Query 021028
Match_columns 318
No_of_seqs 130 out of 1440
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 07:02:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02886 aminoacyl-tRNA ligase 100.0 8.7E-74 1.9E-78 559.3 26.4 261 57-317 25-285 (389)
2 COG0180 TrpS Tryptophanyl-tRNA 100.0 5.6E-68 1.2E-72 504.8 20.8 222 77-315 4-228 (314)
3 KOG2713 Mitochondrial tryptoph 100.0 5.3E-68 1.2E-72 492.1 18.8 230 78-318 13-246 (347)
4 PRK12284 tryptophanyl-tRNA syn 100.0 1.3E-66 2.8E-71 512.7 22.7 223 78-316 2-232 (431)
5 PRK00927 tryptophanyl-tRNA syn 100.0 3.4E-66 7.3E-71 499.6 22.1 225 79-316 2-226 (333)
6 PRK12283 tryptophanyl-tRNA syn 100.0 3.1E-65 6.8E-70 499.1 23.5 233 78-316 2-294 (398)
7 PRK12556 tryptophanyl-tRNA syn 100.0 2.5E-65 5.4E-70 493.1 22.1 223 78-317 3-233 (332)
8 TIGR00233 trpS tryptophanyl-tR 100.0 4.5E-64 9.8E-69 483.9 21.4 221 77-316 1-223 (328)
9 cd00806 TrpRS_core catalytic c 100.0 2.3E-63 4.9E-68 469.7 21.4 221 80-317 1-223 (280)
10 PRK12282 tryptophanyl-tRNA syn 100.0 6E-63 1.3E-67 476.9 22.7 222 78-315 2-225 (333)
11 PRK12285 tryptophanyl-tRNA syn 100.0 1.2E-59 2.6E-64 458.9 20.7 211 77-317 65-283 (368)
12 PRK08560 tyrosyl-tRNA syntheta 100.0 7.2E-58 1.6E-62 441.0 19.1 211 77-316 29-245 (329)
13 PTZ00126 tyrosyl-tRNA syntheta 100.0 4.6E-57 1E-61 442.6 20.0 215 77-316 65-288 (383)
14 PF00579 tRNA-synt_1b: tRNA sy 100.0 3.1E-54 6.7E-59 408.0 17.9 220 77-317 4-230 (292)
15 cd00395 Tyr_Trp_RS_core cataly 100.0 1.4E-52 3.1E-57 395.0 20.6 206 80-312 1-227 (273)
16 cd00805 TyrRS_core catalytic c 100.0 6.8E-53 1.5E-57 396.2 17.7 206 79-314 1-225 (269)
17 PTZ00348 tyrosyl-tRNA syntheta 100.0 2E-52 4.4E-57 432.4 20.2 216 77-316 31-253 (682)
18 PLN02486 aminoacyl-tRNA ligase 100.0 4.3E-48 9.3E-53 379.0 20.6 209 77-316 72-297 (383)
19 PRK05912 tyrosyl-tRNA syntheta 100.0 5.1E-46 1.1E-50 367.8 19.6 208 77-315 32-263 (408)
20 PRK13354 tyrosyl-tRNA syntheta 100.0 4.1E-44 8.9E-49 354.3 18.1 204 77-311 32-258 (410)
21 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 5.8E-44 1.3E-48 350.0 17.1 210 78-316 30-262 (377)
22 KOG2144 Tyrosyl-tRNA synthetas 100.0 1.2E-38 2.5E-43 297.0 11.1 211 77-316 33-253 (360)
23 COG0162 TyrS Tyrosyl-tRNA synt 100.0 4.3E-36 9.4E-41 295.0 14.8 212 78-315 32-263 (401)
24 KOG2145 Cytoplasmic tryptophan 100.0 1.8E-33 4E-38 262.5 10.4 207 77-314 84-308 (397)
25 PTZ00348 tyrosyl-tRNA syntheta 100.0 9.3E-32 2E-36 278.9 15.2 172 109-315 407-586 (682)
26 KOG2623 Tyrosyl-tRNA synthetas 99.8 3.5E-20 7.6E-25 179.3 13.7 195 78-299 63-286 (467)
27 cd00808 GluRS_core catalytic c 99.7 2.2E-16 4.8E-21 146.6 11.3 170 86-309 9-190 (239)
28 cd00802 class_I_aaRS_core cata 99.5 1.3E-13 2.8E-18 117.5 10.9 63 204-288 78-143 (143)
29 cd00418 GlxRS_core catalytic c 99.3 5.5E-12 1.2E-16 116.7 10.2 167 86-309 9-181 (230)
30 PRK01406 gltX glutamyl-tRNA sy 99.1 9.5E-10 2.1E-14 111.6 11.4 173 86-288 12-256 (476)
31 PRK05710 glutamyl-Q tRNA(Asp) 99.0 1.8E-09 4E-14 103.5 10.8 173 86-289 13-242 (299)
32 PRK14895 gltX glutamyl-tRNA sy 99.0 4.2E-09 9.2E-14 107.4 11.8 179 80-289 4-246 (513)
33 TIGR00464 gltX_bact glutamyl-t 98.9 7E-09 1.5E-13 105.1 12.4 178 86-298 9-252 (470)
34 TIGR03838 queuosine_YadB gluta 98.8 5.3E-08 1.2E-12 92.4 12.5 189 86-307 8-251 (272)
35 COG0008 GlnS Glutamyl- and glu 98.8 2.1E-08 4.6E-13 101.5 9.5 178 81-289 10-256 (472)
36 PRK12410 glutamylglutaminyl-tR 98.8 3.2E-08 6.9E-13 99.3 10.0 88 86-182 7-104 (433)
37 PLN03233 putative glutamate-tR 98.7 4.9E-08 1.1E-12 99.8 9.7 176 80-288 11-251 (523)
38 cd00674 LysRS_core_class_I cat 98.7 2.1E-07 4.6E-12 91.3 13.6 83 78-163 20-132 (353)
39 PRK00750 lysK lysyl-tRNA synth 98.7 1.6E-07 3.5E-12 96.2 12.6 59 215-299 233-293 (510)
40 PTZ00402 glutamyl-tRNA synthet 98.7 1.1E-07 2.3E-12 98.5 10.8 178 80-289 52-294 (601)
41 PF00749 tRNA-synt_1c: tRNA sy 98.7 2.8E-07 6.1E-12 89.0 12.5 190 86-308 9-272 (314)
42 PLN02627 glutamyl-tRNA synthet 98.6 4.5E-07 9.7E-12 93.0 14.3 96 80-182 47-159 (535)
43 cd00807 GlnRS_core catalytic c 98.6 1.4E-07 3E-12 87.9 9.6 156 86-289 9-170 (238)
44 PRK12558 glutamyl-tRNA synthet 98.6 5.1E-08 1.1E-12 98.1 7.1 88 86-182 10-107 (445)
45 PRK04156 gltX glutamyl-tRNA sy 98.6 2.2E-07 4.8E-12 96.0 11.8 181 78-288 101-343 (567)
46 cd09287 GluRS_non_core catalyt 98.6 3.9E-07 8.4E-12 85.0 10.1 159 82-288 5-171 (240)
47 PLN02907 glutamate-tRNA ligase 98.5 4.8E-07 1.1E-11 96.1 10.6 153 80-241 213-430 (722)
48 PLN02859 glutamine-tRNA ligase 98.4 4.8E-07 1E-11 96.1 8.5 177 80-289 264-505 (788)
49 PRK05347 glutaminyl-tRNA synth 98.1 6.7E-06 1.5E-10 84.8 7.9 94 81-182 30-135 (554)
50 TIGR00440 glnS glutaminyl-tRNA 98.1 8.5E-06 1.8E-10 83.6 7.8 89 86-182 8-106 (522)
51 PTZ00437 glutaminyl-tRNA synth 98.0 9.2E-06 2E-10 83.9 6.8 93 80-181 51-155 (574)
52 PRK14703 glutaminyl-tRNA synth 98.0 1.3E-05 2.8E-10 85.7 8.0 95 80-182 31-137 (771)
53 TIGR00467 lysS_arch lysyl-tRNA 98.0 4.7E-05 1E-09 78.3 10.6 81 78-161 19-129 (515)
54 TIGR00463 gltX_arch glutamyl-t 98.0 2E-05 4.3E-10 81.6 7.7 93 79-180 92-196 (560)
55 cd02156 nt_trans nucleotidyl t 97.9 3.3E-05 7.1E-10 62.5 7.2 54 81-138 2-55 (105)
56 PRK01611 argS arginyl-tRNA syn 97.9 0.00012 2.6E-09 75.1 11.6 191 81-303 116-339 (507)
57 cd00671 ArgRS_core catalytic c 97.8 6.7E-05 1.4E-09 68.3 8.2 155 82-242 6-185 (212)
58 PF01921 tRNA-synt_1f: tRNA sy 97.8 5.2E-05 1.1E-09 74.6 7.6 82 77-161 23-135 (360)
59 COG1384 LysS Lysyl-tRNA synthe 97.7 5E-05 1.1E-09 77.3 6.4 82 77-161 19-132 (521)
60 cd00668 Ile_Leu_Val_MetRS_core 97.7 0.00047 1E-08 66.1 11.7 64 86-150 10-100 (312)
61 PRK00260 cysS cysteinyl-tRNA s 97.6 0.00069 1.5E-08 68.8 11.8 75 76-150 21-110 (463)
62 cd00672 CysRS_core catalytic c 97.5 0.0013 2.7E-08 60.4 11.9 71 79-149 22-105 (213)
63 cd00812 LeuRS_core catalytic c 97.5 0.00038 8.2E-09 67.1 8.5 65 86-150 10-87 (314)
64 KOG1149 Glutamyl-tRNA syntheta 96.9 0.0011 2.5E-08 66.3 5.3 96 79-181 34-146 (524)
65 PLN02946 cysteine-tRNA ligase 96.7 0.038 8.2E-07 57.7 14.4 74 75-149 77-165 (557)
66 TIGR00435 cysS cysteinyl-tRNA 96.4 0.052 1.1E-06 55.4 12.9 71 80-150 24-107 (465)
67 PRK00133 metG methionyl-tRNA s 94.7 0.1 2.2E-06 55.6 7.8 74 77-150 2-89 (673)
68 KOG1147 Glutamyl-tRNA syntheta 94.6 0.11 2.4E-06 53.7 7.7 73 80-161 200-276 (712)
69 COG0143 MetG Methionyl-tRNA sy 94.6 0.12 2.7E-06 53.9 8.1 73 78-150 6-92 (558)
70 PF09334 tRNA-synt_1g: tRNA sy 93.4 0.32 6.8E-06 48.6 8.1 66 86-151 9-87 (391)
71 PLN02224 methionine-tRNA ligas 91.9 0.68 1.5E-05 49.1 8.6 74 78-151 70-157 (616)
72 PLN02610 probable methionyl-tR 91.1 1.1 2.4E-05 48.9 9.5 74 78-151 18-106 (801)
73 KOG1148 Glutaminyl-tRNA synthe 90.6 0.37 8.1E-06 50.5 5.0 101 78-187 246-358 (764)
74 PRK00390 leuS leucyl-tRNA synt 90.6 1.1 2.3E-05 48.9 8.8 72 78-150 33-119 (805)
75 PRK12268 methionyl-tRNA synthe 90.3 0.76 1.7E-05 47.6 7.1 71 80-151 5-92 (556)
76 TIGR00398 metG methionyl-tRNA 90.2 0.57 1.2E-05 48.2 6.1 65 86-150 9-86 (530)
77 PRK11893 methionyl-tRNA synthe 89.5 1.4 3.1E-05 44.8 8.2 66 86-151 11-89 (511)
78 PRK12267 methionyl-tRNA synthe 89.4 0.98 2.1E-05 47.8 7.1 65 86-150 14-91 (648)
79 PLN02563 aminoacyl-tRNA ligase 89.1 2.2 4.7E-05 47.6 9.7 74 78-151 111-201 (963)
80 cd00814 MetRS_core catalytic c 88.6 0.9 1.9E-05 43.8 5.7 65 87-151 11-88 (319)
81 cd00818 IleRS_core catalytic c 87.9 1.1 2.5E-05 43.6 6.0 36 87-122 12-52 (338)
82 TIGR00396 leuS_bact leucyl-tRN 87.6 2.3 5E-05 46.7 8.7 71 79-149 31-115 (842)
83 PRK14536 cysS cysteinyl-tRNA s 87.5 3.3 7.2E-05 42.8 9.3 75 75-150 20-119 (490)
84 PRK11893 methionyl-tRNA synthe 86.6 0.38 8.2E-06 49.0 1.9 59 216-299 254-312 (511)
85 cd00817 ValRS_core catalytic c 86.5 0.56 1.2E-05 46.5 3.0 35 86-120 11-50 (382)
86 TIGR00456 argS arginyl-tRNA sy 86.2 0.72 1.6E-05 48.2 3.8 66 217-309 329-395 (566)
87 PRK05743 ileS isoleucyl-tRNA s 85.6 0.65 1.4E-05 51.3 3.2 58 214-297 543-603 (912)
88 cd00818 IleRS_core catalytic c 85.3 0.69 1.5E-05 45.1 3.0 17 279-299 296-312 (338)
89 COG0495 LeuS Leucyl-tRNA synth 84.2 1.2 2.5E-05 48.7 4.3 74 77-151 34-124 (814)
90 cd00817 ValRS_core catalytic c 83.9 1.8 3.9E-05 42.9 5.3 60 215-299 295-356 (382)
91 PRK12418 cysteinyl-tRNA synthe 82.3 1.2 2.5E-05 44.7 3.2 70 205-298 203-273 (384)
92 PF00133 tRNA-synt_1: tRNA syn 81.9 1.1 2.5E-05 47.0 3.1 59 215-297 513-572 (601)
93 cd00814 MetRS_core catalytic c 81.8 1 2.2E-05 43.4 2.5 59 216-299 235-293 (319)
94 COG0018 ArgS Arginyl-tRNA synt 80.8 1.7 3.8E-05 45.7 4.0 70 216-308 335-405 (577)
95 TIGR00392 ileS isoleucyl-tRNA 80.7 1.3 2.9E-05 48.4 3.2 14 215-228 563-576 (861)
96 PLN02286 arginine-tRNA ligase 80.5 2 4.4E-05 45.1 4.4 70 217-306 329-398 (576)
97 PRK12300 leuS leucyl-tRNA synt 80.3 1.2 2.7E-05 49.1 2.8 59 215-297 529-588 (897)
98 TIGR00234 tyrS tyrosyl-tRNA sy 80.1 1.3 2.8E-05 44.1 2.6 8 294-301 229-236 (377)
99 PRK14900 valS valyl-tRNA synth 79.6 1.4 3E-05 49.6 2.9 61 215-299 490-551 (1052)
100 TIGR03447 mycothiol_MshC cyste 78.1 1.8 3.8E-05 43.8 2.9 72 77-148 35-120 (411)
101 PTZ00419 valyl-tRNA synthetase 78.0 3 6.5E-05 46.6 4.9 45 78-122 61-111 (995)
102 PRK05729 valS valyl-tRNA synth 77.5 1.6 3.5E-05 47.9 2.6 59 215-298 472-532 (874)
103 PRK13208 valS valyl-tRNA synth 77.1 3.1 6.7E-05 45.2 4.6 43 78-120 39-86 (800)
104 PRK13208 valS valyl-tRNA synth 76.5 2.4 5.1E-05 46.2 3.5 60 215-298 485-545 (800)
105 PRK12267 methionyl-tRNA synthe 76.3 1.5 3.2E-05 46.5 1.9 59 216-299 254-312 (648)
106 TIGR00422 valS valyl-tRNA synt 75.8 6.9 0.00015 43.0 6.9 44 78-121 34-82 (861)
107 TIGR00395 leuS_arch leucyl-tRN 75.8 1.9 4.1E-05 47.9 2.5 60 215-298 572-632 (938)
108 PLN02959 aminoacyl-tRNA ligase 75.0 2.5 5.5E-05 47.7 3.3 61 215-298 670-730 (1084)
109 PLN02843 isoleucyl-tRNA synthe 74.6 5.5 0.00012 44.5 5.8 74 78-151 33-136 (974)
110 PRK14534 cysS cysteinyl-tRNA s 74.2 7.9 0.00017 40.0 6.4 72 78-150 21-117 (481)
111 PLN02660 pantoate--beta-alanin 73.2 10 0.00022 36.6 6.5 67 215-311 145-211 (284)
112 PRK13804 ileS isoleucyl-tRNA s 73.2 3 6.6E-05 46.4 3.4 16 213-228 580-595 (961)
113 COG0018 ArgS Arginyl-tRNA synt 72.8 3.7 8E-05 43.3 3.7 42 82-123 123-170 (577)
114 PRK12268 methionyl-tRNA synthe 71.8 2.8 6E-05 43.4 2.5 57 218-298 289-346 (556)
115 TIGR00422 valS valyl-tRNA synt 71.7 3.2 7E-05 45.5 3.1 59 215-298 477-537 (861)
116 PLN02943 aminoacyl-tRNA ligase 71.3 3.6 7.7E-05 45.9 3.4 60 215-299 535-596 (958)
117 COG0525 ValS Valyl-tRNA synthe 70.8 2.8 6.1E-05 46.1 2.4 37 87-123 44-84 (877)
118 PRK12451 arginyl-tRNA syntheta 70.5 4.9 0.00011 42.1 4.0 66 216-305 325-390 (562)
119 PRK05729 valS valyl-tRNA synth 70.2 6.6 0.00014 43.3 5.1 44 78-121 37-85 (874)
120 PF00750 tRNA-synt_1d: tRNA sy 70.2 5.2 0.00011 39.3 3.9 73 216-309 239-311 (354)
121 PF01406 tRNA-synt_1e: tRNA sy 69.7 4.2 9.1E-05 39.5 3.1 75 76-150 6-94 (300)
122 cd02168 NMNAT_Nudix Nicotinami 69.4 23 0.00049 31.6 7.5 75 85-169 8-85 (181)
123 PRK14536 cysS cysteinyl-tRNA s 69.0 3.3 7.1E-05 42.8 2.3 69 205-298 222-291 (490)
124 TIGR03447 mycothiol_MshC cyste 68.9 42 0.0009 34.1 10.1 70 205-298 230-300 (411)
125 PLN02381 valyl-tRNA synthetase 68.7 5.9 0.00013 44.8 4.4 59 215-298 607-667 (1066)
126 PLN02843 isoleucyl-tRNA synthe 68.1 3.5 7.6E-05 46.0 2.5 16 213-228 561-576 (974)
127 TIGR00456 argS arginyl-tRNA sy 67.6 5.4 0.00012 41.7 3.6 40 80-119 116-161 (566)
128 PTZ00419 valyl-tRNA synthetase 67.5 5.7 0.00012 44.4 4.0 58 215-297 537-596 (995)
129 KOG0436 Methionyl-tRNA synthet 67.1 32 0.00069 35.3 8.7 80 74-159 41-133 (578)
130 PTZ00399 cysteinyl-tRNA-synthe 66.9 3.4 7.3E-05 44.2 1.9 70 205-298 257-327 (651)
131 PRK06039 ileS isoleucyl-tRNA s 66.7 4.8 0.0001 44.9 3.1 15 215-229 544-558 (975)
132 PLN02224 methionine-tRNA ligas 65.7 4.6 0.0001 42.9 2.7 60 215-299 320-379 (616)
133 TIGR00398 metG methionyl-tRNA 65.3 5.5 0.00012 41.0 3.1 55 219-299 285-340 (530)
134 PRK14535 cysS cysteinyl-tRNA s 64.9 35 0.00075 37.0 8.9 77 73-150 243-334 (699)
135 COG0495 LeuS Leucyl-tRNA synth 63.6 5.6 0.00012 43.6 2.9 65 216-298 526-591 (814)
136 PRK12451 arginyl-tRNA syntheta 63.3 6.8 0.00015 41.0 3.4 38 82-119 119-162 (562)
137 cd02166 NMNAT_Archaea Nicotina 62.9 41 0.00089 29.3 7.8 67 85-160 8-77 (163)
138 PF00750 tRNA-synt_1d: tRNA sy 62.6 3.4 7.3E-05 40.7 0.9 41 82-122 26-72 (354)
139 PRK14900 valS valyl-tRNA synth 62.6 5.9 0.00013 44.6 3.0 44 78-121 49-97 (1052)
140 PLN02882 aminoacyl-tRNA ligase 62.6 7.1 0.00015 44.5 3.6 24 215-239 566-589 (1159)
141 PLN02563 aminoacyl-tRNA ligase 62.6 5.7 0.00012 44.4 2.8 27 215-241 615-642 (963)
142 COG0215 CysS Cysteinyl-tRNA sy 62.6 5.1 0.00011 41.1 2.2 71 205-299 210-281 (464)
143 PLN02286 arginine-tRNA ligase 61.8 6.1 0.00013 41.6 2.7 38 82-119 123-166 (576)
144 PF02662 FlpD: Methyl-viologen 61.4 41 0.00089 28.2 7.2 71 83-159 32-103 (124)
145 PLN02381 valyl-tRNA synthetase 61.2 7.8 0.00017 43.8 3.5 44 78-121 129-177 (1066)
146 PRK12418 cysteinyl-tRNA synthe 60.7 44 0.00096 33.6 8.4 73 78-150 9-96 (384)
147 PLN02610 probable methionyl-tR 60.3 3.4 7.5E-05 45.2 0.6 57 219-298 304-360 (801)
148 PF00133 tRNA-synt_1: tRNA syn 59.2 11 0.00024 39.7 4.1 45 78-122 24-74 (601)
149 TIGR00396 leuS_bact leucyl-tRN 58.4 7.3 0.00016 42.9 2.7 23 215-237 519-542 (842)
150 PRK00133 metG methionyl-tRNA s 56.4 8.4 0.00018 41.2 2.7 52 219-298 287-341 (673)
151 TIGR00392 ileS isoleucyl-tRNA 55.7 9.7 0.00021 41.8 3.1 46 77-122 36-87 (861)
152 KOG0435 Leucyl-tRNA synthetase 55.2 20 0.00044 38.7 5.1 77 74-151 54-147 (876)
153 TIGR00018 panC pantoate--beta- 54.1 41 0.00088 32.4 6.7 27 215-241 142-168 (282)
154 PF09334 tRNA-synt_1g: tRNA sy 51.9 3.1 6.7E-05 41.6 -1.4 55 219-298 285-339 (391)
155 PRK00380 panC pantoate--beta-a 49.6 44 0.00096 32.1 6.2 28 215-242 139-166 (281)
156 PRK05743 ileS isoleucyl-tRNA s 48.9 11 0.00023 41.9 2.1 74 78-151 50-152 (912)
157 PRK14534 cysS cysteinyl-tRNA s 47.9 10 0.00022 39.1 1.7 66 208-298 225-291 (481)
158 PRK00390 leuS leucyl-tRNA synt 47.7 12 0.00027 40.8 2.4 23 215-237 522-545 (805)
159 TIGR00395 leuS_arch leucyl-tRN 47.1 9.5 0.00021 42.5 1.4 39 78-116 26-69 (938)
160 PLN02943 aminoacyl-tRNA ligase 47.0 18 0.00038 40.5 3.4 44 78-121 89-137 (958)
161 COG0060 IleS Isoleucyl-tRNA sy 46.7 30 0.00064 38.7 5.0 17 217-233 556-572 (933)
162 PTZ00427 isoleucine-tRNA ligas 46.0 17 0.00037 41.7 3.2 16 215-230 672-687 (1205)
163 PRK06039 ileS isoleucyl-tRNA s 41.2 22 0.00047 39.9 3.0 45 78-122 42-92 (975)
164 PLN02959 aminoacyl-tRNA ligase 40.5 15 0.00033 41.6 1.6 29 87-115 56-88 (1084)
165 PTZ00427 isoleucine-tRNA ligas 40.1 26 0.00056 40.3 3.4 45 78-122 103-153 (1205)
166 PRK13804 ileS isoleucyl-tRNA s 39.4 19 0.00041 40.3 2.2 45 78-122 55-105 (961)
167 PTZ00399 cysteinyl-tRNA-synthe 37.0 2.1E+02 0.0046 30.7 9.5 74 77-151 59-149 (651)
168 COG0143 MetG Methionyl-tRNA sy 36.7 15 0.00032 38.7 0.8 31 261-299 316-346 (558)
169 COG1908 FrhD Coenzyme F420-red 36.2 1.3E+02 0.0029 25.7 6.2 90 60-159 11-104 (132)
170 PRK01153 nicotinamide-nucleoti 33.6 1.9E+02 0.004 25.6 7.2 66 85-160 9-78 (174)
171 PLN02882 aminoacyl-tRNA ligase 32.1 31 0.00066 39.5 2.4 45 78-122 39-89 (1159)
172 COG4320 Uncharacterized protei 31.2 43 0.00092 33.3 2.9 26 89-120 63-88 (410)
173 KOG0432 Valyl-tRNA synthetase 30.4 40 0.00086 37.5 2.7 37 88-124 87-127 (995)
174 COG0525 ValS Valyl-tRNA synthe 28.7 20 0.00043 39.7 0.1 20 279-305 522-541 (877)
175 cd00560 PanC Pantoate-beta-ala 28.3 71 0.0015 30.7 3.8 26 216-241 141-166 (277)
176 PRK14535 cysS cysteinyl-tRNA s 27.5 20 0.00044 38.6 0.0 33 205-239 435-468 (699)
177 PRK05379 bifunctional nicotina 26.0 3.6E+02 0.0079 26.3 8.5 70 79-159 8-81 (340)
178 PF01406 tRNA-synt_1e: tRNA sy 25.2 4E+02 0.0086 26.0 8.3 69 205-299 195-265 (300)
179 PLN02413 choline-phosphate cyt 25.1 2E+02 0.0043 28.1 6.2 33 68-105 17-52 (294)
180 PF01467 CTP_transf_2: Cytidyl 24.1 3.7E+02 0.008 21.6 7.1 33 90-123 8-40 (157)
181 KOG2007 Cysteinyl-tRNA synthet 23.8 35 0.00076 35.6 0.9 35 203-239 245-280 (586)
182 PRK13793 nicotinamide-nucleoti 22.3 3E+02 0.0064 25.2 6.5 78 79-169 6-87 (196)
183 KOG1954 Endocytosis/signaling 20.3 1.8E+02 0.004 29.7 5.0 21 101-123 175-195 (532)
No 1
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=8.7e-74 Score=559.27 Aligned_cols=261 Identities=80% Similarity=1.217 Sum_probs=237.7
Q ss_pred ceeeeccCCCCCCCCCCCCCCCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHH
Q 021028 57 RCYCNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATR 136 (318)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~ 136 (318)
+|+++.++..+.++.+++.-.++++|+||+|||.+|||||+|++++|++||++++++|+||||||+|.+.++++++++++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~m~~~~v~sGiqPSG~lHLGnylGai~~~v~lQ~~~~~~~~IADlHAlt~~~~~~~lr~~~~ 104 (389)
T PLN02886 25 CCSAATAATAPEKEAPPKVARKKRVVSGVQPTGSIHLGNYLGAIKNWVALQETYDTFFCVVDLHAITLPHDPRELGKATR 104 (389)
T ss_pred hhhhhhccCCCccCCCcccCCCCeEEEEECCCCccHHHHHHHHHHHHHHHhccCCEEEEEecHHHhhCCCCHHHHHHHHH
Confidence 34444444555555555555677899999999999999999999999999999999999999999999889999999999
Q ss_pred HHHHHHHHcCCCCCceEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhccc
Q 021028 137 ETAAIYLACGIDNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQ 216 (318)
Q Consensus 137 ~~~~~llA~GiDpek~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~ 216 (318)
+++++|+|+||||+|+.||+||++++|.+|+|+|+|.+++++|+|+++||++.+..+.+++++|+|+||+|||||||+|+
T Consensus 105 ~~~a~~lA~GlDP~ks~if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~~~~~~~gll~YPvLqAADILl~~ 184 (389)
T PLN02886 105 STAAIYLACGIDPSKASVFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAGDENVGVGLLTYPVLMASDILLYQ 184 (389)
T ss_pred HHHHHHHHcCcCccceEEEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcCCCCCChHhhhChHHHHhhhhhcC
Confidence 99999999999999999999999999999999999999999999999999998776546789999999999999999999
Q ss_pred ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEe
Q 021028 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~ 296 (318)
+|+||||+||+||+||+||||+|||+.||.+..+++|++++.+|++|++++++.+++||+|+||++|||||+|+++|+|+
T Consensus 185 a~~VPVG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~ 264 (389)
T PLN02886 185 ADLVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRIN 264 (389)
T ss_pred CCeEEEccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEE
Confidence 99999999999999999999999999998766667777777889999999987668999998888899999998789999
Q ss_pred ccCCHHHHHHhhccccCCCCC
Q 021028 297 LLDPKDVIANKIKRCKTDSSA 317 (318)
Q Consensus 297 L~D~pe~I~~KI~~A~Td~~~ 317 (318)
|+|+||+|++|||+|+||+.+
T Consensus 265 L~Ds~e~I~kKI~~a~TD~~~ 285 (389)
T PLN02886 265 LLDPPDVIANKIKRCKTDSFP 285 (389)
T ss_pred ecCCHHHHHHHHhcCCCCCCC
Confidence 999999999999999999864
No 2
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.6e-68 Score=504.79 Aligned_cols=222 Identities=57% Similarity=0.908 Sum_probs=210.7
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhcc-CcEEEEEeccceecCCCCH--HHHHHHHHHHHHHHHHcCCCCCceE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS-YETLFFIVDLHAITLPYDT--QQLSKATRETAAIYLACGIDNSKAS 153 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g-~~v~ilIaD~hA~t~~~d~--~~i~~~~~~~~~~llA~GiDpek~~ 153 (318)
.+++++||++|||.+|||||+|++++|+.+|+. ++++|+|||+||+|.+.++ +.+++++++++++|+|+||||+|+.
T Consensus 4 ~~~~vlSG~~PSG~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k~~ 83 (314)
T COG0180 4 KKFRVLSGIQPSGKLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEKST 83 (314)
T ss_pred CCceEEecCCCCCCcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccccE
Confidence 578999999999999999999999999999997 5999999999999997765 8899999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHH
Q 021028 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (318)
Q Consensus 154 i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~ 233 (318)
||+||++++|.+|.|+|+|.+++++|+|+.+||++..+.+ +.+++|+|.||+|||||||+|++++||||.||+||+||+
T Consensus 84 if~QS~v~e~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~-~~~~~Gl~~YPvlqAADILl~~a~~VPVG~DQ~qHleLt 162 (314)
T COG0180 84 IFLQSEVPEHAELAWLLSCVTNFGELERMTQFKDKSAKKG-ESIPIGLLTYPVLQAADILLYQATLVPVGEDQDQHLELT 162 (314)
T ss_pred EEEccCchHHHHHHHHHHccCcHHHHHhhcCcchhhhccc-ccccccchhccHHHHHHhhhccCCeeccCCCchHHHHHH
Confidence 9999999999999999999999999999999999888765 689999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccC
Q 021028 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (318)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~T 313 (318)
||||+|||+.||. +|++|+++++.. +++|||+++ +|||||+|+ |+|+|+|+|++|++||++|.|
T Consensus 163 RDiA~rfn~~y~~------------~f~~P~~~~~~~-~~i~gL~g~-~KMSkS~~n--s~I~L~D~~~~i~kKI~~~~t 226 (314)
T COG0180 163 RDIARRFNHLYGE------------VFPLPEALISKV-ARLPGLDGP-GKMSKSDPN--SAIFLLDDPKTIRKKIKKAAT 226 (314)
T ss_pred HHHHHHHHhhcCC------------ccCCccccccCC-CcccCCCCC-CcccccCCC--CeeeccCCHHHHHHHHHHhcc
Confidence 9999999999874 589999999976 799999666 999999984 899999999999999999999
Q ss_pred CC
Q 021028 314 DS 315 (318)
Q Consensus 314 d~ 315 (318)
|+
T Consensus 227 d~ 228 (314)
T COG0180 227 DG 228 (314)
T ss_pred CC
Confidence 98
No 3
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-68 Score=492.07 Aligned_cols=230 Identities=58% Similarity=0.863 Sum_probs=219.2
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhcc----CcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNS----YETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS 153 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g----~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~ 153 (318)
+.++++||||||.+|||||+|++++|++||+. ..++|.|+|+||+|.|.|+.++++++.++++.++||||||+|+.
T Consensus 13 ~~rvfSGIQPTG~~HLGNYLGai~~Wv~LQ~~~d~~~~~~f~vvDlHaITvp~dp~~lrq~~~dm~A~lLAcGIdp~Ks~ 92 (347)
T KOG2713|consen 13 PKRVFSGIQPTGIPHLGNYLGAIKPWVQLQNEYDKNILVLFSVVDLHAITVPQDPAELRQATHDMAASLLACGIDPEKSS 92 (347)
T ss_pred cceeEeccCCCCCchhhhhhhhhhHHHHHHHHhcCCceEEEEEeeceeecCCCChHHHHHHHHHHHHHHHHhccCcccce
Confidence 78999999999999999999999999999984 34799999999999999999999999999999999999999999
Q ss_pred EEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHH
Q 021028 154 VFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (318)
Q Consensus 154 i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~ 233 (318)
+|+||++++|.|+.|+|+|.+++++|+|++|||++..+.+.+++++|+|+||+|||||||+|+++.||||+||.||+||+
T Consensus 93 lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~~~~~~vGLftYPvLqAADILLYksThVPVGeDQsQHleL~ 172 (347)
T KOG2713|consen 93 LFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFKVGDVPVGLFTYPVLQAADILLYKSTHVPVGEDQSQHLELA 172 (347)
T ss_pred eeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhccCccceeeecchhHhhhhHhhhccccccCCccHHHHHHHH
Confidence 99999999999999999999999999999999999876666789999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccC
Q 021028 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (318)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~T 313 (318)
|+||++||+.||++ +|++|+.++...++++++|.||.+|||||+|++.++|+|+|+|++|.+||++|.|
T Consensus 173 r~lA~~fN~~Y~~~-----------~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~T 241 (347)
T KOG2713|consen 173 RHLAQAFNKTYGTE-----------IFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIKKAQT 241 (347)
T ss_pred HHHHHHHhhhccCe-----------eecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHHHHhc
Confidence 99999999999976 4999999998755899999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 021028 314 DSSAG 318 (318)
Q Consensus 314 d~~~~ 318 (318)
|...|
T Consensus 242 D~~~~ 246 (347)
T KOG2713|consen 242 DNTSG 246 (347)
T ss_pred ccccc
Confidence 98654
No 4
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.3e-66 Score=512.68 Aligned_cols=223 Identities=40% Similarity=0.671 Sum_probs=206.6
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~--g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
..++||||+|||.+|||||+|++++|+++|+ +++++|+||||||+|++.+++++++++++++++|+|+||||+|+.||
T Consensus 2 ~~rvlSGiqPTG~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT~~~dp~~lr~~~~e~aa~~LA~GlDPek~~if 81 (431)
T PRK12284 2 TTRVLTGITTTGTPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALIKCDDPARIQRSTLEIAATWLAAGLDPERVTFY 81 (431)
T ss_pred ceEEEEEecCCCcchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhccCCCCHHHHHHHHHHHHHHHHHhCCCccceEEE
Confidence 4589999999999999999999999999975 89999999999999988899999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhh---C---CCCcccccchhhHHHhhhhhcccccEEEecCcchHH
Q 021028 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKA---G---GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (318)
Q Consensus 156 ~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~---~---~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~h 229 (318)
+||++++|.||+|+|+|.+++++|+|+++||++..+. + .+++++|+|+||+|||||||+|++|+||||.||+||
T Consensus 82 ~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAADILly~ad~VPVG~DQ~qH 161 (431)
T PRK12284 82 RQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAADILMFNAHKVPVGRDQIQH 161 (431)
T ss_pred ECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhhhhhcCCCEEEEcchhHHH
Confidence 9999999999999999999999999999999865432 1 145899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhc
Q 021028 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (318)
Q Consensus 230 i~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 309 (318)
+||+||||+|||+.||.+ +|++|+.++...+++|||| || +|||||+ +|+|+|+|+|++|++|||
T Consensus 162 lELaRdIA~rFN~~yg~~-----------~F~~Pe~~i~~~~~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 162 IEMARDIAQRFNHLYGGE-----------FFVLPEAVIEESVATLPGL-DG-RKMSKSY---DNTIPLFAPREELKKAIF 225 (431)
T ss_pred HHHHHHHHHHHhhhcCCc-----------ccCCCccccccccccccCC-CC-ccccCCC---CCEeeecCCHHHHHHHHh
Confidence 999999999999999753 4889999887666899999 66 7999998 489999999999999999
Q ss_pred cccCCCC
Q 021028 310 RCKTDSS 316 (318)
Q Consensus 310 ~A~Td~~ 316 (318)
+|+||+.
T Consensus 226 ~A~TDs~ 232 (431)
T PRK12284 226 SIVTDSR 232 (431)
T ss_pred cCCCCCC
Confidence 9999985
No 5
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.4e-66 Score=499.64 Aligned_cols=225 Identities=63% Similarity=1.016 Sum_probs=210.7
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS 158 (318)
+++|+||+|||.+|||||+|++++|++||++++++|+||||||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~v~~G~~PTG~lHLG~~~g~~~~~~~lQ~~~~~~~~IaD~ha~t~~~~~~~i~~~~~~~~~~~lA~GlDp~k~~if~qS 81 (333)
T PRK00927 2 KRVLSGIQPTGKLHLGNYLGAIKNWVELQDEYECFFCIADLHALTVPQDPEELRENTRELAADYLACGIDPEKSTIFVQS 81 (333)
T ss_pred CEEEEeeCCCccchHHhHHHHHHHHHHHHhcCCeEEEEecHHHHhCCCCHHHHHHHHHHHHHHHHeEccChhheEEEEeC
Confidence 68999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHH
Q 021028 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (318)
Q Consensus 159 ~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~ 238 (318)
+|++|.+++|++++.+++++|+|+.+|+++..+.+ +++++|+|+||+|||||||++++|+||||.||+||+||+||||+
T Consensus 82 ~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~~divpvG~DQ~~h~elaRdia~ 160 (333)
T PRK00927 82 HVPEHAELAWILNCITPLGELERMTQFKDKSAKQK-ENVSAGLFTYPVLMAADILLYKADLVPVGEDQKQHLELTRDIAR 160 (333)
T ss_pred CCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhccC-CCCCcHhhhcHHHHHHHHHhcCCCEEeeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999998764433 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 239 k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
|||++||. +|++|+++++..+++||||+++++|||||+|++.|+|+|+|+|++|++||++|+||+.
