Query 021027
Match_columns 318
No_of_seqs 246 out of 1822
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 11:40:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021027.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021027hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ewk_A Sensor protein; PAS dom 100.0 2.7E-28 9.2E-33 196.6 22.8 182 31-316 2-183 (227)
2 2gj3_A Nitrogen fixation regul 99.8 6.9E-19 2.3E-23 126.6 16.1 118 16-137 3-120 (120)
3 4hia_A LOV protein; PAS, HTH, 99.8 9E-18 3.1E-22 129.1 15.6 127 15-142 4-130 (176)
4 3f1p_B ARYL hydrocarbon recept 99.8 8.5E-18 2.9E-22 120.9 12.5 115 20-138 4-120 (121)
5 1n9l_A PHOT-LOV1, putative blu 99.8 5.2E-17 1.8E-21 114.7 15.5 108 27-135 2-109 (109)
6 2pr5_A Blue-light photorecepto 99.8 6E-17 2E-21 118.4 15.7 116 22-140 3-118 (132)
7 3p7n_A Sensor histidine kinase 99.7 1.8E-16 6.1E-21 129.8 18.4 121 15-139 60-183 (258)
8 3ue6_A Aureochrome1; PAS/LOV d 99.7 6.1E-17 2.1E-21 122.9 13.3 120 16-139 33-155 (166)
9 3mr0_A Sensory box histidine k 99.7 1.5E-16 5E-21 118.0 14.5 122 15-140 6-129 (142)
10 3t50_A Blue-light-activated hi 99.7 1.1E-16 3.6E-21 116.1 13.4 117 23-143 2-121 (128)
11 3f1p_A Endothelial PAS domain- 99.7 4.3E-17 1.5E-21 116.5 10.5 108 27-138 8-116 (117)
12 4eet_B Phototropin-2; LOV, blu 99.7 5.9E-16 2E-20 109.4 15.3 111 23-137 2-115 (115)
13 3mqq_A Transcriptional regulat 99.7 1.8E-16 6.2E-21 113.7 11.4 114 20-139 5-119 (120)
14 3lyx_A Sensory BOX/ggdef domai 99.7 1.4E-15 4.9E-20 108.4 15.7 120 15-138 4-123 (124)
15 3nja_A Probable ggdef family p 99.7 2.8E-16 9.5E-21 112.9 11.6 120 15-138 4-125 (125)
16 2z6d_A Phototropin-2; PAS-fold 99.7 3.4E-15 1.2E-19 107.2 15.8 121 16-140 4-127 (130)
17 1d06_A Nitrogen fixation regul 99.7 2.1E-15 7E-20 109.9 13.7 124 4-134 3-130 (130)
18 4f3l_A Mclock, circadian locom 99.7 2.1E-15 7E-20 129.2 15.1 65 17-84 85-149 (361)
19 3sw1_A Sensory box protein; li 99.6 2.5E-15 8.5E-20 113.5 13.2 125 15-143 22-149 (162)
20 3h9w_A Diguanylate cyclase wit 99.6 9.1E-16 3.1E-20 109.2 9.9 110 27-140 2-113 (115)
21 2vv6_A FIXL, sensor protein FI 99.6 4E-15 1.4E-19 106.5 13.0 111 27-143 2-116 (119)
22 2r78_A Sensor protein; sensory 99.6 1.4E-14 4.8E-19 103.4 15.6 110 15-134 8-117 (117)
23 3mxq_A Sensor protein; PSI2, M 99.6 1.2E-15 4.2E-20 113.6 10.1 120 15-139 19-150 (152)
24 3luq_A Sensor protein; PAS, hi 99.6 7E-15 2.4E-19 103.7 12.8 111 18-134 3-114 (114)
25 3k3c_A Protein RV1364C/MT1410; 99.6 2E-15 6.8E-20 113.7 10.0 123 15-143 14-142 (158)
26 2wkq_A NPH1-1, RAS-related C3 99.6 8.4E-15 2.9E-19 124.3 14.7 116 22-141 15-133 (332)
27 3kx0_X Uncharacterized protein 99.6 4.8E-15 1.7E-19 114.9 11.8 122 15-142 34-161 (185)
28 3ewk_A Sensor protein; PAS dom 99.6 3E-14 1E-18 114.2 15.2 112 17-132 110-227 (227)
29 3rty_A Period circadian protei 99.6 2.1E-14 7.1E-19 120.8 14.0 61 251-314 154-214 (339)
30 3icy_A Sensor protein; sensory 99.6 6.2E-15 2.1E-19 104.9 9.1 114 17-134 3-118 (118)
31 4f3l_B BMAL1B; BHLH, PAS, circ 99.6 3.4E-14 1.2E-18 122.5 14.7 61 251-314 278-338 (387)
32 2v0u_A NPH1-1, LOV2; kinase, t 99.6 4.5E-14 1.5E-18 103.6 13.3 116 20-139 4-122 (146)
33 2kdk_A ARYL hydrocarbon recept 99.6 5.7E-14 1.9E-18 100.6 12.6 112 22-137 7-120 (121)
34 3mjq_A Uncharacterized protein 99.5 4.9E-14 1.7E-18 101.3 10.0 116 21-143 2-117 (126)
35 3olo_A Two-component sensor hi 99.5 2.8E-13 9.4E-18 96.1 13.5 108 16-134 11-118 (118)
36 2l0w_A Potassium voltage-gated 99.5 5.5E-13 1.9E-17 96.8 15.0 115 18-136 19-138 (138)
37 1byw_A Protein (human ERG pota 99.5 9.5E-13 3.3E-17 91.3 15.1 107 29-136 2-110 (110)
38 3eeh_A Putative light and redo 99.5 1.5E-13 5.2E-18 98.0 10.6 116 15-134 8-125 (125)
39 3bwl_A Sensor protein; structu 99.5 8.2E-13 2.8E-17 95.1 14.2 118 7-134 7-126 (126)
40 4eho_A Bacteriophytochrome, PA 99.5 2.5E-14 8.6E-19 131.0 6.5 116 19-139 519-634 (635)
41 1v9y_A Heme PAS sensor protein 99.5 2.8E-13 9.7E-18 102.3 11.0 122 16-143 38-163 (167)
42 3d72_A Vivid PAS protein VVD; 99.5 1.6E-12 5.5E-17 96.5 13.3 106 22-132 30-149 (149)
43 3mfx_A Sensory BOX/ggdef famil 99.4 1.8E-12 6.1E-17 94.0 11.8 112 17-135 6-124 (129)
44 3fc7_A HTR-like protein, senso 99.4 3.8E-13 1.3E-17 96.5 8.2 108 16-134 17-125 (125)
45 3vol_A Aerotaxis transducer AE 99.4 2.1E-12 7.1E-17 103.7 13.3 110 16-139 20-141 (233)
46 3fg8_A Uncharacterized protein 99.4 2.5E-12 8.6E-17 91.7 9.4 107 18-136 12-118 (118)
47 2qkp_A Uncharacterized protein 99.4 9.5E-12 3.2E-16 92.6 12.3 118 17-141 18-138 (151)
48 4hi4_A Aerotaxis transducer AE 99.4 1.8E-11 6.2E-16 87.6 13.1 106 17-136 4-121 (121)
49 2gj3_A Nitrogen fixation regul 99.4 2.7E-12 9.1E-17 91.7 8.6 74 240-316 4-77 (120)
50 1n9l_A PHOT-LOV1, putative blu 99.3 2.2E-12 7.5E-17 90.6 7.3 67 250-316 2-68 (109)
51 4dj3_A Period circadian protei 99.3 4.5E-11 1.6E-15 99.4 16.1 58 253-313 176-233 (317)
52 4f3l_A Mclock, circadian locom 99.3 2.2E-12 7.5E-17 110.4 8.4 108 28-139 251-359 (361)
53 2vlg_A Sporulation kinase A; h 99.3 6.6E-12 2.2E-16 88.3 9.0 90 22-117 3-92 (111)
54 4f3l_B BMAL1B; BHLH, PAS, circ 99.3 6.6E-12 2.2E-16 108.3 9.8 108 28-138 278-386 (387)
55 3gdi_A Period circadian protei 99.3 3.1E-11 1.1E-15 100.2 13.4 58 253-313 167-224 (309)
56 4dj2_A Period circadian protei 99.3 1.7E-11 6E-16 102.1 11.4 57 252-311 177-233 (320)
57 2pr5_A Blue-light photorecepto 99.3 6E-12 2.1E-16 91.5 7.4 72 245-316 3-74 (132)
58 3b33_A Sensor protein; structu 99.2 1.2E-10 4.1E-15 82.1 11.5 106 20-134 9-115 (115)
59 2r78_A Sensor protein; sensory 99.2 2.6E-11 8.9E-16 86.2 6.6 74 238-315 8-81 (117)
60 1d06_A Nitrogen fixation regul 99.2 2.3E-11 8E-16 88.1 5.3 68 241-311 16-83 (130)
61 3cax_A Uncharacterized protein 99.1 3.6E-10 1.2E-14 96.8 12.3 115 16-140 237-351 (369)
62 3f1p_B ARYL hydrocarbon recept 99.1 6.8E-11 2.3E-15 84.4 5.6 65 244-311 5-69 (121)
63 4hia_A LOV protein; PAS, HTH, 99.1 1.4E-10 4.6E-15 88.6 7.4 76 241-316 7-82 (176)
64 3p7n_A Sensor histidine kinase 99.1 2.6E-10 8.8E-15 93.0 9.0 78 239-316 61-138 (258)
65 3mxq_A Sensor protein; PSI2, M 99.1 6E-11 2.1E-15 88.2 3.9 68 243-314 24-91 (152)
66 3fg8_A Uncharacterized protein 99.1 5.2E-11 1.8E-15 84.8 3.2 72 242-316 13-84 (118)
67 4eet_B Phototropin-2; LOV, blu 99.1 4.1E-10 1.4E-14 78.8 7.3 71 246-316 2-72 (115)
68 3rty_A Period circadian protei 99.0 1.4E-09 4.8E-14 91.4 11.4 108 28-138 154-266 (339)
69 3ue6_A Aureochrome1; PAS/LOV d 99.0 4.8E-10 1.6E-14 84.4 7.8 81 236-316 30-110 (166)
70 3a0r_A Sensor protein; four he 99.0 2.6E-10 8.8E-15 97.2 6.5 117 16-143 6-123 (349)
71 3mfx_A Sensory BOX/ggdef famil 99.0 1.1E-10 3.7E-15 84.5 3.1 57 241-300 7-63 (129)
72 3f1p_A Endothelial PAS domain- 99.0 2.2E-10 7.4E-15 81.1 4.4 63 250-315 8-70 (117)
73 2w0n_A Sensor protein DCUS; si 99.0 1.8E-10 6.1E-15 81.3 4.0 104 15-134 12-118 (118)
74 1ll8_A PAS kinase; PAS domain, 99.0 4.2E-10 1.4E-14 79.3 5.8 103 26-134 6-113 (114)
75 2kdk_A ARYL hydrocarbon recept 99.0 3E-10 1E-14 80.8 5.1 67 244-313 6-72 (121)
76 2vlg_A Sporulation kinase A; h 99.0 1.7E-10 5.7E-15 81.1 3.6 58 245-305 3-60 (111)
77 3a0s_A Sensor protein; PAS-fol 99.0 8.7E-09 3E-13 69.0 12.2 95 27-132 1-96 (96)
78 1mzu_A PPR; photoactive yellow 99.0 7.9E-09 2.7E-13 73.0 12.0 100 21-127 25-126 (129)
79 2jhe_A Transcription regulator 99.0 1.1E-09 3.8E-14 84.7 8.2 108 15-138 77-190 (190)
80 1nwz_A PYP, photoactive yellow 99.0 1.4E-08 4.9E-13 71.6 13.0 100 21-127 20-121 (125)
81 3luq_A Sensor protein; PAS, hi 99.0 1.3E-09 4.5E-14 76.1 7.5 68 240-311 2-69 (114)
82 3t50_A Blue-light-activated hi 99.0 9.7E-10 3.3E-14 78.8 6.8 71 246-316 2-72 (128)
83 2vv6_A FIXL, sensor protein FI 99.0 6.3E-10 2.2E-14 79.0 5.2 58 250-310 2-59 (119)
84 3mqq_A Transcriptional regulat 99.0 4.7E-10 1.6E-14 79.8 4.3 70 242-315 4-74 (120)
85 3bwl_A Sensor protein; structu 98.9 1.4E-09 4.9E-14 77.8 5.4 50 242-294 18-69 (126)
86 4dj3_A Period circadian protei 98.9 2.1E-08 7.1E-13 83.4 12.9 106 29-137 175-283 (317)
87 3fc7_A HTR-like protein, senso 98.9 8.6E-10 2.9E-14 78.6 3.8 71 240-313 18-88 (125)
88 1nwz_A PYP, photoactive yellow 98.9 2.2E-09 7.4E-14 75.8 5.3 66 245-313 21-87 (125)
89 1mzu_A PPR; photoactive yellow 98.9 2.4E-09 8.2E-14 75.7 5.0 65 246-313 27-92 (129)
90 2wkq_A NPH1-1, RAS-related C3 98.9 4.1E-09 1.4E-13 89.1 7.4 73 244-316 14-86 (332)
91 3olo_A Two-component sensor hi 98.9 2.3E-09 7.8E-14 75.5 4.9 50 243-295 15-64 (118)
92 3lyx_A Sensory BOX/ggdef domai 98.8 5.9E-09 2E-13 73.4 7.0 73 241-316 7-79 (124)
93 2z6d_A Phototropin-2; PAS-fold 98.8 8.6E-09 2.9E-13 73.1 7.6 73 240-315 5-80 (130)
94 3k3c_A Protein RV1364C/MT1410; 98.8 3.6E-09 1.2E-13 79.0 4.8 70 241-315 17-87 (158)
95 3gdi_A Period circadian protei 98.8 4.8E-08 1.6E-12 81.0 11.9 105 30-137 167-273 (309)
96 3nja_A Probable ggdef family p 98.8 4.7E-09 1.6E-13 74.4 4.9 74 239-315 5-80 (125)
97 3mr0_A Sensory box histidine k 98.8 1.3E-08 4.5E-13 74.6 7.3 77 237-316 5-83 (142)
98 4dj2_A Period circadian protei 98.8 3.5E-08 1.2E-12 82.2 10.2 107 29-138 177-285 (320)
99 2v0u_A NPH1-1, LOV2; kinase, t 98.8 1.2E-08 4E-13 74.1 6.6 70 243-315 4-76 (146)
100 1ll8_A PAS kinase; PAS domain, 98.8 8.8E-09 3E-13 72.4 5.6 46 250-298 7-53 (114)
101 3d72_A Vivid PAS protein VVD; 98.8 1.2E-08 4.3E-13 75.1 6.4 70 246-316 31-111 (149)
102 3mjq_A Uncharacterized protein 98.8 3.9E-09 1.3E-13 75.2 3.4 67 244-313 2-68 (126)
103 3kx0_X Uncharacterized protein 98.8 7.5E-09 2.6E-13 79.7 5.1 71 240-315 36-107 (185)
104 3sw1_A Sensory box protein; li 98.7 1.5E-08 5.1E-13 75.8 5.3 77 240-316 24-100 (162)
105 3b33_A Sensor protein; structu 98.7 8.8E-09 3E-13 72.4 3.6 66 244-314 10-75 (115)
106 4hi4_A Aerotaxis transducer AE 98.7 2.2E-08 7.6E-13 71.2 5.4 51 241-294 5-67 (121)
107 3icy_A Sensor protein; sensory 98.7 4.1E-09 1.4E-13 74.2 1.3 74 240-316 3-78 (118)
108 1byw_A Protein (human ERG pota 98.7 5.8E-08 2E-12 66.5 7.2 64 252-315 2-67 (110)
109 3a0s_A Sensor protein; PAS-fol 98.6 6.1E-08 2.1E-12 64.7 6.3 60 250-315 1-60 (96)
110 2l0w_A Potassium voltage-gated 98.6 1E-07 3.4E-12 68.4 7.9 71 242-315 20-95 (138)
111 3eeh_A Putative light and redo 98.6 1.6E-08 5.6E-13 71.3 3.5 75 237-315 7-84 (125)
112 2w0n_A Sensor protein DCUS; si 98.6 4.6E-08 1.6E-12 68.5 4.8 52 241-295 15-69 (118)
113 3vol_A Aerotaxis transducer AE 98.5 1.6E-07 5.4E-12 75.1 6.9 63 241-309 22-96 (233)
114 1v9y_A Heme PAS sensor protein 98.5 1.5E-07 5E-12 70.4 6.4 70 240-312 39-108 (167)
115 2qkp_A Uncharacterized protein 98.5 5.6E-08 1.9E-12 72.0 3.3 70 241-315 19-91 (151)
116 3a0r_A Sensor protein; four he 98.4 1.4E-07 4.6E-12 80.2 4.9 69 241-315 8-76 (349)
117 2ykf_A Pdtas, probable sensor 97.8 3.1E-08 1.1E-12 82.4 0.0 113 23-146 175-296 (305)
118 2jhe_A Transcription regulator 98.4 4.8E-07 1.7E-11 69.7 5.9 54 241-297 80-133 (190)
119 3h9w_A Diguanylate cyclase wit 98.4 1.1E-07 3.9E-12 66.6 2.0 65 250-316 2-67 (115)
120 2ykf_A Pdtas, probable sensor 97.5 1.7E-07 5.9E-12 77.9 0.0 46 246-295 175-223 (305)
121 4eho_A Bacteriophytochrome, PA 98.1 2.8E-06 9.6E-11 77.9 6.4 71 242-316 519-589 (635)
122 3cax_A Uncharacterized protein 98.0 3.3E-06 1.1E-10 72.2 4.2 72 238-315 236-307 (369)
123 1oj5_A Steroid receptor coacti 97.7 9.5E-05 3.2E-09 51.9 6.9 102 30-135 9-114 (132)
124 1oj5_A Steroid receptor coacti 95.3 0.0081 2.8E-07 42.2 2.1 56 256-315 12-71 (132)
125 2ool_A Sensor protein; bacteri 94.5 0.025 8.6E-07 47.1 3.6 55 251-311 41-96 (337)
126 2ool_A Sensor protein; bacteri 90.7 0.41 1.4E-05 39.8 5.7 40 32-73 46-85 (337)
127 4ew7_A Conjugative transfer: r 89.3 1.2 4.1E-05 29.3 5.7 34 243-279 22-55 (127)
128 4ew7_A Conjugative transfer: r 85.8 5.7 0.0002 26.1 11.4 91 19-117 21-112 (127)
129 4e04_A Bacteriophytochrome (li 81.5 1.8 6.2E-05 35.7 4.7 53 252-311 29-82 (327)
130 3s7o_A Bacteriophytochrome; bi 80.1 0.89 3E-05 37.8 2.4 42 252-295 52-94 (343)
131 4e04_A Bacteriophytochrome (li 76.7 10 0.00035 31.2 7.8 51 31-88 32-82 (327)
132 4dah_A Sporulation kinase D; a 69.9 33 0.0011 25.8 12.1 94 17-136 57-152 (217)
133 3zq5_A Phytochrome-like protei 65.6 2 7E-05 38.0 1.3 43 252-296 29-72 (520)
134 2hje_A Autoinducer 2 sensor ki 56.7 64 0.0022 24.7 9.7 87 24-135 58-144 (221)
135 3s7o_A Bacteriophytochrome; bi 54.8 10 0.00034 31.5 3.5 40 31-72 55-94 (343)
136 3c38_A Autoinducer 2 sensor ki 48.9 98 0.0034 24.5 9.1 88 24-136 77-164 (270)
137 3pxp_A Helix-turn-helix domain 48.0 27 0.00093 28.2 5.0 38 238-278 96-133 (292)
138 3nhq_A Bacteriophytochrome; ph 42.5 27 0.00094 30.7 4.5 51 252-311 26-78 (505)
139 1p0z_A Sensor kinase CITA; tra 39.9 87 0.003 21.3 8.8 25 110-135 103-127 (131)
140 3zq5_A Phytochrome-like protei 36.6 15 0.00052 32.5 2.0 41 31-73 32-72 (520)
141 3clo_A Transcriptional regulat 33.2 18 0.00062 28.5 1.8 32 251-284 43-74 (258)
142 3pxp_A Helix-turn-helix domain 30.9 56 0.0019 26.4 4.3 36 17-55 98-133 (292)
143 3nhq_A Bacteriophytochrome; ph 29.5 79 0.0027 27.8 5.3 36 31-71 29-65 (505)
144 3lif_A Putative diguanylate cy 27.0 2.1E+02 0.0071 21.7 10.4 95 16-136 56-154 (254)
145 3e4o_A C4-dicarboxylate transp 22.6 3E+02 0.01 22.1 12.2 96 18-138 102-198 (305)
No 1
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.97 E-value=2.7e-28 Score=196.58 Aligned_cols=182 Identities=21% Similarity=0.405 Sum_probs=162.1
Q ss_pred EEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEEEEEE
Q 021027 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFWMLF 110 (318)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 110 (318)
|+++|.+ |+++++|+++++++||++++++|++...+.++.........++..+..+..+..+....+++|..+|+.+
T Consensus 2 i~i~D~~---g~i~~~N~a~~~l~Gy~~~el~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~dG~~~~~~~ 78 (227)
T 3ewk_A 2 VSITDLQ---GRILYANDNFCAVSRYGREELVGQDHRIVNSGYHGKAYIRDMWRTISRGNIWQGEFCNRRKDGTRYWVDS 78 (227)
T ss_dssp EEEEETT---CBEEEECHHHHHHTTCCHHHHTTSBGGGGCCSCSCHHHHHHHHHHHTTTCCEEEEEEEECSSSCEEEEEE
T ss_pred EEEECCC---CcEEehHHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCeEEEEEEEEcCCCCEEeeee
Confidence 6789999 9999999999999999999999999887777666667777778888888899999999999999999999
Q ss_pred EEEeeccCCCCceeEEEEEEeccccccccccccccccccCCCCchhhHhhhccccccccccchhccccccccCCCCCcCc
Q 021027 111 KMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSYSEDGGGSRLREIVFGSCRREVCSDSLLDLDRVLALDSDDTGLEI 190 (318)
Q Consensus 111 ~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (318)
+..|+++ .+|.+.+++++.+|||++|++
T Consensus 79 ~~~p~~d-~~g~~~~~~~~~~DIT~~k~~--------------------------------------------------- 106 (227)
T 3ewk_A 79 TIVPLMD-NAGKPRQYISIRRDITAQKEA--------------------------------------------------- 106 (227)
T ss_dssp EEEEEEC-SSSCEEEEEEEEEECTTTTHH---------------------------------------------------
T ss_pred EEEEEEc-CCCCEEEEEEEEEehhhHHHH---------------------------------------------------
Confidence 9999999 899999999999999999997
Q ss_pred ccchhhhhHHHHHHHhhhhhhhhhccccccccceeeeeeecCCCCccccchhHHHHHhccCCcEEEecCCCCCCCeeEec
Q 021027 191 EDSCEASDLEKRKAATAIDNILSVLTHYSQLTGRLVCGKRCSLPGMGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYAS 270 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N 270 (318)
+.+.+. +..++++++++|+++|.+| +|+++|
T Consensus 107 -------e~~l~~---------------------------------------~~~~~~~~~~~i~~~d~~g---~i~~~N 137 (227)
T 3ewk_A 107 -------EAQLAR---------------------------------------LKQAMDANSEMILLTDRAG---RIIYAN 137 (227)
T ss_dssp -------HHHHHH---------------------------------------HHHHHHTCCSEEEEECTTS---CEEEEC
T ss_pred -------HHHHHH---------------------------------------HHHHHhcCcCeEEEEcCCC---cEEEEc
Confidence 211111 3345677899999999887 999999
Q ss_pred HHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 271 DAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 271 ~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
++|++++||+++|++|+++..+.+|.+.+.....+++++..+++|.
