Query 021028
Match_columns 318
No_of_seqs 130 out of 1440
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 11:41:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021028.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021028hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n9i_A Tryptophanyl-tRNA synth 100.0 2.6E-68 8.9E-73 514.9 20.8 229 76-317 13-241 (346)
2 3prh_A Tryptophanyl-tRNA synth 100.0 4.6E-68 1.6E-72 519.6 21.8 225 78-316 35-259 (388)
3 3sz3_A Tryptophanyl-tRNA synth 100.0 1.8E-68 6.2E-73 515.3 18.0 229 78-316 6-234 (341)
4 2yy5_A Tryptophanyl-tRNA synth 100.0 3.5E-65 1.2E-69 493.8 20.1 227 78-316 4-235 (348)
5 1i6k_A TRPRS, tryptophanyl-tRN 100.0 1.4E-64 4.8E-69 486.1 22.4 224 79-316 2-225 (328)
6 3tzl_A Tryptophanyl-tRNA synth 100.0 2E-64 7E-69 483.9 20.9 220 78-316 3-222 (322)
7 1yi8_B Tryptophanyl-tRNA synth 100.0 5.3E-63 1.8E-67 479.0 22.3 224 76-316 20-245 (351)
8 2el7_A Tryptophanyl-tRNA synth 100.0 3.1E-62 1.1E-66 471.3 21.9 220 79-316 2-225 (337)
9 2g36_A Tryptophanyl-tRNA synth 100.0 1.1E-61 3.8E-66 468.0 19.1 220 77-316 11-235 (340)
10 3vgj_A Tyrosyl-tRNA synthetase 100.0 6.4E-57 2.2E-61 439.5 19.1 215 77-316 55-278 (373)
11 2j5b_A Tyrosyl-tRNA synthetase 100.0 3.3E-57 1.1E-61 438.0 14.7 213 77-316 39-263 (348)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 2.1E-57 7E-62 443.3 12.7 218 77-316 32-282 (375)
13 3jxe_A Tryptophanyl-tRNA synth 100.0 1.3E-56 4.3E-61 439.6 16.9 207 77-316 72-285 (392)
14 2cya_A Tyrosyl-tRNA synthetase 100.0 1.4E-56 4.7E-61 436.0 15.7 213 77-316 34-269 (364)
15 3a04_A Tryptophanyl-tRNA synth 100.0 1.4E-55 5E-60 429.9 17.7 207 77-316 69-287 (372)
16 3p0j_A Tyrosyl-tRNA synthetase 100.0 3.9E-53 1.3E-57 439.8 17.6 214 77-316 39-261 (690)
17 2cyb_A Tyrosyl-tRNA synthetase 100.0 1.7E-52 5.7E-57 400.9 18.0 209 77-316 31-244 (323)
18 3hzr_A Tryptophanyl-tRNA synth 100.0 3.4E-52 1.2E-56 407.5 16.8 206 77-316 81-301 (386)
19 3tze_A Tryptophanyl-tRNA synth 100.0 6.9E-52 2.4E-56 407.5 16.2 207 76-316 99-321 (406)
20 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.3E-51 4.5E-56 401.9 17.9 211 77-316 34-253 (372)
21 2zp1_A Tyrosyl-tRNA synthetase 100.0 7.7E-52 2.6E-56 395.4 15.7 202 77-316 27-234 (314)
22 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.5E-51 5.2E-56 394.6 16.1 207 77-311 32-263 (322)
23 2dlc_X Tyrosyl-tRNA synthetase 100.0 2.8E-51 9.7E-56 402.3 16.1 212 77-316 38-258 (394)
24 2ip1_A Tryptophanyl-tRNA synth 100.0 2E-50 6.7E-55 400.3 16.8 206 77-316 101-327 (432)
25 1r6u_A Tryptophanyl-tRNA synth 100.0 3.3E-50 1.1E-54 398.8 14.4 204 77-315 107-333 (437)
26 3foc_A Tryptophanyl-tRNA synth 100.0 2.9E-50 9.9E-55 399.8 13.9 207 77-316 90-365 (451)
27 2jan_A Tyrosyl-tRNA synthetase 100.0 1.1E-49 3.7E-54 394.6 16.7 206 77-311 31-260 (432)
28 3hv0_A Tryptophanyl-tRNA synth 100.0 5.4E-50 1.9E-54 392.8 14.4 206 77-316 73-298 (393)
29 3i05_A Tryptophanyl-tRNA synth 100.0 5.8E-50 2E-54 392.8 13.8 205 77-316 77-301 (395)
30 1h3f_A Tyrosyl-tRNA synthetase 100.0 1.8E-49 6.1E-54 393.4 17.3 209 77-314 36-260 (432)
31 1r6t_A Tryptophanyl-tRNA synth 100.0 9.8E-50 3.4E-54 399.5 15.2 204 77-315 154-380 (477)
32 2pid_A Tyrosyl-tRNA synthetase 100.0 1.8E-49 6E-54 385.0 14.7 205 77-311 45-282 (356)
33 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 7.4E-48 2.5E-52 380.7 19.7 203 77-311 31-259 (420)
34 2ts1_A Tyrosyl-tRNA synthetase 100.0 1.8E-48 6.1E-53 384.8 13.6 204 77-311 29-258 (419)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 3.5E-47 1.2E-51 373.0 19.1 221 77-315 63-324 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 8.1E-40 2.8E-44 339.9 16.3 206 74-315 378-594 (690)
37 1nzj_A Hypothetical protein YA 99.4 1.6E-13 5.5E-18 129.9 5.1 186 85-303 12-246 (298)
38 2ja2_A Glutamyl-tRNA synthetas 99.3 1.3E-12 4.4E-17 131.5 6.4 179 86-289 14-263 (498)
39 1j09_A Glutamyl-tRNA synthetas 99.3 1.6E-12 5.3E-17 130.1 6.1 174 86-289 9-249 (468)
40 3afh_A Glutamyl-tRNA synthetas 99.3 1.2E-12 4.1E-17 131.5 2.5 198 79-310 26-284 (488)
41 2cfo_A Glutamyl-tRNA synthetas 99.1 6E-10 2.1E-14 112.0 14.9 176 84-289 7-253 (492)
42 3al0_C Glutamyl-tRNA(Gln) amid 99.1 6.1E-12 2.1E-16 129.0 0.1 199 79-310 130-388 (592)
43 2o5r_A Glutamyl-tRNA synthetas 98.7 1.9E-08 6.6E-13 100.8 9.4 182 79-289 14-268 (481)
44 4g6z_A Glutamate-tRNA ligase; 98.7 7.5E-08 2.6E-12 96.7 13.3 181 78-289 25-270 (490)
45 4gri_A Glutamate--tRNA ligase; 98.6 1E-07 3.4E-12 96.3 10.5 180 80-289 24-279 (512)
46 3aii_A Glutamyl-tRNA synthetas 98.6 3.4E-07 1.2E-11 93.0 12.2 175 81-288 97-334 (553)
47 1qtq_A GLNRS, protein (glutami 98.4 6.7E-07 2.3E-11 90.9 8.8 94 79-180 27-130 (553)
48 2hz7_A Glutaminyl-tRNA synthet 98.2 7.9E-06 2.7E-10 86.6 13.5 94 79-180 67-170 (851)
49 1iq0_A Arginyl-tRNA synthetase 97.3 0.00017 6E-09 73.7 4.9 41 79-119 106-152 (592)
50 3tqo_A Cysteinyl-tRNA syntheta 96.6 0.0068 2.3E-07 60.4 9.7 75 77-151 24-112 (462)
51 2zue_A Arginyl-tRNA synthetase 96.4 0.0027 9.2E-08 65.4 5.6 27 216-242 377-403 (629)
52 1irx_A Lysyl-tRNA synthetase; 95.6 0.012 4.2E-07 59.0 5.8 79 78-159 21-129 (523)
53 3u1f_A Methionyl-tRNA syntheta 95.2 0.048 1.7E-06 54.4 8.5 75 77-151 9-97 (542)
54 3h99_A Methionyl-tRNA syntheta 94.7 0.16 5.4E-06 51.1 10.8 80 78-159 19-112 (560)
55 4dlp_A Aminoacyl-tRNA syntheta 94.4 0.25 8.7E-06 49.3 11.4 79 79-159 26-119 (536)
56 3kfl_A Methionyl-tRNA syntheta 94.1 0.31 1E-05 49.2 11.4 81 77-159 26-120 (564)
57 2csx_A Methionyl-tRNA syntheta 93.3 0.36 1.2E-05 47.6 10.0 79 79-159 6-99 (497)
58 2d5b_A Methionyl-tRNA syntheta 93.1 0.49 1.7E-05 46.6 10.6 79 79-159 4-97 (500)
59 1rqg_A Methionyl-tRNA syntheta 93.0 0.37 1.3E-05 50.2 10.0 74 78-151 3-91 (722)
60 2d5b_A Methionyl-tRNA syntheta 91.4 0.097 3.3E-06 51.7 3.1 14 215-228 250-263 (500)
61 2x1l_A Methionyl-tRNA syntheta 91.1 0.94 3.2E-05 44.9 9.9 72 86-159 22-106 (524)
62 2csx_A Methionyl-tRNA syntheta 90.5 0.099 3.4E-06 51.7 2.2 56 216-297 250-306 (497)
63 1li5_A Cysrs, cysteinyl-tRNA s 89.5 0.7 2.4E-05 45.6 7.4 82 77-160 21-117 (461)
64 3c8z_A Cysteinyl-tRNA syntheta 89.0 1.9 6.6E-05 41.7 10.0 81 78-160 39-134 (414)
65 3u1f_A Methionyl-tRNA syntheta 88.8 0.18 6.1E-06 50.3 2.6 15 216-230 278-292 (542)
66 4arc_A Leucine--tRNA ligase; l 87.0 1.9 6.4E-05 46.1 9.1 73 78-150 54-140 (880)
67 2x1l_A Methionyl-tRNA syntheta 86.4 0.21 7.2E-06 49.6 1.4 15 215-229 264-278 (524)
68 3kfl_A Methionyl-tRNA syntheta 86.1 0.23 7.9E-06 50.1 1.5 55 215-297 293-350 (564)
69 1wkb_A Leucyl-tRNA synthetase; 85.2 0.41 1.4E-05 50.3 3.0 60 215-298 602-662 (810)
70 3fnr_A Arginyl-tRNA synthetase 84.6 0.2 6.7E-06 49.8 0.2 40 82-121 36-81 (464)
71 3c8z_A Cysteinyl-tRNA syntheta 84.6 0.37 1.3E-05 46.8 2.1 29 208-236 236-265 (414)
72 1gax_A Valrs, valyl-tRNA synth 84.2 2.3 7.8E-05 45.3 8.2 45 78-122 35-85 (862)
73 3sp1_A Cysteinyl-tRNA syntheta 84.2 3.5 0.00012 41.3 9.0 74 78-151 42-139 (501)
74 4dlp_A Aminoacyl-tRNA syntheta 83.0 0.46 1.6E-05 47.5 2.1 14 216-229 276-289 (536)
75 1wz2_A Leucyl-tRNA synthetase; 82.8 0.6 2E-05 50.2 3.0 60 215-298 602-662 (967)
76 1li5_A Cysrs, cysteinyl-tRNA s 82.7 0.7 2.4E-05 45.6 3.3 66 208-298 212-278 (461)
77 1ffy_A Isoleucyl-tRNA syntheta 82.0 0.63 2.1E-05 49.9 2.8 24 214-237 546-572 (917)
78 1ile_A Ilers, isoleucyl-tRNA s 81.3 0.66 2.2E-05 48.9 2.6 14 215-228 543-556 (821)
79 3h99_A Methionyl-tRNA syntheta 80.5 0.61 2.1E-05 46.8 1.9 15 279-297 342-356 (560)
80 2v0c_A Aminoacyl-tRNA syntheta 79.6 2.8 9.6E-05 44.6 6.8 73 78-150 34-120 (878)
81 1wkb_A Leucyl-tRNA synthetase; 76.1 3.1 0.00011 43.6 5.8 45 78-122 35-85 (810)
82 1gax_A Valrs, valyl-tRNA synth 75.5 0.86 2.9E-05 48.5 1.4 59 215-297 480-539 (862)
83 1ffy_A Isoleucyl-tRNA syntheta 74.6 3.6 0.00012 44.0 5.9 74 78-151 49-150 (917)
84 3sp1_A Cysteinyl-tRNA syntheta 73.7 1.6 5.6E-05 43.7 2.8 28 207-234 244-272 (501)
85 4arc_A Leucine--tRNA ligase; l 70.9 2.1 7.1E-05 45.8 3.0 25 215-239 542-567 (880)
86 1f7u_A Arginyl-tRNA synthetase 68.6 3.4 0.00012 42.2 3.8 38 82-119 149-192 (607)
87 3fnr_A Arginyl-tRNA synthetase 66.5 3.9 0.00013 40.4 3.7 26 216-241 234-261 (464)
88 1irx_A Lysyl-tRNA synthetase; 64.2 1.8 6.1E-05 43.2 0.8 58 215-297 229-290 (523)
89 1ile_A Ilers, isoleucyl-tRNA s 62.1 3.7 0.00013 43.2 2.7 45 78-122 39-89 (821)
90 3cov_A Pantothenate synthetase 61.5 7.2 0.00024 36.6 4.3 26 216-241 152-177 (301)
91 1wz2_A Leucyl-tRNA synthetase; 59.6 4.2 0.00014 43.7 2.7 39 77-115 34-77 (967)
92 2v0c_A Aminoacyl-tRNA syntheta 50.0 7.3 0.00025 41.4 2.6 24 215-238 530-554 (878)
93 3oqi_A YVMC, putative uncharac 46.7 70 0.0024 29.2 8.2 82 77-162 28-122 (257)
94 3foc_A Tryptophanyl-tRNA synth 45.1 3.8 0.00013 40.5 -0.5 17 216-232 221-249 (451)
95 1f7u_A Arginyl-tRNA synthetase 33.7 18 0.00061 36.9 2.3 27 216-242 363-391 (607)
96 1rqg_A Methionyl-tRNA syntheta 33.4 6.9 0.00024 40.6 -0.8 30 261-298 327-356 (722)
97 3uk2_A Pantothenate synthetase 32.3 16 0.00056 33.9 1.6 27 215-241 140-166 (283)
98 3oqv_A ALBC; rossman fold, cyc 32.2 76 0.0026 28.8 6.0 84 77-162 28-124 (247)
99 4erh_A Outer membrane protein 27.7 1.9E+02 0.0063 23.1 7.2 58 98-155 39-101 (148)
100 3inn_A Pantothenate synthetase 22.7 39 0.0013 31.8 2.3 26 216-241 161-186 (314)
101 3ag6_A Pantothenate synthetase 21.0 44 0.0015 30.9 2.2 62 83-148 25-89 (283)
No 1
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=2.6e-68 Score=514.87 Aligned_cols=229 Identities=54% Similarity=0.879 Sum_probs=214.5
Q ss_pred CCCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
..++++|+|++|||.+|||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+|+||+|++||
T Consensus 13 ~~~~~i~sG~~PTG~lHLGh~vg~l~~~~~lQ~~~~~~~~iaD~hA~t~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~if 92 (346)
T 3n9i_A 13 SSKPIVFSGAQPSGELTIGNYMGALRQWVQMQDDYDCIYCIVDLHAITARQDPALLRKRTLDTLALYLACGIDPKKSTIF 92 (346)
T ss_dssp --CCEEEEEECSCSCCBHHHHHHTHHHHHTTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHHTCCTTTSEEE
T ss_pred CCCCEEEECcCCCCcccHHHHHHHHHHHHHHHhhCcEEEEEecceeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEE
Confidence 34679999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred EcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHH
Q 021028 156 VQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRE 235 (318)
Q Consensus 156 ~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rd 235 (318)
+||+|++|.+++|+|.|.+++++|+|+.+|+++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||+||+||
T Consensus 93 ~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQAaDil~~~ad~vpvG~DQ~~hleltRd 171 (346)
T 3n9i_A 93 VQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARYA-ENINAGLFDYPVLMAADILLYQTNQVPVGEDQKQHLELSRD 171 (346)
T ss_dssp EGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHSG-GGCBHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHH
T ss_pred eccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhccC-CCCCchhHHhHHHHHHHHHHhCceEEEeccchHHHHHHHHH
Confidence 99999999999999999999999999999998876653 57899999999999999999999999999999999999999
Q ss_pred HHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCC
Q 021028 236 LAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDS 315 (318)
Q Consensus 236 ia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~ 315 (318)
||+|||+.||. +|.+|++++++.+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+
T Consensus 172 ia~rfn~~yg~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~kA~Td~ 239 (346)
T 3n9i_A 172 IASRFNNLYGD------------IFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKRAMTDS 239 (346)
T ss_dssp HHHHHHHHHSS------------CSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHTCCCCC
T ss_pred HHHHhccccCC------------cccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHhCcCCC
Confidence 99999999873 478899999876689999988988999999866799999999999999999999999
Q ss_pred CC
Q 021028 316 SA 317 (318)
Q Consensus 316 ~~ 317 (318)
..