T Consensus 161 ~~n~~~~~------------~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~a~td~~ 226 (333)
T PRK00927 161 RFNNLYGE------------VFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKKAVTDSE 226 (333)
T ss_pred Hhhhhccc------------cCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHhCCCCCC
Confidence 99999874 4789999997666899999655569999998667999999999999999999999985
No 6
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=3.1e-65 Score=499.11 Aligned_cols=233 Identities=41% Similarity=0.733 Sum_probs=211.4
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~-d~~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.++|+||||||.+|||||+|++++|+++|++++++|+||||||+|++. +++++++++++++++|+|+||||+|+.||+
T Consensus 2 ~~~v~sGiqPSG~~HLGnylG~ik~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 2 PDRVLSGMRPTGRLHLGHYHGVLKNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 3579999999999999999999999999999999999999999999854 999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHH
Q 021028 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (318)
Q Consensus 157 qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rd 235 (318)
||++++|.+|+|+|+|.+++++|+|+.+||++..+.+ .++.++|+++||+|||||||+|++|+||||+||+||+||+||
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAADILl~~a~iVPVG~DQ~qHleLaRd 161 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSADILIYRAGLVPVGEDQVPHVEMTRE 161 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHHHHhcCCCEeeeccccHHHHHHHHH
Confidence 9999999999999999999999999999999876521 256899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccc----------------------------------------------------------cccCCCCC
Q 021028 236 LAERVNYLYGGRKW----------------------------------------------------------KKLGGRGG 257 (318)
Q Consensus 236 ia~k~n~~~g~~~~----------------------------------------------------------~~~~~~~~ 257 (318)
||+|||+.||.+.+ ...++.++
T Consensus 162 IA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (398)
T PRK12283 162 IARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRERLFGYLEGAGK 241 (398)
T ss_pred HHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhccccccccccCC
Confidence 99999999985210 01123455
Q ss_pred ccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 258 ~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
.+|++|+++++.. ++|||| || +|||||. +|+|+|+|+|++|++||++|+||+.
T Consensus 242 ~~~~~P~~~~~~~-~~I~gL-dg-~KMSKS~---~n~I~L~Ds~~~I~kKI~~a~TDs~ 294 (398)
T PRK12283 242 IILPEPQALLTEA-SKMPGL-DG-QKMSKSY---GNTIGLREDPESVTKKIRTMPTDPA 294 (398)
T ss_pred cccCCCcccccCC-CcccCC-CC-CcCCCCC---CCeeeCcCCHHHHHHHHHhCCCCCc
Confidence 6899999998664 999999 88 8999996 4899999999999999999999975
No 7
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2.5e-65 Score=493.14 Aligned_cols=223 Identities=41% Similarity=0.659 Sum_probs=204.4
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhc--cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~--g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
+.++|+||+|||.+|||||+|++++|+++|+ +++++|+||||||++.+.+++++++++++++++|+|+||||+|+.||
T Consensus 3 ~~~v~sGiqPTG~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHalt~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~if 82 (332)
T PRK12556 3 EKIMLTGIKPTGYPHLGNYIGAIKPALQMAKNYEGKALYFIADYHALNAVHDPEQFRSYTREVAATWLSLGLDPEDVIFY 82 (332)
T ss_pred CCEEEEEECCCCcchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhccCCCCHHHHHHHHHHHHHHHhheeecccceEEE
Confidence 4699999999999999999999999999986 45599999999999877899999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC------CCCcccccchhhHHHhhhhhcccccEEEecCcchHH
Q 021028 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG------GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (318)
Q Consensus 156 ~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~------~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~h 229 (318)
+||++++|.+|.|+++|.+++++|+|+.+||++..... .+++++|+++||+|||||||+|++|+||||+||+||
T Consensus 83 ~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADIl~~~~d~VpvG~DQ~qh 162 (332)
T PRK12556 83 RQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADILLFQATHVPVGKDQIQH 162 (332)
T ss_pred ECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhhhhccCCEEEeccccHHH
Confidence 99999999999999999999999999999998865321 235799999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhc
Q 021028 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (318)
Q Consensus 230 i~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 309 (318)
+||+||||+|||+.||. .|++|+.++++..+++||| || +|||||++ |+|+|+|+|++|++||+
T Consensus 163 leLtRdiA~rfn~~yg~------------~f~~P~~~~~~~~~~l~gL-dg-~KMSKS~~---n~I~L~D~p~~I~kKI~ 225 (332)
T PRK12556 163 IEIARDIATYFNHTFGD------------TFTLPEYVIQEEGAILPGL-DG-RKMSKSYG---NVIPLFAEQEKLRKLIF 225 (332)
T ss_pred HHHHHHHHHHHHHhccc------------cCCCceeccccccccccCC-CC-CCCCCCCC---CcccccCCHHHHHHHHH
Confidence 99999999999999975 3788998876555899999 77 79999984 78999999999999999
Q ss_pred cccCCCCC
Q 021028 310 RCKTDSSA 317 (318)
Q Consensus 310 ~A~Td~~~ 317 (318)
+|+||+.+
T Consensus 226 ka~Td~~~ 233 (332)
T PRK12556 226 KIKTDSSL 233 (332)
T ss_pred HhccCCCc
Confidence 99999853
No 8
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=4.5e-64 Score=483.93 Aligned_cols=221 Identities=50% Similarity=0.733 Sum_probs=206.1
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~--d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
.++++|+|++|||.+|||||+++++.|..+|.+++++|+||||||+|++. +++.+++++++++++|+|+||||+|++|
T Consensus 1 ~~~~v~~G~~PTG~~HlG~~l~~~~~~~~~q~~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 80 (328)
T TIGR00233 1 KKFRVLTGIQPSGKMHLGHYLGAIQTKWLQQFGVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKTFI 80 (328)
T ss_pred CCCEEEEeeCCCcHhHHHHHHHHHHHHHHHhCCCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhheEE
Confidence 36899999999999999999999999988888999999999999999865 7899999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHH
Q 021028 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (318)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~R 234 (318)
|+||++++|.++.|.++|.+++++|+|+.+||++.. .+++++|+|+||+|||||||++++|+||||.||+||+||+|
T Consensus 81 f~qS~~~e~~el~~~l~~~~t~~~l~r~~~~k~k~~---~~~~~~g~l~YP~lqaaDil~~~~d~vpvG~DQ~~h~elaR 157 (328)
T TIGR00233 81 FLQSDYPEHYELAWLLSCQVTFGELKRMTQFKDKSQ---AENVPIGLFSYPVLQAADILLYQADLVPVGIDQDQHLELTR 157 (328)
T ss_pred EEcCCcHHHHHHHHHHHccCCHHHHHhccCcchhcc---CCCCCchhhcchHHHHhhhhhcCCCeeecccccHHHHHHHH
Confidence 999999999999999999999999999999998752 25789999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCC
Q 021028 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (318)
Q Consensus 235 dia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td 314 (318)
|||+|||+.||. +|++|++++++..+.|+|| +| +|||||+|+ |+|+|+|+|++|++||++|+||
T Consensus 158 dia~r~n~~~~~------------~f~~P~~l~~~~~~~l~gl-~~-~KMSKS~~~--s~I~L~D~~e~I~~KI~~a~td 221 (328)
T TIGR00233 158 DLAERFNKKFKN------------FFPKPESLISKFFPRLMGL-SG-KKMSKSDPN--SAIFLTDTPKQIKKKIRKAATD 221 (328)
T ss_pred HHHHHhhhhcCc------------ccCCChhhhccccCCCCCC-CC-CcCCCCCCC--CeEeecCCHHHHHHHHHhcCCC
Confidence 999999999873 4789999998766789998 56 799999974 8999999999999999999999
Q ss_pred CC
Q 021028 315 SS 316 (318)
Q Consensus 315 ~~ 316 (318)
++
T Consensus 222 ~~ 223 (328)
T TIGR00233 222 GG 223 (328)
T ss_pred CC
Confidence 86
No 9
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=2.3e-63 Score=469.72 Aligned_cols=221 Identities=51% Similarity=0.838 Sum_probs=207.9
Q ss_pred eEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 80 ~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~-d~~~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
++|+|++|||.+|||||++++.+|++||+ |++++|+|||+||+|++. +++++++++++++++|+|+|+||+|+.||+|
T Consensus 1 ~i~tG~~PTG~lHLG~~~~al~~~~~lQ~ag~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~~q 80 (280)
T cd00806 1 RVLSGIQPSGSLHLGHYLGAFRFWVWLQEAGYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIFFQ 80 (280)
T ss_pred CEEEeeCCCchhhHHHHHHHHHHHHHHHhCCCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEEEc
Confidence 58999999999999999998899999999 999999999999999976 9999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia 237 (318)
|++++|.++.|+|+|.+++++|+|+.+|+++.+. .+++++|+|+||+||||||+++++|+||||.||+||+|++||+|
T Consensus 81 S~~~~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~--~~~~~~g~~~YP~lqaaDil~~~~~~vpvG~DQ~~h~~l~Rdia 158 (280)
T cd00806 81 SDVPEHYELAWLLSCVVTFGELERMTGFKDKSAQ--GESVNIGLLTYPVLQAADILLYKACLVPVGIDQDPHLELTRDIA 158 (280)
T ss_pred CCcHHHHHHHHHHhCcCCHHHHHhccchhhhhcc--CCCCcchhhcchHHHHhhhhhccCCEEeeccccHHHHHHHHHHH
Confidence 9999999999999999999999999999987663 36789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCCC
Q 021028 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSSA 317 (318)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~~ 317 (318)
+|+|++||. +|++|+.+++. +++||||++|++|||||++ +|+|+|+|+|++|++|||+|+||+..
T Consensus 159 ~r~n~~~~~------------~~~~P~~l~~~-~~~i~~l~g~~~KMSKS~~--~~~I~L~d~~~~i~~KI~~a~td~~~ 223 (280)
T cd00806 159 RRFNKLYGE------------IFPKPAALLSK-GAFLPGLQGPSKKMSKSDP--NNAIFLTDSPKEIKKKIMKAATDGGR 223 (280)
T ss_pred HHhcccccc------------ccCCCeeeccC-CCccccCCCCCCcccCCCC--CCeEEeeCCHHHHHHHHHhccCCCCC
Confidence 999998863 48899999986 4899999777689999997 59999999999999999999999864
No 10
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=6e-63 Score=476.87 Aligned_cols=222 Identities=38% Similarity=0.601 Sum_probs=205.2
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.++|+|++|||.+|||||++++++|++||+.++++|+||||||+++ ..+++++++++++++++|+|+||||+|++||+
T Consensus 2 ~~~v~sG~~PTG~~HLGn~l~~~~~~~~lQ~~~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i~~ 81 (333)
T PRK12282 2 KPIILTGDRPTGKLHLGHYVGSLKNRVALQNEHEQFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTIFI 81 (333)
T ss_pred CCEEEEeeCCCCcchHHHHHHHHHHHHHHHhCCCEEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEEEE
Confidence 46899999999999999999999999999997779999999999997 67999999999999999999999999999999
Q ss_pred cCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHH
Q 021028 157 QSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (318)
Q Consensus 157 qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rd 235 (318)
||+|++|.++.|.+++.+++++++|+.+||++....+ .+++++|+++||+||||||+++++|+||||.||+||+||+||
T Consensus 82 qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaDIl~~~~d~vpvG~DQ~~h~~laRd 161 (333)
T PRK12282 82 QSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAADITAFKATLVPVGDDQLPMIEQTRE 161 (333)
T ss_pred CCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHHHHhhCCCEEEeccccHHHHHHHHH
Confidence 9999999999999999999999999999997654433 357899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCC
Q 021028 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (318)
Q Consensus 236 ia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~ 315 (318)
+|+|||+.||.. +|..|++++.. +++|||| +|.+|||||++ ++|+|+|+||+|++||++|+||+
T Consensus 162 iA~~~n~~~~~~-----------~~~~p~~~~~~-~~~i~~L-~g~~KMSKS~~---~~I~L~D~pe~I~kKI~~A~td~ 225 (333)
T PRK12282 162 IVRRFNSLYGTD-----------VLVEPEALLPE-AGRLPGL-DGKAKMSKSLG---NAIYLSDDADTIKKKVMSMYTDP 225 (333)
T ss_pred HHHHHhhhcCCc-----------cccCchhcccC-CCcccCC-CCCCcCCCCCC---CeeeeeCCHHHHHHHHHhCcCCC
Confidence 999999988743 47889988865 4899999 77789999984 79999999999999999999986
No 11
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-59 Score=458.91 Aligned_cols=211 Identities=27% Similarity=0.378 Sum_probs=197.4
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+++++|||++|||.+|||||++ +.+|++||+ |++++|+|||+||+++ ..+++++++++++++++|+|+|+||+|++|
T Consensus 65 ~~~~iytG~~PSG~lHLGh~~~-~~~~~~lQ~~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i 143 (368)
T PRK12285 65 KPFAVYTGFMPSGPMHIGHKMV-FDELKWHQEFGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEI 143 (368)
T ss_pred CCeEEEEccCCCCCccHHHHHH-HHHHHHHHhcCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 4789999999999999999987 579999999 7999999999999998 578999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhc------ccccEEEecCcchH
Q 021028 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL------YQSDFVPVGEDQKQ 228 (318)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~------~~adivpvG~DQ~~ 228 (318)
|+||++.++.++.|.+++.+|+++|+|+.+|+ +++++|+++||+|||||||+ +++|+||||+||+|
T Consensus 144 ~~qS~~~~~~~l~~~l~~~~t~~~l~r~~~f~--------~~~~~g~~~YP~lQaADil~~~~~~~~~~~lvPvG~DQ~~ 215 (368)
T PRK12285 144 YFQSENIKVYDLAFELAKKVNFSELKAIYGFT--------GETNIGHIFYPATQAADILHPQLEEGPKPTLVPVGIDQDP 215 (368)
T ss_pred EECCchHHHHHHHHHHHhhCcHHHHHHhhCCC--------CCCchhhhhhhHHHHHHHHhhcccccCCceEEEeccchHH
Confidence 99999999999999999999999999998874 46799999999999999999 78899999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhh
Q 021028 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKI 308 (318)
Q Consensus 229 hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI 308 (318)
|+||+||||+|||+.|| |++|+++++ +++||| +| +|||||+| +|+|+|+|+|++|++||
T Consensus 216 h~~ltRdiA~r~n~~~g--------------f~~P~~l~~---~~lpgL-~G-~KMSkS~~--~s~I~L~D~p~~I~kKI 274 (368)
T PRK12285 216 HIRLTRDIAERLHGGYG--------------FIKPSSTYH---KFMPGL-TG-GKMSSSKP--ESAIYLTDDPETVKKKI 274 (368)
T ss_pred HHHHHHHHHHHHhhhcC--------------CCCchhHhh---hcccCC-CC-CcCCCCCC--CCeeeccCCHHHHHHHH
Confidence 99999999999999987 567999987 689999 66 79999998 59999999999999999
Q ss_pred ccccCCCCC
Q 021028 309 KRCKTDSSA 317 (318)
Q Consensus 309 ~~A~Td~~~ 317 (318)
++|+||+..
T Consensus 275 ~kA~Td~~~ 283 (368)
T PRK12285 275 MKALTGGRA 283 (368)
T ss_pred HhCcCCCCc
Confidence 999999753
No 12
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=7.2e-58 Score=441.03 Aligned_cols=211 Identities=27% Similarity=0.420 Sum_probs=190.2
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~-~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+++++|+||+|||.+||||+++ +.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 29 ~~~~v~~G~~PTG~lHLG~~~~-~~~~~~lq~~g~~~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~~A~G~dp~k~~i 107 (329)
T PRK08560 29 EEPKAYIGFEPSGKIHLGHLLT-MNKLADLQKAGFKVTVLLADWHAYLNDKGDLEEIRKVAEYNKKVFEALGLDPDKTEF 107 (329)
T ss_pred CCCEEEEccCCCCcchhhhhHH-HHHHHHHHHCCCeEEEEEccchhhcCCCCCHHHHHHHHHHHHHHHHHcCCChhheEE
Confidence 5889999999999999999875 679999999 99999999999999985 69999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHH----HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHH
Q 021028 155 FVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (318)
Q Consensus 155 ~~qS~~~~~~el~w~----L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi 230 (318)
|+||+|++|.+ +|. +++.+++++|+|+.+++.+ . . ++.++|+|+||+||||||+++++|+||||.||+||+
T Consensus 108 ~~qS~~~~~~~-~~~~~~~l~~~~~~~~l~r~~~~~~~--~-~-~~~~~g~l~YP~lqaaDil~~~ad~vpvG~DQ~~h~ 182 (329)
T PRK08560 108 VLGSEFQLDKE-YWLLVLKLAKNTTLARARRSMTIMGR--R-M-EEPDVSKLVYPLMQVADIFYLDVDIAVGGMDQRKIH 182 (329)
T ss_pred Eecchhhccch-HHHHHHHHHhhccHHHHHHhhhhhcc--c-C-CCCCHHHHHHHHHHHHHHHHhCCCEEEechhHHHHH
Confidence 99999988765 555 9999999999998887642 1 1 345999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhcc
Q 021028 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (318)
Q Consensus 231 ~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~ 310 (318)
+|+||||+|||+. .|.+++. ++||||+++++|||||+| +|+|+|+|+|++|++||++
T Consensus 183 ~l~Rdia~~~n~~------------------~p~~l~~---~~l~~L~g~~~KMSKS~p--~~~I~L~D~~~~I~~KI~k 239 (329)
T PRK08560 183 MLAREVLPKLGYK------------------KPVCIHT---PLLTGLDGGGIKMSKSKP--GSAIFVHDSPEEIRRKIKK 239 (329)
T ss_pred HHHHHhhHhcCCC------------------CceEEEc---CccCCCCCCCCCCcCCCC--CCeecccCCHHHHHHHHHh
Confidence 9999999999842 4777775 689999655569999997 5999999999999999999
Q ss_pred ccCCCC
Q 021028 311 CKTDSS 316 (318)
Q Consensus 311 A~Td~~ 316 (318)
|+||+.
T Consensus 240 A~t~~~ 245 (329)
T PRK08560 240 AYCPPG 245 (329)
T ss_pred ccCCCC
Confidence 999984
No 13
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.6e-57 Score=442.56 Aligned_cols=215 Identities=23% Similarity=0.335 Sum_probs=189.9
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+||||.+..+.+|++||+ |++++|+||||||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 65 ~~~~v~~G~~PTG~lHLG~g~i~~~~~~~lq~~G~~v~~~IaD~hA~~~~~~g~~l~~i~~~~~~~~~~~~A~GlDp~k~ 144 (383)
T PTZ00126 65 ERPICYDGFEPSGRMHIAQGILKAINVNKLTKAGCVFVFWVADWFALLNNKMGGDLEKIRKVGEYFIEVWKAAGMDMDNV 144 (383)
T ss_pred CCCEEEEEECCCCcccccchHhHhHHHHHHHhCCCeEEEEEccceeecCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 67899999999999999994332348999999 89999999999999984 589999999999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhc----cCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcch
Q 021028 153 SVFVQSH-VRAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (318)
Q Consensus 153 ~i~~qS~-~~~~~el~w~L~~----~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~ 227 (318)
+||+||+ +.+|.+++|.+.+ .+++++++|+.+++.+.. .+++++|+|+||+||||||+++++|+||||.||+
T Consensus 145 ~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~---~~~~~~g~l~YP~LQaaDil~l~adivpvG~DQ~ 221 (383)
T PTZ00126 145 RFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSE---GDEQPCAQILYPCMQCADIFYLKADICQLGMDQR 221 (383)
T ss_pred EEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhcccc---CCCCCchhhhhhHHHhhhhhccCCCEEEeCccHH
Confidence 9999998 5688999998665 469999999998865432 2567899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 228 ~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+|++|+||+|+++|+++ .|..++. ++||||+||++|||||+| +++|+|+|+|++|++|
T Consensus 222 ~~~~LaRdia~~~~~~~-----------------~~~~~~~---~~lpgL~dg~~KMSKS~~--ns~I~L~Dspe~I~kK 279 (383)
T PTZ00126 222 KVNMLAREYCDKKKIKK-----------------KPIILSH---HMLPGLLEGQEKMSKSDP--NSAIFMEDSEEDVNRK 279 (383)
T ss_pred HHHHHHHHHHHHhCCCC-----------------Cceeecc---cccccCCCCCCCCCcCCC--CCeecCCCCHHHHHHH
Confidence 99999999999999542 2544433 799999888899999998 4899999999999999
Q ss_pred hccccCCCC
Q 021028 308 IKRCKTDSS 316 (318)
Q Consensus 308 I~~A~Td~~ 316 (318)
||+|+||++
T Consensus 280 I~kA~t~p~ 288 (383)
T PTZ00126 280 IKKAYCPPG 288 (383)
T ss_pred HHhCcCCCC
Confidence 999999974
No 14
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=3.1e-54 Score=408.03 Aligned_cols=220 Identities=38% Similarity=0.599 Sum_probs=198.0
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHH--HHHcCCCCC
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAI--YLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~---d~~~i~~~~~~~~~~--llA~GiDpe 150 (318)
+++++|+||+|||.+||||+++ +.+|++||+ |++++|+|||+||+++.. +++.++.+++++++. ++|+|+||+
T Consensus 4 ~~~~~y~G~~PTg~lHlG~l~~-~~~~~~lq~~g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~d~~ 82 (292)
T PF00579_consen 4 KPFRVYTGIDPTGDLHLGHLVP-IMKLIWLQKAGFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGLDPE 82 (292)
T ss_dssp SSEEEEEEEESSSS-BHHHHHH-HHHHHHHHHTTSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTSHTT
T ss_pred CCcEEEEeECCCCcccchHHHH-HHHHHHHHhcCCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 5889999999999999997766 579999996 899999999999999844 589999999999999 999999999
Q ss_pred ceEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcccccEEEecCcchHH
Q 021028 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (318)
Q Consensus 151 k~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~h 229 (318)
+++||+||+|.++.++.|++.+..+..+|+|+.+++++..+.+ ++++++|+|+||+||||||+++++|+||||.||++|
T Consensus 83 k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD~~~l~~~~~~~G~DQ~~~ 162 (292)
T PF00579_consen 83 KTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAADILLLKADLVPGGIDQRGH 162 (292)
T ss_dssp TEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHHHHHTTHSEEEEEGGGHHH
T ss_pred ceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccceeeeccccccccchHHHH
Confidence 9999999999999999999999999999999999998666655 258999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhc
Q 021028 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (318)
Q Consensus 230 i~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 309 (318)
++++||+|+|+|.+. .++.|..+++ +++|+| +|.+|||||+|+ ++|+|+|++++|++||+
T Consensus 163 ~~l~rd~a~k~~~~~--------------~~~~p~~l~~---~~l~~l-~G~~KMSKS~~n--s~I~L~d~~~~i~~Ki~ 222 (292)
T PF00579_consen 163 IELARDLARKFNYKE--------------IFPKPAGLTS---PLLPGL-DGQKKMSKSDPN--SAIFLDDSPEEIRKKIK 222 (292)
T ss_dssp HHHHHHHHHHHTHHS--------------TSSS-EEEEE---TCBBST-TSSSBTTTTTTG--GS-BTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhhcccc--------------cccCchheee---cccccc-CCccccCccCCc--cEEEEeccchhHHHHHH
Confidence 999999999999761 3678999988 579999 786799999974 79999999999999999
Q ss_pred cccCCCCC
Q 021028 310 RCKTDSSA 317 (318)
Q Consensus 310 ~A~Td~~~ 317 (318)
+|+|++..
T Consensus 223 ~a~~~~~~ 230 (292)
T PF00579_consen 223 KAFCDPDR 230 (292)
T ss_dssp HSHTSTTS
T ss_pred HHhhCCCc
Confidence 99999874
No 15
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.4e-52 Score=394.96 Aligned_cols=206 Identities=29% Similarity=0.423 Sum_probs=185.5
Q ss_pred eEEEeeCCCC-ccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC----------CHHHHHHHHHHHHHHHHHcCC
Q 021028 80 RIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY----------DTQQLSKATRETAAIYLACGI 147 (318)
Q Consensus 80 ~i~tGi~PTG-~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~----------d~~~i~~~~~~~~~~llA~Gi 147 (318)
.+|+||+||| .+|||||++ +.+|++||+ |++++++|||+||+++.. +++++++++++++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~-l~~~~~lq~~g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIG-LLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHH-HHHHHHHHHCCCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4899999999 699999999 679999999 899999999999999843 789999999999999999999
Q ss_pred C--CCceEEEEcCCch---hhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccc----c
Q 021028 148 D--NSKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS----D 218 (318)
Q Consensus 148 D--pek~~i~~qS~~~---~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~a----d 218 (318)
| |+|++||.||+|+ ++.++.|.+++.+++++|.|+.+||++. . +++++|+|+||+||||||+++++ |
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~---~-~~~~~~~~~Yp~lQaaD~l~l~~~~~~~ 155 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRS---E-EGISATEFTYPPLQAADFLLLNTTEGCD 155 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHh---c-CCCCchhhhhHHHHHHHHHHHhcccCCc
Confidence 9 9999999999998 7999999999999999999999999764 2 56899999999999999999987 9
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc
Q 021028 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~ 298 (318)
+||||.||++|++++||+|+|+|. ++.|..++. ++||+| +| .|||||.++.-..|+++
T Consensus 156 ~vp~G~DQ~~~i~l~rdla~r~n~-----------------~~~p~~l~~---p~l~~l-~G-~KMSKS~~~~i~l~~~~ 213 (273)
T cd00395 156 IQPGGSDQWGNITLGRELARRFNG-----------------FTIAEGLTI---PLVTKL-DG-PKFGKSESGPKWLDTEK 213 (273)
T ss_pred EEEecHHHHHHHHHHHHHHHHhCC-----------------CCCCeEEee---ccccCC-CC-CcCCCCCCCCccccccC
Confidence 999999999999999999999982 346888887 689999 77 59999986311224479
Q ss_pred CCHHHHHHhhcccc
Q 021028 299 DPKDVIANKIKRCK 312 (318)
Q Consensus 299 D~pe~I~~KI~~A~ 312 (318)
|+|++|++||++|+
T Consensus 214 dsp~~i~~ki~~a~ 227 (273)
T cd00395 214 TSPYEFYQFWINAV 227 (273)
T ss_pred CCHHHHHHHHHccc
Confidence 99999999999986
No 16
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6.8e-53 Score=396.17 Aligned_cols=206 Identities=24% Similarity=0.276 Sum_probs=184.4
Q ss_pred ceEEEeeCCCC-ccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHHcC
Q 021028 79 KRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLACG 146 (318)
Q Consensus 79 ~~i~tGi~PTG-~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~---------~d~~~i~~~~~~~~~~llA~G 146 (318)
.++|+||+||| .+|||||+++ .+|++||+ |++++|+|||+||+++ + .+++++++++++++++|+|+|
T Consensus 1 ~~iy~G~~PTg~~lHLG~~~~~-~~~~~lq~~g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g 79 (269)
T cd00805 1 LKVYIGFDPTAPSLHLGHLVPL-MKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAIL 79 (269)
T ss_pred CeEEEeeCCCCCcccHHHHHHH-HHHHHHHHCCCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999 7999999986 59999999 8999999999999997 5 589999999999999999999
Q ss_pred CC--CCceEEEEcCCchhhhHHHHH----HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEE
Q 021028 147 ID--NSKASVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (318)
Q Consensus 147 iD--pek~~i~~qS~~~~~~el~w~----L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adiv 220 (318)
+| |+|++||+||+|+++ ++|+ +++.+++++|.|+.+|+++... .+++++|+|+||+||||||+++++|+|
T Consensus 80 ~~~~p~k~~i~~~s~~~~~--l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~--~~~~~~~~~~YP~lQaaDi~~l~~~l~ 155 (269)
T cd00805 80 DFIPPEKAKFVNNSDWLLS--LYTLDFLRLGKHFTVNRMLRRDAVKVRLEE--EEGISFSEFIYPLLQAYDFVYLDVDLQ 155 (269)
T ss_pred ccCCCcceEEEEchHhhcc--CCHHHHHHHHhhCcHHHHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHhhHHHHhCCee
Confidence 96 999999999999887 6777 8999999999999999876532 257899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe-EeccC
Q 021028 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR-INLLD 299 (318)
Q Consensus 221 pvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~-I~L~D 299 (318)
|||.||++|++++||+|+|+|.. .|..+.. ++||++ +| +|||||.++ +. |++.|
T Consensus 156 ~~G~DQ~~~i~~~rd~a~r~~~~------------------~~~~l~~---~ll~~l-~G-~KMSKS~~~--~~~i~l~d 210 (269)
T cd00805 156 LGGSDQRGNITLGRDLIRKLGYK------------------KVVGLTT---PLLTGL-DG-GKMSKSEGN--AIWDPVLD 210 (269)
T ss_pred EecHHHHHHHHHHHHHHHHhCCC------------------CcEEEee---ccccCC-CC-CcccCCCCC--cccccCCC
Confidence 99999999999999999999732 2444444 679999 77 699999964 34 69999
Q ss_pred CHHHHHHhhccccCC
Q 021028 300 PKDVIANKIKRCKTD 314 (318)
Q Consensus 300 ~pe~I~~KI~~A~Td 314 (318)
+|++|++||++|+||
T Consensus 211 sp~~i~~Ki~~a~~~ 225 (269)
T cd00805 211 SPYDVYQKIRNAFDP 225 (269)
T ss_pred CHHHHHHHHHcCCcH
Confidence 999999999999997
No 17
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=2e-52 Score=432.39 Aligned_cols=216 Identities=24% Similarity=0.372 Sum_probs=186.5
Q ss_pred CCceEEEeeCCCCccchhh-HHHHHHHHHHHhccCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGN-YLGAIKNWIALQNSYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGh-yvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+|||| ++++++.|..+|.|++++|+||||||+|++ .++++++.++++++++|+|+|+||+|+
T Consensus 31 ~~~rv~sGi~PTG~lHLGng~~~aik~~~~~q~g~~~~~lIAD~HAlt~~~~~~~l~~i~~~~~~~~~~~lA~GlDpeK~ 110 (682)
T PTZ00348 31 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTQAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 110 (682)
T ss_pred CCCEEEEeeCCCCcCeeccHHHHHHHHHHHHhCCCeEEEEEcchhhhcCCCCCCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 4689999999999999999 456666666668899999999999999973 378899988999999999999999999
Q ss_pred EEEEcCC-chhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC--CCCcccccchhhHHHhhhhhcccccEEEecCcchHH
Q 021028 153 SVFVQSH-VRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG--GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQH 229 (318)
Q Consensus 153 ~i~~qS~-~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~--~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~h 229 (318)
+||+||+ +.+|.+++|.+ .+.++++.++.++++..+..+ .+++++|+++||+|||||||++++|+||||.||+||
T Consensus 111 ~~~~qSd~i~e~~el~w~l--v~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YPvLQAADIl~l~adivpvG~DQ~qh 188 (682)
T PTZ00348 111 LFLWSSEEITNHANTYWRT--VLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYPLMQCADIFFLKADICQLGLDQRKV 188 (682)
T ss_pred EEEECcHhhhhhhHHHHHH--HHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhhHHHhhcccccCCCEEEeCccHHHH
Confidence 9999998 77899999987 466888888888876543222 235899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhc
Q 021028 230 LELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIK 309 (318)
Q Consensus 230 i~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~ 309 (318)
++|+|++|+++|+.+ .|..+.. ++||||++|++|||||+| +|+|+|+|+|++|++||+
T Consensus 189 ~eLaRdia~~~g~~~-----------------kpvil~~---~~LpGL~gg~~KMSKS~p--~naI~L~Dspe~I~kKI~ 246 (682)
T PTZ00348 189 NMLAREYCDLIGRKL-----------------KPVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARKIR 246 (682)
T ss_pred HHHHHHHHHHhCCCC-----------------Cceeccc---ccCcCCCCCCCcCCCCCC--CCeecccCCHHHHHHHHH
Confidence 999999999998432 2433333 789999777789999997 599999999999999999
Q ss_pred cccCCCC
Q 021028 310 RCKTDSS 316 (318)
Q Consensus 310 ~A~Td~~ 316 (318)
+|+||+.
T Consensus 247 kA~td~~ 253 (682)
T PTZ00348 247 QAYCPRV 253 (682)
T ss_pred hCCCCCC
Confidence 9999974
No 18
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.3e-48 Score=378.97 Aligned_cols=209 Identities=21% Similarity=0.309 Sum_probs=176.7
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~--g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+|++|||. |||||+++++ ..++||+ ++.++|+|+|+|+++. ..+++++++++++++++|+|+|+||+|+
T Consensus 72 ~~~~vYtG~~PSg~~lHlGHlv~~~-~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt 150 (383)
T PLN02486 72 EKFYLYTGRGPSSEALHLGHLIPFM-FTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERT 150 (383)
T ss_pred CCeEEEeCCCCCCccccHHHHHHHH-HHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcce
Confidence 47899999999995 9999999976 5556997 5788999999999998 5589999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhh------cccc-----cEE
Q 021028 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL------LYQS-----DFV 220 (318)
Q Consensus 153 ~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil------~~~a-----div 220 (318)
.||.|++|. .+++|.... +|.|+.+++++.+.+| .++.++|+++||+||||||| .++. |+|
T Consensus 151 ~I~s~~~~~--~~~~~~~~~-----~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lV 223 (383)
T PLN02486 151 FIFSDFDYV--GGAFYKNMV-----KIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLI 223 (383)
T ss_pred EEEeccHHH--hHhHHHHHH-----HHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCccee
Confidence 999777664 344554322 4667777777777665 35679999999999999998 3444 999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCC
Q 021028 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (318)
Q Consensus 221 pvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~ 300 (318)
|||.||+||++|+||+|+|+|. ..|..+++ +++|+|+++.+|||||.| +++|+|+|+
T Consensus 224 PvG~DQd~~~~ltRdia~r~~~------------------~kp~~~~~---~~lp~L~g~~~KMSkS~~--nsaI~L~D~ 280 (383)
T PLN02486 224 PCAIDQDPYFRMTRDVAPRLGY------------------YKPALIES---RFFPALQGESGKMSASDP--NSAIYVTDT 280 (383)
T ss_pred ecccchHHHHHHHHHHHHHhCC------------------CCcceecc---ccccCCCCCCCcCcCcCC--CCeeeccCC
Confidence 9999999999999999999984 24866665 789999766689999997 589999999
Q ss_pred HHHHHHhhcc-ccCCCC
Q 021028 301 KDVIANKIKR-CKTDSS 316 (318)
Q Consensus 301 pe~I~~KI~~-A~Td~~ 316 (318)
|++|++||++ |+||+.
