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 346789999995 44 356779999999999999998657899999999863
No 20
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.02 E-value=3.8e-11 Score=92.75 Aligned_cols=59 Identities=29% Similarity=0.632 Sum_probs=44.8
Q ss_pred CCCCCcccccccccCCceeEEcC--CCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHh
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLP--CGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY 265 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~Lp--CGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~l 265 (318)
.+..||||+|.+.. .++.++| |||.|+..|+..++....+.||+||+.+......|+.+
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~ 70 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPL 70 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccC
Confidence 45789999996422 2344555 99999999999998656789999999998765545433
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.9e-10 Score=85.61 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=40.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....||||++.+ . ..+.+||||.||..|+.+|+.. ..+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~-~---~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTC-V---HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBC-S---SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCccc-C---CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 3457899999963 3 3567899999999999999975 5899999998864
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=2.5e-10 Score=86.91 Aligned_cols=48 Identities=21% Similarity=0.509 Sum_probs=40.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
.....||||++.+ . .+++++|||+||..|+.+|++. ..+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF-Q---NPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC-C---SEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh-c---CeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc
Confidence 3456899999964 3 2457999999999999999975 589999999986
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.8e-10 Score=83.64 Aligned_cols=50 Identities=26% Similarity=0.775 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d 257 (318)
.....||||++. +. .+++++|||.||..|+.+|++. ...+||+||+.+..
T Consensus 18 ~~~~~C~IC~~~-~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSB-CS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcc-cC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 446789999995 43 3567799999999999999962 45789999998853
No 24
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=3.3e-11 Score=89.07 Aligned_cols=50 Identities=22% Similarity=0.725 Sum_probs=41.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchh
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 259 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~ 259 (318)
.....||||++. +.. +++||||.||..|+.+|+. .+.+||+||+.+....
T Consensus 13 ~~~~~C~IC~~~-~~~----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDG-RAD----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCS-CCS----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcC-ccC----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence 346789999995 432 7899999999999999998 4689999999887543
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=2.6e-10 Score=85.07 Aligned_cols=49 Identities=27% Similarity=0.535 Sum_probs=39.7
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.+..||||++.+.+ ++.+++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999996433 4444599999999999999975 5899999998864
No 26
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.2e-10 Score=83.10 Aligned_cols=49 Identities=18% Similarity=0.477 Sum_probs=39.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.+..||||++. +. ..+.++|||+||..|+.+|++..+.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLV-LC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCE-ES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChH-hc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 35689999986 43 234589999999999999996556789999998864
No 27
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.92 E-value=5.7e-10 Score=90.53 Aligned_cols=52 Identities=25% Similarity=0.669 Sum_probs=42.6
Q ss_pred CCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.+..||||++.+.+. .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 457899999975432 344588999999999999999985 5799999999874
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.92 E-value=3.7e-10 Score=84.98 Aligned_cols=51 Identities=22% Similarity=0.636 Sum_probs=40.2
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcC-CCCCCCCCcccCchh
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-QYACPICSKSVCDMS 259 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d~~ 259 (318)
.+..||||++. +. .+++++ |||+||..||.+|++.. ..+||+||+.+...+
T Consensus 14 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~ 66 (74)
T 2yur_A 14 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD 66 (74)
T ss_dssp GGGSCSSSCCC-CT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred CCCCCcCCChH-Hh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence 35689999995 44 356688 99999999999999743 368999999876443
No 29
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.90 E-value=6.4e-10 Score=88.47 Aligned_cols=49 Identities=16% Similarity=0.448 Sum_probs=40.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. +++..++|||.||..||.+|+.....+||+||.++..
T Consensus 22 ~~~C~IC~~~-~~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 22 VFRCFICMEK-LR--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HTBCTTTCSB-CS--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCccCCcc-cc--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 4679999996 43 2444499999999999999998655799999999863
No 30
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.90 E-value=6.6e-10 Score=93.08 Aligned_cols=47 Identities=30% Similarity=0.824 Sum_probs=39.6
Q ss_pred CCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 207 HDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 207 ~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
..||||++.+ . .++++||||+||..|+..|+.. +.+||+||+++...
T Consensus 54 ~~C~iC~~~~-~---~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 54 LQCIICSEYF-I---EAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSK 100 (138)
T ss_dssp SBCTTTCSBC-S---SEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCE
T ss_pred CCCcccCccc-C---CceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCC
Confidence 4699999964 3 3568899999999999999974 58899999999743
No 31
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.88 E-value=1.1e-09 Score=89.64 Aligned_cols=48 Identities=25% Similarity=0.598 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. .++++||||+||..|+..|+.....+||+||+.+..
T Consensus 52 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-VF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-Hc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 4579999995 44 356789999999999999998666799999999964
No 32
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=78.92 Aligned_cols=44 Identities=25% Similarity=0.850 Sum_probs=35.6
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCC
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 251 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC 251 (318)
..+..||||++. +. ++++++|||+||..|+.+|++. ...+||+|
T Consensus 18 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDI-LQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSB-CS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCch-hC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 346789999995 43 3567799999999999999974 45789998
No 33
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.8e-09 Score=83.84 Aligned_cols=53 Identities=19% Similarity=0.518 Sum_probs=41.5
Q ss_pred CCCCCCCcccccccccCCceeEEcCCC-----CccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021022 203 GAMHHDCPVCCEYLFETRQDVIVLPCG-----HTIHKNCLKEMREHH-QYACPICSKSVCD 257 (318)
Q Consensus 203 ~~~~~~CpIClE~lf~s~~~v~~LpCG-----H~fH~~Cl~~wl~~~-~~~CPiCrks~~d 257 (318)
.+....|+||++. ++...+ +++||+ |.||..||++||... ..+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~-~~~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCE-GDDESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCC-CCSSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCcc-ccCCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 3456789999986 443444 479996 999999999999763 3689999998863
No 34
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.83 E-value=2.5e-09 Score=80.65 Aligned_cols=49 Identities=22% Similarity=0.619 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-----CCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-----QYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-----~~~CPiCrks~~d 257 (318)
....||||++. +. ..++++|||+||..|+..|+... ...||+||..+..
T Consensus 18 ~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLEL-LK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSC-CS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChh-hC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 35789999996 43 24578999999999999998752 5789999998863
No 35
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.82 E-value=6.1e-10 Score=83.56 Aligned_cols=49 Identities=27% Similarity=0.756 Sum_probs=39.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC------CCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH------QYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~------~~~CPiCrks~~d 257 (318)
.+..||||++. +. .++++||||+||..|+.+|+... ..+||+||..+..
T Consensus 11 ~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLEL-LT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEE-CS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcc-cC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 35789999996 44 24568999999999999999752 5789999998864
No 36
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2e-09 Score=76.13 Aligned_cols=43 Identities=35% Similarity=1.061 Sum_probs=34.6
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc--CCCCCCCC
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH--HQYACPIC 251 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~--~~~~CPiC 251 (318)
....||||++.+ . ..++++|||+||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYL-K---EPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBC-S---SCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCccc-C---ccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 457899999964 3 2356899999999999999653 56789998
No 37
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.82 E-value=5.1e-10 Score=93.07 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=0.5
Q ss_pred CCCCcccccccccC--------------CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFET--------------RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s--------------~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
+..|+||++.+.+. ...++.++|||.||..||.+||+. +.+||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence 46889998875321 123455799999999999999985 689999999864
No 38
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.81 E-value=2.5e-09 Score=84.25 Aligned_cols=48 Identities=27% Similarity=0.751 Sum_probs=39.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...||||++. +.. ++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus 22 ~~~C~IC~~~-~~~--p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-FNI--AMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-CSS--EEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCG
T ss_pred CCCcccCChh-hCC--cCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCCh
Confidence 4689999995 432 4444599999999999999984 5899999999873
No 39
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.80 E-value=2.4e-09 Score=82.98 Aligned_cols=48 Identities=23% Similarity=0.690 Sum_probs=39.2
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhc-CCCCCCCCCcccC
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREH-HQYACPICSKSVC 256 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~-~~~~CPiCrks~~ 256 (318)
.+..||||++. +. +++++| |||+|+..||.+|+.. ....||+||+.+.
T Consensus 12 ~~~~C~IC~~~-~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDI-MT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEE-CS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChh-hc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45789999985 44 356789 9999999999999864 3478999999973
No 40
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.80 E-value=3e-09 Score=85.19 Aligned_cols=48 Identities=31% Similarity=0.714 Sum_probs=39.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. +++.+++|||+||..|+..|+.. +.+||+||..+..
T Consensus 15 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGY-FI--DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChH-Hh--CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 5689999995 43 24555599999999999999985 5899999999874
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=2.8e-09 Score=80.34 Aligned_cols=50 Identities=28% Similarity=0.727 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-----CCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-----HQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-----~~~~CPiCrks~~d 257 (318)
.....||||++. +. ..+.++|||+||..|+..|+.. ....||+||..+..
T Consensus 17 ~~~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLEL-LT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSC-CS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcc-cC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 346789999995 43 2456899999999999999875 25789999998863
No 42
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.79 E-value=3.3e-09 Score=90.90 Aligned_cols=49 Identities=20% Similarity=0.605 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. +++.+++|||+||..|+..|+......||+||..+..
T Consensus 54 ~~~C~IC~~~-~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 54 ELMCPICLDM-LK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHBCTTTSSB-CS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCcccChH-hh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3489999996 44 2555569999999999999998657889999999853
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.77 E-value=1.5e-09 Score=87.77 Aligned_cols=48 Identities=33% Similarity=0.854 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++.+ . .++.|+|||+||..|+..|+.....+||+||+.+..
T Consensus 15 ~~~C~iC~~~~-~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEIL-V---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBC-S---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCccc-C---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 45799999864 3 356789999999999999997657899999999863
No 44
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.77 E-value=2.8e-09 Score=86.24 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. +++.++|||+||..|+.+|+.....+||+||..+..
T Consensus 23 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHI-LA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcH-hc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 4679999985 43 345689999999999999998656789999999874
No 45
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.76 E-value=2.3e-09 Score=91.69 Aligned_cols=48 Identities=23% Similarity=0.607 Sum_probs=40.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...||||++. +. .++++||||+||..|+..|+.....+||+||..+..
T Consensus 78 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-VY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-CS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-hc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 4679999995 43 356689999999999999998666789999999874
No 46
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.71 E-value=6e-09 Score=84.42 Aligned_cols=53 Identities=25% Similarity=0.664 Sum_probs=42.7
Q ss_pred CCCCCCcccccccccC---CceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFET---RQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s---~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....||||++.+... ...++.++|||.||..|+.+|++. +.+||+||.++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4467899999965431 234578899999999999999985 5799999999874
No 47
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.69 E-value=7.2e-09 Score=84.40 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..||||++. +. ..+.++|||+||..|+.+|++....+||+||+.+..
T Consensus 18 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCcCChh-hc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5689999985 43 246789999999999999998655699999999875
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.69 E-value=7.3e-09 Score=82.53 Aligned_cols=47 Identities=23% Similarity=0.754 Sum_probs=38.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC--CCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH--QYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~--~~~CPiCrks~~ 256 (318)
...||||++. +. .++.++|||+||..|+..|+... ..+||+||..+.
T Consensus 21 ~~~C~IC~~~-~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLEL-IK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCC-CS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChh-hc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999995 43 24568999999999999999743 258999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.55 E-value=3.1e-08 Score=73.11 Aligned_cols=50 Identities=18% Similarity=0.485 Sum_probs=39.6
Q ss_pred CCCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 203 GAMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 203 ~~~~~~CpIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...+..|+||++.. .+++++ ||||. |+..|+..|++. +..||+||..+..