T Consensus 240 ~~ 241 (346)
T 3n9i_A 240 DE 241 (346)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 2
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=4.6e-68 Score=519.59 Aligned_cols=225 Identities=54% Similarity=0.842 Sum_probs=205.6
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
.++||+|++|||.+|||||+|+|++|++||++++++|+||||||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 35 ~~ri~sG~~PTG~lHLGhyvGal~~~~~LQ~~~~~~~~IaD~hAlt~~~~~~~lr~~~~~~aa~~lA~GlDp~kt~if~q 114 (388)
T 3prh_A 35 KQTIFSGIQPSGSVTLGNYIGAMKQFVELQHDYNSYFCIVDQHAITVPQDRLELRKNIRNLAALYLAVGLDPEKATLFIQ 114 (388)
T ss_dssp CCEEEEEECCCSCCBHHHHHHTHHHHHHTTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CCeEEEeeCCCCcchHHHHHHHHHHHHHHHccCcEEEEEecceeeecCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEec
Confidence 34599999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia 237 (318)
|+|++|.+++|+|+|.+++++|+|+.+||++.+.. +++++|+|+||+|||||||+|++|+||||.||+||+|++||||
T Consensus 115 S~v~~~~el~w~l~~~~~~~~L~R~~~fk~k~~~~--~~~~~g~~~YPvLQAADIl~~~ad~vPvG~DQ~~hleltRdia 192 (388)
T 3prh_A 115 SEVPAHAQAGWMMQCVAYIGELERMTQFKDKSKGN--EAVVSGLLTYPPLMAADILLYGTDLVPPGEDQKQHLELTRNLA 192 (388)
T ss_dssp GGSTHHHHHHHHHHTTSCHHHHHTTC------------CCBHHHHSCHHHHHHHHHTTTCCEECCCSSCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhccHHHHHhhhhHhHHhhcc--CCCcchhHhhHHHHHHHHHHhCCCEEEechhHHHHHHHHHHHH
Confidence 99999999999999999999999999999876543 5789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
+|||+.||. +|.+|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.
T Consensus 193 ~rfn~~y~~------------~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~n~I~L~D~p~~I~kKI~ka~TD~~ 259 (388)
T 3prh_A 193 ERFNKKYND------------IFTIPEVKIPKVGARIMSLNDPLKKMSKSDPNQKAYITLLDEPKQLEKKIKSAVTDSE 259 (388)
T ss_dssp HHHHHHTCS------------CCCCCEECCCSCCCCCBCSSCTTSBCCTTCSSTTSCCBTTCCHHHHHHHHHTCCCCSS
T ss_pred HHhCcccCC------------CcccchhhhcccccccccCCCCCCccCCCCCCCCCeeecCCCHHHHHHHHhhccCCCC
Confidence 999999873 4788999998766899999888899999999878999999999999999999999985
No 3
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1.8e-68 Score=515.32 Aligned_cols=229 Identities=48% Similarity=0.808 Sum_probs=214.6
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
+++||+|++|||.+|||||+|+|++|++||++++++|+||||||++++.+++++++++++++++|+|+||||+|++||+|
T Consensus 6 ~~~v~sG~~PTG~lHLGhy~g~l~~~~~lQ~~~~~~~~iaD~ha~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i~~q 85 (341)
T 3sz3_A 6 KPIVLSGVQPSGELSIGNYLGALRQWQQMQDDYDCQYCVVDLHAITVRQDPQALHEATLDALAICLAVGVDPKKSTLFVQ 85 (341)
T ss_dssp SCEEEEEECSSSCCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred CCEEEeCcCCCCcccHHHHHHHHHHHHHHHhcCeEEEEEecceeEcCCCCHHHHHHHHHHHHHHHHHcCCChhhcEEEec
Confidence 46999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia 237 (318)
|+|++|.+++|+|.|.+++++|+|+.+|+++..+.+ +++++|+|+||+|||||||+|++|+||||.||+||++|+||||
T Consensus 86 S~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~-~~~~~g~~~YP~lQaaDil~~~ad~vpvG~DQ~~hlel~Rdia 164 (341)
T 3sz3_A 86 SHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA-NDVNAGLFGYPVLMAADILLYGAHQVPVGSDQKQHLELARDIA 164 (341)
T ss_dssp GGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG-GGCCHHHHHHHHHHHHHHHTTTCSEECCCGGGHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc-CCCChhhHHhHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHH
Confidence 999999999999999999999999999999877664 6789999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
+|||+.||.+. .+|.+|+++++..+++||||+||++|||||+|+++|+|+|+|+|++|++|||+|+||+.
T Consensus 165 ~rfn~~yg~~~---------~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~a~Td~~ 234 (341)
T 3sz3_A 165 TRFNNIYSPEQ---------PIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINKAQTDAE 234 (341)
T ss_dssp HHHHHHHCSSS---------CSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHTCCCCCC
T ss_pred HHhchhccCCC---------cccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhhccCCCC
Confidence 99999987410 24788999987655899999888889999998778999999999999999999999985
No 4
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.5e-65 Score=493.81 Aligned_cols=227 Identities=42% Similarity=0.657 Sum_probs=208.8
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
++++|+||+|||.+|||||+|++.+|++||++++++|+|||+||+|++.+++++++++++++++|+|+||||+|++||+|
T Consensus 4 ~~~i~sG~~PTG~lHLGn~vg~l~~~~~lQ~~~~~~~~IaD~ha~~~~~d~~~i~~~~~~~~~~~lA~Gldp~k~~if~q 83 (348)
T 2yy5_A 4 MKRALTGIQASGKQHLGNYLGVMQSLIELQEQCQLFVFVADLHSITVDFQPQALKQNNFDLVRTLLAVGLDPQKACLFLQ 83 (348)
T ss_dssp CCEEEEEECCCTTCBHHHHHHTGGGHHHHHHHSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEG
T ss_pred CeEEEEeeCCCCcccHHHHHHHHHHHHHHHhCCcEEEEEcChhhccCCCCHHHHHHHHHHHHHHHHHhCCChhHeEEEEC
Confidence 67999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-----CCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-----GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLEL 232 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-----~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l 232 (318)
|++++|.+++|+++|.+++++|+|+.+||++.++.+ .+++++|+|+||+||||||++|++|+||||.||++|+++
T Consensus 84 S~~~~~~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaDil~~~a~~vpvG~DQ~~~lel 163 (348)
T 2yy5_A 84 SDLLEHSMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGDILLYQPDIVPVGNDQKQHLEL 163 (348)
T ss_dssp GGCHHHHHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHHHHTTCCSEEECCGGGHHHHHH
T ss_pred CcccchhHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHHHHHhCccEEEecccHHHHHHH
Confidence 999999999999999999999999999998765432 357899999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhcccc
Q 021028 233 TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCK 312 (318)
Q Consensus 233 ~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~ 312 (318)
+||||+|||+.||. +|++|++++++.+++||||++|++|||||.++++++|+|+|+|++|++|||+|+
T Consensus 164 ~Rdia~r~n~~yg~------------~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~~KI~~a~ 231 (348)
T 2yy5_A 164 TRDLAQRIQKKFKL------------KLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVVKKIRQAT 231 (348)
T ss_dssp HHHHHHHHHHHHCC------------CCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhhccc------------ccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHHHHHHhCC
Confidence 99999999999873 478899999765589999976678999999854459999999999999999999
Q ss_pred CCCC
Q 021028 313 TDSS 316 (318)
Q Consensus 313 Td~~ 316 (318)
||+.
T Consensus 232 td~~ 235 (348)
T 2yy5_A 232 TDSF 235 (348)
T ss_dssp CCSS
T ss_pred CCCc
Confidence 9985
No 5
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=1.4e-64 Score=486.06 Aligned_cols=224 Identities=54% Similarity=0.839 Sum_probs=208.6
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcC
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQS 158 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS 158 (318)
+++|+||+|||.+|||||+|+|++|++||++++++|+|||+||+|++.+++++++++++++++|+|+|+||+|++||+||
T Consensus 2 ~~vysG~~PTG~lHlGn~vg~l~~~~~lQ~g~~~~~~IaD~ha~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~if~qS 81 (328)
T 1i6k_A 2 KTIFSGIQPSGVITIGNYIGALRQFVELQHEYNCYFCIVDQHAITVWQDPHELRQNIRRLAALYLAVGIDPTQATLFIQS 81 (328)
T ss_dssp CEEEEEECCCSCCBHHHHHHTHHHHHHHTTTSEEEEEECHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCCTTTEEEEEGG
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHcCCcEEEEEeCceeecCCCCHHHHHHHHHHHHHHHHHhCCChhhcEEEecC
Confidence 58999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHH
Q 021028 159 HVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAE 238 (318)
Q Consensus 159 ~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~ 238 (318)
+|++|.+++|++.|.+++++|+|+.+||++..+ + +++++|+|+||+||||||++|++|+||||.||++|++++||||+
T Consensus 82 ~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~-~-~~~~~g~f~YPvLQaaDil~~~~~~vpvG~DQ~~~iel~Rdia~ 159 (328)
T 1i6k_A 82 EVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG-K-EAVSAGLLTYPPLMAADILLYNTDIVPVGEDQKQHIELTRDLAE 159 (328)
T ss_dssp GCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT-C-SSCCHHHHTHHHHHHHHHHTTTCSEEECCGGGHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHhccccHHHHHHHHHHHHHHhc-c-CCCCchhhccHHHHHHHHHHhCCCEEecccchHHHHHHHHHHHH
Confidence 999999999999999999999999999987654 2 67899999999999999999999999999999999999999999
Q ss_pred HhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 239 RVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 239 k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
|||+.||. +|++|++++++.+++||||++|++|||||.+++.++|+|+|+|++|++|||+|+||+.
T Consensus 160 r~n~~yg~------------~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~a~td~~ 225 (328)
T 1i6k_A 160 RFNKRYGE------------LFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSE 225 (328)
T ss_dssp HHHHHHCS------------CCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHHCCCCSS
T ss_pred HhCccccc------------ccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHhcCCCCc
Confidence 99999873 4788999997555899999666689999997422349999999999999999999985
No 6
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=2e-64 Score=483.88 Aligned_cols=220 Identities=39% Similarity=0.691 Sum_probs=205.9
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEc
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQ 157 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~q 157 (318)
..++|+||+|||.+|||||+|+|++|++||+|++++|+|||+||++++.+++++++++++++++|+|+|+||+|++||+|
T Consensus 3 ~~~vysG~~PTg~lHlG~~lg~l~~~~~lQ~g~~~~~~iaD~ha~~~~~~~~~l~~~~~~~~~~~lA~Gldp~k~~i~~q 82 (322)
T 3tzl_A 3 AMRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAMTSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQ 82 (322)
T ss_dssp -CCBEEEECCSSCCBHHHHHHTHHHHHHTTTTSCCEEEECHHHHTTTCCCHHHHHHHHHHHHHHHHHTTCCTTTSEEEEG
T ss_pred ceEEEEccCCCccccHHHHHHHHHHHHHHhcCCCEEEEEecCeeecCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEEC
Confidence 45899999999999999999988999999999999999999999999889999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHH
Q 021028 158 SHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELA 237 (318)
Q Consensus 158 S~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia 237 (318)
|+|++|.+++|.++|.+++++|+|+.+||++.... +++++|+|+||+||||||++|++|+||||.||+||++++||+|
T Consensus 83 S~~~~~~el~~~l~~~~~~~~l~r~~~~K~~~~~~--~~~~~g~f~YP~LQAaDil~~~~~~vpvG~DQ~~hi~l~Rdia 160 (322)
T 3tzl_A 83 SDVKEVMELYWILSQFTPMGLLERAHSYKDKVAKG--LSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIA 160 (322)
T ss_dssp GGCTHHHHHHHHHGGGCBHHHHHSCHHHHHHHHTT--CCCBHHHHHHHHHHHHHHHHTTCSEEECCGGGHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHhccCcHHHHHhhhHHHHHHccC--CCCchHHHHHHHHHHHHHHHhCCcEEEeccchHHHHHHHHHHH
Confidence 99999999999999999999999999999876542 5799999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 238 ERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 238 ~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
+|||+.||. +|++|+.++...+++|||| || +|||||.+ |+|+|+|+|++|++|||+|+||+.