T Consensus 138 ~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 183 (227)
T 3ewk_A 138 PALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWS 183 (227)
T ss_dssp HHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEE
T ss_pred hHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCcee
Confidence 9999999999999999999999999999999999999999998875
No 2
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.82 E-value=6.9e-19 Score=126.63 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=105.6
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEE
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (318)
..++++.++++++++++++|.+ |+++++|++|++++||+.++++|++...+.++.........+...+..+..+..+
T Consensus 3 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e 79 (120)
T 2gj3_A 3 LPEIFRQTVEHAPIAISITDLK---ANILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWSGV 79 (120)
T ss_dssp CHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHhCCCeEEEECCC---CCEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEEEE
Confidence 3457889999999999999999 9999999999999999999999998887777666665666777778888888888
Q ss_pred EEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccc
Q 021027 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (318)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k 137 (318)
...++++|..+|+.++..|+++ .+|.+.+++++++|||++|
T Consensus 80 ~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~v~~~~DITe~k 120 (120)
T 2gj3_A 80 LVNRRKDKTLYLAELTVAPVLN-EAGETIYYLGMHRDTSELH 120 (120)
T ss_dssp EEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCSCC
T ss_pred EEEEcCCCCEEEEEEEEEEEEC-CCCCEEEEEEEeccCcccC
Confidence 8889999999999999999998 8999999999999999986
No 3
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.78 E-value=9e-18 Score=129.11 Aligned_cols=127 Identities=25% Similarity=0.413 Sum_probs=114.3
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
+..++++.++++++++++++|.+.++|+++++|+++++++||++++++|+++..+.++.........+...+..+.++..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (176)
T 4hia_A 4 KQFEKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQV 83 (176)
T ss_dssp HHHHHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEE
T ss_pred HHHHHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceEE
Confidence 34467889999999999999986666999999999999999999999999988888888877778888888888888888
Q ss_pred EEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccccc
Q 021027 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (318)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~ 142 (318)
+....+++|..+|+.++..|+.+ .+|.+.+++++++|||++|++|++
T Consensus 84 e~~~~~~dG~~~~~~~~~~pi~~-~~g~~~~~~~~~~DITe~k~~e~~ 130 (176)
T 4hia_A 84 VLRNYRANDEPFDNLLFLHPVGG-RPDAPDYFLGSQFELGRSGNSEEA 130 (176)
T ss_dssp EEEEECTTCCEEEEEEEEEEESS-BTTBCSEEEEEEEEESSSGGGHHH
T ss_pred EEEEEcCCCCEEEEEEEEEEeeC-CCCCeEEEEEEEEECcHhhHHHHH
Confidence 88888999999999999999998 899999999999999999998544
No 4
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.76 E-value=8.5e-18 Score=120.95 Aligned_cols=115 Identities=10% Similarity=0.128 Sum_probs=98.5
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHH-hcCCeEEEEEE
Q 021027 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR-EERPIEVNLLN 98 (318)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 98 (318)
...+++++++.++++|.+ |+++|+|+++++++||++++++|+++..+++|++.......+...+. .+..+..++++
T Consensus 4 ~~ll~e~~~d~i~~~d~~---g~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~~e~r~ 80 (121)
T 3f1p_B 4 KGLNVCQPTRFISRHNIE---GIFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKLKGQVLSVMFRF 80 (121)
T ss_dssp ----CCCCCEEEEEECTT---SBEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTSTTCCEEEEEEE
T ss_pred ccceecCCCceEEEECCC---ceEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhcCCCcccEEEEE
Confidence 446889999999999999 99999999999999999999999998888898887777777777664 45568889999
Q ss_pred EecCCcEEEEEEEEEeeccCC-CCceeEEEEEEeccccccc
Q 021027 99 YKKDGTPFWMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~-~g~~~~~i~~~~DIte~k~ 138 (318)
++++|..+|+..+..|+.+ . +|.+.+++++.+|||++|+
T Consensus 81 ~~~dG~~~w~~~~~~~~~~-~~~g~~~~iv~~~~DIT~~kq 120 (121)
T 3f1p_B 81 RSKNQEWLWMRTSSFTFQN-PYSDEIEYIICTNTNVKNSSQ 120 (121)
T ss_dssp ECTTSCEEEEEEEEEEECC-TTCCCCCEEEEEEEECCCC--
T ss_pred EecCCCEEEEEEEEEEEEC-CCCCceeEEEEEeEEcccccC
Confidence 9999999999999999987 5 7889999999999999986
No 5
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.75 E-value=5.2e-17 Score=114.66 Aligned_cols=108 Identities=41% Similarity=0.805 Sum_probs=96.1
Q ss_pred CCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEE
Q 021027 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (318)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (318)
++++++++|...++++++++|++|++++||+.++++|++...+.++.........++..+..+.++..++..++++|..+
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~kdG~~~ 81 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACSVRLLNYRKDGTPF 81 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECTTSCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEEEEEEEEcCCCCEE
Confidence 57899999953333999999999999999999999999987777777666667788888889999999999999999999
Q ss_pred EEEEEEEeeccCCCCceeEEEEEEecccc
Q 021027 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (318)
Q Consensus 107 ~~~~~~~~i~~~~~g~~~~~i~~~~DIte 135 (318)
|+.+++.|+++ ++|.+.+++++.+|||+
T Consensus 82 ~~~~~~~pi~d-~~G~~~~~v~~~~DITe 109 (109)
T 1n9l_A 82 WNLLTVTPIKT-PDGRVSKFVGVQVDVTS 109 (109)
T ss_dssp EEEEEEEEEEC-TTSCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEC-CCCCEEEEEEEEEeCCC
Confidence 99999999999 89999999999999996
No 6
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.75 E-value=6e-17 Score=118.44 Aligned_cols=116 Identities=37% Similarity=0.687 Sum_probs=97.4
Q ss_pred HHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEec
Q 021027 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (318)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (318)
.++++++++++++|.+.++++++++|+++++++||+.++++|+++..+.++.........+...+..+.++..+...+++
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~k 82 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVTVQIQNYKK 82 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEEEEEEEECT
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeEEEEEEEec
Confidence 57899999999999871123999999999999999999999998877777766666666777778888888888888899
Q ss_pred CCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccc
Q 021027 102 DGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (318)
Q Consensus 102 ~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~ 140 (318)
+|..+|+.++..|+.+ .+ +.+++++++|||++|++|
T Consensus 83 dG~~~~~~~~~~~~~~-~~--~~~~~~~~~DITe~k~~e 118 (132)
T 2pr5_A 83 DGTMFWNELNIDPMEI-ED--KTYFVGIQNDITKQKEYE 118 (132)
T ss_dssp TSCEEEEEEEEEEEEE-TT--EEEEEEEEEECHHHHHHH
T ss_pred CCCeeeeEEEEEeccC-CC--eeEEEEEEEeCcHHHHHH
Confidence 9999999999999987 43 788999999999999983
No 7
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.74 E-value=1.8e-16 Score=129.77 Aligned_cols=121 Identities=30% Similarity=0.586 Sum_probs=106.3
Q ss_pred hhHHHHHHHHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC
Q 021027 15 RYTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (318)
...++++.++++++++++++|. + |+++++|+++++++||++++++|+++..+.++.........+...+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~i~~~d~~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 136 (258)
T 3p7n_A 60 PPAQWVLDLIEASPIASVVSDPRLAD---NPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKP 136 (258)
T ss_dssp -CCHHHHHHHHTCSSEEEEECTTSTT---CCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHhcCCccEEEEcCCCCC---CcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCC
Confidence 3456889999999999999999 7 899999999999999999999999988888888888888888888888999
Q ss_pred eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
+..+....+++|..+|+.+...|+.+ .+|.+.+++++++|||++|..
T Consensus 137 ~~~e~~~~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITerk~~ 183 (258)
T 3p7n_A 137 VLVEILNYKKDGTPFRNAVLVAPIYD-DDDELLYFLGSQVEVDDDQPN 183 (258)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEEEC-TTSCSEEEEEEEEEC------
T ss_pred eEEEEEEEcCCCCEEEEeeEEEEEEc-CCCCEEEEEEEeeecchhhhh
Confidence 99999889999999999999999998 899999999999999999543
No 8
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.73 E-value=6.1e-17 Score=122.91 Aligned_cols=120 Identities=39% Similarity=0.656 Sum_probs=109.7
Q ss_pred hHHHHHHHHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 16 YTLWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
....+..++++++++++++|. + ++++++|+++++++|++.++++|+++..+.++.........+...+..+..+
T Consensus 33 ~~~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 33 PDYSLVKALQMAQQNFVITDASLPD---NPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp CCCHHHHHHHHTTSCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHhcCCceEEEEEccCCC---CcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 446788999999999999999 7 9999999999999999999999999888888877777777888888888888
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
..+....+++|..+|+.+...|+.+ .+|.+.+++++++|||++|++
T Consensus 110 ~~e~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~ 155 (166)
T 3ue6_A 110 SVCLLNYRQDGTTFWNLFFVAGLRD-SKGNIVNYVGVQSKVSEDYAK 155 (166)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEECCBCCHHHHH
T ss_pred EEEEEEEcCCCCEEEEEEEEEeeeC-CCCCEEEEEEEEEechHHHHH
Confidence 8888888999999999999999998 889999999999999999986
No 9
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=99.72 E-value=1.5e-16 Score=117.98 Aligned_cols=122 Identities=14% Similarity=0.213 Sum_probs=105.9
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCC--CCCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGR--NGRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
..+++|+.+++.++.++|.+|.. +..+++|+++..++||+++++.+. .+..+++|++...+...+...+..+.++
T Consensus 6 ~se~rl~~~~~~~~~g~w~~d~~---~~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~~ 82 (142)
T 3mr0_A 6 ASEERFQLAVSGASAGLWDWNPK---TGAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDTY 82 (142)
T ss_dssp ---CCHHHHHHHTTCEEEEECTT---TCCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCCE
T ss_pred HHHHHHHHHHHhCCcEEEEEEcC---CCeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCce
Confidence 34557888999999999999999 999999999999999999988763 3556778888888888888888888889
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~ 140 (318)
..++++.+++|..+|+.....|+.+ .+|.+.+++|++.|||++|++|
T Consensus 83 ~~e~r~~~~~G~~~w~~~~~~~~~d-~~g~~~~~~G~~~DITerk~~E 129 (142)
T 3mr0_A 83 DVEYRVRTRSGDFRWIQSRGQALWN-SAGEPYRMVGWIMDVTDRKRDE 129 (142)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHH
T ss_pred EEEEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEcCchHHHHH
Confidence 9999999999999999999999998 8999999999999999999983
No 10
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=99.72 E-value=1.1e-16 Score=116.05 Aligned_cols=117 Identities=38% Similarity=0.664 Sum_probs=102.8
Q ss_pred HHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEE
Q 021027 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (318)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (318)
++++++++++++|. + ++++++|++++.++|++.++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 78 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPD---NPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPIDIDIINY 78 (128)
T ss_dssp CCCCCSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCcccEEEecCCCCC---CcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCceeEEEEE
Confidence 46789999999999 7 99999999999999999999999998888877777777778888888888888888888
Q ss_pred ecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 100 ~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
.++|..+|+.++..|+.+ .+|.+.+++++++|||++|+++++.
T Consensus 79 ~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DITe~k~~e~~~ 121 (128)
T 3t50_A 79 KKSGEAFWNRLHISPVHN-ANGRLQHFVSSQLDVTLELVPRGSL 121 (128)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHC-----
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEEcchhhhhhhhh
Confidence 999999999999999998 8899999999999999999985443
No 11
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.72 E-value=4.3e-17 Score=116.45 Aligned_cols=108 Identities=8% Similarity=0.170 Sum_probs=97.4
Q ss_pred CCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEE
Q 021027 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (318)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (318)
+++.++++|.+ |+++++|+++++++||++++++|+++..+++|++.......+...+..+..+..++++++++|..+
T Consensus 8 ~~~~i~~~d~~---g~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~~~ 84 (117)
T 3f1p_A 8 SKTFLSEHSMD---MKFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVVSGQYRMLAKHGGYV 84 (117)
T ss_dssp GGEEEEEECTT---CBEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEECCCEEEECTTSSEE
T ss_pred CccEEEEECCC---ceEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCeeeeEEEEEecCCCEE
Confidence 45778899999 999999999999999999999999988888888877777778888887777777888899999999
Q ss_pred EEEEEEEeeccCC-CCceeEEEEEEeccccccc
Q 021027 107 WMLFKMSLVFGKE-DGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 107 ~~~~~~~~i~~~~-~g~~~~~i~~~~DIte~k~ 138 (318)
|+.++..|+.+ + +|.+.+++++.+|||++|+
T Consensus 85 w~~~~~~~~~d-~~~g~~~~iv~~~~DITer~~ 116 (117)
T 3f1p_A 85 WLETQGTVIYN-PRNLQPQCIMCVNYVLSEIEK 116 (117)
T ss_dssp EEEEEEEEEEE-TTTTEEEEEEEEEEECSCCBC
T ss_pred EEEEeeEEEEC-CCCCCceEEEEEeeecccccc
Confidence 99999999998 6 7889999999999999987
No 12
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.71 E-value=5.9e-16 Score=109.45 Aligned_cols=111 Identities=41% Similarity=0.778 Sum_probs=99.1
Q ss_pred HHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEE
Q 021027 23 ALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNY 99 (318)
Q Consensus 23 ~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (318)
.+++++++++++|. + ++++++|+++++++|++.++++|+++..+.++.........+...+..+..+..+....
T Consensus 2 ~l~~~~~~i~~~d~~~~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPD---NPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETTVQLINY 78 (115)
T ss_dssp ---CCCCSEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccccCCCcEEEEcCCCCC---CcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcceEEEEe
Confidence 47889999999999 8 99999999999999999999999998888877777777777888888888888888888
Q ss_pred ecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccc
Q 021027 100 KKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (318)
Q Consensus 100 ~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k 137 (318)
+++|..+|+.++..|+.+ .+|.+.+++++++|||+++
T Consensus 79 ~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DITer~ 115 (115)
T 4eet_B 79 TKSGKKFWNLLHLQPVRD-QKGELQYFIGVQLDGSDHV 115 (115)
T ss_dssp CTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECSCCC
T ss_pred cCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEeecccC
Confidence 999999999999999998 8899999999999999975
No 13
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=99.69 E-value=1.8e-16 Score=113.72 Aligned_cols=114 Identities=12% Similarity=0.109 Sum_probs=91.4
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCC-hHHHHHHHHHHHhcCCeEEEEEE
Q 021027 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTN-RRTIMEIREAIREERPIEVNLLN 98 (318)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 98 (318)
|+.++++++++++ ++.+ ++++++|+++++++||++++++|+++..+++++.. ......+...+..+..+..+...
T Consensus 5 ~~~~~~~~~~~i~-~~~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 80 (120)
T 3mqq_A 5 YKTAFHLAPIGLV-LSRD---RVIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSYADDRIM 80 (120)
T ss_dssp HHHHHHHCSSEEE-EEET---TEEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred HHHHHhcCCceEE-EecC---CEEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcceEEEEE
Confidence 6789999999996 4778 99999999999999999999999987777655322 33444555666777788888888
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
.+++|..+|+.++..|+. .++...+++++++|||++|++
T Consensus 81 ~~~dG~~~~~~~~~~~~~--~~~~~~~~v~~~~DITerk~~ 119 (120)
T 3mqq_A 81 KRAGGELFWCHVTGRALD--RTAPLAAGVWTFEDLSATRRV 119 (120)
T ss_dssp ECTTSCEEEEEEEEEESS--TTSTTSSEEEEEEESCC----
T ss_pred EeCCCCEEEEEEEEEECC--CCCCceeEEEEEEcccHhhcc
Confidence 999999999999999994 466677889999999999985
No 14
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=99.69 E-value=1.4e-15 Score=108.39 Aligned_cols=120 Identities=20% Similarity=0.261 Sum_probs=104.6
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
.....++.++++++++++++|.+ +.++++|++++.++|++.++++|.+...+.++.........+...+..+..+..
T Consensus 4 ~~~~~~~~~~~~~~~~i~~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (124)
T 3lyx_A 4 DILKQRAKAFDYVFDAIVVTDLQ---GFIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWTG 80 (124)
T ss_dssp CHHHHHHHGGGTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEEE
T ss_pred hHHHHHHHHHhhcCceEEEECCC---CcEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCcccc
Confidence 34567889999999999999999 999999999999999999999999877666666555566667778888888888
Q ss_pred EEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
+......+|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~ 123 (124)
T 3lyx_A 81 EIRMLHKDGHIGWIESMCVPIYG-ENYQMVGALGINRDITKRKK 123 (124)
T ss_dssp EEEEECTTSCEEEEEEEEEEEEC-STTCEEEEEEEEEECSCC--
T ss_pred eEEEEccCCCEEEEEEEEEEEEC-CCCCEEEEEEEEecchhhhc
Confidence 88888999999999999999998 78999999999999999986
No 15
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=99.69 E-value=2.8e-16 Score=112.93 Aligned_cols=120 Identities=14% Similarity=0.090 Sum_probs=92.8
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcC--CCCCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIG--RNGRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
..+++++.+++.++.+++++|.+ +.++++|++++.++|++++++.| ..+..+.+|++...+...+...+..+.++
T Consensus 4 ~~~~~l~~~~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 4 MAEKLLHTAESDAGIGSWVLHME---SGRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp -------------CCEEEEEETT---TTEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHHhCCeeEEEEEcC---CCcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 34567888999999999999999 99999999999999999999988 33445667777777777777888888888
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
..+++..+++|..+|+.+...|+.+ .+|.+.+++++++|||++|+
T Consensus 81 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~g~~~DITe~k~ 125 (125)
T 3nja_A 81 DVEYRIVRPDGQVRELLERNHIQRQ-ASGQVDHLWGTVIDMTEHKQ 125 (125)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCC---
T ss_pred eEEEEEECCCCCEEEEEEeeEEEEC-CCCCEEEEEEEEEecccccC
Confidence 8888888999999999999999998 89999999999999999985
No 16
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=99.67 E-value=3.4e-15 Score=107.24 Aligned_cols=121 Identities=37% Similarity=0.725 Sum_probs=103.9
Q ss_pred hHHHHHHHHhcCCCeEEEEc---CCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 16 YTLWVHEALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
....++.++++++++++++| .+ +.++++|++++.++|++.++++|+++..+.++.........+...+..+..+
T Consensus 4 ~~~~~~~~~~~~~~~i~~~d~~d~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 4 VSQELKTALSTLQQTFVVSDATQPH---CPIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp ---CHHHHHHHTTCEEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcccceeeeeccCCC---CcEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 44567889999999999999 88 9999999999999999999999999888877777777677777778888888
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~ 140 (318)
..+......+|..+|+.+...|+.+ .+|.+.+++++++|||++++++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~e 127 (130)
T 2z6d_A 81 CGRLLNYKKDGTPFWNLLTVTPIKD-DQGNTIKFIGMQVEVSKYTEGV 127 (130)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEECCTTC---
T ss_pred eeEEEEEcCCCcEEEEEEEEEEEEC-CCCCeeEEEEEEecchHHHHhh
Confidence 8888888899999999999999998 7899999999999999999873
No 17
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.66 E-value=2.1e-15 Score=109.85 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=93.8
Q ss_pred hhhhHHHhhhhhhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHH
Q 021027 4 QLGLIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (318)
Q Consensus 4 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (318)
++...++.+. +.+.+++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++.........+.
T Consensus 3 ~~~~~e~~l~-~~~~~~~~l~~~~~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~ 78 (130)
T 1d06_A 3 HMLETEDVVR-ARDAHLRSILDTVPDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQ 78 (130)
T ss_dssp HHHHHHHHHH-HHTSCHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHHhhCcCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHH
Confidence 3445555555 45567889999999999999999 9999999999999999999999998877776654333333333
Q ss_pred HHHHhcCC----eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 84 EAIREERP----IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 84 ~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
.....+.. ...+...+++||..+|+.++..|+.+ . ...+++++++|||
T Consensus 79 ~~~~~~~~~~~~~~~e~~~~~kdG~~~~~~~~~~~~~~-~--~~~~~~~~~~DIT 130 (130)
T 1d06_A 79 RYMATGEKRIIGIDRVVSGQRKDGSTFPMKLAVGEMRS-G--GERFFTGFIRDLT 130 (130)
T ss_dssp HHHHHCCCSSTTSCEEEEEECTTSCEEEEEEEEEEEEE-T--TEEEEEEEEEECC
T ss_pred HHHhcCCccccCCeeEEEEEeCCCCEEEEEEEEEEEEE-C--CeEEEEEEEEECc
Confidence 33333332 23456678999999999999999975 2 3346889999997
No 18
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.65 E-value=2.1e-15 Score=129.17 Aligned_cols=65 Identities=9% Similarity=0.109 Sum_probs=56.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (318)
.++...++++++..+++++.+ |+++|+|+++..++||++++++|+++.++.+|++...+...+..
T Consensus 85 ~~~~~~~l~a~~~~i~v~~~~---G~i~yvs~~~~~~lGy~~~el~g~~~~~~ihp~D~~~~~~~l~~ 149 (361)
T 4f3l_A 85 EEFTQLMLEALDGFFLAIMTD---GSIIYVSESVTSLLEHLPSDLVDQSIFNFIPEGEHSEVYKILST 149 (361)
T ss_dssp HHHHHHHHHHTTEEEEEEETT---SBEEEECTTHHHHHCCCHHHHTTSBGGGGSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHhcCceEEEEcCC---ccEEEEechhhhhcCCCHHHhcCCcHHHhcCHHHHHHHHHHhcc
Confidence 345566789999999999999 99999999999999999999999999999999887766655543
No 19
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=99.65 E-value=2.5e-15 Score=113.48 Aligned_cols=125 Identities=23% Similarity=0.427 Sum_probs=111.4
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCC---cEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGH---PIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~---~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (318)
...++++.+++.++++++++|.+ + +++++|++++.++|++.++++|+.+..+.++.........+...+..+..
T Consensus 22 ~~~~~~~~i~~~~~~~i~~~d~~---~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (162)
T 3sw1_A 22 INAQLLQSMVDASNDGIVVAEKE---GDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRP 98 (162)
T ss_dssp CCHHHHHHHHHTCSSEEEEEEEE---TTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCC
T ss_pred chHHHHHHHHhhccCcEEEEeCC---CCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCC
Confidence 35568899999999999999999 9 99999999999999999999999988887777777777778888888888
Q ss_pred eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
+..+......+|..+|+.+...|+.+ .+|.+.+++++++|||+++++++++
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~~i~~-~~g~~~~~~~~~~DiTe~k~~e~~l 149 (162)
T 3sw1_A 99 CREVLRNYRKDGSAFWNELSITPVKS-DFDQRTYFIGIQKDVSRQVELEREL 149 (162)
T ss_dssp EEEEEEEECTTCCEEEEEEEEEEEEC-SSSSCEEEEEEEEECHHHHHHHHHH
T ss_pred CcceEEEECCCCCEEEEEEEEEEeec-CCCCEEEEEEEEEeCcHHHHHHHHH
Confidence 88888888899999999999999998 7899999999999999999984443
No 20
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=99.64 E-value=9.1e-16 Score=109.16 Aligned_cols=110 Identities=9% Similarity=0.080 Sum_probs=94.3
Q ss_pred CCCeEEEEc-CCCCCCcEEEecHhHHHhcCCChhhhcCCC-CCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCc
Q 021027 27 LPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRN-GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGT 104 (318)
Q Consensus 27 ~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 104 (318)
+++++|.+| .. +++.|+|+++++++||+++++.+.. +..+++|++.......+...+..+.++..++++++++|.
T Consensus 2 a~~giw~~d~~~---~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~~e~r~~~~dG~ 78 (115)
T 3h9w_A 2 TKAIPWKINWQT---MAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHEADYRALHRDGH 78 (115)
T ss_dssp -CCEEEEEETTT---TEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEEEEEEEECTTSC
T ss_pred cceEEEEEEcCC---CcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCcccEEEEEEcCCCC
Confidence 468899999 45 8899999999999999999998832 345677877777777788888888888999999999999
Q ss_pred EEEEEEEEEeeccCCCCceeEEEEEEeccccccccc
Q 021027 105 PFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (318)
Q Consensus 105 ~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~ 140 (318)
.+|+.....|+++ ++|.+.+++++..|||++|.+|
T Consensus 79 ~~w~~~~~~~~~d-~~G~~~~~~G~~~Dit~~k~~~ 113 (115)
T 3h9w_A 79 YVWIRDVVHVVRD-DSGEVEALIGFMFDISLEHHHH 113 (115)
T ss_dssp EEEEEEEEEEEEC-TTSCEEEEEEEEEECGGGGC--
T ss_pred EEEEEEEEEEEEC-CCCCEEEEEEEEeccCcccccc
Confidence 9999999999998 8999999999999999999973
No 21
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=99.64 E-value=4e-15 Score=106.49 Aligned_cols=111 Identities=19% Similarity=0.231 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC----eEEEEEEEecC
Q 021027 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP----IEVNLLNYKKD 102 (318)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 102 (318)
++++++++|.+ |+++++|+++++++||++++++|+++..+.++.........+......+.. ...+....++|
T Consensus 2 ~~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 78 (119)
T 2vv6_A 2 IPDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRTTSDPHIIGIGRIVTGKRRD 78 (119)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHHCCCSSTTTCEEEEEECTT
T ss_pred CcceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhcCCCcccCCCceEEEEEeCC
Confidence 67899999999 999999999999999999999999887776654433323333333333332 23456678999
Q ss_pred CcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 103 g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
|..+|+.++..|+.+ . ...+++++++|||++|++|+++
T Consensus 79 G~~~~~~~~~~~~~~-~--~~~~~~~~~~DITerk~~e~~l 116 (119)
T 2vv6_A 79 GTTFPMHLSIGEMQS-G--GEPYFTGFVRDLTEHQQTQARL 116 (119)
T ss_dssp SCEEEEEEEEEEEEE-T--TEEEEEEEEEECC---------
T ss_pred CCEEEEEEEEEEEEE-C--CeEEEEEEEEEcHHHHHHHHHH
Confidence 999999999999976 3 3346889999999999985544
No 22
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.64 E-value=1.4e-14 Score=103.43 Aligned_cols=110 Identities=10% Similarity=0.123 Sum_probs=86.5
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
..+++|+.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++... .........+..+..+..
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 83 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEPLRE 83 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCCEEE
T ss_pred HhHHHHHHHHhcCCceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCcEEE
Confidence 45668899999999999999999 99999999999999999999999986665443322 222334445566667778
Q ss_pred EEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
+....+++|..+|+.++..|+.+ |. ++++++|||
T Consensus 84 e~~~~~kdG~~~~v~~~~~~~~~---g~---~~~i~~DIT 117 (117)
T 2r78_A 84 ERTVWTRNGDQLTVELSAHLLPD---GK---ILGIARDVS 117 (117)
T ss_dssp EEEEECTTSCEEEEEEEEEECTT---SC---EEEEEEC--
T ss_pred EEEEEecCCCEEEEEEEEEEecC---Ce---EEEEEEeCC
Confidence 88888999999999999999853 44 678889997
No 23
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.64 E-value=1.2e-15 Score=113.63 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=94.0
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
.....+..++++++++++++|.+ |+|+++|+++++++|+++++++|+++.+++++ ....+...+..++..|.+...
T Consensus 19 ~~~~~l~~il~~~~~gi~v~D~~---g~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~~~~ 94 (152)
T 3mxq_A 19 KSRLLLSELLDQLSFALCIVRND---YVIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESSSFS 94 (152)
T ss_dssp HHHHHHHHHHHHHCCEEEEEETT---SBEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHhcCCCCEEEEcCC---CEEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCceee
Confidence 45557789999999999999999 99999999999999999999999998888776 445555667788877765332
Q ss_pred EE---------E---EEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 95 NL---------L---NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 95 ~~---------~---~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
.+ . ...++|...|..++..|+.+ ++|.+.+++.++.|||+++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~Pl~d-~~G~v~gv~~ii~DVTe~~~a 150 (152)
T 3mxq_A 95 SWEQKPHLLPFKSSRPVSGEEEQMYQNLEVIPIHS-EDGTIEHVCLCVYDVTIQASQ 150 (152)
T ss_dssp ECCSSSCSSCC----------CCEEEEEEEEEEEC-TTSCEEEEEEEEEEEECC---
T ss_pred ecccccccccccccCCCCCCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEECCHHHhc
Confidence 11 1 12245677888999999999 899999999999999999876
No 24
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=99.62 E-value=7e-15 Score=103.72 Aligned_cols=111 Identities=16% Similarity=0.225 Sum_probs=90.0
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE-EE
Q 021027 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV-NL 96 (318)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 96 (318)
++++.++++++++++++|.+ ++++++|+++++++|+++++++|+++..++ |+........+...+. +..... ..