T Consensus 5 ~~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 57 (64)
T 2vje_A 5 LNAIEPCVICQGRP----KNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQM 57 (64)
T ss_dssp CGGGSCCTTTSSSC----SCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCCE
T ss_pred CCCcCCCCcCCCCC----CCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchhc
Confidence 34567899999852 234555 99999 899999999874 5789999998864
No 50
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=7.3e-08 Score=87.02 Aligned_cols=52 Identities=12% Similarity=0.128 Sum_probs=42.7
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 202 EGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 202 e~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+......||||++. +. +++++||||+|++.||..|+.....+||+||.++..
T Consensus 204 ~~~~~~~c~i~~~~-~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 204 DIPDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCCSTTBCTTTCSB-CS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCCcccCCcCcCCH-hc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 34557789999994 54 467899999999999999998655669999999863
No 51
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.50 E-value=6.3e-08 Score=75.21 Aligned_cols=49 Identities=12% Similarity=0.202 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++. +. ++++++|||+|.+.||.+|+.. +.+||+|+..+..
T Consensus 12 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTL-MT---DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred chheECcccCch-hc---CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCCh
Confidence 346789999994 54 4678899999999999999984 6899999998863
No 52
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.50 E-value=2.1e-08 Score=71.85 Aligned_cols=45 Identities=29% Similarity=0.566 Sum_probs=36.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
.....|+||++. +. .+++|||||+|+..|+.+| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~-~~---~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAE-AK---CPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSS-CB---CCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCc-cC---CeEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 346789999985 44 3468999999999999884 468999999875
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.47 E-value=2.7e-08 Score=84.31 Aligned_cols=47 Identities=19% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCccc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSV 255 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~ 255 (318)
.+..||||++. +. +.+.++|||+|+..||.+|++....+||+||+.+
T Consensus 30 ~~~~C~IC~~~-~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 30 AKYLCSACRNV-LR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCcCCCCCChh-hc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 35689999995 43 2466899999999999999986656899999975
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.47 E-value=5.2e-08 Score=71.64 Aligned_cols=49 Identities=22% Similarity=0.570 Sum_probs=38.6
Q ss_pred CCCCCCcccccccccCCceeEEc--CCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVL--PCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~L--pCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....|+||++.. .+.+++ ||||. |+..|+..|.+. +.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~----~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~ 56 (63)
T 2vje_B 5 NLLKPCSLCEKRP----RDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQL 56 (63)
T ss_dssp GGGSBCTTTSSSB----SCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCE
T ss_pred CcCCCCcccCCcC----CCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhc
Confidence 3467899999852 223444 99998 999999999874 4789999998864
No 55
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.46 E-value=1.1e-07 Score=76.33 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++. +. +++++||||+|.+.||..|+. .+.+||+|+.++..
T Consensus 27 p~~~~CpI~~~~-m~---dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTL-MT---DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSB-CS---SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCc-cc---CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCCh
Confidence 346789999994 54 467889999999999999998 46899999999863
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.46 E-value=3.2e-08 Score=80.46 Aligned_cols=44 Identities=23% Similarity=0.663 Sum_probs=37.1
Q ss_pred CCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
+..||||++. +. .++++ +|||+||..|+..|+. ..||+||..+.
T Consensus 22 ~~~C~IC~~~-~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNI-LR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSC-CS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChH-hh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 5789999985 44 24556 9999999999999986 78999999985
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.46 E-value=5.8e-08 Score=73.25 Aligned_cols=43 Identities=26% Similarity=0.739 Sum_probs=36.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..|+||++.+ . .++++||||. |+..|+..| .+||+||+.+..
T Consensus 24 ~~~C~iC~~~~-~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRN-I---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSB-C---CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred CCCCCCCCCCC-C---CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence 46799999853 2 4678899999 999999998 579999998864
No 58
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=1.2e-07 Score=72.99 Aligned_cols=49 Identities=18% Similarity=0.453 Sum_probs=38.3
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d 257 (318)
..+|+||.+. +... ..-..|+|.||..||.+||+.. +.+||+||..+..
T Consensus 15 i~~C~IC~~~-i~~g--~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 15 VKICNICHSL-LIQG--QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SCBCSSSCCB-CSSS--EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCcCcchhhH-cccC--CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 4789999985 4433 3334899999999999999753 2789999998864
No 59
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.43 E-value=1.5e-07 Score=75.30 Aligned_cols=49 Identities=14% Similarity=0.178 Sum_probs=41.3
Q ss_pred CCCCCCcccccccccCCceeEEcCCC-CccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++. +. ++++++|| |+|.+.||.+|+.. +.+||+||..+..
T Consensus 20 p~~~~CpI~~~~-m~---dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTL-MC---DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSB-CS---SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCT
T ss_pred cHhcCCcCcccc-cc---CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCCh
Confidence 346789999994 54 46789999 99999999999985 6899999999863
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.41 E-value=1.1e-07 Score=81.75 Aligned_cols=48 Identities=23% Similarity=0.674 Sum_probs=40.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...||||++. +. +++.++|||+|+..|+.+|+.....+||+||..+..
T Consensus 18 ~~~C~IC~~~-~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 18 KYECPICLMA-LR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCChh-hc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 5689999995 43 245689999999999999997655699999999875
No 61
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.32 E-value=3.2e-07 Score=90.07 Aligned_cols=49 Identities=31% Similarity=0.736 Sum_probs=41.0
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
....|+||++.+ ..++.+||||.||..|+..|+.....+||+||..+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999853 3467899999999999999997456889999998864
No 62
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=4.9e-07 Score=71.20 Aligned_cols=46 Identities=28% Similarity=0.608 Sum_probs=36.8
Q ss_pred CCCCCcccccccccCCceeEEcC-CCCccchHHHHHHHhcC-----CCCCCC--CCcc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLP-CGHTIHKNCLKEMREHH-----QYACPI--CSKS 254 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~Lp-CGH~fH~~Cl~~wl~~~-----~~~CPi--Crks 254 (318)
.+..||||++. |. ++++++ |||+|.+.||.+|+... ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~-~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEE-MK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSB-CS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCch-hc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 45789999984 55 356675 99999999999999742 468999 9866
No 63
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.31 E-value=6.3e-07 Score=70.07 Aligned_cols=49 Identities=24% Similarity=0.524 Sum_probs=37.2
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-------CCCCCCC--CCcc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-------HQYACPI--CSKS 254 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-------~~~~CPi--Crks 254 (318)
....|+||++. +.....+.+.+|||.|+..|+.+|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~-~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGE-YPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCC-CBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcc-cccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35689999996 443333344589999999999999863 1357999 9998
No 64
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.25 E-value=4.2e-07 Score=68.46 Aligned_cols=43 Identities=26% Similarity=0.738 Sum_probs=34.8
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...|+||++. +. .++++||||. |+..|+..+ ..||+||+.+..
T Consensus 25 ~~~C~IC~~~-~~---~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDR-NI---AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSS-CC---CBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCC
T ss_pred CCCCCcCCCC-CC---CEEEecCCCHHHHHHHhhCC-----CCCccCCceecC
Confidence 3579999985 33 4678999999 999999643 579999998865
No 65
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=7.5e-07 Score=66.58 Aligned_cols=46 Identities=33% Similarity=0.762 Sum_probs=37.6
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
.....|+||++. ...+++|||||. |+..|+... ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~----~~~~v~~pCgH~~~C~~C~~~~-----~~CP~CR~~i~~~ 59 (68)
T 2ea5_A 13 ENSKDCVVCQNG----TVNWVLLPCRHTCLCDGCVKYF-----QQCPMCRQFVQES 59 (68)
T ss_dssp CCSSCCSSSSSS----CCCCEETTTTBCCSCTTHHHHC-----SSCTTTCCCCCCE
T ss_pred CCCCCCCCcCcC----CCCEEEECCCChhhhHHHHhcC-----CCCCCCCcchhce
Confidence 446789999984 235789999999 999999842 5799999998754
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.20 E-value=1.4e-06 Score=77.13 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=40.8
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+..||||++. +. +++++||||+|.+.||..|+.....+||+|+.++..
T Consensus 104 p~~f~CPI~~el-m~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFEL-MR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSB-CS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCcccc-CC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 346789999994 54 467789999999999999997543479999998863
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.11 E-value=8.4e-07 Score=68.07 Aligned_cols=44 Identities=34% Similarity=0.836 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
+..|+||++. + ..++++||||. |+..|+..|. .||+||..+...
T Consensus 18 ~~~C~IC~~~-~---~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~ 62 (79)
T 2yho_A 18 AMLCMVCCEE-E---INSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV 62 (79)
T ss_dssp HTBCTTTSSS-B---CCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred CCEeEEeCcc-c---CcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence 3579999985 2 35788999999 9999999872 799999998753
No 68
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.08 E-value=1.6e-06 Score=63.69 Aligned_cols=51 Identities=25% Similarity=0.513 Sum_probs=38.8
Q ss_pred CCCCCCCCcccccccccCCceeEEcCCC--C---ccchHHHHHHHhc-CCCCCCCCCcccC
Q 021022 202 EGAMHHDCPVCCEYLFETRQDVIVLPCG--H---TIHKNCLKEMREH-HQYACPICSKSVC 256 (318)
Q Consensus 202 e~~~~~~CpIClE~lf~s~~~v~~LpCG--H---~fH~~Cl~~wl~~-~~~~CPiCrks~~ 256 (318)
|......|.||++. . ..+ .++||. + .||..||.+|+.. ++.+||+|+..+.
T Consensus 2 e~~~~~~CrIC~~~-~--~~~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 2 EDEDVPVCWICNEE-L--GNE-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp TTCSCCEETTTTEE-C--SCC-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCEeEEeecC-C--CCc-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 44567789999985 2 223 368965 4 8999999999974 4678999998764
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.87 E-value=5.5e-06 Score=77.67 Aligned_cols=50 Identities=24% Similarity=0.664 Sum_probs=40.4
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc-CCCCCCC--CCcccC
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH-HQYACPI--CSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~-~~~~CPi--Crks~~ 256 (318)
..+..||||++. |. +||....|||+|.+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~-f~--DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKP-YE--APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSB-CS--SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCc-cc--CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 346789999996 43 36666799999999999999874 3467999 999876
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.82 E-value=3.9e-06 Score=81.64 Aligned_cols=53 Identities=21% Similarity=0.439 Sum_probs=39.1
Q ss_pred CCCCCCcccccccccCCcee----EEcCCCCccchHHHHHHHhcCC----------CCCCCCCcccC
Q 021022 204 AMHHDCPVCCEYLFETRQDV----IVLPCGHTIHKNCLKEMREHHQ----------YACPICSKSVC 256 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v----~~LpCGH~fH~~Cl~~wl~~~~----------~~CPiCrks~~ 256 (318)
....+|+||++.+.+++.-+ .-++|||.||..|+.+|+.+.. ..||.||.++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 45679999999755423211 1358999999999999996411 36999999875
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.69 E-value=9e-06 Score=78.47 Aligned_cols=43 Identities=30% Similarity=0.834 Sum_probs=36.4
Q ss_pred CCCCcccccccccCCceeEEcCCCCc-cchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT-IHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~-fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+..|+||++. +. .++.|||||. |+..|+..| ..||+||..+..