T Consensus 161 ~r~n~~~g~------------~f~~P~~~~~~~~~~l~~l-~G-~KMSKS~~---n~I~L~d~p~~i~~KI~~a~td~~ 222 (322)
T 3tzl_A 161 LKVNNEWGE------------IFTLPEARVNEEVAVVVGT-DG-AKMSKSYQ---NTIDIFSSEKTLKKQISSIVTDST 222 (322)
T ss_dssp HHHHHHHCS------------CSCCCEEECCCSSCCCBCT-TS-SBCCGGGT---CCCBSSCCHHHHHHHHHTCCCCCC
T ss_pred HHhcccccC------------CCCCchhhhccccccccCC-CC-CcCCCCCC---CceecCCCHHHHHHHHHhccCCCc
Confidence 999999873 4889999886545899999 77 89999995 689999999999999999999975
No 7
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=5.3e-63 Score=479.00 Aligned_cols=224 Identities=33% Similarity=0.507 Sum_probs=208.7
Q ss_pred CCCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 76 SVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 76 ~~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+.++++|+||+|||.+|||||+|+|++|++||+.++++|+|||+||+++ +.+++++++++++++++|+|+|+||+|++|
T Consensus 20 ~~~~~vysG~~PTG~lHLGn~~g~l~~~~~lQ~~~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i 99 (351)
T 1yi8_B 20 PARPRVLTGDRPTGALHLGHLAGSLQNRVRLQDEAELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQKTTC 99 (351)
T ss_dssp -CCSEEEEEECCSSCCBHHHHHHTHHHHHHHTSSSEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTTTEEE
T ss_pred CCCcEEEEeeCCCCCccHHHHHHHHHHHHHHHHhCCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChhhcEE
Confidence 5689999999999999999999999999999998999999999999998 689999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHH
Q 021028 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELT 233 (318)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~ 233 (318)
|+||+|++|.++.|.|+|.+++++|+|+.+||++....+ .+++++|+|+||+||||||++|++|+||||.||++|++++
T Consensus 100 ~~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~l~ 179 (351)
T 1yi8_B 100 VVQSAVPELAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAADIAAFGATLVPVGDDQLPMLEQT 179 (351)
T ss_dssp EEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHHHHHHTCSEEEECGGGHHHHHHH
T ss_pred EEcCchhhHHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhhHHhcCCCEEEecCCcHHHHHHH
Confidence 999999999999999999999999999999999876553 3678999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccC
Q 021028 234 RELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKT 313 (318)
Q Consensus 234 Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~T 313 (318)
||||+|||+.||. +|++|+++++.. ++|||| ||++|||||.+ |+|+|+|+|++|++||++|+|
T Consensus 180 rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~~l-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~t 242 (351)
T 1yi8_B 180 REIVRRFNALYAP------------VLAEPQAQLSRV-PRLPGL-DGQAKMSKSLG---NAIALGDSADEVARKVMGMYT 242 (351)
T ss_dssp HHHHHHHHHHTCS------------CSCCCEEEECSS-CSCCCT-TSSSCCCTTTT---CCCBTTCCHHHHHHHHHTCCC
T ss_pred HHHHHHHHhhccc------------ccCCCeeeeecC-ccccCC-CCccccCCCCC---CeecCCCCHHHHHHHHHhcCC
Confidence 9999999998873 478899887643 899999 88779999985 599999999999999999999
Q ss_pred CCC
Q 021028 314 DSS 316 (318)
Q Consensus 314 d~~ 316 (318)
|+.
T Consensus 243 d~~ 245 (351)
T 1yi8_B 243 DPG 245 (351)
T ss_dssp CTT
T ss_pred Ccc
Confidence 973
No 8
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=3.1e-62 Score=471.33 Aligned_cols=220 Identities=50% Similarity=0.848 Sum_probs=205.2
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-c-CcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-S-YETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g-~~v~ilIaD~hA~t~~--~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+++|+||+|||.+|||||+|+|++|++||+ | ++++|+|||+||++++ .+++++++++++++++|+|+|+||+|++|
T Consensus 2 ~~vy~G~~PTg~lHlGh~~g~l~~~~~lQ~~G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~i 81 (337)
T 2el7_A 2 KRVLSGIQPSGEIHIGNYLGAIKQWVAIGEKLGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVTL 81 (337)
T ss_dssp CCEEEEECSCSCCBHHHHHTHHHHHHHHHHHHGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSEE
T ss_pred CEEEEeeCCCCcccHHHHHHHHHHHHHHHhcCCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheEE
Confidence 589999999999999999999999999998 6 9999999999999997 78999999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHHHHH
Q 021028 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTR 234 (318)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~R 234 (318)
|+||+|++|.+++|+++|.+++++|+|+.+||++.+. .+++++|+|+||+||||||++|++|+||||.||++|++++|
T Consensus 82 ~~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~r~~~--~~~~~~g~f~YPvLQaaDil~~~~~lvp~G~DQ~~~i~l~r 159 (337)
T 2el7_A 82 FVQSHVPEHTELSWVFTTLTPLGDLTRMTQFKDKASK--QETVWSGLLMYPVLQAADILIYKADTVPVGEDQVQHIELTR 159 (337)
T ss_dssp EEGGGSTHHHHHHHHHHHTSBHHHHHTSHHHHHHTTS--SSCCBHHHHHHHHHHHHHHHHTTCCEEECCGGGCHHHHHHH
T ss_pred EEcCcchhhHHHHHHHHccCCHHHHHHhHHHHHHhcc--CCCCChHHHHhHHHHHhhHHhhCCcEEEcccchHHHHHHHH
Confidence 9999999999999999999999999999999986543 36799999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccccCC
Q 021028 235 ELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRCKTD 314 (318)
Q Consensus 235 dia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td 314 (318)
|||+|||+.||. +|.+|+++++..+++||+| ||++|||||.+ |+|+|+|+|++|++||++|+||
T Consensus 160 dla~r~n~~~g~------------~f~~P~~~~~~~~p~l~gl-dG~~KMSKS~~---n~I~L~d~p~~i~~Ki~~a~td 223 (337)
T 2el7_A 160 EIARRFNHLFGE------------TFPEPQALLNPEAPRVPGI-DGKAKMSKSLG---NTIGLLEPEESIWQKIQHLPDD 223 (337)
T ss_dssp HHHHHHHHHHSS------------CCCCCEEECCTTSCCCBCT-TSSSBCCTTTT---CCCBSSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHhhcCc------------ccCCCeeecccccccccCC-CCccccCCCCC---CeeeCcCCHHHHHHHHHhCCCC
Confidence 999999999873 4788999998655799999 66789999985 5999999999999999999999
Q ss_pred CC
Q 021028 315 SS 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 224 ~~ 225 (337)
T 2el7_A 224 PQ 225 (337)
T ss_dssp C-
T ss_pred Cc
Confidence 73
No 9
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-61 Score=467.98 Aligned_cols=220 Identities=41% Similarity=0.685 Sum_probs=201.0
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
..+++|+|++|||.+|||||+|+|++|++||+ |++++++|||+||+|+ +.|++++++++++++++|+|+|+||+|++|
T Consensus 11 ~~~~v~~G~~PTG~lHLGn~~g~l~~~~~lQ~~G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~i 90 (340)
T 2g36_A 11 HHMRILSGMRPTGKLHIGHLVGALENWVKLQEEGNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSVI 90 (340)
T ss_dssp -CCEEEEEECCCSSCBHHHHHTHHHHHHHHHHTTCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CCCeEEEeeCCCCcccHHhHHHHHHHHHHHHHCCCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeEE
Confidence 46899999999999999999999999999998 7999999999999998 678889999999999999999999999999
Q ss_pred EEcCCchhhhHHHHHHhccCCHHHHhchhhhHH---HhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHH
Q 021028 155 FVQSHVRAHVELMWLLSSATPIGWLNKMIQFKE---KSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (318)
Q Consensus 155 ~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~---~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~ 231 (318)
|+||+|++|.++.|.++|.+++++|+|+.+||+ +.+. .+++++|+|+||+||||||++|++|+||||.||++|++
T Consensus 91 f~qS~~~~~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~--~~~~~~g~f~YPvLQAaDil~~~~~~vpvG~DQ~~hi~ 168 (340)
T 2g36_A 91 FVQSGVKEHAELALLFSMIVSVSRLERVPTYKEIKSELNY--KDLSTAGFLIYPVLQAADILIYKAEGVPVGEDQVYHIE 168 (340)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHTC---------CCCSHHHHTHHHHHHHHHHTTTCSEEEECGGGHHHHH
T ss_pred EECCchHHHHHHHHHHHccCCHHHHHHhHHHHhHHHHhcc--CCCCChHHhhhHHHHHhhHHHhCCCEEEcccchHHHHH
Confidence 999999999999999999999999999999997 4332 25689999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccc
Q 021028 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (318)
Q Consensus 232 l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A 311 (318)
++||||+|||+.||. +|++|++++... ++|||| || +|||||.+ |+|+|+|+|++|++||++|
T Consensus 169 l~rdia~r~n~~yg~------------~f~~P~~~~~~~-~~l~gl-dG-~KMSKS~~---n~I~L~dsp~~i~~Ki~~a 230 (340)
T 2g36_A 169 LTREIARRFNYLYDE------------VFPEPEAILSRV-PKLPGT-DG-RKMSKSYG---NIINLEISEKELEQTILRM 230 (340)
T ss_dssp HHHHHHHHHHHHSCC------------CCCCCEEEECCS-CCCCCT-TS-SCCCGGGT---CCCBTTCCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhhccc------------ccCCchhhhccc-cccCCC-Cc-cccCCCCC---CeEeeeCCHHHHHHHHHhC
Confidence 999999999998873 478899877544 899999 78 49999985 6899999999999999999
Q ss_pred cCCCC
Q 021028 312 KTDSS 316 (318)
Q Consensus 312 ~Td~~ 316 (318)
+||+.
T Consensus 231 ~td~~ 235 (340)
T 2g36_A 231 MTDPA 235 (340)
T ss_dssp CCCTT
T ss_pred CCCcc
Confidence 99974
No 10
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=6.4e-57 Score=439.49 Aligned_cols=215 Identities=22% Similarity=0.302 Sum_probs=190.1
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+||||.+..+.+|++||+ ||+++|+|||+||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 55 ~~~~iy~G~~PTg~lHlG~gvl~~~~~~~lQ~~G~~~~~lIaD~ha~i~d~~~~~~~~i~~~~~~~~~~~~a~G~dp~k~ 134 (373)
T 3vgj_A 55 RKLICYDGFEPSGRMHIAQGLLKSIIVNKLTSNGCTFIFWIADWFAHLNNKMSGDLKKIKKVGSYFIEVWKSCGMNMENV 134 (373)
T ss_dssp SSCEEEEEECCCSSCBHHHHHHHHHHHHHHHTTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCSTTE
T ss_pred CCceEEeCCCCCCCceehhhHHHHHHHHHHHHCCCcEEEEEecceeEecCCCCCCHHHHHHHHHHHHHHHHHcCCChhhe
Confidence 47899999999999999996533346899998 89999999999999973 588999999999999999999999999
Q ss_pred EEEEcCCch-hhhHHHHHHh----ccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcch
Q 021028 153 SVFVQSHVR-AHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (318)
Q Consensus 153 ~i~~qS~~~-~~~el~w~L~----~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~ 227 (318)
+||+||+|. +|.+++|.+. ..++++++.++.+|+.+.. .+++++|+|+||+||||||++|++|+||||.||+
T Consensus 135 ~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~---~~~~~~g~f~YPlLQaaDil~l~ad~vpgG~DQ~ 211 (373)
T 3vgj_A 135 QFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSE---GEENYCSQILYPCMQCADIFFLNVDICQLGIDQR 211 (373)
T ss_dssp EEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCT---TSCCBTHHHHHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhc---cCCCChHHHHHHHHHHhcccccCCcEEEcchhhH
Confidence 999999998 8999999755 4789999999988864322 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 228 ~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+|++++||+|+|||++|+ |..+.. ++||||+||++|||||.| +|+|+|+|+|++|++|
T Consensus 212 ~~l~l~Rdla~r~~~~~~-----------------~~~l~~---p~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~~K 269 (373)
T 3vgj_A 212 KVNMLAREYCDIKKIKKK-----------------PVILSH---GMLPGLLEGQEKMSKSDE--NSAIFMDDSESDVNRK 269 (373)
T ss_dssp HHHHHHHHHHHHHTCSCC-----------------CEEEEB---CCCCCSSTTCCSCCSSST--TCCCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEEeC---CeeecCCCCCCCCcCCCC--CCeeecCCCHHHHHHH
Confidence 999999999999996542 444444 689999899889999997 4899999999999999
Q ss_pred hccccCCCC
Q 021028 308 IKRCKTDSS 316 (318)
Q Consensus 308 I~~A~Td~~ 316 (318)
||+|+||+.
T Consensus 270 I~kA~td~~ 278 (373)
T 3vgj_A 270 IKKAYCPPN 278 (373)
T ss_dssp HHHSCCCTT
T ss_pred HHhCcCCCC
Confidence 999999974
No 11
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=3.3e-57 Score=437.97 Aligned_cols=213 Identities=22% Similarity=0.277 Sum_probs=178.6
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC---CHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY---DTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~---d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+|||||++.+.+|++||+ |++++++|||+||++++. +++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHlGhyl~~l~~~~~lQ~~G~~~~~~i~D~~a~~~~~~~~~~e~i~~~~~~~~~~~la~Gldp~k~ 118 (348)
T 2j5b_A 39 RIFTAYNGFEPSGRIHIAQALITVMNTNNMIECGGQMIIYIADWFAKMNLKMNGDINKIRELGRYFIEVFKACGINLDGT 118 (348)
T ss_dssp CCEEEEEEECCCSSCBHHHHHHHHHHHHHHHHTTEEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCCEEEeccCCCCCCchhHHHHHHHHHHHHHHcCCcEEEEeccchhhhCCCCCCCHHHHHHHHHHHHHHHHHhcCCccce
Confidence 47899999999999999998888899999998 799999999999999853 89999999999999999999999999
Q ss_pred EEEEcCCc-hhhhHHHHHHhc----cCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc---cccEEEecC
Q 021028 153 SVFVQSHV-RAHVELMWLLSS----ATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---QSDFVPVGE 224 (318)
Q Consensus 153 ~i~~qS~~-~~~~el~w~L~~----~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~---~adivpvG~ 224 (318)
+||+||+| .+|. ++|.+.+ .++++++.++.+++.+. ..+++++|+|+||+||||||+++ ++|+||||.