T Consensus 3 ~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (114)
T 3luq_A 3 ERLRLFTEHAPAALAMFDRE---MRYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLA-GEVIRVEED 77 (114)
T ss_dssp HHHHHHHHTCSSEEEEEETT---CBEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHT-TCCEEEEEE
T ss_pred HHHHHHHhcCCceEEEEcCC---cEEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhc-CCcceeeee
Confidence 46788999999999999999 999999999999999999999999877776 4444544444445444 444443 33
Q ss_pred EEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
....++|..+|+.+...|+.+ .+|.+.+++++++|||
T Consensus 78 ~~~~~~g~~~~~~~~~~p~~~-~~g~~~~~~~~~~DIT 114 (114)
T 3luq_A 78 CFVRADGRTQWLRWEVRPWYE-GEGRVGGVVIFTEDIT 114 (114)
T ss_dssp EEEC--CCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEcCCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeeCC
Confidence 667889999999999999998 8999999999999997
No 25
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=99.62 E-value=2e-15 Score=113.70 Aligned_cols=123 Identities=12% Similarity=0.115 Sum_probs=100.9
Q ss_pred hhHHHHHHHHhcCCCeEEEEc-CCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeE
Q 021027 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (318)
+..++|+.++++++.+++++| .+ ++++++|++++.++|++ +++|+++..++++.........+..++..+.+..
T Consensus 14 ~~~~~~~~~~~~~~~~i~~~d~~~---~~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 88 (158)
T 3k3c_A 14 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 88 (158)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHhcCCceEEEEECCC---cEeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCccc
Confidence 456789999999999999999 99 99999999999999999 8999988877777655556677777887777755
Q ss_pred EEEE-E--Ee-cC-CcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 94 VNLL-N--YK-KD-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 94 ~~~~-~--~~-~~-g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
.... . .. .+ |..+|+.++..|+++ .+|.+.+++++++|||++|++++++
T Consensus 89 ~~~~~~~~~~~~~~g~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITe~k~~e~~l 142 (158)
T 3k3c_A 89 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQAA 142 (158)
T ss_dssp EEEEEEEEESSSSCEEEEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHHHHHHH
T ss_pred ccceeEEeccCCCCcceEEEEEEEEEeEC-CCCCEEEEEEEEEehhHHHHHHHHH
Confidence 4322 2 22 22 677899999999998 8999999999999999999984443
No 26
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.62 E-value=8.4e-15 Score=124.33 Aligned_cols=116 Identities=39% Similarity=0.744 Sum_probs=106.3
Q ss_pred HHHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEE
Q 021027 22 EALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (318)
Q Consensus 22 ~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (318)
.+++.++++++++|. + |+++++|+++++++||++++++|+++..+.+++........+...+..+..+..+...
T Consensus 15 ~~~~~~~~~i~~~D~~~~~---g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 91 (332)
T 2wkq_A 15 TTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVTVQLIN 91 (332)
T ss_dssp CCGGGCCSEEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred hHhhcCCCcEEEecCCCCC---CCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeEEEEEE
Confidence 468899999999999 8 9999999999999999999999999888888777777778888888888889999989
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccc
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~ 141 (318)
.+++|..+|+.++..|+++ .+|.+.+++++.+|||++++.++
T Consensus 92 ~~~dG~~~~~~~~~~pi~d-~~g~~~~~v~~~~DITe~k~~e~ 133 (332)
T 2wkq_A 92 YTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRDAA 133 (332)
T ss_dssp ECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCHHH
T ss_pred EcCCCCEEEEeeEEEEeEc-CCCCEEEEEEEeccCchhhhhhh
Confidence 9999999999999999998 88999999999999999998743
No 27
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=99.61 E-value=4.8e-15 Score=114.91 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=99.5
Q ss_pred hhHHHHHHHHhcCCCeEEEEc-CCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeE
Q 021027 15 RYTLWVHEALDELPDSFTITD-PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d-~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (318)
+..++|+.++++++++++++| .+ ++++++|++++.++|++ +++|+++..++++.........+..++..+.+..
T Consensus 34 ~~~~~l~~l~~~~~~~i~~~d~~~---g~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 108 (185)
T 3kx0_X 34 GAAEDVRRIFEHIPAILVGLEGPD---HRFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQS 108 (185)
T ss_dssp CCHHHHHHHHHHCSSEEEEEETTT---TEEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCEE
T ss_pred hhHHHHHHHHhcCCceEEEEECCC---cEEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCccc
Confidence 456789999999999999999 99 99999999999999999 8999998887777665555666777777777765
Q ss_pred EEEEEE---ec-C-CcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccccc
Q 021027 94 VNLLNY---KK-D-GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNS 142 (318)
Q Consensus 94 ~~~~~~---~~-~-g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~ 142 (318)
...... .. + |...|+.+...|+.+ .+|.+.+++++++|||++|++|++
T Consensus 109 ~~~~~~~~~~~~~gg~~~~~~~~~~pi~~-~~g~~~g~~~~~~DITerk~~e~~ 161 (185)
T 3kx0_X 109 GSEWRLQTDYDGSGVEERYFDFVVTPRRR-ADGSIEGVQLIVDDVTSRVRARQA 161 (185)
T ss_dssp EEEEEEC--------CCEEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTTCC-
T ss_pred ccceeEEeeccCCCCccEEEEEEEEEEEC-CCCCEEEEEEEEEeCCHHHHHHHH
Confidence 442222 11 2 777899999999998 899999999999999999999666
No 28
>3ewk_A Sensor protein; PAS domain, alpha/beta fold, kinase, phosphoprotein, transfe flavoprotein; HET: FAD; 2.34A {Methylococcus capsulatus}
Probab=99.59 E-value=3e-14 Score=114.20 Aligned_cols=112 Identities=20% Similarity=0.457 Sum_probs=103.0
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEE
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (318)
.+.+..++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++.........++..+..+.++..+.
T Consensus 110 l~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~e~ 186 (227)
T 3ewk_A 110 LARLKQAMDANSEMILLTDRA---GRIIYANPALCRFSGMAEGELLGQSPSILDSPLADQETLAAMQEALQAGQPWSGRL 186 (227)
T ss_dssp HHHHHHHHHTCCSEEEEECTT---SCEEEECHHHHHHHTCCTHHHHSSCGGGGBCTTSCHHHHHHHHHHHHHTCCEECCE
T ss_pred HHHHHHHHhcCcCeEEEEcCC---CcEEEEchHHHHHhCCCHHHHcCCChhhccCCCCCHHHHHHHHHHHHcCCceeEEE
Confidence 356778999999999999999 99999999999999999999999998888888888888888999999999999998
Q ss_pred EEEecCCc------EEEEEEEEEeeccCCCCceeEEEEEEec
Q 021027 97 LNYKKDGT------PFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (318)
Q Consensus 97 ~~~~~~g~------~~~~~~~~~~i~~~~~g~~~~~i~~~~D 132 (318)
..++++|. .+|+.++..|+++ .+|.+.+++++.+|
T Consensus 187 ~~~~k~G~~~~dg~~~~~~~~~~pi~d-~~g~~~~~v~i~~D 227 (227)
T 3ewk_A 187 LNRRRTGPAPHDAEDYWAEISTTPIHT-DGNGLVGYVQIQHD 227 (227)
T ss_dssp EEEEECCSSSSCEEEEEEEEEEEEEEC-SSSCEEEEEEEEEC
T ss_pred EEECCCCCcCcccceEEEEEEEEEEEC-CCCCEEEEEEEecC
Confidence 88888886 8999999999999 89999999999987
No 29
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.59 E-value=2.1e-14 Score=120.77 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=53.9
Q ss_pred CCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccc
Q 021027 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (318)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 314 (318)
.+.++..+.+| .++|||+++..++||+++|++|+++.+++||++.+...+.+++.++.|+.
T Consensus 154 ~~fi~r~~~dG---~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~ 214 (339)
T 3rty_A 154 PKFAIRHTATG---IISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQT 214 (339)
T ss_dssp CEEEEEEETTC---BEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTS
T ss_pred ceEEEEECCCC---eEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCc
Confidence 35566677776 99999999999999999999999999999999999988888888887664
No 30
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=99.58 E-value=6.2e-15 Score=104.86 Aligned_cols=114 Identities=10% Similarity=0.061 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
+++++.++++++++++.+|.+ +.++++|+++.+++|++++++.+.. +..+.+|++.......+...+..+..+..
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~---~~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~~ 79 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVS---GQATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLTL 79 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTT---SCEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHhcCCceEEEEEcC---CCceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCceE
Confidence 467889999999999999999 9999999999999999999987764 34567787777777777777788888888
Q ss_pred EEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
++++.+++|..+|+.....|+.+ ++|.+.+++++++|||
T Consensus 80 e~r~~~~~g~~~w~~~~~~~~~~-~~g~~~~~~g~~~DIT 118 (118)
T 3icy_A 80 VYRIVTPEGKLHWIEDHMRSSFS-DDGLFSGIDGILCEVT 118 (118)
T ss_dssp EEEEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred EEEEECCCCCEEEEEEEEEEEEC-CCCCEEEEEEEEEecC
Confidence 99999999999999999999998 8899999999999998
No 31
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.58 E-value=3.4e-14 Score=122.53 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=53.7
Q ss_pred CCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccc
Q 021027 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (318)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 314 (318)
.+.++..+.+| .++|||++++.++||+++|++|+++.+++||++.+.+.+.+.+.++.+++
T Consensus 278 ~~fi~~~~~dg---~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~ 338 (387)
T 4f3l_B 278 MEYVSRHAIDG---KFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREK 338 (387)
T ss_dssp CEEEEEECTTS---BEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSC
T ss_pred ceEEEEECCCC---EEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCC
Confidence 45566677776 99999999999999999999999999999999999999999888876654
No 32
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=99.57 E-value=4.5e-14 Score=103.65 Aligned_cols=116 Identities=39% Similarity=0.742 Sum_probs=104.2
Q ss_pred HHHHHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEE
Q 021027 20 VHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (318)
Q Consensus 20 ~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (318)
++.+++.++++++++|. + +.++++|++++.++|++.++++|+++..+.++.........+...+..+.++..+.
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~---~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPD---NPIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEVTVQL 80 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhcCCCcEEEEcCCCCC---ceEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCcceEE
Confidence 34578999999999999 8 99999999999999999999999998888777777777777788888888888888
Q ss_pred EEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
....++|..+|+.+...|+.+ .+|.+.++++++.|||++++.
T Consensus 81 ~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~~~~ 122 (146)
T 2v0u_A 81 INYTKSGKKFWNLFHLQPMRD-QKGDVQYFIGVQLDGTEHVRD 122 (146)
T ss_dssp EEECTTCCEEEEEEEEEEEEC-TTSCEEEEEEEEEEESSCCCH
T ss_pred EEEecCCcEEEEEEEEEEeEC-CCCCEEEEEEEEeechHHHHH
Confidence 888899999999999999998 889999999999999999985
No 33
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.56 E-value=5.7e-14 Score=100.55 Aligned_cols=112 Identities=11% Similarity=0.085 Sum_probs=93.5
Q ss_pred HHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcC-CeEEEEEEEe
Q 021027 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-PIEVNLLNYK 100 (318)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 100 (318)
.++++++++++++|.+ ++++++|+++++++||++++++|+++..+.+|++.......+...+..+. ....+++..+
T Consensus 7 ~~~~~~~~~i~~~d~~---g~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~e~r~~~ 83 (121)
T 2kdk_A 7 EINVKPTEFITRFAVN---GKFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKEKILTDSYKFRA 83 (121)
T ss_dssp CCCCCSSEEEEEECTT---SBEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSSCEEEEEEEEEC
T ss_pred ccccCCccEEEEECCC---eeEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCCCCccEEEEEEE
Confidence 3677889999999999 99999999999999999999999988888888776666666666665433 3567888889
Q ss_pred cCCcEEEEEEEEEeeccCCC-CceeEEEEEEecccccc
Q 021027 101 KDGTPFWMLFKMSLVFGKED-GRATHFVAVQVPIVSRK 137 (318)
Q Consensus 101 ~~g~~~~~~~~~~~i~~~~~-g~~~~~i~~~~DIte~k 137 (318)
++|..+|+.++..|+++ .. +.+.+++++..||++.+
T Consensus 84 ~dG~~~~~~~~~~~~~d-~~~~~~~~~v~~~~~i~~~~ 120 (121)
T 2kdk_A 84 KDGSFVTLKSQWFSFTN-PDTKELEYIVSVNTLVLGHS 120 (121)
T ss_dssp SSSCEEEEEEEEEEEEC-CSSSCEEEEEEEEECCSSCC
T ss_pred cCCCEEEEEEEEEEEEC-CCCCeeeEEEEEEEeccccC
Confidence 99999999999999987 54 56677899999999865
No 34
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=99.53 E-value=4.9e-14 Score=101.28 Aligned_cols=116 Identities=12% Similarity=0.112 Sum_probs=87.3
Q ss_pred HHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEe
Q 021027 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYK 100 (318)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (318)
+.++++++++++++|.+ |+++++|+++++++|++.++++|+++..+.++.........+......+.. ..+.....
T Consensus 2 ~~l~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (126)
T 3mjq_A 2 KNFLETIEDMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKKE-SLPLSLEK 77 (126)
T ss_dssp CTTGGGCSSEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCCS-EEEEEEEC
T ss_pred hhHHhhCCceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCCc-eeEEEEEc
Confidence 45789999999999999 999999999999999999999999877777766655555555555554444 66777778
Q ss_pred cCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 101 ~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
++|..+|+.+...|... +...+++++++|||++|++++..
T Consensus 78 ~~g~~~~~~~~~~~~~~---~~~~~~~~~~~DITe~k~a~~~~ 117 (126)
T 3mjq_A 78 KEGTSIPAKARIWQGKW---HNEPCLFAIIKDLSKEERASSPP 117 (126)
T ss_dssp TTSCEEEEEEEEEEEES---SSSEEEEEEEEECC---------
T ss_pred cCCCEEEEEEEEEeeeE---CCceEEEEEEEechHHHHhhccc
Confidence 99999999999887654 34568899999999999985444
No 35
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=99.53 E-value=2.8e-13 Score=96.15 Aligned_cols=108 Identities=10% Similarity=0.117 Sum_probs=86.1
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEE
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (318)
..+.++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++..... ...+..+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~~~~~~-----~~~~~~~~~~~~e 82 (118)
T 3olo_A 11 EFKFAHYLINNAVEASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQDIDVDFALHD-----WEEIRQKNNYTFK 82 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGGGTBTTGGGSC-----HHHHHHHSEEEEE
T ss_pred HHHHHHHHHhcCCceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChhhcccccCHHH-----HHHHHhcCcEEEE
Confidence 4456788999999999999999 9999999999999999999999998777765433222 2233445567778
Q ss_pred EEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
....+++|..+|+.++..|+.. .+. .+++++++|||
T Consensus 83 ~~~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~DIT 118 (118)
T 3olo_A 83 TRYRSQSGRIFLVEMSLTFLED--QER-RFSCVFVREKS 118 (118)
T ss_dssp EEEECTTCCEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred EEEEccCCCEEEEEEEEEEEEE--CCc-cEEEEEEEeCC
Confidence 8888999999999999999876 333 46778999997
No 36
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=99.52 E-value=5.5e-13 Score=96.83 Aligned_cols=115 Identities=26% Similarity=0.486 Sum_probs=97.2
Q ss_pred HHHHHHHhcCCCeEEEEcC---CCCCCcEEEecHhHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 18 LWVHEALDELPDSFTITDP---SISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~---~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
+.+...++.++.+++++|. + ++++++|++++.++|++.++++|++ ...+.++.........+...+..+..+
T Consensus 19 ~~~~~~~~~~~~~i~~~d~~~~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 19 DTIIRKFEGQSRKFIIANARVEN---CAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHHTTTTSEEEEEESSSTT---CBEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHHhcCCCCEEEEecCCCC---CEEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 4455667889999999999 8 9999999999999999999999998 455666665555566666777777777
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
..+.....++|..+|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 96 ~~~~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~Dit~~ 138 (138)
T 2l0w_A 96 KVEIAFYRKDGSCFLCLVDVVPVKN-EDGAVIMFILNFEVVMEK 138 (138)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEEEC-TTSCEEEEEEEEEEEEEC
T ss_pred eeEEEEECCCCCEEEEEEEEEEEeC-CCCCEEEEEEEEEeccCC
Confidence 7788788899999999999999998 789999999999999975
No 37
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=99.51 E-value=9.5e-13 Score=91.33 Aligned_cols=107 Identities=27% Similarity=0.520 Sum_probs=89.1
Q ss_pred CeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEE
Q 021027 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (318)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (318)
.+++++|...++++++++|+++++++|++.++++|++ ...+.++.........+...+..+..+..+.....++|..+
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 81 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEERKVEIAFYRKDGSCF 81 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCEEEEEEEECTTSCEE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCceEEEEEEcCCCCEE
Confidence 5788888743349999999999999999999999997 45555555555556667777777788888888888999999
Q ss_pred EEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 107 ~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
|+.+...|+.+ .+|.+.+++++++|||++
T Consensus 82 ~~~~~~~~~~~-~~g~~~~~~~~~~DiTe~ 110 (110)
T 1byw_A 82 LCLVDVVPVKN-EDGAVIMFILNFEVVMEK 110 (110)
T ss_dssp EEEEEEEEEEC-TTCCEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeec-CCCCEEEEEEEEEeccCC
Confidence 99999999998 789999999999999985
No 38
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=99.50 E-value=1.5e-13 Score=98.04 Aligned_cols=116 Identities=9% Similarity=0.060 Sum_probs=94.6
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCC--CCcccCCCCChHHHHHHHHHHHhcCCe
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRN--GRMFQGPRTNRRTIMEIREAIREERPI 92 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~ 92 (318)
+..++++.++++++++++++|.+ ++.++++|+++++++|+++++++|.. +..+.++++...+...+.. +..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~d~~--~~~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 84 (125)
T 3eeh_A 8 KSERRVRELTEATNDILWEFTAD--LSEVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGESA 84 (125)
T ss_dssp --CHHHHHHHSCCCCEEEEEETT--SSCEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTCCE
T ss_pred HHHHHHHHHHhcCCceEEEEEcC--CCcEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCCCc
Confidence 45567889999999999999975 47999999999999999999999876 4445555544444444444 5567777
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
..++....++|...|+.+...|+.+ .+|.+.+++++++|||
T Consensus 85 ~~e~~~~~~~g~~~~~~~~~~~~~~-~~g~~~~~~~~~~DIT 125 (125)
T 3eeh_A 85 DVECRVNATEEYQRWVWIQGEPITN-DAGETVRVAGFARDIT 125 (125)
T ss_dssp EEEEEECGGGTTCEEEEEEEEEEEC-TTSCEEEEEEEEEECC
T ss_pred cEEEEEEcCCCCEEEEEEecEEEEC-CCCCEEEEEEEEEecC
Confidence 8888888899999999999999998 8999999999999997
No 39
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=99.50 E-value=8.2e-13 Score=95.11 Aligned_cols=118 Identities=13% Similarity=0.175 Sum_probs=83.2
Q ss_pred hHHHhhhhhhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhc--CCCCCcccCCCCChHHHHHHHH
Q 021027 7 LIEQSFNNRYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEII--GRNGRMFQGPRTNRRTIMEIRE 84 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~--g~~~~~l~~~~~~~~~~~~~~~ 84 (318)
..++.+. +.+++++.++++++++++++|.+ |+++++|+++++++||++++++ |++...+.+ +.......+..
T Consensus 7 ~~e~~L~-~~~~~~~~l~e~~~~~i~~~d~~---g~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~--~~~~~~~~~~~ 80 (126)
T 3bwl_A 7 RREKRLE-ETSSRLEALFENSPDMIDVLDAD---GTICEVNQRFCAELGYDESEVLGRSIWEFDLMF--DAEDVQTQLSG 80 (126)
T ss_dssp HHHHHHH-HHHHHHHHHHHHCSSEEEEECTT---CBEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC--CHHHHHHHHHT
T ss_pred HHHHHHH-HHHHHHHHHHhhCCcEEEEEcCC---CCEEEEcHHHHHHhCCCHHHHhhCCCchhhccC--CHHHHHHHHHH
Confidence 3444454 56678999999999999999999 9999999999999999999994 565555544 21221111111
Q ss_pred HHHhcCCeEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
...+.....+..+.+++|..+|+.++..|+.. +|.. .++++++|||
T Consensus 81 -~~~~~~~~~e~~~~~~dG~~~~~~~~~~~~~~--~~~~-~~~~~~~DIT 126 (126)
T 3bwl_A 81 -FSVDERRKFEGLYERRDGSTMSVEVHLLRFNL--EGED-RFLAISRDIT 126 (126)
T ss_dssp -CCTTCEEEEEEEEECTTSCEEEEEEEEEEEEE--TTEE-EEEEEEEEC-
T ss_pred -HhcCCCcceEEEEEeCCCCEEEEEEEeEEEec--CCcE-EEEEEEEeCC
Confidence 11223344556667899999999988888754 4443 5788899997
No 40
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=99.48 E-value=2.5e-14 Score=131.00 Aligned_cols=116 Identities=14% Similarity=0.106 Sum_probs=103.0
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEE
Q 021027 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLN 98 (318)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (318)
++..++++++++++++|.+ |++.++|+++++++||+.++.+|+......++++.. ....+...+..++.+.+++..
T Consensus 519 ~~~~lle~a~~~i~~~D~~---grI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~~E~~~ 594 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAE---GRILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWRGEVLL 594 (635)
T ss_dssp SHHHHHHHCSSCCEEEETT---CCEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBCCCCEE
T ss_pred HHHHHHHhCCCcEEEECCC---CeEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEEEEEEE
Confidence 4667899999999999999 999999999999999999999998766666665554 455667777888888889989
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
+++||+.+|+.++..|+++ .+|.+.|++++++|||++|++
T Consensus 595 ~~~dG~~~~~~~~~~pv~d-~~G~v~g~v~i~~DITerK~a 634 (635)
T 4eho_A 595 RGAGNRPLPLAVRADPVTR-TEDQSLGFVLIFSDATDRRTA 634 (635)
T ss_dssp CCSSSSCEECCCCEEEECS-TTSSCCEEEECCCCCSSSCCC
T ss_pred EccCCcEEEEEEEEEEEEC-CCCCEEEEEEEEEeCchHhhC
Confidence 9999999999999999999 899999999999999999987
No 41
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=99.48 E-value=2.8e-13 Score=102.30 Aligned_cols=122 Identities=20% Similarity=0.247 Sum_probs=84.3
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC----
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---- 91 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---- 91 (318)
....+..+++.++++++++|.+ +.++++|++++.++|++.++++|+++..++++.........+......+..
T Consensus 38 ~~~~~~~~l~~~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (167)
T 1v9y_A 38 ADGIFFPALEQNMMGAVLINEN---DEVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEG 114 (167)
T ss_dssp --CCHHHHHHTCSSEEEEECTT---SBEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC--------
T ss_pred hhHHHHHHHHhCCCCEEEECCC---CcEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcCCCcccc
Confidence 4457889999999999999999 999999999999999999999999877777665544444444444433322
Q ss_pred eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccccc
Q 021027 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~ 143 (318)
+..+......+|..+|+.+...|+. .+|.+ +++++++|||+++++++++
T Consensus 115 ~~~~~~~~~~~g~~~~~~~~~~~~~--~~g~~-~~~~~~~DiT~~~~~e~~l 163 (167)
T 1v9y_A 115 MSRELQLEKKDGSKIWTRFALSKVS--AEGKV-YYLALVRDASVEMAQKEQT 163 (167)
T ss_dssp --CEEEEECTTSCEEEEEEEEEEEE--ETTEE-EEEEEEEC-----------
T ss_pred cceEEEEEcCCCcEEEEEEEEEEEe--cCCCE-EEEEEEecCcHHHHHHHHH
Confidence 3446667788999999999999994 46665 4899999999999985443
No 42
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=99.45 E-value=1.6e-12 Score=96.52 Aligned_cols=106 Identities=34% Similarity=0.562 Sum_probs=91.4
Q ss_pred HHHhcCCCeEEEEc---CCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCC-----------ChHHHHHHHHHHH
Q 021027 22 EALDELPDSFTITD---PSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRT-----------NRRTIMEIREAIR 87 (318)
Q Consensus 22 ~~~~~~~~~i~~~d---~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~-----------~~~~~~~~~~~~~ 87 (318)
.+++.. ++++++| .+ |+++++|+++++++||+.++++|+++..+.+++. .......+...+.
T Consensus 30 ~~~~~~-~~i~~~d~~d~~---g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (149)
T 3d72_A 30 GPVDTS-VALILCDLKQKD---TPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAID 105 (149)
T ss_dssp CSCCTT-SCEEEEETTSTT---CCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHH
T ss_pred HhhcCC-ccEEEEeccCCC---CcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHH
Confidence 456664 8999999 67 9999999999999999999999999887777663 5566667777888
Q ss_pred hcCCeEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEec
Q 021027 88 EERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVP 132 (318)
Q Consensus 88 ~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~D 132 (318)
.+..+..+....+++|..+|+.++..|+.+ .+|.+.+++++++|
T Consensus 106 ~~~~~~~e~~~~~~dG~~~~~~~~~~~i~~-~~g~~~~~v~~~~D 149 (149)
T 3d72_A 106 RNAEVQVEVVNFKKNGQRFVNFLTMIPVRD-ETGEYRYSMGFQCE 149 (149)
T ss_dssp HTCCEEEEEEEECTTCCEEEEEEEEEEEEC-TTSSEEEEEEECCC
T ss_pred CCCceEEEEEEECCCCCEEEEEEEEEEEEc-CCCCEEEEEEEEeC
Confidence 888888888888999999999999999998 88999999998876
No 43
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.43 E-value=1.8e-12 Score=93.96 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcC------
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER------ 90 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~------ 90 (318)
...+..++++++++++++|.+ |+|+++|+++++++||++++++|+++..++++.........+......+.
T Consensus 6 ~~~l~~i~~~~~d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T 3mfx_A 6 LETIELFIQHLTEAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQARYDNLLSHDVQLGTNCGQPV 82 (129)
T ss_dssp HHHHHHHHTTCSSEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGGGGCTTC----------CCS
T ss_pred HHHHHHHHhcCCceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHHHHHHHHHHHhcCccccccc
Confidence 346788999999999999999 99999999999999999999999998888776654332221111111111
Q ss_pred -CeEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccc
Q 021027 91 -PIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (318)
Q Consensus 91 -~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte 135 (318)
....+....++||..+|+.++++|+.+ +.. .++++++|...