T Consensus 295 ~~~C~IC~~~-~~---~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDK-EV---SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSS-BC---CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCc-CC---ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 4689999995 33 4778899999 999999988 569999998864
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.47 E-value=8.1e-05 Score=60.46 Aligned_cols=49 Identities=22% Similarity=0.419 Sum_probs=39.5
Q ss_pred CCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchh
Q 021022 208 DCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMS 259 (318)
Q Consensus 208 ~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~ 259 (318)
-|++|.-++. ...+.+||+|+|+.+|+..|.+.+..+||+|+.++.+.+
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 4778875432 356789999999999999998767789999999998643
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.41 E-value=8.6e-05 Score=54.41 Aligned_cols=48 Identities=13% Similarity=0.153 Sum_probs=37.5
Q ss_pred CCCCCcccccccccCCceeEEc-CCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
+...|||+++. +. +.+++ ++||+|-+.+|.+|++. +.+||+.+..+..
T Consensus 2 ~~~~CpIs~~~-m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~ 50 (61)
T 2bay_A 2 SHMLCAISGKV-PR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSI 50 (61)
T ss_dssp --CCCTTTCSC-CS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCG
T ss_pred CeEEecCCCCC-CC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCCh
Confidence 35689999995 44 24555 99999999999999975 4679999998863
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.11 E-value=0.0027 Score=58.17 Aligned_cols=49 Identities=20% Similarity=0.510 Sum_probs=36.2
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcC-CCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHH-QYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~-~~~CPiCrks~~d 257 (318)
-..|.||.+-+.. ...=..|+|.||..|+..|++.. +.+||.|+..|..
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4578999885432 22223499999999999998753 4689999998763
No 75
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.90 E-value=0.084 Score=41.19 Aligned_cols=33 Identities=24% Similarity=0.724 Sum_probs=17.8
Q ss_pred ecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021022 123 ICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF 155 (318)
Q Consensus 123 ~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~ 155 (318)
.|..|+..-+....||.||.++ ..|||..|+=.
T Consensus 20 ~C~~C~~~~~~~afCPeCgq~Le~lkACGA~~yFC~~C~~L 60 (81)
T 2jrp_A 20 HCETCAKDFSLQALCPDCRQPLQVLKACGAVDYFCQNGHGL 60 (81)
T ss_dssp ECTTTCCEEEEEEECSSSCSCCCEEEETTEEEECCTTTTCC
T ss_pred ECccccccCCCcccCcchhhHHHHHHhcCCcCeeeccCCCE
Confidence 3555554433333455544444 37888888644
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.92 E-value=0.12 Score=39.99 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCcccccccccCCceeEE-cCCCCccchHHHHHH
Q 021022 206 HHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEM 240 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~w 240 (318)
+..|+||++..+. .++.. +.|+|+|+..|+..+
T Consensus 3 e~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHH
Confidence 4679999974333 23333 999999999999984
No 77
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=88.27 E-value=0.22 Score=40.06 Aligned_cols=45 Identities=27% Similarity=0.585 Sum_probs=35.8
Q ss_pred CCCCcccccccccCCceeEEcCCC-CccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCG-HTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCG-H~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
..+|-.|.- ... .++.|. |.++..|++.+|+. +.+||||.+++..
T Consensus 28 ~~nCKsCWf---~~k---~LV~C~dHYLCl~CLtlmL~~-SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWF---ENK---GLVECNNHYLCLNCLTLLLSV-SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCS---CCS---SEEECSSCEEEHHHHHHTCSS-SSEETTTTEECCC
T ss_pred cccChhhcc---ccC---CeeeecchhhHHHHHHHHHhh-ccCCcccCCcCCc
Confidence 468999983 221 266785 99999999999985 5899999999975
No 78
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=87.99 E-value=0.22 Score=40.23 Aligned_cols=33 Identities=24% Similarity=0.692 Sum_probs=17.8
Q ss_pred ecCCCCccccccccCcCCCCcc--------ceEecCccccc
Q 021022 123 ICSLCGTEQKVQQVCVNCGVCM--------GEYFCESCKLF 155 (318)
Q Consensus 123 ~C~~C~~eQ~v~~~C~~Cg~~f--------~~YfC~~Ckl~ 155 (318)
.|..|+..-.....||.|+.++ +.|||..|+=.
T Consensus 50 hC~~C~~~f~~~a~CPdC~q~LevLkACGAvdYFC~~chgL 90 (101)
T 2jne_A 50 RCRSCGEFIEMKALCPDCHQPLQVLKACGAVDYFCQHGHGL 90 (101)
T ss_dssp EETTTCCEEEEEEECTTTCSBCEEEEETTEEEEEETTTTEE
T ss_pred ECccccchhhccccCcchhhHHHHHHHhcCcchhhccCCce
Confidence 3555544444444455555544 57777777633
No 79
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.89 E-value=0.71 Score=39.30 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=34.6
Q ss_pred cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh----------cCCCCCCCCCcc
Q 021022 201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----------HHQYACPICSKS 254 (318)
Q Consensus 201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----------~~~~~CPiCrks 254 (318)
.+...+..|.||.+- ++-+.-=.|.-+||..|+..-+. .+.-.||+|+..
T Consensus 58 d~Dg~~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 356678899999972 32111126889999999996542 245679999954
No 80
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=87.73 E-value=0.19 Score=42.28 Aligned_cols=37 Identities=22% Similarity=0.621 Sum_probs=29.6
Q ss_pred cceEEcCCCCCCccc-------------cceee------eccCCCCCCccccccCC
Q 021022 282 KVWILCNDCGKTSNV-------------QFHVL------AQKCPNCKSYNTRLTRG 318 (318)
Q Consensus 282 ~v~IlCnDC~~~s~v-------------~~H~l------g~KC~~C~SyNT~~~~~ 318 (318)
.+...|.+|+..... .+|++ ..+||.|||++..+++|
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~i~~G 123 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFEVVKG 123 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEEEEES
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccEEecC
Confidence 467899999986532 56776 68999999999987765
No 81
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.03 E-value=0.24 Score=39.51 Aligned_cols=83 Identities=22% Similarity=0.540 Sum_probs=43.1
Q ss_pred CCCceeecCC-cceeeccCccceee-----cccc----ccccccCCCCCCCCcccccccccCCceeEEcCCCCccchHHH
Q 021022 168 GCGICRIGGC-DNFFHCNKCRCCYS-----MLLK----NSHPCVEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 237 (318)
Q Consensus 168 ~CgiCR~G~~-~~ffHC~~C~~C~s-----~~l~----~~H~Cie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl 237 (318)
.|.||..+|. ++...|+.|+.-|- ..+. ..=.|.+= ..|.||.+. .+...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQS-GEDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCC-SCCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCcc-CCCCCeeECCCCCcHHhHHhc
Confidence 4555655552 45666777665442 2221 11112210 146777753 111111112268899999999
Q ss_pred HHHHhc---CCCCCCCCCcc
Q 021022 238 KEMREH---HQYACPICSKS 254 (318)
Q Consensus 238 ~~wl~~---~~~~CPiCrks 254 (318)
.+-+.. +...||.|+.-
T Consensus 85 ~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHCC
T ss_pred CCccccCCCCCcCCcCCcCc
Confidence 875442 34668888653
No 82
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=82.95 E-value=0.53 Score=38.19 Aligned_cols=36 Identities=33% Similarity=0.618 Sum_probs=28.4
Q ss_pred CcceEEcCCCCCCccccceeeec-cCCCCCCccccccCC
Q 021022 281 KKVWILCNDCGKTSNVQFHVLAQ-KCPNCKSYNTRLTRG 318 (318)
Q Consensus 281 ~~v~IlCnDC~~~s~v~~H~lg~-KC~~C~SyNT~~~~~ 318 (318)
..+...|.+|+......- ... +||.|+|.++++++|
T Consensus 70 ~p~~~~C~~CG~~~e~~~--~~~~~CP~Cgs~~~~i~~G 106 (119)
T 2kdx_A 70 EKVELECKDCSHVFKPNA--LDYGVCEKCHSKNVIITQG 106 (119)
T ss_dssp ECCEEECSSSSCEECSCC--STTCCCSSSSSCCCEEEES
T ss_pred ccceEEcCCCCCEEeCCC--CCCCcCccccCCCcEEecC
Confidence 346789999998876542 246 899999999998876
No 83
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=80.27 E-value=0.33 Score=39.01 Aligned_cols=74 Identities=18% Similarity=0.459 Sum_probs=41.4
Q ss_pred CCcceeeccCccceeecc-c-----------cccccccCCCCCCCCcccccccccCCceeEE-cCCCCccchHHHHHHHh
Q 021022 176 GCDNFFHCNKCRCCYSML-L-----------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMRE 242 (318)
Q Consensus 176 ~~~~ffHC~~C~~C~s~~-l-----------~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~ 242 (318)
.+++...|..|+.-|-.+ | ...=.|.+= ..|.||.+. ......++. -.|...||..|+.+-|.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~-~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQ-GKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCC-CCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCc-CCCccceEEcCCCCCeeecccCCCCCC
Confidence 356777777777655322 1 122233321 157788752 111111111 25889999999987554
Q ss_pred c---CCCCCCCCCc
Q 021022 243 H---HQYACPICSK 253 (318)
Q Consensus 243 ~---~~~~CPiCrk 253 (318)
. +...||.|+.
T Consensus 98 ~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 98 RMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCCCTTTSC
T ss_pred CCCCCCeECCCCCC
Confidence 2 3467999975
No 84
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=79.86 E-value=3.4 Score=32.65 Aligned_cols=70 Identities=20% Similarity=0.600 Sum_probs=36.3
Q ss_pred ceeecCCCCccccc--cccCcCCCCccceEecCcccccc-CCCCCCeeecCCC---CceeecC-CcceeeccCccceeec
Q 021022 120 NQVICSLCGTEQKV--QQVCVNCGVCMGEYFCESCKLFD-DDTSKKQYHCDGC---GICRIGG-CDNFFHCNKCRCCYSM 192 (318)
Q Consensus 120 ~~v~C~~C~~eQ~v--~~~C~~Cg~~f~~YfC~~Ckl~d-dd~~k~~yHC~~C---giCR~G~-~~~ffHC~~C~~C~s~ 192 (318)
++.+|..|+..... ...|..|+..|= ..|--.. ....+..+.|+.| .+|+.++ .+....|+.|..-|-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H----~~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYH----GMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEEC----TTTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcC----hHHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 45567777655432 135666655431 1222111 1112345666654 4555554 2468888888876654
Q ss_pred c
Q 021022 193 L 193 (318)
Q Consensus 193 ~ 193 (318)
.
T Consensus 82 ~ 82 (111)
T 2ysm_A 82 F 82 (111)
T ss_dssp G
T ss_pred H
Confidence 3
No 85
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.54 E-value=3.7 Score=32.62 Aligned_cols=56 Identities=18% Similarity=0.419 Sum_probs=42.5
Q ss_pred cCCCCCCCCcccccccccCCceeEEc---CCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 201 VEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 201 ie~~~~~~CpIClE~lf~s~~~v~~L---pCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
+.......|.||.+++-.....-... -|+-.+++.|+.--.+..+..||.|+..+.