T Consensus 119 ~i~~qs~~~~~~~-~~~~~~~~v~~~~~~~~m~~~~~~~~r~---~~~~i~~g~f~YP~lQaaDil~~~~~~~~~~~~G~ 194 (348)
T 2j5b_A 119 RFIWASEFIASNP-SYIERMLDIAEFSTISRVKRCCQIMGRN---ESDCLKASQIFYPCMQAADVFELVPEGIDICQLGI 194 (348)
T ss_dssp EEEEHHHHHHHCH-HHHHHHHHHHHHHHHHHHTC--------------------CCHHHHHHHHHHHSSTTCCSEECCBG
T ss_pred EEEECCHhhhhhh-HHHHHHHHHHhheeHHHHHhhhhhhhhh---ccCCcChHHHhhHHHHHHHHHHHhcCCCcEEEecc
Confidence 99999998 5566 8997664 88889888887776532 12568999999999999999999 999999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHH
Q 021028 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (318)
Q Consensus 225 DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I 304 (318)
||++|++++||+|+|||..| |..+.. ++||||+||.+|||||.| +|+|+|+|+|++|
T Consensus 195 DQ~~~i~l~Rdia~r~~~~~------------------p~~~~~---~~l~gL~dg~~KMSKS~~--~~~I~L~d~p~~i 251 (348)
T 2j5b_A 195 DQRKVNMLAIEYANDRGLKI------------------PISLSH---HMLMSLSGPKKKMSKSDP--QGAIFMDDTEQEV 251 (348)
T ss_dssp GGHHHHHHHHHHHHHTTCCC------------------CEEEEB---CCCCCTTCSSCCCSTTCG--GGSCBTTCCHHHH
T ss_pred ChHHHHHHHHHHHHHhCCCC------------------ceeecC---ccccCCCCcccccccCCC--CCeEeecCCHHHH
Confidence 99999999999999999542 544443 789999888889999997 4899999999999
Q ss_pred HHhhccccCCCC
Q 021028 305 ANKIKRCKTDSS 316 (318)
Q Consensus 305 ~~KI~~A~Td~~ 316 (318)
++|||+|+||+.
T Consensus 252 ~kKI~ka~td~~ 263 (348)
T 2j5b_A 252 SEKISRAYCTDE 263 (348)
T ss_dssp HHHHHHSCCCSS
T ss_pred HHHHhcccCCCC
Confidence 999999999985
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=2.1e-57 Score=443.32 Aligned_cols=218 Identities=22% Similarity=0.304 Sum_probs=192.9
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHH-HHHH----HHHHHcCC
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKAT-RETA----AIYLACGI 147 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~---~d~~~i~~~~-~~~~----~~llA~Gi 147 (318)
+++++|+||+|||.+|||||++.+.+|++||+ |++++|+|||+||++++ .+++++++++ ++++ ++|+|+|+
T Consensus 32 ~~~~vy~G~~PTg~lHlG~yl~~l~~~~~lQ~~G~~~~~~iaD~ha~~~~~~g~~~e~i~~~~~~~~~~~~~~~~la~G~ 111 (375)
T 2cyc_A 32 APLQHYIGFEISGYIHLGTGLMAGAKIADFQKAGIKTRVFLADWHSWINDKLGGDLEVIQEVALKYFKVGMEKSIEVMGG 111 (375)
T ss_dssp CCCBEEEEECCCSCCBHHHHHHHHHHHHHHHHTTCBCEEEECHHHHHHTTGGGGCHHHHHHHHHHTHHHHHHHHHHHTTC
T ss_pred CCcEEEeCCCCCCCcCchHHHHHHHHHHHHHHCCCcEEEEecCcEEEcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999998888999999998 79999999999999985 3899999999 8888 99999999
Q ss_pred CCCceEEEEcCCchhhhHHHHHH----hccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEec
Q 021028 148 DNSKASVFVQSHVRAHVELMWLL----SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVG 223 (318)
Q Consensus 148 Dpek~~i~~qS~~~~~~el~w~L----~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG 223 (318)
||+|++||+||+|++|. ++|.+ ++.+++++|.|+.+||.+. . .+++++|+|+||+||||||++|++|+||||
T Consensus 112 dp~k~~i~~qS~~~~~~-~~~~~~~~~~~~~~~~~m~~~~~~k~r~--~-~~~i~~g~f~YP~LQaaDil~~~~~~vp~G 187 (375)
T 2cyc_A 112 DPKKVEFVLASEILEKG-DYWQTVIDISKNVTLSRVMRSITIMGRQ--M-GEAIDFAKLIYPMMQVADIFYQGVTIAHAG 187 (375)
T ss_dssp CGGGSEEEETHHHHTBH-HHHHHHHHHHTTSBHHHHHHTGGGGTCC--C-CTTCBTHHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred CccceEEEEcchhhhhh-HHHHHHHHHhceeEHHHHhccchhhhhc--c-CCCCChHHHHHHHHHHHHHHHhCCCeeccc
Confidence 99999999999999987 88986 8899999999999998643 2 256899999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHhhhh---h-CCccccccCCCCCccccCCccccCCCCcccccCCCC----------------CCC
Q 021028 224 EDQKQHLELTRELAERVNYL---Y-GGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG----------------LSK 283 (318)
Q Consensus 224 ~DQ~~hi~l~Rdia~k~n~~---~-g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg----------------~~K 283 (318)
.||++|++++||+|+|||+. | |.. + .|..+.. ++||+|++| ++|
T Consensus 188 ~DQ~~~i~l~rdla~r~n~~~~~~~g~~------------~-~~~~~~~---~~l~gL~g~~~~~~~~~~~~~~~~~~~K 251 (375)
T 2cyc_A 188 MDQRKAHVIAIEVAQKLRYHPIVHEGEK------------L-KPVAVHH---HLLLGLQEPPKWPIESEEEFKEIKAQMK 251 (375)
T ss_dssp GGGHHHHHHHHHHGGGCSSSCEEETTEE------------E-CCEEEEE---CCCBCSSCCSSSSCCSHHHHHHHHHHHB
T ss_pred chHHHHHHHHHHHHHHhCCccccccccc------------C-ccEEecc---ccccCCCCcccccccchhhhhhhhhhhc
Confidence 99999999999999999961 2 210 1 3555443 789999443 489
Q ss_pred ccCCCCCCCCeEeccCCHHHHHHhhccccCCCC
Q 021028 284 MSKSAPSDQSRINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 284 MSKS~p~~~s~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
||||.| +|+|+|+|+|++|++|||+|+||+.
T Consensus 252 MSKS~~--~~~I~L~d~p~~i~~KI~~A~t~~~ 282 (375)
T 2cyc_A 252 MSKSKP--YSAVFIHDSPEEIRQKLRKAFCPAR 282 (375)
T ss_dssp GGGSCG--GGSCBTTCCHHHHHHHHHHSCCCTT
T ss_pred ccCCCC--CCeeccCCCHHHHHHHHHHhcCCCC
Confidence 999997 4899999999999999999999974
No 13
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-56 Score=439.55 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=184.7
Q ss_pred CCceEEEeeCCCCccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~~--~d~~~i~~~~~~~~~~llA~GiDpek 151 (318)
+++++|+|++|||.+|||||++++ .+| ||+ |++++|+|||+||+++. .+++++++++++++++|+|+|+||+|
T Consensus 72 ~p~~i~sG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 149 (392)
T 3jxe_A 72 RGFFLYTGRGPSGPMHIGHIIPFFATKW--LQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDK 149 (392)
T ss_dssp CCCEEEEEECCSSCCBHHHHHHHHHHHH--HHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCeEEEeccCCCCchhHHHHHHHHHHHH--HHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccc
Confidence 588999999999999999999986 677 886 78999999999999873 68999999999999999999999999
Q ss_pred eEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc-cccEEEecCcchHHH
Q 021028 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY-QSDFVPVGEDQKQHL 230 (318)
Q Consensus 152 ~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~-~adivpvG~DQ~~hi 230 (318)
++||+||+|+++.++.|.+++.++++++.++.+|+ +++++|+|+||+|||||||++ ++|+||||.||++|+
T Consensus 150 t~i~~qS~~~~~~~~~~~l~~~~t~~~~~~~~~~~--------~~~~~g~f~YP~LQaaDil~~~~a~~vpvG~DQ~~hl 221 (392)
T 3jxe_A 150 TFIFQNSEFTKIYEMAIPIAKKINFSMAKAVFGFT--------EQSKIGMIFFPAIQIAPTFFERKRCLIPAAIDQDPYW 221 (392)
T ss_dssp EEEEETTTSTHHHHHHHHHHHHSBHHHHHHHHCCC--------TTSBHHHHHHHHHHHGGGGSSSSCEEEEEEGGGHHHH
T ss_pred eEEEECchhHHHHHHHHHHHhhCCHHHHhhhhccC--------CCCchHHHHHHHHHHhhHHhhcCCceeecccchHHHH
Confidence 99999999999999999999999999998876653 568999999999999999999 699999999999999
Q ss_pred HHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhcc
Q 021028 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (318)
Q Consensus 231 ~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~ 310 (318)
+++||+|+|||. +.|+++++ ++||||+++++|||||.| +|+|+|+|+|++|++|||+
T Consensus 222 ~l~Rdla~r~n~------------------~~p~~l~~---~~l~gLdG~~~KMSKS~~--ns~I~L~D~p~~I~kKI~k 278 (392)
T 3jxe_A 222 RLQRDFAESLGY------------------YKTAALHS---KFVPSLTSLSGKMSASKP--ETAIYLTDSPEDVEKKVWK 278 (392)
T ss_dssp HHHHHHTGGGTS------------------CCCEEEEE---CCCCCSSCSSSCCCTTSG--GGCCBTTCCHHHHHHHHHT
T ss_pred HHHHHHHHHcCC------------------CCCeeeec---ccccCCCCCccccccCCC--CCeeeCCCCHHHHHHHHHh
Confidence 999999999983 45888876 689999544469999997 4799999999999999999
Q ss_pred -ccCCCC
Q 021028 311 -CKTDSS 316 (318)
Q Consensus 311 -A~Td~~ 316 (318)
|+||+.
T Consensus 279 ~A~td~~ 285 (392)
T 3jxe_A 279 FTLTGGR 285 (392)
T ss_dssp CC-----
T ss_pred hccCCCC
Confidence 999985
No 14
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=1.4e-56 Score=435.97 Aligned_cols=213 Identities=21% Similarity=0.307 Sum_probs=186.8
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+|||| ++++.+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 34 ~~~~iy~G~~PTg~lHlG~-l~~l~~~~~lQ~~G~~~~~~iaD~~a~~~~ps~~~~e~i~~~~~~~~~~~la~G~dp~k~ 112 (364)
T 2cya_A 34 ARIKGYIGYEPSGVAHIGW-LVWMYKVKDLVEAGVDFSVLEATWHAYINDKLGGDMDLIRAAARIVRRVMEAAGVPVERV 112 (364)
T ss_dssp SCCEEEEEECCCSSCBTHH-HHHHHHHHHHHHTTCEEEEEECHHHHHHTTGGGGCHHHHHHHHHHHHHHHHHTTCCGGGC
T ss_pred CCCEEEeccCCCCCccHhH-HHHHHHHHHHHHCCCCEEEEEeCcchhhCCCCCCCHHHHHHHHHHHHHHHHHhCCCccce
Confidence 4789999999999999999 666889999998 79999999999999985 689999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHH----HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchH
Q 021028 153 SVFVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQ 228 (318)
Q Consensus 153 ~i~~qS~~~~~~el~w~----L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~ 228 (318)
+||+||+|+++ .++|. +++.+++++|.|+.+|+.+.. +..++++|+|+||+||||||++|++|+||||.||++
T Consensus 113 ~i~~qS~~~~~-~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~--~~~~i~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~ 189 (364)
T 2cya_A 113 RFVDAEELASD-KDYWGLVIRVAKRASLARVRRALTIMGRRA--EEAEVDASKLIYPLMQVSDIFYMDLDIALGGMDQRK 189 (364)
T ss_dssp EEEEHHHHHTC-HHHHHHHHHHHHTSCHHHHHTTC------C--CGGGSCTHHHHHHHHHHHHHHHTTCSEEEEEGGGHH
T ss_pred EEEecchhhcc-hHHHHHHHHHHCcCcHHHHHcCchhhhhhc--CCCCccchhhhhHHHHHhhHHhcCCCEEeccchHHH
Confidence 99999999887 67887 999999999999999986543 224589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCC---------------CCCCccCCCCCCCC
Q 021028 229 HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTD---------------GLSKMSKSAPSDQS 293 (318)
Q Consensus 229 hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~d---------------g~~KMSKS~p~~~s 293 (318)
|++++||+|+|||+ +.|..+.. ++||+|++ |++|||||++ +|
T Consensus 190 ~~~l~rdla~r~~~------------------~~p~~l~~---~ll~~l~g~~~~~~~~~~~~~~~~g~KMSKS~~--~~ 246 (364)
T 2cya_A 190 AHMLARDVAEKLGR------------------KKPVAIHT---PIISSLQGPGRMEASQGEIDDVLAEVKMSKSKP--ET 246 (364)
T ss_dssp HHHHHHHHHTTTTC------------------CCCEEEEE---CCCBCSSCC----------------CBCCSSSG--GG
T ss_pred HHHHHHHHHHHcCC------------------CCceeecc---ceeeCCCcccccccccccccccccccccCCCCC--CC
Confidence 99999999999983 24666654 68999954 3689999986 48
Q ss_pred eEeccCCHHHHHHhhccccCCCC
Q 021028 294 RINLLDPKDVIANKIKRCKTDSS 316 (318)
Q Consensus 294 ~I~L~D~pe~I~~KI~~A~Td~~ 316 (318)
+|+|+|+|++|++||++|+||+.