T Consensus 281 p~~i~~KI~k~A~t~~~ 297 (383)
T PLN02486 281 PKEIKNKINKYAFSGGQ 297 (383)
T ss_pred HHHHHHHHhcCCCCCCC
Confidence 9999999999 999875
No 19
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.1e-46 Score=367.79 Aligned_cols=208 Identities=21% Similarity=0.251 Sum_probs=178.9
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+.++..+ ++
T Consensus 32 ~~~~vy~G~dPTg~slHlGhlv~-l~~l~~lQ~~G~~~~~ligd~ta~igDpsgk~~~r~~l~~e~i~~n~~~i~~q-l~ 109 (408)
T PRK05912 32 EPLRIYLGFDPTAPSLHLGHLVP-LLKLRRFQDAGHKPIALIGGFTGMIGDPSGKSETRKLLTREQVAENAETIKEQ-LF 109 (408)
T ss_pred CCCEEEEeecCCCCCccHHhHHH-HHHHHHHHHCCCcEEEEEcCceeEcCCCCCCchhhccCCHHHHHHHHHHHHHH-HH
Confidence 57899999999995 99999997 579999998 8999999999999997 42 457888888776554 58
Q ss_pred cCCCCCc--eEEEEcCCchhhhHHHHHHh---ccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc----
Q 021028 145 CGIDNSK--ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (318)
Q Consensus 145 ~GiDpek--~~i~~qS~~~~~~el~w~L~---~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~---- 215 (318)
+|+||++ ++||+||+|.++.++.|++. +.++++++.+..+|+.+... .+++++|+|+||+|||||++++
T Consensus 110 ~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~--~~~is~~ef~Yp~LQa~D~l~l~~~~ 187 (408)
T PRK05912 110 KFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLRE--GQGISFTEFLYPLLQGYDFVALNKRY 187 (408)
T ss_pred HhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhcc--CCCCchhhhhhHHHHHhhHHHHhccC
Confidence 9999999 99999999999989999866 79999999988888765421 2579999999999999999999
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
++|+||||.||++|++++||+|+|+|.+ .+..+.. +.|+++ || +|||||. +|+|
T Consensus 188 ~~~i~~gG~DQ~~ni~~grdla~r~~~~------------------~~~~l~~---plL~~~-~G-~KMsKS~---~naI 241 (408)
T PRK05912 188 GCDLQLGGSDQWGNILSGRDLQRRYGGK------------------PQFGLTM---PLLTGL-DG-KKMGKSE---GNAV 241 (408)
T ss_pred CCCEEeccHHHHHHHHHHHHHHHHhCCC------------------CeEEEec---CCcCCC-CC-CcccCCC---CCce
Confidence 9999999999999999999999999842 1222333 678898 77 8999997 6999
Q ss_pred eccC---CHHHHHHhhccccCCC
Q 021028 296 NLLD---PKDVIANKIKRCKTDS 315 (318)
Q Consensus 296 ~L~D---~pe~I~~KI~~A~Td~ 315 (318)
+|+| +|+++++||+++ +|+
T Consensus 242 ~L~d~~tsp~~i~qki~~~-~D~ 263 (408)
T PRK05912 242 WLDEEKTSPYEMYQKWMNI-SDA 263 (408)
T ss_pred eCCCCCCCHHHHHHHHhcC-ChH
Confidence 9999 999999999996 443
No 20
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=4.1e-44 Score=354.26 Aligned_cols=204 Identities=17% Similarity=0.189 Sum_probs=171.6
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~---------~d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +||||+++ +.+|++||+ |++++++|||+||+++ | .+.+++++|++++.+++.+
T Consensus 32 ~~~~iy~G~dPT~~sLHlGhlv~-l~~l~~lq~~G~~~~~ligd~ta~igDpsgk~~~R~~l~~e~i~~n~~~i~~q~~~ 110 (410)
T PRK13354 32 KPLTLYLGFDPTAPSLHIGHLVP-LMKLKRFQDAGHRPVILIGGFTGKIGDPSGKSKERKLLTDEQVQHNAKTYTEQIFK 110 (410)
T ss_pred CCcEEEEcccCCCCCcchhhHHH-HHHHHHHHHcCCeEEEEEcccccccCCCCcccccccCCCHHHHHHHHHHHHHHHHH
Confidence 58899999999995 99999887 568999998 8999999999999997 3 2557899999988888776
Q ss_pred cCCCCCceEEEEcCCchhhhHHHHHH---hccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcc----c
Q 021028 145 CGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY----Q 216 (318)
Q Consensus 145 ~GiDpek~~i~~qS~~~~~~el~w~L---~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~----~ 216 (318)
|+|+++++|++||+|.++.++.|++ +..++++++.+.-.| ..+.+ ..++++++|+||+|||+|++++ +
T Consensus 111 -~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~---~~R~~~~~~is~~ef~YpllQa~D~~~l~~~~~ 186 (410)
T PRK13354 111 -LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDV---KSRLEREQGISFTEFFYPLLQAYDFVHLNRKED 186 (410)
T ss_pred -hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHH---HhhhccCCCCchhhhccHHHHhhhHHHHhccCC
Confidence 8999999999999998877777765 457777765444334 33342 3578999999999999999999 9
Q ss_pred ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEe
Q 021028 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~ 296 (318)
+|++|||.||++|++++||+|+|+|.++ |..+.. +.|+++ ||+ |||||. +|+|+
T Consensus 187 ~~iq~gG~DQ~~ni~~grdl~~r~~~~~------------------~~~lt~---PlL~g~-dG~-KMsKS~---~naI~ 240 (410)
T PRK13354 187 VDLQIGGTDQWGNILMGRDLQRKLEGEE------------------QFGLTM---PLLEGA-DGT-KMGKSA---GGAIW 240 (410)
T ss_pred CCEEEecHHHHHHHHHHHHHHHHhCCCC------------------ceEecc---CCccCC-CCC-ccCCCC---CCcee
Confidence 9999999999999999999999998542 333433 678898 885 999997 58999
Q ss_pred ccCC---HHHHHHhhccc
Q 021028 297 LLDP---KDVIANKIKRC 311 (318)
Q Consensus 297 L~D~---pe~I~~KI~~A 311 (318)
|+|+ |+++++||+++
T Consensus 241 L~d~~tsp~~i~qki~~~ 258 (410)
T PRK13354 241 LDPEKTSPYEFYQFWMNI 258 (410)
T ss_pred ccCCCCCHHHHHHHHHcC
Confidence 9999 99999999986
No 21
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=5.8e-44 Score=349.99 Aligned_cols=210 Identities=22% Similarity=0.268 Sum_probs=176.3
Q ss_pred CceEEEeeCCCC-ccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHHc
Q 021028 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLAC 145 (318)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~~~~llA~ 145 (318)
++++|+||+||| .+||||+++ +.+|++||+ |++++++|||+||+++ |. +.+++++|+ +.++.++++
T Consensus 30 ~~~vy~G~dPTg~~lHlGh~v~-l~~l~~lq~~G~~~~iligd~ta~igdpsg~~~~R~~~~~~~i~~n~-~~i~~~la~ 107 (377)
T TIGR00234 30 KIKLYVGFDPTAPSLHLGHLVP-LLKLRDFQQAGHEVIVLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIAR 107 (377)
T ss_pred CCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEeccchhhcCCCChHHHhhcCCHHHHHHHH-HHHHHHHHH
Confidence 789999999999 799999998 468999998 8999999999999998 43 345666666 567788999
Q ss_pred CCCCCceEEEEcCCchh---hhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEe
Q 021028 146 GIDNSKASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (318)
Q Consensus 146 GiDpek~~i~~qS~~~~---~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpv 222 (318)
|+||++++|++||+|.. +.++.|.+++.++++++.+..+|+.+.. +++++++|+||+|||+|++++++|+|+|
T Consensus 108 gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~----~~is~~ef~YpllQa~D~~~l~~di~~g 183 (377)
T TIGR00234 108 FLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLE----RGISLSEFIYPLLQAYDFVYLNVDLQIG 183 (377)
T ss_pred hCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHh----cCCCchhhhhHHHHHHHHHHHcCCeeEe
Confidence 99999999999999864 5566677889999999999999875432 4689999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCC------CC--CCe
Q 021028 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP------SD--QSR 294 (318)
Q Consensus 223 G~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p------~~--~s~ 294 (318)
|.||++|++.+|++|++++.+. .|.+|.++++ ++ || .|||||.. .+ .++
T Consensus 184 G~DQ~~ni~~g~dLar~~~~~~--------------~~~~t~pLl~-------~~-dg-~KmgKS~~~~i~l~~~~~~~~ 240 (377)
T TIGR00234 184 GSDQWGNIRKGRDLIRRNLPSL--------------GFGLTVPLLT-------PA-DG-EKMGKSGGGAVSLDEGKYDFY 240 (377)
T ss_pred cchhHHHHHHHHHHHHHhcCCC--------------ceeeceeeec-------CC-CC-CCccCCCCCcccCCccHhhhh
Confidence 9999999999999999998542 2556666655 33 55 68888752 11 278
Q ss_pred EeccCCHHHHHHhhccccCCCC
Q 021028 295 INLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 295 I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
||+.|+||++.+||++++|+..
T Consensus 241 i~~~d~~D~~~~Ki~k~~t~~~ 262 (377)
T TIGR00234 241 QFWINTPDEDVKKILKLFTFLG 262 (377)
T ss_pred hhhcCCcHHHHHHHHHHcCCCc
Confidence 8888889999999999999875
No 22
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.2e-38 Score=297.00 Aligned_cols=211 Identities=24% Similarity=0.222 Sum_probs=166.5
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHH-HHHHHHHc---CCCC
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRE-TAAIYLAC---GIDN 149 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~--d~~~i~~~~~~-~~~~llA~---GiDp 149 (318)
+.+.||||++|||++|+|.++++ .+..+|-+ ||+|.|++|||||++++- .++.+..++.| ....+.++ +++.
T Consensus 33 r~l~~YwGtaptGrpHiay~vpm-~kiadflkAGC~VtIl~AD~hA~LdNmkap~e~~~~rv~yYe~~Ik~~l~~~nv~l 111 (360)
T KOG2144|consen 33 RALKCYWGTAPTGRPHIAYFVPM-MKIADFLKAGCEVTILFADLHAFLDNMKAPDELVIRRVGYYEKEIKAALGSINVPL 111 (360)
T ss_pred cCceeeecCCCCCCcceeeeeeh-hHHHHHHhcCCeEEEEehHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhhcCCcH
Confidence 57899999999999999998885 48888865 999999999999999843 44555555543 33344444 5566
Q ss_pred CceEEEEcCCch---hhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcc
Q 021028 150 SKASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQ 226 (318)
Q Consensus 150 ek~~i~~qS~~~---~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ 226 (318)
|+..|...|++. .++-..++++..++-..+ |+.+..-++. .+...++.++||+|||+|++++++|++++|.||
T Consensus 112 EkL~fv~gs~yq~sk~ytld~~rl~~~~~~hda-k~agaevvkq---ve~plls~llYP~MQalDe~~L~vD~qfgGvDQ 187 (360)
T KOG2144|consen 112 EKLKFVKGSNYQLSKYYTLDMYRLSSNVTQHDA-KKAGAEVVKQ---VENPLLSGLLYPGMQALDEFYLEVDAQFGGVDQ 187 (360)
T ss_pred HHHhhhcccccccCccchhhHHHHHhhccHhHH-HHhhhhHHHh---hcchhhhhhhhhhHHHhhHHHHhhhHHhcCccH
Confidence 777778888763 244455556655554434 3434432222 267889999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHH
Q 021028 227 KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIAN 306 (318)
Q Consensus 227 ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~ 306 (318)
|..+.++|++++.++++ +|..+++ +|+|||++| +|||||+| .|.|+|.|+|++|.+
T Consensus 188 RKIf~~A~eylp~l~yk------------------KrihLmn---pMvPGL~q~-~KMSsSd~--~SkIdllD~~~~V~k 243 (360)
T KOG2144|consen 188 RKIFVLAEEYLPDLGYK------------------KRIHLMN---PMVPGLAQG-EKMSSSDP--LSKIDLLDEPADVNK 243 (360)
T ss_pred HHHHHHHHHhhhhhCcc------------------cceeecC---CCCcccccc-CccccCCc--ccccccccCHHHHHH
Confidence 99999999999999854 4766776 799999665 89999998 499999999999999
Q ss_pred hhccccCCCC
Q 021028 307 KIKRCKTDSS 316 (318)
Q Consensus 307 KI~~A~Td~~ 316 (318)
||++|||.|+
T Consensus 244 KI~kAfCePg 253 (360)
T KOG2144|consen 244 KIKKAFCEPG 253 (360)
T ss_pred HHHHhcCCCC
Confidence 9999999984
No 23
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-36 Score=295.02 Aligned_cols=212 Identities=22% Similarity=0.235 Sum_probs=167.3
Q ss_pred CceEEEeeCCCC-ccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C-CCHHHHHHHHH----HHHH-HHHHcCCC
Q 021028 78 KKRIVSGVQPTG-SIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P-YDTQQLSKATR----ETAA-IYLACGID 148 (318)
Q Consensus 78 ~~~i~tGi~PTG-~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~-~d~~~i~~~~~----~~~~-~llA~GiD 148 (318)
++++|+||+||| .+||||++++ .++++||+ ||+++++|||+||+++ | .+.++++..++ ++++ ...++|.+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l-~kL~~fQ~aGh~~ivLigd~ta~IgDpsGk~e~r~~l~~e~v~~n~~~i~~ql~~~ 110 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPL-MKLRRFQDAGHKPIVLIGDATAMIGDPSGKSEERKLLTRETVLENAETIKKQLGKF 110 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHH-HHHHHHHHCCCeEEEEecccceecCCCCCCHHHHhhccHHHHHHHHHHHHHHhccc
Confidence 889999999999 6999999985 59999998 8999999999999998 5 45555555543 2222 33456766
Q ss_pred CC-ceEEEEcCCchhhh---HHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecC
Q 021028 149 NS-KASVFVQSHVRAHV---ELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGE 224 (318)
Q Consensus 149 pe-k~~i~~qS~~~~~~---el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~ 224 (318)
++ +++|+++|+|.... +.-..++.++|++++.+...|+.+.. .+.++++.+|+||+|||+|+++++.|+++||.
T Consensus 111 ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~--~~~~is~~Ef~YpLmQayD~~~L~~dlq~GG~ 188 (401)
T COG0162 111 LDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLE--REQGISFTEFNYPLLQAYDFVYLNKDLQLGGS 188 (401)
T ss_pred CCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhc--cCCCCchhhhhhHHHHHHHHHHHccchhcCCh
Confidence 66 99999999996532 22223668999999888888874332 23579999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCC-------CCCeEec
Q 021028 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS-------DQSRINL 297 (318)
Q Consensus 225 DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~-------~~s~I~L 297 (318)
|||.++.++||+++|++. +.+.++.. +.|+++ ||. |||||..+ +.|.|.+
T Consensus 189 DQ~~ni~~grdl~rr~g~------------------~~~~~lt~---PLL~~l-dG~-KmgKs~~~a~~~~s~~~Sp~~~ 245 (401)
T COG0162 189 DQWGNILAGRDLIRRLGQ------------------KKVVGLTT---PLLTGL-DGK-KMGKSEGGAVWLDSEKTSPYDF 245 (401)
T ss_pred HHHHHHHHHHHHHHHhCC------------------CCeEEEEe---ccccCC-CCC-cccccCCCceEccCCCCCcHhh
Confidence 999999999999999873 23556666 569999 885 88888642 2346777
Q ss_pred cCCHHHHHHhhccccCCC
Q 021028 298 LDPKDVIANKIKRCKTDS 315 (318)
Q Consensus 298 ~D~pe~I~~KI~~A~Td~ 315 (318)
.|.+.+|..|++.++|..
T Consensus 246 yq~~~~i~D~~~~~~~~~ 263 (401)
T COG0162 246 YQYWMNIEDADVKRFLKL 263 (401)
T ss_pred hhcHhcCcHHHHHHHHHH
Confidence 777888888888887754
No 24
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-33 Score=262.55 Aligned_cols=207 Identities=23% Similarity=0.330 Sum_probs=176.1
Q ss_pred CCceEEEeeCCCC-ccchhhHHHHH-HHHHHHhccC--cEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 021028 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQNSY--ETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGhyvg~l-~~~~~LQ~g~--~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek 151 (318)
+|+++|||..||. .|||||.+++| .+| ||+.+ ..+|.+.|.++++. ....++..+.+++++++++|+|+||.|
T Consensus 84 kpFyLYTGRGpSS~smHlGHliPFiftKw--lQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~k 161 (397)
T KOG2145|consen 84 KPFYLYTGRGPSSESMHLGHLIPFIFTKW--LQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKK 161 (397)
T ss_pred CceEEEeCCCCCccccccccchhHHHHHH--HHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcc
Confidence 5899999999995 59999999998 678 88955 56999999999998 447789999999999999999999999
Q ss_pred eEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcc-----------cccE
Q 021028 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLY-----------QSDF 219 (318)
Q Consensus 152 ~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~-----------~adi 219 (318)
+.||.+.++..-. ..+-++-++.+++++++....+| ..+..+|.+-+|..|+|..+.. -+|+
T Consensus 162 TfIFsn~~y~g~~------~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CL 235 (397)
T KOG2145|consen 162 TFIFSNLDYMGGP------AFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCL 235 (397)
T ss_pred eEEEechhhccCc------HHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCcee
Confidence 9999999875210 11234456678888887777777 5667999999999999999884 2699
Q ss_pred EEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccC
Q 021028 220 VPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (318)
Q Consensus 220 vpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D 299 (318)
+|+.+||+++++++||+|+|++ +++|..+++ .++|.|++.+.|||.|+| +++|||+|
T Consensus 236 iPcAiDQDPyFRmtRDvA~rlg------------------~~Kpali~s---tffpaLqG~~~KMSASdp--ns~Ifltd 292 (397)
T KOG2145|consen 236 IPCAIDQDPYFRMTRDVAPRLG------------------YPKPALIHS---TFFPALQGAQTKMSASDP--NSAIFLTD 292 (397)
T ss_pred ceeeccCChHHHhhhhhhhhhC------------------CCCcceeeh---hhchhhhCcccccccCCC--CceEEecC
Confidence 9999999999999999999987 456987877 679999888899999998 59999999
Q ss_pred CHHHHHHhhcc-ccCC
Q 021028 300 PKDVIANKIKR-CKTD 314 (318)
Q Consensus 300 ~pe~I~~KI~~-A~Td 314 (318)
++++|++||.+ |+.+
T Consensus 293 t~~qIk~KI~~~afSG 308 (397)
T KOG2145|consen 293 TAKQIKNKINKYAFSG 308 (397)
T ss_pred cHHHHHHHHHHhhccC
Confidence 99999999987 5544
No 25
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.97 E-value=9.3e-32 Score=278.91 Aligned_cols=172 Identities=15% Similarity=0.162 Sum_probs=151.2
Q ss_pred cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh-hHHHHH----HhccCCHHHHh
Q 021028 109 SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLN 180 (318)
Q Consensus 109 g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~-~el~w~----L~~~~tv~~L~ 180 (318)
|++++|++|||||++++ +|+++|++.++|+++.|+|+|+|++ ++|+|+||+... ...||. ++..+|++|++
T Consensus 407 g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~tl~r~~ 485 (682)
T PTZ00348 407 DGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKNLLSHVE 485 (682)
T ss_pred CCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhccHHHHH
Confidence 89999999999999984 6999999999999999999999999 999999997544 557997 55789999998
Q ss_pred chhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccc
Q 021028 181 KMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIF 260 (318)
Q Consensus 181 r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~ 260 (318)
|+. |++..+++.++||+||++||+++++|++.+|+|||..++||||++++.++
T Consensus 486 r~~---------g~~~~~~s~~iYP~MQ~~Di~~L~~di~~gG~DQRki~mlAre~~~~~~~------------------ 538 (682)
T PTZ00348 486 ELY---------GGELRNAGQVIAALMRVATALMLSASHVISTSLDGGINEFAREYTKGRIE------------------ 538 (682)
T ss_pred HHh---------cCCcccHHHHHHHHHHHHHHHhcCCCeeecChhHHHHHHHHHHhcccccc------------------
Confidence 875 12556999999999999999999999999999999999999999996321
Q ss_pred cCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCC
Q 021028 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (318)
Q Consensus 261 ~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~ 315 (318)
|..++. .++|+|..|..+|++|+| +++|+|.|++++|++||++|+|.+
T Consensus 539 --~~~~~~---~~~p~l~~~~~~~~~~s~--~s~i~~~D~~~~i~~Ki~kA~Cpp 586 (682)
T PTZ00348 539 --CIQALE---GRVPALHRPGAAPAVLGA--DDVLYLDDNDMDIRRKIKKAYSAP 586 (682)
T ss_pred --chhhcC---CCCccccccccccCCCCC--CCeeeecCCHHHHHHHHHhCCCCC
Confidence 333443 678999878889999976 699999999999999999999987
No 26
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=3.5e-20 Score=179.32 Aligned_cols=195 Identities=21% Similarity=0.273 Sum_probs=142.5
Q ss_pred CceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH-
Q 021028 78 KKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA- 144 (318)
Q Consensus 78 ~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~~~~llA- 144 (318)
|.+||.||+||.. +|+||+++.| .++.+|. ||+++-+|++.+|.++ |. +-+.+++|.+.+..++..
T Consensus 63 p~~vYcGfDPTA~SLHvGNLl~lm-~L~hfqr~Gh~~ialIGgATa~vGDPSGrktER~~l~~d~~~~N~~~I~~ql~~i 141 (467)
T KOG2623|consen 63 PQYVYCGFDPTAESLHVGNLLALM-VLIHFQRAGHRPIALIGGATASVGDPSGRKTERGQLAEDTREANSRSITQQLCKI 141 (467)
T ss_pred CceEEecCCCcHHhhhhcchHHHH-HHHHHHHcCCCceEEeccccccccCCCCCccchhhhhhHHHHHhHHHHHHHHHHH
Confidence 5899999999986 9999999865 8888887 9999999999999997 32 124455565544444433
Q ss_pred ---------cCCCCCceEEEEcCCchhhhHHHHHHh---ccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhh
Q 021028 145 ---------CGIDNSKASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDI 212 (318)
Q Consensus 145 ---------~GiDpek~~i~~qS~~~~~~el~w~L~---~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDi 212 (318)
+|....+-.|+.|++|.....+-=+|. .++.++.|.+.-+.+.+-. ..+++++.+|+|-+|||+|.
T Consensus 142 f~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~SV~~RLe--s~~GlSftEFtYQ~lQAYDf 219 (467)
T KOG2623|consen 142 FENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARDSVKSRLE--SPNGLSFTEFTYQLLQAYDF 219 (467)
T ss_pred HhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHHHHHHhhc--CCCCCcHHHHHHHHHHHHhH
Confidence 244446678999999976544333333 4666676555555443222 24689999999999999999
Q ss_pred hc----ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 213 LL----YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 213 l~----~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
++ +++.++.+|.|||.||+.+-|+.+|+-..- +.+|.+..++++.. +| .|..||.
T Consensus 220 y~L~~~~g~~~QlGGsDQwGNitaG~dlI~ki~~~~------------~~vfGlT~PLlTss--------tG-~KlGKSa 278 (467)
T KOG2623|consen 220 YHLYENYGCRFQLGGSDQWGNITAGTDLIRKIMPIQ------------AFVFGLTFPLLTSS--------TG-AKLGKSA 278 (467)
T ss_pred HHHHHhcCeeEEecccccccccchHHHHHHHhcccc------------cceeeeeeeeEecC--------cc-hhhccCC
Confidence 99 489999999999999999999999986320 12344444455432 66 8999998
Q ss_pred CCCCCeEeccC
Q 021028 289 PSDQSRINLLD 299 (318)
Q Consensus 289 p~~~s~I~L~D 299 (318)
+|+|||+-
T Consensus 279 ---GnAvWLdp 286 (467)
T KOG2623|consen 279 ---GNAVWLDP 286 (467)
T ss_pred ---CceEEecC
Confidence 68999973
No 27
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.68 E-value=2.2e-16 Score=146.60 Aligned_cols=170 Identities=19% Similarity=0.182 Sum_probs=122.6
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EEEEc
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA-------SVFVQ 157 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~-------~i~~q 157 (318)
.|||.+||||+.+++.+|...+. +.++++.|.|. ++ .....+..+.+.+++.++||++|+. .+|.|
T Consensus 9 sPtG~LHlG~~~~al~n~l~ar~~~G~~ilRieDt----d~--~r~~~~~~~~i~~dL~wlGl~~d~~~~~~g~~~~~~Q 82 (239)
T cd00808 9 SPTGFLHIGGARTALFNYLFARKHGGKFILRIEDT----DQ--ERSVPEAEEAILEALKWLGLDWDEGPDVGGPYGPYRQ 82 (239)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEECcC----CC--CCCchHHHHHHHHHHHHcCCCCCcCCccCCCCCCEee
Confidence 57899999999999999998876 66778889994 21 2345567778888999999999974 38999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia 237 (318)
|+..+. |.-. +.+|. ..| =|..+|++-+++|...++++.|+.|.|+..|....+.+.
T Consensus 83 S~r~~~---y~~~-----~~~L~----------~~g-----dg~ptY~~a~~vDD~~~~ithViRG~D~~~~t~~q~~l~ 139 (239)
T cd00808 83 SERLEI---YRKY-----AEKLL----------EKG-----DGFPTYHLANVVDDHLMGITHVIRGEEHLSSTPKQILLY 139 (239)
T ss_pred eCCHHH---HHHH-----HHHHH----------HcC-----CCCcccccHHHHhHHhcCCCEEEEChhhhhChHHHHHHH
Confidence 985321 1111 11111 011 267899999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc----CCHHHHHHhhc
Q 021028 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 309 (318)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~----D~pe~I~~KI~ 309 (318)
+.+|. +.|...+. +.+.+. +| .||||+..+ .+|.-. -+|+.|.+-+.
T Consensus 140 ~aLg~------------------~~p~~~h~---pll~~~-~g-~KLSKR~~~--~~l~~lr~~G~~p~ai~~~l~ 190 (239)
T cd00808 140 EALGW------------------EPPKFAHL---PLILNP-DG-KKLSKRKGD--TSISDYREEGYLPEALLNYLA 190 (239)
T ss_pred HHcCC------------------CCCceEee---ccccCC-CC-CcccCCCCC--ccHHHHHHCCCCHHHHHHHHH
Confidence 99973 34654443 445665 56 799999842 233221 34666665554
No 28
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.51 E-value=1.3e-13 Score=117.48 Aligned_cols=63 Identities=43% Similarity=0.477 Sum_probs=53.3
Q ss_pred hhHHHhhhhhcccc---cEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC
Q 021028 204 YPVLMASDILLYQS---DFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG 280 (318)
Q Consensus 204 YPlLQaaDil~~~a---divpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg 280 (318)
||+.|+||++.+.. |++++|.||++|++..++++++++.. ..|..+.. .+|.+. +|
T Consensus 78 y~~~~~a~~~~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~-----------------~~p~~~~~---~~l~~~-~g 136 (143)
T cd00802 78 YMFLQAADFLLLYETECDIHLGGSDQLGHIELGLELLKKAGGP-----------------ARPFGLTF---GRVMGA-DG 136 (143)
T ss_pred HHHHHHHHHHHHhhCCcEEEEechhHHHHHHHHHHHHHHhCCC-----------------CCceEEEe---CCeECC-CC
Confidence 99999999999999 99999999999999999999998721 23666665 567776 55
Q ss_pred CCCccCCC
Q 021028 281 LSKMSKSA 288 (318)
Q Consensus 281 ~~KMSKS~ 288 (318)
+|||||.
T Consensus 137 -~KmSks~ 143 (143)
T cd00802 137 -TKMSKSK 143 (143)
T ss_pred -CcCCCCC
Confidence 7999994
No 29
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=99.34 E-value=5.5e-12 Score=116.71 Aligned_cols=167 Identities=20% Similarity=0.215 Sum_probs=119.8
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~ 163 (318)
.|||.+||||...++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||++|+ .+++||+..+.
T Consensus 9 sPtG~lHlG~~r~al~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wd~-~~~~QS~r~~~ 80 (230)
T cd00418 9 SPTGYLHIGHARTALFNFAFARKYGGKFILRIEDT-------DPERSRPEYVESILEDLKWLGLDWDE-GPYRQSDRFDL 80 (230)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCeEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCC-CeeehhcCHHH
Confidence 57899999999999999987755 78899999998 43 34456778889999999999995 38999986432
Q ss_pred hHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHHHhhhh
Q 021028 164 VELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYL 243 (318)
Q Consensus 164 ~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~ 243 (318)
|.-. +++. .. ++ |..+|=+--+.|=..++.+.|+-|.|+..+-..-+.|++.+|
T Consensus 81 ---y~~~--------~~~L-------~~---~g---g~p~Y~la~vvDD~~~gIThViRG~D~l~st~~q~~l~~~Lg-- 134 (230)
T cd00418 81 ---YRAY--------AEEL-------IK---KG---GYPLYNFVHPVDDALMGITHVLRGEDHLDNTPIQDWLYEALG-- 134 (230)
T ss_pred ---HHHH--------HHHH-------HH---cC---CCccccccccccccccCCCEEEECHhhhhchHHHHHHHHHcC--
Confidence 1111 0111 11 11 556666666777777899999999999999999999999987
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc----CCHHHHHHhhc
Q 021028 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL----DPKDVIANKIK 309 (318)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~----D~pe~I~~KI~ 309 (318)
++.|...+. ++|.+. +| +||||+..+ .+|.-. -.|+.|..-+.
T Consensus 135 ----------------~~~P~~~H~---pll~~~-~g-~KLSKr~~~--~~i~~~r~~G~~p~ai~~~l~ 181 (230)
T cd00418 135 ----------------WEPPRFYHF---PRLLLE-DG-TKLSKRKLN--TTLRALRRRGYLPEALRNYLA 181 (230)
T ss_pred ----------------CCCCeEEEe---eeeeCC-CC-CCccCcCCC--cCHHHHHHCCCcHHHHHHHHH
Confidence 345776665 456665 55 799999852 333222 34666665544
No 30
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.06 E-value=9.5e-10 Score=111.59 Aligned_cols=173 Identities=21% Similarity=0.209 Sum_probs=116.6
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCce------EEEEc
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA------SVFVQ 157 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~------~i~~q 157 (318)
.|||.+||||...++.+|+..+. |.++++.|.|. |. ....+..+.+.+++.++||++|.. -.|.|
T Consensus 12 SPtG~lHiG~~rtal~n~l~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~De~p~~~~~gpy~Q 84 (476)
T PRK01406 12 SPTGYLHIGGARTALFNWLFARHHGGKFILRIEDT-------DQERSTEEAEEAILEGLKWLGLDWDEGPDGGPYGPYRQ 84 (476)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHCCCCCCCCCccCCCCceeh
Confidence 56799999999999999987755 78999999998 44 345556778889999999999853 14999
Q ss_pred CCchh-hhHHHHH-------HhccCCHHHHhchhh----------h---------HHHhhhh--CC--------------
Q 021028 158 SHVRA-HVELMWL-------LSSATPIGWLNKMIQ----------F---------KEKSHKA--GG-------------- 194 (318)
Q Consensus 158 S~~~~-~~el~w~-------L~~~~tv~~L~r~~~----------f---------k~~~~~~--~~-------------- 194 (318)
|+..+ |.+..-. +.|+||-.+|..... | .+..+.. |.
T Consensus 85 S~r~~~y~~~~~~L~~~g~aY~C~cs~eel~~~r~~~~~~~~~~~y~~~cr~~~~~~~~~~~~~g~~~~iR~k~p~~~~~ 164 (476)
T PRK01406 85 SERLDIYKEYAEQLLEEGKAYYCYCTPEELEAMREEQRAAGEPPRYDGRCRDLTKEEVAARLAAGEPPVIRFKVPDEGEV 164 (476)
T ss_pred hcCHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHHHHHhCCCCCCCCccccCCCHHHHHHHHhCCCCeeEEEEcCCCCce
Confidence 98533 2221111 568999988764311 0 0000000 00
Q ss_pred ------------CCcccccch------hhHHHhhhhhc---ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccC
Q 021028 195 ------------ENVGVALLT------YPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLG 253 (318)
Q Consensus 195 ------------~~~~~g~l~------YPlLQaaDil~---~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~ 253 (318)
....++.++ ||..+.+|++. .+.|.|+.|.||..|...-..+.+.++.
T Consensus 165 ~~~D~i~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vVdD~~~~ithvIrG~d~~~~t~~q~~l~~alG~----------- 233 (476)
T PRK01406 165 VFDDLVRGEIEFPNSELDDFVILRSDGTPTYNFAVVVDDHLMGITHVIRGEDHLSNTPKQILLYEALGW----------- 233 (476)
T ss_pred EEEEeccceEEeccccCCCcEEEecCCCccccchHHHHHHHcCCCEEEECchhhcCHHHHHHHHHHhCC-----------
Confidence 000011111 66667777744 5899999999999999999999999872
Q ss_pred CCCCccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 254 GRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 254 ~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
..|...+. +.+.++ +| +||||.+
T Consensus 234 -------~~p~~~H~---pli~~~-~g-~klSKR~ 256 (476)
T PRK01406 234 -------EVPVFAHL---PLILGP-DG-KKLSKRH 256 (476)
T ss_pred -------CCCeEEEe---eeeeCC-CC-CcccCcC
Confidence 34665555 345566 66 7999997
No 31
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.01 E-value=1.8e-09 Score=103.51 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=113.0
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~ 163 (318)
.|||.+||||+..++.+|...+. +.++++.|.|. |+ ....+..+.+.+++.++||++|. .+++||+..+.
T Consensus 13 SPTG~LHlG~~rtAL~n~l~Ar~~~G~~iLRiEDt-------D~~R~~~~~~~~I~~dL~wlGl~wDe-~~~~QS~r~~~ 84 (299)
T PRK05710 13 SPSGPLHFGSLVAALGSWLDARAHGGRWLLRIEDI-------DPPREVPGAADAILADLEWLGLHWDG-PVLYQSQRHDA 84 (299)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCCccchHHHHHHHHHHHHCCCCCCC-CceEeeccHHH
Confidence 56799999999999999988865 78999999997 33 34556778889999999999996 37889985421
Q ss_pred ----h----HHHHHHhccCCHHHHhchhh--------hHHHhhhhCC-CC--------c---------------------
Q 021028 164 ----V----ELMWLLSSATPIGWLNKMIQ--------FKEKSHKAGG-EN--------V--------------------- 197 (318)
Q Consensus 164 ----~----el~w~L~~~~tv~~L~r~~~--------fk~~~~~~~~-~~--------~--------------------- 197 (318)
. +.-+.+.|+||-.+|++..+ |...-+.... +. +
T Consensus 85 Y~~~~~~L~~~G~aY~C~Ctr~el~~~~~~~~~~~~~y~g~cr~~~~~~~~~~~iRlk~~~~~~~~~D~~~G~~~~~~~~ 164 (299)
T PRK05710 85 YRAALDRLRAQGLVYPCFCSRKEIAAAAPAPPDGGGIYPGTCRDLLHGPRNPPAWRLRVPDAVIAFDDRLQGRQHQDLAL 164 (299)
T ss_pred HHHHHHHHHHCCCceecCCCHHHHHHHhhhccCCCCcCCCccccCCccccCCceEEEEcCCCceEEEEecceeEeeCCCC
Confidence 1 11122669999998865421 1000000000 00 0
Q ss_pred cc---------ccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccC
Q 021028 198 GV---------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIP 268 (318)
Q Consensus 198 ~~---------g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~ 268 (318)
.+ |..+|=+-=+.|=...+.+.|.=|.|....-..-..|.+.++ +..|+..+.
T Consensus 165 ~~~D~Vi~R~dg~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~aLg------------------~~~P~y~H~ 226 (299)
T PRK05710 165 AVGDFVLRRADGLFAYQLAVVVDDALQGVTHVVRGADLLDSTPRQIYLQQLLG------------------LPTPRYLHL 226 (299)
T ss_pred CCCCEEEEecCCCccccchhHHhcccCCCCEEEeChhhhhcCHHHHHHHHHcC------------------CCCCeEEEe
Confidence 01 112222222222233578999999999888777777777776 345877766
Q ss_pred CCCcccccCCCCCCCccCCCC
Q 021028 269 PAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 269 ~~~~~lp~L~dg~~KMSKS~p 289 (318)
+.|.+. +| +||||++.
T Consensus 227 ---pll~~~-~g-~kLSKr~~ 242 (299)
T PRK05710 227 ---PLVLNA-DG-QKLSKQNG 242 (299)
T ss_pred ---ecccCC-CC-CcccccCC
Confidence 346665 66 89999973
No 32
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.96 E-value=4.2e-09 Score=107.35 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=116.8
Q ss_pred eEEEeeCCC--CccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGVQPT--GSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi~PT--G~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+.|.|| |.+||||...++.+|...+. |.++++.|.|. |. ....+..+.+.+++.++||++|. ..|
T Consensus 4 ~vrtRFAPSPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~~~~~~i~~~L~WLGl~wDe-~py 75 (513)
T PRK14895 4 NVITRFAPSPTGFLHIGSARTALFNYLFARHHNGKFLLRIEDT-------DKERSTKEAVEAIFSGLKWLGLDWNG-EVI 75 (513)
T ss_pred CeeEeeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 356777666 99999999999999987765 78899999998 44 23445667788899999999985 389
Q ss_pred EcCCchh-hhHHHH-H------HhccCCHHHHhchhh----------hHHHhhhh-------CC----------C-Ccc-
Q 021028 156 VQSHVRA-HVELMW-L------LSSATPIGWLNKMIQ----------FKEKSHKA-------GG----------E-NVG- 198 (318)
Q Consensus 156 ~qS~~~~-~~el~w-~------L~~~~tv~~L~r~~~----------fk~~~~~~-------~~----------~-~~~- 198 (318)
+||+..+ |.+..- + +.|+||-.+|+.... |...-+.. +. + .+.
T Consensus 76 ~QSeR~~~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~~~ 155 (513)
T PRK14895 76 FQSKRNNLYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSITI 155 (513)
T ss_pred eEeCcHHHHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCceEE
Confidence 9999532 211111 1 558999888764421 10000000 00 0 000
Q ss_pred ----cccchh----------------hHHHhh---hhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 021028 199 ----VALLTY----------------PVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (318)
Q Consensus 199 ----~g~l~Y----------------PlLQaa---Dil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~ 255 (318)
-|.+.+ |..+-+ |=...+.+.|..|.||..|.-.-..+.+.++
T Consensus 156 ~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~ithVIRG~d~~~~t~~q~~l~~aLG-------------- 221 (513)
T PRK14895 156 HDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGITHIIRGDDHLTNAARQLAIYQAFG-------------- 221 (513)
T ss_pred EeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCCCEEEECchHhhhHHHHHHHHHHcC--------------
Confidence 011111 111222 1122479999999999999999999999887
Q ss_pred CCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 256 ~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
+..|...+. +.|.++ +| +||||.+.
T Consensus 222 ----~~~p~~~H~---plv~~~-~g-~KLSKR~g 246 (513)
T PRK14895 222 ----YAVPSMTHI---PLIHGA-DG-AKLSKRHG 246 (513)
T ss_pred ----CCCCeEEEE---EeEEcC-CC-CccccccC
Confidence 234766665 457776 66 79999974
No 33
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=98.94 E-value=7e-09 Score=105.14 Aligned_cols=178 Identities=21% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~- 162 (318)
.|||.+||||...++.+|...+. |.++++.|-|. |+ ....+..+.+.+++.++||++|. ..|.||+..+
T Consensus 9 sPtG~lHiG~~rtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~de-~~~~QS~r~~~ 80 (470)
T TIGR00464 9 SPTGYLHIGGARTALFNYLFAKHTGGEFILRIEDT-------DLERNIEEAEEAILEGLKWLGISWDE-GPYYQSQRLDI 80 (470)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCccCChHHHHHHHHHHHHCCCCCCC-CeeehhCCHHH
Confidence 57799999999999999987754 78999999998 43 34455777889999999999985 4899998533
Q ss_pred hhHHHHH-------HhccCCHHHHhchhh-------------------hHHHhhh--hCC----------CC-cc-----
Q 021028 163 HVELMWL-------LSSATPIGWLNKMIQ-------------------FKEKSHK--AGG----------EN-VG----- 198 (318)
Q Consensus 163 ~~el~w~-------L~~~~tv~~L~r~~~-------------------fk~~~~~--~~~----------~~-~~----- 198 (318)
|.+..-. +.|+||-.+|..... -.+..+. .|. +. +.