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 44445679999999865544333333 578899999999988888889999998775
No 86
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=77.36 E-value=0.31 Score=39.36 Aligned_cols=67 Identities=22% Similarity=0.452 Sum_probs=46.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcce
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVW 284 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~ 284 (318)
|+..||+|..+|-..+ |+.++..|-..+.. ...||-|..++..+. +-..++
T Consensus 31 M~~~CP~Cq~eL~~~g--------~~~hC~~C~~~f~~--~a~CPdC~q~LevLk-------------------ACGAvd 81 (101)
T 2jne_A 31 MELHCPQCQHVLDQDN--------GHARCRSCGEFIEM--KALCPDCHQPLQVLK-------------------ACGAVD 81 (101)
T ss_dssp CCCBCSSSCSBEEEET--------TEEEETTTCCEEEE--EEECTTTCSBCEEEE-------------------ETTEEE
T ss_pred ccccCccCCCcceecC--------CEEECccccchhhc--cccCcchhhHHHHHH-------------------HhcCcc
Confidence 6789999997653321 44457777776654 367999999887543 233578
Q ss_pred EEcCCCCC---Ccccccee
Q 021022 285 ILCNDCGK---TSNVQFHV 300 (318)
Q Consensus 285 IlCnDC~~---~s~v~~H~ 300 (318)
.+||.|.+ ++.|.|.+
T Consensus 82 YFC~~chgLiSKkRV~F~~ 100 (101)
T 2jne_A 82 YFCQHGHGLISKKRVEFVL 100 (101)
T ss_dssp EEETTTTEEECTTTSEEEE
T ss_pred hhhccCCceeecceEEEEe
Confidence 99999984 66676653
No 87
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=76.98 E-value=0.23 Score=40.18 Aligned_cols=83 Identities=20% Similarity=0.540 Sum_probs=46.8
Q ss_pred CCCCceeecC--------CcceeeccCccceee-----ccc-------cccccccCCCCCCCCcccccccccCCceeEEc
Q 021022 167 DGCGICRIGG--------CDNFFHCNKCRCCYS-----MLL-------KNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL 226 (318)
Q Consensus 167 ~~CgiCR~G~--------~~~ffHC~~C~~C~s-----~~l-------~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~L 226 (318)
+.|+||..|+ +++...|+.|+.-|- ..+ ...=.|.+= ..|.||... .. . ..+++
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~-~~-~-~~ll~ 75 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTS-EN-D-DQLLF 75 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCC-TT-T-TTEEE
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCccccc-CC-C-CceEE
Confidence 3466665543 457888888876542 211 112223321 257888763 11 1 12232
Q ss_pred --CCCCccchHHHHHHHhc---CCCCCCCCCccc
Q 021022 227 --PCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (318)
Q Consensus 227 --pCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 255 (318)
.|...||..|+.+=|.. +...||.|...+
T Consensus 76 Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~ 109 (114)
T 2kwj_A 76 CDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELL 109 (114)
T ss_dssp CSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHH
T ss_pred cCCCCccccccccCCCccCCCCCCeECccccchh
Confidence 68899999999964432 345688886543
No 88
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=70.03 E-value=3.2 Score=30.52 Aligned_cols=45 Identities=20% Similarity=0.395 Sum_probs=30.6
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCcc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 254 (318)
...|.||.+. .+-+.=-.|...||..|+...|.. +...||.|+..
T Consensus 12 ~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 4569999752 221111268899999999987653 34679999754
No 89
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=65.92 E-value=1 Score=35.88 Aligned_cols=29 Identities=28% Similarity=0.698 Sum_probs=20.3
Q ss_pred EcCCCCccchHHHHHHHhc-------CCCCCCCCCc
Q 021022 225 VLPCGHTIHKNCLKEMREH-------HQYACPICSK 253 (318)
Q Consensus 225 ~LpCGH~fH~~Cl~~wl~~-------~~~~CPiCrk 253 (318)
---|...+|..|+....+. ..+.||.|+.
T Consensus 78 C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 78 CCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp ETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred eeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 3579999999998764321 2367999975
No 90
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=65.05 E-value=6.5 Score=32.82 Aligned_cols=50 Identities=24% Similarity=0.475 Sum_probs=33.5
Q ss_pred cCCCCCCCCcccccccccCCceeEEcCCCCccchHHHHHHH----------hcCCCCCCCCCcc
Q 021022 201 VEGAMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----------EHHQYACPICSKS 254 (318)
Q Consensus 201 ie~~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl----------~~~~~~CPiCrks 254 (318)
.+...+..|.||.+- ++-+-==.|-.+||..|+..-+ ..+.-.|++|+-.
T Consensus 52 d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 52 DSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 455677889999962 2211111578999999999752 1245679999754
No 91
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=60.34 E-value=1.7 Score=31.15 Aligned_cols=50 Identities=26% Similarity=0.470 Sum_probs=31.2
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh----cCCCCCCCCCcc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE----HHQYACPICSKS 254 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~----~~~~~CPiCrks 254 (318)
....||||.....+...-+.--.|...||..|+.--.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 35679999874222221112226788999999875322 246889999753
No 92
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.47 E-value=5.8 Score=29.98 Aligned_cols=64 Identities=23% Similarity=0.553 Sum_probs=38.0
Q ss_pred CcceeeccCccceeeccccccccccCCCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHHhc---C-CCCCCC
Q 021022 177 CDNFFHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---H-QYACPI 250 (318)
Q Consensus 177 ~~~ffHC~~C~~C~s~~l~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~-~~~CPi 250 (318)
+.++..|..|.. ...=.|.+ ..|.||... .+.. .+++ .|.-.||..|+.+=|.. + .-.||.
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~~----c~C~vC~~~--~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~ 73 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCHS----CSCRVCGGK--HEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPS 73 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCSS----SSCSSSCCC--CCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTT
T ss_pred ccCCccChhhcC------CCCeECCC----CCCcCcCCc--CCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcC
Confidence 356666666654 12334542 378899852 1122 2222 67899999999864432 2 456888
Q ss_pred CCc
Q 021022 251 CSK 253 (318)
Q Consensus 251 Crk 253 (318)
|..
T Consensus 74 C~~ 76 (77)
T 2e6s_A 74 CKT 76 (77)
T ss_dssp TCC
T ss_pred ccC
Confidence 864
No 93
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=52.77 E-value=2.8 Score=30.94 Aligned_cols=48 Identities=23% Similarity=0.478 Sum_probs=31.5
Q ss_pred CCCCcccccccccCCceeEEc--CCCCccchHHHHHHHhc---CCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~~~~CPiCrks~~ 256 (318)
...|+||... .. . ..+++ .|.-.||..|+..-+.. ..+.||.|+..+.
T Consensus 18 ~~~C~~C~~~-~~-~-~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 18 IWICPGCNKP-DD-G-SPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EECBTTTTBC-CS-S-CCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CcCCCCCCCC-CC-C-CCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3469999863 21 1 22333 67899999999865432 4688999986543
No 94
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=49.77 E-value=5.4 Score=33.95 Aligned_cols=30 Identities=30% Similarity=0.810 Sum_probs=19.9
Q ss_pred EecCccccccCCCCCCeeecCCCCceeecC
Q 021022 147 YFCESCKLFDDDTSKKQYHCDGCGICRIGG 176 (318)
Q Consensus 147 YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~ 176 (318)
|-|+.|.+=--...++-|||+.||+|---.
T Consensus 99 yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 99 YHCESCGICRIGPKEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ecCCCCCceeccCCcCcEECCcCCeeeccc
Confidence 444444443333468999999999996543
No 95
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=49.36 E-value=10 Score=27.11 Aligned_cols=47 Identities=26% Similarity=0.583 Sum_probs=30.7
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh---cCCCCCCCCCcc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE---HHQYACPICSKS 254 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~---~~~~~CPiCrks 254 (318)
..+..|.||.+. .+-+.=-.|.-.||..|+..-+. .+...||.|.+.
T Consensus 9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 446789999862 11111125778999999997543 245679999753
No 96
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=48.84 E-value=10 Score=29.33 Aligned_cols=58 Identities=17% Similarity=0.507 Sum_probs=28.2
Q ss_pred eecCCCCcccccc---ccCcCCCCccc-eEecCccccccCCCCCCeeecCCCCceeecCCcceeeccCccceeecc
Q 021022 122 VICSLCGTEQKVQ---QVCVNCGVCMG-EYFCESCKLFDDDTSKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSML 193 (318)
Q Consensus 122 v~C~~C~~eQ~v~---~~C~~Cg~~f~-~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 193 (318)
+.|..|+.+.+.. ..|..|+..|. .-||+-|.-= .+ .|..=|.++|| |..||-=+|++
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~C~~~~~~~afCPeCgq~---Le----------~lkACGA~~yF-C~~C~~LiSkk 64 (81)
T 2jrp_A 3 ITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQP---LQ----------VLKACGAVDYF-CQNGHGLISKK 64 (81)
T ss_dssp CCCSSSCSCCEECSSEEECTTTCCEEEEEEECSSSCSC---CC----------EEEETTEEEEC-CTTTTCCCCTT
T ss_pred CCCCCCCCccccCCCceECccccccCCCcccCcchhhH---HH----------HHHhcCCcCee-eccCCCEeecc
Confidence 4566666654331 23666666552 1255555311 01 23322334555 67777666654
No 97
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=48.76 E-value=8.1 Score=27.02 Aligned_cols=12 Identities=25% Similarity=0.769 Sum_probs=7.8
Q ss_pred ccccccCcCCCC
Q 021022 131 QKVQQVCVNCGV 142 (318)
Q Consensus 131 Q~v~~~C~~Cg~ 142 (318)
+..-..||.||.
T Consensus 16 ~~~~k~CP~CG~ 27 (50)
T 3j20_Y 16 IRKNKFCPRCGP 27 (50)
T ss_dssp ECSSEECSSSCS
T ss_pred EEecccCCCCCC
Confidence 333467888877
No 98
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=48.57 E-value=11 Score=25.56 Aligned_cols=45 Identities=24% Similarity=0.651 Sum_probs=27.1
Q ss_pred CCcccccccccCCceeEE-cCCCCccchHHHHHHHhc---CCCCCCCCCcc
Q 021022 208 DCPVCCEYLFETRQDVIV-LPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (318)
Q Consensus 208 ~CpIClE~lf~s~~~v~~-LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 254 (318)
.|.||.+. .....++. -.|.-.||..|+..=+.. +...||.|+..
T Consensus 2 ~C~vC~~~--~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK--GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS--SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC--CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777752 11111111 267899999999764332 34679999753
No 99
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=42.12 E-value=32 Score=22.05 Aligned_cols=16 Identities=19% Similarity=0.295 Sum_probs=10.4
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+.....
T Consensus 4 ~~~C~~C~~~f~~~~~ 19 (57)
T 3uk3_C 4 SRECSYCGKFFRSNYY 19 (57)
T ss_dssp -CBCTTTCCBCSCHHH
T ss_pred CccCCCCcchhCChHH
Confidence 4678888877766443
No 100
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=41.43 E-value=9.9 Score=33.26 Aligned_cols=50 Identities=18% Similarity=0.547 Sum_probs=32.2
Q ss_pred CCCcccccccccCCc-eeEEc---CCCCccchHHHHHH------Hh----cCCCCCCCCCcccCc
Q 021022 207 HDCPVCCEYLFETRQ-DVIVL---PCGHTIHKNCLKEM------RE----HHQYACPICSKSVCD 257 (318)
Q Consensus 207 ~~CpIClE~lf~s~~-~v~~L---pCGH~fH~~Cl~~w------l~----~~~~~CPiCrks~~d 257 (318)
..||||... +...+ ....+ .|...||..|..-- ++ ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~-Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKC-YDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCB-CTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCc-cCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 459999874 33322 12233 57899999998531 11 026999999988764
No 101
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=38.52 E-value=22 Score=34.74 Aligned_cols=71 Identities=18% Similarity=0.451 Sum_probs=46.3
Q ss_pred eeccCccceeeccccccccccCCCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHHhc---------CCCCCC
Q 021022 181 FHCNKCRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---------HQYACP 249 (318)
Q Consensus 181 fHC~~C~~C~s~~l~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---------~~~~CP 249 (318)
|---.|..|...-+.....-.+...+..|.+|.+- ++-+.-= .|...|+..||+.++.. ..-.|=
T Consensus 68 ~~v~lC~~Ck~~y~~~~f~~D~DG~~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf 143 (386)
T 2pv0_B 68 FEGGICAPCKDKFLDALFLYDDDGYQSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCY 143 (386)
T ss_dssp BSSBCCHHHHHHHHTTTTCBCSSSSBCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCT
T ss_pred cCcchhhHHHHHHhccCcccCCCCCcccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEE
Confidence 33445555655555555666777889999999972 2212212 68899999999998732 235677
Q ss_pred CCCccc
Q 021022 250 ICSKSV 255 (318)
Q Consensus 250 iCrks~ 255 (318)
+|.-.-
T Consensus 144 ~C~p~p 149 (386)
T 2pv0_B 144 LCLPSS 149 (386)
T ss_dssp TTSSCC
T ss_pred EcCCcc
Confidence 777554
No 102
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=37.85 E-value=9 Score=27.36 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=30.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCccc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 255 (318)
..+..|.||.+. ..-+.=-.|.-.||..|+..-+.. +...||.|....