T Consensus 247 ~I~L~d~p~~i~~Ki~~a~td~~ 269 (364)
T 2cya_A 247 AVFVVDSDDDIRRKIRKAYCPAK 269 (364)
T ss_dssp SCBTTCCHHHHHHHHHTSCCCTT
T ss_pred EeeccCCHHHHHHHHHhCcCCCC
Confidence 99999999999999999999985
No 15
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=1.4e-55 Score=429.87 Aligned_cols=207 Identities=29% Similarity=0.423 Sum_probs=184.9
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC--CHHHHHHHHHHHHHHHHHcCCCCCceE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY--DTQQLSKATRETAAIYLACGIDNSKAS 153 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~--d~~~i~~~~~~~~~~llA~GiDpek~~ 153 (318)
++++||||++|||.+|||||++++ +|+++|+ +++++|+|||+||+|++. +++.+++++++++++|+|+||||+|++
T Consensus 69 k~~~v~sG~~PTG~lHLGhyv~~~-~~~~lq~~~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~ 147 (372)
T 3a04_A 69 ERVAVLTGFMPSGKFHFGHKLTVD-QLIYLQKNGFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTE 147 (372)
T ss_dssp CCCEEEEEECCCSCCBHHHHHHHH-HHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCE
T ss_pred CCCEEEeCcCCCcHhHHHHHHHHH-HHHHHHhCCCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcc
Confidence 588999999999999999999865 6777875 899999999999999854 557799999999999999999999999
Q ss_pred EEEcCCc-hhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhc--------ccccEEEecC
Q 021028 154 VFVQSHV-RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILL--------YQSDFVPVGE 224 (318)
Q Consensus 154 i~~qS~~-~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~--------~~adivpvG~ 224 (318)
||+||++ .++.++.|.+++.+++++++++. ...+.|.++||+||||||++ |++++||||.
T Consensus 148 if~qS~~~~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~yP~lqAaDil~~~~d~~~gy~a~~VPVG~ 216 (372)
T 3a04_A 148 FYFQTNRGTPYFRLIQLFSGKVTAAEMEAIY-----------GELTPAKMMASLTQAADILHVQLDEYGGYRHVVVPVGA 216 (372)
T ss_dssp EEEGGGSCHHHHHHHHHHTTSSCHHHHHHHH-----------SSCCHHHHHHHHHHHHHHHGGGSGGGTCCCCEEEEEEG
T ss_pred hhhhccchHHHHHHHHHHHhhhhHHHHhhhh-----------hccCcccccCCcchhHHHhhhcCccccCccceecccch
Confidence 9999984 67899999999999999987663 23578999999999999999 5566999999
Q ss_pred cchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHH
Q 021028 225 DQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVI 304 (318)
Q Consensus 225 DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I 304 (318)
||+||+||+||||+|||..|+ ++.|..+++ +++||| || .|||||+| +|+|+|+|+|++|
T Consensus 217 DQ~~hleltRdiA~rfn~~~~--------------~~~P~~~~~---~~~pgl-dG-~KmS~S~~--ns~I~l~D~p~~i 275 (372)
T 3a04_A 217 DQDPHLRLTRDLADRMAGVVE--------------LERPASTYH---KLQPGL-DG-RKMSSSRP--DSTIFLTDPPEVA 275 (372)
T ss_dssp GGHHHHHHHHHHHHHTTTTSC--------------CCCCEEEEE---CCCBCT-TS-SBCCTTSG--GGSCBTTCCHHHH
T ss_pred hhHHHHHHHHHHHHHhcCccc--------------ccChhhhhh---cccCCC-CC-CccCCCCC--CcccccCCCHHHH
Confidence 999999999999999998765 456888876 679999 77 79999997 5999999999999
Q ss_pred HHhhccccCCCC
Q 021028 305 ANKIKRCKTDSS 316 (318)
Q Consensus 305 ~~KI~~A~Td~~ 316 (318)
++|||+|+||+.
T Consensus 276 ~kKI~ka~td~~ 287 (372)
T 3a04_A 276 RNKLFRALTGGR 287 (372)
T ss_dssp HHHHHTCCCSCC
T ss_pred HHHHhcCccCCC
Confidence 999999999975
No 16
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=3.9e-53 Score=439.76 Aligned_cols=214 Identities=23% Similarity=0.346 Sum_probs=184.9
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCC---CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLP---YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~---~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+||||++....+|++||+ |++++|+|||+||++++ .+++++++++++++++|+|+|+||+|+
T Consensus 39 ~~~~vy~G~~PTg~lHLG~~v~~~~~~~~lQ~~G~~~~~lIaD~ha~~~d~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~ 118 (690)
T 3p0j_A 39 PLIRCYDGFEPSGRMHIAQGIFKAVNVNKCTAAGCEFVFWVADWFALMNDKVGGELEKIRIVGRYLIEVWKAAGMDMDKV 118 (690)
T ss_dssp TTEEEEEEECCCSCCBHHHHHHHHHHHHHHHHTTEEEEEEECCGGGGGGCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGE
T ss_pred CCceEEeeecCCCcchhHhhHHHHHHHHHHHHCCCcEEEEEeeeEEEecCCCcchHHHHHHHHHHHHHHHHHcCCChHHe
Confidence 47899999999999999996653346889998 79999999999999973 578999999999999999999999999
Q ss_pred EEEEcCCc-hhhhHHHHHHh----ccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcch
Q 021028 153 SVFVQSHV-RAHVELMWLLS----SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (318)
Q Consensus 153 ~i~~qS~~-~~~~el~w~L~----~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~ 227 (318)
+||+||+| ++|.+++|.+. +.+|+++|.++.+|+.+.. +++++|+|+||+||||||++|++|+||||.||+
T Consensus 119 ~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~----~~i~~g~f~YPlLQAaDil~~~ad~vpvG~DQ~ 194 (690)
T 3p0j_A 119 LFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTE----GTLTAAQVLYPLMQCCDIFFLKADICQLGLDQR 194 (690)
T ss_dssp EEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-----------CCCCCSCSSHHHHHHHHHHHTTCSEECCBGGGH
T ss_pred EEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhcc----CCCchhhHhhHHHHHHHHHhhCCCEEeccccHH
Confidence 99999984 67899999754 5899999999999875322 248999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 228 ~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+|++++||+|+|||++|+ |..+.. ++||||+||++|||||.+ +|+|+|+|+|++|++|
T Consensus 195 ~~l~l~Rdla~r~n~~~~-----------------p~~l~~---~~l~gL~dG~~KMSKS~~--~~~I~L~D~p~~i~kK 252 (690)
T 3p0j_A 195 KVNMLAREYCDLIGRKLK-----------------PVILSH---HMLAGLKQGQAKMSKSDP--DSAIFMEDTEEDVARK 252 (690)
T ss_dssp HHHHHHHHHHHHTTCCCC-----------------CEEEEB---CCCCCSSTTCSSCBTTBG--GGSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCC-----------------ceEeec---CeeecCCCCCcCCCCCCC--CCeeeccCCHHHHHHH
Confidence 999999999999996532 444433 689999899889999996 4899999999999999
Q ss_pred hccccCCCC
Q 021028 308 IKRCKTDSS 316 (318)
Q Consensus 308 I~~A~Td~~ 316 (318)
||+|+||++
T Consensus 253 I~~A~td~~ 261 (690)
T 3p0j_A 253 IRQAYCPRV 261 (690)
T ss_dssp HHTSCCCSS
T ss_pred HHhCcCCCc
Confidence 999999975
No 17
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.7e-52 Score=400.91 Aligned_cols=209 Identities=25% Similarity=0.398 Sum_probs=187.4
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~-d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+++++|+||+|||.+||||+ +++.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+||+|++|
T Consensus 31 ~~~~vy~G~~PTg~lHlG~l-~~l~~~~~lq~~g~~~~~~i~D~~a~~~d~~~~~~i~~~~~~~~~~~~a~Gldp~k~~i 109 (323)
T 2cyb_A 31 EKPRAYVGYEPSGEIHLGHM-MTVQKLMDLQEAGFEIIVLLADIHAYLNEKGTFEEIAEVADYNKKVFIALGLDESRAKF 109 (323)
T ss_dssp SCCEEEEEECCCSCCBHHHH-HHHHHHHHHHHTTCEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCCTTTCEE
T ss_pred CCCEEEECcCCCCcchHHHH-HHHHHHHHHHHCCCcEEEEECCceeEcCCCCCHHHHHHHHHHHHHHHHHhCCCccceEE
Confidence 47899999999999999996 55789999998 899999999999999865 8999999999999999999999999999
Q ss_pred EEcCCch---hhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHHH
Q 021028 155 FVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLE 231 (318)
Q Consensus 155 ~~qS~~~---~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~ 231 (318)
|+||+|+ +|.++.|.++|.+++++|.|+.++.. +.. +..++|+|.||+|||||++++++|+||||.||++|++
T Consensus 110 ~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~--~~~--~~~~~g~~~YP~lqaaD~l~~~~~~v~~G~DQ~~~~~ 185 (323)
T 2cyb_A 110 VLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS--RRK--EDPMVSQMIYPLMQALDIAHLGVDLAVGGIDQRKIHM 185 (323)
T ss_dssp EEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTC--SCS--SSCBTHHHHHHHHHHHHHHHTTCSEEEEEGGGHHHHH
T ss_pred EEcchhccchHHHHHHHHHhCccCHHHHhccchhhc--ccc--CCCCchhhhhHHHHHHHHHhcCCCEEEechhhHHHHH
Confidence 9999995 68899999999999999999866542 211 3459999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhccc
Q 021028 232 LTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKRC 311 (318)
Q Consensus 232 l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~A 311 (318)
++|++|+|+|.. .|..+.. ++||+| +| +||||| + +|+|+|+|+|++|++||++|
T Consensus 186 l~rdla~~~~~~------------------~p~~l~~---pll~~l-~G-~KMSKS-~--~n~I~l~d~p~~i~~Ki~~a 239 (323)
T 2cyb_A 186 LARENLPRLGYS------------------SPVCLHT---PILVGL-DG-QKMSSS-K--GNYISVRDPPEEVERKIRKA 239 (323)
T ss_dssp HHHHHGGGGTCC------------------CCEEEEE---CCCBCT-TS-SBCCTT-T--TCSCBTTCCHHHHHHHHHTS
T ss_pred HHHHHHHhcCCC------------------CceEEec---CcccCC-CC-CcccCC-c--CceeCCCCCHHHHHHHHHhc
Confidence 999999999842 3666665 679999 67 899999 3 68999999999999999999
Q ss_pred cCCCC
Q 021028 312 KTDSS 316 (318)
Q Consensus 312 ~Td~~ 316 (318)
+||+.
T Consensus 240 ~td~~ 244 (323)
T 2cyb_A 240 YCPAG 244 (323)
T ss_dssp CCCTT
T ss_pred CCCCC
Confidence 99974
No 18
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=3.4e-52 Score=407.46 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=181.1
Q ss_pred CCceEEEeeCCCCccchhhHHHH-HHHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCce
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGA-IKNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~-l~~~~~LQ~--g~~v~ilIaD~hA~t~~-~d~~~i~~~~~~~~~~llA~GiDpek~ 152 (318)
+++++|+||+|||.+|||||+++ +.+| ||+ ++.++|+|+|+||++.+ .+++++++++++++++|+|+|+||+|+
T Consensus 81 ~~~~vysG~~PTG~lHLGh~v~~~~~~~--lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt 158 (386)
T 3hzr_A 81 KPTFIFIQKYPQKEVALEEYITLEFARY--LQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKT 158 (386)
T ss_dssp CCEEEEEEECCCSSCBGGGHHHHHHHHH--HHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGE
T ss_pred CCeEEEeccCCCCCccHHHHHHHHHHHH--HHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 57899999999999999999998 4677 887 57788999999999974 699999999999999999999999999
Q ss_pred EEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhh--------ccc-ccEEEe
Q 021028 153 SVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQ-SDFVPV 222 (318)
Q Consensus 153 ~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil--------~~~-adivpv 222 (318)
+||+||+|.+ .+...+.+|.|+.+|+++.++.+ .+++++|+|+||+|||||++ .++ +|+|||
T Consensus 159 ~i~~qS~~~~--------~~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~~~a~~Vpv 230 (386)
T 3hzr_A 159 FIYTDYQYFG--------KMYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSSPARCLVLD 230 (386)
T ss_dssp EEEEHHHHHH--------HHHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSSCCEEEEEE
T ss_pred EEEeccHHHH--------HHHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCCCCcccccc
Confidence 9999999975 33445678999999999988776 46799999999999999877 355 999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHH
Q 021028 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302 (318)
Q Consensus 223 G~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe 302 (318)
|.||++|++++||+|+|+|. +.|..+.. ++|||| ||.+|||||++ +|+|+|+|+|+
T Consensus 231 G~DQ~~hl~l~Rdla~r~n~------------------~~p~~l~~---~~l~gL-dG~~KMSKSd~--~~~I~L~D~p~ 286 (386)
T 3hzr_A 231 SIKNVQFHSIIDQIATTLNF------------------IQPTVLFH---KMVPLL-SGVTKFDIPSD--HNSILLSDNAK 286 (386)
T ss_dssp EGGGHHHHHHHHHHHHHHTC------------------CCCEEEEE---CCCCCT-TCTTCCCCCCT--TTSCBTTCCHH
T ss_pred ccchHHHHHHHHHHHHHcCC------------------CCceEeec---CeeeCC-CCCCccCcCCC--CCeeecCCCHH
Confidence 99999999999999999983 34755533 789999 66569999987 59999999999
Q ss_pred HHHHhhcc-ccCCCC
Q 021028 303 VIANKIKR-CKTDSS 316 (318)
Q Consensus 303 ~I~~KI~~-A~Td~~ 316 (318)
+|++|||+ |+||+.