T Consensus 81 y~~~~~~L~~~g~aY~C~ct~~~l~~~r~~~~~~~~~~~y~~~cr~l~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~~ 160 (470)
T TIGR00464 81 YKKYAKELLEEGLAYRCYCSKERLERLREEQKANKETPRYDGRCRNLHEEEIENKLAKGIPPVVRFKIPQEAVVSFNDQV 160 (470)
T ss_pred HHHHHHHHHHcCCEEecCCChHHHHHHHHHHhhCCCCCCCCCCcccCCHHHHHhHHhcCCCceEEEEcCCCCceeEEecc
Confidence 2221111 558899888763311 0000000 000 00 00
Q ss_pred cccch----------------hhHHH---hhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCcc
Q 021028 199 VALLT----------------YPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAI 259 (318)
Q Consensus 199 ~g~l~----------------YPlLQ---aaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~ 259 (318)
-|.+. +|..+ +.|=...+.|.|..|.||..|...-..+.+.++.
T Consensus 161 ~G~~~~~~~~~~D~Vl~RsdG~ptY~~A~~vdD~~~~ithvIrG~d~~~~t~~~~~l~~aLg~----------------- 223 (470)
T TIGR00464 161 RGEITFQNSELDDFVILRSDGSPTYNFAVVVDDYLMKITHVIRGEDHISNTPKQILIYQALGW----------------- 223 (470)
T ss_pred cceEEecCccCCCeEEEecCCCcccccHHHHHHHhCCCCEEEECchhhcCHHHHHHHHHHcCC-----------------
Confidence 01111 12221 1122224899999999999999999999998872
Q ss_pred ccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc
Q 021028 260 FKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (318)
Q Consensus 260 ~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~ 298 (318)
..|...+. +.+.++ +| +||||.. +.+.|.
T Consensus 224 -~~p~~~H~---p~l~~~-~g-~kLSKR~----g~~~l~ 252 (470)
T TIGR00464 224 -KIPVFAHL---PMILDE-DG-KKLSKRD----GATSIM 252 (470)
T ss_pred -CCCeEEEE---eeeecC-CC-ccccccC----CCccHH
Confidence 34655555 335555 66 7999997 355553
No 34
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=98.81 E-value=5.3e-08 Score=92.36 Aligned_cols=189 Identities=16% Similarity=0.161 Sum_probs=118.6
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~- 162 (318)
.|||.|||||...++.+|...+. |.++++.|.|. |+ ....+..+.+.+++.++||++|+. .++||+..+
T Consensus 8 SPtG~lHiG~~rtAL~n~l~Ar~~gG~~iLRiEDt-------D~~R~~~~~~~~I~~dL~wLGl~wDe~-~~~QS~r~~~ 79 (272)
T TIGR03838 8 SPSGPLHFGSLVAALGSYLDARAHGGRWLVRIEDL-------DPPREVPGAADDILRTLEAYGLHWDGE-VVYQSQRHAL 79 (272)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCCC-eeeeeCCHHH
Confidence 57899999999999999987755 78899999998 43 234456778888999999999963 689998643
Q ss_pred hhHHHHH-------HhccCCHHHHhchh-----hhH--HHh-h-hhCCC-----------Ccc-----cccc--------
Q 021028 163 HVELMWL-------LSSATPIGWLNKMI-----QFK--EKS-H-KAGGE-----------NVG-----VALL-------- 202 (318)
Q Consensus 163 ~~el~w~-------L~~~~tv~~L~r~~-----~fk--~~~-~-~~~~~-----------~~~-----~g~l-------- 202 (318)
|.+..-. +.|+||-.+++... .|. +.. . ...++ .+. .|.+
T Consensus 80 Y~~~~~~L~~~G~aY~C~Ct~eel~~~~~~~~~~y~~~cr~~~~~~~~~~~~~Rlk~~~~~~~~~D~~~g~~~~~~~~~~ 159 (272)
T TIGR03838 80 YQAALDRLLAAGLAYPCQCTRKEIAAAAGDGGGIYPGTCRNGLLGRPARPAAWRLRVPDGVIAFDDRLQGPQQQDLAAAV 159 (272)
T ss_pred HHHHHHHHHHcCCEEecCCCHHHHHHHhcCCCCCCCchhhcccccccCCCceEEEecCCCCceEEEeeeeEEEecCcccC
Confidence 2211111 55899999886541 121 110 0 00000 000 0111
Q ss_pred ----h-----hhHHHhhhh---hcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCC
Q 021028 203 ----T-----YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPA 270 (318)
Q Consensus 203 ----~-----YPlLQaaDi---l~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~ 270 (318)
+ ||..+=|.. ..++.+.|.=|.|...+--.-..|.+.++ +..|...+.
T Consensus 160 ~D~vi~R~Dg~ptY~fA~vVDD~~~gIThViRG~D~l~~t~~q~~l~~aLg------------------~~~P~y~H~-- 219 (272)
T TIGR03838 160 GDFVLRRADGLFAYQLAVVVDDAAQGITHVVRGADLLDSTPRQIYLQRLLG------------------LPPPRYLHL-- 219 (272)
T ss_pred CCEEEEecCCCccccChhhhhcccCCCCEEEeCHhhhhccHHHHHHHHHhC------------------CCCCeEEec--
Confidence 1 233332222 22479999999999888777777777776 345766665
Q ss_pred CcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 271 GARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 271 ~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+.|.+. +| +|+||++.. ..|.=.++++.+..=
T Consensus 220 -pll~~~-~g-~kLSKR~~~--~~i~~~~~~~~~~~~ 251 (272)
T TIGR03838 220 -PLVVNA-DG-EKLSKQNGA--PALDLSHPLPALLAA 251 (272)
T ss_pred -hhhhCC-CC-CeeeccCCc--cchhcCCcHHHHHHH
Confidence 456676 67 799999842 344333555444443
No 35
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=2.1e-08 Score=101.52 Aligned_cols=178 Identities=19% Similarity=0.185 Sum_probs=115.8
Q ss_pred EEEeeC--CCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 81 i~tGi~--PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.+=|. |||.+||||...++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||+++.. +++
T Consensus 10 v~tRFAPsPtG~LHiG~artAl~N~~~Ar~~~G~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WLGl~wde~-~~~ 81 (472)
T COG0008 10 VRTRFAPSPTGYLHIGHARTALLNYLYARKYGGKFILRIEDT-------DPERETPEAEDAILEDLEWLGLDWDEG-PYY 81 (472)
T ss_pred eEEEECcCCCCccchHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCCCCHHHHHHHHHHHHhcCCCCCCc-eee
Confidence 566664 5599999999999999987766 78999999998 44 345566777888999999999964 899
Q ss_pred cCCchh-hh-HHHHH------HhccCCHHHHhchh-----------hhH--HH-------hhhhCC--------------
Q 021028 157 QSHVRA-HV-ELMWL------LSSATPIGWLNKMI-----------QFK--EK-------SHKAGG-------------- 194 (318)
Q Consensus 157 qS~~~~-~~-el~w~------L~~~~tv~~L~r~~-----------~fk--~~-------~~~~~~-------------- 194 (318)
||+..+ +. ...++ +.|++|-.+|+.+. .|. +. ....+.
T Consensus 82 QS~r~~~Y~~~~~~Li~~G~AY~c~ct~eele~~R~~~~~~g~~p~~y~r~~~~L~~~~~~~~~~~~~~~viR~k~~~~~ 161 (472)
T COG0008 82 QSERFDIYYEYAEKLIEKGKAYVCYCTPEELEEMRELRGALGEPPPSYDRDERNLTLFEKMADLGEGGPAVVRLKIPMAH 161 (472)
T ss_pred hhhhHHHHHHHHHHHHHCCCeEEecCCHHHHHHHHHHHhhcCCCCCCCCchhhccchHHHHhhcccCCCeEEEEeCCCCC
Confidence 999643 21 12223 44899987665541 111 00 000000
Q ss_pred CC-----cccccchhh------HHHhhhhhc------------ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccc
Q 021028 195 EN-----VGVALLTYP------VLMASDILL------------YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKK 251 (318)
Q Consensus 195 ~~-----~~~g~l~YP------lLQaaDil~------------~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~ 251 (318)
.+ .-.|.+..+ +++-+|.+. ++.+.|+-|.|+..+=..-+-|-+-|+
T Consensus 162 ~~~~~~D~v~g~i~~~~~~~~dv~~r~dg~ptY~favvvDD~~mgITHviRG~d~~~nt~~q~~l~~~lg---------- 231 (472)
T COG0008 162 PGPVFRDLVRGRIVFAPKHPDFVILRYDGYPTYNFAVVVDDHLMGITHVLRGEDHLDNTPRQIWLYEALG---------- 231 (472)
T ss_pred CCCccccceeeeEecCccCCcceeecCCCCcccceeeeechhhcCCceEEechhhccCCHHHHHHHHHcC----------
Confidence 00 001222222 233333332 368999999999988877777777766
Q ss_pred cCCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 252 LGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 252 ~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
++.|...+. ++|.+ .+| +||||++.
T Consensus 232 --------~~~P~~~H~---~li~~-~~g-~kLSKr~~ 256 (472)
T COG0008 232 --------WPPPVYAHL---PLLLN-EDG-KKLSKRKG 256 (472)
T ss_pred --------CCCCcEEEe---eeeec-CCC-CeecCccC
Confidence 345877766 45666 455 79999973
No 36
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=98.77 E-value=3.2e-08 Score=99.29 Aligned_cols=88 Identities=25% Similarity=0.299 Sum_probs=67.2
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~- 162 (318)
.|||.+||||...++.+|...+. |.++++.|-|. |. ....+..+.+.+++.++||++| +.|+||+..+
T Consensus 7 SPTG~LHiG~artAL~n~l~Ar~~gG~fiLRiEDT-------D~~R~~~e~~~~I~~~L~WlGl~wD--e~y~QSeR~~~ 77 (433)
T PRK12410 7 SPTGDMHIGNLRAAIFNYIVAKQQNEDFLIRIEDT-------DKERNIEGKDKEILEILNLFGISWD--KLVYQSENLKF 77 (433)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCChHHHHHHHHHHHHcCCCCC--CCeehhccHHH
Confidence 48899999999999999988765 88999999998 43 3345567788899999999999 5799999532
Q ss_pred hhHHHHH-------HhccCCHHHHhch
Q 021028 163 HVELMWL-------LSSATPIGWLNKM 182 (318)
Q Consensus 163 ~~el~w~-------L~~~~tv~~L~r~ 182 (318)
|.+..-. +.|+||-.+|+..
T Consensus 78 Y~~~a~~Li~~G~AY~C~cs~eel~~~ 104 (433)
T PRK12410 78 HRQMAEKLLSEKKAFACFCSEEELEAK 104 (433)
T ss_pred HHHHHHHHHHcCCeeeecCCHHHHHHH
Confidence 2111111 5589999887644
No 37
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=98.72 E-value=4.9e-08 Score=99.78 Aligned_cols=176 Identities=16% Similarity=0.112 Sum_probs=113.6
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+=| .|||.+||||+..++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||+++ +++
T Consensus 11 ~v~tRFAPsPtG~LHiGharaAlln~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~~~I~~dL~WLGl~wD--~~~ 81 (523)
T PLN03233 11 QIVTRFPPEPSGYLHIGHAKAALLNDYYARRYKGRLILRFDDT-------NPSKEKAEFEESIIEDLGKIEIKPD--SVS 81 (523)
T ss_pred eEEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCccchHHHHHHHHHHHHhCCCCC--CCc
Confidence 355556 56699999999999999977755 78899999998 44 3456678888999999999998 479
Q ss_pred EcCCchh-hhHHHHH-------HhccCCHHHHhchh-----------h-------hHHHhh-hhCC-------------C
Q 021028 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSH-KAGG-------------E 195 (318)
Q Consensus 156 ~qS~~~~-~~el~w~-------L~~~~tv~~L~r~~-----------~-------fk~~~~-~~~~-------------~ 195 (318)
+||+..+ +.+.+-. +.|.+|-.+|+... + |..+.+ ...+ .
T Consensus 82 ~qSdr~~~y~~~a~~Li~~G~AY~C~cs~eel~~~r~~~~~~~~R~~s~ee~l~~~~~m~~G~~~~~~~~lR~K~d~~~~ 161 (523)
T PLN03233 82 FTSDYFEPIRCYAIILIEEGLAYMDDTPQEEMKKERADRAESKHRNQSPEEALEMFKEMCSGKEEGGAWCLRAKIDMQSD 161 (523)
T ss_pred cccccHHHHHHHHHHHHHcCCeEecCCCHHHHHHHHhhhccCccccCCHHHHHHHHHHHhcccccCCCeEEEEeCcccCC
Confidence 9999643 2222221 55889988874321 1 111100 0000 0
Q ss_pred Ccccccc------------------hhhHHHhhhhhc---ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 021028 196 NVGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (318)
Q Consensus 196 ~~~~g~l------------------~YPlLQaaDil~---~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~ 254 (318)
+.++.-+ .||..+=|-.+- .+.++|+-|.|...+-..-.-|.+.++
T Consensus 162 n~~~~D~Vi~R~d~~~h~~~Gd~~~~~PtY~fA~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg------------- 228 (523)
T PLN03233 162 NGTLRDPVLFRQNTTPHHRSGTAYKAYPTYDLACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG------------- 228 (523)
T ss_pred CCCCcCCEEEEEcCCcccccCCcccceeccCCceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC-------------
Confidence 0111111 255555443332 479999999999998888888888876
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 255 ~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
+..|.. +.+ ...++ +| .||||+.
T Consensus 229 -----~~~P~~-~~f---~rln~-~~-~kLSKR~ 251 (523)
T PLN03233 229 -----LRRPRI-HAF---ARMNF-MN-TVLSKRK 251 (523)
T ss_pred -----CCCCee-eee---EEECC-CC-CcccccC
Confidence 234654 222 24455 56 6999996
No 38
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.71 E-value=2.1e-07 Score=91.29 Aligned_cols=83 Identities=23% Similarity=0.291 Sum_probs=55.7
Q ss_pred CceEEEeeCCCCccchhhHHHHHH--HHHHHhc--cCcE-EEEEeccceec---------------C-C-------C--C
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYET-LFFIVDLHAIT---------------L-P-------Y--D 127 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v-~ilIaD~hA~t---------------~-~-------~--d 127 (318)
+..|-||+-|+|.+||||+...+. -+.+.++ |+++ +++..|.|--+ + | . .
T Consensus 20 ~~~v~tgi~psG~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~pi~~ip~p~g~~ 99 (353)
T cd00674 20 KYVVASGISPSGHIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMPLSSVPDPFGCC 99 (353)
T ss_pred eEEEecCCCCCCCcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCccchhchhhcCCC
Confidence 467888999999999999886552 2444433 7787 57889999321 1 1 0 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh
Q 021028 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (318)
Q Consensus 128 ~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~ 163 (318)
.+-...+...+.+.+..+||+.+ ++.+++.+.+
T Consensus 100 ~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~ 132 (353)
T cd00674 100 ESYAEHFERPFEESLEKLGIEVE---FISQSQMYKS 132 (353)
T ss_pred HHHHHHHHHHHHHHHHHcCCeee---eeecCCchhh
Confidence 23345556677777888999764 7888876543
No 39
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.69 E-value=1.6e-07 Score=96.18 Aligned_cols=59 Identities=27% Similarity=0.473 Sum_probs=44.6
Q ss_pred ccccEEEecCcchH-HHHHHHHHHH-HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQ-HLELTRELAE-RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~-hi~l~Rdia~-k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
+++|+.|.|.||.. +..+++++++ .++. ..|..+.. .++..- +| +|||||. +
T Consensus 233 l~Vd~e~~GkDh~~~s~~~~~~i~~~ilg~------------------~~P~~~~y---~~v~~~-~G-~KMSKSk---G 286 (510)
T PRK00750 233 LGVDFEPFGKDHASASYDTSKKIAREILGG------------------EPPEPFVY---ELFLDK-KG-EKISKSK---G 286 (510)
T ss_pred cCCCEEeeCcccCcchHHHHHHHHHHHcCC------------------CCCeeeee---eeEEeC-CC-CcccccC---C
Confidence 46999999999999 9999999999 6652 23655443 344432 45 8999997 6
Q ss_pred CeEeccC
Q 021028 293 SRINLLD 299 (318)
Q Consensus 293 s~I~L~D 299 (318)
|.|.+.|
T Consensus 287 N~i~~~d 293 (510)
T PRK00750 287 NVITIED 293 (510)
T ss_pred CccCHHH
Confidence 8888765
No 40
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=98.67 E-value=1.1e-07 Score=98.53 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=114.5
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+=| +|||.|||||+..++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||+++. .++
T Consensus 52 ~v~tRFAPsPtGyLHIGharaAllN~l~Ar~~gG~~iLRiEDT-------Dp~R~~~e~~d~IleDL~WLGl~wDe-~~~ 123 (601)
T PTZ00402 52 KVVTRFPPEASGFLHIGHAKAALINSMLADKYKGKLVFRFDDT-------NPSKEKEHFEQAILDDLATLGVSWDV-GPT 123 (601)
T ss_pred eeEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CCcccCHHHHHHHHHHHHHCCCCCCC-cee
Confidence 455556 56699999999999999987765 78899999998 54 35566788899999999999985 378
Q ss_pred EcCCchhh-hHHHHH-------HhccCCHHHHhchh------hhHHH-----h---hhh--CC--C--------------
Q 021028 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMI------QFKEK-----S---HKA--GG--E-------------- 195 (318)
Q Consensus 156 ~qS~~~~~-~el~w~-------L~~~~tv~~L~r~~------~fk~~-----~---~~~--~~--~-------------- 195 (318)
+||++.+. .+..-. +.|.++-.+++... .+.+. . +.+ +. +
T Consensus 124 ~QSdr~d~y~e~a~~Li~~G~AY~c~cs~eei~~~r~~g~p~~~R~~s~ee~l~~~~~m~~g~~~~~~~~lR~kid~~~~ 203 (601)
T PTZ00402 124 YSSDYMDLMYEKAEELIKKGLAYCDKTPREEMQKCRFDGVPTKYRDISVEETKRLWNEMKKGSAEGQETCLRAKISVDNE 203 (601)
T ss_pred eccccHHHHHHHHHHHHHcCCEEEecCCHHHHHHHHhCCCCCCCCCCCHHHHHHHHHhccccccCCCceEEEEecccCCC
Confidence 99996432 221111 45788877764321 11110 0 000 00 0
Q ss_pred Cccccc------------------chhhHHHhhhhhc---ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 021028 196 NVGVAL------------------LTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (318)
Q Consensus 196 ~~~~g~------------------l~YPlLQaaDil~---~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~ 254 (318)
+.+++- -.||..+=|-.+- .+.++|+-|.|...+-..-.-|.+.++
T Consensus 204 n~~~rD~Vl~R~~~~~h~rtGdk~dgyPtYdfA~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg------------- 270 (601)
T PTZ00402 204 NKAMRDPVIYRVNLTPHARQGTKYKAYPTYDFCCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG------------- 270 (601)
T ss_pred CCCccCCEEEEEcCCcccccCCCCceeeccCcceeeEccccCCceEeechhhhhCcHHHHHHHHHhC-------------
Confidence 000000 1344444332222 479999999999998888888888876
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 255 ~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
+..|...+. ++ .++ +| .||||+.-
T Consensus 271 -----~~~P~~~h~---~r-Ln~-~g-~kLSKRkl 294 (601)
T PTZ00402 271 -----IRKPIVEDF---SR-LNM-EY-SVMSKRKL 294 (601)
T ss_pred -----CCCceEEEE---ee-EcC-CC-CcccccCC
Confidence 334765554 33 355 66 79999974
No 41
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=98.65 E-value=2.8e-07 Score=89.00 Aligned_cols=190 Identities=19% Similarity=0.134 Sum_probs=112.5
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~ 163 (318)
.|||.|||||+..++.+|...+. +.++++.|-|. |+ ....+..+.+..++.++||+++ -.++.||+..+.
T Consensus 9 sPtG~lHiG~~r~al~n~~~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~i~~~L~wlGl~~D-~~~~~QS~r~~~ 80 (314)
T PF00749_consen 9 SPTGYLHIGHARTALLNYLFARKYGGKFILRIEDT-------DPERCRPEFYDAILEDLRWLGLEWD-YGPYYQSDRLEI 80 (314)
T ss_dssp -SSSS-BHHHHHHHHHHHHHHHHTTSEEEEEEETS-------STTTCHHHHHHHHHHHHHHHT---S-TCEEEGGGGHHH
T ss_pred CCCCCcccchhHHHHHHHHHHhccCceEEEecccc-------ccccchhhHHHHHHhheeEEEEecC-CeEEeHHHHHHH
Confidence 57799999999999999987755 78899999998 43 3345667788899999999998 368999986432
Q ss_pred -hHHHHH-------HhccCCHHHHhchhhh------------HH---------Hhh-h-hC----------CC-C-----
Q 021028 164 -VELMWL-------LSSATPIGWLNKMIQF------------KE---------KSH-K-AG----------GE-N----- 196 (318)
Q Consensus 164 -~el~w~-------L~~~~tv~~L~r~~~f------------k~---------~~~-~-~~----------~~-~----- 196 (318)
.+..-. +.|+||-.+|+....- .. +.+ . .+ .+ .
T Consensus 81 Y~~~~~~L~~~g~aY~C~Csr~~l~~~r~~~~~~~~~~~~~y~~~c~~~~~~~~~~~~~~~~~~~iRlk~~~~~~~~~~D 160 (314)
T PF00749_consen 81 YQEAAEKLIDKGKAYPCFCSREELKAAREAQEGAGCPHRPRYPGTCRELTEEEMRAGLAKGGPAVIRLKVPMESPIAFRD 160 (314)
T ss_dssp HHHHHHHHHHTTSEEEEESEHHHHHHHHHHHHHTTSTTTTSBHHHHHCHHHHHHHHHHHTTTSEEEEE-SSSTCCEEEEE
T ss_pred HHHHHHHHhhcCCCccccCCHHHHHHHHHHhhccCCCccccchhhhhhhhHHHHHhhhccCCceeeeeeccccccccccc
Confidence 111111 5588988876644322 00 000 0 00 00 0
Q ss_pred cc-------c------------ccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 021028 197 VG-------V------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (318)
Q Consensus 197 ~~-------~------------g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~ 257 (318)
.- . |..+|-+=-+.|=..++.++|.=|.|...+-..-..|.+.++.
T Consensus 161 ~v~g~i~~~~~~~~D~vi~r~dg~ptY~fA~vVDD~~~gITHViRG~D~l~~t~~Q~~L~~~Lg~--------------- 225 (314)
T PF00749_consen 161 LVRGRIIFDPSDLGDFVIRRSDGYPTYHFAVVVDDHLMGITHVIRGEDLLSSTPRQILLYEALGW--------------- 225 (314)
T ss_dssp TTTEEEEEEGGGSBTEEEESTTSEB-HHHHHHHHHHHTT-SEEEEEGGGTTCHHHHHHHHHHCTS---------------
T ss_pred CcceeeeeccccCCchhccccccCcccccceeecccccccCeEEEccccccccHHHHHHHHHhCC---------------
Confidence 00 0 1122222222233335799999999999988888888888773
Q ss_pred ccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE------eccCCHHHHHHhh
Q 021028 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI------NLLDPKDVIANKI 308 (318)
Q Consensus 258 ~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I------~L~D~pe~I~~KI 308 (318)
..|...+. +.+.+. +| +|+||++.. ..| .-.++|+.+-+=+
T Consensus 226 ---~~P~~~H~---pl~l~~-~g-~kLSKR~~~--~~i~~~~~r~~g~~~~~~l~~L 272 (314)
T PF00749_consen 226 ---PPPPYAHL---PLILNE-DG-KKLSKRKGA--KSIELGDYREWGDPPEATLNYL 272 (314)
T ss_dssp ---SS-EEEEE---EEEEET-TS-SBSSTTCSH--HBHHHHHHHHTT-THHHHHHHH
T ss_pred ---CCcceEee---eeeecC-CC-cEechhhcc--ccccccccccCCCCHHHHHHHH
Confidence 34655554 345555 66 899999842 232 2235666655443
No 42
>PLN02627 glutamyl-tRNA synthetase
Probab=98.65 E-value=4.5e-07 Score=93.03 Aligned_cols=96 Identities=19% Similarity=0.166 Sum_probs=69.7
Q ss_pred eEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE----
Q 021028 80 RIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS---- 153 (318)
Q Consensus 80 ~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~---- 153 (318)
++=.-=.|||.+||||...++.+|...+. |.++++.|.|. |. ....+..+.+.+++.++||++|...
T Consensus 47 r~RFAPSPTG~LHiG~aRtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~I~~~L~WLGl~wDegp~~gg 119 (535)
T PLN02627 47 RVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDT-------DLARSTKESEEAVLRDLKWLGLDWDEGPDVGG 119 (535)
T ss_pred EEEeCCCCCCCccHHHHHHHHHHHHHHHHhCCEEEEEeCcC-------CCCCCChHHHHHHHHHHHHcCCCCCcCcccCC
Confidence 33334466799999999999999988765 78999999998 43 3445577788899999999999642
Q ss_pred ---EEEcCCchh-hhHHHHH-------HhccCCHHHHhch
Q 021028 154 ---VFVQSHVRA-HVELMWL-------LSSATPIGWLNKM 182 (318)
Q Consensus 154 ---i~~qS~~~~-~~el~w~-------L~~~~tv~~L~r~ 182 (318)
.|+||+..+ |.+..-. +.|+||-.+|+..
T Consensus 120 ~~gpy~QSeR~~~Y~~~a~~Li~~G~AY~CfCs~eel~~~ 159 (535)
T PLN02627 120 EYGPYRQSERNAIYKQYAEKLLESGHVYPCFCTDEELEAM 159 (535)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHcCCeeeccCChHHHHHH
Confidence 499998533 2111111 5589998887543
No 43
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.64 E-value=1.4e-07 Score=87.90 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=101.1
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~- 162 (318)
.|||.+||||...++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||++| ++++||+..+
T Consensus 9 sPtG~lHlG~~~~al~~~l~Ar~~~G~~iLRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wD--~~~~QS~r~~~ 79 (238)
T cd00807 9 EPNGYLHIGHAKAILLNFGYAKKYGGRCNLRFDDT-------NPEKEEEEYVDSIKEDVKWLGIKPY--KVTYASDYFDQ 79 (238)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCcccchHHHHHHHHHHHHcCCCCC--CceecccCHHH
Confidence 57899999999999999977754 78899999998 54 3455677788999999999999 6899998543
Q ss_pred hhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHH---hhhhhcccccEEEecCcchHHHHHHHHHHHH
Q 021028 163 HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAER 239 (318)
Q Consensus 163 ~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQ---aaDil~~~adivpvG~DQ~~hi~l~Rdia~k 239 (318)
+.+..-.|. ++-..|.. ...+ . ...+||..| +.|=...+.+.|.=|.|....-..-.-|.+.
T Consensus 80 Y~~~~~~L~--------~~g~aY~~--~~~~-~----~~~i~ptY~lA~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~a 144 (238)
T cd00807 80 LYEYAEQLI--------KKGKAYVH--HRTG-D----KWCIYPTYDFAHPIVDSIEGITHSLCTLEFEDRRPSYYWLCDA 144 (238)
T ss_pred HHHHHHHHH--------HcCCeecC--CCCC-C----CEEEEeccccceEeeccccCCCeEEechhhhcCCHHHHHHHHH
Confidence 221111111 00111110 0001 1 112344444 4444557899999999998887777777777
Q ss_pred hhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 240 VNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 240 ~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
++ +..|..+.. ..+ +. +| .|+||++.
T Consensus 145 Lg------------------~~~P~~~~~---~hl-n~-~g-~kLSKR~~ 170 (238)
T cd00807 145 LR------------------LYRPHQWEF---SRL-NL-TY-TVMSKRKL 170 (238)
T ss_pred cC------------------CCCCceeEE---EEE-CC-CC-CCccCcCc
Confidence 76 234642211 122 33 66 79999974
No 44
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=98.64 E-value=5.1e-08 Score=98.15 Aligned_cols=88 Identities=24% Similarity=0.205 Sum_probs=66.0
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchhh
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRAH 163 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~~ 163 (318)
.|||.+||||+..++.+|+..+. |.++++.|.|. |. ....+..+.+.+++.++|+++| +.|+||+..+.
T Consensus 10 SPTG~lHiG~artAL~n~l~Ar~~gG~fiLRIEDT-------D~~Rs~~~~~~~I~e~L~wLGI~~D--e~y~QSer~~~ 80 (445)
T PRK12558 10 SPTGYLHVGNARTALLNWLYARKHGGKFILRIDDT-------DLERSKQEYADAIAEDLKWLGINWD--RTFRQSDRFDR 80 (445)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeccC-------CcccchHHHHHHHHHHHHHcCCCCC--ccccHHHHHHH
Confidence 57799999999999999987755 78999999998 43 3345567788889999999999 47999985431
Q ss_pred -hHHHH-------HHhccCCHHHHhch
Q 021028 164 -VELMW-------LLSSATPIGWLNKM 182 (318)
Q Consensus 164 -~el~w-------~L~~~~tv~~L~r~ 182 (318)
.+..- .+.|+||-.+|+.+
T Consensus 81 y~~~~e~L~e~G~AY~C~Ct~eel~~~ 107 (445)
T PRK12558 81 YDEAAEKLKAAGRLYPCYETPEELELK 107 (445)
T ss_pred HHHHHHHHHHCCCEEEecCchHHHHHH
Confidence 11111 15589998887543
No 45
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.64 E-value=2.2e-07 Score=95.99 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=114.1
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.+...+=.|||.+||||+..++.+|...+. +.++++.|-|.-.-+ .....+..+.+.+++.++|++++ ++++
T Consensus 101 ~V~tRFaPsPtG~LHIGharaalln~~~Ar~~~G~~iLRidDTDpk~----~R~~~e~~~~I~edL~wLGl~wD--~~~~ 174 (567)
T PRK04156 101 KVVMRFAPNPSGPLHLGHARAAILNDEYAKMYGGKFILRFEDTDPRT----KRPDPEAYDMILEDLKWLGVKWD--EVVI 174 (567)
T ss_pred eEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeEccCCCCc----ccchHHHHHHHHHHHHHcCCCCC--CccC
Confidence 3555666677799999999999988876654 778899999982211 12344556788899999999998 5799
Q ss_pred cCCchhh-hHHHH-H------HhccCCHHHHhchhh------------------hHHHhh----------hhC-C---CC
Q 021028 157 QSHVRAH-VELMW-L------LSSATPIGWLNKMIQ------------------FKEKSH----------KAG-G---EN 196 (318)
Q Consensus 157 qS~~~~~-~el~w-~------L~~~~tv~~L~r~~~------------------fk~~~~----------~~~-~---~~ 196 (318)
||+..+. .+..- + +.|.|+-.++++... |.++.. +.. + .+
T Consensus 175 qSdr~~~y~~~a~~Li~~G~AY~C~cs~ee~~~~r~~g~~~~~R~~~~ee~l~~~e~m~~G~~~~g~~vlR~k~d~~~~n 254 (567)
T PRK04156 175 QSDRLEIYYEYARKLIEMGGAYVCTCDPEEFKELRDAGKPCPHRDKSPEENLELWEKMLDGEYKEGEAVVRVKTDLEHPN 254 (567)
T ss_pred cccCHHHHHHHHHHHHHcCCCccCCCCHHHHHHHHhcCCCCCCcCCCHHHHHHHHHHhhcCccccCCeEEEEECcccCCC
Confidence 9996432 11111 1 557788776643210 000000 000 0 00
Q ss_pred cc------------------cccchhhHHHhh---hhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCC
Q 021028 197 VG------------------VALLTYPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGR 255 (318)
Q Consensus 197 ~~------------------~g~l~YPlLQaa---Dil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~ 255 (318)
.+ -+-..||.++=| |-...+.++|+-|.|...+-..-..+.+.++
T Consensus 255 ~~~rD~v~~R~~~~~h~~~Gd~~~i~PtY~fA~~VDD~l~GITHViRg~d~~~~t~~Q~~l~~~Lg-------------- 320 (567)
T PRK04156 255 PSVRDWVAFRIVKTPHPRVGDKYRVWPTYNFAVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYDYFG-------------- 320 (567)
T ss_pred CCccccEEEEEcCCCccccCCCeEEEEEeccCceeeecCCCCCeEEcccccccChHHHHHHHHHcC--------------
Confidence 00 011235655433 3333589999999999999888888888876
Q ss_pred CCccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 256 GGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 256 ~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
+..|...+. ++|. + +| .|||||.
T Consensus 321 ----~~~P~~~H~---~~L~-~-~g-~kLSKR~ 343 (567)
T PRK04156 321 ----WEYPETIHY---GRLK-I-EG-FVLSTSK 343 (567)
T ss_pred ----CCCceEEEc---ceec-C-CC-ceeeccc
Confidence 234776665 3453 4 66 6999997
No 46
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.56 E-value=3.9e-07 Score=85.04 Aligned_cols=159 Identities=21% Similarity=0.195 Sum_probs=104.0
Q ss_pred EEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHH---HHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 82 VSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQ---QLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~---~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
=.|-.|||.+||||+..++.+|+..+. +.++++.|.|. |.+ ...+..+.+.+++.++|++++ +++.|
T Consensus 5 RfaPsPtG~lHiG~~rtal~~~l~Ar~~~G~~ilRieDt-------D~~r~~~~~~~~~~i~~dL~wLGl~~d--~~~~q 75 (240)
T cd09287 5 RFAPNPNGPLHLGHARAAILNGEYAKMYGGKFILRFDDT-------DPRTKRPDPEAYDMIPEDLEWLGVKWD--EVVIA 75 (240)
T ss_pred eCCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEeeCcC-------CCCcccchHHHHHHHHHHHHHcCCCCC--Cccch
Confidence 345678899999999999988877654 67888999998 432 345566678999999999998 57999
Q ss_pred CCchh-hhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHh---hhhhcccccEEEecCcchHHHHHH
Q 021028 158 SHVRA-HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMA---SDILLYQSDFVPVGEDQKQHLELT 233 (318)
Q Consensus 158 S~~~~-~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQa---aDil~~~adivpvG~DQ~~hi~l~ 233 (318)
|+..+ +.+..-.|. .+-..|. ....+ +. ..+||..+= .|=...+.+.|.-|.|...+-..-
T Consensus 76 S~r~~~y~~~~~~Li--------~~G~aY~--~~~~~-~~----~~i~ptY~la~vVDD~~~gIThViRg~d~~~~t~~q 140 (240)
T cd09287 76 SDRIELYYEYARKLI--------EMGGAYV--HPRTG-SK----YRVWPTLNFAVAVDDHLLGVTHVLRGKDHIDNTEKQ 140 (240)
T ss_pred hccHHHHHHHHHHHH--------HcCCccc--CcccC-Cc----EEEEEccccceeeeccccCCCeEEechhhhhCCHHH
Confidence 98533 222111111 1111121 01111 11 123454443 344447899999999999988887
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
.-|.+.++ +..|...+. +.+. . +| +||||.+
T Consensus 141 ~~l~~~Lg------------------~~~P~~~H~---pll~-~-~~-~kLSKR~ 171 (240)
T cd09287 141 RYIYEYFG------------------WEYPETIHW---GRLK-I-EG-GKLSTSK 171 (240)
T ss_pred HHHHHHcC------------------CCCCcEEee---eeec-C-CC-Ceecccc
Confidence 88888876 334766655 3343 2 45 8999997
No 47
>PLN02907 glutamate-tRNA ligase
Probab=98.51 E-value=4.8e-07 Score=96.08 Aligned_cols=153 Identities=14% Similarity=0.131 Sum_probs=99.3
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+=| +|||.+||||...++.+|...+. +.++++.+-|. |+ ....+..+.+.+++.++|+++++ ++
T Consensus 213 ~v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLR~eDT-------dp~r~~~e~~~~I~~dl~wLG~~~d~--~~ 283 (722)
T PLN02907 213 KVCTRFPPEPSGYLHIGHAKAALLNQYFARRYKGKLIVRFDDT-------NPSKESDEFVENILKDIETLGIKYDA--VT 283 (722)
T ss_pred ceEEeeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCcCChHHHHHHHHHHHHcCCCCCC--cc
Confidence 466666 56699999999999999977655 78899999998 44 34456777888999999999984 68
Q ss_pred EcCCchhh-hHHHHH-------HhccCCHHHHhchh-----------h-------hHHHhh-hh-C------------CC
Q 021028 156 VQSHVRAH-VELMWL-------LSSATPIGWLNKMI-----------Q-------FKEKSH-KA-G------------GE 195 (318)
Q Consensus 156 ~qS~~~~~-~el~w~-------L~~~~tv~~L~r~~-----------~-------fk~~~~-~~-~------------~~ 195 (318)
+||++.+. .+..-. +.|.++..+++... + |.+|.. .. + ..
T Consensus 284 ~qS~r~~~y~~~a~~Li~~G~aY~~~~~~~~~~~~~~~~~~~~~R~~~~ee~~~~~~~m~~g~~~~~~~~lR~k~d~~~~ 363 (722)
T PLN02907 284 YTSDYFPQLMEMAEKLIKEGKAYVDDTPREQMRKERMDGIESKCRNNSVEENLRLWKEMIAGSERGLQCCVRGKLDMQDP 363 (722)
T ss_pred cccccHHHHHHHHHHHHHcCCeeecCCCHHHHHHHHhcCCCCCccCCCHHHHHHHHHHHhcccccCCCeEEEEEcccCCC
Confidence 99996432 221111 44778877664321 1 111100 00 0 00
Q ss_pred Ccccccc------------------hhhHHHhhhhhc---ccccEEEecCcchHHHHHHHHHHHHhh
Q 021028 196 NVGVALL------------------TYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 196 ~~~~g~l------------------~YPlLQaaDil~---~~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
+.++... .||..+=|-.+. .+.++|+-|.|...+-..-.-|.+.++
T Consensus 364 n~~~~D~v~~R~~~~~h~~~gd~~~~~PtY~fa~~vdD~~~gIThvlRg~e~~~~t~~q~~l~~~lg 430 (722)
T PLN02907 364 NKSLRDPVYYRCNPTPHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILEDMG 430 (722)
T ss_pred CCCcccCEEEEecCCcccccCCccceeeccCCceEEEcccCCCceEeecHhhhhChHHHHHHHHHcC
Confidence 1111111 156555444433 479999999999998888888888876
No 48
>PLN02859 glutamine-tRNA ligase
Probab=98.45 E-value=4.8e-07 Score=96.09 Aligned_cols=177 Identities=11% Similarity=0.083 Sum_probs=113.3
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+=| +|||.+||||...++.+|...+. +..+++.+-|. |+ ....++...+.+++.++|++|+ .++
T Consensus 264 ~V~tRFaPsPtG~LHiGharaallN~~~Ar~~~G~~~LRieDT-------dp~r~~~e~~~~I~edL~WLG~~~d--~~~ 334 (788)
T PLN02859 264 KVYTRFPPEPNGYLHIGHAKAMFVDFGLAKERGGCCYLRFDDT-------NPEAEKKEYIDHIEEIVEWMGWEPF--KIT 334 (788)
T ss_pred ceEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEecCC-------CCCccchHHHHHHHHHHHHcCCCCC--Ccc
Confidence 355555 56799999999999999977755 78899999998 54 3455677888899999999998 478
Q ss_pred EcCCchh-hhHHHHH-------HhccCCHHHHhchhh------------------hHHHhhh-h--C-----------CC
Q 021028 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMIQ------------------FKEKSHK-A--G-----------GE 195 (318)
Q Consensus 156 ~qS~~~~-~~el~w~-------L~~~~tv~~L~r~~~------------------fk~~~~~-~--~-----------~~ 195 (318)
+||++.+ +.+.+-. +.|+++-.+|+.... |.++..- . | ..