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 346678888852 111111157789999999864432 346799998654
No 103
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=37.25 E-value=8.7 Score=23.92 Aligned_cols=30 Identities=27% Similarity=0.585 Sum_probs=17.9
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHH
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCL 237 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl 237 (318)
+...||.|...++.. +.+. .=|..+|..|+
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345688887765542 2222 33778888774
No 104
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.81 E-value=21 Score=33.58 Aligned_cols=25 Identities=28% Similarity=0.607 Sum_probs=21.4
Q ss_pred CceeecCCCCcccccc-ccCcCCCCc
Q 021022 119 VNQVICSLCGTEQKVQ-QVCVNCGVC 143 (318)
Q Consensus 119 v~~v~C~~C~~eQ~v~-~~C~~Cg~~ 143 (318)
.+-..|+.|+++-.+. ..|++||..
T Consensus 206 ~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 206 LRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred cEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4579999999998874 689999987
No 105
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=36.45 E-value=22 Score=25.21 Aligned_cols=9 Identities=33% Similarity=1.077 Sum_probs=4.7
Q ss_pred cccCcCCCC
Q 021022 134 QQVCVNCGV 142 (318)
Q Consensus 134 ~~~C~~Cg~ 142 (318)
...||.||.
T Consensus 18 ~~fCPkCG~ 26 (55)
T 2k4x_A 18 HRFCPRCGP 26 (55)
T ss_dssp SCCCTTTTT
T ss_pred cccCcCCCC
Confidence 345555554
No 106
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=34.81 E-value=33 Score=33.29 Aligned_cols=48 Identities=15% Similarity=0.416 Sum_probs=34.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchHHHHHHHh-cCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~--fH~~Cl~~wl~-~~~~~CPiCrks~~ 256 (318)
...||+=+..|. .+++...|.|. |=..=+.++.. .....||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 357998887543 37889999997 65555555532 35678999999985
No 107
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=34.62 E-value=38 Score=24.49 Aligned_cols=29 Identities=17% Similarity=0.516 Sum_probs=22.4
Q ss_pred CCccCceeecCCCCccccc-cccCcCCCCc
Q 021022 115 PRHEVNQVICSLCGTEQKV-QQVCVNCGVC 143 (318)
Q Consensus 115 dR~~v~~v~C~~C~~eQ~v-~~~C~~Cg~~ 143 (318)
..+....++|+.|+...++ +..|-.||..
T Consensus 13 ~k~~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 13 QQRVFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp TTCSCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HHHHhchhhhccccCcCCcccccccCCCCC
Confidence 3334567999999999888 5789888853
No 108
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=34.46 E-value=29 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=8.5
Q ss_pred CCCCCCCcccCchh
Q 021022 246 YACPICSKSVCDMS 259 (318)
Q Consensus 246 ~~CPiCrks~~d~~ 259 (318)
|.|++|.+.+....
T Consensus 2 ~~C~~C~~~f~~~~ 15 (57)
T 1bbo_A 2 YICEECGIRXKKPS 15 (57)
T ss_dssp CBCTTTCCBCSSHH
T ss_pred CcCCCCcCcCCCHH
Confidence 45666766666543
No 109
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=34.30 E-value=10 Score=33.13 Aligned_cols=46 Identities=17% Similarity=0.413 Sum_probs=31.6
Q ss_pred CCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHHhc---CCCCCCCCCccc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 255 (318)
..+..|.||.+. ++ +++ .|.-.||..|+.+-+.. +...||.|+..-
T Consensus 5 ~~~~~C~~C~~~----g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG----GD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC----EE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC----Cc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 446779999852 21 222 57899999999876542 456799998753
No 110
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=34.24 E-value=15 Score=29.46 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=6.6
Q ss_pred ccccccCcCCCCcc
Q 021022 131 QKVQQVCVNCGVCM 144 (318)
Q Consensus 131 Q~v~~~C~~Cg~~f 144 (318)
+|+.-.|.+||..|
T Consensus 70 ~p~~~~C~~CG~~~ 83 (119)
T 2kdx_A 70 EKVELECKDCSHVF 83 (119)
T ss_dssp ECCEEECSSSSCEE
T ss_pred ccceEEcCCCCCEE
Confidence 33444455555444
No 111
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.55 E-value=36 Score=32.91 Aligned_cols=48 Identities=23% Similarity=0.480 Sum_probs=35.0
Q ss_pred CCCCcccccccccCCceeEEcCCCCc--cchHHHHHHHh-cCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHT--IHKNCLKEMRE-HHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~--fH~~Cl~~wl~-~~~~~CPiCrks~~ 256 (318)
...|||=+..|. .+++...|.|. |=..=+.++.. .....||+|++.+.
T Consensus 215 SL~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 346998887543 37889999988 66665555543 34578999999986
No 112
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=32.78 E-value=20 Score=23.30 Aligned_cols=14 Identities=36% Similarity=0.883 Sum_probs=11.4
Q ss_pred CCCCCCCcccCchh
Q 021022 246 YACPICSKSVCDMS 259 (318)
Q Consensus 246 ~~CPiCrks~~d~~ 259 (318)
+.||+|.+.+....
T Consensus 6 FiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 6 FICPQCMKSLGSAD 19 (34)
T ss_dssp EECTTTCCEESSHH
T ss_pred cCCcHHHHHcCCHH
Confidence 78999999998643
No 113
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=32.72 E-value=21 Score=24.91 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=10.5
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+.....
T Consensus 4 py~C~~C~k~F~~~~~ 19 (60)
T 4gzn_C 4 PFFCNFCGKTYRDASG 19 (60)
T ss_dssp CEECTTTCCEESSHHH
T ss_pred CccCCCCCCEeCCHHH
Confidence 3667777777765443
No 114
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=32.69 E-value=20 Score=30.18 Aligned_cols=24 Identities=29% Similarity=0.872 Sum_probs=16.6
Q ss_pred ccccccCcC--CCC--c----cceEecCcccc
Q 021022 131 QKVQQVCVN--CGV--C----MGEYFCESCKL 154 (318)
Q Consensus 131 Q~v~~~C~~--Cg~--~----f~~YfC~~Ckl 154 (318)
+.....||+ ||. = +.|+||++|.+
T Consensus 115 ~~~~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 115 TKLRRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp ECCSCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred EECcCcCCCccCCCceEecccCCCcccCCCce
Confidence 344567999 987 3 35788888864
No 115
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=32.55 E-value=12 Score=25.75 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=25.7
Q ss_pred CCcccccccccCCceeEEc-CCCCccchHHHHHHH---hcCCCCCCCCC
Q 021022 208 DCPVCCEYLFETRQDVIVL-PCGHTIHKNCLKEMR---EHHQYACPICS 252 (318)
Q Consensus 208 ~CpIClE~lf~s~~~v~~L-pCGH~fH~~Cl~~wl---~~~~~~CPiCr 252 (318)
.|.||.....++..-+.-- .|.-.||..|+.--. ....|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778876432211111112 577889999976421 12568999985
No 116
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=32.33 E-value=27 Score=30.47 Aligned_cols=55 Identities=27% Similarity=0.629 Sum_probs=29.6
Q ss_pred ecCccc-cccCCC-CCCeeecCCCCceeecCCcceeeccCccceeeccccccccccC--CCCCCCCccccc
Q 021022 148 FCESCK-LFDDDT-SKKQYHCDGCGICRIGGCDNFFHCNKCRCCYSMLLKNSHPCVE--GAMHHDCPVCCE 214 (318)
Q Consensus 148 fC~~Ck-l~ddd~-~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~Cie--~~~~~~CpIClE 214 (318)
||++|+ .|+++. +...-.||.| +++||- .|..++......-.+ ....-.||.|..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C--------~~W~H~----~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~ 62 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKC--------DRWVHS----KCENLSDEMYEILSNLPESVAYTCVNCTE 62 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTT--------CCEEEG----GGSSCCHHHHHHHHHSHHHHCCCCTTTCC
T ss_pred cCCCCcCccCCcccCCCeEECCCC--------Ccccch----hccccCHHHHHHhhcCCCCCeeECcCCCC
Confidence 478884 565543 3456778777 677885 455443211000000 012578999975
No 117
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=31.80 E-value=19 Score=33.26 Aligned_cols=19 Identities=32% Similarity=1.125 Sum_probs=12.7
Q ss_pred ccCcCCCC----------ccceEecCccc
Q 021022 135 QVCVNCGV----------CMGEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~----------~f~~YfC~~Ck 153 (318)
-+||+||. +.|..||+.|+
T Consensus 35 ~yCPnCG~~~l~~f~nN~PVaDF~C~~C~ 63 (257)
T 4esj_A 35 SYCPNCGNNPLNHFENNRPVADFYCNHCS 63 (257)
T ss_dssp CCCTTTCCSSCEEC----CCCEEECTTTC
T ss_pred CcCCCCCChhhhhccCCCcccccccCCcc
Confidence 46999988 34556666664
No 118
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=31.48 E-value=38 Score=18.04 Aligned_cols=16 Identities=31% Similarity=0.671 Sum_probs=12.6
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1klr_A 2 TYQCQYCEFRSADSSN 17 (30)
T ss_dssp CCCCSSSSCCCSCSHH
T ss_pred CccCCCCCCccCCHHH
Confidence 3789999999986544
No 119
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=31.19 E-value=33 Score=25.42 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=29.7
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHH----hcCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMR----EHHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl----~~~~~~CPiCrks~~ 256 (318)
...| ||.........-+.--.|.-.||..|+.--. ....|.||.|+....
T Consensus 12 ~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 3456 8876321112112222688999999996321 124688999997653
No 120
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=31.15 E-value=15 Score=22.94 Aligned_cols=16 Identities=31% Similarity=0.831 Sum_probs=13.1
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.++||+|+..+.|...