T Consensus 287 ~i~kKI~k~A~t~g~ 301 (386)
T 3hzr_A 287 QVERKINKLAFSGGR 301 (386)
T ss_dssp HHHHHHHHTSCCCCC
T ss_pred HHHHHHHHhccCCCC
Confidence 99999999 999864
No 19
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=6.9e-52 Score=407.47 Aligned_cols=207 Identities=20% Similarity=0.269 Sum_probs=181.6
Q ss_pred CCCceEEEeeCCCC-ccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 021028 76 SVKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 76 ~~~~~i~tGi~PTG-~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpe 150 (318)
.+++++|+|++||| .+|||||++++ .+| ||+ ++.++|+|||+||+++ +.+++++++++++++++|+|+|+||+
T Consensus 99 ~~p~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~ 176 (406)
T 3tze_A 99 NRPFYLYTGRGPSSKTMHIGHTIPFLLCKY--MQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPK 176 (406)
T ss_dssp TCCEEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCCeEEEEeeCCCCCcccHHHHHHHHHHHH--HHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCcc
Confidence 35889999999998 79999999984 567 887 6788999999999865 67899999999999999999999999
Q ss_pred ceEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhh--------cccccEEE
Q 021028 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDIL--------LYQSDFVP 221 (318)
Q Consensus 151 k~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil--------~~~adivp 221 (318)
|+.||.||+|.+ .+..++.+|.|+.+|+++.++.+ .+++++|+|+||+|||||++ .+++|+||
T Consensus 177 k~~i~~qs~~~~--------~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~a~lvp 248 (406)
T 3tze_A 177 LTYIFSNVEASH--------HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGAMCLVP 248 (406)
T ss_dssp GEEEEEHHHHGG--------GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTCEEEEE
T ss_pred ceEEEeccHhHH--------HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCCCeEEe
Confidence 999999999875 12335668999999999988876 36799999999999999955 46799999
Q ss_pred ecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CCccCCCCCCCCeEeccCC
Q 021028 222 VGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINLLDP 300 (318)
Q Consensus 222 vG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~-~KMSKS~p~~~s~I~L~D~ 300 (318)
||.||++|++++||+|+|+| ++.|..+.+ ++|||| ||. +|||||.| +|+|+|+|+
T Consensus 249 vG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--~~~I~L~D~ 304 (406)
T 3tze_A 249 AAVDQDPFFRLARDKAKALG------------------EKKPSSIYV---SLLPDL-KGVNRKMSASDP--NSSIYLDDA 304 (406)
T ss_dssp EEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CCCCCT-TSCCCCSSCSCG--GGSCBTTCC
T ss_pred eccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCcccCCCC
Confidence 99999999999999999998 345777754 789999 665 69999997 589999999
Q ss_pred HHHHHHhhcc-ccCCCC
Q 021028 301 KDVIANKIKR-CKTDSS 316 (318)
Q Consensus 301 pe~I~~KI~~-A~Td~~ 316 (318)
|++|++|||+ |+||+.
T Consensus 305 p~~I~kKI~k~A~td~~ 321 (406)
T 3tze_A 305 QDTIRKKIIAYAYSGGR 321 (406)
T ss_dssp HHHHHHHHHHHCCCCCC
T ss_pred HHHHHHHHHhhccCCCc
Confidence 9999999999 999974
No 20
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.3e-51 Score=401.95 Aligned_cols=211 Identities=24% Similarity=0.212 Sum_probs=173.0
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC-CCCHHHHHHHHH---H--HHHHHHHcCCCCC
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PYDTQQLSKATR---E--TAAIYLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~-~~d~~~i~~~~~---~--~~~~llA~GiDpe 150 (318)
+++++|+||+|||.+|||||+++++.|..+|.|++++|+|||+||+|+ +.+++++.++.. + +.+.|+|+|+||+
T Consensus 34 ~~~~vy~G~~PTG~lHlG~~~~~l~~~~~~q~g~~~i~~I~D~ha~t~~~~~~~~l~~~~~~~~~~~i~~~lla~Gldp~ 113 (372)
T 1n3l_A 34 RELKIYWGTATTGKPHVAYFVPMSKIADFLKAGCEVTILFADLHAYLDNMKAPWELLELRVSYYENVIKAMLESIGVPLE 113 (372)
T ss_dssp SCCEEEEEECCSSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHTCCCT
T ss_pred CCCEEEeCcCCCCcccHHHHHHHHHHHHHHHCCCCEEEEEcCCceeeCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999877777779999999999999997 566666644432 2 3335799999999
Q ss_pred ceEEEEcCCch---hhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcch
Q 021028 151 KASVFVQSHVR---AHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (318)
Q Consensus 151 k~~i~~qS~~~---~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~ 227 (318)
++.||+||+|+ ++.++.|.++|.+|+.+++++.. ...+. .+++++|+|+||+||||||+++++|+||||.||+
T Consensus 114 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~---~v~~~-~~~~~~g~~~YP~lQaaDil~~~a~~v~~G~DQ~ 189 (372)
T 1n3l_A 114 KLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGA---EVVKQ-VEHPLLSGLLYPGLQALDEEYLKVDAQFGGIDQR 189 (372)
T ss_dssp TEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTT---TTSCC-CSSCCHHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred hcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchh---hhhcc-cCCCcceeeecchHhhccHHHhcCCEEEcChhHH
Confidence 99999999995 67788899999999999888632 01111 2578999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 228 ~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+|++++|+|+++++ +..|..+.. ++||+| || +|||||.+ +++|+|+|+|++|++|
T Consensus 190 ~~~~l~rdl~~r~~------------------~~~p~~l~~---pll~gl-dG-~KMSKS~~--ns~I~L~d~p~~i~kK 244 (372)
T 1n3l_A 190 KIFTFAEKYLPALG------------------YSKRVHLMN---PMVPGL-TG-SKMSSSEE--ESKIDLLDRKEDVKKK 244 (372)
T ss_dssp HHHHHHHHHGGGGT------------------CCCCEEEEE---CCCCCS-SC-C---------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcC------------------CCCCEEEec---CccCCC-Cc-ccccCCCC--CCeEeccCCHHHHHHH
Confidence 99999999999986 235777765 679999 77 79999997 3689999999999999
Q ss_pred hccccCCCC
Q 021028 308 IKRCKTDSS 316 (318)
Q Consensus 308 I~~A~Td~~ 316 (318)
||+|+||+.
T Consensus 245 i~~A~td~~ 253 (372)
T 1n3l_A 245 LKKAFCEPG 253 (372)
T ss_dssp HHTCCCCTT
T ss_pred HHHccCCCC
Confidence 999999985
No 21
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=7.7e-52 Score=395.38 Aligned_cols=202 Identities=25% Similarity=0.327 Sum_probs=178.7
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCC-CHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPY-DTQQLSKATRETAAIYLACGIDNSKASV 154 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~-d~~~i~~~~~~~~~~llA~GiDpek~~i 154 (318)
+++++|+||+|||.+|||| ++.+.+|++||+ |++++|+|||+||++++. +++++++++++++++|+|+|+| ++|
T Consensus 27 ~~~~vy~G~~PTg~lHlGh-l~~l~~~~~lQ~~g~~~~~~i~D~~a~~~~~~~~e~i~~~~~~~~~~~~a~G~d---~~~ 102 (314)
T 2zp1_A 27 DEKSAYIGFEPSGKIHLGH-YLQIKKMIDLQNAGFDIIILLADLAAYLNQKGELDEIRKIGDYNKKVFEAMGLK---AKY 102 (314)
T ss_dssp SSEEEEEEECCCSSCBHHH-HHHHHHHHHHHHTTEEEEEEECHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTCC---CEE
T ss_pred CCCEEEEccCCCCCcchhh-HHHHHHHHHHHHCCCCEEEEEecceEecCCCCCHHHHHHHHHHHHHHHHhcCCC---eEE
Confidence 4789999999999999999 666789999998 799999999999999854 8999999999999999999998 789
Q ss_pred EEcCCchhhhHHHHH----HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcchHHH
Q 021028 155 FVQSHVRAHVELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHL 230 (318)
Q Consensus 155 ~~qS~~~~~~el~w~----L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~~hi 230 (318)
++||+|..+ ..+|. +++.+++++|.|+.+|+.+. . +..++|+|+||+||||||+++++|+||||.||++|+
T Consensus 103 ~~qs~~~~~-~~~~~~~~~l~~~~t~~~l~~~~~~~~~~--~--~~~~~g~~~YP~LQaaDil~~~~~~v~~G~DQ~~~~ 177 (314)
T 2zp1_A 103 VYGSEFQLD-KDYTLNVYRLALKTTLKRARRSMELIARE--D--ENPKVAEVIYPIMQVNTSHYLGVDVAVGGMEQRKIH 177 (314)
T ss_dssp EEGGGTTTS-HHHHHHHHHHHHHSCHHHHHHHTTTTSCC--C--SSCCTHHHHHHHHHHHHHHHHTCSEEEEEGGGHHHH
T ss_pred EECChhhcc-hHHHHHHHHHHCcCcHHHHhccchhhhhc--c--CCCCchhhhhHHHHHHhHHhhCCCEEEcChhHHHHH
Confidence 999999766 45565 99999999999999887532 2 224999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhcc
Q 021028 231 ELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR 310 (318)
Q Consensus 231 ~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~ 310 (318)
+++|++++. .|..+.. ++||+| +|.+||||| + +|+|+|+|+|++|++|||+
T Consensus 178 ~l~R~i~~~----------------------~~~~~~~---~~l~~l-~G~~KMSKS-~--~~~I~L~d~~~~i~~KI~~ 228 (314)
T 2zp1_A 178 MLARELLPK----------------------KVVCIHN---PVLTGL-DGEGKMSSS-K--GNFIAVDDSPEEIRAKIKK 228 (314)
T ss_dssp HHHHHHSSS----------------------CCEEEEE---CCCBCT-TSSSBCCTT-T--TCSCBTTCCHHHHHHHHHH
T ss_pred HHHHHhcCC----------------------CcEEeec---cccccC-CcccccCCC-C--cceecCCCCHHHHHHHHHh
Confidence 999998851 2545444 689999 687899999 4 6899999999999999999
Q ss_pred ccCCCC
Q 021028 311 CKTDSS 316 (318)
Q Consensus 311 A~Td~~ 316 (318)
|+||+.
T Consensus 229 a~td~~ 234 (314)
T 2zp1_A 229 AYCPAG 234 (314)
T ss_dssp SCCCTT
T ss_pred CCCCCC
Confidence 999985
No 22
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.5e-51 Score=394.60 Aligned_cols=207 Identities=14% Similarity=0.151 Sum_probs=182.3
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHH---HHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKAT---RETAAI 141 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~---~~~~~~ 141 (318)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ +. +++++++++ ++.++.
T Consensus 32 ~~~~vy~G~~PTg~slHlGh~l~-l~~~~~lQ~~g~~~~~~i~D~~a~~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~~ 110 (322)
T 2yxn_A 32 GPIALVCGFDPTADSLHLGHLVP-LLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVDKIRKQVAP 110 (322)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHGG
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHcCCcEEEEEccceeeecCCCCcccccccCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999 99999996 679999998 7999999999999998 43 889999999 777778
Q ss_pred HHHcCCCCCceEEEEcCCchh-hhHHHHH--HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc---
Q 021028 142 YLACGIDNSKASVFVQSHVRA-HVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (318)
Q Consensus 142 llA~GiDpek~~i~~qS~~~~-~~el~w~--L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~--- 215 (318)
|+|+|+||+|+.||.||+|.. +.++.|+ ++++++++++.++.+||++.... .+++++|+|+||+||||||+++
T Consensus 111 ~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~-~~~is~g~f~YP~LQaaDil~l~~~ 189 (322)
T 2yxn_A 111 FLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRE-DQGISFTEFSYNLLQGYDFACLNKQ 189 (322)
T ss_dssp GSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCT-TCCCCHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccC-CCCccchhhhHHHHHHHHHHHHhcc
Confidence 889999999999999999965 4777787 89999999999999998655421 2578999999999999999999
Q ss_pred -cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 216 -QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 216 -~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
++|+++||.||++|++++||||+|+|.. .|..+.. ++||++ || +|||||.+ |+
T Consensus 190 ~~~~v~~gG~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~gl-dG-~KMSKS~~---n~ 243 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQN------------------QVFGLTV---PLITKA-DG-TKFGKTEG---GA 243 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTEETT---EE
T ss_pred CCceEEecCchhHHHHHHHHHHHHHhCCC------------------Cceeecc---CccCCC-Cc-ccccCCCC---Ce
Confidence 9999999999999999999999999941 1333433 679999 88 79999985 69
Q ss_pred EeccC---CHHHHHHhhccc
Q 021028 295 INLLD---PKDVIANKIKRC 311 (318)
Q Consensus 295 I~L~D---~pe~I~~KI~~A 311 (318)
|+|+| +|+++++||+++
T Consensus 244 I~L~d~~tsp~~~~~ki~~~ 263 (322)
T 2yxn_A 244 VWLDPKKTSPYKFYQFWINT 263 (322)
T ss_dssp CBSSTTTSCHHHHHHHHHTC
T ss_pred eeccCCCCCHHHHHHHHhCC
Confidence 99999 999999999997
No 23
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-51 Score=402.28 Aligned_cols=212 Identities=23% Similarity=0.200 Sum_probs=173.7
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhccCcEEEEEeccceecC-CC-CHHHHHHHH----HHHHHHHHHcCCCCC
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL-PY-DTQQLSKAT----RETAAIYLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~-~~-d~~~i~~~~----~~~~~~llA~GiDpe 150 (318)
+++++|+||+|||.+|||||+++++.|..+|.|++++|+|+|+||+++ +. ..+.++.++ +.+.+.|+|+|+||+
T Consensus 38 ~p~~vy~G~~PTG~LHlG~~~~al~~~~~~q~g~~~ii~I~D~ha~t~~~~~~~e~~~~~~~~~~~~i~~~l~a~Gldp~ 117 (394)
T 2dlc_X 38 RHLKLYWGTAPTGRPHCGYFVPMTKLADFLKAGCEVTVLLADLHAFLDNMKAPLEVVNYRAKYYELTIKAILRSINVPIE 117 (394)
T ss_dssp SCCEEEEEECCCSCCBGGGHHHHHHHHHHHHTTCEEEEEECHHHHHHTTTSSCTTHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHcCCcEEEEEcCCccccCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 467999999999999999999999999888889999999999999997 43 445555554 344457889999999
Q ss_pred ceEEEEcCCc---hhhhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEecCcch
Q 021028 151 KASVFVQSHV---RAHVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPVGEDQK 227 (318)
Q Consensus 151 k~~i~~qS~~---~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpvG~DQ~ 227 (318)
++.||+||+| .++.++.|.++|++++++++|+.+.+ .+ . .+++++|+|+||+|||+|++++++|+||||.||+
T Consensus 118 k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~--~r-~-~~~~~~g~~~YP~lQaaD~l~~~~~~v~~G~DQ~ 193 (394)
T 2dlc_X 118 KLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADV--VK-Q-VANPLLSGLIYPLMQALDEQFLDVDCQFGGVDQR 193 (394)
T ss_dssp TCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTT--SC-C-CSSCCTHHHHHHHHHHHHHHHTTCSEEEEEGGGH
T ss_pred HcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhh--hc-c-cCCccceeeechhHhhccHhhhCCCEEecCccHH
Confidence 9999999999 45778899999999999999875421 11 2 2568999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHh
Q 021028 228 QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANK 307 (318)
Q Consensus 228 ~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~K 307 (318)
+|++++|++++++|. ..|..++. ++||+| +|++|||||++ +++|+|+|+|++|++|
T Consensus 194 ~~~~l~rdl~~r~~~------------------~~p~~l~~---pll~gl-~~G~KMSKS~~--ns~I~L~D~p~~i~kK 249 (394)
T 2dlc_X 194 KIFVLAEENLPSLGY------------------KKRAHLMN---PMVPGL-AQGGKMSASDP--NSKIDLLEEPKQVKKK 249 (394)
T ss_dssp HHHHHHHHHGGGGTC------------------CCCEEEEE---CCCCCC-C------------CCSCBTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC------------------CCCEEEec---ccccCC-CCCCcCCCCCC--CCEEeccCCHHHHHHH
Confidence 999999999999982 34777776 679999 63389999997 3679999999999999
Q ss_pred hccccCCCC
Q 021028 308 IKRCKTDSS 316 (318)
Q Consensus 308 I~~A~Td~~ 316 (318)
||+|+||+.