T Consensus 83 ~~~~~E~~~~rkdG~~~~velsis~i~~-~~~---~~v~~~~~~~~ 124 (129)
T 3mfx_A 83 QHPAQETTLICASGKAKDVELSISYIPG-HEP---MFVMVMHDLEH 124 (129)
T ss_dssp CEEEEEEEEECTTSCEEEEEEEEEEECS-SSC---EEEEEEEEC--
T ss_pred CCCceEEEEEcCCCCEEEEEEEEEEecC-CCc---EEEEEEechhh
Confidence 234677788999999999999999965 222 36777888654
No 44
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=99.43 E-value=3.8e-13 Score=96.53 Aligned_cols=108 Identities=10% Similarity=0.081 Sum_probs=74.7
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEE
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (318)
.+++++.++++++++++++|.+ |+++++|+++++++|+++++++|+++..+++++...............+...
T Consensus 17 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (125)
T 3fc7_A 17 TRKKFESLVSDSPDGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGTAT--- 90 (125)
T ss_dssp ---------CCSCCEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTSCE---
T ss_pred HHHHHHHHHhcCCCeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCCeE---
Confidence 5678899999999999999999 9999999999999999999999999887763322222222223444444433
Q ss_pred EEEEecCCc-EEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 96 LLNYKKDGT-PFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 96 ~~~~~~~g~-~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
...+|. ..|+.+...|+.+ +|...+++++++|||
T Consensus 91 ---~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~DIT 125 (125)
T 3fc7_A 91 ---RSEDAVGGRHYHNQYIPVDS--HRKSDTFQLVSRDIT 125 (125)
T ss_dssp ---EEEEEETTEEEEEEEEESST--TTTTTEEEEEEEECC
T ss_pred ---EeEcCCCcEEEEEEEEeEec--CCCeEEEEEEEecCC
Confidence 122344 6789999999876 577789999999997
No 45
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=99.43 E-value=2.1e-12 Score=103.71 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=85.4
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhc------------CCChhhhcCCCCCcccCCCCChHHHHHHH
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMS------------GFSRAEIIGRNGRMFQGPRTNRRTIMEIR 83 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~------------G~~~~e~~g~~~~~l~~~~~~~~~~~~~~ 83 (318)
...++..++++++.+++++|.+ |+|+|+|+++++++ ||++++++|+++..+.+. +.....++
T Consensus 20 e~~~l~~iLd~~~~~vii~D~~---g~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~ 93 (233)
T 3vol_A 20 HMARIKSALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLL 93 (233)
T ss_dssp HHHHHHHHHTTSSSEEEEEETT---SBEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHH
T ss_pred HHHHHHHHHhcCCCcEEEECCC---CcEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHH
Confidence 4467889999999999999999 99999999999998 899999999998777643 22222222
Q ss_pred HHHHhcCCeEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccc
Q 021027 84 EAIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~ 139 (318)
..+. ..+..++ ..+|. |+.++..|+.+ ++|.+.|++.+++|||+++++
T Consensus 94 ~~~~--~~~~~~~---~~~g~--~~~~~~~Pi~d-~~G~~~g~v~~~~DITe~~~~ 141 (233)
T 3vol_A 94 ANLT--GVHKAEL---NLGGR--RFSLDVVPVFN-DANERLGSAVQWTDRTEEHRA 141 (233)
T ss_dssp HTCC--SCEEEEE---EETTE--EEEEEEEEEEC-TTCCEEEEEEEEEECHHHHHH
T ss_pred Hhcc--cceeEEE---EECCE--EEEEEEEEEEC-CCCCEEEEEEEEehhhHHHHH
Confidence 2211 2333333 23553 77899999998 899999999999999999997
No 46
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.37 E-value=2.5e-12 Score=91.68 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=85.2
Q ss_pred HHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEE
Q 021027 18 LWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLL 97 (318)
Q Consensus 18 ~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (318)
..+++++++++++++++|.+ ++++++|+++++++|+++++++|+++..++++.........+..++..+.+...++.
T Consensus 12 ~~~~~il~~~~~~i~~~D~~---g~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (118)
T 3fg8_A 12 SGRENLYFQGGLGFMALDED---LRIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQTRVD 88 (118)
T ss_dssp -CCCCSSSCTTCEEEEECTT---CBEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEEEEEE
T ss_pred chHHHHHhhCCceEEEECCC---CeEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceEEEEE
Confidence 34567899999999999999 999999999999999999999999987777666555666777788888887776432
Q ss_pred EEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 98 NYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 98 ~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
....+| .|+.+...|+.+ +++++++|||++
T Consensus 89 ~~~~~g--~~~~~~~~p~~~-------g~v~~~~DITer 118 (118)
T 3fg8_A 89 SLYSPG--MTIEVTAAADSG-------ALVVHFRDVTAE 118 (118)
T ss_dssp CSSSTT--CEEEEEEEEETT-------EEEEEEEECSCC
T ss_pred EEcCCC--eEEEEEEEEcCC-------cEEEEEEeccCC
Confidence 223355 478888888754 378889999985
No 47
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=99.36 E-value=9.5e-12 Score=92.55 Aligned_cols=118 Identities=13% Similarity=0.126 Sum_probs=90.6
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHh---HHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeE
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRG---FLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIE 93 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~---~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 93 (318)
...+..++++++.+++++|.+ ++++|+|++ +++++| ..++++|+++..+.++. .......+...++.+....
T Consensus 18 ~~~l~~IL~~~~~gI~~vD~~---g~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~~~-~~~~v~~i~~~l~~g~~~~ 92 (151)
T 2qkp_A 18 VEQANLILNHLPLEITFVNKD---DIFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHPPK-VLDKVKKVFELLRNGQRDK 92 (151)
T ss_dssp HHHHHHHHHHSSSEEEEEETT---SBEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSCHH-HHHHHHHHHHHHHTTSBSE
T ss_pred HHHHHHHHHhCCCceEEEcCC---CeEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCCHH-HHHHHHHHHHHHHcCCccE
Confidence 356889999999999999999 999999999 999999 55789999987765422 2233445566677677665
Q ss_pred EEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEecccccccccc
Q 021027 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRN 141 (318)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~ 141 (318)
.+.... .++...++.++..|+++ ++|.+.|++.+++|||+.++.++
T Consensus 93 ~~~~~~-~~~~~~~v~v~~~Pi~d-~~G~~~G~vev~~Dit~l~~le~ 138 (151)
T 2qkp_A 93 VNMWFQ-SERLGKFVYVTYAAVRD-QAGDFQGVLEYVQDIKPFFELDS 138 (151)
T ss_dssp EEEEEE-ETTTTEEEEEEEEEEEC-TTCCEEEEEEEEEECGGGGGGGG
T ss_pred EEEEEe-cCCCCeEEEEEEEEEEC-CCCCEEEEEEEEEECHHHHhhhh
Confidence 554432 23212467888999998 78999999999999999988733
No 48
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=99.36 E-value=1.8e-11 Score=87.60 Aligned_cols=106 Identities=16% Similarity=0.219 Sum_probs=78.2
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcC------------CChhhhcCCCCCcccCCCCChHHHHHHHH
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG------------FSRAEIIGRNGRMFQGPRTNRRTIMEIRE 84 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G------------~~~~e~~g~~~~~l~~~~~~~~~~~~~~~ 84 (318)
..++++++++++++++++|.+ |+++++|+++++++| +++++++|++...+.+. +.....+..
T Consensus 4 ~~rl~~il~~~~~gviv~D~~---g~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~~---~~~~~~~~~ 77 (121)
T 4hi4_A 4 MARIASALDNVSANVMIADND---LNIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLA 77 (121)
T ss_dssp HHHHHHHHTTSSSEEEEEETT---CBEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCSS---HHHHHHHHH
T ss_pred HHHHHHHHhcCCccEEEEcCC---CeEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcCC---HHHHHHHHh
Confidence 357889999999999999999 999999999999996 88899999987776543 122222222
Q ss_pred HHHhcCCeEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 85 AIREERPIEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
... ..+..+.. .+|. ++.++..|+.+ .+|.+.|++.+++|||++
T Consensus 78 ~~~--~~~~~~~~---~~~~--~~~~~~~pi~~-~~g~~~g~v~~~~DiTee 121 (121)
T 4hi4_A 78 NLT--GVHKAELN---LGGR--RFSLDVVPVFN-DANARLGSAVQWTDRTEE 121 (121)
T ss_dssp HCS--SCEEEEEE---ETTE--EEEEEEEEEEC-TTSCEEEEEEEEEECC--
T ss_pred CcC--CCcEEEEE---ECCE--EEEEEEEEEEC-CCCCEEEEEEEEEEecCC
Confidence 111 23333322 2454 55788999998 789999999999999974
No 49
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=99.36 E-value=2.7e-12 Score=91.74 Aligned_cols=74 Identities=20% Similarity=0.320 Sum_probs=66.1
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
...++.++++++++|+++|.+| +|+|+|++|++++||+++|++|+++..+.++.........++.++..+.+|.
T Consensus 4 ~~~~~~~~~~~~~~i~~~d~~g---~i~~~N~a~~~~~G~~~~elig~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 77 (120)
T 2gj3_A 4 PEIFRQTVEHAPIAISITDLKA---NILYANRAFRTITGYGSEEVLGKNESILSNGTTPRLVYQALWGRLAQKKPWS 77 (120)
T ss_dssp HHHHHHHHHHCSSEEEEECTTC---BEEEECHHHHHHHCCCTTGGGGCBGGGGCCTTSCHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHhCCCeEEEECCCC---CEEeehHHHHHHHCcCHHHHcCCCHHHcCCCCCCHHHHHHHHHHHHcCCCEE
Confidence 3457889999999999999997 9999999999999999999999999999888887778888888888887763
No 50
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=99.34 E-value=2.2e-12 Score=90.63 Aligned_cols=67 Identities=45% Similarity=0.942 Sum_probs=60.4
Q ss_pred cCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
++++|+++|.+.++++|+|+|++|++++||+++|++|+++..+.+|...+...+.+++++..+++|.
T Consensus 2 ~~~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 68 (109)
T 1n9l_A 2 LRHTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNCRFLQGEGTDPKEVQKIRDAIKKGEACS 68 (109)
T ss_dssp CSCEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEE
T ss_pred CccEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCchhcCCCCCCHHHHHHHHHHHHcCCcEE
Confidence 5899999997655679999999999999999999999999999888888888999999999988874
No 51
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=99.34 E-value=4.5e-11 Score=99.44 Aligned_cols=58 Identities=9% Similarity=0.085 Sum_probs=50.6
Q ss_pred cEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccc
Q 021027 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 253 ~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
.+...+.+| .++|||+++..++||+++|++|+++.+++||++.+.+.+...+.++.+.
T Consensus 176 Fitrh~~dG---~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~ 233 (317)
T 4dj3_A 176 FTTTHTPGC---VFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAG 233 (317)
T ss_dssp EEEEECTTS---BEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTT
T ss_pred eEEEecCCC---eEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCC
Confidence 344455555 9999999999999999999999999999999999999988888888654
No 52
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.34 E-value=2.2e-12 Score=110.38 Aligned_cols=108 Identities=8% Similarity=0.097 Sum_probs=95.4
Q ss_pred CCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEEE
Q 021027 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPFW 107 (318)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 107 (318)
...++..+.+ |.++|+|+++..++||++++++|+++..+++|++.......+...+..+.....++++++++|..+|
T Consensus 251 ~~f~~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~g~~~~~eyR~~~kdG~~vW 327 (361)
T 4f3l_A 251 EEFTSRHSLE---WKFLFLDHRAPPIIGYLPFEVLGTSGYDYYHVDDLENLAKCHEHLMQYGKGKSCYYRFLTKGQQWIW 327 (361)
T ss_dssp CEEEEEECTT---SBEEEECTTSHHHHCCCHHHHTTSBGGGGBCHHHHHHHHHHHHHHHHHSEEECCCEEEECTTSEEEE
T ss_pred ceeEEEEcCC---ceEEEECChhhhhhCcCHHHHcCCCHHHeECHHHHHHHHHHHHHHHhCCCcceEEEEEEecCCCEEE
Confidence 3455667778 9999999999999999999999999999999988877777788888877777778889999999999
Q ss_pred EEEEEEeeccCC-CCceeEEEEEEecccccccc
Q 021027 108 MLFKMSLVFGKE-DGRATHFVAVQVPIVSRKHM 139 (318)
Q Consensus 108 ~~~~~~~i~~~~-~g~~~~~i~~~~DIte~k~~ 139 (318)
+.....|+.+ . +|.+.+++++.+|||+++..
T Consensus 328 v~~~~~~v~~-~~~g~~~~iv~~~~dITe~~~~ 359 (361)
T 4f3l_A 328 LQTHYYITYH-QWNSRPEFIVCTHTVVSYAEVR 359 (361)
T ss_dssp EEEEEEEEEC-TTTCCEEEEEEEEEECCHHHHH
T ss_pred EEEEEEEEEc-CCCCCeeEEEEEEEECChhHhh
Confidence 9999999998 6 79999999999999998864
No 53
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.33 E-value=6.6e-12 Score=88.34 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=68.5
Q ss_pred HHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEec
Q 021027 22 EALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKK 101 (318)
Q Consensus 22 ~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (318)
.+++++++.++++|.+ |+++|+|+++++++||++++++|+++.++.+|++.......+. ..+.....+++++++
T Consensus 3 ~lle~~~d~i~v~d~~---G~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~~---~~~~~~~~e~r~~~k 76 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASN---GRIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYFY---NEHHLMPCTFRFIKK 76 (111)
T ss_dssp ------CCEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHH---CSCCSSCEEEEEECT
T ss_pred chhhcCCCEEEEEcCC---CeEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHHh---ccCCCccEEEEEEcC
Confidence 4788999999999999 9999999999999999999999999888888887655443321 223334567788899
Q ss_pred CCcEEEEEEEEEeecc
Q 021027 102 DGTPFWMLFKMSLVFG 117 (318)
Q Consensus 102 ~g~~~~~~~~~~~i~~ 117 (318)
||..+|+..++.++.+
T Consensus 77 dG~~~wve~~~~~v~~ 92 (111)
T 2vlg_A 77 DHTIVWVEAAVEIVTT 92 (111)
T ss_dssp TSCEEEEEEEEEEC--
T ss_pred CCCEEEEEEEEEEEec
Confidence 9999999999999987
No 54
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.31 E-value=6.6e-12 Score=108.29 Aligned_cols=108 Identities=8% Similarity=0.019 Sum_probs=88.8
Q ss_pred CCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC-eEEEEEEEecCCcEE
Q 021027 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IEVNLLNYKKDGTPF 106 (318)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~ 106 (318)
...++..+.+ |.++|+|+++..++||++++++|+++..++||++.......+...+..+.. ...++++++++|..+
T Consensus 278 ~~fi~~~~~d---g~~~~vn~~~~~ilGY~~eEl~g~~~~~~iHpdD~~~~~~~~~~~l~~~~~~~~~eyR~~~kdG~~v 354 (387)
T 4f3l_B 278 MEYVSRHAID---GKFVFVDQRATAILAYLPQELLGTSCYEYFHQDDIGHLAECHRQVLQTREKITTNCYKFKIKDGSFI 354 (387)
T ss_dssp CEEEEEECTT---SBEEEECTHHHHHHCCCHHHHTTSBGGGTBCHHHHHHHHHHHHHHTTCSSCEECCCEEEECTTSCEE
T ss_pred ceEEEEECCC---CEEEEECCCcccccCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhcCCCeeeEEEEEEccCCCEE
Confidence 3456667888 999999999999999999999999988899998877777777676655544 456888999999999
Q ss_pred EEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 107 ~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
|+.....++.++.+|.+.+++++.+|||++|+
T Consensus 355 Wv~~~~~~~~~~~~g~~~~ivg~~~dIT~Rk~ 386 (387)
T 4f3l_B 355 TLRSRWFSFMNPWTKEVEYIVSTNTVVLANVL 386 (387)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEECC----
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEEEcchhhc
Confidence 99999999998237899999999999999985
No 55
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=99.31 E-value=3.1e-11 Score=100.17 Aligned_cols=58 Identities=12% Similarity=0.060 Sum_probs=49.8
Q ss_pred cEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccc
Q 021027 253 SFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 253 ~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
.+...+.+| .++|+|+++..++||+++|++|+++.+++||++.....+...+.++.+.
T Consensus 167 Fitrh~~dG---~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g 224 (309)
T 3gdi_A 167 FTTTHTPNC---LFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGG 224 (309)
T ss_dssp EEEEECTTC---BEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTT
T ss_pred EEEEecCCC---eEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 344455555 9999999999999999999999999999999999888888888887543
No 56
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=99.30 E-value=1.7e-11 Score=102.08 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=49.7
Q ss_pred CcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 252 ~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
..+...+.+| .++|||+++..++||+++|++|+++.+++||++.+.+.+...+.++.
T Consensus 177 ~Fitrh~~dG---~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~ 233 (320)
T 4dj2_A 177 IFTTRHTPSC---LFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQL 233 (320)
T ss_dssp EEEEEECTTC---BEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTS
T ss_pred eEEEEecCCc---eEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhc
Confidence 3445556565 99999999999999999999999999999999999888888888874
No 57
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=99.29 E-value=6e-12 Score=91.49 Aligned_cols=72 Identities=36% Similarity=0.763 Sum_probs=61.4
Q ss_pred HHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
.++++++++|+++|.+|++++|+|||++|++++||+++|++|+++..+.++.........+..++..+.++.
T Consensus 3 ~~~~~~~~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 74 (132)
T 2pr5_A 3 HMLDHVRVGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNCRFLQGKHTDPAEVDNIRTALQNKEPVT 74 (132)
T ss_dssp ---CCCCCEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEE
T ss_pred hHHhcCCCcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCChhhhCCCCCCHHHHHHHHHHHHcCCCeE
Confidence 467889999999999866679999999999999999999999999988888888888888888888777653
No 58
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.23 E-value=1.2e-10 Score=82.13 Aligned_cols=106 Identities=12% Similarity=0.122 Sum_probs=80.5
Q ss_pred HHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCe-EEEEEE
Q 021027 20 VHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPI-EVNLLN 98 (318)
Q Consensus 20 ~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (318)
...++++++++++++|.+ |+++++|+++++++|++.++++|+++..++++... ....+...+..+... ..+...
T Consensus 9 ~~~il~~~~~~i~~~D~~---g~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (115)
T 3b33_A 9 PSAILNNMVTATLILDDG---LAIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQSITDSDVTF 83 (115)
T ss_dssp HHHHHHHCSSEEEEECTT---CBEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCCEEEEEEEE
T ss_pred HHHHHhhcCceEEEECCC---CcEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCcccCCceEE
Confidence 456999999999999999 99999999999999999999999987666543221 123344455556553 345544
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
. ++|..+|+.++..|+.+ +|. .+++.+++||+
T Consensus 84 ~-~~g~~~~~~~~~~pi~~--~g~-~~~l~~~~Di~ 115 (115)
T 3b33_A 84 V-VDGRPLMLEVTVSPITW--QRQ-LMLLVEMRKID 115 (115)
T ss_dssp E-ETTEEEEEEEEEEEEEE--TTE-EEEEEEEEEC-
T ss_pred e-cCCCEEEEEEEEEEeec--CCc-eEEEEEEEeCC
Confidence 4 68988999999999975 454 58889999985
No 59
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=99.20 E-value=2.6e-11 Score=86.19 Aligned_cols=74 Identities=14% Similarity=0.112 Sum_probs=57.2
Q ss_pred ccchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 238 ~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
..+..++.++++++++|+++|.+| +|++||+++++|+||+++|++|+++..+.++... .........+..+.++
T Consensus 8 ~se~~~~~l~e~~~d~i~~~d~~g---~i~~vN~a~~~l~Gy~~~el~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (117)
T 2r78_A 8 FQSNAYRALFEHAIDGIFIMDAEG---HYLDVNPAICSAIGYTRDEFLALDWGVLSRGVDS-GWAAASLARIVGGEPL 81 (117)
T ss_dssp HHHHHHHHHHHHCSSEEEEECTTS---BEEEECHHHHHHHCCCHHHHTTCBTTTTTTCSTT-SHHHHHHHHHHTTCCE
T ss_pred HhHHHHHHHHhcCCceEEEECCCC---CEEEecHHHHHHHCcCHHHHcCCCHHHhCCccch-hHHHHHHHHHHcCCcE
Confidence 345668899999999999999987 9999999999999999999999998877544332 2333444555555443
No 60
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=99.17 E-value=2.3e-11 Score=88.08 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=55.4
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
..++.++++++++|+++|.+| +|++||+++++|+||+++|++|+++..+.++.........+...+..
T Consensus 16 ~~~~~l~~~~~d~i~~~d~~g---~i~~~N~a~~~l~Gy~~~eliG~~~~~l~~~~~~~~~~~~~~~~~~~ 83 (130)
T 1d06_A 16 AHLRSILDTVPDATVVSATDG---TIVSFNAAAVRQFGYAEEEVIGQNLRILMPEPYRHEHDGYLQRYMAT 83 (130)
T ss_dssp SCHHHHHTTCSSEEEEEETTS---BEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCeEEEECCCC---eEEEEcHHHHHHHCCCHHHHcCCcHHHHCCchhHHHHHHHHHHHHhc
Confidence 347789999999999999987 99999999999999999999999999988666544444444444433
No 61
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=99.15 E-value=3.6e-10 Score=96.79 Aligned_cols=115 Identities=18% Similarity=0.282 Sum_probs=92.2
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEE
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (318)
....+.+++++++++|+++|.+ |+|+++|++ ++++ ++.++++|+++..++++. .......+...+..+.....+
T Consensus 237 ~~~~l~~IL~~l~dgIivvD~~---g~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p~~-~~~~~~~l~~~l~~g~~~~~~ 310 (369)
T 3cax_A 237 NIEELKAIFEALPVDVTFIDKD---DRVRFFSPG-ERIF-TRTPSVLGRPVQLCHPPK-SVYVVNKILKAFKEGRKKEAT 310 (369)
T ss_dssp CHHHHHHHHHHSSSEEEEECTT---SBEEEECCS-SCSS-CCCGGGTTCBTTTSSCGG-GHHHHHHHHHHHHHTSCSCEE
T ss_pred hHHHHHHHHHhCCCcEEEECCC---CcEEEEcCH-HHcc-CChHHHcCCcHHHHCChh-hHHHHHHHHHHHHcCCceEEE
Confidence 4467889999999999999999 999999999 9999 889999999988776543 233344556667777665544
Q ss_pred EEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccc
Q 021027 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMR 140 (318)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~ 140 (318)
... ..+| .++.++..|+++ .+|.+.|++.+++|||+.++.+
T Consensus 311 ~~~-~~~g--~~v~v~~~PI~d-~~G~~~G~v~v~~DITe~~~le 351 (369)
T 3cax_A 311 FWL-RLRE--KYVYIKYVPLFN-EKGEYIGTLEMTMDIAPYKKIE 351 (369)
T ss_dssp EEE-EETT--EEEEEEEEEEEC-TTSCEEEEEEEEEECHHHHTCC
T ss_pred EEE-eeCC--EEEEEEEEEEEC-CCCCEEEEEEEEEcCHHHHHHH
Confidence 433 3455 478899999998 8999999999999999998873
No 62
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=99.12 E-value=6.8e-11 Score=84.36 Aligned_cols=65 Identities=8% Similarity=0.116 Sum_probs=58.1
Q ss_pred HHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
..+++++++.|++.|.+| +|+|+|+++++++||+++|++|+++.++++|++.+.+.+.+.++++.
T Consensus 5 ~ll~e~~~d~i~~~d~~g---~i~~~n~~~~~~~G~~~~el~g~~~~~~i~p~d~~~~~~~~~~~~~~ 69 (121)
T 3f1p_B 5 GLNVCQPTRFISRHNIEG---IFTFVDHRCVATVGYQPQELLGKNIVEFCHPEDQQLLRDSFQQVVKL 69 (121)
T ss_dssp ---CCCCCEEEEEECTTS---BEEEECTTHHHHHSCCGGGTTTSBGGGGBCTTTHHHHHHHHHHHTTS
T ss_pred cceecCCCceEEEECCCc---eEEEECcchhhhhCCChHHHcCCCHHHeECHHHHHHHHHHHHHHHhc
Confidence 357788999999999997 99999999999999999999999999999999999999999888853
No 63
>4hia_A LOV protein; PAS, HTH, signaling protein; HET: FMN; 1.95A {Rhodobacter sphaeroides} PDB: 4hnb_A* 4hj4_A* 4hj6_A* 4hj3_A*
Probab=99.11 E-value=1.4e-10 Score=88.60 Aligned_cols=76 Identities=28% Similarity=0.579 Sum_probs=67.8
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
..++.++++++++|+++|.+.++++|+++|++|++++||++++++|+++..+.++.+.+.....+..++..+.++.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~a~~~~~G~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (176)
T 4hia_A 7 EKIRAVFDRSGVALTLVDMSLPEQPVVLANPPFLRMTGYTEGQILGFNCRFLQRGDENAQARADIRDALKLGRELQ 82 (176)
T ss_dssp HHHHHHHHHCSSCCEEEETTSTTCCEEEECHHHHHHHTCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHhcCCCcEEEEecCCCCCcEEEECHHHHHHHCcCHHHHcCCCcceeeCCCCCHHHHHHHHHHHHcCCceE
Confidence 3477899999999999999833349999999999999999999999999999999999999999999999888764
No 64
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=99.10 E-value=2.6e-10 Score=92.96 Aligned_cols=78 Identities=29% Similarity=0.514 Sum_probs=69.0
Q ss_pred cchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 239 ~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
....++.++++++++|+++|..+.+++|++||++|++++||+++|++|+++.++.+|.+.+.....+..++..+.+|.