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 4689999999988654
No 121
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=30.98 E-value=46 Score=23.61 Aligned_cols=42 Identities=21% Similarity=0.524 Sum_probs=28.4
Q ss_pred CCCCCccccccccc---CCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFE---TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~---s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
....|+.|.+.+.. ....+..+ |..+|..| ++|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~C---------F~C~~C~~~L~~ 58 (77)
T 2egq_A 14 VAKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYC---------FHCKKCSVNLAN 58 (77)
T ss_dssp CCCCCSSSCCCCCCCSSCCCEEEET--TEEEETTT---------CBCSSSCCBCTT
T ss_pred hCccCcccCCcccCCCCCceeEEEC--cceeCccc---------CEehhcCCCCCC
Confidence 34679999887664 22333333 78888766 568899988863
No 122
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.33 E-value=5.9 Score=27.73 Aligned_cols=46 Identities=24% Similarity=0.558 Sum_probs=29.0
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSK 253 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrk 253 (318)
..+..|.||.+. ..-+.--.|.-.||..|+.+-|.. +...||.|.+
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 346679999862 211111267899999999864432 3456888754
No 123
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=29.27 E-value=25 Score=25.67 Aligned_cols=17 Identities=29% Similarity=0.724 Sum_probs=13.2
Q ss_pred CCCCCCCCCcccCchhH
Q 021022 244 HQYACPICSKSVCDMSK 260 (318)
Q Consensus 244 ~~~~CPiCrks~~d~~~ 260 (318)
..|.|++|.+.+.....
T Consensus 44 ~~~~C~~C~~~f~~~~~ 60 (106)
T 2ee8_A 44 RPYTCDICHKAFRRQDH 60 (106)
T ss_dssp CCCBCSSSCCBCSCHHH
T ss_pred CCcCCCCccchhCCHHH
Confidence 45899999999986543
No 124
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=29.23 E-value=27 Score=24.48 Aligned_cols=27 Identities=33% Similarity=0.751 Sum_probs=11.9
Q ss_pred ceEecCcc-ccccCCC--CCCeeecCCCCc
Q 021022 145 GEYFCESC-KLFDDDT--SKKQYHCDGCGI 171 (318)
Q Consensus 145 ~~YfC~~C-kl~ddd~--~k~~yHC~~Cgi 171 (318)
+.|-|..| +-|+++. -.+--+|+.||.
T Consensus 2 ~iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 2 AVYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp ---CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred cEEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 34444444 3333332 225566777775
No 125
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=29.16 E-value=21 Score=25.93 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=14.6
Q ss_pred ecCCCCccccccccCcCCCC
Q 021022 123 ICSLCGTEQKVQQVCVNCGV 142 (318)
Q Consensus 123 ~C~~C~~eQ~v~~~C~~Cg~ 142 (318)
.|+.|+..++.+ .|+|||.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 488888887665 6888886
No 126
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=29.04 E-value=85 Score=32.79 Aligned_cols=82 Identities=26% Similarity=0.598 Sum_probs=52.1
Q ss_pred ccccccCCCCCCCCccccccccc----CC--ceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHh----
Q 021022 196 NSHPCVEGAMHHDCPVCCEYLFE----TR--QDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKY---- 265 (318)
Q Consensus 196 ~~H~Cie~~~~~~CpIClE~lf~----s~--~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~l---- 265 (318)
++-+|....-...||+|.-.+.+ ++ ...--|.||--|+..|++.+.+. +|+-.+.-..|++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~c~~c~~~~~~~--------~~~~~~~~~~w~~~~~~~ 74 (776)
T 4gut_A 3 GSRKCEKAGCTATCPVCFASASERCAKNGYTSRWYHLSCGEHFCNECFDHYYRS--------HKDGYDKYTTWKKIWTSN 74 (776)
T ss_dssp SBSSBSSTTCCCSSCCBSCCCSTTCCTTSCBSCEEEEETTEEEEHHHHHHHHST--------TSTTHHHHHHHHHHHHHT
T ss_pred CccccccCCCcccccHHHHHHHHHHHhCCCCcceeEeccccchhHHHHHHHhcc--------CcchhHHHHHHHHHHHhC
Confidence 35677776667889999754421 11 23456899999999999998764 22222333356552
Q ss_pred -------HHHHHcCCCChhhhcCcceEEcC--CCCC
Q 021022 266 -------DREIAATPMPEAYLNKKVWILCN--DCGK 292 (318)
Q Consensus 266 -------D~~i~~~pmPeey~~~~v~IlCn--DC~~ 292 (318)
...++++.+| =|..|. +|++
T Consensus 75 ~~~~~~~~~~~~~~~l~-------~~~~c~~~~c~~ 103 (776)
T 4gut_A 75 GKTEPSPKAFMADQQLP-------YWVQCTKPECRK 103 (776)
T ss_dssp CCSCCCHHHHHHHHTSC-------CEEECCCTTTCC
T ss_pred CccchhHHHHHHhccCc-------HhhhcCcccccc
Confidence 2345555554 378899 9987
No 127
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=28.63 E-value=35 Score=17.98 Aligned_cols=15 Identities=33% Similarity=0.886 Sum_probs=11.8
Q ss_pred CCCCCCCcccCchhH
Q 021022 246 YACPICSKSVCDMSK 260 (318)
Q Consensus 246 ~~CPiCrks~~d~~~ 260 (318)
|.|++|.+.+.....
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 679999999876543
No 128
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=28.50 E-value=16 Score=31.16 Aligned_cols=46 Identities=17% Similarity=0.419 Sum_probs=30.5
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCccc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKSV 255 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks~ 255 (318)
+..|.||.+. ++-+.-=.|.-.||..|+.+-+.. +...||.|+...
T Consensus 4 ~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 4 EDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp CSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 5678999852 221111157889999999876543 346799999754
No 129
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=28.45 E-value=23 Score=25.79 Aligned_cols=24 Identities=21% Similarity=0.521 Sum_probs=15.8
Q ss_pred ceeecCCCCcc--ccccccCcCCCCc
Q 021022 120 NQVICSLCGTE--QKVQQVCVNCGVC 143 (318)
Q Consensus 120 ~~v~C~~C~~e--Q~v~~~C~~Cg~~ 143 (318)
++.+|..|... ++..-.||.|+.+
T Consensus 10 ~~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 10 PAGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CCEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCCcCcCCCCCcCCCccccCcCCCCC
Confidence 35688888763 4555667777754
No 130
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=28.12 E-value=35 Score=23.06 Aligned_cols=8 Identities=25% Similarity=0.812 Sum_probs=3.8
Q ss_pred CcCCCCcc
Q 021022 137 CVNCGVCM 144 (318)
Q Consensus 137 C~~Cg~~f 144 (318)
|..||..|
T Consensus 17 C~~C~k~F 24 (62)
T 1vd4_A 17 CPVCSSTF 24 (62)
T ss_dssp CSSSCCEE
T ss_pred CCCCCchh
Confidence 44444444
No 131
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=28.03 E-value=28 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=18.7
Q ss_pred CceeecCCCCccccccccCcCCCCc
Q 021022 119 VNQVICSLCGTEQKVQQVCVNCGVC 143 (318)
Q Consensus 119 v~~v~C~~C~~eQ~v~~~C~~Cg~~ 143 (318)
..+..|..|...+ ..+.|||||..
T Consensus 9 ~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEE-SSSSCTTTCCC
T ss_pred chhhhHHhCCccc-cCCcCCCccCC
Confidence 4678899999988 67889999843
No 132
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=27.26 E-value=54 Score=25.39 Aligned_cols=48 Identities=23% Similarity=0.552 Sum_probs=30.2
Q ss_pred CCCcccccccccCCceeEEc--CCCCccchHHHHHHHhc--CCCCCCCCCcccCch
Q 021022 207 HDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMREH--HQYACPICSKSVCDM 258 (318)
Q Consensus 207 ~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl~~--~~~~CPiCrks~~d~ 258 (318)
..| ||... .+. ..++. .|.-.||..|+..-+.. ..+.||.|+..-.+.
T Consensus 29 vrC-iC~~~-~~~--~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 29 TRC-ICGFT-HDD--GYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp CCC-TTSCC-SCS--SCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCH
T ss_pred EEe-ECCCc-cCC--CcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCH
Confidence 356 77653 222 23333 68899999999763321 358899998655543
No 133
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=27.24 E-value=35 Score=23.55 Aligned_cols=43 Identities=16% Similarity=0.440 Sum_probs=28.1
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCch
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDM 258 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~ 258 (318)
....|+.|.+.+.... .++ ..=|..+|..|+ +|-.|++++.+.
T Consensus 10 ~~~~C~~C~~~i~~~e-~~~-~~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 10 ASATCERCKGGFAPAE-KIV-NSNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp TTCBCTTTCCBCCTTC-EEE-EETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred CCccchhcCccccCCc-eEE-EeCcCeeCcCCC---------cccCCCCCCCCC
Confidence 4567999988765432 222 234778887765 688888888653
No 134
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=27.04 E-value=21 Score=26.43 Aligned_cols=50 Identities=20% Similarity=0.477 Sum_probs=30.9
Q ss_pred CCCCCCCcccccccccCCceeEEc--CCCCccchHHHHHHH-hcCCCCCCCCCc
Q 021022 203 GAMHHDCPVCCEYLFETRQDVIVL--PCGHTIHKNCLKEMR-EHHQYACPICSK 253 (318)
Q Consensus 203 ~~~~~~CpIClE~lf~s~~~v~~L--pCGH~fH~~Cl~~wl-~~~~~~CPiCrk 253 (318)
...+..|.||.+.-.+.. ..+++ .|.-.||..|+..-+ -.+.-.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~-~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNS-NVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSS-SCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 355778999986311111 22333 678899999998532 224466888864
No 135
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=26.61 E-value=27 Score=30.15 Aligned_cols=53 Identities=19% Similarity=0.546 Sum_probs=34.7
Q ss_pred ccceeeccccccccccCCCCCCCCcccccccccCCceeEEc---CCCCccchHHHHHHHhc
Q 021022 186 CRCCYSMLLKNSHPCVEGAMHHDCPVCCEYLFETRQDVIVL---PCGHTIHKNCLKEMREH 243 (318)
Q Consensus 186 C~~C~s~~l~~~H~Cie~~~~~~CpIClE~lf~s~~~v~~L---pCGH~fH~~Cl~~wl~~ 243 (318)
|..|...-+.....=.+...+..|.||.+- + .+..- .|...|+..||+.++..
T Consensus 59 C~~Ck~~y~e~~f~~DeDG~~~yC~wC~~G----g-~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 59 CQNCKNCFLECAYQYDDDGYQSYCTICCGG----R-EVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp CHHHHHHHHHHTTCBCTTSSBSSCTTTSCC----S-EEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred hHHHHHHHhhcccccCCCCCcceeeEecCC----C-eEEeeCCCCCCCchhHHHHHHhcCH
Confidence 334443333444455677889999999972 2 23222 47789999999998753
No 136
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=26.08 E-value=55 Score=22.27 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=23.2
Q ss_pred CCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcceEEcCCCCCCc
Q 021022 244 HQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTS 294 (318)
Q Consensus 244 ~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v~IlCnDC~~~s 294 (318)
..+.|++|.+.+.......+-+.... + .....|..|++..
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~----------~-~~~~~C~~C~~~f 67 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHT----------G-EKPHKCQVCGKAF 67 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHH----------T-CCCEECTTTSCEE
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhc----------C-CCCCcCCCcchhh
Confidence 45789999998876544333222111 1 1236688888754
No 137
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.78 E-value=33 Score=25.60 Aligned_cols=8 Identities=38% Similarity=1.145 Sum_probs=4.6
Q ss_pred eecCCCCc
Q 021022 164 YHCDGCGI 171 (318)
Q Consensus 164 yHC~~Cgi 171 (318)
-+|..||-
T Consensus 46 irCp~CG~ 53 (70)
T 1twf_L 46 VRCKDCGH 53 (70)
T ss_dssp TCCSSSCC
T ss_pred ccCCCCCc
Confidence 36666664
No 138
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=25.65 E-value=60 Score=20.96 Aligned_cols=14 Identities=14% Similarity=0.847 Sum_probs=9.7
Q ss_pred CCCCCCCcccCchh
Q 021022 246 YACPICSKSVCDMS 259 (318)
Q Consensus 246 ~~CPiCrks~~d~~ 259 (318)
|.|++|.+.+....