T Consensus 335 ~qSd~f~~~Y~~A~~Li~~G~AY~C~ct~eei~~~R~~~~~sp~Rd~s~eenl~lfe~m~~g~~~~G~~vlR~Kid~~~~ 414 (788)
T PLN02859 335 YTSDYFQELYELAVELIRRGHAYVDHQTPEEIKEYREKKMNSPWRDRPIEESLKLFEDMRRGLIEEGKATLRMKQDMQND 414 (788)
T ss_pred cccHhHHHHHHHHHHHHHcCCeEeccCCHHHHHHHHhhhccCCCCCCChHHhhhhhHHHHhchhccCCeEEEEeccCCCC
Confidence 9998752 2222211 458888887643211 1111100 0 0 00
Q ss_pred Ccc-----cc-------------cchhhHHHhhhhhc---ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 021028 196 NVG-----VA-------------LLTYPVLMASDILL---YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (318)
Q Consensus 196 ~~~-----~g-------------~l~YPlLQaaDil~---~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~ 254 (318)
+.. .+ -.+||..-=|..+. .+.++++.|.|...+-..-.-|.+.++
T Consensus 415 n~~~rD~V~~RI~~~~h~rtgdk~~iyPtYdFA~~vdD~legITHvLRg~E~~~~~~~y~wl~~aLg------------- 481 (788)
T PLN02859 415 NFNMYDLIAYRIKFTPHPHAGDKWCIYPSYDYAHCIVDSLENITHSLCTLEFETRRASYYWLLDSLG------------- 481 (788)
T ss_pred CceeeeceeEEEeccCCCccCCCeEEEecccccccccccccCCceEeechhhhcCCHHHHHHHHHcC-------------
Confidence 000 00 12355544333332 479999999999888877777777776
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 255 ~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
+..|..... + ..++ +| .||||+..
T Consensus 482 -----~~~P~~~~f---~-rLn~-~~-t~LSKRkl 505 (788)
T PLN02859 482 -----LYQPYVWEY---S-RLNV-TN-TVMSKRKL 505 (788)
T ss_pred -----CCCCcEEee---e-eECC-CC-CcccCcCc
Confidence 234655544 3 3355 66 79999973
No 49
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=98.11 E-value=6.7e-06 Score=84.76 Aligned_cols=94 Identities=13% Similarity=0.042 Sum_probs=69.4
Q ss_pred EEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 81 IVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 81 i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.+=| .|||.|||||+..++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++||+++. .+++
T Consensus 30 v~tRFaPsPtG~LHiG~ar~al~n~~~Ar~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLGi~~d~-~~~~ 101 (554)
T PRK05347 30 VHTRFPPEPNGYLHIGHAKSICLNFGLAQDYGGKCNLRFDDT-------NPEKEDQEYVDSIKEDVRWLGFDWSG-ELRY 101 (554)
T ss_pred eEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Ccee
Confidence 45555 56799999999999999977765 78899999998 44 34556778889999999999953 4799
Q ss_pred cCCchh-hhHHHHH-------HhccCCHHHHhch
Q 021028 157 QSHVRA-HVELMWL-------LSSATPIGWLNKM 182 (318)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~tv~~L~r~ 182 (318)
||+..+ +.+.+.. +.|.|+-.+|++.
T Consensus 102 qS~r~~~~y~~a~~Li~~G~AY~c~cs~eei~~~ 135 (554)
T PRK05347 102 ASDYFDQLYEYAVELIKKGKAYVDDLSAEEIREY 135 (554)
T ss_pred eecCHHHHHHHHHHHHHcCCEeeCCCCHHHHHHH
Confidence 998643 3332222 4588988876433
No 50
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=98.08 E-value=8.5e-06 Score=83.63 Aligned_cols=89 Identities=9% Similarity=-0.030 Sum_probs=66.4
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh-
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA- 162 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~- 162 (318)
.|||.+||||+..++.+|...+. +.++++.|-|. |+ ....+..+.+.+++.++|++++. .+++||+..+
T Consensus 8 sPtG~LHiG~ar~al~n~~~A~~~~G~~iLRieDT-------d~~r~~~e~~~~I~~dL~wLG~~~d~-~~~~qS~~~~~ 79 (522)
T TIGR00440 8 EPNGYLHIGHAKSICLNFGYAKYYNGTCNLRFDDT-------NPVKEDPEYVESIKRDVEWLGFKWEG-KIRYSSDYFDE 79 (522)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhCCEEEEEEcCC-------CcccCChHHHHHHHHHHHHcCCCCCC-CceEccccHHH
Confidence 58899999999999999977755 78899999998 44 34556778889999999999953 4788998643
Q ss_pred hhHHHHH-------HhccCCHHHHhch
Q 021028 163 HVELMWL-------LSSATPIGWLNKM 182 (318)
Q Consensus 163 ~~el~w~-------L~~~~tv~~L~r~ 182 (318)
+.+..-. +.|.|+-.+|++.
T Consensus 80 ~~~~a~~Li~~G~AY~c~cs~eel~~~ 106 (522)
T TIGR00440 80 LYRYAEELIKKGLAYVDELTPEEIREY 106 (522)
T ss_pred HHHHHHHHHHcCCEEeecCCHHHHHHh
Confidence 2221111 5588988876543
No 51
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=98.02 E-value=9.2e-06 Score=83.89 Aligned_cols=93 Identities=13% Similarity=0.044 Sum_probs=68.7
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.|=| .|||.|||||+..++.+|...+. +..+++.|-|. |+ ....+..+.+.+++.++||++++ ++
T Consensus 51 kv~tRFaPsPtG~LHiGharaalln~~~Ar~~gG~~iLRiEDT-------Dp~r~~~e~~~~I~~dL~wLGi~~D~--~~ 121 (574)
T PTZ00437 51 KPYFRFPPEPNGFLHIGHAKSMNLNFGSARAHGGKCYLRYDDT-------NPETEEQVYIDAIMEMVKWMGWKPDW--VT 121 (574)
T ss_pred cEEEEeCCCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEECCC-------CccccChHHHHHHHHHHHHcCCCCCC--CC
Confidence 355555 56699999999999989977755 78899999998 54 34556778889999999999984 67
Q ss_pred EcCCchh-hhHHHH-H------HhccCCHHHHhc
Q 021028 156 VQSHVRA-HVELMW-L------LSSATPIGWLNK 181 (318)
Q Consensus 156 ~qS~~~~-~~el~w-~------L~~~~tv~~L~r 181 (318)
+||++.+ +.+..- + +.|.|+-.+|+.
T Consensus 122 ~qS~y~~~~ye~A~~Li~~G~AY~C~cs~eei~~ 155 (574)
T PTZ00437 122 FSSDYFDQLHEFAVQLIKDGKAYVDHSTPDELKQ 155 (574)
T ss_pred cCchhHHHHHHHHHHHHHcCCEEEcCCCHHHHHH
Confidence 8998754 222111 1 458888887653
No 52
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=98.02 E-value=1.3e-05 Score=85.73 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=69.4
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.|=| .|||.+||||...++.+|...+. +.++++.+-|. |+ ....+..+.+.+++.++|++++. .++
T Consensus 31 ~v~tRFaPsPtG~lHiGhar~alln~~~A~~~~G~~~LR~eDT-------d~~r~~~e~~~~I~~dl~wLG~~wd~-~~~ 102 (771)
T PRK14703 31 RVVTRFPPEPNGYLHIGHAKSILLNFGIARDYGGRCHLRMDDT-------NPETEDTEYVEAIKDDVRWLGFDWGE-HLY 102 (771)
T ss_pred ceEEEeCcCCCCcccHHHHHHHHHHHHHHHHhCCEEEEEeCCC-------CCCcCChHHHHHHHHHHHHcCCCCCC-Cce
Confidence 355666 56699999999999989877655 78899999998 44 34556778889999999999874 479
Q ss_pred EcCCchh-hhHHH-HH------HhccCCHHHHhch
Q 021028 156 VQSHVRA-HVELM-WL------LSSATPIGWLNKM 182 (318)
Q Consensus 156 ~qS~~~~-~~el~-w~------L~~~~tv~~L~r~ 182 (318)
+||++.+ +.+.. .+ +.|+|+-.++.+.
T Consensus 103 ~qS~~~~~y~~~a~~Li~~G~aY~c~cs~eei~~~ 137 (771)
T PRK14703 103 YASDYFERMYAYAEQLIKMGLAYVDSVSEEEIREL 137 (771)
T ss_pred EeecCHHHHHHHHHHHHHcCCcccCcCCHHHHHHH
Confidence 9999643 21111 11 5588888876543
No 53
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=97.96 E-value=4.7e-05 Score=78.29 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=53.3
Q ss_pred CceEEEeeCCCCccchhhHHHHHH--HHHHHh-c-cCcE-EEEEeccce---------------ecC-C----CCH----
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIK--NWIALQ-N-SYET-LFFIVDLHA---------------ITL-P----YDT---- 128 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~--~~~~LQ-~-g~~v-~ilIaD~hA---------------~t~-~----~d~---- 128 (318)
+..+-||+-|||.+||||+...+. -+.+.. . |.++ +|+..|.|- +++ | -|+
T Consensus 19 ~~~~~tg~~psG~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g~~ 98 (515)
T TIGR00467 19 LYTVASGITPSGHIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEGCK 98 (515)
T ss_pred eEEEecCCCCCCCccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCCCc
Confidence 678999999999999999887653 233333 2 7776 588999981 111 1 121
Q ss_pred -HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch
Q 021028 129 -QQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (318)
Q Consensus 129 -~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~ 161 (318)
.-.+.+-....+.+..+||+ .+|+.+++.+
T Consensus 99 ~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y 129 (515)
T TIGR00467 99 TSYAEHFLIPFLESLPVLGIN---PEFIRASKQY 129 (515)
T ss_pred HHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhh
Confidence 12223344556666678996 5788888864
No 54
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=97.95 E-value=2e-05 Score=81.64 Aligned_cols=93 Identities=17% Similarity=0.137 Sum_probs=68.4
Q ss_pred ceEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 79 KRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
-.+.+=| .|||.+||||...++.+|...+. +.++++.+-|. |+ ....+....+.+++.++|++|+ ++
T Consensus 92 ~~vvtRFaPsPtG~LHiGharaalln~~~Ar~~~G~~iLRidDT-------Dp~R~~~e~~~~I~edL~wLGi~~d--~~ 162 (560)
T TIGR00463 92 GEVVMRFAPNPSGPLHIGHARAAILNQYFAKKYKGKLIIRFDDT-------DPRRVKPEAYDMILEDLDWLGVKGD--EV 162 (560)
T ss_pred CeeEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCEEEEEeCcC-------CcccccHHHHHHHHHHHHHcCCCCC--cc
Confidence 3466666 55599999999999988876654 77889999998 43 3445577888999999999998 57
Q ss_pred EEcCCchhh-hHHHHH-------HhccCCHHHHh
Q 021028 155 FVQSHVRAH-VELMWL-------LSSATPIGWLN 180 (318)
Q Consensus 155 ~~qS~~~~~-~el~w~-------L~~~~tv~~L~ 180 (318)
++||+..+. .+..-. +.|.|+-.++.
T Consensus 163 ~~qSd~~~~y~~~a~~Li~~G~AY~C~cs~eei~ 196 (560)
T TIGR00463 163 VYQSDRIEEYYDYCRKLIEMGKAYVCDCPPEEFR 196 (560)
T ss_pred ccccccHHHHHHHHHHHHHcCCceeecCCHHHHH
Confidence 999996432 211111 55888888775
No 55
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=97.94 E-value=3.3e-05 Score=62.52 Aligned_cols=54 Identities=17% Similarity=0.175 Sum_probs=39.7
Q ss_pred EEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHH
Q 021028 81 IVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRET 138 (318)
Q Consensus 81 i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~ 138 (318)
+++|-.+ +.+|+||+.. ++.+.++++ ++++.++|.++...+.+...++++.+..
T Consensus 2 ~~~~G~F-dp~H~GH~~l-~~~a~~~~d--~~i~~i~~~~~~~~~~~~~~~~~R~~~l 55 (105)
T cd02156 2 ARFPGEP-GYLHIGHAKL-ICRAKGIAD--QCVVRIDDNPPVKVWQDPHELEERKESI 55 (105)
T ss_pred EEeCCCC-CCCCHHHHHH-HHHHHHhCC--cEEEEEcCCCcccccCChHHHHHHHHHH
Confidence 5677777 8999999987 678877763 6899999999887544555555554433
No 56
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.87 E-value=0.00012 Score=75.05 Aligned_cols=191 Identities=17% Similarity=0.180 Sum_probs=100.4
Q ss_pred EEEeeCCCCccchhhHHHHHH--HHHHHhc--cCcEE--EEEeccceecCC------CCHHHH-HHHHHHHHHHHHHcCC
Q 021028 81 IVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETL--FFIVDLHAITLP------YDTQQL-SKATRETAAIYLACGI 147 (318)
Q Consensus 81 i~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~--ilIaD~hA~t~~------~d~~~i-~~~~~~~~~~llA~Gi 147 (318)
-|+|--|+|.+||||...++. -+.++.+ |++|. .-+.|+-..+.. ..++.+ +.....+.++|..+|+
T Consensus 116 e~~spnp~g~lHiGH~R~~iigD~laR~lr~~G~~V~~~~~i~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~l~~LgI 195 (507)
T PRK01611 116 EYVSANPTGPLHVGHLRSAVIGDALARILEFAGYDVTREYYVNDAGTQIGMLIASLELLWRKAVDISLDEIKEDLDRLGV 195 (507)
T ss_pred EecCCCCCCCCcCCchHHHHHHHHHHHHHHHcCCcEEEEeeeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345778889999999987652 3444432 77764 456777433320 123333 3455678888999999
Q ss_pred CCCceEEEEcCCchhhhHHHHHHhccCCHHHHhch-hhh-HHH------hhhhCCC-Cc----ccccchhhHHHhhhhhc
Q 021028 148 DNSKASVFVQSHVRAHVELMWLLSSATPIGWLNKM-IQF-KEK------SHKAGGE-NV----GVALLTYPVLMASDILL 214 (318)
Q Consensus 148 Dpek~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~-~~f-k~~------~~~~~~~-~~----~~g~l~YPlLQaaDil~ 214 (318)
..+ .+++.|+........+.+. +|... .-| ... ...++++ +. +=|..+|- +.||-.
T Consensus 196 ~~D--~~~~es~~~~~~~~~~~~~------~L~~~G~~y~~~~Ga~~~~~~~~~~~~~~vl~ksdG~~~Y~---t~Dia~ 264 (507)
T PRK01611 196 HFD--VWFSESELYYNGKVDEVVE------DLKEKGLLYVESDGALWVRLTEFGDDKDRVLIKSDGTYTYF---TRDIAY 264 (507)
T ss_pred eee--EEeecCcchhcchHHHHHH------HHHHCCCEEEeeCCcEEEEchhhCCCCCeEEEECCCCccch---HHHHHH
Confidence 876 3455555321111111111 11111 001 000 0011100 00 12445553 335444
Q ss_pred c-------cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCC
Q 021028 215 Y-------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKS 287 (318)
Q Consensus 215 ~-------~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS 287 (318)
. +--|-.+|.||..|+.-...+++.++.... ..-..++... .++ ...+| +|||||
T Consensus 265 ~~~k~~~~d~~i~V~g~~q~~hf~~~~~~~~~lg~~~~---------------~~~~~~h~~~-glv-~~~~g-~KMSkR 326 (507)
T PRK01611 265 HLYKFERFDRVIYVVGADHHGHFKRLKAALKALGYDPD---------------ALEVLLHQMV-GLV-RGGEG-VKMSTR 326 (507)
T ss_pred HHHHHhhcCEEEEEECCChHHHHHHHHHHHHHcCCCcc---------------cceEEEEEEE-Eee-ECCCC-CcccCC
Confidence 2 345559999999999999999999873200 0000122111 122 22245 799999
Q ss_pred CCCCCCeEeccCCHHH
Q 021028 288 APSDQSRINLLDPKDV 303 (318)
Q Consensus 288 ~p~~~s~I~L~D~pe~ 303 (318)
. ++.|.+.|=-++
T Consensus 327 ~---Gn~i~l~dll~~ 339 (507)
T PRK01611 327 A---GNVVTLDDLLDE 339 (507)
T ss_pred C---CceeEHHHHHHH
Confidence 8 689988765554
No 57
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=97.83 E-value=6.7e-05 Score=68.29 Aligned_cols=155 Identities=16% Similarity=0.174 Sum_probs=79.3
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHHhc--cCcEEE-EEe-ccceecCC-----CCHHHH-HHHHHHHHHHHHHcCCCC
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIV-DLHAITLP-----YDTQQL-SKATRETAAIYLACGIDN 149 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~i-lIa-D~hA~t~~-----~d~~~i-~~~~~~~~~~llA~GiDp 149 (318)
|++--|+|.+||||....+ .-+.++.+ |++|+. ... |+=-.+.. ..++++ ......+.+++.++|+.+
T Consensus 6 ~~spN~~~~~HiGH~R~~vigD~l~R~l~~~G~~V~~~~~~~D~G~qi~~~a~~~~~~~~~~~~~~~~~~~~~~~L~i~~ 85 (212)
T cd00671 6 FVSANPTGPLHVGHLRNAIIGDSLARILEFLGYDVTREYYINDWGRQIGLLILSLEKWRKLVEESIKADLETYGRLDVRF 85 (212)
T ss_pred ecCCCCCCCccccccHHHHHHHHHHHHHHHCCCcEEEEeccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcC
Confidence 5566789999999988755 22333332 788753 333 44221210 113233 334567788888999987
Q ss_pred CceEEEEcCCchhhhHHHHH-Hhc--cCCHHHHhchhhhHHHhhhhC-CCCc----ccccchhhH---HHhhhhhccccc
Q 021028 150 SKASVFVQSHVRAHVELMWL-LSS--ATPIGWLNKMIQFKEKSHKAG-GENV----GVALLTYPV---LMASDILLYQSD 218 (318)
Q Consensus 150 ek~~i~~qS~~~~~~el~w~-L~~--~~tv~~L~r~~~fk~~~~~~~-~~~~----~~g~l~YPl---LQaaDil~~~ad 218 (318)
+ .++..|++.......|. |.. +.... .-..-|. . ..+. ..+. +=|..+|.. -.+.|=+.+++|
T Consensus 86 d--~~~~es~~~~~~~~~i~~L~~~g~~~~~--~g~~~~~-~-~~~~~~~d~vl~rsdG~~~Y~~~DlA~~~~~~~~~~~ 159 (212)
T cd00671 86 D--VWFGESSYLGLMGKVVELLEELGLLYEE--DGALWLD-L-TEFGDDKDRVLVRSDGTYTYFTRDIAYHLDKFERGAD 159 (212)
T ss_pred c--eecchhhhhhHHHHHHHHHHHCCCEEEe--CCcEEEe-c-hhhCCCCCeEEEECCCCccchHHHHHHHHHHHhcCCC
Confidence 5 35566654222122221 110 00000 0000000 0 0000 0010 124555652 222222225788
Q ss_pred EE--EecCcchHHHHHHHHHHHHhhh
Q 021028 219 FV--PVGEDQKQHLELTRELAERVNY 242 (318)
Q Consensus 219 iv--pvG~DQ~~hi~l~Rdia~k~n~ 242 (318)
.+ .+|.||..|+.-.+.+++.++.
T Consensus 160 ~~i~v~g~~~~~~~~~~~~~~~~lg~ 185 (212)
T cd00671 160 KIIYVVGADHHGHFKRLFAALELLGY 185 (212)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHcCC
Confidence 87 9999999999999999999873
No 58
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.81 E-value=5.2e-05 Score=74.57 Aligned_cols=82 Identities=20% Similarity=0.262 Sum_probs=42.4
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHH---HHHHhc-cCcE-EEEEeccceecC--CC-------------------CHH-
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKN---WIALQN-SYET-LFFIVDLHAITL--PY-------------------DTQ- 129 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~---~~~LQ~-g~~v-~ilIaD~hA~t~--~~-------------------d~~- 129 (318)
.+..+-+|+.|||.+||||+.-++.. ...|++ |.++ +|+.+|..--+. |. ||.
T Consensus 23 ~~~v~~sG~sPSG~~HIGn~rEv~~~~~V~~al~~~g~~~r~i~~~DD~D~lRKvP~~~p~~~~~~ylg~Plt~VPdP~G 102 (360)
T PF01921_consen 23 EPYVFASGISPSGLPHIGNFREVLRADMVARALRDRGKDVRLIYFSDDMDPLRKVPPNVPNPELEKYLGKPLTRVPDPFG 102 (360)
T ss_dssp SEEEEEEEE--SS---HHHHHHHHHHHHHHHHHHTTT-EEEEEEEE-TTSB-----TTS-CC-CCCCTTSBTTTSB-TTS
T ss_pred ccEEEecCCCCCCCcccccccchhhHHHHHHHHHHcCCCEEEEEEeecCCcccCCCCCCChHHHHHhcCCccccCCCCCC
Confidence 46789999999999999998765532 334555 6665 567777644332 11 110
Q ss_pred H----HHHHHHHHHHHHHHcCCCCCceEEEEcCCch
Q 021028 130 Q----LSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (318)
Q Consensus 130 ~----i~~~~~~~~~~llA~GiDpek~~i~~qS~~~ 161 (318)
. .+.+...+.+.+..+||++ +++.|++.+
T Consensus 103 ~~~SyaeH~~~~~~~~L~~~gie~---e~~s~te~Y 135 (360)
T PF01921_consen 103 CHESYAEHFNAPFEEFLDEFGIEY---EFISQTEMY 135 (360)
T ss_dssp SSSCHHHHHHHHHHHHHHTTT------EEEECCCCC
T ss_pred CCccHHHHHHHHHHHHHHHcCCce---EEEeHHHhh
Confidence 1 2223344555566679964 799999864
No 59
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=5e-05 Score=77.27 Aligned_cols=82 Identities=23% Similarity=0.365 Sum_probs=53.5
Q ss_pred CCceEEEeeCCCCccchhhHHHHHH---HHHHHhc-cCcE-EEEEeccceecC--CC---CHHHHHHH------------
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIK---NWIALQN-SYET-LFFIVDLHAITL--PY---DTQQLSKA------------ 134 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~---~~~~LQ~-g~~v-~ilIaD~hA~t~--~~---d~~~i~~~------------ 134 (318)
...++-||+-|||.+||||+.=.+. -...|.+ |+++ +|.++|.+--+. +. +++..+++
T Consensus 19 ~~~~v~tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP~ 98 (521)
T COG1384 19 DEYVVATGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDPF 98 (521)
T ss_pred CcEEEecCcCCCCCcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCCc
Confidence 5679999999999999999874332 1233433 7776 688999877664 21 22333332
Q ss_pred ------H----HHHHHHHHHcCCCCCceEEEEcCCch
Q 021028 135 ------T----RETAAIYLACGIDNSKASVFVQSHVR 161 (318)
Q Consensus 135 ------~----~~~~~~llA~GiDpek~~i~~qS~~~ 161 (318)
+ +.+.+.+.-+||++ +++.+|+.+
T Consensus 99 G~~~Sya~hf~~~f~~~l~~~Gi~~---E~~s~se~Y 132 (521)
T COG1384 99 GCCDSYAEHFLRPFEEFLDEFGIEV---EFVSATELY 132 (521)
T ss_pred cccchHHHHHHHHHHHHHHhcCCce---EEEEhHHhh
Confidence 2 33444455679874 689888854
No 60
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=97.67 E-value=0.00047 Score=66.05 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=37.7
Q ss_pred CCCCccchhhHHHHH-----HHHHHHhccCcEE-EEEeccceecC-----C--C-------------CH-HHHHHHHHHH
Q 021028 86 QPTGSIHLGNYLGAI-----KNWIALQNSYETL-FFIVDLHAITL-----P--Y-------------DT-QQLSKATRET 138 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l-----~~~~~LQ~g~~v~-ilIaD~hA~t~-----~--~-------------d~-~~i~~~~~~~ 138 (318)
-|+|.+||||+.+.+ .+++++ .|++|. +.-.|.|..-. . . .. +-.+++...+
T Consensus 10 ~~~g~~HiGH~~~~i~~D~i~R~~r~-~G~~v~~~~g~D~~g~~i~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (312)
T cd00668 10 YANGSLHLGHALTHIIADFIARYKRM-RGYEVPFLPGWDTHGLPIELKAERKGGRKKKTIWIEEFREDPKEFVEEMSGEH 88 (312)
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHh-CCCCCCCCCccCCCCHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHH
Confidence 367999999998744 233332 277774 44456665421 0 0 11 2233445667
Q ss_pred HHHHHHcCCCCC
Q 021028 139 AAIYLACGIDNS 150 (318)
Q Consensus 139 ~~~llA~GiDpe 150 (318)
.+++.++|+..+
T Consensus 89 ~~~l~~lgI~~D 100 (312)
T cd00668 89 KEDFRRLGISYD 100 (312)
T ss_pred HHHHHHhCcccc
Confidence 778888998554
No 61
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=97.57 E-value=0.00069 Score=68.81 Aligned_cols=75 Identities=8% Similarity=-0.038 Sum_probs=48.4
Q ss_pred CCCceEE-EeeCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHH-HHHHHHHHHHH
Q 021028 76 SVKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAI 141 (318)
Q Consensus 76 ~~~~~i~-tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~-t-~-----~~d~~~-i~~~~~~~~~~ 141 (318)
+..+++| +|--|.|.+||||..+.+. -+.+.++ |++|++..+ |.|.- + . ..++++ .+.+.+.+.++
T Consensus 21 ~~~v~~yvcgPtvy~~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~ 100 (463)
T PRK00260 21 PGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHED 100 (463)
T ss_pred CCcceEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455666 8888889999999876552 3444433 788887666 44321 1 0 124433 45567788899
Q ss_pred HHHcCC-CCC
Q 021028 142 YLACGI-DNS 150 (318)
Q Consensus 142 llA~Gi-Dpe 150 (318)
+.++|| .|+
T Consensus 101 ~~~Lgi~~~d 110 (463)
T PRK00260 101 MDALNVLPPD 110 (463)
T ss_pred HHHcCCCCCC
Confidence 999999 444
No 62
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.53 E-value=0.0013 Score=60.44 Aligned_cols=71 Identities=11% Similarity=-0.032 Sum_probs=43.2
Q ss_pred ceEEEeeCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHHHc
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYLAC 145 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~llA~ 145 (318)
....+|-=|-|.+||||....+. -+.+.++ |++|++..+ |.|..=. ..++ +-.+++...+.+++.++
T Consensus 22 ~~y~~gpt~y~~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~~~~l 101 (213)
T cd00672 22 TMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFEDMKAL 101 (213)
T ss_pred eEEEeCCccCCCcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHc
Confidence 34445666679999999776542 2333333 778765544 4443210 1244 34455677888888889
Q ss_pred CCCC
Q 021028 146 GIDN 149 (318)
Q Consensus 146 GiDp 149 (318)
||.+
T Consensus 102 ~i~~ 105 (213)
T cd00672 102 NVLP 105 (213)
T ss_pred CCCC
Confidence 9876
No 63
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=97.50 E-value=0.00038 Score=67.08 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=40.4
Q ss_pred CCCCccchhhHHHHHH--HHHHHh--ccCcEE-EEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCC
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQ--NSYETL-FFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ--~g~~v~-ilIaD~hA~t~-------~~d~~-~i~~~~~~~~~~llA~GiDpe 150 (318)
-|+|.+||||..+.+. -+.+++ .|++|. +.-.|.|..-. ..++. -.+++...+.+++.++|+.++
T Consensus 10 y~ng~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 10 YPSGALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 3679999999887552 233333 278875 45555553211 12443 345567788888899998765
No 64
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=96.95 E-value=0.0011 Score=66.32 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=68.0
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE---
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS--- 153 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~--- 153 (318)
+|+-.-=-|||.+|||-+..++.|++...+ |.++++.|.|. |. ..+....+.+..++.++||+||..-
T Consensus 34 VRvRFAPSPTGfLHlGgLRTALfNYLfArk~gGkFiLRiEDT-------Dq~R~v~gs~e~i~~~L~w~nl~~DEgP~~g 106 (524)
T KOG1149|consen 34 VRVRFAPSPTGFLHLGGLRTALFNYLFARKKGGKFILRIEDT-------DQKRLIRGSEEAIYEDLKWANLDWDEGPGVG 106 (524)
T ss_pred eEEeecCCCCcceehhhHHHHHHHHHHHHhcCCeEEEEeccc-------cccccccchHHHHHHHHHhcCCCcccCCCcC
Confidence 455555567899999999999999987766 88999999998 43 3455566677788999999999754
Q ss_pred ----EEEcCCchhh-hHHHH-H------HhccCCHHHHhc
Q 021028 154 ----VFVQSHVRAH-VELMW-L------LSSATPIGWLNK 181 (318)
Q Consensus 154 ----i~~qS~~~~~-~el~w-~------L~~~~tv~~L~r 181 (318)
=|.||+..+. ..-.. + +.|+|+-.+|..
T Consensus 107 G~~GPY~QS~R~eiY~kyae~Ll~sG~AYrCFCs~~rL~~ 146 (524)
T KOG1149|consen 107 GPFGPYEQSERLEIYKKYAEKLLESGHAYRCFCSEERLDL 146 (524)
T ss_pred CCCCchhhHHHHHHHHHHHHHHHhcCCeeEeccCHHHHHH
Confidence 2778875331 11111 1 447888777543
No 65
>PLN02946 cysteine-tRNA ligase
Probab=96.70 E-value=0.038 Score=57.66 Aligned_cols=74 Identities=12% Similarity=-0.071 Sum_probs=45.2
Q ss_pred CCCCceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEEE-Eeccce--ecC-----CCCHH-HHHHHHHHHH
Q 021028 75 SSVKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHA--ITL-----PYDTQ-QLSKATRETA 139 (318)
Q Consensus 75 ~~~~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~il-IaD~hA--~t~-----~~d~~-~i~~~~~~~~ 139 (318)
.+..+++|+- .|| +.+||||+...+. -+.++.+ |++|.++ -.|.|. ++. ..++. -.++++..+.
T Consensus 77 ~~~~v~~Y~C-GpTvYd~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~ 155 (557)
T PLN02946 77 VEGKVGMYVC-GVTAYDLSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFL 155 (557)
T ss_pred CCCceeEEEe-CCccCCCCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3455677754 677 8899999887552 2333333 7887643 233332 111 12554 4456778888
Q ss_pred HHHHHcCCCC
Q 021028 140 AIYLACGIDN 149 (318)
Q Consensus 140 ~~llA~GiDp 149 (318)
+++.++|+.+
T Consensus 156 ~d~~~LnI~~ 165 (557)
T PLN02946 156 SDMAYLHCLP 165 (557)
T ss_pred HHHHHCCCCC
Confidence 9999999853
No 66
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=96.39 E-value=0.052 Score=55.38 Aligned_cols=71 Identities=11% Similarity=-0.054 Sum_probs=44.7
Q ss_pred eEEEeeCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee-c-C-----CCCHHH-HHHHHHHHHHHHHHcC
Q 021028 80 RIVSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI-T-L-----PYDTQQ-LSKATRETAAIYLACG 146 (318)
Q Consensus 80 ~i~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~-t-~-----~~d~~~-i~~~~~~~~~~llA~G 146 (318)
...+|-=|-|.+||||..+.+. -+.++++ |++|.+..+ |.|.- + . ..++.+ .+.+...+.+++.++|
T Consensus 24 ~yvcgptvy~~~HiGhar~~v~~Dvl~R~lr~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~dl~~Lg 103 (465)
T TIGR00435 24 MYVCGPTVYDYCHIGHARTAIVFDVLRRYLRYLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFEDMKALN 103 (465)
T ss_pred EEEecCccCCCcccccchHHHHHHHHHHHHHHcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4456777779999999887652 2333332 788876554 55422 1 0 124433 4556778888999999
Q ss_pred CCCC
Q 021028 147 IDNS 150 (318)
Q Consensus 147 iDpe 150 (318)
+.++
T Consensus 104 I~~d 107 (465)
T TIGR00435 104 VLPP 107 (465)
T ss_pred CCCC
Confidence 9754
No 67
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=94.66 E-value=0.1 Score=55.59 Aligned_cols=74 Identities=23% Similarity=0.358 Sum_probs=49.9
Q ss_pred CCceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccc-eec--C-----CCCH-HHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH-AIT--L-----PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~h-A~t--~-----~~d~-~~i~~~~~~~~~~l 142 (318)
++..|.+++ -|+|.+||||+.+.+. -+.++++ |++|+++.++.+ ..- . ..++ +-.+++...+.+.+
T Consensus 2 ~~~~itt~~py~ng~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~~ 81 (673)
T PRK00133 2 RKILVTCALPYANGPIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRDF 81 (673)
T ss_pred CCEEEeCCCCCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 355677777 6899999999887552 2334433 788877666554 221 1 1244 44566788889999
Q ss_pred HHcCCCCC
Q 021028 143 LACGIDNS 150 (318)
Q Consensus 143 lA~GiDpe 150 (318)
.++|++++
T Consensus 82 ~~l~i~~d 89 (673)
T PRK00133 82 AGFGISFD 89 (673)
T ss_pred HHhCCCCC
Confidence 99999877
No 68
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.65 E-value=0.11 Score=53.71 Aligned_cols=73 Identities=18% Similarity=0.190 Sum_probs=48.2
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
.+.+-| +|||.+||||.-.++.++-..|+ ..++++..-|. +| .+-.+-...+.+++--+||.|++ +-
T Consensus 200 kVv~RFPPEpSGyLHIGHAKAALLNqYfa~~~~G~LIvRFDDT-------NPaKE~~eFe~~IleDl~~LgIkpd~--~T 270 (712)
T KOG1147|consen 200 KVVTRFPPEPSGYLHIGHAKAALLNQYFAQAYQGKLIVRFDDT-------NPAKENEEFEDVILEDLSLLGIKPDR--VT 270 (712)
T ss_pred ceEEecCCCCCceeehhhHHHHHHHHHHHHhcCceEEEEecCC-------CcchhhHHHHHHHHHHHHHhCcCcce--ee
Confidence 556666 78899999999988877655555 35666665554 33 22222334556677778999995 55
Q ss_pred EcCCch
Q 021028 156 VQSHVR 161 (318)
Q Consensus 156 ~qS~~~ 161 (318)
+-||+.
T Consensus 271 yTSDyF 276 (712)
T KOG1147|consen 271 YTSDYF 276 (712)
T ss_pred echhhH
Confidence 667764
No 69
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=94.59 E-value=0.12 Score=53.91 Aligned_cols=73 Identities=21% Similarity=0.347 Sum_probs=49.9
Q ss_pred CceEEEee-CCCCccchhhHHHHH--HHHHHHhc--cCcEEEE-EeccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFF-IVDLHAITL-------PYDT-QQLSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~il-IaD~hA~t~-------~~d~-~~i~~~~~~~~~~ll 143 (318)
+..|-|.+ -|.|.+||||....+ .-|.++|+ |++|+++ =.|-|..-. ..+| +-+.++.+...++|.
T Consensus 6 ~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~~~ 85 (558)
T COG0143 6 KILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKELFK 85 (558)
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 33444443 578999999988666 34777765 8888654 455565422 2356 445667888999999
Q ss_pred HcCCCCC
Q 021028 144 ACGIDNS 150 (318)
Q Consensus 144 A~GiDpe 150 (318)
+++|+-|
T Consensus 86 ~l~IsfD 92 (558)
T COG0143 86 ALNISFD 92 (558)
T ss_pred HhCCccc
Confidence 9999876
No 70
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=93.38 E-value=0.32 Score=48.60 Aligned_cols=66 Identities=18% Similarity=0.222 Sum_probs=39.9
Q ss_pred CCCCccchhhHHHHHH--HHHHHh--ccCcEE-EEEeccceecC-------CCCHH-HHHHHHHHHHHHHHHcCCCCCc
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQ--NSYETL-FFIVDLHAITL-------PYDTQ-QLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ--~g~~v~-ilIaD~hA~t~-------~~d~~-~i~~~~~~~~~~llA~GiDpek 151 (318)
-|.|.+||||..+.+. -+.+++ .|++++ +.=.|.|..-. ..+++ -+.++...+.+.+.++||+.|.