T Consensus 61 ~~~~~~~i~~~~~~~i~~~d~~~~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 138 (258)
T 3p7n_A 61 PAQWVLDLIEASPIASVVSDPRLADNPLIAINQAFTDLTGYSEEECVGRNCRFLAGSGTEPWLTDKIRQGVREHKPVL 138 (258)
T ss_dssp CCHHHHHHHHTCSSEEEEECTTSTTCCEEEECHHHHHHHCCCGGGTTTSCGGGGCCTTCCHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHhcCCccEEEEcCCCCCCcEEEEhHHHHHHcCCCHHHHCCCChhhccCCCCchhHHHHHHHHHHcCCCeE
Confidence 345588899999999999999332349999999999999999999999999999999999999999999999888764
No 65
>3mxq_A Sensor protein; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.78A {Vibrio cholerae o1 biovar el tor}
Probab=99.08 E-value=6e-11 Score=88.17 Aligned_cols=68 Identities=15% Similarity=0.169 Sum_probs=61.1
Q ss_pred HHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccc
Q 021027 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (318)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 314 (318)
+..+++++++||+++|.+| +|++||+++++++|+++++++|+++.+++++ ....+...++.++..|.+
T Consensus 24 l~~il~~~~~gi~v~D~~g---~I~~~N~a~~~~~G~~~~eviG~~~~~~~p~-~~~~~~~~l~~vl~~G~~ 91 (152)
T 3mxq_A 24 LSELLDQLSFALCIVRNDY---VIVKVNEYFESRVIFDGETMQGKNILELFPE-SADYLKRKIDTALVIESS 91 (152)
T ss_dssp HHHHHHHHCCEEEEEETTS---BEEEECHHHHHTSSSCHHHHTTSBHHHHSGG-GHHHHHHHHHHHHHHTSC
T ss_pred HHHHHhcCCCCEEEEcCCC---EEEEECHHHHHHHCcCHHHHCCCCHHHhcCC-hHHHHHHHHHHHHhcCCc
Confidence 5678999999999999998 9999999999999999999999999999876 666667779999998775
No 66
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=99.07 E-value=5.2e-11 Score=84.75 Aligned_cols=72 Identities=13% Similarity=0.111 Sum_probs=63.6
Q ss_pred hHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
..+.++++++++|+++|.++ +|+++|+++++++||++++++|+++.+++++.....+...+.++++.++++.
T Consensus 13 ~~~~il~~~~~~i~~~D~~g---~i~~~N~a~~~l~g~~~~e~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (118)
T 3fg8_A 13 GRENLYFQGGLGFMALDEDL---RIIYVNSGCLRHVRRSRDELLGRVVTEVLPETQGSYFDALCRKVLATGREQQ 84 (118)
T ss_dssp CCCCSSSCTTCEEEEECTTC---BEEEECHHHHHHHTCCHHHHTTSBHHHHCGGGTTSHHHHHHHHHHHHCCCEE
T ss_pred hHHHHHhhCCceEEEECCCC---eEEEECHHHHHHhCCCHHHHcCCcHHHHcCccchHHHHHHHHHHHHcCCceE
Confidence 35568899999999999987 9999999999999999999999999999877777777888889998887754
No 67
>4eet_B Phototropin-2; LOV, blue light photoreceptor, signaling protein, flavoprote; HET: FMN; 1.20A {Arabidopsis thaliana} PDB: 4ees_A* 4eer_A* 4eep_A* 4eeu_A* 1jnu_A* 1g28_A*
Probab=99.06 E-value=4.1e-10 Score=78.84 Aligned_cols=71 Identities=44% Similarity=0.837 Sum_probs=59.8
Q ss_pred HHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
++++++++|+++|...++++|+++|+++++++||++++++|+++..+.++.........+..++..+.++.
T Consensus 2 ~l~~~~~~i~~~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (115)
T 4eet_B 2 SPEFIEKNFVITDPRLPDNPIIFASDGFLELTEYSREEILGRNARFLQGPETDQATVQKIRDAIRDQRETT 72 (115)
T ss_dssp ---CCCCSEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEE
T ss_pred ccccCCCcEEEEcCCCCCCcEEEEcHHHHHHHCcCHHHHhCCCHHHhcCCCCChHHHHHHHHHHHcCCCcc
Confidence 46788999999999211239999999999999999999999999999988888888999999998887763
No 68
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=99.05 E-value=1.4e-09 Score=91.40 Aligned_cols=108 Identities=9% Similarity=0.037 Sum_probs=91.3
Q ss_pred CCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC-----eEEEEEEEecC
Q 021027 28 PDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-----IEVNLLNYKKD 102 (318)
Q Consensus 28 ~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 102 (318)
.+.++..+.+ |.++|+|+++..++||++++++|+++..++||++.......+...+..|.. ...++++++++
T Consensus 154 ~~fi~r~~~d---G~~~yvn~~~~~lLGY~peELiG~s~~~~vHPdD~~~~~~~~~~~l~~G~~~~~~~~s~~yR~~~kd 230 (339)
T 3rty_A 154 PKFAIRHTAT---GIISHVDSAAVSALGYLPQDLIGRSIMDFYHHEDLSVMKETYETVMKKGQTAGASFCSKPYRFLIQN 230 (339)
T ss_dssp CEEEEEEETT---CBEEEECTTHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHTTSTTCCCBCCCEEEECTT
T ss_pred ceEEEEECCC---CeEEEcChhhhcccCCCHHHHcCCcHHHEECHHHHHHHHHHHHHHHHcCCcccccccceEEEEEccC
Confidence 4567778888 999999999999999999999999999999999888777777777776654 34678889999
Q ss_pred CcEEEEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 103 GTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 103 g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
|..+|+..+..+++++.++.+..+++..+.|+....
T Consensus 231 G~~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~ 266 (339)
T 3rty_A 231 GCYVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQ 266 (339)
T ss_dssp SCEEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSS
T ss_pred CCEEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCC
Confidence 999999999999998345677788888888887654
No 69
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light photoreceptor, signal protein; HET: FMN; 2.75A {Vaucheria frigida} PDB: 3ulf_A*
Probab=99.05 E-value=4.8e-10 Score=84.38 Aligned_cols=81 Identities=40% Similarity=0.684 Sum_probs=69.2
Q ss_pred ccccchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 236 MGFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 236 ~~~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
+......+..++++++++|+++|...++++|+++|++|++++||++++++|+++..+.++.........+..++..+.++
T Consensus 30 l~~~~~~~~~~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 109 (166)
T 3ue6_A 30 LEDPDYSLVKALQMAQQNFVITDASLPDNPIVYASRGFLTLTGYSLDQILGRNCRFLQGPETDPRAVDKIRNAITKGVDT 109 (166)
T ss_dssp -CCCCCHHHHHHHHTTSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHhcCCceEEEEEccCCCCcEEEECHHHHHHhCcCHHHHcCCCHhheeCCCCCHHHHHHHHHHHhcCCce
Confidence 33445668899999999999999831224999999999999999999999999999998988899999999999888776
Q ss_pred e
Q 021027 316 T 316 (318)
Q Consensus 316 ~ 316 (318)
.
T Consensus 110 ~ 110 (166)
T 3ue6_A 110 S 110 (166)
T ss_dssp E
T ss_pred E
Confidence 4
No 70
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=99.03 E-value=2.6e-10 Score=97.19 Aligned_cols=117 Identities=8% Similarity=0.074 Sum_probs=86.0
Q ss_pred hHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEE
Q 021027 16 YTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVN 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (318)
..++++.++++++++++++|.+ |+++++|+++++++||++++++|+++..+.++. .........+..+.+....
T Consensus 6 ~~~~~~~i~~~~~~~i~~~d~~---g~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 79 (349)
T 3a0r_A 6 LRNFSESILESLETAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDLPDFE---EIGSVAESVFENKEPVFLN 79 (349)
T ss_dssp ---CCCSSGGGSSSEEEEEESS---SBCSCBCHHHHHHHSCCSTTTTTCBSTTSTTTT---HHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHhhhcCeEEEECCC---CCEEeeHHHHHHHhCCCHHHHcCcCHHHCcChh---HHHHHHHHHHhcCCceeec
Confidence 3445678999999999999999 999999999999999999999999877763322 2333344455555554332
Q ss_pred EEEEecCCcEEEEEEEEEeeccCCCCce-eEEEEEEecccccccccccc
Q 021027 96 LLNYKKDGTPFWMLFKMSLVFGKEDGRA-THFVAVQVPIVSRKHMRNSG 143 (318)
Q Consensus 96 ~~~~~~~g~~~~~~~~~~~i~~~~~g~~-~~~i~~~~DIte~k~~~~~~ 143 (318)
. ..+...|+.+...|+.+ ..+.. .+++++++|||++++++++.
T Consensus 80 ~----~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~DiTe~~~~e~~~ 123 (349)
T 3a0r_A 80 F----YKFGERYFNIRFSPFRN-AKTQLLEGVIITIDDVTELYKYEEER 123 (349)
T ss_dssp C----CCBTTBCCEEEEEEECC-TTTTSSCEEEEEEECCSTTTTTTTTT
T ss_pred c----cccCceEEEEEEEEEEc-CCCceeeEEEEEEEechHHHHHHHHH
Confidence 1 12233478888999987 66654 68999999999999985544
No 71
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=99.02 E-value=1.1e-10 Score=84.51 Aligned_cols=57 Identities=9% Similarity=0.151 Sum_probs=51.4
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHH
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTT 300 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~ 300 (318)
..+..++++++++|+++|.+| +|+++|+++++|+||++++++|+++.+++++.....
T Consensus 7 ~~l~~i~~~~~d~i~~~D~~g---~I~~~N~aa~~l~G~~~~el~G~~~~~l~~~~~~~~ 63 (129)
T 3mfx_A 7 ETIELFIQHLTEAMILVNANG---FIRSCNQRSAELLDCPQVSLKGQDWRNFLTEHHQAR 63 (129)
T ss_dssp HHHHHHHTTCSSEEEEEETTS---BEEEECHHHHHHTTSCHHHHTTSBGGGGBCTTCCGG
T ss_pred HHHHHHHhcCCceEEEECCCC---EEEeEhHHHHHHHCcCHHHHcCCcHHHHcChHhHHH
Confidence 347789999999999999997 999999999999999999999999999987776543
No 72
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=99.01 E-value=2.2e-10 Score=81.12 Aligned_cols=63 Identities=14% Similarity=0.180 Sum_probs=57.4
Q ss_pred cCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
.++.|++.|.+| +++|+|+++++++||+++|++|+++..+++|++.+.+.+.+.+++..+.++
T Consensus 8 ~~~~i~~~d~~g---~i~~~n~~~~~~~Gy~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~~~ 70 (117)
T 3f1p_A 8 SKTFLSEHSMDM---KFTYCDDRITELIGYHPEELLGRSAYEFYHALDSENMTKSHQNLCTKGQVV 70 (117)
T ss_dssp GGEEEEEECTTC---BEEEECTHHHHHHCCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHHHHSEEE
T ss_pred CccEEEEECCCc---eEEEECcChhhhhCCCHHHHcCCchhheECHHHHHHHHHHHHHHHhCCCee
Confidence 367888899887 999999999999999999999999999999999999999999998877765
No 73
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=99.01 E-value=1.8e-10 Score=81.25 Aligned_cols=104 Identities=9% Similarity=0.083 Sum_probs=78.7
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCC---ChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGF---SRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP 91 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~---~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (318)
.....++.++++++++++++|.+ |+++++|+++++++|+ +.++++|+++..+.++.. +...+..+..
T Consensus 12 ~~~~~~~~il~~~~~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~~~~~ 81 (118)
T 2w0n_A 12 TLFEQRQAMLQSIKEGVVAVDDR---GEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQVVD-------VSEVLRDGTP 81 (118)
T ss_dssp TTHHHHHHHHHCCCCCCEEEBTT---TBCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCTHH-------HHHHHHTTCC
T ss_pred HHHHHHHHHHhhccccEEEECCC---CcEeehhHHHHHHhCCCccChhhhhccCcccccCchh-------HHHHhccCce
Confidence 45667889999999999999999 9999999999999997 788999998777665431 3344444443
Q ss_pred eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
..... ...+| .|+.+...|+.+ +|.+.+++++++|||
T Consensus 82 ~~~~~--~~~~~--~~~~~~~~p~~~--~g~~~g~v~~~~DiT 118 (118)
T 2w0n_A 82 RRDEE--ITIKD--RLLLINTVPVRS--NGVIIGAISTFRDKT 118 (118)
T ss_dssp CCCCC--EESSS--CEECCCEECCCC--SSCCCCEEECCCCCC
T ss_pred eccEE--EEECC--EEEEEeeceeee--CCEEEEEEEEEEeCC
Confidence 32111 12345 367788889876 677888999999997
No 74
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=99.01 E-value=4.2e-10 Score=79.28 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=72.7
Q ss_pred cCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHH-HHHh-cCCe---EEEEEEEe
Q 021027 26 ELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIRE-AIRE-ERPI---EVNLLNYK 100 (318)
Q Consensus 26 ~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~-~~~~-~~~~---~~~~~~~~ 100 (318)
+.+++++++|.+ +|+|+++|+++++++||++++++|+++..++++..... ...+.. .... +... ..+....+
T Consensus 6 ~~~~~i~~~d~~--~g~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T 1ll8_A 6 EFNKAIFTVDAK--TTEILVANDKACGLLGYSSQDLIGQKLTQFFLRSDSDV-VEALSEEHMEADGHAAVVFGTVVDIIS 82 (114)
T ss_dssp TTTCEEEEEETT--TCBEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTTHH-HHHTTSSTTSSSSCSSCCCSSSEEECC
T ss_pred CCCceEEEEECC--CCeEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchhHH-HHHHHHHhhccCCcceeccCcEEEEEe
Confidence 345799999973 38999999999999999999999999888877654332 222111 1111 1111 22455678
Q ss_pred cCCcEEEEEEEEEeeccCCCCceeEEEEEEeccc
Q 021027 101 KDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIV 134 (318)
Q Consensus 101 ~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIt 134 (318)
++|..+|+.++..|+.+ ..+ .+++++++|++
T Consensus 83 ~dG~~~~v~~~~~~~~~-~~~--~~~v~~~~~~~ 113 (114)
T 1ll8_A 83 RSGEKIPVSVWMKRMRQ-ERR--LCCVVVLEPVE 113 (114)
T ss_dssp TTCCCEEEECCEECCBS-SSS--BEEEEEEEECC
T ss_pred cCCCEEEEEEEEEeecc-CCc--cEEEEEEeecC
Confidence 99999999999999976 333 36788888875
No 75
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=99.01 E-value=3e-10 Score=80.83 Aligned_cols=67 Identities=15% Similarity=0.148 Sum_probs=59.1
Q ss_pred HHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccc
Q 021027 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
..++++++++|+++|.+| +|+|+|+++++++||+++|++|+++.++++|++.....+.+.+++..+.
T Consensus 6 ~~~~~~~~~~i~~~d~~g---~i~~~N~~~~~~~G~~~~el~g~~~~~~~~p~d~~~~~~~~~~~~~~~~ 72 (121)
T 2kdk_A 6 GEINVKPTEFITRFAVNG---KFVYVDQRATAILGYLPQELLGTSCYEYFHQDDHNNLTDKHKAVLQSKE 72 (121)
T ss_dssp TCCCCCSSEEEEEECTTS---BEEEECTHHHHHTCCCTTTSBTSBTTTTBCSSSHHHHHHHHHHHHTSSS
T ss_pred cccccCCccEEEEECCCe---eEEEEChhHHHHHCCCHHHHcCCcHHHeeCHHHHHHHHHHHHHHHhCCC
Confidence 346778899999999987 9999999999999999999999999999999988888888888777544
No 76
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=99.01 E-value=1.7e-10 Score=81.06 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=47.6
Q ss_pred HHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHH
Q 021027 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQI 305 (318)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~ 305 (318)
.++++++++|+++|.+| +|+|+|+++++++||+++|++|+++.++++|++.+.+.+.+
T Consensus 3 ~lle~~~d~i~v~d~~G---~i~yvn~~~~~~lGy~~~el~G~~~~~~ihp~D~~~~~~~~ 60 (111)
T 2vlg_A 3 FPLQTKTDIHAVLASNG---RIIYISANSKLHLGYLQGEMIGSFLKTFLHEEDQFLVESYF 60 (111)
T ss_dssp ------CCEEEEECTTS---BEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHH
T ss_pred chhhcCCCEEEEEcCCC---eEEEEChHHHHHhCCCHHHHcCCcHHHeECHhHHHHHHHHH
Confidence 36788899999999887 99999999999999999999999999999999877765544
No 77
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=99.01 E-value=8.7e-09 Score=69.01 Aligned_cols=95 Identities=9% Similarity=0.110 Sum_probs=70.0
Q ss_pred CCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCCcEE
Q 021027 27 LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDGTPF 106 (318)
Q Consensus 27 ~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 106 (318)
++++++++|.+ ++++++|+++++++|++.++++|+++..+ +. .......+...+..+...... .. ++...
T Consensus 1 ~~~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ 70 (96)
T 3a0s_A 1 METAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLKDL--PD-FEEIGSVAESVFENKEPVFLN--FY--KFGER 70 (96)
T ss_dssp CCCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGGGS--TT-CHHHHHHHHHHHHHTCCEEEE--EE--EETTE
T ss_pred CCceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHHHC--cc-hHHHHHHHHHHhccCCeEEEE--EE--cCCcE
Confidence 46899999999 99999999999999999999999987766 22 233344455556666555332 22 33446
Q ss_pred EEEEEEEeeccCCCCc-eeEEEEEEec
Q 021027 107 WMLFKMSLVFGKEDGR-ATHFVAVQVP 132 (318)
Q Consensus 107 ~~~~~~~~i~~~~~g~-~~~~i~~~~D 132 (318)
|+.++..|+.+ .+|. +.+++++++|
T Consensus 71 ~~~~~~~p~~~-~~~~~~~g~v~~~~D 96 (96)
T 3a0s_A 71 YFNIRFSPFRN-AKTQLLEGVIITIDD 96 (96)
T ss_dssp EEEEEEEEEEC-TTTCCEEEEEEEEEC
T ss_pred EEEEEEEEeEc-CCCCeeeEEEEEecC
Confidence 88999999987 5554 5788888776
No 78
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=99.00 E-value=7.9e-09 Score=73.01 Aligned_cols=100 Identities=15% Similarity=0.081 Sum_probs=75.4
Q ss_pred HHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCc-ccCCCCChHHHHHHHHHHHhcCCeEEEEEE-
Q 021027 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (318)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 98 (318)
..++++++.|++++|.+ ++|++||.+++++.|+++++++|+++.. +.+......+...+...+..+. ......+
T Consensus 25 ~~~ld~l~~GiivlD~d---g~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~-l~~~~~yv 100 (129)
T 1mzu_A 25 TAEFDALPVGAIQVDGS---GVIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT-LDARFDFV 100 (129)
T ss_dssp CTTGGGCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CeEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 34699999999999999 9999999999999999999999999765 4444566667778888888666 4444433
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEE
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i 127 (318)
.+.+|.+..+.++.. .. .++...+++
T Consensus 101 ~~~~~~p~~v~i~l~--~~-~~~~~~~i~ 126 (129)
T 1mzu_A 101 FDFQMAPVRVQIRMQ--NA-GVPDRYWIF 126 (129)
T ss_dssp EECSSCEEEEEEEEE--EC-SSTTEEEEE
T ss_pred EcCCCCEEEEEEEEE--Ec-CCCCEEEEE
Confidence 478888666555544 44 566655543
No 79
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.99 E-value=1.1e-09 Score=84.74 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=79.7
Q ss_pred hhHHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcC-C-e
Q 021027 15 RYTLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREER-P-I 92 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~-~ 92 (318)
+....++.++++++++++++|.+ |+++++|+++++++|++.++++|+++..+.++... ...+..+. . .
T Consensus 77 ~~~~~l~~il~~~~~gvi~~D~~---g~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~~-------~~~~~~~~~~~~ 146 (190)
T 2jhe_A 77 REHLALSALLEALPEPVLSVDMK---SKVDMANPASCQLFGQKLDRLRNHTAAQLINGFNF-------LRWLESEPQDSH 146 (190)
T ss_dssp HHHHHHHHHHHHCSSCEEEECTT---CBEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCCH-------HHHHHTCCCSCE
T ss_pred HHHHHHHHHHHhCCCcEEEEcCC---CCEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCCH-------HHHHhcCCCCCc
Confidence 34567899999999999999999 99999999999999999999999988777655321 12333333 2 2
Q ss_pred EEEEEEEecCCcEEEEEEEEEeeccCCCCc----eeEEEEEEeccccccc
Q 021027 93 EVNLLNYKKDGTPFWMLFKMSLVFGKEDGR----ATHFVAVQVPIVSRKH 138 (318)
Q Consensus 93 ~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~----~~~~i~~~~DIte~k~ 138 (318)
..+.. .+|. ++.+...|+.+ .++. +.|++.+++|||++++
T Consensus 147 ~~~~~---~~g~--~~~~~~~pi~~-~~~~~~~~~~g~v~~~~DiTe~~~ 190 (190)
T 2jhe_A 147 NEHVV---INGQ--NFLMEITPVYL-QDENDQHVLTGAVVMLRSTIRMGR 190 (190)
T ss_dssp EEEEE---ETTE--EEEEEEEEETT-TTEEEEEEEE-HHHHHHHHTTTCC
T ss_pred ceEEE---ECCe--EEEEEEEEEEe-cCCCCcceEEeEEEEEeccchhcC
Confidence 22222 2564 45677889876 4555 6788888999999864
No 80
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.99 E-value=1.4e-08 Score=71.59 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=76.1
Q ss_pred HHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCc-ccCCCCChHHHHHHHHHHHhcCCeEEEEEE-
Q 021027 21 HEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQGPRTNRRTIMEIREAIREERPIEVNLLN- 98 (318)
Q Consensus 21 ~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 98 (318)
..++++++.|++++|.+ ++|+++|.+++++.|+++++++|+++.. +.+......+...+...+..+. ......+
T Consensus 20 ~~~ld~l~~Gii~lD~~---g~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~-l~~~~~~v 95 (125)
T 1nwz_A 20 DGQLDGLAFGAIQLDGD---GNILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN-LNTMFEYT 95 (125)
T ss_dssp HHHHTTCSSEEEEEETT---CBEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC-CEEEEEEE
T ss_pred HHHHhccCceEEEECCC---CEEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc-eeEEEEEE
Confidence 45799999999999999 9999999999999999999999999765 4444566677777888888666 4444433
Q ss_pred EecCCcEEEEEEEEEeeccCCCCceeEEE
Q 021027 99 YKKDGTPFWMLFKMSLVFGKEDGRATHFV 127 (318)
Q Consensus 99 ~~~~g~~~~~~~~~~~i~~~~~g~~~~~i 127 (318)
.+.+|.+..+.++.. .. .+|...+++
T Consensus 96 ~~~~~~p~~v~i~l~--~~-~~~~~~~i~ 121 (125)
T 1nwz_A 96 FDYQMTPTKVKVHMK--KA-LSGDSYWVF 121 (125)
T ss_dssp ECTTSCCEEEEEEEE--EC-SSSSEEEEE
T ss_pred EcCCCCEEEEEEEEE--Ec-CCCCEEEEE
Confidence 488888666555554 44 566655543
No 81
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=98.98 E-value=1.3e-09 Score=76.13 Aligned_cols=68 Identities=7% Similarity=0.091 Sum_probs=58.7
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
+..++.++++++++|+++|.++ +|+++|+++++++||++++++|+++.+++ |++.......+..++..
T Consensus 2 e~~~~~~~~~~~~~i~~~d~~g---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 69 (114)
T 3luq_A 2 DERLRLFTEHAPAALAMFDREM---RYLAVSRRWREDYGLGDGDILGMSHYDIF-PEIGEEWKSVHRRGLAG 69 (114)
T ss_dssp CHHHHHHHHTCSSEEEEEETTC---BEEEECHHHHHHTTCCSSCCTTCBHHHHC-TTCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHhcCCceEEEEcCCc---EEEEECHHHHHHHCCCHHHHcCCcHHHHC-CccHHHHHHHHHHHhcC
Confidence 3468889999999999999887 99999999999999999999999999987 77777666666666653
No 82
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A {Brucella melitensis}
Probab=98.98 E-value=9.7e-10 Score=78.80 Aligned_cols=71 Identities=44% Similarity=0.780 Sum_probs=62.1
Q ss_pred HHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
++++++++|+++|..+++++|+++|+++++++||+.++++|+++..+.++.........+..++..+.++.
T Consensus 2 ~~~~~~~~i~~~d~~~~~g~i~~~N~~~~~l~g~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (128)
T 3t50_A 2 ASEFTLMPMLITNPHLPDNPIVFANPAFLKLTGYEADEVMGRNCRFLQGHGTDPAHVRAIKSAIAAEKPID 72 (128)
T ss_dssp CCCCCSSCEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCEE
T ss_pred ccccCcccEEEecCCCCCCcEEEEcHHHHHHhCcCHHHHcCCCHhhhcCCccCHHHHHHHHHHHHcCCCce
Confidence 46788999999999322349999999999999999999999999999988888999999999998887663
No 83
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=98.96 E-value=6.3e-10 Score=79.01 Aligned_cols=58 Identities=24% Similarity=0.230 Sum_probs=46.6
Q ss_pred cCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHh
Q 021027 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQ 310 (318)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~ 310 (318)
++++|+++|.+| +|++||+++++|+||+++|++|+++..+.++.........+.....