T Consensus 250 I~ka~Td~~ 258 (394)
T 2dlc_X 250 INSAFCSPG 258 (394)
T ss_dssp HHHSCCCTT
T ss_pred HHHhcCCCC
Confidence 999999984
No 24
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=2e-50 Score=400.25 Aligned_cols=206 Identities=18% Similarity=0.285 Sum_probs=172.7
Q ss_pred CCceEEEeeCCC-CccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 021028 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~~--~d~~~i~~~~~~~~~~llA~GiDpe 150 (318)
+++++|+||+|| |.+|||||++++ .+| ||+ |++++|+|||+||++++ .+++.+++++++++++|+|+|+||+
T Consensus 101 ~~~~vy~G~dPTag~LHLGh~v~~~~l~~--lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~ 178 (432)
T 2ip1_A 101 KPFFLYTGRGPSSDSMHLGHMIPFVFTKW--LQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPK 178 (432)
T ss_dssp CCCEEEEEECCCSSCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEEeecCCCCCccHHHHHHHHHHHH--HHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 478999999999 899999999976 355 886 78899999999998873 5789999999999999999999999
Q ss_pred ceEEEEcCCch--hhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhc-----------cc
Q 021028 151 KASVFVQSHVR--AHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------YQ 216 (318)
Q Consensus 151 k~~i~~qS~~~--~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~-----------~~ 216 (318)
|++||+||+|. .+.++.| +++|+++++++.++++ .+++++|+|+||+||||||++ ++
T Consensus 179 k~~i~~nSd~~~~~~~~~~~---------~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~ 249 (432)
T 2ip1_A 179 NTFIFSDLQYMGGAFYETVV---------RVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKT 249 (432)
T ss_dssp GEEEEEHHHHCSHHHHHHHH---------HHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTC
T ss_pred ceEEEeCchhhhhhHHHHHH---------HHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCC
Confidence 99999999996 5666666 3568888888877664 367899999999999999999 57
Q ss_pred ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEe
Q 021028 217 SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRIN 296 (318)
Q Consensus 217 adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~ 296 (318)
+++||||.||++|++++||+|+|+| ++.|..+.. ++||+|+++++|||||.+ +++|+
T Consensus 250 ~~lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~ll~gLdG~~~KMSKS~~--nsaI~ 306 (432)
T 2ip1_A 250 PCLIPCAIDQDPYFRVCRDVADKLK------------------YSKPALLHS---RFFPALQGSTTKMSASDD--TTAIF 306 (432)
T ss_dssp CEEEEEEGGGHHHHHHHHHHHHHHT------------------SCCCEEEEE---CCCCCTTC--------CG--GGCCB
T ss_pred ceEEEeccCcHHHHHHHHHHHHHhC------------------CCCceeecc---ccccCCCCCccccCCCCC--CCeEe
Confidence 9999999999999999999999998 245776654 789999443479999996 35999
Q ss_pred ccCCHHHHHHhhcc-ccCCCC
Q 021028 297 LLDPKDVIANKIKR-CKTDSS 316 (318)
Q Consensus 297 L~D~pe~I~~KI~~-A~Td~~ 316 (318)
|+|+|++|++||++ |+||+.
T Consensus 307 L~d~p~~i~~KI~~yA~t~~~ 327 (432)
T 2ip1_A 307 MTDTPKQIQKKINKYAFSGGQ 327 (432)
T ss_dssp TTCCHHHHHHHHHHHSCCCSC
T ss_pred ccCCHHHHHHHhhhhcccCCc
Confidence 99999999999999 999873
No 25
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=3.3e-50 Score=398.79 Aligned_cols=204 Identities=22% Similarity=0.340 Sum_probs=178.8
Q ss_pred CCceEEEeeCCC-CccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 021028 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP-YDTQQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~~-~d~~~i~~~~~~~~~~llA~GiDpek 151 (318)
+++++|+||+|| |.+|||||++++ .+| ||+ |++++|+|||+|++++. .+++++++++++++++|+|+|+||+|
T Consensus 107 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 184 (437)
T 1r6u_A 107 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 184 (437)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccc
Confidence 478999999999 899999999977 455 885 89999999999999984 68899999999999999999999999
Q ss_pred eEEEEcCCchh----hhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhc-----------c
Q 021028 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (318)
Q Consensus 152 ~~i~~qS~~~~----~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~-----------~ 215 (318)
++||.||+|.. +.++.| +|+|++++++++++++ .+++++|+|+||+||||||++ +
T Consensus 185 t~i~~nSd~~~~l~~~~~l~~---------~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 255 (437)
T 1r6u_A 185 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 255 (437)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhhhHHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccC
Confidence 99999999975 444433 5668888888877665 467899999999999999999 7
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CCCccCCCCCCCCe
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQSR 294 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg-~~KMSKS~p~~~s~ 294 (318)
++|+||||.||++|++++||+|+|+| ++.|..+.. ++||+| || ++|||||.+ +++
T Consensus 256 ~~~lVpvG~DQ~~~i~l~Rdla~r~~------------------~~~P~~l~~---pll~gL-dG~~~KMSKS~~--nsa 311 (437)
T 1r6u_A 256 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NSS 311 (437)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTSS--SSC
T ss_pred CceEEEeehhhHHHHHHHHHHHHHhC------------------CCCceEeec---ccccCC-CCCccccCCCCC--CCe
Confidence 88999999999999999999999998 245777554 789999 55 479999997 469
Q ss_pred EeccCCHHHHHHhhcc-ccCCC
Q 021028 295 INLLDPKDVIANKIKR-CKTDS 315 (318)
Q Consensus 295 I~L~D~pe~I~~KI~~-A~Td~ 315 (318)
|+|+|+|++|++||++ |+||+
T Consensus 312 I~L~D~p~~I~kKI~~ya~td~ 333 (437)
T 1r6u_A 312 IFLTDTAKQIKTKVNKHAFSGG 333 (437)
T ss_dssp CBTTCCHHHHHHHHHHTSCCCB
T ss_pred eeccCCHHHHHHHhhccccCCC
Confidence 9999999999999999 99997
No 26
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=2.9e-50 Score=399.75 Aligned_cols=207 Identities=26% Similarity=0.349 Sum_probs=178.3
Q ss_pred CCceEEEeeCCC-CccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecCC--CCHHHHHHHHHHHHHHHHHcCCCCC
Q 021028 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITLP--YDTQQLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~~--~d~~~i~~~~~~~~~~llA~GiDpe 150 (318)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|+|+|+++.+ .+++++++++++++++|+|+|+||+
T Consensus 90 ~p~~vytG~dPTagsLHLGH~v~~~~l~~--lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpe 167 (451)
T 3foc_A 90 HPIYIYTGRGPSSGALHLGHLLPFIFTKY--LQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPD 167 (451)
T ss_dssp CCEEEEEEECCCSSCCBHHHHHHHHHHHH--HHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGG
T ss_pred CCeEEEecCCCCCCCccHHHHHHHHHHHH--HHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 478999999999 789999999987 566 887 56788999999999863 5899999999999999999999999
Q ss_pred ceEEEEcCCchh---hhHHHHHHhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccc----------
Q 021028 151 KASVFVQSHVRA---HVELMWLLSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQS---------- 217 (318)
Q Consensus 151 k~~i~~qS~~~~---~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~a---------- 217 (318)
|++||+||+|.+ +.++.|.+++.+|++++.+...|+ +++++|+|+||+||||||++++.
T Consensus 168 kt~i~~nSd~~~~~~~~~~l~~L~r~~Tv~~m~~~~~f~--------~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~ 239 (451)
T 3foc_A 168 KTFIFINSQYLSLKNRYRFSCLVDRMLPISQLRASFGFS--------NDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPL 239 (451)
T ss_dssp GEEEEEHHHHTTSTTHHHHHHHHHHTCCHHHHHHHHCCC--------SSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBC
T ss_pred ceEEEeCchhhcchhHHHHHHHHHhhCCHHHHHhhcccC--------CCCchHHHhhHHHHHHHHHHhhcCCCCcccccc
Confidence 999999999964 567777788888888877765542 56899999999999999984333
Q ss_pred --------------------------------c-----------------EEEecCcchHHHHHHHHHHHHhhhhhCCcc
Q 021028 218 --------------------------------D-----------------FVPVGEDQKQHLELTRELAERVNYLYGGRK 248 (318)
Q Consensus 218 --------------------------------d-----------------ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~ 248 (318)
| +||||.||+||++++||||+|||+
T Consensus 240 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~------ 313 (451)
T 3foc_A 240 PVGTGNEDAADAVSTKKASKKTPKKDAVLSPVHVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGH------ 313 (451)
T ss_dssp C-------------------------CCCCHHHHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTS------
T ss_pred ccccccchhhhhhhhhhccccccchhhhhhhcccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCC------
Confidence 3 999999999999999999999983
Q ss_pred ccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHHHHHHhhcc-ccCCCC
Q 021028 249 WKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKDVIANKIKR-CKTDSS 316 (318)
Q Consensus 249 ~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe~I~~KI~~-A~Td~~ 316 (318)
+.|..+.+ ++||||+++++|||||.+ +|+|+|+|+|++|++|||+ |+||+.
T Consensus 314 ------------~~p~~~~~---~~l~gLdG~~~KMSKS~~--ns~I~l~D~p~~I~kKI~k~A~Td~~ 365 (451)
T 3foc_A 314 ------------PKNAYLLG---KFLPGLQGSGTKMSASDP--NSAIYLTDTPAQIKNKINRYAFSGGR 365 (451)
T ss_dssp ------------CCCEEEEE---CCCCBTTBTTCCCCTTCG--GGSCBTTCCHHHHHHHHHHHSCCCSC
T ss_pred ------------CCCeeecC---CcccCCCCCCCccCCCCC--CCeeeecCCHHHHHHHHhhhccCCCC
Confidence 34666554 789999544579999997 4799999999999999999 999974
No 27
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-49 Score=394.58 Aligned_cols=206 Identities=15% Similarity=0.138 Sum_probs=181.1
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C--------CCHHHHHHHHHHH---HHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P--------YDTQQLSKATRET---AAIY 142 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~--------~d~~~i~~~~~~~---~~~l 142 (318)
+++++|+||+|||+ +||||+++ +.+|++||+ |++++++|||+||+++ | .+++++++|++++ ++.|
T Consensus 31 ~~~~iy~G~dPTg~sLHLGhlv~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsk~~~R~~~~~e~i~~n~~~~~~~~~~~ 109 (432)
T 2jan_A 31 GPMTVYAGFDPTAPSLHAGHLVP-LLTLRRFQRAGHRPIVLAGGATGMIGDPRDVGERSLNEADTVAEWTERIRGQLERF 109 (432)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECHHHHHHHCCCCTTTSGGGHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCcCHHHHHH-HHHHHHHHHCCCcEEEEEcCcEEEccCCcccccccCCCHHHHHHHHHHHHHHHHHH
Confidence 47899999999996 99999775 679999998 8999999999999997 5 5779999999766 5668
Q ss_pred HHcCCCCCceEEEEcCCchhh-hHHHHH--HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc----
Q 021028 143 LACGIDNSKASVFVQSHVRAH-VELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY---- 215 (318)
Q Consensus 143 lA~GiDpek~~i~~qS~~~~~-~el~w~--L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~---- 215 (318)
+++|+||+|++||+||+|..+ ..+.|+ +++.+++++|.++.+||++. . .+++++|+|+||+||||||+++
T Consensus 110 La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~--~-~~~is~~ef~YPlLQaaDil~l~~~~ 186 (432)
T 2jan_A 110 VDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRL--A-GEGISYTEFSYLLLQANDYVELHRRH 186 (432)
T ss_dssp SCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHT--S-TTCCBHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhh--c-CCCcchHHHHHHHHHHHHHHHHhccC
Confidence 899999999999999999764 588888 89999999999999999765 2 3678999999999999999999
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeE
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRI 295 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I 295 (318)
++|+||||.||++|++++||||+|+|.. .|..+.. ++||++ || +|||||.+ +++|
T Consensus 187 ~~~i~~gG~DQ~~ni~lgrdlarr~~~~------------------~~~~l~~---plL~~l-dG-~KMSKS~~--nsaI 241 (432)
T 2jan_A 187 GCTLQIGGADQWGNIIAGVRLVRQKLGA------------------TVHALTV---PLVTAA-DG-TKFGKSTG--GGSL 241 (432)
T ss_dssp CCCEEEECSTTHHHHHHHHHHHHHHHCC------------------CCEEEEC---CCCBCT-TS-CBTTBCSS--SCBC
T ss_pred CCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-CcCCCCCC--CCeE
Confidence 9999999999999999999999999842 1333333 678999 88 79999986 3599
Q ss_pred eccC---CHHHHHHhhccc
Q 021028 296 NLLD---PKDVIANKIKRC 311 (318)
Q Consensus 296 ~L~D---~pe~I~~KI~~A 311 (318)
+|+| +|+++++||+++
T Consensus 242 ~L~d~~tsp~~i~qki~~~ 260 (432)
T 2jan_A 242 WLDPQMTSPYAWYQYFVNT 260 (432)
T ss_dssp BSSTTTSCHHHHHHHHHTC
T ss_pred EccCCCCCHHHHHHHHhcC
Confidence 9999 999999999996
No 28
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=5.4e-50 Score=392.81 Aligned_cols=206 Identities=21% Similarity=0.319 Sum_probs=164.5
Q ss_pred CCceEEEeeCCC-CccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCC
Q 021028 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNS 150 (318)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~--~~d~~~i~~~~~~~~~~llA~GiDpe 150 (318)
+++++|+||+|| |.+|||||++++ .+| ||+ ++.++|+|||+|+++. ..+++++++++++++++|+|+|+||+
T Consensus 73 ~~~~vy~G~~PTa~~lHlGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~ 150 (393)
T 3hv0_A 73 ELFYLYTGRGPSSESLHVGHLVPFLFTKY--LQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPE 150 (393)
T ss_dssp CCCEEEEEECCSSSSCBSTTHHHHHHHHH--HHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCeEEEeCCCCCCCCccHHHHHHHHHHHH--HHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCc
Confidence 478999999999 679999999987 456 888 5678999999999665 46899999999999999999999999
Q ss_pred ceEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhc-------c-c---cc
Q 021028 151 KASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-------Y-Q---SD 218 (318)
Q Consensus 151 k~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~-------~-~---ad 218 (318)
|++||+||+|... +| .++.+|.|+.+++++.++.+ .+++++|+|+||+||||||+. + + ++
T Consensus 151 kt~i~~ns~~~~~---~~-----~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~ 222 (393)
T 3hv0_A 151 LTFIFTNLEYIAE---LY-----PDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHC 222 (393)
T ss_dssp TEEEEEHHHHHHH---HH-----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCE
T ss_pred ceEEEECCHHHHH---HH-----HHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCce
Confidence 9999999998642 12 23446777777777777665 367999999999999999963 2 3 48
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCC-CCccCCCCCCCCeEec
Q 021028 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGL-SKMSKSAPSDQSRINL 297 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~-~KMSKS~p~~~s~I~L 297 (318)
+||||.||++|++++||+|+|+| ++.|..+.+ ++||+| ||. +|||||.+ +++|+|
T Consensus 223 lvp~G~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---~~l~gL-dG~~~KMSKS~~--nsaI~L 278 (393)
T 3hv0_A 223 LVPHAIDQDPYFRMVRDVAPRLG------------------YLKPSSIHS---IFLPSL-QGSQTKMSASVQ--NSSIFV 278 (393)
T ss_dssp EEEEEGGGHHHHHHHHHHTGGGT------------------CCCCEEEEE---CCCCC----------------CCCCBT
T ss_pred ecccccchHHHHHHHHHHHHHcC------------------CCCceeecc---CcccCC-CCCCcCCCCCCC--CCeEec
Confidence 99999999999999999999998 345766654 789999 554 79999997 479999
Q ss_pred cCCHHHHHHhhcc-ccCCCC
Q 021028 298 LDPKDVIANKIKR-CKTDSS 316 (318)
Q Consensus 298 ~D~pe~I~~KI~~-A~Td~~ 316 (318)
+|+|++|++|||+ |+||+.