T Consensus 9 Y~Ng~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D~ 87 (391)
T PF09334_consen 9 YPNGDLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYDR 87 (391)
T ss_dssp ETSSS-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---SE
T ss_pred CCCCCCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 5789999999876552 233333 278875 46668877643 23564 4566788899999999999883
No 71
>PLN02224 methionine-tRNA ligase
Probab=91.88 E-value=0.68 Score=49.06 Aligned_cols=74 Identities=12% Similarity=0.139 Sum_probs=49.3
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEecccee--cC-----CCCH-HHHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI--TL-----PYDT-QQLSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~--t~-----~~d~-~~i~~~~~~~~~~ll 143 (318)
++.|-+++ -|+|.+||||+++.+. -+.++++ |++|++ .=.|.|.. .. ..++ +.+++++..+.+.+.
T Consensus 70 ~~~ittp~pY~NG~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A~~~g~~p~e~~~~~~~~~~~~~~ 149 (616)
T PLN02224 70 TFVLTTPLYYVNAPPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSAAANGRNPPEHCDIISQSYRTLWK 149 (616)
T ss_pred eEEEeCCCCCCCCCCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 45666666 7789999999887552 2334433 788865 44566652 11 1233 556677788888999
Q ss_pred HcCCCCCc
Q 021028 144 ACGIDNSK 151 (318)
Q Consensus 144 A~GiDpek 151 (318)
++||+++.
T Consensus 150 ~l~I~~D~ 157 (616)
T PLN02224 150 DLDIAYDK 157 (616)
T ss_pred HcCCCCCc
Confidence 99999873
No 72
>PLN02610 probable methionyl-tRNA synthetase
Probab=91.11 E-value=1.1 Score=48.85 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=48.4
Q ss_pred CceEEEee-CCCCccchhhHHHH-H--HHHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGA-I--KNWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~-l--~~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~l 142 (318)
+..|-+.+ -|+|.+||||..+. + .-+.++++ |++|+++.+ |-|..-. ..++ +-+.++...+.+.|
T Consensus 18 ~~~ITt~~pY~Ng~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~~~ 97 (801)
T PLN02610 18 NILITSALPYVNNVPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKEVY 97 (801)
T ss_pred CEEEeCCCCCCCCCcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44555554 56799999998853 4 23555554 788876555 4455532 1245 44455677888889
Q ss_pred HHcCCCCCc
Q 021028 143 LACGIDNSK 151 (318)
Q Consensus 143 lA~GiDpek 151 (318)
.++||+.|.
T Consensus 98 ~~l~i~~D~ 106 (801)
T PLN02610 98 DWFDISFDK 106 (801)
T ss_pred HHcCCcccc
Confidence 999999873
No 73
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.64 E-value=0.37 Score=50.46 Aligned_cols=101 Identities=15% Similarity=0.111 Sum_probs=61.2
Q ss_pred CceEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHH-HHHHHHHHHHHHHHcCCCCCceE
Q 021028 78 KKRIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQ-LSKATRETAAIYLACGIDNSKAS 153 (318)
Q Consensus 78 ~~~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~-i~~~~~~~~~~llA~GiDpek~~ 153 (318)
+-.++|-| +|-|.+||||.-.+..++=.... |.-|++..-|. +|++ -+++-..+.++..++|++|-|
T Consensus 246 GGkV~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDT-------NPEkEee~yf~sI~e~V~WLG~~P~k-- 316 (764)
T KOG1148|consen 246 GGKVVTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDT-------NPEKEEEEYFESIKEMVAWLGFEPYK-- 316 (764)
T ss_pred CCeeEEeCCCCCCceeeecchhheeechhhhhhhCCeEEEecCCC-------CcchhhHHHHHHHHHHHHHhCCCcee--
Confidence 45788888 66799999997543234322333 44566666555 4533 333444455555567999964
Q ss_pred EEEcCCchh-hhHHHHH-------HhccCCHHHHhchhhhHH
Q 021028 154 VFVQSHVRA-HVELMWL-------LSSATPIGWLNKMIQFKE 187 (318)
Q Consensus 154 i~~qS~~~~-~~el~w~-------L~~~~tv~~L~r~~~fk~ 187 (318)
|-+.||+.. ..+++.. +.|+++..++.+...+++
T Consensus 317 vTysSDyFdqLy~~av~LIrkG~AYVcHqt~eEik~~rg~~~ 358 (764)
T KOG1148|consen 317 VTYSSDYFDQLYELAVELIRKGKAYVCHQTAEEIKERRGFNE 358 (764)
T ss_pred eecchhHHHHHHHHHHHHHhcCceeEEeccHHHHHhhcCCCC
Confidence 677888642 2333332 448999999885555443
No 74
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=90.60 E-value=1.1 Score=48.94 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=47.3
Q ss_pred CceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 021028 78 KKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~l 142 (318)
++.++.|+ |+ |.+||||.++.+. -+.++|+ |++|.+..+ |.|.+-. ..++ +-..++...+.+++
T Consensus 33 ~~~i~~~p-Py~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~~~~ 111 (805)
T PRK00390 33 KYYVLDMF-PYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMKKQL 111 (805)
T ss_pred CEEEEccC-CCCCCCcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 56777776 66 9999999887552 2445554 788865544 5544321 1133 44566778888999
Q ss_pred HHcCCCCC
Q 021028 143 LACGIDNS 150 (318)
Q Consensus 143 lA~GiDpe 150 (318)
.++|+..|
T Consensus 112 ~~lGi~~D 119 (805)
T PRK00390 112 KSLGFSYD 119 (805)
T ss_pred HHhCCccc
Confidence 99998443
No 75
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=90.30 E-value=0.76 Score=47.56 Aligned_cols=71 Identities=23% Similarity=0.367 Sum_probs=45.3
Q ss_pred eEEEeeCCC--CccchhhHHHH-H-----HHHHHHhccCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 021028 80 RIVSGVQPT--GSIHLGNYLGA-I-----KNWIALQNSYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 80 ~i~tGi~PT--G~lHLGhyvg~-l-----~~~~~LQ~g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~l 142 (318)
.+++.-=|+ |.+||||..+. + .++.+++ |++|++..+ |.|..-. ..++ +-.++++..+.+++
T Consensus 5 ~~i~~~~py~ng~~HiGH~~~~~~~~D~~~R~~r~~-G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~ 83 (556)
T PRK12268 5 ILITSAWPYANGPLHLGHLAGSGLPADVFARYQRLK-GNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDF 83 (556)
T ss_pred EEEecCCCCCCCCccccccccchhHHHHHHHHHHhc-CCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344555555 99999998865 3 2343332 788876544 5553321 1244 44466788889999
Q ss_pred HHcCCCCCc
Q 021028 143 LACGIDNSK 151 (318)
Q Consensus 143 lA~GiDpek 151 (318)
.++|++++.
T Consensus 84 ~~l~i~~d~ 92 (556)
T PRK12268 84 KKLGISYDL 92 (556)
T ss_pred HHcCCcCCC
Confidence 999999873
No 76
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=90.24 E-value=0.57 Score=48.17 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=40.5
Q ss_pred CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCC
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~~~~llA~GiDpe 150 (318)
-|+|.+||||....+. -+.+.++ |++|.+..+ |.|..-. ..++.+ .+.+...+.+++.++|++++
T Consensus 9 ~~ng~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANGKPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3789999999886552 2333333 788865444 4442211 124444 44567788889999999765
No 77
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=89.53 E-value=1.4 Score=44.83 Aligned_cols=66 Identities=15% Similarity=0.285 Sum_probs=41.2
Q ss_pred CCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~-~~i~~~~~~~~~~llA~GiDpek 151 (318)
-|+|.+||||..+.+. -+.+.++ |++|.+ .-.|.|..-. ..++ +-.+.+...+.+++.++||+++.
T Consensus 11 ~~~g~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D~ 89 (511)
T PRK11893 11 YPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYDD 89 (511)
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence 3569999999876552 2334433 788865 4445443211 1234 34455677888899999998773
No 78
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=89.37 E-value=0.98 Score=47.84 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~-~~i~~~~~~~~~~llA~GiDpe 150 (318)
-|+|.+||||+.+.+. -+.++++ |+++++ .=.|.|..-. ..++ +-++++...+.+++.++||+.+
T Consensus 14 y~ng~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~l~~lgI~~D 91 (648)
T PRK12267 14 YPNGKPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKELWKKLDISYD 91 (648)
T ss_pred CCCCCcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 4669999999876552 2444433 788764 5556665421 1244 3445567788889999999877
No 79
>PLN02563 aminoacyl-tRNA ligase
Probab=89.09 E-value=2.2 Score=47.62 Aligned_cols=74 Identities=16% Similarity=0.189 Sum_probs=47.4
Q ss_pred CceEEEee-CCCCc-cchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGS-IHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 78 ~~~i~tGi-~PTG~-lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~l 142 (318)
++.+++++ -|+|. +||||.+..+. -+.++++ |++|++..+ |-|.+-. ...+ +-..++...+.+++
T Consensus 111 k~~v~~~~PYpnG~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~~q~ 190 (963)
T PLN02563 111 KFYVLDMFPYPSGAGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFRSQL 190 (963)
T ss_pred CEEEEeCCCCCCCcccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHHHHH
Confidence 35666776 56797 99999886442 3445544 788876555 4455421 1122 34566778888899
Q ss_pred HHcCC--CCCc
Q 021028 143 LACGI--DNSK 151 (318)
Q Consensus 143 lA~Gi--Dpek 151 (318)
..+|+ |+++
T Consensus 191 ~~lG~s~DW~r 201 (963)
T PLN02563 191 KSLGFSYDWDR 201 (963)
T ss_pred HHhCcEeeCCC
Confidence 99995 6665
No 80
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=88.60 E-value=0.9 Score=43.80 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=40.9
Q ss_pred CCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCc
Q 021028 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 87 PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~~~-i~~~~~~~~~~llA~GiDpek 151 (318)
|+|.+||||..+.+. -+.+.++ |++|.+ .=.|.|..-. ..++++ ++.+...+.+++.++|++++.
T Consensus 11 ~ng~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D~ 88 (319)
T cd00814 11 VNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFDY 88 (319)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCCC
Confidence 559999999887552 2333333 778764 4445553321 124544 445667888899999998763
No 81
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=87.94 E-value=1.1 Score=43.60 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=22.8
Q ss_pred CCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEecccee
Q 021028 87 PTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAI 122 (318)
Q Consensus 87 PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~ 122 (318)
|+|.+||||+.+.+. -+.++++ |++|.+ .-.|.|.+
T Consensus 12 vnG~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG~ 52 (338)
T cd00818 12 ANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGL 52 (338)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCCc
Confidence 569999999987542 2334433 788864 44455544
No 82
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=87.62 E-value=2.3 Score=46.71 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=45.2
Q ss_pred ceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHHH
Q 021028 79 KRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYLA 144 (318)
Q Consensus 79 ~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~llA 144 (318)
+.++.|+ -|||.+||||.++.+. -+.++++ |++|.+..+ |.|.+-. ..++ +-..++...+.+++..
T Consensus 31 ~~v~~~pPy~nG~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~~~~~ 110 (842)
T TIGR00396 31 YYILDMFPYPSGALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKKQLQA 110 (842)
T ss_pred EEEEcCCCCCCCccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4666664 4569999999886542 2444544 788876555 4444311 1133 4556677888899999
Q ss_pred cCCCC
Q 021028 145 CGIDN 149 (318)
Q Consensus 145 ~GiDp 149 (318)
+|+..
T Consensus 111 lG~~~ 115 (842)
T TIGR00396 111 LGFSY 115 (842)
T ss_pred hCCcc
Confidence 99743
No 83
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=87.55 E-value=3.3 Score=42.81 Aligned_cols=75 Identities=16% Similarity=0.105 Sum_probs=45.2
Q ss_pred CCCCceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEEE--EeccceecC----------------CCCH-H
Q 021028 75 SSVKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL----------------PYDT-Q 129 (318)
Q Consensus 75 ~~~~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~il--IaD~hA~t~----------------~~d~-~ 129 (318)
.+..+++|+- .|| +.+||||+...+. -+.++.+ |++|+++ |.|.--++. ..++ +
T Consensus 20 ~~~~v~mYvC-GpTvy~~~HiGhar~~v~~Dvl~R~l~~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e 98 (490)
T PRK14536 20 EHGHVRLYGC-GPTVYNYAHIGNLRTYVFQDTLRRTLHFLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLE 98 (490)
T ss_pred CCCceEEEee-CCccCCCcccchhHHHHHHHHHHHHHHhcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHH
Confidence 3445666652 555 8899999887552 2333332 7888765 566611111 1244 3
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 021028 130 QLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 130 ~i~~~~~~~~~~llA~GiDpe 150 (318)
-.+.+...+.+++.++|+.+.
T Consensus 99 ~a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 99 IAAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 345567788889999998764
No 84
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=86.58 E-value=0.38 Score=49.01 Aligned_cols=59 Identities=27% Similarity=0.337 Sum_probs=35.1
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
..|+...|.||...+... .+|.-... | .+.|..++.. .++ .+ +| +|||||. +|.|
T Consensus 254 ~~D~~~~G~D~~~~h~~~-~~a~~~a~--~--------------~~~p~~~~~~--g~v-~~-~G-~KMSKS~---GN~i 308 (511)
T PRK11893 254 PADVHLIGKDILRFHAVY-WPAFLMAA--G--------------LPLPKRVFAH--GFL-TL-DG-EKMSKSL---GNVI 308 (511)
T ss_pred CCcceEecccccccchhH-HHHHHHhC--C--------------CCCCCEEEee--ccE-EE-CC-eeecccC---CcEE
Confidence 578999999998853322 12222111 1 1346555542 334 24 66 8999998 6888
Q ss_pred eccC
Q 021028 296 NLLD 299 (318)
Q Consensus 296 ~L~D 299 (318)
.+.|
T Consensus 309 ~~~d 312 (511)
T PRK11893 309 DPFD 312 (511)
T ss_pred cHHH
Confidence 8743
No 85
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=86.50 E-value=0.56 Score=46.54 Aligned_cols=35 Identities=26% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCCccchhhHHHHHH--HHHHHhc--cCcEEEE-Eeccc
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLH 120 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~il-IaD~h 120 (318)
-|+|.+||||+.+.+. -+.++++ |++|++. =.|.|
T Consensus 11 y~nG~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 11 NVTGSLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 3679999999887552 2444444 7787654 44555
No 86
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=86.24 E-value=0.72 Score=48.20 Aligned_cols=66 Identities=15% Similarity=0.116 Sum_probs=45.2
Q ss_pred ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccc-cCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPL-IPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~l-l~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
--|-.+|.||..|+.-...+++.++.. .|.-+ +... -++ .+ .|||||. ++.|
T Consensus 329 ~iI~V~g~~q~~h~~~v~~~l~~lG~~------------------~~~~l~h~~~-~~V----~~-~kmSkr~---Gn~V 381 (566)
T TIGR00456 329 KMIYVWGSDHHLHIAQFFAILEKLGFY------------------KKKELIHLNF-GMV----PL-GSMKTRR---GNVI 381 (566)
T ss_pred EEEEEecCcHHHHHHHHHHHHHHcCCC------------------CCCceEEEEE-EEE----EC-CCCCccC---Ccee
Confidence 456779999999999999999998731 23222 2211 122 33 6999998 7999
Q ss_pred eccCCHHHHHHhhc
Q 021028 296 NLLDPKDVIANKIK 309 (318)
Q Consensus 296 ~L~D~pe~I~~KI~ 309 (318)
.+.|=.++..++..
T Consensus 382 ~~~dll~~~~~ra~ 395 (566)
T TIGR00456 382 SLDNLLDEASKRAG 395 (566)
T ss_pred eHHHHHHHHHHHHH
Confidence 99876666555433
No 87
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=85.57 E-value=0.65 Score=51.27 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=33.8
Q ss_pred cccccEEEecCcch---HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCC
Q 021028 214 LYQSDFVPVGEDQK---QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPS 290 (318)
Q Consensus 214 ~~~adivpvG~DQ~---~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~ 290 (318)
.+-+|+.+.|.||. .|-.+-..++- . |.. .|..++.- .++... +| +|||||.
T Consensus 543 ~~P~Dl~~~G~Di~r~Wf~~~l~~~~~~-~----g~~--------------P~k~vl~H--G~vld~-~G-~KMSKSl-- 597 (912)
T PRK05743 543 GYPADLYLEGSDQHRGWFQSSLLTSVAT-R----GKA--------------PYKQVLTH--GFTVDG-KG-RKMSKSL-- 597 (912)
T ss_pred CCCceEEEecccccchHHHHHHHHHHHh-c----CCC--------------ccceeEEe--eeEECC-CC-CCCCCCC--
Confidence 35699999999996 44444444443 2 211 13333321 344443 56 8999998
Q ss_pred CCCeEec
Q 021028 291 DQSRINL 297 (318)
Q Consensus 291 ~~s~I~L 297 (318)
+|.|..
T Consensus 598 -GNvIdP 603 (912)
T PRK05743 598 -GNVIDP 603 (912)
T ss_pred -CCcCCH
Confidence 576643
No 88
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=85.31 E-value=0.69 Score=45.10 Aligned_cols=17 Identities=41% Similarity=0.534 Sum_probs=13.8
Q ss_pred CCCCCccCCCCCCCCeEeccC
Q 021028 279 DGLSKMSKSAPSDQSRINLLD 299 (318)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D 299 (318)
+| +|||||. +|.|.+.|
T Consensus 296 ~g-~KmSKS~---gn~i~~~~ 312 (338)
T cd00818 296 DG-RKMSKSL---GNYVDPQE 312 (338)
T ss_pred CC-CCCCCCC---CCcCCHHH
Confidence 56 8999998 68888754
No 89
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=84.22 E-value=1.2 Score=48.74 Aligned_cols=74 Identities=18% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCceEEEee-CCCCccchhhHHHHH--HHHHHHhc--cCcEEEEEeccceecCC---------CCHH-HHHHHHHHHHHH
Q 021028 77 VKKRIVSGV-QPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVDLHAITLP---------YDTQ-QLSKATRETAAI 141 (318)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~ilIaD~hA~t~~---------~d~~-~i~~~~~~~~~~ 141 (318)
.++.|..=| -|||.+|+||..+-. .-+.++++ |++|.+-++ |||+=.| .+|. -...++.++..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~q 112 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKKQ 112 (814)
T ss_pred CceEEEeCCCCCCCCcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 456666666 799999999976432 22334433 677777654 7776433 2553 456688888999
Q ss_pred HHHcCC--CCCc
Q 021028 142 YLACGI--DNSK 151 (318)
Q Consensus 142 llA~Gi--Dpek 151 (318)
+.++|+ |++|
T Consensus 113 lk~lG~siDW~R 124 (814)
T COG0495 113 LKSLGFSIDWRR 124 (814)
T ss_pred HHHhCCcccccc
Confidence 999876 5655
No 90
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=83.92 E-value=1.8 Score=42.92 Aligned_cols=60 Identities=28% Similarity=0.370 Sum_probs=34.6
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~-~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
+.+|+...|.||...+-.. .++.-... .| ..| . .+.. .++..+ +| +|||||. +
T Consensus 295 ~p~d~~~~G~D~~~~h~~~-~l~~~~~~-~g---------------~~p~~~v~~h---g~v~~~-~g-~KMSKS~---G 349 (382)
T cd00817 295 YPTSLLVTGHDIIFFWVAR-MIMRGLKL-TG---------------KLPFKEVYLH---GLVRDE-DG-RKMSKSL---G 349 (382)
T ss_pred CCCCeeeeecCcCchHHHH-HHHHHHHh-hC---------------CCchHHeEee---eeEECC-CC-CCccccC---C
Confidence 3579999999998655443 33332211 11 113 1 2222 345444 66 8999998 6
Q ss_pred CeEeccC
Q 021028 293 SRINLLD 299 (318)
Q Consensus 293 s~I~L~D 299 (318)
|.|.+.|
T Consensus 350 n~v~~~d 356 (382)
T cd00817 350 NVIDPLD 356 (382)
T ss_pred CCCCHHH
Confidence 8887744
No 91
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=82.32 E-value=1.2 Score=44.69 Aligned_cols=70 Identities=26% Similarity=0.221 Sum_probs=42.3
Q ss_pred hHHHhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~K 283 (318)
..-|+..+|--.-||--+|.|-. +|+| .++|+-.- .+|... -+..++.. . +... +| +|
T Consensus 203 Csam~~~~lg~~~DIH~GG~DL~FPHHe--neiaq~~a-~~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 261 (384)
T PRK12418 203 CSAIALNRLGSGFDIQGGGSDLIFPHHE--FSAAHAEA-ATGERR-------------FARHYVHA--G-MIGL-DG-EK 261 (384)
T ss_pred HHHHHHHHcCCCcccccCccccccchhH--hHHHHHHH-hcCCCC-------------cceEEEEC--C-EECC-CC-Cc
Confidence 45677777777899999999975 5554 44444422 123211 12334432 2 2233 66 89
Q ss_pred ccCCCCCCCCeEecc
Q 021028 284 MSKSAPSDQSRINLL 298 (318)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (318)
||||. +|.|.+.
T Consensus 262 MSKSl---GN~i~~~ 273 (384)
T PRK12418 262 MSKSR---GNLVFVS 273 (384)
T ss_pred ccCcC---CCcCCHH
Confidence 99998 6777764
No 92
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=81.87 E-value=1.1 Score=47.04 Aligned_cols=59 Identities=29% Similarity=0.286 Sum_probs=30.7
Q ss_pred ccccEEEecCcchHHHHH-HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLEL-TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l-~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+..-|.||....-. ..-+.-.+. +.. +| +..+.+ .++... +| +|||||. +|
T Consensus 513 ~P~D~~~~G~D~~~~W~~~~l~~~~~l~---~~~-----------pf--k~v~~h---G~vld~-~G-~KMSKS~---GN 568 (601)
T PF00133_consen 513 YPVDLYIEGKDQIRGWFQSSLFLSVALF---GKE-----------PF--KKVITH---GFVLDE-DG-RKMSKSK---GN 568 (601)
T ss_dssp SSBSEEEEEGGGTTTHHHHHHHHHHHHS---SST-----------SB--SEEEEE-----EEET-TS-SB-BTTT---TB
T ss_pred CCcccccCCccchhhHHHHhHhhccccc---cCC-----------ch--heeeec---cccccc-ce-eecccCC---Cc
Confidence 468999999999765422 222222221 221 12 333333 345554 66 9999998 67
Q ss_pred eEec
Q 021028 294 RINL 297 (318)
Q Consensus 294 ~I~L 297 (318)
.|.+
T Consensus 569 vi~p 572 (601)
T PF00133_consen 569 VIDP 572 (601)
T ss_dssp --BH
T ss_pred ccCH
Confidence 7754
No 93
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=81.76 E-value=1 Score=43.36 Aligned_cols=59 Identities=20% Similarity=0.279 Sum_probs=34.2
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
..++.++|.|+..++.+.- .|--.. .| ++.|..++.. . .-.+ +| +|||||. ++.|
T Consensus 235 ~~~v~~~G~D~~~fh~~~~-pa~l~~--~~--------------~~~~~~~~~~--~-~~~~-~g-~kmSkS~---gn~i 289 (319)
T cd00814 235 PELVHFIGKDIIRFHAIYW-PAMLLG--AG--------------LPLPTRIVAH--G-YLTV-EG-KKMSKSR---GNVV 289 (319)
T ss_pred CceEEEEeechhhhhHHHH-HHHHHh--CC--------------CCCCcEeeee--e-eEEE-CC-eeecccC---Cccc
Confidence 4689999999988754321 111111 01 2335444432 2 2233 56 7999998 6888
Q ss_pred eccC
Q 021028 296 NLLD 299 (318)
Q Consensus 296 ~L~D 299 (318)
.+.|
T Consensus 290 ~~~~ 293 (319)
T cd00814 290 DPDD 293 (319)
T ss_pred CHHH
Confidence 8754
No 94
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=80.82 E-value=1.7 Score=45.70 Aligned_cols=70 Identities=23% Similarity=0.265 Sum_probs=48.7
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
+--|-.+|.||.+|+...+-+++..+... + ..++.-. ..+....+| .||||.. ++.
T Consensus 335 d~~IyV~gadq~~~~~ql~~~l~~~g~~~------------------~~~~~~h~~-~~l~~~~~g-~kmStR~---G~~ 391 (577)
T COG0018 335 DKLIYVLGADQHGHFKQLKAVLELLGYGP------------------DKEVLLHQG-VGLVRGGEG-VKMSTRA---GNV 391 (577)
T ss_pred CEEEEEeCCcchhHHHHHHHHHHHhcCCC------------------ccceEEEEE-EeeeECCCC-ccccccC---Cce
Confidence 34566899999999999999999988432 2 1222211 223333244 7899997 789
Q ss_pred EeccCCHHHHHHhh
Q 021028 295 INLLDPKDVIANKI 308 (318)
Q Consensus 295 I~L~D~pe~I~~KI 308 (318)
|.|.|=-|++.+|-
T Consensus 392 vtl~dllde~~era 405 (577)
T COG0018 392 VTLDDLLDEAGERA 405 (577)
T ss_pred EEHHHHHHHHHHHh
Confidence 99998888887554
No 95
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=80.67 E-value=1.3 Score=48.40 Aligned_cols=14 Identities=36% Similarity=0.771 Sum_probs=11.7
Q ss_pred ccccEEEecCcchH
Q 021028 215 YQSDFVPVGEDQKQ 228 (318)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (318)
+-+|+.+.|.||..
T Consensus 563 ~P~d~~i~G~Di~r 576 (861)
T TIGR00392 563 FPADFILEGSDQTR 576 (861)
T ss_pred CCceEEEEecchhc
Confidence 35799999999965
No 96
>PLN02286 arginine-tRNA ligase
Probab=80.50 E-value=2 Score=45.07 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=45.6
Q ss_pred ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEe
Q 021028 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~ 296 (318)
--|-.+|.||..|+.-...+++.++.... . + -..-+++.. .+|-++ +| +||||.. |+.|.
T Consensus 329 ~~IyVvg~~q~~hf~~v~~~l~~lG~~~~-~-~----------~~~l~h~~~---g~V~~~-~g-~kmStR~---G~~v~ 388 (576)
T PLN02286 329 WIIYVTDVGQQQHFDMVFKAAKRAGWLPE-D-T----------YPRLEHVGF---GLVLGE-DG-KRFRTRS---GEVVR 388 (576)
T ss_pred EEEEEEeCcHHHHHHHHHHHHHHcCCCcc-c-c----------CCceEEEee---ccEECC-CC-CcccCCC---CCeeE
Confidence 45667999999999999999999874200 0 0 001112222 456444 66 6999986 78999
Q ss_pred ccCCHHHHHH
Q 021028 297 LLDPKDVIAN 306 (318)
Q Consensus 297 L~D~pe~I~~ 306 (318)
|.|=-+++.+
T Consensus 389 L~dlldea~~ 398 (576)
T PLN02286 389 LVDLLDEAKS 398 (576)
T ss_pred HHHHHHHHHH
Confidence 9876665433
No 97
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=80.32 E-value=1.2 Score=49.06 Aligned_cols=59 Identities=29% Similarity=0.344 Sum_probs=32.9
Q ss_pred ccccEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~-hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+...|.||.. |+-...-. ... .++. -+.|..++.. .++.. +| +|||||. +|
T Consensus 529 ~P~D~~~~GkDii~~Hl~~~~~~-~~a--~~~~-------------~~~Pk~v~~h--G~vl~--~G-~KMSKS~---GN 584 (897)
T PRK12300 529 YPVDWRHSGKDLIPNHLTFFIFN-HVA--IFPE-------------EKWPRGIVVN--GFVLL--EG-KKMSKSK---GN 584 (897)
T ss_pred CCceEEEeeeccCccHHHHHHHH-HHH--hcCC-------------CccCcEEEEc--ceEEE--CC-ccccCcC---CC
Confidence 45799999999966 54444221 111 1111 1235444432 23322 66 8999998 67
Q ss_pred eEec
Q 021028 294 RINL 297 (318)
Q Consensus 294 ~I~L 297 (318)
.|.+
T Consensus 585 vVdp 588 (897)
T PRK12300 585 VIPL 588 (897)
T ss_pred CCCH
Confidence 7754
No 98
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=80.09 E-value=1.3 Score=44.12 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.0
Q ss_pred eEeccCCH
Q 021028 294 RINLLDPK 301 (318)
Q Consensus 294 ~I~L~D~p 301 (318)
+|++++++
T Consensus 229 ~i~l~~~~ 236 (377)
T TIGR00234 229 AVSLDEGK 236 (377)
T ss_pred cccCCccH
Confidence 33333333
No 99
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=79.59 E-value=1.4 Score=49.56 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=37.1
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+.+.|.||.. +=++|-++.-+... | ..| ..++.. .++..- +| +|||||. ||
T Consensus 490 ~P~d~~~~G~Dii~-~W~a~~l~~~~~~~-~---------------~~Pfk~V~~h--G~v~d~-~G-~KMSKSk---GN 545 (1052)
T PRK14900 490 YPTSVMETGHDIIF-FWVARMMMMGLHFM-G---------------EVPFRTVYLH--PMVRDE-KG-QKMSKTK---GN 545 (1052)
T ss_pred CCchhhcccccHHh-HHHHHHHHHHHHhc-C---------------CCccceeEec--ccEECC-CC-CCccCCC---CC
Confidence 45799999999984 45666666555421 1 235 223321 334332 56 8999998 67
Q ss_pred eEeccC
Q 021028 294 RINLLD 299 (318)
Q Consensus 294 ~I~L~D 299 (318)
.|...|
T Consensus 546 vIdP~d 551 (1052)
T PRK14900 546 VIDPLV 551 (1052)
T ss_pred CCCHHH
Confidence 776543
No 100
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=78.10 E-value=1.8 Score=43.81 Aligned_cols=72 Identities=10% Similarity=-0.039 Sum_probs=42.8
Q ss_pred CCceEE-EeeCCCCccchhhHHHHH--HHHHHHhc--cCcEEEEEec-cce--ecC-----CCCHHH-HHHHHHHHHHHH
Q 021028 77 VKKRIV-SGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLFFIVD-LHA--ITL-----PYDTQQ-LSKATRETAAIY 142 (318)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~ilIaD-~hA--~t~-----~~d~~~-i~~~~~~~~~~l 142 (318)
...++| +|-=|=+.+||||+...+ .-++++++ |++|.++.+. .|. ++. ..++++ .+++...+.+++
T Consensus 35 ~~v~~YvCGpTvY~~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~ 114 (411)
T TIGR03447 35 PEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDM 114 (411)
T ss_pred CcceEEEeCCccCCCcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344544 344444889999988765 23444443 7888765443 321 111 124543 455677888889
Q ss_pred HHcCCC
Q 021028 143 LACGID 148 (318)
Q Consensus 143 lA~GiD 148 (318)
.++|+.
T Consensus 115 ~~Lni~ 120 (411)
T TIGR03447 115 EALRVL 120 (411)
T ss_pred HHcCCC
Confidence 999875
No 101
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=78.04 E-value=3 Score=46.59 Aligned_cols=45 Identities=31% Similarity=0.303 Sum_probs=29.6
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.+.+|. -|||.+|+||.+.... -+.++++ |++|.+..+ |-|.+
T Consensus 61 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 111 (995)
T PTZ00419 61 KFVIVLPPPNVTGYLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDHAGI 111 (995)
T ss_pred eEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCCCch
Confidence 45666666 5789999999886542 3445554 788876555 44444
No 102
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=77.52 E-value=1.6 Score=47.93 Aligned_cols=59 Identities=29% Similarity=0.369 Sum_probs=36.4
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-cc-ccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EP-LIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~-ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
+-+|+...|.||..+ =++|-++.-+... | ..| .. +++ .++-.. +| +|||||. |
T Consensus 472 ~P~d~~~~G~Dii~~-W~a~~~~~~~~~~-~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKSl---G 526 (874)
T PRK05729 472 YPTSVLVTGFDIIFF-WVARMIMMGLHFT-G---------------QVPFKDVYIH---GLVRDE-QG-RKMSKSK---G 526 (874)
T ss_pred CCcccccccccccch-HHHHHHHHHHHhc-C---------------CCchhheEEe---eeEECC-CC-CCcccCC---C
Confidence 467999999999875 4555555543311 1 235 22 333 345444 66 8999998 6
Q ss_pred CeEecc
Q 021028 293 SRINLL 298 (318)
Q Consensus 293 s~I~L~ 298 (318)
|.|...
T Consensus 527 NvIdP~ 532 (874)
T PRK05729 527 NVIDPL 532 (874)
T ss_pred CCCCHH
Confidence 777654
No 103
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=77.12 E-value=3.1 Score=45.25 Aligned_cols=43 Identities=19% Similarity=0.151 Sum_probs=27.7
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccc
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH 120 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~h 120 (318)
++.+.+|. -|+|.+||||++..+. -+.++++ |++|.+..|=.|
T Consensus 39 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 39 VYSIDTPPPTVSGSLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred cEEEecCcCCCCCCccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 45566643 6789999999886552 2444443 788876555333
No 104
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=76.54 E-value=2.4 Score=46.17 Aligned_cols=60 Identities=25% Similarity=0.345 Sum_probs=33.1
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+...|.||.... +.+-++...-. +|. .| ..++.. .++... +| +|||||. +|
T Consensus 485 ~P~d~~~~G~Di~~~w-~~~~l~~~~~~-~~~---------------~Pf~~v~~h--g~v~~~-~G-~KMSKS~---GN 540 (800)
T PRK13208 485 FPMDLRPQGHDIIRTW-LFYTILRAYLL-TGK---------------LPWKNIMIS--GMVLDP-DG-KKMSKSK---GN 540 (800)
T ss_pred CCceEEEeecchhhhH-HHHHHHHHHHh-cCC---------------CCcceEEEe--eEEECC-CC-CCCCCCC---CC
Confidence 3589999999998532 33334333221 121 13 222221 334343 56 8999998 67
Q ss_pred eEecc
Q 021028 294 RINLL 298 (318)
Q Consensus 294 ~I~L~ 298 (318)
.|.+.
T Consensus 541 ~i~p~ 545 (800)
T PRK13208 541 VVTPE 545 (800)
T ss_pred CCCHH
Confidence 77653
No 105
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=76.34 E-value=1.5 Score=46.54 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=33.3
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
.+|+.+.|.||..++.+-= +-+-.-.| ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 254 p~~~~~~GkDii~fH~i~w---pa~l~~~~--------------~~~p~~v~~h--g~l~-~-eg-~KMSKS~---GN~i 308 (648)
T PRK12267 254 PADVHLVGKDILRFHAIYW---PIMLMALG--------------LPLPKKVFAH--GWWL-M-KD-GKMSKSK---GNVV 308 (648)
T ss_pred ccceEEEeeeecchhHHHH---HHHHHhCC--------------CCCCcEEEec--ceEE-E-CC-ceecccC---Cccc
Confidence 4689999999987544320 00000001 3346555542 2232 2 56 8999998 6788
Q ss_pred eccC
Q 021028 296 NLLD 299 (318)
Q Consensus 296 ~L~D 299 (318)
+..|
T Consensus 309 ~p~d 312 (648)
T PRK12267 309 DPEE 312 (648)
T ss_pred CHHH
Confidence 7643
No 106
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=75.78 E-value=6.9 Score=43.00 Aligned_cols=44 Identities=25% Similarity=0.207 Sum_probs=29.4
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccce
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHA 121 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA 121 (318)
++.+++|. -+||.+||||++.... -+.++++ |++|.+..|=.|+
T Consensus 34 ~f~i~~ppPy~nG~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 82 (861)
T TIGR00422 34 PFCIDIPPPNVTGSLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDHA 82 (861)
T ss_pred eEEEEeCCCCCCCCCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCcC
Confidence 46777765 5789999999886542 2444444 7888766664444
No 107
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=75.76 E-value=1.9 Score=47.90 Aligned_cols=60 Identities=30% Similarity=0.447 Sum_probs=33.5
Q ss_pred ccccEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~-hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+...|.||.+ |+... ++...- .++.. +.|..++.. ..+. . +| +|||||. +|
T Consensus 572 yP~D~~~~GkDii~~H~~~~--i~~~~a-~~~~~-------------~~Pk~i~~~--G~vl-~-~G-~KMSKSl---GN 627 (938)
T TIGR00395 572 YPLDWRISGKDLIPNHLTFY--IFHHVA-IFPEK-------------FWPRGIVVN--GYVM-L-EG-KKMSKSK---GN 627 (938)
T ss_pred CCceEEEEeeccccchHHHH--HHHHHH-cCCcc-------------ccCcEEEEe--ceEE-e-CC-ccccCcC---CC
Confidence 45799999999976 55544 222111 11111 125444432 2332 2 66 8999998 67
Q ss_pred eEecc
Q 021028 294 RINLL 298 (318)
Q Consensus 294 ~I~L~ 298 (318)
.|.+.
T Consensus 628 vI~p~ 632 (938)
T TIGR00395 628 VLTLE 632 (938)
T ss_pred CCCHH
Confidence 77654
No 108
>PLN02959 aminoacyl-tRNA ligase
Probab=75.03 E-value=2.5 Score=47.66 Aligned_cols=61 Identities=25% Similarity=0.298 Sum_probs=33.8
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
|-.|+..-|.||....- ..-+..-.. .+|.. +-|..++.. ..|. + +| +|||||. ||.
T Consensus 670 yP~Dl~~sG~Dii~~wl-~~~l~~~~a-l~~~~-------------P~p~~v~v~--G~V~-~-~G-~KMSKSk---GNv 726 (1084)
T PLN02959 670 YPFDLRVSGKDLIQNHL-TFAIYNHTA-IWAEE-------------HWPRGFRCN--GHLM-L-NS-EKMSKST---GNF 726 (1084)
T ss_pred CCCeEEEecccHHHHHH-HHHHHHHHH-hcCCC-------------CCCceEEEc--cEEe-c-CC-cCccccC---CCc
Confidence 56899999999977653 233322211 11211 124333321 2333 3 67 8999998 677
Q ss_pred Eecc
Q 021028 295 INLL 298 (318)
Q Consensus 295 I~L~ 298 (318)
|.+.