T Consensus 2 ~~d~i~~~d~~g---~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~ 59 (119)
T 2vv6_A 2 IPDAMIVIDGHG---IIQLFSTAAERLFGWSELEAIGQNVNILMPEPDRSRHDSYISRYRT 59 (119)
T ss_dssp CCCEEEEEETTS---BEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTHHHHHHHHHHHHHH
T ss_pred CcceEEEECCCC---eEEEEhHHHHHHhCCCHHHHcCCCHHHhCCchHHHHHHHHHHHHhc
Confidence 589999999997 9999999999999999999999999988766554433334444433
No 84
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=98.95 E-value=4.7e-10 Score=79.79 Aligned_cols=70 Identities=10% Similarity=0.134 Sum_probs=55.7
Q ss_pred hHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCC-HHHHHHHHHHHhcccce
Q 021027 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD-TTVLYQIKESIQTEQAC 315 (318)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~-~~~~~~~~~~l~~~~~~ 315 (318)
.++.++++++++|++ +.++ +|++||++|++|+||++++++|+++..+.++... ......+...+..+.++
T Consensus 4 ~~~~~~~~~~~~i~~-~~~g---~i~~~N~a~~~l~G~~~~el~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (120)
T 3mqq_A 4 DYKTAFHLAPIGLVL-SRDR---VIEDCNDELAAIFRCARADLIGRSFEVLYPSSDEFERIGERISPVMIAHGSY 74 (120)
T ss_dssp CHHHHHHHCSSEEEE-EETT---EEEEECHHHHHHTTSCHHHHTTCBGGGGSSSHHHHHHHHHHHHHHHHHHSCE
T ss_pred hHHHHHhcCCceEEE-ecCC---EEHHHHHHHHHHhCcCHHHhCCCchhhccCChhhHHHHHHHHHHHHhcCCcc
Confidence 377899999999975 5565 9999999999999999999999999888754332 45556666777766655
No 85
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=98.91 E-value=1.4e-09 Score=77.83 Aligned_cols=50 Identities=18% Similarity=0.062 Sum_probs=44.2
Q ss_pred hHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccc--cCCCcccccC
Q 021027 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV--VGQNCRFLNG 294 (318)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el--~G~~~~~l~~ 294 (318)
.++.++++++++|+++|.+| +|++||+++++++||+++|+ +|+++..+.+
T Consensus 18 ~~~~l~e~~~~~i~~~d~~g---~i~~~N~a~~~~~G~~~~el~g~g~~~~~~~~ 69 (126)
T 3bwl_A 18 RLEALFENSPDMIDVLDADG---TICEVNQRFCAELGYDESEVLGRSIWEFDLMF 69 (126)
T ss_dssp HHHHHHHHCSSEEEEECTTC---BEEEECHHHHHHHTCCGGGTTTSBGGGTBTTC
T ss_pred HHHHHHhhCCcEEEEEcCCC---CEEEEcHHHHHHhCCCHHHHhhCCCchhhccC
Confidence 36778999999999999987 99999999999999999999 5677777764
No 86
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=98.90 E-value=2.1e-08 Score=83.43 Aligned_cols=106 Identities=8% Similarity=0.037 Sum_probs=86.4
Q ss_pred CeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC---eEEEEEEEecCCcE
Q 021027 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP---IEVNLLNYKKDGTP 105 (318)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~ 105 (318)
..+...+.+ |+++|+|+++..++||.+++++|+++..++||++.......+...+..+.. ...+++++++||..
T Consensus 175 ~Fitrh~~d---G~~~yvs~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~~~~~f~s~~yR~~~kdG~~ 251 (317)
T 4dj3_A 175 IFTTTHTPG---CVFLEVDERAVPLLGYLPQDLIGTSILTYLHPEDRPLMVAIHQKVLKYAGHPPFEHSPVRFCTQNGEY 251 (317)
T ss_dssp EEEEEECTT---SBEEEECTTHHHHHSCCHHHHTTSBGGGGBCTTTTTHHHHHHHHHHHTTTSCCEECCCEEEECTTSCE
T ss_pred ceEEEecCC---CeEEEEChHHhhhcCcChHHHcCCCHHHeECHHHHHHHHHHHHHHHHcCCCccccceEEEEEccCCCE
Confidence 455667778 999999999999999999999999999999999988887777787776554 34678889999999
Q ss_pred EEEEEEEEeeccCCCCceeEEEEEEecccccc
Q 021027 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (318)
Q Consensus 106 ~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k 137 (318)
+|+.....++.++.++.+..+++...-++...
T Consensus 252 vwvet~~~~~~np~s~~~e~II~~h~v~~~p~ 283 (317)
T 4dj3_A 252 VILDSSWSSFVNPWSRKVSFIIGRHKVRTSPL 283 (317)
T ss_dssp EEEEEEEEEEECSSSCCEEEEEEEEEECCCCS
T ss_pred EEEEEEEEEEECCCCCcccEEEEEEEeccCCC
Confidence 99999999998734566667777666555443
No 87
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=98.89 E-value=8.6e-10 Score=78.65 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=49.1
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccc
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
+..++.++++++++|+++|.+| +|+++|+++++++||++++++|+++.++.++................+.
T Consensus 18 ~~~~~~i~~~~~~~i~~~d~~g---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (125)
T 3fc7_A 18 RKKFESLVSDSPDGIVHLTTNG---TILSVNPSMAGRLGADPDTLVGQQLSAVMDSEAANQRLEAGKSAVENGT 88 (125)
T ss_dssp --------CCSCCEEEEEETTS---BEEEECHHHHHHHTSCHHHHTTSBGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCeEEEEcCCC---eEEEECHHHHHHhCCCHHHHcCccHHHhCCHHHHHHHHHHHHHHhcCCC
Confidence 4457889999999999999997 9999999999999999999999999998833222222222344554443
No 88
>1nwz_A PYP, photoactive yellow protein; PAS, LOV, GAF, domains fold, signaling protein; HET: HC4; 0.82A {Halorhodospira halophila} SCOP: d.110.3.1 PDB: 1kou_A* 1ot9_A* 1otb_A* 1s4r_A* 1s4s_A* 1ts0_A* 1ts6_A* 1ts7_A* 1ts8_A* 1uwn_X* 1uwp_X* 2d01_A* 2phy_A* 2pyp_A* 2pyr_A* 2qj5_A* 2qj7_A* 2qws_A* 2zoh_A* 2zoi_A* ...
Probab=98.88 E-value=2.2e-09 Score=75.79 Aligned_cols=66 Identities=17% Similarity=0.138 Sum_probs=57.4
Q ss_pred HHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccc-cCCCCCHHHHHHHHHHHhccc
Q 021027 245 ISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 245 ~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l-~~~~~~~~~~~~~~~~l~~~~ 313 (318)
.++++++.|+++.|.++ +|++||+++++++||++++++|+++.+. .+....+.+...+.+.+++|.
T Consensus 21 ~~ld~l~~Gii~lD~~g---~I~~~N~~~e~~sG~~~~eviGk~~f~~~~~~~~~~~f~~rf~~~~~~g~ 87 (125)
T 1nwz_A 21 GQLDGLAFGAIQLDGDG---NILQYNAAEGDITGRDPKQVIGKNFFKDVAPCTDSPEFYGKFKEGVASGN 87 (125)
T ss_dssp HHHTTCSSEEEEEETTC---BEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHHTC
T ss_pred HHHhccCceEEEECCCC---EEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc
Confidence 46899999999999997 9999999999999999999999999764 444577788888888888665
No 89
>1mzu_A PPR; photoactive yellow protein, PAS, PYP, signaling protein; HET: HC4; 2.00A {Rhodospirillum centenum} SCOP: d.110.3.1
Probab=98.86 E-value=2.4e-09 Score=75.67 Aligned_cols=65 Identities=9% Similarity=0.054 Sum_probs=57.1
Q ss_pred HHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccc-cCCCCCHHHHHHHHHHHhccc
Q 021027 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFL-NGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l-~~~~~~~~~~~~~~~~l~~~~ 313 (318)
++++++.||++.|.++ +|++||+++++++||++++++|+++... .+....+.+...+.+.+++|.
T Consensus 27 ~ld~l~~GiivlD~dg---~I~~~N~~~e~isG~s~eeviGk~~f~~~~p~~~~~~f~grf~~~~~~G~ 92 (129)
T 1mzu_A 27 EFDALPVGAIQVDGSG---VIHRYNRTESRLSGRIPERVIGRNFFTEVAPCTNIPAFSGRFMDGVTSGT 92 (129)
T ss_dssp TGGGCSSEEEEEETTC---BEEEECHHHHHHHCCCHHHHTTSBCCCCCCGGGCSTTTHHHHHHHHHTSC
T ss_pred HHhccCceEEEECCCC---eEEEEHHHHHHHhCCCHHHHcCCchhhhccchhcccHHHHHHHHHHhcCc
Confidence 6889999999999997 9999999999999999999999999764 444577888888888888665
No 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=98.86 E-value=4.1e-09 Score=89.11 Aligned_cols=73 Identities=44% Similarity=0.861 Sum_probs=63.8
Q ss_pred HHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
..++++++++|+++|...++|+|++||++|++++||+++|++|+++.++.+|.+.....+.+.+++..+.++.
T Consensus 14 ~~~~~~~~~~i~~~D~~~~~g~i~~~N~a~~~l~G~~~~el~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 86 (332)
T 2wkq_A 14 ATTLERIEKNFVITDPRLPDNPIIFASDSFLQLTEYSREEILGRNARFLQGPETDRATVRKIRDAIDNQTEVT 86 (332)
T ss_dssp CCCGGGCCSEEEEECTTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTCCHHHHHHHHHHHHTTCCEE
T ss_pred HhHhhcCCCcEEEecCCCCCCCEEEeehHHHHHhCCCHHHHcCCCchhhcCCCCCHHHHHHHHHHHHcCCeeE
Confidence 3467889999999999222349999999999999999999999999999998999999999999999888764
No 91
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=98.85 E-value=2.3e-09 Score=75.48 Aligned_cols=50 Identities=14% Similarity=0.238 Sum_probs=45.8
Q ss_pred HHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCC
Q 021027 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (318)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~ 295 (318)
++.++++++++|+++|.+| +|+++|+++++++||++++++|+++.++.++
T Consensus 15 ~~~~~~~~~~~i~~~d~~g---~i~~~N~~~~~l~G~~~~el~g~~~~~~~~~ 64 (118)
T 3olo_A 15 AHYLINNAVEASFCLGDNW---QFLYVNDATCRMTEYSREQLLSMNLQDIDVD 64 (118)
T ss_dssp HHHHHHHCSSEEEEECTTS---BEEEECHHHHHHHCCCHHHHTTCBGGGTBTT
T ss_pred HHHHHhcCCceEEEECCCC---cEEEEHHHHHHHHCCCHHHHhCCChhhcccc
Confidence 5668899999999999887 9999999999999999999999999988744
No 92
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=98.85 E-value=5.9e-09 Score=73.37 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=63.8
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
..+..++++++++++++|.++ .|+++|+++++++|++.++++|+++..+.++.........+..++..+.++.
T Consensus 7 ~~~~~~~~~~~~~i~~~d~~~---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (124)
T 3lyx_A 7 KQRAKAFDYVFDAIVVTDLQG---FIIDWNKGSETLYGYSKEQAIGQPVNMLHVPGDTEHITSEVISAVENQGKWT 79 (124)
T ss_dssp HHHHHGGGTCSSEEEEEETTC---BEEEECHHHHHHHCCCHHHHTTSBGGGGSCTTTHHHHHHHHHHHHHHTSCEE
T ss_pred HHHHHHHhhcCceEEEECCCC---cEeehhhHHHHHhCCCHHHHcCCCHHHhcCcchhhHHHHHHHHHHHcCCccc
Confidence 457889999999999999987 9999999999999999999999999977777777777778888888877653
No 93
>2z6d_A Phototropin-2; PAS-fold, LOV-fold, alternative splicing, ATP-binding, chromophore, flavoprotein, FMN, kinase, membrane, nucleotide-binding; HET: FMN; 2.00A {Arabidopsis thaliana} PDB: 2z6c_A*
Probab=98.84 E-value=8.6e-09 Score=73.09 Aligned_cols=73 Identities=42% Similarity=0.840 Sum_probs=64.3
Q ss_pred chhHHHHHhccCCcEEEec---CCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 240 SSSLYISLGRIKQSFVLID---PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d---~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
+..+..++++++++++++| .++ .|+++|+++++++||+.++++|+++..+.++.........+..++..+.++
T Consensus 5 ~~~~~~~~~~~~~~i~~~d~~d~~~---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (130)
T 2z6d_A 5 SQELKTALSTLQQTFVVSDATQPHC---PIVYASSGFFTMTGYSSKEIVGRNCRFLQGPDTDKNEVAKIRDCVKNGKSY 80 (130)
T ss_dssp --CHHHHHHHTTCEEEEEETTSTTC---CEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHhcccceeeeeccCCCC---cEEEecHHHHHHhCcCHHHHcCCChhhccCCCCCchHHHHHHHHHHcCCcc
Confidence 4457889999999999999 666 999999999999999999999999999998888888888888888877665
No 94
>3k3c_A Protein RV1364C/MT1410; sensor, PAS, signal transduction, fatty-acid binding, sigma regulator, signaling protein; HET: PLM; 1.62A {Mycobacterium tuberculosis} PDB: 3k3d_A
Probab=98.81 E-value=3.6e-09 Score=79.01 Aligned_cols=70 Identities=16% Similarity=0.150 Sum_probs=62.1
Q ss_pred hhHHHHHhccCCcEEEec-CCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 241 SSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d-~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
..++.++++++++|+++| .++ +|+++|+++++++||+ +++|+++.+++++.........+.+++++|+++
T Consensus 17 ~~~~~~~~~~~~~i~~~d~~~~---~i~~~N~~~~~~~g~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 87 (158)
T 3k3c_A 17 EDVRRIFEHIPAILVGLEGPDH---RFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQ 87 (158)
T ss_dssp HHHHHHHHHCSSEEEEEETTTT---EEEEECHHHHHHCTTC--CSTTSBHHHHSGGGGGTTHHHHHHHHHHHCCCE
T ss_pred HHHHHHHhcCCceEEEEECCCc---EeHHHHHHHHHHcCCc--hhcCCcHHHhCCchhHHHHHHHHHHHHHhCCcc
Confidence 458889999999999999 886 9999999999999999 999999999988777667788888898888764
No 95
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=98.80 E-value=4.8e-08 Score=81.01 Aligned_cols=105 Identities=8% Similarity=0.030 Sum_probs=86.8
Q ss_pred eEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCC-eE-EEEEEEecCCcEEE
Q 021027 30 SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERP-IE-VNLLNYKKDGTPFW 107 (318)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~g~~~~ 107 (318)
.+...+.+ |+++|+|+++..++||.+++++|+++..++||++.......+.+.+..+.. .. ..+++++++|..+|
T Consensus 167 Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~iHpdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~vw 243 (309)
T 3gdi_A 167 FTTTHTPN---CLFQAVDERAVPLLGYLPQDLIETPVLVQLHPSDRPLMLAIHKKILQAGGQPFDYSPIRFRTRNGEYIT 243 (309)
T ss_dssp EEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBHHHHBCTTSHHHHHHHHHHHHHTTTCCEEEEEEEEECTTSCEEE
T ss_pred EEEEecCC---CeEEEECcccccccCcCHHHHcCCCHHHhCCHHHHHHHHHHHHHHHhcCCceeeceEEEEEccCCCEEE
Confidence 55667788 999999999999999999999999988899999887777777777775443 44 58899999999999
Q ss_pred EEEEEEeeccCCCCceeEEEEEEecccccc
Q 021027 108 MLFKMSLVFGKEDGRATHFVAVQVPIVSRK 137 (318)
Q Consensus 108 ~~~~~~~i~~~~~g~~~~~i~~~~DIte~k 137 (318)
+.....++.++.++++..+++...-++...
T Consensus 244 vet~~~~~~np~s~~~e~ii~~h~v~~gp~ 273 (309)
T 3gdi_A 244 LDTSWSSFINPWSRKISFIIGRHKVRVGPL 273 (309)
T ss_dssp EEEEEEEEECTTTCCEEEEEEEEEEEECCS
T ss_pred EEEEEEEEECCCCCcccEEEEEEEEccCCC
Confidence 999998888734677878888877776643
No 96
>3nja_A Probable ggdef family protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.37A {Chromobacterium violaceum}
Probab=98.79 E-value=4.7e-09 Score=74.45 Aligned_cols=74 Identities=9% Similarity=-0.030 Sum_probs=56.1
Q ss_pred cchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccC--CCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 239 ISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVG--QNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 239 ~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G--~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
.+..++.++++++++++++|.++ .++++|+++++++||++++++| ..+..+++|++.+.+...+..+++.+.++
T Consensus 5 ~~~~l~~~~~~~~~~i~~~d~~~---~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 80 (125)
T 3nja_A 5 AEKLLHTAESDAGIGSWVLHMES---GRLEWSQAVHDIFGTDSATFDATEDAYFQRVHPDDRARVRRELDRHVLGDRPF 80 (125)
T ss_dssp ------------CCEEEEEETTT---TEEEECHHHHHHHTCCTTTCCCBHHHHHHHBCTTTHHHHHHHHHHHHHSCCCE
T ss_pred HHHHHHHHHHhCCeeEEEEEcCC---CcEEECHHHHHHhCCCcccccccHHHHHhhcChhHHHHHHHHHHHHHhcCCCc
Confidence 34567889999999999999997 9999999999999999999999 56677888999998889999998888765
No 97
>3mr0_A Sensory box histidine kinase/response regulator; PAS fold, structural genomics, PSI-2; HET: PG5; 1.49A {Burkholderia thailandensis}
Probab=98.79 E-value=1.3e-08 Score=74.62 Aligned_cols=77 Identities=17% Similarity=0.250 Sum_probs=63.5
Q ss_pred cccchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCC--CcccccCCCCCHHHHHHHHHHHhcccc
Q 021027 237 GFISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQ--NCRFLNGVDTDTTVLYQIKESIQTEQA 314 (318)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~--~~~~l~~~~~~~~~~~~~~~~l~~~~~ 314 (318)
...+.+++.+++.++++++.+|..+ .++++|+++++++||+++++.+. .+..+++|++.+.+...+..++..+.+
T Consensus 5 ~~se~rl~~~~~~~~~g~w~~d~~~---~~~~~s~~~~~~~G~~~~~~~~~~~~~~~~ihpdD~~~~~~~~~~~~~~~~~ 81 (142)
T 3mr0_A 5 SASEERFQLAVSGASAGLWDWNPKT---GAMYLSPHFKKIMGYEDHELPDEITGHRESIHPDDRARVLAALKAHLEHRDT 81 (142)
T ss_dssp ----CCHHHHHHHTTCEEEEECTTT---CCEEECHHHHHHTTCCGGGSCSEEC---CCBCTTTHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhCCcEEEEEEcCC---CeEEECHHHHHHhCCCccccCCCHHHHHhhcCHHHHHHHHHHHHHHHhCCCc
Confidence 4456679999999999999999987 89999999999999999999873 567789999999999999999988876
Q ss_pred ee
Q 021027 315 CT 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 82 ~~ 83 (142)
T 3mr0_A 82 YD 83 (142)
T ss_dssp EE
T ss_pred eE
Confidence 54
No 98
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=98.78 E-value=3.5e-08 Score=82.21 Aligned_cols=107 Identities=9% Similarity=0.044 Sum_probs=86.9
Q ss_pred CeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHh-cCCe-EEEEEEEecCCcEE
Q 021027 29 DSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE-ERPI-EVNLLNYKKDGTPF 106 (318)
Q Consensus 29 ~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~g~~~ 106 (318)
..+...+.+ |+++|+|+++..++||.++|++|+++..+++|++.......+...+.. +... ..++++++++|..+
T Consensus 177 ~Fitrh~~d---G~~~yvd~~~~~lLGY~peELig~s~~~~vHPdD~~~~~~~~~~~l~~~g~~~~~~~yR~~~kdG~~v 253 (320)
T 4dj2_A 177 IFTTRHTPS---CLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYV 253 (320)
T ss_dssp EEEEEECTT---CBEEEECTTHHHHHSCCHHHHTTSBGGGGBCGGGHHHHHHHHHHHTTSSSCCEECCCEEEECSSSCEE
T ss_pred eEEEEecCC---ceEEEcCcceeccCCcChHHHcCCcHHHhCCHHHHHHHHHHHHHHHhcCCCcccceEEEEEccCCCEE
Confidence 345667788 999999999999999999999999999999999877766666666664 3344 35788899999999
Q ss_pred EEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 107 WMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 107 ~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
|+.....++.++.++++..+++...-++....
T Consensus 254 wvet~~~~~~np~s~~~e~II~~h~v~~gp~~ 285 (320)
T 4dj2_A 254 TMDTSWAGFVHPWSRKVAFVLGRHKVRTAPLN 285 (320)
T ss_dssp EEECEEEEEECTTTCSEEEEEEEEEESSCCSS
T ss_pred EEEEEEEEEECCCCCCccEEEEEEEEccCCCC
Confidence 99999988887346788888888877776543
No 99
>2v0u_A NPH1-1, LOV2; kinase, transferase, ATP-binding, serine/threonine-protein kinase, light-induced signal trans phototropin1, nucleotide-binding; HET: FMN; 1.40A {Avena sativa} PDB: 2v0w_A* 2v1b_A* 2v1a_A* 1jnu_A* 1g28_A*
Probab=98.78 E-value=1.2e-08 Score=74.15 Aligned_cols=70 Identities=43% Similarity=0.875 Sum_probs=63.4
Q ss_pred HHHHHhccCCcEEEecC---CCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 243 LYISLGRIKQSFVLIDP---HLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 243 l~~~~~~~~~~i~i~d~---~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
+..++++++++++++|. ++ .|+++|+++++++||+.++++|+++..+.++.........+..++..+.++
T Consensus 4 l~~~~~~~~~~i~~~d~~~~~~---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (146)
T 2v0u_A 4 LATTLERIEKNFVITDPRLPDN---PIIFASDSFLQLTEYSREEILGRNCRFLQGPETDRATVRKIRDAIDNQTEV 76 (146)
T ss_dssp CCCTGGGSSSCEEEECTTSTTC---CEEEECHHHHHHHCCCHHHHTTSCGGGGCCTTSCHHHHHHHHHHHHTTCCE
T ss_pred HHHHHhcCCCcEEEEcCCCCCc---eEEEEcHHHHHHHCcCHHHHcCCCHHHhcCCcCChHHHHHHHHHHhcCCCc
Confidence 55678999999999998 66 999999999999999999999999999998988888889999988887765
No 100
>1ll8_A PAS kinase; PAS domain, ligand binding, ligand screening, kinase regulation, transferase; NMR {Homo sapiens} SCOP: d.110.3.5
Probab=98.77 E-value=8.8e-09 Score=72.36 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=41.6
Q ss_pred cCCcEEEecCC-CCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCC
Q 021027 250 IKQSFVLIDPH-LPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTD 298 (318)
Q Consensus 250 ~~~~i~i~d~~-~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~ 298 (318)
.+++|+++|.+ | +|+++|+++++|+||+++|++|+++.+++++...
T Consensus 7 ~~~~i~~~d~~~g---~I~~~N~aa~~l~G~~~~el~g~~~~~l~~~~~~ 53 (114)
T 1ll8_A 7 FNKAIFTVDAKTT---EILVANDKACGLLGYSSQDLIGQKLTQFFLRSDS 53 (114)
T ss_dssp TTCEEEEEETTTC---BEEEECTTHHHHHTCCTTTTTTSBGGGGSSCTTT
T ss_pred CCceEEEEECCCC---eEEEehHHHHHHhCCCHHHHcCCCHHHhcCcchh
Confidence 46799999988 7 9999999999999999999999999999877644
No 101
>3d72_A Vivid PAS protein VVD; circadian, photoreceptor, blue-light, LOV, signaling protein; HET: FAD; 1.65A {Neurospora crassa} PDB: 3is2_A* 2pd8_A* 3hjk_A* 2pdr_A* 2pd7_A* 2pdt_A* 3hji_A* 3rh8_B*
Probab=98.76 E-value=1.2e-08 Score=75.13 Aligned_cols=70 Identities=36% Similarity=0.698 Sum_probs=56.1
Q ss_pred HHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCC-----------CHHHHHHHHHHHhcccc
Q 021027 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT-----------DTTVLYQIKESIQTEQA 314 (318)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~-----------~~~~~~~~~~~l~~~~~ 314 (318)
++++ +++|+++|...++++|+++|+++++++||+++|++|+++..+.++.. .......+..++..+.+
T Consensus 31 ~~~~-~~~i~~~d~~d~~g~i~~~N~a~~~l~G~~~~el~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (149)
T 3d72_A 31 PVDT-SVALILCDLKQKDTPIVYASEAFLYMTGYSNAEVLGRNCRFLQSPDGMVKPKSTRKYVDSNTINTMRKAIDRNAE 109 (149)
T ss_dssp SCCT-TSCEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCGGGGGSTTSCCCTTCCCSSSCHHHHHHHHHHHHHTCC
T ss_pred hhcC-CccEEEEeccCCCCcEEEECHHHHHHHCcCHHHHcCCChhHhCCccccccccccccccChHHHHHHHHHHHCCCc
Confidence 3444 48999998322224999999999999999999999999999887764 77778888888887776
Q ss_pred ee
Q 021027 315 CT 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 110 ~~ 111 (149)
T 3d72_A 110 VQ 111 (149)
T ss_dssp EE
T ss_pred eE
Confidence 53
No 102
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=98.75 E-value=3.9e-09 Score=75.17 Aligned_cols=67 Identities=16% Similarity=0.188 Sum_probs=57.7
Q ss_pred HHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccc
Q 021027 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
+.++++++++|+++|.+| +|+++|+++++++||+.++++|+++.++.++.+.......+...+..+.
T Consensus 2 ~~l~~~~~~~i~~~d~~g---~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (126)
T 3mjq_A 2 KNFLETIEDMILIINREG---RLLYANTAVPKKLGYTHEELMSMHILTITSAGKMAEGEKILAELFAGKK 68 (126)
T ss_dssp CTTGGGCSSEEEEEETTS---BEEEECTHHHHHHSCCHHHHHHSBHHHHHCTTCHHHHHHHHHHHHHTCC
T ss_pred hhHHhhCCceEEEEeCCC---cEEEEcHHHHHHHCCCHHHHcCCCHHHHcCchhHHHHHHHHHHHHhCCC
Confidence 457888999999999987 9999999999999999999999999999988777777777776665443
No 103
>3kx0_X Uncharacterized protein RV1364C/MT1410; PAS domain, sensory domain, mycobacteium tuberculos molecule binding domain; 2.30A {Mycobacterium tuberculosis}
Probab=98.75 E-value=7.5e-09 Score=79.72 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=62.0
Q ss_pred chhHHHHHhccCCcEEEec-CCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 240 SSSLYISLGRIKQSFVLID-PHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d-~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
...++.++++++++|+++| .++ +|+++|+++++++||+ +++|+++.+++++.........+..++++|+++
T Consensus 36 ~~~l~~l~~~~~~~i~~~d~~~g---~i~~~N~a~~~l~G~~--~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 107 (185)
T 3kx0_X 36 AEDVRRIFEHIPAILVGLEGPDH---RFVAVNAAYRGFSPLL--DTVGQPAREVYPELEGQQIYEMLDRVYQTGEPQ 107 (185)
T ss_dssp HHHHHHHHHHCSSEEEEEETTTT---EEEEECHHHHHHCCCC--SCTTSBHHHHCTTSCSSSSHHHHHHHHHHCCCE
T ss_pred HHHHHHHHhcCCceEEEEECCCc---EEEEEcHHHHHHcCCc--cccCCcHHHHCCchhhhhHHHHHHHHHHcCCcc
Confidence 3458889999999999999 887 9999999999999999 999999999987777666777888888777764
No 104
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling protein; HET: FMN; 2.63A {Pseudomonas putida}
Probab=98.70 E-value=1.5e-08 Score=75.77 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=66.8
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
...+..++++++++|+++|.++.+++|+++|+++++++||+.++++|+++..+.++.........+..++..+.++.