T Consensus 3 ~~C~~C~~~f~~~~ 16 (60)
T 2adr_A 3 FVCEVCTRAFARQE 16 (60)
T ss_dssp BCCTTTCCCBSCHH
T ss_pred CcCCCCccccCCHH
Confidence 66777877776543
No 139
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=25.52 E-value=34 Score=23.81 Aligned_cols=32 Identities=28% Similarity=0.726 Sum_probs=17.2
Q ss_pred ccCcCCCCccceEecCccccc---cCCCCCCeeecCCCC
Q 021022 135 QVCVNCGVCMGEYFCESCKLF---DDDTSKKQYHCDGCG 170 (318)
Q Consensus 135 ~~C~~Cg~~f~~YfC~~Ckl~---ddd~~k~~yHC~~Cg 170 (318)
..|+.||..-+.|| .+= .|++..-.|.|..||
T Consensus 16 ~~Cp~Cg~~~~~~~----q~Q~rsadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWW----EMQTRAGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEE----EECCSSSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEE----EeecccCCCCCcEEEEcCCCC
Confidence 35777777655555 111 233445556666665
No 140
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=25.40 E-value=96 Score=23.19 Aligned_cols=21 Identities=19% Similarity=0.602 Sum_probs=10.1
Q ss_pred ceeecC-CcceeeccCccceee
Q 021022 171 ICRIGG-CDNFFHCNKCRCCYS 191 (318)
Q Consensus 171 iCR~G~-~~~ffHC~~C~~C~s 191 (318)
||+.++ .+....|+.|..-|-
T Consensus 31 vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCGGGEEECTTTCCEEE
T ss_pred ccCCCCCCcceeEeCCCCCccC
Confidence 444433 234555666655443
No 141
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.26 E-value=57 Score=22.23 Aligned_cols=14 Identities=29% Similarity=0.543 Sum_probs=8.4
Q ss_pred CCCCCCCCcccCch
Q 021022 245 QYACPICSKSVCDM 258 (318)
Q Consensus 245 ~~~CPiCrks~~d~ 258 (318)
.|.|++|.+.+...
T Consensus 17 ~~~C~~C~k~f~~~ 30 (74)
T 2lce_A 17 PYKCDRCQASFRYK 30 (74)
T ss_dssp SBCCTTSSCCBSCH
T ss_pred CeECCCCCceeCCH
Confidence 35666666666554
No 142
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.69 E-value=44 Score=17.78 Aligned_cols=16 Identities=13% Similarity=0.758 Sum_probs=12.5
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 3789999999986543
No 143
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=24.63 E-value=63 Score=18.48 Aligned_cols=16 Identities=31% Similarity=0.810 Sum_probs=12.8
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+...+.
T Consensus 2 p~~C~~C~k~F~~~~~ 17 (33)
T 1rim_A 2 KFACPECPKRFMRSDH 17 (33)
T ss_dssp CCCCSSSCCCCSSHHH
T ss_pred cccCCCCCchhCCHHH
Confidence 3789999999987554
No 144
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=24.50 E-value=45 Score=26.18 Aligned_cols=32 Identities=28% Similarity=0.754 Sum_probs=24.4
Q ss_pred CCCCCCcccccccccCCceeEEcC---CCCccchHHHHHH
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLP---CGHTIHKNCLKEM 240 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~Lp---CGH~fH~~Cl~~w 240 (318)
..+..|+||-. +++. ..+| |+-+||..||.+.
T Consensus 13 ~~D~~C~VC~~--~t~~---~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV--WTAE---SLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC--CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc--cccc---ceeccccccccccHhhcccc
Confidence 45789999984 5533 2555 5899999999996
No 145
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=24.45 E-value=14 Score=24.70 Aligned_cols=9 Identities=44% Similarity=0.752 Sum_probs=4.6
Q ss_pred CeeecCCCC
Q 021022 162 KQYHCDGCG 170 (318)
Q Consensus 162 ~~yHC~~Cg 170 (318)
.+|.|+.||
T Consensus 39 ~~~~C~~C~ 47 (66)
T 2drp_A 39 KVYPCPFCF 47 (66)
T ss_dssp CCEECTTTC
T ss_pred cCeECCCCC
Confidence 455555554
No 146
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=24.41 E-value=46 Score=17.55 Aligned_cols=16 Identities=25% Similarity=0.694 Sum_probs=12.4
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 3789999999876543
No 147
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.28 E-value=56 Score=23.06 Aligned_cols=43 Identities=19% Similarity=0.430 Sum_probs=28.2
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
.....|+.|.+.+.....-+.. =|..+|.+| ++|-.|++++..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQC---------FVCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTT---------CCCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEecccc---------CeECCCCCCCCC
Confidence 3457899999876533222223 377888765 558888888764
No 148
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=24.19 E-value=30 Score=25.10 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=22.4
Q ss_pred ceEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 021022 283 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 316 (318)
Q Consensus 283 v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~ 316 (318)
..+.|..|++. ...| +-|+.||.|+-+++
T Consensus 29 ~l~~c~~cGe~--~~~H---~vc~~CG~Y~gr~V 57 (60)
T 3v2d_5 29 TLVPCPECKAM--KPPH---TVCPECGYYAGRKV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---SCCTTTCEETTEEC
T ss_pred ceeECCCCCCe--ecce---EEcCCCCcCCCEEe
Confidence 46889999974 3345 45999999999875
No 149
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=23.73 E-value=37 Score=22.96 Aligned_cols=31 Identities=16% Similarity=0.273 Sum_probs=19.5
Q ss_pred CCCCCCCCcccCchhHHHHHhHHHHHcCCCC
Q 021022 245 QYACPICSKSVCDMSKVWEKYDREIAATPMP 275 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~~~~~lD~~i~~~pmP 275 (318)
.|.|++|.+.+.......+-+...-...|-|
T Consensus 37 ~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 37 PFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp SEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 4789999999987655444444434444444
No 150
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=23.56 E-value=33 Score=31.46 Aligned_cols=19 Identities=32% Similarity=1.046 Sum_probs=15.0
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021022 135 QVCVNCGVCM--------GEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~~f--------~~YfC~~Ck 153 (318)
+.|+.||... +.|||+.|.
T Consensus 246 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 246 NPCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCeEEEEEECCCCeEECCCCC
Confidence 5799999887 468888874
No 151
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=23.16 E-value=1.3e+02 Score=21.80 Aligned_cols=36 Identities=22% Similarity=0.627 Sum_probs=20.0
Q ss_pred cCCCCCCeeecCCCCceeecC-CcceeeccCccceeec
Q 021022 156 DDDTSKKQYHCDGCGICRIGG-CDNFFHCNKCRCCYSM 192 (318)
Q Consensus 156 ddd~~k~~yHC~~CgiCR~G~-~~~ffHC~~C~~C~s~ 192 (318)
.|+....-..| .|.||+.+. .++..-|+.|..-|-+
T Consensus 9 ~~~~~w~C~~C-~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 9 KDDVNRLCRVC-ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp TTCTTSCCTTT-SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred cCCCCeECCCC-CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 34443333444 456666543 4577788888765543
No 152
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=22.93 E-value=35 Score=31.22 Aligned_cols=19 Identities=37% Similarity=1.100 Sum_probs=15.5
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021022 135 QVCVNCGVCM--------GEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~~f--------~~YfC~~Ck 153 (318)
+.|+.||... +.|||+.|.
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 269 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQ 269 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTS
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5699999888 678888885
No 153
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.75 E-value=74 Score=22.73 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=26.6
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
....|+.|.+.+..... + +..=|..+|.+| ++|-.|++++..
T Consensus 14 ~~~~C~~C~~~I~~~~~-~-~~a~~~~~H~~C---------F~C~~C~~~L~~ 55 (82)
T 1x63_A 14 DSPKCKGCFKAIVAGDQ-N-VEYKGTVWHKDC---------FTCSNCKQVIGT 55 (82)
T ss_dssp CSCBCSSSCCBCCSSSC-E-EECSSCEEETTT---------CCCSSSCCCCTT
T ss_pred cCCcCccCCcccccCce-E-EEECcccccccc---------CchhhCCCccCC
Confidence 34578889886653222 2 223377888765 458888888764
No 154
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=22.57 E-value=36 Score=30.97 Aligned_cols=19 Identities=32% Similarity=1.027 Sum_probs=15.2
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021022 135 QVCVNCGVCM--------GEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~~f--------~~YfC~~Ck 153 (318)
+.|+.||... +.|||+.|.
T Consensus 235 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 235 EPCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeEEEEECCCCeEECCCCC
Confidence 5699999887 678888884
No 155
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=22.54 E-value=38 Score=25.27 Aligned_cols=36 Identities=25% Similarity=0.433 Sum_probs=25.7
Q ss_pred ceeecCCCCccccc---c---ccCcCCCCccceEecCccccc
Q 021022 120 NQVICSLCGTEQKV---Q---QVCVNCGVCMGEYFCESCKLF 155 (318)
Q Consensus 120 ~~v~C~~C~~eQ~v---~---~~C~~Cg~~f~~YfC~~Ckl~ 155 (318)
-.|.|.-|..+|.+ + -.|..||..+++-.=++-+|-
T Consensus 6 m~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 36888888888876 1 358888888877665555554
No 156
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.52 E-value=45 Score=23.37 Aligned_cols=40 Identities=20% Similarity=0.478 Sum_probs=27.0
Q ss_pred CCCCccccccccc--CCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccC
Q 021022 206 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVC 256 (318)
Q Consensus 206 ~~~CpIClE~lf~--s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~ 256 (318)
...|+-|.+.+.. +.. + +..-|..+|.+| ++|-.|++++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~-~-~~a~~~~wH~~C---------F~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTK-Y-ISFEERQWHNDC---------FNCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCS-C-EECSSCEECTTT---------CBCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcc-e-EEECCcccCccc---------CEeccCCCcCC
Confidence 4578889887654 222 2 233588888776 46889998875
No 157
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=22.44 E-value=44 Score=19.25 Aligned_cols=17 Identities=24% Similarity=0.728 Sum_probs=13.2
Q ss_pred CCCCCCCCCcccCchhH
Q 021022 244 HQYACPICSKSVCDMSK 260 (318)
Q Consensus 244 ~~~~CPiCrks~~d~~~ 260 (318)
..|.||+|.+.+.....
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSBCCTTTCCCBSSHHH
T ss_pred CCccCCCCCcccCcHHH
Confidence 35889999999986543
No 158
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=22.43 E-value=32 Score=26.77 Aligned_cols=47 Identities=19% Similarity=0.470 Sum_probs=31.1
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCcc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 254 (318)
..+..|.||.+. ++-+.=-.|.-.||..|+.+=+.. +...||.|...