T Consensus 727 I~p~ 730 (1084)
T PLN02959 727 LTLR 730 (1084)
T ss_pred CCHH
Confidence 7653
No 109
>PLN02843 isoleucyl-tRNA synthetase
Probab=74.61 E-value=5.5 Score=44.51 Aligned_cols=74 Identities=16% Similarity=0.229 Sum_probs=42.4
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC--------------CCCHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL--------------PYDTQQLSKATRE 137 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~--------------~~d~~~i~~~~~~ 137 (318)
++.+..|. -++|.+||||.+..+. -+++++. |+++.+..| |-|.+-. ..+++++++.+++
T Consensus 33 ~f~i~~~PPy~nG~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG~D~hGlpie~~vek~l~~~~~~~~~~~~f~~~c~~ 112 (974)
T PLN02843 33 SFTLHDGPPYANGDLHIGHALNKILKDFINRYQLLQGKKVHYVPGWDCHGLPIELKVLQSLDQEARKELTPIKLRAKAAK 112 (974)
T ss_pred CEEEeCCCCCCCCCcchhHHHHHHHHHHHHHHHHhcCCccccCCccCCCCcHHHHHHHHHhchhhhccCCHHHHHHHHHH
Confidence 45666665 5789999999886542 2444443 777765444 4443311 1134444433332
Q ss_pred --------HHHHHHHcCC--CCCc
Q 021028 138 --------TAAIYLACGI--DNSK 151 (318)
Q Consensus 138 --------~~~~llA~Gi--Dpek 151 (318)
+..++..+|+ |.++
T Consensus 113 ~~~~~~~~~~~~~~~lG~~~Dw~~ 136 (974)
T PLN02843 113 FAKKTVDTQRESFKRYGVWGDWEN 136 (974)
T ss_pred HHHHHHHHHHHHHHHhCCceecCC
Confidence 3456778898 7775
No 110
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=74.21 E-value=7.9 Score=40.00 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=43.8
Q ss_pred CceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEE--EEecc-----------ceecC-----CCCH-HHHH
Q 021028 78 KKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLF--FIVDL-----------HAITL-----PYDT-QQLS 132 (318)
Q Consensus 78 ~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~i--lIaD~-----------hA~t~-----~~d~-~~i~ 132 (318)
.+++|+ -.|| ..+||||+...+. -++++.+ |++|.+ =|.|. ..++. ..++ +-.+
T Consensus 21 ~v~mY~-CGpTVYd~~HiGh~r~~v~~Dvl~R~l~~~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a~ 99 (481)
T PRK14534 21 DVKVYA-CGPTVYNYAHIGNFRTYIFEDLLIKSLRLLKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEISR 99 (481)
T ss_pred ceEEEe-CCCCCCCCCCccchhHHHHHHHHHHHHHHcCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHHH
Confidence 455554 3566 6699999887552 2333332 788765 34555 22222 1244 3345
Q ss_pred HHHHHHHHHHHHcCCCCC
Q 021028 133 KATRETAAIYLACGIDNS 150 (318)
Q Consensus 133 ~~~~~~~~~llA~GiDpe 150 (318)
+++..+.+++.++|+.++
T Consensus 100 ~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 100 FFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHcCCCCC
Confidence 567788889999999765
No 111
>PLN02660 pantoate--beta-alanine ligase
Probab=73.23 E-value=10 Score=36.64 Aligned_cols=67 Identities=19% Similarity=0.294 Sum_probs=45.7
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
.++|....|+--+|-+.+.|.+.+.+|. |.-++.- +.+-- .|| ==||+. .
T Consensus 145 v~P~~a~FGeKD~QQl~vIrrmV~dL~~--------------------~v~I~~~--ptvRe-~dG-LA~SSR------N 194 (284)
T PLN02660 145 VEPDVAVFGKKDYQQWRVIRRMVRDLDF--------------------DIEVVGS--PIVRE-ADG-LAMSSR------N 194 (284)
T ss_pred cCCCEeeecchHHHHHHHHHHHHHHcCC--------------------CceEEee--CceEC-CCC-Ceeccc------c
Confidence 3899999999999999999999999883 3323321 11222 266 467766 3
Q ss_pred EeccCCHHHHHHhhccc
Q 021028 295 INLLDPKDVIANKIKRC 311 (318)
Q Consensus 295 I~L~D~pe~I~~KI~~A 311 (318)
.||++...+....|-++
T Consensus 195 ~yLs~~eR~~A~~l~~~ 211 (284)
T PLN02660 195 VRLSAEEREKALSISRS 211 (284)
T ss_pred ccCCHHHHHHHHHHHHH
Confidence 57777776666666554
No 112
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=73.22 E-value=3 Score=46.43 Aligned_cols=16 Identities=31% Similarity=0.513 Sum_probs=13.0
Q ss_pred hcccccEEEecCcchH
Q 021028 213 LLYQSDFVPVGEDQKQ 228 (318)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (318)
+.+-+|+.+.|.||..
T Consensus 580 ~~~PaD~~~eG~Di~r 595 (961)
T PRK13804 580 LKWPADLYLEGSDQHR 595 (961)
T ss_pred cCCCceEEEEEccccc
Confidence 3456899999999974
No 113
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=72.80 E-value=3.7 Score=43.32 Aligned_cols=42 Identities=24% Similarity=0.430 Sum_probs=29.7
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHHh-c-cCcEE--EEEeccceec
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIALQ-N-SYETL--FFIVDLHAIT 123 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~LQ-~-g~~v~--ilIaD~hA~t 123 (318)
|+.=-|||+||+||...++ ..+.++- . |++|. ..|.||=..+
T Consensus 123 ~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~G~Q~ 170 (577)
T COG0018 123 YSSANPTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDWGTQI 170 (577)
T ss_pred EeCCCCCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcHHHHH
Confidence 5666899999999998766 2344442 2 78774 7889984443
No 114
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=71.78 E-value=2.8 Score=43.44 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred cEEEecCcchHHHH-HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEe
Q 021028 218 DFVPVGEDQKQHLE-LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (318)
Q Consensus 218 divpvG~DQ~~hi~-l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~ 296 (318)
++.+.|.|+..++. +---+..-.+. .++.|..++.. ..+. + +| +|||||. +|.|.
T Consensus 289 ~~~~~G~D~~~Fh~~~~p~~l~~~~~----------------~~~~P~~v~~~--G~v~-~-~G-~KMSKS~---GN~I~ 344 (556)
T PRK12268 289 SYYFIGKDNIPFHSIIWPAMLLGSGE----------------PLKLPDEIVSS--EYLT-L-EG-GKFSKSR---GWGIW 344 (556)
T ss_pred EEEEEeeccCcchHHHHHHHHHhcCC----------------CCCCCCEeecc--CCEE-E-CC-eeeccCC---CcccC
Confidence 58899999976443 22222222110 13456555542 3343 4 66 8999998 67775
Q ss_pred cc
Q 021028 297 LL 298 (318)
Q Consensus 297 L~ 298 (318)
+.
T Consensus 345 p~ 346 (556)
T PRK12268 345 VD 346 (556)
T ss_pred HH
Confidence 53
No 115
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=71.69 E-value=3.2 Score=45.50 Aligned_cols=59 Identities=31% Similarity=0.388 Sum_probs=34.8
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-c-cccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-E-PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~-~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
+-+|+...|.||.... ++|-++.-... .| ..| . .+++ .++... +| +|||||. +
T Consensus 477 ~P~d~~~~G~Dii~fw-~~~~~~~~~~~-~~---------------~~Pfk~v~~h---G~v~d~-~G-~KMSKS~---G 531 (861)
T TIGR00422 477 YPTDLLVTGYDIIFFW-VARMIFRSLAL-TG---------------QVPFKEVYIH---GLVRDE-QG-RKMSKSL---G 531 (861)
T ss_pred CCcceeecchhhhhHH-HHHHHHHHHHh-cC---------------CCchheEEEe---eEEECC-CC-CCCCcCC---C
Confidence 4689999999998764 44444432211 11 124 2 2333 344443 56 8999998 6
Q ss_pred CeEecc
Q 021028 293 SRINLL 298 (318)
Q Consensus 293 s~I~L~ 298 (318)
|.|.+.
T Consensus 532 N~i~p~ 537 (861)
T TIGR00422 532 NVIDPL 537 (861)
T ss_pred CCCCHH
Confidence 777654
No 116
>PLN02943 aminoacyl-tRNA ligase
Probab=71.34 E-value=3.6 Score=45.88 Aligned_cols=60 Identities=25% Similarity=0.371 Sum_probs=35.7
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~--~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
+-+|+.+.|.||.. +=++|-++.-... .| ..|. .+++ ..+... +| +|||||. |
T Consensus 535 yP~dl~~~G~Dii~-fW~a~m~~~~~~~-~~---------------~~Pf~~v~~h---g~v~~~-~G-~KMSKS~---G 589 (958)
T PLN02943 535 YPTTVLETGHDILF-FWVARMVMMGIEF-TG---------------TVPFSYVYLH---GLIRDS-QG-RKMSKTL---G 589 (958)
T ss_pred CCCeEEEEeehHHH-HHHHHHHHhhhhh-cC---------------CCChheEEEe---ccEECC-CC-CcccCcC---C
Confidence 45799999999984 5566666532211 11 1242 2333 234333 56 8999998 6
Q ss_pred CeEeccC
Q 021028 293 SRINLLD 299 (318)
Q Consensus 293 s~I~L~D 299 (318)
|.|...|
T Consensus 590 N~i~p~~ 596 (958)
T PLN02943 590 NVIDPLD 596 (958)
T ss_pred CCCCHHH
Confidence 7776643
No 117
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=70.81 E-value=2.8 Score=46.07 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=27.4
Q ss_pred CCCccchhhHHHH--HHHHHHHhc--cCcEEEEEeccceec
Q 021028 87 PTGSIHLGNYLGA--IKNWIALQN--SYETLFFIVDLHAIT 123 (318)
Q Consensus 87 PTG~lHLGhyvg~--l~~~~~LQ~--g~~v~ilIaD~hA~t 123 (318)
+||.+|+||.+.. +.-+.++++ |+++.++-+=.||=+
T Consensus 44 VTG~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhAGI 84 (877)
T COG0525 44 VTGSLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHAGI 84 (877)
T ss_pred CCCcccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCCCc
Confidence 5899999998732 234555554 899998888888865
No 118
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=70.47 E-value=4.9 Score=42.10 Aligned_cols=66 Identities=18% Similarity=0.195 Sum_probs=44.3
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
+--|-.+|.||..|+.-...+++.++..... ...+... .+| .+ +| +||||.. |+.|
T Consensus 325 d~~IyV~g~dq~~h~~~l~~~~~~lg~~~~~-----------------~l~h~~~-g~V-~~-~g-~kmStR~---G~~v 380 (562)
T PRK12451 325 DKALYVVGPEQSLHFNQFFTVLKKLGYTWVD-----------------GMEHVPF-GLI-LK-DG-KKMSTRK---GRVV 380 (562)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHcCCCccc-----------------CeEEEee-eeE-ec-CC-CCCcCCC---CCee
Confidence 3567789999999999999999998742100 0111111 234 24 55 6999997 7899
Q ss_pred eccCCHHHHH
Q 021028 296 NLLDPKDVIA 305 (318)
Q Consensus 296 ~L~D~pe~I~ 305 (318)
.|.|=-++..
T Consensus 381 ~l~dLldea~ 390 (562)
T PRK12451 381 LLEEVLEEAI 390 (562)
T ss_pred EHHHHHHHHH
Confidence 9887655533
No 119
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=70.22 E-value=6.6 Score=43.26 Aligned_cols=44 Identities=32% Similarity=0.367 Sum_probs=27.5
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccce
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHA 121 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA 121 (318)
++.+.+|. -+||.+|+||++.... -+.++++ |++|.+.-|=.|+
T Consensus 37 ~f~i~~ppP~~~G~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 85 (874)
T PRK05729 37 PFSIVIPPPNVTGSLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDHA 85 (874)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCcc
Confidence 35555554 5689999999886542 2444443 7888665554443
No 120
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=70.20 E-value=5.2 Score=39.34 Aligned_cols=73 Identities=27% Similarity=0.230 Sum_probs=44.2
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
+--|-.+|.||..|+.-...++++++..-.. .. ..+... .++. +.||..|||+.. ++.|
T Consensus 239 d~~iyV~~~~q~~hf~~l~~~l~~lg~~~~~---------------~~-~~H~~~-g~vl-~~~gk~~mstR~---G~~i 297 (354)
T PF00750_consen 239 DKIIYVVGADQKGHFKQLFAILEALGYDPEA---------------VK-LQHVSF-GVVL-LKDGKVKMSTRK---GNVI 297 (354)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTT-HHHH---------------CT-EEEEEE--EEE-ETTBEESS-TTT---TSST
T ss_pred ccEEEEecCchhhHHHHHHHHHHHhCCCCCC---------------CE-EEEEEE-EEEE-cCCCCccccCCC---CCce
Confidence 4557789999999999999999999852100 01 111111 1222 236622899997 7899
Q ss_pred eccCCHHHHHHhhc
Q 021028 296 NLLDPKDVIANKIK 309 (318)
Q Consensus 296 ~L~D~pe~I~~KI~ 309 (318)
.|.|==++..++.+
T Consensus 298 ~l~dllde~~~~a~ 311 (354)
T PF00750_consen 298 TLDDLLDEAVERAL 311 (354)
T ss_dssp BHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHH
Confidence 98765555544443
No 121
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=69.68 E-value=4.2 Score=39.51 Aligned_cols=75 Identities=16% Similarity=0.108 Sum_probs=38.5
Q ss_pred CCCceEEE-eeCCCCccchhhHHHHHH--HHHH-Hhc-cCcEE--EEEeccceecC------CCCHHH-HHHHHHHHHHH
Q 021028 76 SVKKRIVS-GVQPTGSIHLGNYLGAIK--NWIA-LQN-SYETL--FFIVDLHAITL------PYDTQQ-LSKATRETAAI 141 (318)
Q Consensus 76 ~~~~~i~t-Gi~PTG~lHLGhyvg~l~--~~~~-LQ~-g~~v~--ilIaD~hA~t~------~~d~~~-i~~~~~~~~~~ 141 (318)
+..+++|+ |--+=...||||+...+. -+++ |+. |++|. .=|.|..--+- ..++.+ .+.+++.+.++
T Consensus 6 ~~~v~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~d 85 (300)
T PF01406_consen 6 PGKVRMYVCGPTVYDYAHIGHARTYVFFDVLRRYLEYLGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFED 85 (300)
T ss_dssp TTEEEEEEEEEBTTS--BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCCCCCCCcceeeeeeHHHHHHHHHHcCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34556654 444447899999887652 2222 333 67764 45677643221 124444 45567788888
Q ss_pred HHHcCCCCC
Q 021028 142 YLACGIDNS 150 (318)
Q Consensus 142 llA~GiDpe 150 (318)
+.++|+.+.
T Consensus 86 m~~Lnv~~p 94 (300)
T PF01406_consen 86 MKALNVLPP 94 (300)
T ss_dssp HHHTT----
T ss_pred HHHcCCCCC
Confidence 899998753
No 122
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=69.35 E-value=23 Score=31.65 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=40.3
Q ss_pred eCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccce-ec--CCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCch
Q 021028 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHA-IT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVR 161 (318)
Q Consensus 85 i~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA-~t--~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~ 161 (318)
|+| +|+||... +... ++..-+++|.|+.... .. ++.+.++..+.++.. +...|+|.+++.|.-=.|+.
T Consensus 8 F~P---~H~GHl~~-i~~a--~~~~~~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~---~~~~~~~~~rv~i~pi~D~~ 78 (181)
T cd02168 8 FQP---FHNGHLAV-VLIA--LEKAKKVIILIGSARTARNIKNPWTSEEREVMIEAA---LSDAGADLARVHFRPLRDHL 78 (181)
T ss_pred cCC---CCHHHHHH-HHHH--HHHCCeEEEEeCCCCCCCCCCCCcCHHHHHHHHHHH---HhccCCCcceEEEEecCCCC
Confidence 466 89999754 3343 2222267777766522 12 233445444444333 33458898887776544431
Q ss_pred hhhHHHHH
Q 021028 162 AHVELMWL 169 (318)
Q Consensus 162 ~~~el~w~ 169 (318)
+.+..|.
T Consensus 79 -~~~~~W~ 85 (181)
T cd02168 79 -YSDNLWL 85 (181)
T ss_pred -CChHHHH
Confidence 2344564
No 123
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=69.03 E-value=3.3 Score=42.83 Aligned_cols=69 Identities=25% Similarity=0.151 Sum_probs=39.9
Q ss_pred hHHHhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~K 283 (318)
..-|+...|--.-||..+|.|-. ||+| -++|+-.-. +|. +.+...+.. . ...+ +| +|
T Consensus 222 CsaMs~~~lg~~~DIH~GG~DliFPHHe--neiAqs~a~-~g~--------------~~~~~w~h~--g-~l~~-~g-~K 279 (490)
T PRK14536 222 CSAMSMKYLGEQCDIHIGGVDHIRVHHT--NEIAQCEAA-TGK--------------PWVRYWLHH--E-FLLM-NK-GK 279 (490)
T ss_pred HHHHHHHHcCCceeEEeccccCCCcchh--hHHHHHHHh-cCC--------------CcceEEEEc--C-EEee-cC-cc
Confidence 34556666656679999999965 5664 345554321 121 112333331 1 2233 66 79
Q ss_pred ccCCCCCCCCeEecc
Q 021028 284 MSKSAPSDQSRINLL 298 (318)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (318)
||||. +|.|.+.
T Consensus 280 MSKSl---GN~itl~ 291 (490)
T PRK14536 280 MSKSA---GQFLTLS 291 (490)
T ss_pred ccccC---CCcccHH
Confidence 99998 6788773
No 124
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=68.89 E-value=42 Score=34.08 Aligned_cols=70 Identities=26% Similarity=0.254 Sum_probs=40.5
Q ss_pred hHHHhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~K 283 (318)
..-|+..+|--.-|+.-+|.|-. +|++- ++|+-.- .+|... -+...+.. . .... +| +|
T Consensus 230 Csam~~~~lg~~~Dih~GG~DLifpHhen--eiaq~~A-~~g~~~-------------~~~~w~H~--g-~l~~-~G-~K 288 (411)
T TIGR03447 230 CSAIATNRLGAGFDIQGGGSDLIFPHHEF--SAAHAEA-ATGVRR-------------MARHYVHA--G-MIGL-DG-EK 288 (411)
T ss_pred HHHHHHHHcCCceecccCcccccccchHh--HHHHHHH-hcCCCC-------------cceEEEEC--C-EECc-CC-CC
Confidence 45667777777789999999965 45543 4444322 123211 12233332 1 2233 66 89
Q ss_pred ccCCCCCCCCeEecc
Q 021028 284 MSKSAPSDQSRINLL 298 (318)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (318)
||||. +|.|.+.
T Consensus 289 MSKSl---GN~i~~~ 300 (411)
T TIGR03447 289 MSKSL---GNLVFVS 300 (411)
T ss_pred ccCcC---CCCCCHH
Confidence 99998 6777663
No 125
>PLN02381 valyl-tRNA synthetase
Probab=68.72 E-value=5.9 Score=44.75 Aligned_cols=59 Identities=25% Similarity=0.327 Sum_probs=36.5
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~--~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
|-+|+..-|-||. ++=++|-++.-+.. .| ..|. .+++ .+|-.- +| +|||||. |
T Consensus 607 ~P~d~~~~G~Dii-~~W~~rmi~~~~~~-~~---------------~~PFk~v~~h---G~V~D~-~G-~KMSKS~---G 661 (1066)
T PLN02381 607 YPTSVLETGHDIL-FFWVARMVMMGMQL-GG---------------DVPFRKVYLH---PMIRDA-HG-RKMSKSL---G 661 (1066)
T ss_pred CCCeeeeecchhh-hhHHHHHHHHHHHh-CC---------------CCchHHheec---ceEECC-CC-CCCCCCC---C
Confidence 5689999999998 44566666544321 11 1342 2333 455554 56 8999998 6
Q ss_pred CeEecc
Q 021028 293 SRINLL 298 (318)
Q Consensus 293 s~I~L~ 298 (318)
|.|...
T Consensus 662 NvIdP~ 667 (1066)
T PLN02381 662 NVIDPL 667 (1066)
T ss_pred CCCCHH
Confidence 777543
No 126
>PLN02843 isoleucyl-tRNA synthetase
Probab=68.06 E-value=3.5 Score=46.04 Aligned_cols=16 Identities=38% Similarity=0.590 Sum_probs=13.5
Q ss_pred hcccccEEEecCcchH
Q 021028 213 LLYQSDFVPVGEDQKQ 228 (318)
Q Consensus 213 l~~~adivpvG~DQ~~ 228 (318)
+.+-+|+...|.||..
T Consensus 561 ~~~PaDl~~eG~Di~r 576 (974)
T PLN02843 561 LSYPADLYLEGSDQHR 576 (974)
T ss_pred cCCCceeeeeeccccc
Confidence 4466999999999987
No 127
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=67.63 E-value=5.4 Score=41.72 Aligned_cols=40 Identities=23% Similarity=0.566 Sum_probs=28.4
Q ss_pred eEEEeeCCCCccchhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 021028 80 RIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (318)
Q Consensus 80 ~i~tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~--ilIaD~ 119 (318)
.=|++--|+|++|+||....+ .-+.++.+ |++|. ..|+||
T Consensus 116 ve~~spn~~~~~hiGh~r~~~~gd~l~r~~~~~g~~v~r~~yinD~ 161 (566)
T TIGR00456 116 IEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIREYYVNDW 161 (566)
T ss_pred EEecCCCCCCCCchhhhHHHHHHHHHHHHHHHCCCCeeEEeeecch
Confidence 446677888999999998766 23444433 77764 788887
No 128
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=67.50 E-value=5.7 Score=44.37 Aligned_cols=58 Identities=24% Similarity=0.313 Sum_probs=35.6
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc--cccCCCCcccccCCCCCCCccCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE--PLIPPAGARVMSLTDGLSKMSKSAPSDQ 292 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~--~ll~~~~~~lp~L~dg~~KMSKS~p~~~ 292 (318)
|-+|+...|.||.. +=.+|-++.-+... | ..|. .+++ .++-.- +| +|||||. |
T Consensus 537 ~P~d~~~~G~Dii~-~W~arm~~~~~~~~-~---------------~~Pfk~v~~H---G~v~d~-~G-~KMSKSl---G 591 (995)
T PTZ00419 537 FPTSLLETGSDILF-FWVARMVMMSLHLT-D---------------KLPFKTVFLH---AMVRDS-QG-EKMSKSK---G 591 (995)
T ss_pred CCCcEEEechhHHh-HHHHHHHHHHHHhc-C---------------CCChHHHhcc---ceEECC-CC-CCcccCC---C
Confidence 46899999999876 44555555544311 1 2352 2333 345443 56 8999998 6
Q ss_pred CeEec
Q 021028 293 SRINL 297 (318)
Q Consensus 293 s~I~L 297 (318)
|.|..
T Consensus 592 NvIdP 596 (995)
T PTZ00419 592 NVIDP 596 (995)
T ss_pred CcCCh
Confidence 77743
No 129
>KOG0436 consensus Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=67.09 E-value=32 Score=35.34 Aligned_cols=80 Identities=13% Similarity=0.205 Sum_probs=49.2
Q ss_pred CCCCCceEEEeeCCCCccchhhHHHHH--HHHHHHhc--cCcEEE-EEeccceecC-------CCCH-HHHHHHHHHHHH
Q 021028 74 SSSVKKRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF-FIVDLHAITL-------PYDT-QQLSKATRETAA 140 (318)
Q Consensus 74 ~~~~~~~i~tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~-~~i~~~~~~~~~ 140 (318)
.+...+..| +-..+||||+...+ ..+.++|. |-.+++ -=.|-|.+-. ..+| +.+..+...+..
T Consensus 41 ~~lTTPifY----vNAaPHlGhlYS~llaDai~R~q~lkg~~v~fsTGTDEHGlKIqtaaatnG~~P~e~cDr~s~~f~q 116 (578)
T KOG0436|consen 41 FVLTTPIFY----VNAAPHLGHLYSTLLADAIARFQRLKGKKVIFSTGTDEHGLKIQTAAATNGRNPPELCDRISQSFRQ 116 (578)
T ss_pred eEEecceee----cCCCcchhHHHHHHHHHHHHHHHhhcCCceEeecCCCccchhhhhhHhhcCCChHHHHhhhhHHHHH
Confidence 333455555 56778999987655 34666776 333333 3357776632 2244 666777788888
Q ss_pred HHHHcCCCCCceEEEEcCC
Q 021028 141 IYLACGIDNSKASVFVQSH 159 (318)
Q Consensus 141 ~llA~GiDpek~~i~~qS~ 159 (318)
.+.+.||.-.+ |+.-.+
T Consensus 117 L~k~~gi~yt~--FIRTTd 133 (578)
T KOG0436|consen 117 LWKDAGIAYTK--FIRTTD 133 (578)
T ss_pred HHHHhCcchhh--eeecCC
Confidence 88999997653 444333
No 130
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=66.88 E-value=3.4 Score=44.19 Aligned_cols=70 Identities=29% Similarity=0.356 Sum_probs=42.8
Q ss_pred hHHHhhhhhcccccEEEecCcc-hHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ-~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~K 283 (318)
...|+.|||-...||--+|.|- .||++ -++|+-.- .+|...| ...++.. ..| .+ +| .|
T Consensus 257 Csam~~~~lg~~~DIh~gG~DL~FPHHe--NEiAQseA-~~~~~~~-------------v~y~~H~--G~L-~i-~G-~K 315 (651)
T PTZ00399 257 CSAMASNILGDPIDIHSGGIDLKFPHHD--NELAQSEA-YFDKHQW-------------VNYFLHS--GHL-HI-KG-LK 315 (651)
T ss_pred HHHHHHHHcCCcceeeccCCCCCCCcch--hHHHHHHH-hhCCCCC-------------CcEEEEE--EEE-Ee-cc-ch
Confidence 4689999999999999999998 46643 34444322 1232111 1122221 122 33 66 79
Q ss_pred ccCCCCCCCCeEecc
Q 021028 284 MSKSAPSDQSRINLL 298 (318)
Q Consensus 284 MSKS~p~~~s~I~L~ 298 (318)
||||. +|.|.+.
T Consensus 316 MSKSL---GNfItp~ 327 (651)
T PTZ00399 316 MSKSL---KNFITIR 327 (651)
T ss_pred hhhcC---CCcccHH
Confidence 99998 6787764
No 131
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=66.66 E-value=4.8 Score=44.95 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.3
Q ss_pred ccccEEEecCcchHH
Q 021028 215 YQSDFVPVGEDQKQH 229 (318)
Q Consensus 215 ~~adivpvG~DQ~~h 229 (318)
+-+|+...|.||...
T Consensus 544 ~Pad~~~~G~Di~r~ 558 (975)
T PRK06039 544 FPADFIVEGIDQTRG 558 (975)
T ss_pred CCceEEEechhhHhh
Confidence 468999999999753
No 132
>PLN02224 methionine-tRNA ligase
Probab=65.69 E-value=4.6 Score=42.88 Aligned_cols=60 Identities=18% Similarity=0.297 Sum_probs=35.7
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
...|+.++|.|-..++.+.= -|--+.. | +..|..++.. ..+ .+ +| +|||||. ++.
T Consensus 320 w~~~v~~iGKDii~fH~i~w-pa~l~~~--g--------------~~~P~~i~~~--g~l-~~-eG-~KMSKS~---GN~ 374 (616)
T PLN02224 320 WPASLHLIGKDILRFHAVYW-PAMLMSA--G--------------LELPKMVFGH--GFL-TK-DG-MKMGKSL---GNT 374 (616)
T ss_pred CCcceEEEeecccccHHHHH-HHHHHHC--C--------------CCCCcEEEec--ccE-ec-CC-ccccccC---Ccc
Confidence 35689999999988644332 1111110 1 3457666543 223 34 77 8999998 678
Q ss_pred EeccC
Q 021028 295 INLLD 299 (318)
Q Consensus 295 I~L~D 299 (318)
|++.|
T Consensus 375 i~p~e 379 (616)
T PLN02224 375 LEPFE 379 (616)
T ss_pred CCHHH
Confidence 86543
No 133
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=65.26 E-value=5.5 Score=41.02 Aligned_cols=55 Identities=18% Similarity=0.293 Sum_probs=31.8
Q ss_pred EEEecCcchHHHHHHH-HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEec
Q 021028 219 FVPVGEDQKQHLELTR-ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINL 297 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~R-dia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L 297 (318)
+.+.|.|....+.+.- -+..-.+ ++.|..++.. ..+. + +| +|||||. +|.|.+
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~------------------~~~~~~~~~~--g~v~-~-~g-~KmSKS~---Gn~i~~ 338 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLG------------------LPLPTQVFSH--GYLT-V-EG-GKMSKSL---GNVVDP 338 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCC------------------CCCCCEEEee--ccEE-E-CC-ceecccC---CceecH
Confidence 8999999998643321 1111111 2335555542 2332 3 55 8999998 688866
Q ss_pred cC
Q 021028 298 LD 299 (318)
Q Consensus 298 ~D 299 (318)
.|
T Consensus 339 ~d 340 (530)
T TIGR00398 339 SD 340 (530)
T ss_pred HH
Confidence 43
No 134
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=64.93 E-value=35 Score=36.96 Aligned_cols=77 Identities=12% Similarity=-0.016 Sum_probs=45.4
Q ss_pred CCCCCCceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccce--ecC-----CCCHHH-HHHHHHH
Q 021028 73 SSSSVKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHA--ITL-----PYDTQQ-LSKATRE 137 (318)
Q Consensus 73 ~~~~~~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA--~t~-----~~d~~~-i~~~~~~ 137 (318)
+..+...++|+ -.|| ..+||||+...+. -+.++.+ |++|.++.. |.|. ++. ..++.+ .+.+...
T Consensus 243 P~~~~~V~mYv-CGPTVYd~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~ 321 (699)
T PRK14535 243 PIDPENVRMYV-CGMTVYDYCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQA 321 (699)
T ss_pred cCCCCceEEEe-cCCcCCCCCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33345566665 3566 7799999887552 2334333 788765433 2221 111 124433 4556778
Q ss_pred HHHHHHHcCCCCC
Q 021028 138 TAAIYLACGIDNS 150 (318)
Q Consensus 138 ~~~~llA~GiDpe 150 (318)
+.+++.++||.+.
T Consensus 322 F~~d~~~LnI~~p 334 (699)
T PRK14535 322 MHEDADALGVLRP 334 (699)
T ss_pred HHHHHHHcCCCCC
Confidence 8888999998764
No 135
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.56 E-value=5.6 Score=43.56 Aligned_cols=65 Identities=20% Similarity=0.137 Sum_probs=34.8
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~-ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
-.|+-.+|.|+..++-|=-..=.++=+ ....|+ ...|.. |++. .++.+- +| +|||||. +|.
T Consensus 526 PVD~yigG~ehavlHLly~rF~Hkal~--d~g~~p---------~~epf~~L~~q--GmVl~~-~g-~KMSKSK---gN~ 587 (814)
T COG0495 526 PVDLYIGGIEHAVLHLLYFRFFHKALF--DEGLVP---------KDEPFKKLITQ--GMVLGE-EG-EKMSKSK---GNV 587 (814)
T ss_pred ChheeecchhHHHHHHHHHHHHHHHhc--ccCcCC---------Cccchhhhhcc--ceEEec-CC-Ccccccc---CCC
Confidence 489999999998766543322222211 111111 122322 4432 455554 45 7999998 567
Q ss_pred Eecc
Q 021028 295 INLL 298 (318)
Q Consensus 295 I~L~ 298 (318)
|.+.
T Consensus 588 v~p~ 591 (814)
T COG0495 588 VDPE 591 (814)
T ss_pred CCHH
Confidence 6543
No 136
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=63.28 E-value=6.8 Score=41.03 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=27.5
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHHh-c-cCcEE--EEEecc
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIALQ-N-SYETL--FFIVDL 119 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~LQ-~-g~~v~--ilIaD~ 119 (318)
|+.--|||++|+||...++ ..+.++- . |++|. .-|+||
T Consensus 119 ~sSpNp~kplHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~ 162 (562)
T PRK12451 119 YSSPNIAKPFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDW 162 (562)
T ss_pred ecCCCCCCCcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCc
Confidence 5666899999999998765 2344443 3 78774 688888
No 137
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=62.94 E-value=41 Score=29.31 Aligned_cols=67 Identities=25% Similarity=0.255 Sum_probs=32.8
Q ss_pred eCCCCccchhhHHHHHHHHHHHhccCcEEEEEe-ccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCc
Q 021028 85 VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIV-DLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (318)
Q Consensus 85 i~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIa-D~hA~t~--~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~ 160 (318)
|+| +|+||... +....+. .-+++|+++ +...... +.+.++..+..+. .+...+++-+++.++...|.
T Consensus 8 FdP---~H~GHl~~-i~~a~~~--~d~l~v~v~s~~~~~~~~~~~~~~~R~~mi~~---~~~~~~~~~~~v~v~~~~d~ 77 (163)
T cd02166 8 FQP---FHLGHLKV-IKWILEE--VDELIIGIGSAQESHTLENPFTAGERVLMIRR---ALEEEGIDLSRYYIIPVPDI 77 (163)
T ss_pred cCC---CCHHHHHH-HHHHHHH--CCEEEEEecCCCCCCCCCCCCCHHHHHHHHHH---HHHhcCCCcCeEEEEecCCC
Confidence 466 99999754 3344222 224555564 3333221 2333433333322 22333666777777666554
No 138
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=62.64 E-value=3.4 Score=40.67 Aligned_cols=41 Identities=22% Similarity=0.390 Sum_probs=25.6
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHH-hc-cCcE--EEEEecccee
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIAL-QN-SYET--LFFIVDLHAI 122 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~L-Q~-g~~v--~ilIaD~hA~ 122 (318)
|+.--|||++|+||+..++ ..+.++ .. |++| ...|+||=..
T Consensus 26 ~sSpNp~kplHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G~Q 72 (354)
T PF00750_consen 26 FSSPNPTKPLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWGTQ 72 (354)
T ss_dssp E---BTTSS-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTSHH
T ss_pred ecCCCCCCCCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCCHH
Confidence 5666889999999998665 234444 33 7776 4788998443
No 139
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=62.61 E-value=5.9 Score=44.62 Aligned_cols=44 Identities=34% Similarity=0.362 Sum_probs=30.1
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccce
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHA 121 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA 121 (318)
++.++.|. -+||.+|+||.++... -+.++++ |++|.+..+-.|+
T Consensus 49 ~f~i~~pPP~~nG~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~~ 97 (1052)
T PRK14900 49 PFSIVLPPPNVTGSLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDHA 97 (1052)
T ss_pred CEEEecCCCCCCCcchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCcc
Confidence 46777776 6789999999886542 3455554 8888766555444
No 140
>PLN02882 aminoacyl-tRNA ligase
Probab=62.60 E-value=7.1 Score=44.48 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=16.9
Q ss_pred ccccEEEecCcchHHHHHHHHHHHH
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAER 239 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k 239 (318)
+-+|+..-|.||.... +.+-++-.
T Consensus 566 ~PaD~i~eG~Dq~RgW-f~~ll~~s 589 (1159)
T PLN02882 566 FPADFVAEGLDQTRGW-FYTLMVLS 589 (1159)
T ss_pred CCceEEEEecchhhhH-HHHHHHHH
Confidence 3499999999998865 44444433
No 141
>PLN02563 aminoacyl-tRNA ligase
Probab=62.58 E-value=5.7 Score=44.38 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=21.2
Q ss_pred ccccEEEecCcc-hHHHHHHHHHHHHhh
Q 021028 215 YQSDFVPVGEDQ-KQHLELTRELAERVN 241 (318)
Q Consensus 215 ~~adivpvG~DQ-~~hi~l~Rdia~k~n 241 (318)
+-+|+..+|.|| .-|+-.+|-....+.
T Consensus 615 ~PvD~yigG~dhailHLlY~Rfw~~~l~ 642 (963)
T PLN02563 615 MPVDLYVGGAEHAVLHLLYARFWHKVLY 642 (963)
T ss_pred CCCcEeeccHHHHhhHhHHHHHHHHHHH
Confidence 469999999999 577777777765544
No 142
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.57 E-value=5.1 Score=41.13 Aligned_cols=71 Identities=27% Similarity=0.218 Sum_probs=45.2
Q ss_pred hHHHhhhhhcccccEEEecCc-chHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGED-QKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSK 283 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~D-Q~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~K 283 (318)
...|+.+.|--.-||--||.| +.||+| -|+|+.--. +|.+.|- -.-+++ .+| .. +| +|
T Consensus 210 CSaM~~~~LG~~~DIHgGG~DLiFPHHE--NEiAQsea~-~g~~~~a------------~yWmH~---G~l-~i-~g-eK 268 (464)
T COG0215 210 CSAMSTKYLGETFDIHGGGSDLIFPHHE--NEIAQSEAA-TGVKPFA------------KYWMHN---GFL-NI-DG-EK 268 (464)
T ss_pred HHHHHHHHhCCCcceecCcccccCCCcc--cHHHHHHhh-hCCCcce------------eEeEEc---cee-ee-cC-cC
Confidence 467889999889999999999 578887 355554321 2321110 011333 222 22 66 89
Q ss_pred ccCCCCCCCCeEeccC
Q 021028 284 MSKSAPSDQSRINLLD 299 (318)
Q Consensus 284 MSKS~p~~~s~I~L~D 299 (318)
||||. +|-|.+.|
T Consensus 269 MSKSL---GNfiti~d 281 (464)
T COG0215 269 MSKSL---GNFITVRD 281 (464)
T ss_pred ccccc---CCeeEHHH
Confidence 99998 68888765
No 143
>PLN02286 arginine-tRNA ligase
Probab=61.80 E-value=6.1 Score=41.56 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=27.4
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHH-hc-cCcEE--EEEecc
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIAL-QN-SYETL--FFIVDL 119 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~L-Q~-g~~v~--ilIaD~ 119 (318)
|+.--|||++|+||...++ ..+.++ +. |++|. .-|+||
T Consensus 123 fsSpNp~kplHvGHlRsaiiGdsLaril~~~G~~V~r~nyinD~ 166 (576)
T PLN02286 123 FSSPNIAKEMHVGHLRSTIIGDTLARMLEFSGVEVLRRNHVGDW 166 (576)
T ss_pred ecCCCCCCCCccccccchhhHHHHHHHHHHcCCceEEEEeecch
Confidence 6677899999999988655 234444 33 77764 688888
No 144
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=61.41 E-value=41 Score=28.19 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=46.5
Q ss_pred EeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q 021028 83 SGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (318)
Q Consensus 83 tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~ 159 (318)
+-+.=||++..-|++-+ |.+|.+-++++++-..-=. ..-....+++.....+.+...||+|+++.+++=|.