T Consensus 24 ~~~~~~i~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (162)
T 3sw1_A 24 AQLLQSMVDASNDGIVVAEKEGDDTILIYVNAAFEYLTGYSRDEILYQDCRFLQGDDRDQLGRARIRKAMAEGRPCR 100 (162)
T ss_dssp HHHHHHHHHTCSSEEEEEEEETTEEEEEEECHHHHHHHTCCHHHHTTSBGGGGTTTCCCCHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHhhccCcEEEEeCCCCccEEEEECHHHHHHHCCCHHHHcCCCcceecCCCcCHHHHHHHHHHHhcCCCCc
Confidence 45588899999999999998742238999999999999999999999999999988888888888999888887653
No 105
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.69 E-value=8.8e-09 Score=72.36 Aligned_cols=66 Identities=20% Similarity=0.177 Sum_probs=52.1
Q ss_pred HHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccc
Q 021027 244 YISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQA 314 (318)
Q Consensus 244 ~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 314 (318)
..++++++++|+++|.+| +|+++|+++++++||+.++++|+++.++.++... ....+.++++.+.+
T Consensus 10 ~~il~~~~~~i~~~D~~g---~I~~~N~aa~~l~g~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~ 75 (115)
T 3b33_A 10 SAILNNMVTATLILDDGL---AIRYANPAAELLFSQSAKRIVEQSLSQLIQHASL--DLALLTQPLQSGQS 75 (115)
T ss_dssp HHHHHHCSSEEEEECTTC---BEEEECHHHHHHTTSCHHHHTTCBHHHHCSEEEC--CTHHHHHHHHHCCC
T ss_pred HHHHhhcCceEEEECCCC---cEEEECHHHHHHhCCCHHHHhCCCHHHHhCccch--hhHHHHHHHHcCCc
Confidence 458999999999999998 9999999999999999999999999887654321 12344555555544
No 106
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=98.68 E-value=2.2e-08 Score=71.23 Aligned_cols=51 Identities=16% Similarity=0.430 Sum_probs=46.8
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhC------------CCcccccCCCcccccC
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG------------YDRNEVVGQNCRFLNG 294 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~G------------y~~~el~G~~~~~l~~ 294 (318)
.+++.++++++++|+++|.+| +|+++|++|++++| |++++++|+++..+.+
T Consensus 5 ~rl~~il~~~~~gviv~D~~g---~I~~~N~a~~~llg~~~~~i~~~~~g~~~~~~~G~~~~~~~~ 67 (121)
T 4hi4_A 5 ARIASALDNVSANVMIADNDL---NIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHK 67 (121)
T ss_dssp HHHHHHHTTSSSEEEEEETTC---BEEEECHHHHHHHHHTHHHHHHHCTTCCGGGCTTCBGGGGCS
T ss_pred HHHHHHHhcCCccEEEEcCCC---eEEEecHHHHHHHHHHHHHHHHhcCCCChHHhcCCCHHHhcC
Confidence 458889999999999999998 99999999999995 9999999999988874
No 107
>3icy_A Sensor protein; sensory box histidine kinase/response regulator domain, kinase, chlorobium tepidum TLS, PSI-2; 2.68A {Chlorobaculum tepidum}
Probab=98.67 E-value=4.1e-09 Score=74.16 Aligned_cols=74 Identities=8% Similarity=-0.065 Sum_probs=65.0
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCc--ccccCCCCCHHHHHHHHHHHhccccee
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNC--RFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~--~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
+++++.++++++++++.+|.++ .++++|+++++++||++++++|+.. ..+++|++.+.+.+.+..+++.+.++.
T Consensus 3 ~~~~~~l~~~~~~~i~~~d~~~---~~~~~n~~~~~~~G~~~~~~~~~~~~~~~~i~p~d~~~~~~~~~~~~~~~~~~~ 78 (118)
T 3icy_A 3 AEELQALVDNIPAAIYHLDVSG---QATIRFRPPAFLKTLVSEHAGTTRLNTLSMIHHDDRHMLSNAYSKLREAKHSLT 78 (118)
T ss_dssp HHHHHHHHTTCCCCCEEECTTS---CEEECCCCCGGGGGGEEEETTEEEEGGGGGBCGGGHHHHHHHHHHHHHSCCEEE
T ss_pred HHHHHHHHhcCCceEEEEEcCC---CceEEechhHhhcCCCHHHccCChhHHHHHcCHHHHHHHHHHHHHHHhcCCCce
Confidence 3568889999999999999987 9999999999999999999988754 678899999999999999888877653
No 108
>1byw_A Protein (human ERG potassium channel); PAS domain, potassium channel domain, membrane protein; 2.60A {Homo sapiens} SCOP: d.110.3.6
Probab=98.67 E-value=5.8e-08 Score=66.52 Aligned_cols=64 Identities=27% Similarity=0.573 Sum_probs=52.7
Q ss_pred CcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCC--cccccCCCCCHHHHHHHHHHHhcccce
Q 021027 252 QSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 252 ~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
.+|+++|...++++|+++|+++++++||+.++++|++ ...+.++.........+..++..+.++
T Consensus 2 ~~i~i~d~~~~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (110)
T 1byw_A 2 RKFIIANARVENCAVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPCTQRRAAAQIAQALLGAEER 67 (110)
T ss_dssp CEEEEEETTSSSCBEEEECHHHHHHHTCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHHHTTCCE
T ss_pred CCEEEEeccCCCCcEEEECHHHHHHhCCCHHHHccCCCccccccCCcCCHHHHHHHHHHHhcCCCc
Confidence 5788999864456999999999999999999999998 566666667777778888888777655
No 109
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=98.63 E-value=6.1e-08 Score=64.71 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=48.8
Q ss_pred cCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
++++|+++|.++ +|+++|+++++++||+.++++|+++..+ + ........+.+++..+.++
T Consensus 1 ~~~~i~~~d~~g---~i~~~N~~~~~l~g~~~~~~~g~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 60 (96)
T 3a0s_A 1 METAIITLSKDG---RITEWNKKAEQLFGLKKENVLGRRLKDL--P-DFEEIGSVAESVFENKEPV 60 (96)
T ss_dssp CCCEEEEEETTS---BEEEECHHHHHHHCCCHHHHTTSBGGGS--T-TCHHHHHHHHHHHHHTCCE
T ss_pred CCceEEEEcCCC---CEeehhHHHHHHhCCCHHHhcCCCHHHC--c-chHHHHHHHHHHhccCCeE
Confidence 478999999987 9999999999999999999999999888 3 2344556666776666554
No 110
>2l0w_A Potassium voltage-gated channel, subfamily H (EAG member 2, isoform CRA_B; HERG, PAS domain, voltage-gated potassium channel, membrane; NMR {Homo sapiens} PDB: 2l1m_A 2l4r_A
Probab=98.63 E-value=1e-07 Score=68.39 Aligned_cols=71 Identities=24% Similarity=0.513 Sum_probs=59.8
Q ss_pred hHHHHHhccCCcEEEecC---CCCCCCeeEecHHHHHHhCCCcccccCCC--cccccCCCCCHHHHHHHHHHHhcccce
Q 021027 242 SLYISLGRIKQSFVLIDP---HLPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~---~~~~~~i~~~N~a~~~~~Gy~~~el~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
.+...+++++++|+++|. ++ +|+++|+++++++||+.++++|++ +..+.++.........+..++..+.++
T Consensus 20 ~~~~~~~~~~~~i~~~d~~~~~g---~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (138)
T 2l0w_A 20 TIIRKFEGQSRKFIIANARVENC---AVIYCNDGFCELCGYSRAEVMQRPCTCDFLHGPRTQRRAAAQIAQALLGAEER 95 (138)
T ss_dssp HHHHHHTTTTSEEEEEESSSTTC---BEEEECSHHHHHHSCCHHHHTTSBTTCGGGCCTTCCHHHHHHHHHHTTCSSCE
T ss_pred HHHHHHhcCCCCEEEEecCCCCC---EEEEeCHHHHHHhCCCHHHHcCCCCcccccCCcccchhHHHHHHHHHhhcCCc
Confidence 355667779999999998 65 999999999999999999999999 566777777777788888888777654
No 111
>3eeh_A Putative light and redox sensing histidine kinase; structural genomic MCSG, protein structure initiative, midwest center for STRU genomics; HET: PG5; 1.95A {Haloarcula marismortui}
Probab=98.63 E-value=1.6e-08 Score=71.29 Aligned_cols=75 Identities=3% Similarity=-0.074 Sum_probs=59.0
Q ss_pred cccchhHHHHHhccCCcEEEecCC-CCCCCeeEecHHHHHHhCCCcccccCCC--cccccCCCCCHHHHHHHHHHHhccc
Q 021027 237 GFISSSLYISLGRIKQSFVLIDPH-LPDMPMVYASDAFLKLTGYDRNEVVGQN--CRFLNGVDTDTTVLYQIKESIQTEQ 313 (318)
Q Consensus 237 ~~~~~~l~~~~~~~~~~i~i~d~~-~~~~~i~~~N~a~~~~~Gy~~~el~G~~--~~~l~~~~~~~~~~~~~~~~l~~~~ 313 (318)
......++.++++++++++++|.+ + .++++|+++++++||++++++|+. +..+++|++...+...+.. +..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~i~~~d~~~~---~i~~~n~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 82 (125)
T 3eeh_A 7 AKSERRVRELTEATNDILWEFTADLS---EVLVINSAYEDIWGRSVAKLRENPHDFLNGIHPEDRELMKDTMQS-LMDGE 82 (125)
T ss_dssp ---CHHHHHHHSCCCCEEEEEETTSS---CEEEECTHHHHHHSSCHHHHHHCGGGGGGGBCHHHHHHHHHHHHH-HHTTC
T ss_pred HHHHHHHHHHHhcCCceEEEEEcCCC---cEEEecHHHHHHHCCCHHHHccCcHHHHHhcCHHHHHHHHHHHHH-HHcCC
Confidence 344567889999999999999998 7 999999999999999999999987 5667777766666666655 45554
Q ss_pred ce
Q 021027 314 AC 315 (318)
Q Consensus 314 ~~ 315 (318)
++
T Consensus 83 ~~ 84 (125)
T 3eeh_A 83 SA 84 (125)
T ss_dssp CE
T ss_pred Cc
Confidence 43
No 112
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=98.59 E-value=4.6e-08 Score=68.54 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=47.0
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCC---CcccccCCCcccccCC
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY---DRNEVVGQNCRFLNGV 295 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy---~~~el~G~~~~~l~~~ 295 (318)
..++.++++++++|+++|.+| +|+++|+++++++|| +.++++|+++..+.++
T Consensus 15 ~~~~~il~~~~~~i~~~d~~g---~i~~~N~~~~~~~g~~~~~~~~~~g~~~~~~~~~ 69 (118)
T 2w0n_A 15 EQRQAMLQSIKEGVVAVDDRG---EVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV 69 (118)
T ss_dssp HHHHHHHHCCCCCCEEEBTTT---BCCCBCHHHHHHHCSCTTTTTSSCCCTTCCCSCT
T ss_pred HHHHHHHhhccccEEEECCCC---cEeehhHHHHHHhCCCccChhhhhccCcccccCc
Confidence 447789999999999999987 999999999999998 8899999999888754
No 113
>3vol_A Aerotaxis transducer AER2; heme, oxygen sensor protein, PAS, HAMP, cyanoMet, CN-bound, protein; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=98.53 E-value=1.6e-07 Score=75.12 Aligned_cols=63 Identities=11% Similarity=0.310 Sum_probs=52.5
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHh------------CCCcccccCCCcccccCCCCCHHHHHHHHHH
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLT------------GYDRNEVVGQNCRFLNGVDTDTTVLYQIKES 308 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~------------Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~ 308 (318)
.++..++++++++|+++|++| +|+|+|++|++++ ||++++++|+++..+... +.....+.+.
T Consensus 22 ~~l~~iLd~~~~~vii~D~~g---~I~~~N~a~~~ll~~~~~~~~~~l~G~~~~eliG~~~~~~~~~---~~~~~~~~~~ 95 (233)
T 3vol_A 22 ARIKSALDNVSANVMIADNDL---NIIYMNRTVSEMLGRAEADIRKQLPNFDAGRLMGANIDVFHKN---PAHQRHLLAN 95 (233)
T ss_dssp HHHHHHHTTSSSEEEEEETTS---BEEEECHHHHHHHHHTHHHHHTTCTTCCTTSCTTCBGGGGSSS---HHHHHHHHHT
T ss_pred HHHHHHHhcCCCcEEEECCCC---cEEEecHHHHHHHHHHHHHHHhhcCCCCHHHHcCCCHHHHcCC---HHHHHHHHHh
Confidence 557889999999999999998 9999999999998 899999999999988742 4444455444
Q ss_pred H
Q 021027 309 I 309 (318)
Q Consensus 309 l 309 (318)
+
T Consensus 96 ~ 96 (233)
T 3vol_A 96 L 96 (233)
T ss_dssp C
T ss_pred c
Confidence 3
No 114
>1v9y_A Heme PAS sensor protein; signaling protein; HET: HEM; 1.32A {Escherichia coli} SCOP: d.110.3.2 PDB: 1v9z_A* 1vb6_A* 1s67_L* 1s66_L*
Probab=98.52 E-value=1.5e-07 Score=70.40 Aligned_cols=70 Identities=24% Similarity=0.284 Sum_probs=57.5
Q ss_pred chhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcc
Q 021027 240 SSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTE 312 (318)
Q Consensus 240 ~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~ 312 (318)
...+..++++++++|+++|.++ .|+++|+++++++||+.++++|+++..+.++.........+......+
T Consensus 39 ~~~~~~~l~~~~~~i~~~d~~g---~i~~~N~~~~~l~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (167)
T 1v9y_A 39 DGIFFPALEQNMMGAVLINEND---EVMFFNPAAEKLWGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGG 108 (167)
T ss_dssp -CCHHHHHHTCSSEEEEECTTS---BEEEECHHHHHHHSCCGGGTTTSBGGGGSCGGGTTTHHHHHHHHHC--
T ss_pred hHHHHHHHHhCCCCEEEECCCC---cEEEECHHHHHHhCCCHHHHcCCChhhccCccccchHHHHHHHHhhcC
Confidence 4458889999999999999887 999999999999999999999999999887766655556665555544
No 115
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=98.50 E-value=5.6e-08 Score=72.05 Aligned_cols=70 Identities=11% Similarity=0.109 Sum_probs=57.1
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHH---HHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDA---FLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a---~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
..+..+|++++++|+++|.++ +|+|+|++ +++++| ..++++|+++.++.+ .........+.+++++|++.
T Consensus 19 ~~l~~IL~~~~~gI~~vD~~g---~I~~~N~a~~~~~~i~g-~~~~~iGr~v~~~~~-~~~~~~v~~i~~~l~~g~~~ 91 (151)
T 2qkp_A 19 EQANLILNHLPLEITFVNKDD---IFQYYNDSVPAAEMVFK-RTPSQVGRNVELCHP-PKVLDKVKKVFELLRNGQRD 91 (151)
T ss_dssp HHHHHHHHHSSSEEEEEETTS---BEEEECCCSCGGGCSSC-CCGGGTTSBGGGSSC-HHHHHHHHHHHHHHHTTSBS
T ss_pred HHHHHHHHhCCCceEEEcCCC---eEEEEeCCCchhhhhcC-CCHHHcCCCHHHhCC-HHHHHHHHHHHHHHHcCCcc
Confidence 458889999999999999998 99999999 999999 568899999998764 33344456677777777653
No 116
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima}
Probab=98.45 E-value=1.4e-07 Score=80.22 Aligned_cols=69 Identities=9% Similarity=0.099 Sum_probs=54.3
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
..++.++++++++|+++|.+| +|++||+++++++||++++++|+++.++.++ ......+...+..+.++
T Consensus 8 ~~~~~i~~~~~~~i~~~d~~g---~i~~~N~a~~~l~G~~~~e~~G~~~~~~~~~---~~~~~~~~~~~~~~~~~ 76 (349)
T 3a0r_A 8 NFSESILESLETAIITLSKDG---RITEWNKKAEQLFGLKKENVLGRRLKDLPDF---EEIGSVAESVFENKEPV 76 (349)
T ss_dssp -CCCSSGGGSSSEEEEEESSS---BCSCBCHHHHHHHSCCSTTTTTCBSTTSTTT---THHHHHHHHHHHHCCCC
T ss_pred HHHHHHHhhhcCeEEEECCCC---CEEeeHHHHHHHhCCCHHHHcCcCHHHCcCh---hHHHHHHHHHHhcCCce
Confidence 346678999999999999987 9999999999999999999999999988433 23344455555555543
No 117
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.78 E-value=3.1e-08 Score=82.35 Aligned_cols=113 Identities=13% Similarity=0.096 Sum_probs=76.3
Q ss_pred HHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcC---CChhhhcCCCCCcccCCC---CCh--HHHHHHHHHHHh-cCCeE
Q 021027 23 ALDELPDSFTITDPSISGHPIVFASRGFLKMSG---FSRAEIIGRNGRMFQGPR---TNR--RTIMEIREAIRE-ERPIE 93 (318)
Q Consensus 23 ~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G---~~~~e~~g~~~~~l~~~~---~~~--~~~~~~~~~~~~-~~~~~ 93 (318)
+++++++|++++|.+ |+|+++|++++++++ ++ ++++|+++..+.++. ... .+...+...+.. +....
T Consensus 175 ~~~~~~dGIivvD~~---G~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~~~~~~~~~~~~~~~l~~vl~~~~~~~~ 250 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVD---GVVSYASPNALSAYHRMGLT-TELEGVNLIDATRPLISDPFEAHEVDEHVQDLLAGDGKGMR 250 (305)
Confidence 356899999999999 999999999999985 44 688999877765432 100 111212223332 22222
Q ss_pred EEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccccccccccc
Q 021027 94 VNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKHMRNSGMSY 146 (318)
Q Consensus 94 ~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~~~~~~~~~ 146 (318)
.+. ..+ ..++.++..|+.+ +|.+.|++.+++|||+.++.++++..+
T Consensus 251 ~ei---~~~--~~~l~v~~~Pi~~--~g~~~G~Vvv~rDITE~~~lE~eL~~K 296 (305)
T 2ykf_A 251 MEV---DAG--GATVLLRTLPLVV--AGRNVGAAILIRDVTEVKRRDRALISK 296 (305)
Confidence 221 112 2466788889876 578889999999999999997666544
No 118
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=98.37 E-value=4.8e-07 Score=69.68 Aligned_cols=54 Identities=15% Similarity=0.064 Sum_probs=49.0
Q ss_pred hhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCC
Q 021027 241 SSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDT 297 (318)
Q Consensus 241 ~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~ 297 (318)
..+..+++++++||+++|.+| +|+++|+++++++|++.++++|+++..+.++..
T Consensus 80 ~~l~~il~~~~~gvi~~D~~g---~I~~~N~aa~~llg~~~~~~~g~~~~~~~~~~~ 133 (190)
T 2jhe_A 80 LALSALLEALPEPVLSVDMKS---KVDMANPASCQLFGQKLDRLRNHTAAQLINGFN 133 (190)
T ss_dssp HHHHHHHHHCSSCEEEECTTC---BEEEECHHHHHHHTSCHHHHTTSBGGGTSTTCC
T ss_pred HHHHHHHHhCCCcEEEEcCCC---CEEEEcHHHHHHhCCCHHHhcCccHHHHhCCCC
Confidence 457889999999999999998 999999999999999999999999999876543
No 119
>3h9w_A Diguanylate cyclase with PAS/PAC sensor; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.90A {Marinobacter aquaeolei}
Probab=98.36 E-value=1.1e-07 Score=66.60 Aligned_cols=65 Identities=11% Similarity=-0.018 Sum_probs=53.6
Q ss_pred cCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCC-cccccCCCCCHHHHHHHHHHHhccccee
Q 021027 250 IKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQN-CRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 250 ~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
++++++.+|... ++++|+|+++++++||++++++|.. +..+++|++.+.+.+.+.+++..+.++.
T Consensus 2 a~~giw~~d~~~--~~~~~~n~~~~~l~G~~~~e~~~~~~~~~~ihpdd~~~~~~~~~~~~~~~~~~~ 67 (115)
T 3h9w_A 2 TKAIPWKINWQT--MAFEYIGPQIEALLGWPQGSWKSVEDWATRMHPEDQEWVVNFCVKQSECGVDHE 67 (115)
T ss_dssp -CCEEEEEETTT--TEEEEECTHHHHHHCSCGGGCCBHHHHHHSBCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cceEEEEEEcCC--CcEEEEChhHHHHhCCChHHccCHHHHHHhcCHHHHHHHHHHHHHHHhcCCccc
Confidence 468899999543 4899999999999999999999942 3568899999999999999998887653
No 120
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=97.52 E-value=1.7e-07 Score=77.85 Aligned_cols=46 Identities=24% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHhccCCcEEEecCCCCCCCeeEecHHHHHHhC---CCcccccCCCcccccCC
Q 021027 246 SLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG---YDRNEVVGQNCRFLNGV 295 (318)
Q Consensus 246 ~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~G---y~~~el~G~~~~~l~~~ 295 (318)
.++++++||+++|.+| +|+++|+++++++| ++ ++++|+++.++...
T Consensus 175 ~~~~~~dGIivvD~~G---~Ii~~N~aA~~ll~~lG~~-~~~iGk~l~el~~~ 223 (305)
T 2ykf_A 175 SSPRAGDGFIRLDVDG---VVSYASPNALSAYHRMGLT-TELEGVNLIDATRP 223 (305)
Confidence 5677899999999998 99999999999985 55 78999999888754
No 121
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor, bacteriopbhytochrome; HET: MSE BLA; 2.90A {Rhodopseudomonas palustris tie-1}
Probab=98.13 E-value=2.8e-06 Score=77.90 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=61.2
Q ss_pred hHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhccccee
Q 021027 242 SLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQACT 316 (318)
Q Consensus 242 ~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~ 316 (318)
.+...+++++++|+++|.+| +|+|||++|++|+||+.+|++|++...+.++++.. ....+.+.+..|++|+
T Consensus 519 ~~~~lle~a~~~i~~~D~~g---rI~~~N~a~~~l~G~s~~e~~g~~~l~~~~~~~~~-~~~~i~~~l~~g~~~~ 589 (635)
T 4eho_A 519 QASSQVHASMQPVLITDAEG---RILLMNDSFRDMLPAGSPSAVHLDDLAGFFVESND-FLRNVAELIDHGRGWR 589 (635)
T ss_dssp SHHHHHHHCSSCCEEEETTC---CEEEECHHHHTTSCSSCCCCCSSGGGTTSSSSCTH-HHHHHHHHHHHCCCBC
T ss_pred HHHHHHHhCCCcEEEECCCC---eEeeHHHHHHHHHCcChHHHcCcchhhccCCCCHH-HHHHHHHHHHcCCcEE
Confidence 35678899999999999997 99999999999999999999999988887776655 5677788888888774
No 122
>3cax_A Uncharacterized protein PF0695; structural genomics, unknown function, PSI-2, protein struct initiative; 2.43A {Pyrococcus furiosus dsm 3638}
Probab=98.02 E-value=3.3e-06 Score=72.16 Aligned_cols=72 Identities=11% Similarity=0.131 Sum_probs=59.3
Q ss_pred ccchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhcccce
Q 021027 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQTEQAC 315 (318)
Q Consensus 238 ~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 315 (318)
.....+..+++++++||+++|.+| +|+++|++ ++++ ++.++++|+++..+++ .........+..++++|++.
T Consensus 236 ~~~~~l~~IL~~l~dgIivvD~~g---~I~~~N~a-e~i~-~~~~e~iGr~v~~~~p-~~~~~~~~~l~~~l~~g~~~ 307 (369)
T 3cax_A 236 LNIEELKAIFEALPVDVTFIDKDD---RVRFFSPG-ERIF-TRTPSVLGRPVQLCHP-PKSVYVVNKILKAFKEGRKK 307 (369)
T ss_dssp ECHHHHHHHHHHSSSEEEEECTTS---BEEEECCS-SCSS-CCCGGGTTCBTTTSSC-GGGHHHHHHHHHHHHHTSCS
T ss_pred hhHHHHHHHHHhCCCcEEEECCCC---cEEEEcCH-HHcc-CChHHHcCCcHHHHCC-hhhHHHHHHHHHHHHcCCce
Confidence 334568899999999999999998 99999999 9999 9999999999998874 34445566677777777653
No 123
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=97.74 E-value=9.5e-05 Score=51.90 Aligned_cols=102 Identities=11% Similarity=0.095 Sum_probs=77.0
Q ss_pred eEEEEcCCCCCCcEEEecHhHHHhcCCCh--hhhcCCCCCcccCCCCCh--HHHHHHHHHHHhcCCeEEEEEEEecCCcE
Q 021027 30 SFTITDPSISGHPIVFASRGFLKMSGFSR--AEIIGRNGRMFQGPRTNR--RTIMEIREAIREERPIEVNLLNYKKDGTP 105 (318)
Q Consensus 30 ~i~~~d~~~~~~~i~~~N~~~~~~~G~~~--~e~~g~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 105 (318)
-+.-.|.+ |+++++.....+ .++.+ +|++|+.+.+++++++.. .+......++..|......++.+.++|..
T Consensus 9 F~sRh~~d---GKf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~S~~YRfr~k~g~~ 84 (132)
T 1oj5_A 9 FMTKQDTT---GKIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTASSPSYRFILNDGTM 84 (132)
T ss_dssp EEEEECTT---CCEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEECCCEEEECTTSCE
T ss_pred eEEeecCC---CcEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCccccceEEEecCCcE
Confidence 34456778 999999998874 67777 899999999999998855 77777888887777677778888999999
Q ss_pred EEEEEEEEeeccCCCCceeEEEEEEecccc
Q 021027 106 FWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (318)
Q Consensus 106 ~~~~~~~~~i~~~~~g~~~~~i~~~~DIte 135 (318)
+|+......++++..+++..++++-.=+.+
T Consensus 85 V~~qT~sk~f~np~t~e~e~Ivs~n~v~r~ 114 (132)
T 1oj5_A 85 LSAHTRCKLCYPQSPDMQPFIMGIHIIDRE 114 (132)
T ss_dssp EEEEEEEEEECC----CCCEEEEEEEEECC
T ss_pred EEEEEEEEEecCCCCCCCCEEEEEEEEEcC
Confidence 999988888887334566666665544443
No 124
>1oj5_A Steroid receptor coactivator 1A; transcriptional coactivator, complex, LXXLL motif, transcriptional regulation; 2.2A {Mus musculus} SCOP: d.110.3.8
Probab=95.27 E-value=0.0081 Score=42.15 Aligned_cols=56 Identities=9% Similarity=0.003 Sum_probs=45.9
Q ss_pred EecCCCCCCCeeEecHHHHHHhCCCc--ccccCCCcccccCCCCCH--HHHHHHHHHHhcccce
Q 021027 256 LIDPHLPDMPMVYASDAFLKLTGYDR--NEVVGQNCRFLNGVDTDT--TVLYQIKESIQTEQAC 315 (318)
Q Consensus 256 i~d~~~~~~~i~~~N~a~~~~~Gy~~--~el~G~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~ 315 (318)
-.|.+| .|++|..+..+ .+|.. +||+|+++.+++++.+.. ...+...+++..|...