T Consensus 23 ~n~~~C~vC~~~----g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKP----GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSS----SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCC----CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 446789999862 221111257788999999876542 34679999854
No 159
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.34 E-value=39 Score=24.26 Aligned_cols=16 Identities=38% Similarity=0.966 Sum_probs=7.0
Q ss_pred CcCCCCccceEecCccc
Q 021022 137 CVNCGVCMGEYFCESCK 153 (318)
Q Consensus 137 C~~Cg~~f~~YfC~~Ck 153 (318)
|.-|+. .++|.|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 334444 4444444443
No 160
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.30 E-value=82 Score=22.30 Aligned_cols=68 Identities=19% Similarity=0.429 Sum_probs=42.2
Q ss_pred CCCCccccccccc--CCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCchhHHHHHhHHHHHcCCCChhhhcCcc
Q 021022 206 HHDCPVCCEYLFE--TRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKV 283 (318)
Q Consensus 206 ~~~CpIClE~lf~--s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d~~~~~~~lD~~i~~~pmPeey~~~~v 283 (318)
...|+.|.+.+.. ....+. .=|..+|.+| ++|-.|++++.... |...-.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~C---------F~C~~C~~~L~~~~------------------f~~~~g 55 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSEC---------FNCGKCSVSLVGKG------------------FLTQNK 55 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGG---------CBCTTTCCBCSSSC------------------EEEETT
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCccc---------CChhhCCCcCCCCc------------------eEeECC
Confidence 4679999887664 223333 3488889876 56889998886311 111224
Q ss_pred eEEcCCCCCCccccceeeeccCCCC
Q 021022 284 WILCNDCGKTSNVQFHVLAQKCPNC 308 (318)
Q Consensus 284 ~IlCnDC~~~s~v~~H~lg~KC~~C 308 (318)
.++|.+|-.+- ++-+|..+
T Consensus 56 ~~yC~~cy~~~------f~~~C~~~ 74 (76)
T 1x68_A 56 EIFCQKCGSGM------DTDISGPS 74 (76)
T ss_dssp EEEETTTTCCC------CCCSSSSS
T ss_pred EEECHHHhhhh------hCCcCCCC
Confidence 68899887553 34566544
No 161
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=22.28 E-value=59 Score=22.91 Aligned_cols=25 Identities=20% Similarity=0.511 Sum_probs=11.5
Q ss_pred ceEecCccccccCCCCCCeeecCCC
Q 021022 145 GEYFCESCKLFDDDTSKKQYHCDGC 169 (318)
Q Consensus 145 ~~YfC~~Ckl~ddd~~k~~yHC~~C 169 (318)
+..+|.+|+.-+++....+.-||.|
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C 29 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKC 29 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCC
Confidence 3445555554433223345555554
No 162
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.25 E-value=37 Score=31.05 Aligned_cols=19 Identities=26% Similarity=1.058 Sum_probs=15.3
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021022 135 QVCVNCGVCM--------GEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~~f--------~~YfC~~Ck 153 (318)
+.|+.||... +.|||+.|.
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5699999888 678888884
No 163
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=22.08 E-value=37 Score=31.03 Aligned_cols=19 Identities=37% Similarity=1.006 Sum_probs=15.3
Q ss_pred ccCcCCCCcc--------ceEecCccc
Q 021022 135 QVCVNCGVCM--------GEYFCESCK 153 (318)
Q Consensus 135 ~~C~~Cg~~f--------~~YfC~~Ck 153 (318)
+.|+.||... +.|||+.|.
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 262 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQ 262 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 5699999887 678888885
No 164
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.92 E-value=50 Score=17.77 Aligned_cols=16 Identities=25% Similarity=0.727 Sum_probs=12.4
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|+.|.+.+.....
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 3789999999876543
No 165
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=21.84 E-value=17 Score=26.61 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=29.5
Q ss_pred CCCCCCcccccccccCCceeEEcCCCCccchHHHHHHHh--cCCCCCCCCCcc
Q 021022 204 AMHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMRE--HHQYACPICSKS 254 (318)
Q Consensus 204 ~~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~--~~~~~CPiCrks 254 (318)
.....| ||... .....-+.=-.|.-.||..|+..-.. ...|.||.|+++
T Consensus 17 ~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 345567 88763 22111111226889999999975331 146889998764
No 166
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.69 E-value=1e+02 Score=18.79 Aligned_cols=18 Identities=22% Similarity=0.541 Sum_probs=13.8
Q ss_pred CCCCCCCCCcccCchhHH
Q 021022 244 HQYACPICSKSVCDMSKV 261 (318)
Q Consensus 244 ~~~~CPiCrks~~d~~~~ 261 (318)
..|.|++|.+.+......
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHL 28 (46)
T ss_dssp CSCCCSSSCCCCSSHHHH
T ss_pred CCeECCCCCcccCCHHHH
Confidence 358899999999876543
No 167
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=21.52 E-value=17 Score=25.61 Aligned_cols=46 Identities=24% Similarity=0.556 Sum_probs=29.7
Q ss_pred CCCCCcccccccccCCceeEEcCCCCccchHHHHHHHhc---CCCCCCCCCcc
Q 021022 205 MHHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREH---HQYACPICSKS 254 (318)
Q Consensus 205 ~~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~---~~~~CPiCrks 254 (318)
.+..|.||.+. +.-+.=-.|.-.||..|+.+-+.. +...||.|...
T Consensus 4 ~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC----SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC----CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45779999862 211111267899999999964432 34669988653
No 168
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=21.48 E-value=33 Score=26.34 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=23.5
Q ss_pred ccccccCcCCCCccceEecCccccccCCCCCCeeecCCCCceeecC
Q 021022 131 QKVQQVCVNCGVCMGEYFCESCKLFDDDTSKKQYHCDGCGICRIGG 176 (318)
Q Consensus 131 Q~v~~~C~~Cg~~f~~YfC~~Ckl~ddd~~k~~yHC~~CgiCR~G~ 176 (318)
|...-.|++||... +| ++...+++|+.||-=-.||
T Consensus 24 q~~~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 24 MNEDHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp HHSCEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred ccccCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 33344677777632 22 3456899999999887876
No 169
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=21.25 E-value=42 Score=23.08 Aligned_cols=28 Identities=32% Similarity=0.936 Sum_probs=16.1
Q ss_pred cceEecCcccc-ccC---CC-----CCCeeecCCCCc
Q 021022 144 MGEYFCESCKL-FDD---DT-----SKKQYHCDGCGI 171 (318)
Q Consensus 144 f~~YfC~~Ckl-~dd---d~-----~k~~yHC~~Cgi 171 (318)
|.+|-|.+|-+ ||. |+ --.-|.|+.||.
T Consensus 2 m~~y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 2 MQKYVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp CCCEEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred CCEEECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 66788888865 441 21 112367777763
No 170
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.18 E-value=54 Score=18.65 Aligned_cols=16 Identities=19% Similarity=0.459 Sum_probs=12.9
Q ss_pred CCCCCCCCcccCchhH
Q 021022 245 QYACPICSKSVCDMSK 260 (318)
Q Consensus 245 ~~~CPiCrks~~d~~~ 260 (318)
.|.|++|.+.+.....
T Consensus 9 ~~~C~~C~k~f~~~~~ 24 (36)
T 2elr_A 9 THLCDMCGKKFKSKGT 24 (36)
T ss_dssp SCBCTTTCCBCSSHHH
T ss_pred CeecCcCCCCcCchHH
Confidence 5889999999986544
No 171
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.16 E-value=76 Score=22.00 Aligned_cols=41 Identities=17% Similarity=0.562 Sum_probs=26.1
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...|+.|.+.+......+.. =|..+|.+| ++|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETC---------FICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTT---------TCCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccC---------CcccccCCccCC
Confidence 35788888866542222222 377888765 458888888764
No 172
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.80 E-value=61 Score=22.52 Aligned_cols=41 Identities=22% Similarity=0.553 Sum_probs=26.9
Q ss_pred CCCCcccccccccCCceeEEcCCCCccchHHHHHHHhcCCCCCCCCCcccCc
Q 021022 206 HHDCPVCCEYLFETRQDVIVLPCGHTIHKNCLKEMREHHQYACPICSKSVCD 257 (318)
Q Consensus 206 ~~~CpIClE~lf~s~~~v~~LpCGH~fH~~Cl~~wl~~~~~~CPiCrks~~d 257 (318)
...|+.|.+.+.... .++..=|..+|.+| ++|-.|++++..
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~C---------F~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHC---------FLCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTT---------CBCTTTCCBTTT
T ss_pred CCCCccCCCccccCc--cEEEECccccCccc---------CeECCCCCcCCC
Confidence 457888888665422 22334588888765 458888887754
No 173
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=20.78 E-value=47 Score=23.98 Aligned_cols=29 Identities=31% Similarity=0.652 Sum_probs=22.6
Q ss_pred ceEEcCCCCCCccccceeeeccCCCCCCcccccc
Q 021022 283 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLT 316 (318)
Q Consensus 283 v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~~ 316 (318)
..+.|..|++. ...| +-|+.||-|+-+++
T Consensus 29 ~l~~c~~cG~~--~~pH---~vc~~CG~Y~gr~v 57 (60)
T 2zjr_Z 29 NLTECPQCHGK--KLSH---HICPNCGYYDGRQV 57 (60)
T ss_dssp CCEECTTTCCE--ECTT---BCCTTTCBSSSBCS
T ss_pred CceECCCCCCE--eCCc---eEcCCCCcCCCEEe
Confidence 56789999977 2334 46999999999875
No 174
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=20.45 E-value=47 Score=26.80 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEcCCCCCCccccceeeeccCCCCCCccccc
Q 021022 283 VWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRL 315 (318)
Q Consensus 283 v~IlCnDC~~~s~v~~H~lg~KC~~C~SyNT~~ 315 (318)
....|.+||-..... =...-+|+.|+|-|...
T Consensus 66 ~p~~C~~CG~~F~~~-~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 66 KPAQCRKCGFVFKAE-INIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CCCBBTTTCCBCCCC-SSCCSSCSSSCCCCBCC
T ss_pred ECcChhhCcCeeccc-CCCCCCCcCCCCCccCC
Confidence 456799999875111 12346999999999764
No 175
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=20.37 E-value=46 Score=22.67 Aligned_cols=12 Identities=33% Similarity=0.866 Sum_probs=5.9
Q ss_pred CCCCCCCcccCc
Q 021022 246 YACPICSKSVCD 257 (318)
Q Consensus 246 ~~CPiCrks~~d 257 (318)
|.||+|.+.+..
T Consensus 43 ~~C~~C~~~f~~ 54 (72)
T 1x6e_A 43 YKCLECGKAFSQ 54 (72)
T ss_dssp EECSSSCCEESS
T ss_pred eECCCCCcccCC
Confidence 445555555443
No 176
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=20.29 E-value=36 Score=18.22 Aligned_cols=15 Identities=27% Similarity=0.738 Sum_probs=11.9
Q ss_pred CCCCCCCCcccCchh
Q 021022 245 QYACPICSKSVCDMS 259 (318)
Q Consensus 245 ~~~CPiCrks~~d~~ 259 (318)
.|.|++|.+.+....
T Consensus 3 ~~~C~~C~k~f~~~~ 17 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKH 17 (28)
T ss_dssp SEECSSSCCEESCHH
T ss_pred CccCCCCCcccCCHH
Confidence 478999999988654
No 177
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=20.27 E-value=56 Score=23.09 Aligned_cols=12 Identities=25% Similarity=0.778 Sum_probs=7.9
Q ss_pred cceEecCccccc
Q 021022 144 MGEYFCESCKLF 155 (318)
Q Consensus 144 f~~YfC~~Ckl~ 155 (318)
|.+|.|.+|-+.
T Consensus 1 m~~y~C~~CGyv 12 (55)
T 2v3b_B 1 MRKWQCVVCGFI 12 (55)
T ss_dssp CCEEEETTTCCE
T ss_pred CCcEEeCCCCeE
Confidence 457778888543
Done!