T Consensus 32 IrvpC~Grv~~~~il~A------f~~GADGV~V~gC~~g~Ch~~~Gn~~a~~Rv~~~k~~L~~~Gi~~eRv~~~~~~~ 103 (124)
T PF02662_consen 32 IRVPCSGRVDPEFILRA------FEKGADGVLVAGCHPGDCHYREGNYRAEKRVERLKKLLEELGIEPERVRLYWISA 103 (124)
T ss_pred EEccCCCccCHHHHHHH------HHcCCCEEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCChhHeEEEEeCc
Confidence 34445688886664332 5668888888776621111 01224566677777778888999999999887664
No 145
>PLN02381 valyl-tRNA synthetase
Probab=61.15 E-value=7.8 Score=43.80 Aligned_cols=44 Identities=30% Similarity=0.311 Sum_probs=29.6
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccce
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHA 121 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA 121 (318)
++.|.+|. -+||.+|+||.+.... -+.++++ |++|.+..|=.|+
T Consensus 129 ~f~i~~ppPy~nG~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~~ 177 (1066)
T PLN02381 129 PFVIVLPPPNVTGALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDHA 177 (1066)
T ss_pred cEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCCC
Confidence 46777776 6789999999886442 2444444 7888766665444
No 146
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=60.70 E-value=44 Score=33.56 Aligned_cols=73 Identities=10% Similarity=-0.016 Sum_probs=41.9
Q ss_pred CceEEE-eeCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee--cC-----CCCHHH-HHHHHHHHHHHHH
Q 021028 78 KKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI--TL-----PYDTQQ-LSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~--t~-----~~d~~~-i~~~~~~~~~~ll 143 (318)
..++|+ |-=|=+.+||||+.+.+. -+.++++ |++|.++.+ |.|.- +. ..++++ .+++...+.+++.
T Consensus 9 ~v~~YvCGpTvY~~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~~ 88 (384)
T PRK12418 9 TATMYVCGITPYDATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDME 88 (384)
T ss_pred eeEEEecCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 344543 333338899999887652 3444433 778765433 33311 11 124543 4556778888999
Q ss_pred HcCC-CCC
Q 021028 144 ACGI-DNS 150 (318)
Q Consensus 144 A~Gi-Dpe 150 (318)
++|+ .|+
T Consensus 89 ~Lni~~~~ 96 (384)
T PRK12418 89 ALRVLPPR 96 (384)
T ss_pred HhCCCCCC
Confidence 9997 554
No 147
>PLN02610 probable methionyl-tRNA synthetase
Probab=60.34 E-value=3.4 Score=45.16 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=32.4
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc
Q 021028 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~ 298 (318)
+.++|.|-..++.+.==..=. . .+..++.|..++.. ..+ .+ +| +|||||. +|.|+..
T Consensus 304 ~hfiGKDi~~fH~i~wPa~L~-a--------------~g~~~~~p~~i~~~--g~l-~~-eG-~KMSKS~---GNvV~p~ 360 (801)
T PLN02610 304 YQFMGKDNVPFHTVMFPSTLL-G--------------TGENWTMMKTISVT--EYL-NY-EG-GKFSKSK---GVGVFGN 360 (801)
T ss_pred EEEEeeecchhHHHHHHHHHH-h--------------CCCCcCCCCEEEec--cCE-ec-CC-ceecCcC---CcccCHH
Confidence 788999987776442211100 0 01123467666542 222 33 77 7999998 6788764
No 148
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=59.20 E-value=11 Score=39.71 Aligned_cols=45 Identities=24% Similarity=0.297 Sum_probs=26.1
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEE-ecccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI-VDLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilI-aD~hA~ 122 (318)
++.+..|. -+||.+|+||++.... -+.+++. |++|.+.. -|-|.+
T Consensus 24 ~f~i~~~PPy~nG~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G~D~~Gl 74 (601)
T PF00133_consen 24 KFFIHDPPPYANGDLHIGHALNKTIKDIIARYKRMQGYNVLFPPGWDCHGL 74 (601)
T ss_dssp EEEEEE---BTSSS-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEEEB--SH
T ss_pred cEEEEeCCCCCCCcccHHHHHHHHHHHHHHHHHHhCCcEeCCCCCcCCCCc
Confidence 46666666 6789999999886552 2444444 78876544 455555
No 149
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=58.42 E-value=7.3 Score=42.88 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=18.5
Q ss_pred ccccEEEecCcc-hHHHHHHHHHH
Q 021028 215 YQSDFVPVGEDQ-KQHLELTRELA 237 (318)
Q Consensus 215 ~~adivpvG~DQ-~~hi~l~Rdia 237 (318)
+-+|+.++|.|| .-|+-.+|-..
T Consensus 519 ~PvD~yi~G~dhailHLlyaRf~~ 542 (842)
T TIGR00396 519 LPVDLYIGGAEHAILHLLYARFWH 542 (842)
T ss_pred CCCcEeeccHHHHHHHHHHHHHHH
Confidence 459999999999 67777777755
No 150
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=56.41 E-value=8.4 Score=41.16 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=30.7
Q ss_pred EEEecCcchHHHHH---HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 219 FVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 219 ivpvG~DQ~~hi~l---~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
+.++|.|-..++.+ +.-++ .+ ++.|..++.. ..+. + +| +|||||. +|.|
T Consensus 287 v~~iGkDi~~fH~i~wpa~l~a--~g------------------~~lP~~v~~h--g~v~-~-~G-~KMSKS~---GNvV 338 (673)
T PRK00133 287 YHFIGKDIIYFHTLFWPAMLEG--AG------------------YRLPTNVFAH--GFLT-V-EG-AKMSKSR---GTFI 338 (673)
T ss_pred EEEEeecchhHHHHHHHHHHHh--CC------------------CCCCCEEeee--ccEE-e-cC-CcccccC---Cccc
Confidence 67789888775432 22222 11 3457665542 2332 3 66 8999998 6777
Q ss_pred ecc
Q 021028 296 NLL 298 (318)
Q Consensus 296 ~L~ 298 (318)
+..
T Consensus 339 ~p~ 341 (673)
T PRK00133 339 WAR 341 (673)
T ss_pred CHH
Confidence 654
No 151
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=55.71 E-value=9.7 Score=41.83 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=30.0
Q ss_pred CCceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
.++.++.|. -|+|.+|+||.+.... -+.++++ |++|.+..| |-|.+
T Consensus 36 ~~f~i~~~pPy~nG~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G~D~~Gl 87 (861)
T TIGR00392 36 PEFIFHDGPPYANGSIHLGHALNKILKDIILRYKTMQGFNVTRKPGWDTHGL 87 (861)
T ss_pred CCeEEecCCCCCCCCccHHHHHHHHHHHHHHHHHHcCCCccCCCCCcCCCcc
Confidence 357888887 4569999999886442 2445554 777765554 44443
No 152
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.15 E-value=20 Score=38.65 Aligned_cols=77 Identities=21% Similarity=0.249 Sum_probs=47.4
Q ss_pred CCCCCceEEEee-CCCCccchhhHHHH--HHHHHHHhc--cCcEEEEEeccceecCCC---------CH-HHHHHHHHHH
Q 021028 74 SSSVKKRIVSGV-QPTGSIHLGNYLGA--IKNWIALQN--SYETLFFIVDLHAITLPY---------DT-QQLSKATRET 138 (318)
Q Consensus 74 ~~~~~~~i~tGi-~PTG~lHLGhyvg~--l~~~~~LQ~--g~~v~ilIaD~hA~t~~~---------d~-~~i~~~~~~~ 138 (318)
.-..+++|++=| -|||.+|+||...- -..+.++|+ |++|+=-+ .|.|+=-|. ++ .-..+|+..+
T Consensus 54 d~sk~KYiLsMFPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPM-GWDaFGLPAENAAiergv~P~sWT~~NI~~M 132 (876)
T KOG0435|consen 54 DKSKKKYILSMFPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPM-GWDAFGLPAENAAIERGVHPASWTINNIAKM 132 (876)
T ss_pred ccCCCceEEEecCCCCCcccccceEEEEehHHHHHHHHhcCceeecCC-cccccCCchhhHHHhcCCCchhhhHHHHHHH
Confidence 333456888888 79999999996521 134556655 77776544 344543221 22 2345567777
Q ss_pred HHHHHHcCC--CCCc
Q 021028 139 AAIYLACGI--DNSK 151 (318)
Q Consensus 139 ~~~llA~Gi--Dpek 151 (318)
..++..+|+ |+|+
T Consensus 133 k~Ql~~lg~~FDWdr 147 (876)
T KOG0435|consen 133 KQQLKSLGISFDWDR 147 (876)
T ss_pred HHHHHHcCccccccc
Confidence 777777775 5554
No 153
>TIGR00018 panC pantoate--beta-alanine ligase. This family is pantoate--beta-alanine ligase, the last enzyme of pantothenate biosynthesis.
Probab=54.13 E-value=41 Score=32.45 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=25.5
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhh
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
.++|....|+--+|-+.+.|.+.+.+|
T Consensus 142 v~P~~a~FGeKD~QQl~vIrrmv~dL~ 168 (282)
T TIGR00018 142 VQPDVAYFGEKDAQQLAVIRKLVADLF 168 (282)
T ss_pred cCCCeeEecccHHHHHHHHHHHHHHcC
Confidence 389999999999999999999999988
No 154
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=51.88 E-value=3.1 Score=41.59 Aligned_cols=55 Identities=24% Similarity=0.228 Sum_probs=30.9
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc
Q 021028 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~ 298 (318)
+.++|.|-..++.+.=-..-. .. | ++.|..++.. ..+ -+ +| +|||||. ++.|+..
T Consensus 285 v~~iGkDi~~fH~i~~pa~l~-a~--~--------------~~lP~~i~~~--~~~-~~-~g-~K~SkS~---gn~i~~~ 339 (391)
T PF09334_consen 285 VHFIGKDIIRFHAIYWPAMLL-AA--G--------------LPLPRRIVVH--GFL-TL-DG-EKMSKSR---GNVIWPD 339 (391)
T ss_dssp EEEEEGGGHHHHHTHHHHHHH-HC--T--------------B---SEEEEE----E-EE-TT-CCEETTT---TESSBHH
T ss_pred EEEEccchhHHHHHHhHHHHh-cc--c--------------CCCCCEEEee--eeE-EE-CC-eeccccC---CcccCHH
Confidence 888999987776554222111 10 1 4567766642 223 34 77 7999998 6788764
No 155
>PRK00380 panC pantoate--beta-alanine ligase; Reviewed
Probab=49.58 E-value=44 Score=32.06 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.8
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhh
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNY 242 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~ 242 (318)
.++|....|..-.|.+.+-+++.+.++.
T Consensus 139 v~Pd~a~FG~kd~qq~~~l~~~~~~l~~ 166 (281)
T PRK00380 139 VQPDVAYFGEKDYQQLAVIRRMVADLNL 166 (281)
T ss_pred cCCCeeEECCCcchhHHHHHHHHHHcCC
Confidence 3799999999999999999999998773
No 156
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=48.89 E-value=11 Score=41.91 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=43.6
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------------CCCHHHHHHH----
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------------PYDTQQLSKA---- 134 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------------~~d~~~i~~~---- 134 (318)
++.+..|. -++|.+||||.+..+. -+.++++ |+++.+..| |-|.+-. ..+++++++.
T Consensus 50 ~f~i~~~pPyanG~lHiGHa~~~~~~Dii~Ry~rm~G~~v~~~~G~D~~Glpie~~~ek~l~~~~~~~~~~~f~~~c~~~ 129 (912)
T PRK05743 50 KFILHDGPPYANGDIHIGHALNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEKKLGKKGKKLSAAEFRKKCREY 129 (912)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHccCCcccCCCCcCCCccHhHHHHHHHcCCccccCCHHHHHHHHHHH
Confidence 45666665 5789999999886542 3555554 788765554 4443321 0133433332
Q ss_pred ----HHHHHHHHHHcCC--CCCc
Q 021028 135 ----TRETAAIYLACGI--DNSK 151 (318)
Q Consensus 135 ----~~~~~~~llA~Gi--Dpek 151 (318)
...+..++..+|+ |.++
T Consensus 130 ~~~~~~~~~~~~~~lG~~~dw~~ 152 (912)
T PRK05743 130 ALEQVDIQREDFKRLGVLGDWDN 152 (912)
T ss_pred HHHHHHHHHHHHHHhCCcccCCC
Confidence 2345667778898 7775
No 157
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=47.93 E-value=10 Score=39.13 Aligned_cols=66 Identities=23% Similarity=0.150 Sum_probs=36.3
Q ss_pred HhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccC
Q 021028 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (318)
Q Consensus 208 QaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSK 286 (318)
|+...|--.-||..+|.|-. ||+|- ++|+.... .|. +.+...+.. .++ .+ +| +||||
T Consensus 225 m~~~~lg~~~DIH~GG~DliFPHHen--e~Aqs~a~-~g~--------------~~~~~W~H~--g~l-~~-~g-~KMSK 282 (481)
T PRK14534 225 MNLEYFKSTLDIHLGGVDHIGVHHIN--EIAIAECY-LNK--------------KWCDMFVHG--EFL-IM-EY-EKMSK 282 (481)
T ss_pred HHHHHcCCcceEEecccccCCCcchh--HHHHHhhh-cCC--------------CcceEEEEe--cEE-Ee-cC-ceecc
Confidence 44444444579999999976 46554 33333221 121 113233321 122 23 66 89999
Q ss_pred CCCCCCCeEecc
Q 021028 287 SAPSDQSRINLL 298 (318)
Q Consensus 287 S~p~~~s~I~L~ 298 (318)
|. +|.|.+.
T Consensus 283 Sl---GN~i~l~ 291 (481)
T PRK14534 283 SN---NNFITIK 291 (481)
T ss_pred cC---CCcccHH
Confidence 98 6788773
No 158
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=47.71 E-value=12 Score=40.82 Aligned_cols=23 Identities=22% Similarity=0.141 Sum_probs=18.5
Q ss_pred ccccEEEecCcc-hHHHHHHHHHH
Q 021028 215 YQSDFVPVGEDQ-KQHLELTRELA 237 (318)
Q Consensus 215 ~~adivpvG~DQ-~~hi~l~Rdia 237 (318)
+-+|+.+.|.|| .-|+-.+|-..
T Consensus 522 ~P~Dly~~G~D~~i~hL~y~Rf~~ 545 (805)
T PRK00390 522 LPVDQYIGGIEHAVLHLLYARFFT 545 (805)
T ss_pred CCCcEEeccHHHHHHHHHHHHHHH
Confidence 459999999999 67777777554
No 159
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=47.15 E-value=9.5 Score=42.46 Aligned_cols=39 Identities=15% Similarity=0.106 Sum_probs=25.6
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEE
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI 116 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilI 116 (318)
++.+.++. -+||.+||||.+.... -+.++|+ |++|.+..
T Consensus 26 kf~i~~ppPy~nG~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~p~ 69 (938)
T TIGR00395 26 KFFLTMAYPYLNGVMHAGHCRTFTIPEVSARFERMKGKNVLFPL 69 (938)
T ss_pred ceEEecCCCCCCCCcccchhhhhhHHHHHHHHHHhcCCccCCCC
Confidence 45566665 5679999999886542 2445554 77776644
No 160
>PLN02943 aminoacyl-tRNA ligase
Probab=46.97 E-value=18 Score=40.51 Aligned_cols=44 Identities=23% Similarity=0.163 Sum_probs=28.1
Q ss_pred CceEEEe-eCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccce
Q 021028 78 KKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHA 121 (318)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA 121 (318)
++.+.+| =-+||.+|+||++.... -+.++++ |++|.+..+=.|+
T Consensus 89 ~f~i~~pPP~~tG~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~~ 137 (958)
T PLN02943 89 PFVIPMPPPNVTGSLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDHA 137 (958)
T ss_pred CEEEecCCCCCCCchhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCcc
Confidence 3566665 46789999999885442 2444443 8888765554444
No 161
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=46.72 E-value=30 Score=38.70 Aligned_cols=17 Identities=29% Similarity=0.370 Sum_probs=12.7
Q ss_pred ccEEEecCcchHHHHHH
Q 021028 217 SDFVPVGEDQKQHLELT 233 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~ 233 (318)
+|+..=|.||..---.+
T Consensus 556 aD~~lEGsDQ~RGWF~S 572 (933)
T COG0060 556 ADFYLEGSDQTRGWFYS 572 (933)
T ss_pred CcEEEEeccccchhHHH
Confidence 59999999997544333
No 162
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=45.98 E-value=17 Score=41.66 Aligned_cols=16 Identities=31% Similarity=0.623 Sum_probs=13.5
Q ss_pred ccccEEEecCcchHHH
Q 021028 215 YQSDFVPVGEDQKQHL 230 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi 230 (318)
+-+|+.+=|.||....
T Consensus 672 fPaD~i~eG~Dq~rgW 687 (1205)
T PTZ00427 672 FPADFIAEGLDQTRGW 687 (1205)
T ss_pred CCceEEEEecchhccH
Confidence 4699999999998755
No 163
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=41.22 E-value=22 Score=39.85 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=29.5
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.++.|. -+||.+|+||.+.... -+.+++. |++|....| |-|.+
T Consensus 42 ~f~i~~~PPy~nG~lH~GH~l~~t~kD~i~Ry~rm~G~~v~~~~GwD~~Gl 92 (975)
T PRK06039 42 EFVFYDGPPTANGLPHYGHLLTRTIKDVVPRYKTMKGYKVERRAGWDTHGL 92 (975)
T ss_pred CEEEeCCCCCCCCCccHhhhHhhHHHHHHHHHHHhCCCcccCcCCcCCCcc
Confidence 56777777 6789999999885442 2444443 777765544 54444
No 164
>PLN02959 aminoacyl-tRNA ligase
Probab=40.46 E-value=15 Score=41.62 Aligned_cols=29 Identities=24% Similarity=0.248 Sum_probs=19.2
Q ss_pred CCCccchhhHHHHHHH--HHHHhc--cCcEEEE
Q 021028 87 PTGSIHLGNYLGAIKN--WIALQN--SYETLFF 115 (318)
Q Consensus 87 PTG~lHLGhyvg~l~~--~~~LQ~--g~~v~il 115 (318)
++|.+||||.+....+ ..++|+ |++|.+.
T Consensus 56 ~NG~lHiGHa~t~t~~D~i~Rykrm~G~~vlfp 88 (1084)
T PLN02959 56 MNGLLHLGHAFSLSKLEFAAAYHRLRGANVLLP 88 (1084)
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHcCCCccCCC
Confidence 4699999998865532 445555 6666544
No 165
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=40.07 E-value=26 Score=40.30 Aligned_cols=45 Identities=20% Similarity=0.151 Sum_probs=29.1
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.++.|- -+||.+|+||.+.... -+.+++. |++|.+..+ |-|.+
T Consensus 103 ~Fv~~~gPPyanG~lHiGHal~~tikDii~Ry~rm~G~~V~~~~GwD~hGl 153 (1205)
T PTZ00427 103 AYIFYDGPPFATGLPHYGHLLAGIIKDCVTRYFYQCGFSVERKFGWDCHGL 153 (1205)
T ss_pred cEEEecCCCCCCCCcchhHHHHHHHHHHHHHHHHcCCCeeccCCccCCCCc
Confidence 46667776 5779999999885442 2444443 788876544 44444
No 166
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=39.38 E-value=19 Score=40.32 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=29.0
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.+..|. -++|.+|+||.+..+. -+.+++. |+++.+..+ |-|.+
T Consensus 55 ~f~l~dgPPyanG~lHiGHaln~~lkDii~Ry~rm~G~~v~~~pGwD~hGl 105 (961)
T PRK13804 55 KFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGL 105 (961)
T ss_pred cEEEeCCCCCCCCCccHHHHHHHHHHHHHHHHHHhcCCcccCCCCcCCCCc
Confidence 46677776 5779999999886542 2445544 777755444 55544
No 167
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=37.01 E-value=2.1e+02 Score=30.73 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=41.9
Q ss_pred CCceEEEeeCCC--CccchhhHHHHHH--HHHH-Hh--ccCcEEEEEe-ccce--ecC-----CCC-HH-HHHHHHHHHH
Q 021028 77 VKKRIVSGVQPT--GSIHLGNYLGAIK--NWIA-LQ--NSYETLFFIV-DLHA--ITL-----PYD-TQ-QLSKATRETA 139 (318)
Q Consensus 77 ~~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~-LQ--~g~~v~ilIa-D~hA--~t~-----~~d-~~-~i~~~~~~~~ 139 (318)
..+++|+ -.|| +.+||||+...+. -+++ |+ .|++|.++.. |.|. ++. ..+ +. -.+.+...+.
T Consensus 59 ~~v~~Y~-CGPTvYd~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~ 137 (651)
T PTZ00399 59 RQVRWYT-CGPTVYDSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFF 137 (651)
T ss_pred CeeEEEE-eCCCccCCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3445543 2466 7899999776542 2333 34 2788765432 2211 110 124 43 3455677888
Q ss_pred HHHHHcCCCCCc
Q 021028 140 AIYLACGIDNSK 151 (318)
Q Consensus 140 ~~llA~GiDpek 151 (318)
+++.++||.+..
T Consensus 138 ~d~~~Lni~~p~ 149 (651)
T PTZ00399 138 EDMKALNVRPPD 149 (651)
T ss_pred HHHHHcCCCCCc
Confidence 899999997653
No 168
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.70 E-value=15 Score=38.74 Aligned_cols=31 Identities=26% Similarity=0.450 Sum_probs=19.7
Q ss_pred cCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccC
Q 021028 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD 299 (318)
Q Consensus 261 ~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D 299 (318)
+.|..++.. -.--+ +| +|||||. ++.|+..|
T Consensus 316 ~lP~~i~ah---g~l~~-~G-~KmSKSr---G~~V~~~~ 346 (558)
T COG0143 316 PLPTRIFAH---GFLTL-EG-QKMSKSR---GNVVDPDE 346 (558)
T ss_pred CCCCEEEee---eeEEE-CC-ccccccC---CcEEeHHH
Confidence 356666542 12223 66 7999998 68887654
No 169
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=36.20 E-value=1.3e+02 Score=25.70 Aligned_cols=90 Identities=17% Similarity=0.197 Sum_probs=53.1
Q ss_pred eeccCCCCCCCCCCCCCCCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEE----EeccceecCCCCHHHHHHHH
Q 021028 60 CNVSLSEPTAPVASSSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFF----IVDLHAITLPYDTQQLSKAT 135 (318)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~il----IaD~hA~t~~~d~~~i~~~~ 135 (318)
|+-.+++.+.-.--+-|...|| +-+.=||++..- .-+..|++|.+-+++ ++|-|=..+++ +.+++.
T Consensus 11 csygaaDlag~~rmqyp~~vRi-Irv~CsGrvn~~------fvl~Al~~GaDGV~v~GC~~geCHy~~GN~---ka~rR~ 80 (132)
T COG1908 11 CSYGAADLAGTSRMQYPPNVRI-IRVMCSGRVNPE------FVLKALRKGADGVLVAGCKIGECHYISGNY---KAKRRM 80 (132)
T ss_pred ccccchhhhccccccCCCceEE-EEeeccCccCHH------HHHHHHHcCCCeEEEecccccceeeeccch---HHHHHH
Confidence 3344444444333344434444 445667876632 234457888775543 55666555544 344455
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCC
Q 021028 136 RETAAIYLACGIDNSKASVFVQSH 159 (318)
Q Consensus 136 ~~~~~~llA~GiDpek~~i~~qS~ 159 (318)
+...+.+.-+||+|+++.++|-|.
T Consensus 81 ~~lke~l~elgie~eRv~~~wiSa 104 (132)
T COG1908 81 ELLKELLKELGIEPERVRVLWISA 104 (132)
T ss_pred HHHHHHHHHhCCCcceEEEEEEeh
Confidence 555666777899999999988774
No 170
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=33.61 E-value=1.9e+02 Score=25.61 Aligned_cols=66 Identities=20% Similarity=0.187 Sum_probs=30.5
Q ss_pred eCCCCccchhhHHHHHHHHHHHhccCc-EEEEEeccc-eec--CCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCc
Q 021028 85 VQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLH-AIT--LPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHV 160 (318)
Q Consensus 85 i~PTG~lHLGhyvg~l~~~~~LQ~g~~-v~ilIaD~h-A~t--~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~ 160 (318)
|+| +|+||... +....+ .++ ++|+++.-. ... ++.+.++..+.. .+.+...+++.+++.++.-.|.
T Consensus 9 F~P---~H~GHl~~-i~~a~~---~~d~v~v~i~s~~~~~~~~~p~~~~~R~~mi---~~a~~~~~~~~~~~~~~pi~D~ 78 (174)
T PRK01153 9 FQP---FHKGHLEV-IKWILE---EVDELIIGIGSAQESHTLKNPFTAGERILMI---RKALEEEGIDLSRYYIIPIPDI 78 (174)
T ss_pred cCC---CCHHHHHH-HHHHHH---hCCEEEEEecCCCCCCCCCCCCCHHHHHHHH---HHHHhcCCCCcceeeEecCCCc
Confidence 566 99999754 333322 344 556565332 222 123333222222 2223334665556655543443
No 171
>PLN02882 aminoacyl-tRNA ligase
Probab=32.14 E-value=31 Score=39.53 Aligned_cols=45 Identities=20% Similarity=0.132 Sum_probs=29.3
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.++.|- -+||.+|+||.+.... -+.+++. |++|.+..| |-|.+
T Consensus 39 ~f~~~dgPPyanG~~HiGH~~~~~ikDii~Ry~rm~G~~V~~~~GwD~hGl 89 (1159)
T PLN02882 39 EYIFYDGPPFATGLPHYGHILAGTIKDIVTRYQSMTGHHVTRRFGWDCHGL 89 (1159)
T ss_pred CEEEeCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCCcccccCccCCCCc
Confidence 46777776 5779999999885442 2444544 788765444 55554
No 172
>COG4320 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.18 E-value=43 Score=33.26 Aligned_cols=26 Identities=42% Similarity=0.783 Sum_probs=19.3
Q ss_pred CccchhhHHHHHHHHHHHhccCcEEEEEeccc
Q 021028 89 GSIHLGNYLGAIKNWIALQNSYETLFFIVDLH 120 (318)
Q Consensus 89 G~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~h 120 (318)
|..||||| ++.++ ....|+|-|+|+.
T Consensus 63 GD~HLgN~-ga~~~-----~~G~V~f~i~DFD 88 (410)
T COG4320 63 GDAHLGNF-GAARN-----SKGNVVFKIADFD 88 (410)
T ss_pred cccccccc-hhhcc-----CCCceEEEecccc
Confidence 78999997 55322 2468999999974
No 173
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=30.40 E-value=40 Score=37.46 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=25.8
Q ss_pred CCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccceecC
Q 021028 88 TGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLHAITL 124 (318)
Q Consensus 88 TG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~hA~t~ 124 (318)
||.+||||.+++-. ...++++ |.++...-+=.||=+.
T Consensus 87 TG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~PG~DHAGIA 127 (995)
T KOG0432|consen 87 TGSLHIGHALTVAIQDALARYNRMHGYQVLWVPGTDHAGIA 127 (995)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhcCCeeeecCCccccchh
Confidence 79999999886432 2334433 6778788888888763
No 174
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.67 E-value=20 Score=39.73 Aligned_cols=20 Identities=60% Similarity=0.765 Sum_probs=13.6
Q ss_pred CCCCCccCCCCCCCCeEeccCCHHHHH
Q 021028 279 DGLSKMSKSAPSDQSRINLLDPKDVIA 305 (318)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D~pe~I~ 305 (318)
+| +|||||. ||-| |+-+.|.
T Consensus 522 ~G-~KMSKS~---GNvI---DP~d~I~ 541 (877)
T COG0525 522 QG-RKMSKSK---GNVI---DPLDVID 541 (877)
T ss_pred CC-CCCcccC---CCcC---CHHHHHH
Confidence 56 8999998 5666 4444444
No 175
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=28.31 E-value=71 Score=30.67 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.6
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhh
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
++|....|..-.+.+.+-|++++.++
T Consensus 141 ~Pd~~~FG~kd~gq~~~Lk~~~~dl~ 166 (277)
T cd00560 141 QPDRAYFGEKDAQQLAVIRRMVRDLN 166 (277)
T ss_pred CCCeEEECCCccccHHHHHHHHHHcC
Confidence 78988899999999999999999876
No 176
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=27.52 E-value=20 Score=38.65 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=23.3
Q ss_pred hHHHhhhhhcccccEEEecCcc-hHHHHHHHHHHHH
Q 021028 205 PVLMASDILLYQSDFVPVGEDQ-KQHLELTRELAER 239 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ-~~hi~l~Rdia~k 239 (318)
..-|+...|--.-||--||.|- .||+|= ++|+-
T Consensus 435 CSAMs~~~LG~~~DIHgGG~DLiFPHHEN--EiAQs 468 (699)
T PRK14535 435 CSAMSENLFGDTFDIHGGGADLQFPHHEN--EIAQS 468 (699)
T ss_pred HHHHHHHHcCCcceeECCccccCCCCCcc--HHHHH
Confidence 3566666666678999999995 467764 55554
No 177
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=26.01 E-value=3.6e+02 Score=26.27 Aligned_cols=70 Identities=21% Similarity=0.368 Sum_probs=35.3
Q ss_pred ceEEEe-eCCCCccchhhHHHHHHHHHHHhccCcEEEEEecc---ceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDL---HAITLPYDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 79 ~~i~tG-i~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~---hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
.-+|.| |+| +|+||... ++...+ ..-+++|+++.. |..-++.+.++..+.++.. ++ +++..++.|
T Consensus 8 ~~~~~G~F~P---~H~GHl~~-i~~a~~--~~d~l~v~i~s~~~~~~~~~~~~~~~R~~mi~~~----~~-~~~~~r~~~ 76 (340)
T PRK05379 8 YLVFIGRFQP---FHNGHLAV-IREALS--RAKKVIVLIGSADLARSIKNPFSFEERAQMIRAA----LA-GIDLARVTI 76 (340)
T ss_pred EEEEeeccCC---CCHHHHHH-HHHHHH--HCCEEEEEEccCCCCCcCCCCCCHHHHHHHHHHH----hh-cCCCceEEE
Confidence 445555 577 89999754 334322 223577888632 2222233444433333222 22 666666665
Q ss_pred EEcCC
Q 021028 155 FVQSH 159 (318)
Q Consensus 155 ~~qS~ 159 (318)
+-=.|
T Consensus 77 ~pi~d 81 (340)
T PRK05379 77 RPLRD 81 (340)
T ss_pred EECCC
Confidence 54333
No 178
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=25.19 E-value=4e+02 Score=26.04 Aligned_cols=69 Identities=26% Similarity=0.185 Sum_probs=38.8
Q ss_pred hHHHhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCcc-ccCCCCcccccCCCCCC
Q 021028 205 PVLMASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEP-LIPPAGARVMSLTDGLS 282 (318)
Q Consensus 205 PlLQaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~-ll~~~~~~lp~L~dg~~ 282 (318)
..-|+...|-..-||--+|.|-. ||+|=-+-.++-.. |... -.. +++ .+| .+ +| +
T Consensus 195 Csam~~~~lG~~~DIH~GG~DL~FPHHENEiAqs~a~~---g~~~--------------a~~W~H~---g~l-~~-~g-~ 251 (300)
T PF01406_consen 195 CSAMSMKYLGDTFDIHGGGIDLIFPHHENEIAQSEAAT---GKPF--------------ANYWMHN---GHL-NV-DG-E 251 (300)
T ss_dssp HHHHHHHHHTTSEEEEEEEGGGTTTHHHHHHHHHHHHH---SS-S--------------EEEEEEE-----E-EE-TT-C
T ss_pred hHHHHHHHcCCCceEEccccccCCCCccchHHHHHHhh---CchH--------------HHHHHHH---HHH-hh-cC-c
Confidence 35677788878899999999975 78876555555433 2110 111 332 222 22 66 8
Q ss_pred CccCCCCCCCCeEeccC
Q 021028 283 KMSKSAPSDQSRINLLD 299 (318)
Q Consensus 283 KMSKS~p~~~s~I~L~D 299 (318)
|||||. +|.|.+.|
T Consensus 252 KMSKSl---gN~~~i~d 265 (300)
T PF01406_consen 252 KMSKSL---GNFITIRD 265 (300)
T ss_dssp E--TTT---T---BHHH
T ss_pred cccccC---CCEEEHHH
Confidence 999998 67887754
No 179
>PLN02413 choline-phosphate cytidylyltransferase
Probab=25.12 E-value=2e+02 Score=28.05 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=20.2
Q ss_pred CCCCCCCCCCCceEEEeeCCCCc---cchhhHHHHHHHHHH
Q 021028 68 TAPVASSSSVKKRIVSGVQPTGS---IHLGNYLGAIKNWIA 105 (318)
Q Consensus 68 ~~~~~~~~~~~~~i~tGi~PTG~---lHLGhyvg~l~~~~~ 105 (318)
.++.++...++.++|+- |- +|.||+-. |.....
T Consensus 17 ~~~~~~~~~r~~rVyvd----G~FDLfH~GHir~-L~qAK~ 52 (294)
T PLN02413 17 ATPSSSPSDRPVRVYAD----GIYDLFHFGHARS-LEQAKK 52 (294)
T ss_pred CCCCCCCCCCceEEEEe----CchhhCCHHHHHH-HHHHHH
Confidence 33444455567788864 53 99999643 545544
No 180
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=24.09 E-value=3.7e+02 Score=21.56 Aligned_cols=33 Identities=12% Similarity=-0.008 Sum_probs=15.8
Q ss_pred ccchhhHHHHHHHHHHHhccCcEEEEEeccceec
Q 021028 90 SIHLGNYLGAIKNWIALQNSYETLFFIVDLHAIT 123 (318)
Q Consensus 90 ~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t 123 (318)
++|.||... +....+.-+.-.++++.+|....-
T Consensus 8 P~H~GH~~~-l~~a~~~~~~~~vi~v~~~~~~~k 40 (157)
T PF01467_consen 8 PPHNGHLNL-LREARELFDEDLVIVVPSDNSPHK 40 (157)
T ss_dssp T--HHHHHH-HHHHHHHSSESEEEEEEEEHHCHS
T ss_pred cccHHHHHH-HHHHHHhccccccccccccccccc
Confidence 399999754 444433221112566666665554
No 181
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=23.81 E-value=35 Score=35.65 Aligned_cols=35 Identities=37% Similarity=0.247 Sum_probs=26.2
Q ss_pred hhhHHHhhhhhcccccEEEecCcch-HHHHHHHHHHHH
Q 021028 203 TYPVLMASDILLYQSDFVPVGEDQK-QHLELTRELAER 239 (318)
Q Consensus 203 ~YPlLQaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k 239 (318)
+=...||+|+|-.+-||--||.|-. ||++ .|||+-
T Consensus 245 IECSaMas~~lG~~lDIH~GG~DL~FPHHe--NEiAQ~ 280 (586)
T KOG2007|consen 245 IECSAMASAILGSQLDIHGGGIDLAFPHHE--NEIAQS 280 (586)
T ss_pred eeeHHHHHHhhccccceecCcccccCCCcc--cHHHHH
Confidence 3456899999999999999999975 4553 344443
No 182
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=22.27 E-value=3e+02 Score=25.18 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=39.0
Q ss_pred ceEEEe-eCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC---CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 79 KRIVSG-VQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL---PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 79 ~~i~tG-i~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~---~~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
.-+|.| ||| +|+||.-. ++.. +...-+++|.|+-...-.. |....+.....+.... ..|..|+.|
T Consensus 6 ~~v~iGRFQP---fH~GHl~~-I~~a--l~~~devII~IGSA~~s~t~~NPFTa~ER~~MI~~aL~-----e~~~~rv~~ 74 (196)
T PRK13793 6 YLVFIGRFQP---FHLAHMQT-IEIA--LQQSRYVILALGSAQMERNIKNPFLAIEREQMILSNFS-----LDEQKRIRF 74 (196)
T ss_pred EEEEEecCCC---CcHHHHHH-HHHH--HHhCCEEEEEEccCCCCCCCCCCCCHHHHHHHHHHhcc-----hhhcceEEE
Confidence 456677 588 89999743 4333 2222267888776443333 3333333332222211 124456655
Q ss_pred EEcCCchhhhHHHHH
Q 021028 155 FVQSHVRAHVELMWL 169 (318)
Q Consensus 155 ~~qS~~~~~~el~w~ 169 (318)
.--.|+ +.+..|.
T Consensus 75 ipi~D~--~~~~~Wv 87 (196)
T PRK13793 75 VHVVDV--YNDEKWV 87 (196)
T ss_pred EecCCc--cchhHHH
Confidence 554454 3455675
No 183
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.32 E-value=1.8e+02 Score=29.72 Aligned_cols=21 Identities=14% Similarity=0.596 Sum_probs=17.1
Q ss_pred HHHHHHhccCcEEEEEeccceec
Q 021028 101 KNWIALQNSYETLFFIVDLHAIT 123 (318)
Q Consensus 101 ~~~~~LQ~g~~v~ilIaD~hA~t 123 (318)
..| |.+.++.+|++=|-|++-
T Consensus 175 ~~W--FaeR~D~IiLlfD~hKLD 195 (532)
T KOG1954|consen 175 LEW--FAERVDRIILLFDAHKLD 195 (532)
T ss_pred HHH--HHHhccEEEEEechhhcc
Confidence 366 667789999999999984
Done!