T Consensus 12 Rh~~dG---Kf~~vDq~~~r-~~~~~g~qdLlGrsiy~f~H~~D~~~s~l~~h~~~vl~~Gq~~ 71 (132)
T 1oj5_A 12 KQDTTG---KIISIDTSSLR-AAGRTGWEDLVRKCIYAFFQPQGREPSYARQLFQEVMTRGTAS 71 (132)
T ss_dssp EECTTC---CEEEEECHHHH-TTCCSCHHHHHHHHHHHHTSCBTTBCCHHHHHHHHHHHHSEEE
T ss_pred eecCCC---cEEEEeccccc-ccccccHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHcCCcc
Confidence 345555 99999999874 78888 899999999999999965 7788888888877644
No 125
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=94.53 E-value=0.025 Score=47.12 Aligned_cols=55 Identities=5% Similarity=0.108 Sum_probs=40.8
Q ss_pred CCcEE-EecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 251 KQSFV-LIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 251 ~~~i~-i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
|-|++ +.+.. +++|+.+|..+++++|+++++++|+++.+++++. ....+++.+..
T Consensus 41 p~G~Ll~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~----~~~~l~~~l~~ 96 (337)
T 2ool_A 41 PHGYLFVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAA----SAARLTHALHG 96 (337)
T ss_dssp TTSEEEEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHH----HHHHHHHHHCC
T ss_pred CCEEEEEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHH----HHHHHHHHHhc
Confidence 34544 34433 4699999999999999999999999999998653 34455555544
No 126
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9
Probab=90.68 E-value=0.41 Score=39.85 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=33.3
Q ss_pred EEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCC
Q 021027 32 TITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (318)
Q Consensus 32 ~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~ 73 (318)
++++.+ +++++.+|..+..++|+++++++|+++..++++.
T Consensus 46 l~~~~~--~~~i~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 85 (337)
T 2ool_A 46 FVVSET--DLRIASVSANVEDLLRQPPASLLNVPIAHYLTAA 85 (337)
T ss_dssp EEECTT--TCBEEEEETTHHHHHSSCGGGGTTCBGGGGBCHH
T ss_pred EEEECC--CCEEEEEehhHHHHHCcCHHHHcCCCHHHHcCHH
Confidence 345532 4899999999999999999999999988887654
No 127
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=89.33 E-value=1.2 Score=29.29 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhCC
Q 021027 243 LYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTGY 279 (318)
Q Consensus 243 l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy 279 (318)
.+.+..+.|.++++-+... .|+|.|.+|.+|+--
T Consensus 22 iq~iY~nSPVpVCVRNq~R---kilYaN~aF~elF~K 55 (127)
T 4ew7_A 22 IQDIYKNSPVPVCVRNQSR---KIIYANGAFIELFSK 55 (127)
T ss_dssp HHHHHTTCSSCEEEECTTS---CEEEECHHHHHHTTS
T ss_pred HHhhhcCCCccEEEecccc---eEEEecchHHHHhhc
Confidence 5567788899999999987 899999999999643
No 128
>4ew7_A Conjugative transfer: regulation; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology; 1.67A {Salmonella enterica subsp}
Probab=85.77 E-value=5.7 Score=26.14 Aligned_cols=91 Identities=9% Similarity=0.139 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHH-HHHHhcCCeEEEEE
Q 021027 19 WVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIR-EAIREERPIEVNLL 97 (318)
Q Consensus 19 ~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 97 (318)
..+.+..++|.++.+-+.. ..++|.|.+|.++|-.....+-|.+.... ..+.+...+. .+..-|....+ .+
T Consensus 21 ~iq~iY~nSPVpVCVRNq~---RkilYaN~aF~elF~Ked~~~sg~S~~~~----~vE~~LS~LELeCqsLGhG~af-~r 92 (127)
T 4ew7_A 21 SIQDIYKNSPVPVCVRNQS---RKIIYANGAFIELFSKEDQPLSGDSYNRY----GVEVFLSSLELECQSLGHGAAF-CR 92 (127)
T ss_dssp HHHHHHTTCSSCEEEECTT---SCEEEECHHHHHHTTSCCCGGGCTTSSHH----HHHHHHHHHHHHHHHHCTTCEE-EE
T ss_pred hHHhhhcCCCccEEEeccc---ceEEEecchHHHHhhcccCcccCccccee----eehhhHHHHHHHHHhhcCCceE-EE
Confidence 4567899999999999999 99999999999997665544444432211 0011111111 22222332222 22
Q ss_pred EEecCCcEEEEEEEEEeecc
Q 021027 98 NYKKDGTPFWMLFKMSLVFG 117 (318)
Q Consensus 98 ~~~~~g~~~~~~~~~~~i~~ 117 (318)
...-.|+.+.+++....+.+
T Consensus 93 ~Fn~~~e~yQIRmE~iSf~~ 112 (127)
T 4ew7_A 93 RFNFHGEIYQIRMENISFDN 112 (127)
T ss_dssp EEEETTEEEEEEEEEEECTT
T ss_pred EeecCCceEEEEEEEeeecC
Confidence 34456777777776666644
No 129
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=81.45 E-value=1.8 Score=35.72 Aligned_cols=53 Identities=17% Similarity=0.301 Sum_probs=39.9
Q ss_pred CcE-EEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCCCCHHHHHHHHHHHhc
Q 021027 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 252 ~~i-~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~~~~~~~~~~~~~l~~ 311 (318)
-|+ +..|. +++|+.++..+..++|.++++++|+++..++.+ .....++.++..
T Consensus 29 hG~Ll~~~~---~~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~----~~~~~l~~~l~~ 82 (327)
T 4e04_A 29 HGLLLALAA---DMTIVAGSDNLPELTGLAIGALIGRSAADVFDS----ETHNRLTIALAE 82 (327)
T ss_dssp TSEEEEECT---TCBEEEEETTHHHHHSCCHHHHTTCBHHHHBCH----HHHHHHHHHHHS
T ss_pred CeEEEEEcC---CCeEEEEcccHHHHhCCChHhhcCCCHHHHcCH----HHHHHHHHHhhc
Confidence 344 44553 459999999999999999999999999998843 445556666543
No 130
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=80.06 E-value=0.89 Score=37.77 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=34.2
Q ss_pred CcE-EEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCC
Q 021027 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGV 295 (318)
Q Consensus 252 ~~i-~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~ 295 (318)
-|+ +..|.. +++|+.++..+..++|.++++++|+++..++.+
T Consensus 52 hG~LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 52 HGALLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp TSEEEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 344 444542 469999999999999999999999999998855
No 131
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Probab=76.72 E-value=10 Score=31.24 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=38.2
Q ss_pred EEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHh
Q 021027 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIRE 88 (318)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~ 88 (318)
++++|.+ ++|+.++..+..++|.++++++|+++..++.+. ....+...+..
T Consensus 32 Ll~~~~~---~~I~~~S~N~~~~lg~~~~~~lG~~l~~ll~~~----~~~~l~~~l~~ 82 (327)
T 4e04_A 32 LLALAAD---MTIVAGSDNLPELTGLAIGALIGRSAADVFDSE----THNRLTIALAE 82 (327)
T ss_dssp EEEECTT---CBEEEEETTHHHHHSCCHHHHTTCBHHHHBCHH----HHHHHHHHHHS
T ss_pred EEEEcCC---CeEEEEcccHHHHhCCChHhhcCCCHHHHcCHH----HHHHHHHHhhc
Confidence 4566755 999999999999999999999999887776532 33444455443
No 132
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=69.95 E-value=33 Score=25.81 Aligned_cols=94 Identities=9% Similarity=0.058 Sum_probs=53.0
Q ss_pred HHHHHHHHhcCCC--eEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEE
Q 021027 17 TLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEV 94 (318)
Q Consensus 17 ~~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (318)
...+..+....+. .+++.|.+ |.++..+.. ...+.. ... ...+..++..+..+-.
T Consensus 57 ~~~L~~~~~~~~~~~~i~i~d~~---G~~~~~~~~----------~~~~~~------~~~----r~~f~~a~~~~~~~is 113 (217)
T 4dah_A 57 QSILEKTFDSEPRFSGLYFLNAK---GDVTASTTE----------LKTKVN------LAD----RSFFIKAKETKKTVIS 113 (217)
T ss_dssp HHHHHHHHTTCTTEEEEEEEETT---CBEEEESSC----------CSSCCB------CTT----SHHHHHHHHHCSCEEC
T ss_pred HHHHHHHHhcCCcccEEEEECCC---CcEEEecCC----------CCCCCC------cch----hHHHHHHHhcCCcEEe
Confidence 3455566665554 57889999 998876530 001110 011 1234445555554333
Q ss_pred EEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 95 NLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 95 ~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
+...-...|. ++.....|+.+ .+|.+.|+++...++...
T Consensus 114 ~~~~~~~~g~--~~i~ia~pi~~-~~g~~~Gvl~~~i~l~~l 152 (217)
T 4dah_A 114 DSYSSRITGQ--PIFTICVPVLD-SKRNVTDYLVAAIQIDYL 152 (217)
T ss_dssp CCEECTTTCS--EEEEEEEEEEC-TTSCEEEEEEEEEEHHHH
T ss_pred ceEEcCCCCC--EEEEEEEEEEC-CCCCEEEEEEEEEcHHHH
Confidence 2222223455 55567889988 789999998877665543
No 133
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=65.60 E-value=2 Score=37.98 Aligned_cols=43 Identities=12% Similarity=0.192 Sum_probs=34.1
Q ss_pred CcE-EEecCCCCCCCeeEecHHHHHHhCCCcccccCCCcccccCCC
Q 021027 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRFLNGVD 296 (318)
Q Consensus 252 ~~i-~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~l~~~~ 296 (318)
-|+ +..|.. +++|+.++.....++|.++++++|+++..++.+.
T Consensus 29 hG~LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 29 HGLVVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp TSEEEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred CeEEEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 344 445542 3599999999999999999999999998887653
No 134
>2hje_A Autoinducer 2 sensor kinase/phosphatase LUXQ; PER/ARNT/simple-minded (PAS) fold, autoinducer-2 (AI-2), quorum sensing, histidine sensor kinase; 1.70A {Vibrio harveyi} SCOP: d.110.6.3 PDB: 2hj9_C 1zhh_B*
Probab=56.68 E-value=64 Score=24.66 Aligned_cols=87 Identities=11% Similarity=0.046 Sum_probs=57.2
Q ss_pred HhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCC
Q 021027 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (318)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 103 (318)
...+|+--++.+.+ + +.|-++-..++|.+...+ ..+.+.+..+..|.... ....+
T Consensus 58 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 112 (221)
T 2hje_A 58 PSHTPEFRFLTDHK---G--IIWDDGNAHFYGVNDLIL------------------DSLANRVSFSNNWYYIN--VMTSI 112 (221)
T ss_dssp GGGCCSEEEEECSS---S--EEEECSGGGGGTCCHHHH------------------HHHHHHCCSSSSCEEEE--EEETT
T ss_pred cCCCCcEEEEEeCC---c--eEEECCCccccccCHHHH------------------HHHHhhhcccCceEEEE--eccCC
Confidence 45788888888776 4 455666667788876544 22333333444455433 34567
Q ss_pred cEEEEEEEEEeeccCCCCceeEEEEEEecccc
Q 021027 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVS 135 (318)
Q Consensus 104 ~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte 135 (318)
..+++.++-+|+.+..+|++.|++.+..-...
T Consensus 113 g~~~lLvRR~pIi~~~tGeVlG~Ly~gvVLnn 144 (221)
T 2hje_A 113 GSRHMLVRRVPILDPSTGEVLGFSFNAVVLDN 144 (221)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEEEEEEECTT
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecC
Confidence 78888999999987568999998766654443
No 135
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A*
Probab=54.75 E-value=10 Score=31.53 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=33.5
Q ss_pred EEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCC
Q 021027 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGP 72 (318)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~ 72 (318)
+++++.+ +++|+.++.....++|.++++++|+++..++.+
T Consensus 55 LL~l~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~ 94 (343)
T 3s7o_A 55 LLTADGH--SGEVLQMSLNAATFLGQEPTVLRGQTLAALLPE 94 (343)
T ss_dssp EEEEETT--TCBEEEEETTHHHHHSSCHHHHTTCBHHHHSTT
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHHhH
Confidence 4556652 399999999999999999999999998877765
No 136
>3c38_A Autoinducer 2 sensor kinase/phosphatase LUXQ; 2-component system, quorum sensing, histidine kinase, hydrolase, inner membrane, membrane; 2.30A {Vibrio cholerae} PDB: 3c30_A
Probab=48.90 E-value=98 Score=24.50 Aligned_cols=88 Identities=14% Similarity=0.240 Sum_probs=56.4
Q ss_pred HhcCCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEEEEEecCC
Q 021027 24 LDELPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNLLNYKKDG 103 (318)
Q Consensus 24 ~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 103 (318)
...+|+--++.+.+ + +.|-++-..++|.+...+ ..+.+.+..+..|.... ....+
T Consensus 77 p~~~pDfRFI~~~~---~--~~WdDgNa~FyGi~~~~L------------------~~L~~~v~~~~~Wh~~~--~~s~~ 131 (270)
T 3c38_A 77 LSNAPDLRFISSHD---N--ILWDDGNASFYGIAQQEL------------------NKLIRRVAISGNWHLVQ--TPSEG 131 (270)
T ss_dssp GGGCCSEEEEEETT---E--EEEECSCGGGGTCCHHHH------------------HHHHHHSCSSSSCEEEE--ECCSS
T ss_pred ccCCCcEEEEEeCC---c--eEEECCCCceeCCCHHHH------------------HHHHhhcccCCceEEEE--eccCC
Confidence 45678888888766 4 445555567777765443 22333333444455433 35567
Q ss_pred cEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 104 TPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 104 ~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
..+++.++-+|+.+..+|++.|++.+.......
T Consensus 132 g~~~lLvRr~pIid~~TGEVlG~Ly~gvVLnnN 164 (270)
T 3c38_A 132 KSVHILMRRSSLIEAGTGQVVGYLYVGIVLNDN 164 (270)
T ss_dssp SCEEEEEEEEEECCCC-CCCCEEEEEEEECTTC
T ss_pred CceEEEEEccceecCCCCcEEEEEEEEEEecCc
Confidence 778889999999875689999988777655543
No 137
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=48.02 E-value=27 Score=28.23 Aligned_cols=38 Identities=8% Similarity=0.016 Sum_probs=32.6
Q ss_pred ccchhHHHHHhccCCcEEEecCCCCCCCeeEecHHHHHHhC
Q 021027 238 FISSSLYISLGRIKQSFVLIDPHLPDMPMVYASDAFLKLTG 278 (318)
Q Consensus 238 ~~~~~l~~~~~~~~~~i~i~d~~~~~~~i~~~N~a~~~~~G 278 (318)
.+...+..+++..+...++.|... .|+.+|+++..++|
T Consensus 96 ~v~p~l~~lLd~l~~PA~V~d~~~---dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 96 ESLQYLIDMIRNMNVPAFVTDQYV---NIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHHHTCSSCEEEEETTC---BEEEEEHHHHHHHT
T ss_pred ccCHHHHHHHHhcCCCeEEECCCC---CHhhcCHHHHHHhC
Confidence 344568888998888999999886 99999999999996
No 138
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=42.49 E-value=27 Score=30.75 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.0
Q ss_pred CcE-EEecCCCCCCCeeEecHHHHHHhCCCcccccCCCccc-ccCCCCCHHHHHHHHHHHhc
Q 021027 252 QSF-VLIDPHLPDMPMVYASDAFLKLTGYDRNEVVGQNCRF-LNGVDTDTTVLYQIKESIQT 311 (318)
Q Consensus 252 ~~i-~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el~G~~~~~-l~~~~~~~~~~~~~~~~l~~ 311 (318)
-|+ +..|.+ ++|+.++.....++|.++ ++|+++.. ++.+ .....++.++..
T Consensus 26 hG~Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~~----~~~~~l~~~l~~ 78 (505)
T 3nhq_A 26 HGALVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVGP----EVLRMLEEGLTG 78 (505)
T ss_dssp TEEEEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHHH----HHHHHHHHHHSC
T ss_pred CeEEEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCCH----HHHHHHHHHhhc
Confidence 344 445554 599999999999999998 99999988 7743 455666666543
No 139
>1p0z_A Sensor kinase CITA; transferase; HET: FLC MO7; 1.60A {Klebsiella pneumoniae} SCOP: d.110.6.1 PDB: 2v9a_A 2j80_A*
Probab=39.89 E-value=87 Score=21.31 Aligned_cols=25 Identities=20% Similarity=0.154 Sum_probs=19.4
Q ss_pred EEEEeeccCCCCceeEEEEEEecccc
Q 021027 110 FKMSLVFGKEDGRATHFVAVQVPIVS 135 (318)
Q Consensus 110 ~~~~~i~~~~~g~~~~~i~~~~DIte 135 (318)
....|+++ ++|+++|++.+..++..
T Consensus 103 ~~~~PV~~-~~g~viGvv~vg~~l~~ 127 (131)
T 1p0z_A 103 RGKSPIQD-ATGKVIGIVSVGYTIEQ 127 (131)
T ss_dssp EEEEEEEC-TTCCEEEEEEEEEEGGG
T ss_pred EEEEeEEC-CCCCEEEEEEEEEEhHH
Confidence 33459987 68999999998877654
No 140
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Probab=36.60 E-value=15 Score=32.46 Aligned_cols=41 Identities=15% Similarity=0.100 Sum_probs=33.1
Q ss_pred EEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCC
Q 021027 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPR 73 (318)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~ 73 (318)
+++++.. +++|+.++.....++|.++++++|+++..++++.
T Consensus 32 LLal~~~--~~~I~~~S~N~~~~lg~~~~~llG~~l~~ll~~~ 72 (520)
T 3zq5_A 32 VVVLQEP--DLTISQISANCTGILGRSPEDLLGRTLGEVFDSF 72 (520)
T ss_dssp EEEEETT--TTEEEEEETTHHHHHSCCHHHHTTSBHHHHCEES
T ss_pred EEEEECC--CCEEEEEcccHHHHhCcChHHHcCCCHHHHcCHH
Confidence 4556652 3899999999999999999999999877666543
No 141
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=33.25 E-value=18 Score=28.51 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=26.6
Q ss_pred CCcEEEecCCCCCCCeeEecHHHHHHhCCCcccc
Q 021027 251 KQSFVLIDPHLPDMPMVYASDAFLKLTGYDRNEV 284 (318)
Q Consensus 251 ~~~i~i~d~~~~~~~i~~~N~a~~~~~Gy~~~el 284 (318)
+..+++.|-.. +.+.+++.++..++||+++++
T Consensus 43 ~~~~~l~D~~~--~~~~~~s~~~~~llG~~~~~~ 74 (258)
T 3clo_A 43 GGCAVISDLSN--RKSYVTVHPWANFLGLTPEEA 74 (258)
T ss_dssp SSEEEEEETTT--TEEEEEECTTCGGGCCCHHHH
T ss_pred CCeEEEEEcCC--CeEEEEeCCHHHHhCCCcccc
Confidence 45678888553 589999999999999999877
No 142
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=30.94 E-value=56 Score=26.40 Aligned_cols=36 Identities=11% Similarity=0.102 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCeEEEEcCCCCCCcEEEecHhHHHhcC
Q 021027 17 TLWVHEALDELPDSFTITDPSISGHPIVFASRGFLKMSG 55 (318)
Q Consensus 17 ~~~~~~~~~~~~~~i~~~d~~~~~~~i~~~N~~~~~~~G 55 (318)
..-++.+++..+.+.+++|.. ..++.+|+++..+++
T Consensus 98 ~p~l~~lLd~l~~PA~V~d~~---~dvla~N~~a~~L~~ 133 (292)
T 3pxp_A 98 LQYLIDMIRNMNVPAFVTDQY---VNIIAANMITIRFFN 133 (292)
T ss_dssp HHHHHHHHHTCSSCEEEEETT---CBEEEEEHHHHHHHT
T ss_pred CHHHHHHHHhcCCCeEEECCC---CCHhhcCHHHHHHhC
Confidence 345678888888899999999 999999999999995
No 143
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A*
Probab=29.47 E-value=79 Score=27.84 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=29.8
Q ss_pred EEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCc-ccC
Q 021027 31 FTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRM-FQG 71 (318)
Q Consensus 31 i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~-l~~ 71 (318)
+++++.+ ++|+.++.....++|.++ ++|+++.. +++
T Consensus 29 Ll~l~~~---~~I~~~S~N~~~~lg~~~--~lG~~l~~~ll~ 65 (505)
T 3nhq_A 29 LVTLRAD---GMVLAASENIQALLGFVA--SPGSYLTQEQVG 65 (505)
T ss_dssp EEEECTT---SBEEEEETTHHHHHSSCC--CTTCBCCHHHHH
T ss_pred EEEEcCC---CeEEEEcccHHHHhCccc--ccCCchhhhhCC
Confidence 3556667 999999999999999988 88988776 654
No 144
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=27.03 E-value=2.1e+02 Score=21.75 Aligned_cols=95 Identities=12% Similarity=0.131 Sum_probs=51.5
Q ss_pred hHHHHHHHHhcCCC--eEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHH--hcCC
Q 021027 16 YTLWVHEALDELPD--SFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIR--EERP 91 (318)
Q Consensus 16 ~~~~~~~~~~~~~~--~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~ 91 (318)
....+..+....+. .+++.|.+ |. +..+.. .. ..+.. ..+ ...+..++. .+..
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~---G~-~~~s~~------~~---~~~~~------~~~----r~~f~~a~~~~~~~~ 112 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDAD---GQ-LTYASV------KP---VPALD------NSD----RSYFRYHRANDDHTL 112 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTT---SB-EEEESS------SS---EECCB------CTT----SHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhcCCccceEEEECCC---CC-EecCCC------CC---CCCCC------ccc----HHHHHHHHhCCCCCe
Confidence 34456666666554 58889999 88 544321 00 01111 011 123444454 3343
Q ss_pred eEEEEEEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccc
Q 021027 92 IEVNLLNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSR 136 (318)
Q Consensus 92 ~~~~~~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~ 136 (318)
+-.+...-...|. |+.....|+.+ .+|.+.|++++..++...
T Consensus 113 ~is~p~~~~~~g~--~~i~~~~pi~~-~~g~~~Gvl~~~i~l~~l 154 (254)
T 3lif_A 113 LITGPIQSRTSGV--WVFVVSRRLET-TDGKFFGVVVATIESEYF 154 (254)
T ss_dssp EEEEEEECTTTCC--EEEEEEEEEEC-TTCCEEEEEEEEECHHHH
T ss_pred EECCceecCCCCc--EEEEEEeeeeC-CCCCEeEEEEEEECHHHH
Confidence 3333222122444 55567889988 789999999888776543
No 145
>3e4o_A C4-dicarboxylate transport sensor protein DCTB; PAS domain, N-TERM helical dimerization domain, transferase; 2.30A {Sinorhizobium meliloti} PDB: 3e4p_A 3e4q_A 2zbb_A
Probab=22.57 E-value=3e+02 Score=22.08 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=50.5
Q ss_pred HHHHHHHhc-CCCeEEEEcCCCCCCcEEEecHhHHHhcCCChhhhcCCCCCcccCCCCChHHHHHHHHHHHhcCCeEEEE
Q 021027 18 LWVHEALDE-LPDSFTITDPSISGHPIVFASRGFLKMSGFSRAEIIGRNGRMFQGPRTNRRTIMEIREAIREERPIEVNL 96 (318)
Q Consensus 18 ~~~~~~~~~-~~~~i~~~d~~~~~~~i~~~N~~~~~~~G~~~~e~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (318)
..++.+... .-..+++.|.+ |.++..+..- .+...+|.+.. ....+.+++..+.... .
T Consensus 102 ~~L~~~~~~~~~~~i~v~d~~---G~viass~~~------~p~~~~g~d~~----------~R~yf~~Al~g~~~~~--~ 160 (305)
T 3e4o_A 102 RKLEALATSAEAAVIYLIDRS---GVAVAASNWQ------EPTSFVGNDYA----------FRDYFRLAVRDGMAEH--F 160 (305)
T ss_dssp HHHHHHHHHSSCSEEEEEETT---SBEEEETTTT------STTCCTTCBCT----------TSHHHHHHHHHSEEEE--E
T ss_pred HHHHHHHhccCccEEEEECCC---CCEEEeCCCc------CcccccCCCcc----------ccHHHHHHHhcCCcEE--E
Confidence 344444332 34578999999 9988665420 01112232111 1233445555433221 1
Q ss_pred EEEecCCcEEEEEEEEEeeccCCCCceeEEEEEEeccccccc
Q 021027 97 LNYKKDGTPFWMLFKMSLVFGKEDGRATHFVAVQVPIVSRKH 138 (318)
Q Consensus 97 ~~~~~~g~~~~~~~~~~~i~~~~~g~~~~~i~~~~DIte~k~ 138 (318)
..-...|. +......|+++ +|.+.|++++..|+....+
T Consensus 161 ~~~~~tg~--~~i~~a~PV~~--~G~viGVv~v~i~l~~l~~ 198 (305)
T 3e4o_A 161 AMGTVSKR--PGLYISRRVDG--PGGPLGVIVAKLEFDGVEA 198 (305)
T ss_dssp EECTTTCC--EEEEEEEEEEE--TTEEEEEEEEEECCHHHHH
T ss_pred EEecCCCC--EEEEEEEEEcc--CCeEEEEEEEEEcHHHHHH
Confidence 12223344 34456788887 5999999998877765433
Done!