T Consensus 279 ~D~p~~i~kKI~k~A~td~~ 298 (393)
T 3hv0_A 279 NDNEESIRNKIMKYAFSGGQ 298 (393)
T ss_dssp TCCHHHHHHHHHHHSCCCSC
T ss_pred cCCHHHHHHHHHhhccCCCC
Confidence 9999999999999 999964
No 29
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=5.8e-50 Score=392.83 Aligned_cols=205 Identities=20% Similarity=0.311 Sum_probs=161.4
Q ss_pred CCceEEEeeCCCC-ccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 021028 77 VKKRIVSGVQPTG-SIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 77 ~~~~i~tGi~PTG-~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek 151 (318)
+++++|+||+||| .+|||||++++ .+| ||+ ++.++|+|+|+|+++. +.+++++++++++++++|+|+|+||+|
T Consensus 77 ~~~~vy~G~~PTg~~lHLGh~v~~~~~~~--lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k 154 (395)
T 3i05_A 77 QPFYLYTGRGPSSESMHMGHLIPFMFTKW--LQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPEL 154 (395)
T ss_dssp CCEEEEEEECCCSSCCBGGGSHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTS
T ss_pred CCeEEEEeecCCCccchHHHHHHHHHHHH--HHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 5889999999999 69999999984 556 887 5778899999987765 678999999999999999999999999
Q ss_pred eEEEEcCCchhhhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhh--------hhhccc----cc
Q 021028 152 ASVFVQSHVRAHVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMAS--------DILLYQ----SD 218 (318)
Q Consensus 152 ~~i~~qS~~~~~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaa--------Dil~~~----ad 218 (318)
+.||.||+|.. .+| ..+.+|.|+.+|+++.++.+ .+++++|+|+||+|||| ||++++ +|
T Consensus 155 t~i~~ns~~~~---~~~-----~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~ 226 (395)
T 3i05_A 155 TFIFRDFDYMG---CMY-----RTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFC 226 (395)
T ss_dssp EEEEEHHHHTT---TSH-----HHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEE
T ss_pred eEEEEcCHHHH---HHH-----HHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCce
Confidence 99999999875 112 33557888888888887765 36799999999999999 666788 99
Q ss_pred EEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CCCccCCCCCCCCeEec
Q 021028 219 FVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQSRINL 297 (318)
Q Consensus 219 ivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg-~~KMSKS~p~~~s~I~L 297 (318)
+||||.||++|++++||+|+|+|. +.|..+.+ ++||+| || ++||||| + +|+|+|
T Consensus 227 lvp~G~DQ~~~i~l~Rdla~r~~~------------------~~p~~l~~---~~l~gL-dG~~~KMSKS-~--~~~I~L 281 (395)
T 3i05_A 227 LIPQAIDQDPYFRLTRDIAPRLGY------------------LKPAVIHS---KFFPGL-SGPKGKMSSS-S--GTAVLL 281 (395)
T ss_dssp EEEEEGGGHHHHHHHHHTHHHHTC------------------CCCEEEEE---CCCCCC-----------------CCBT
T ss_pred EEEeccchHHHHHHHHHHHHHcCC------------------CCceeecc---ccccCC-CCCcccCCCC-C--CCcccC
Confidence 999999999999999999999983 34666554 789999 55 4799999 4 699999
Q ss_pred cCCHHHHHHhhcc-ccCCCC
Q 021028 298 LDPKDVIANKIKR-CKTDSS 316 (318)
Q Consensus 298 ~D~pe~I~~KI~~-A~Td~~ 316 (318)
+|+|++|++|||+ |+||+.
T Consensus 282 ~D~p~~i~kKI~k~A~td~~ 301 (395)
T 3i05_A 282 TDTEKMVKDKINKHAFSGGG 301 (395)
T ss_dssp TCCHHHHHHHHC--------
T ss_pred CCCHHHHHHHHHhhccCCCc
Confidence 9999999999999 999874
No 30
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=1.8e-49 Score=393.37 Aligned_cols=209 Identities=20% Similarity=0.236 Sum_probs=172.1
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~---------~d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ | .+++++++|+.++.+++.
T Consensus 36 ~~~~vy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgD~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~ql~- 113 (432)
T 1h3f_A 36 RPLTVKLGADPTRPDLHLGHAVV-LRKMRQFQELGHKVVLIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAG- 113 (432)
T ss_dssp SCCEEEEEECTTCCSCBHHHHHH-HHHHHHHHHTTCEEEEEECCCC---------------------HHHHHHHHHHHT-
T ss_pred CCcEEEEcccCCCCCCchhhHHH-HHHHHHHHHCCCCEEEEEccceEEecCCCCcccccccCCHHHHHHHHHHHHHHHH-
Confidence 57899999999996 99999996 679999998 8999999999999997 3 236788888877777654
Q ss_pred cCCC--CCceEEEEcCCchhhhHHHHHH--hccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEE
Q 021028 145 CGID--NSKASVFVQSHVRAHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFV 220 (318)
Q Consensus 145 ~GiD--pek~~i~~qS~~~~~~el~w~L--~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adiv 220 (318)
+|+| |+|++||+||+|..+..+.|++ .+.++++++.+..+|+.+... .+++++|+|+||+||||||+++++|+|
T Consensus 114 ~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~--~~~is~~ef~YPlLQaaDil~l~~~l~ 191 (432)
T 1h3f_A 114 KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEA--GIPISLHELLYPFAQAYDSVAIRADVE 191 (432)
T ss_dssp TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHT--TCCCBGGGGTHHHHHHHHHHHHTCSEE
T ss_pred HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhc--CCCCCccccchhhHHhhhhhhcCccEE
Confidence 7899 9999999999998776666665 789999998888799876543 367899999999999999999999999
Q ss_pred EecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCC
Q 021028 221 PVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDP 300 (318)
Q Consensus 221 pvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~ 300 (318)
|||.||++|++++||+++|+|.. .|..+.. ++||++ ||++|||||.+ |+|+|+|+
T Consensus 192 ~gG~DQ~~ni~l~rdlarr~~~~------------------~~~~lt~---pll~gl-dG~~KMSKS~~---n~I~L~ds 246 (432)
T 1h3f_A 192 MGGTDQRFNLLVGREVQRAYGQS------------------PQVCFLM---PLLVGL-DGREKMSKSLD---NYIGLTEP 246 (432)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTCC------------------CCEEEEE---CCCBCT-TSSSBCCGGGT---CCCBTTSC
T ss_pred EechHHHHHHHHHHHHHHHhCCC------------------CceEeec---ccccCC-CCccccCcCCC---CeeCCCCC
Confidence 99999999999999999998732 1333333 689999 88779999984 69999999
Q ss_pred HHHHHHhhccccCC
Q 021028 301 KDVIANKIKRCKTD 314 (318)
Q Consensus 301 pe~I~~KI~~A~Td 314 (318)
|++|++||+++.+|
T Consensus 247 p~~i~~Ki~~~~d~ 260 (432)
T 1h3f_A 247 PEAMFKKLMRVPDP 260 (432)
T ss_dssp HHHHHHHHHTSCGG
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999998765
No 31
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=9.8e-50 Score=399.50 Aligned_cols=204 Identities=22% Similarity=0.340 Sum_probs=177.4
Q ss_pred CCceEEEeeCCC-CccchhhHHHHH-HHHHHHhc--cCcEEEEEeccceecC-CCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 021028 77 VKKRIVSGVQPT-GSIHLGNYLGAI-KNWIALQN--SYETLFFIVDLHAITL-PYDTQQLSKATRETAAIYLACGIDNSK 151 (318)
Q Consensus 77 ~~~~i~tGi~PT-G~lHLGhyvg~l-~~~~~LQ~--g~~v~ilIaD~hA~t~-~~d~~~i~~~~~~~~~~llA~GiDpek 151 (318)
+++++|+||+|| |.+|||||++++ .+| ||+ |++++|+|||+|++++ ..+++++++++++++++|+|+|+||+|
T Consensus 154 ~~~~vy~G~dPTag~LHLGh~v~~~~~~~--lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k 231 (477)
T 1r6t_A 154 KPFYLYTGRGPSSEAMHVGHLIPFIFTKW--LQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINK 231 (477)
T ss_dssp CCEEEEEEECCCTTCCBGGGHHHHHHHHH--HHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTS
T ss_pred CCcEEEEcccCCCCCccHHHHHHHHHHHH--HHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 478999999999 899999999987 566 885 8999999999999997 368899999999999999999999999
Q ss_pred eEEEEcCCchh----hhHHHHHHhccCCHHHHhchhhhHHHhhhhC-CCCcccccchhhHHHhhhhhc-----------c
Q 021028 152 ASVFVQSHVRA----HVELMWLLSSATPIGWLNKMIQFKEKSHKAG-GENVGVALLTYPVLMASDILL-----------Y 215 (318)
Q Consensus 152 ~~i~~qS~~~~----~~el~w~L~~~~tv~~L~r~~~fk~~~~~~~-~~~~~~g~l~YPlLQaaDil~-----------~ 215 (318)
+.||.||+|.. +.++.| +|+|+.+++++.++++ .+++++|+|+||+||||||++ +
T Consensus 232 ~~i~~nsd~~~~l~~~~~~~~---------~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~ 302 (477)
T 1r6t_A 232 TFIFSDLDYMGMSSGFYKNVV---------KIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTD 302 (477)
T ss_dssp EEEEEHHHHGGGCTTHHHHHH---------HHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCC
T ss_pred eEEEechhhhcccHHHHHHHH---------HHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccC
Confidence 99999999975 445544 5557777777666554 357899999999999999999 5
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCC-CCCccCCCCCCCCe
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDG-LSKMSKSAPSDQSR 294 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg-~~KMSKS~p~~~s~ 294 (318)
++|+||||.||++|++++||||+|+| ++.|..+.. ++||+| || ++|||||.+ +++
T Consensus 303 ~~~~VpvG~DQ~~~i~l~Rdla~r~~------------------~~~p~~l~~---pll~gL-dG~~~KMSKS~~--nsa 358 (477)
T 1r6t_A 303 IQCLIPCAIDQDPYFRMTRDVAPRIG------------------YPKPALLHS---TFFPAL-QGAQTKMSASDP--NSS 358 (477)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHGGGGT------------------CCCCEEEEE---CCCEET-TEEEEECCTTST--TCC
T ss_pred CceeEeccccHHHHHHHHHHHHHHhC------------------CCCceeeec---ccccCC-CCCccccCCCCC--CCc
Confidence 78999999999999999999999998 245776654 789999 55 479999996 369
Q ss_pred EeccCCHHHHHHhhcc-ccCCC
Q 021028 295 INLLDPKDVIANKIKR-CKTDS 315 (318)
Q Consensus 295 I~L~D~pe~I~~KI~~-A~Td~ 315 (318)
|+|+|+|++|++||++ |+||+
T Consensus 359 I~L~d~p~~i~kKi~~yA~t~~ 380 (477)
T 1r6t_A 359 IFLTDTAKQIKTKVNKHAFSGG 380 (477)
T ss_dssp CBTTCCHHHHHHHHHHHSCCCS
T ss_pred eeecCCHHHHHHHhccccccCC
Confidence 9999999999999999 99997
No 32
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.8e-49 Score=385.00 Aligned_cols=205 Identities=20% Similarity=0.171 Sum_probs=165.9
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +||||+++ +.+|++||+ |++++|+|||+||+|+ +. +++++++|+++++++|+|
T Consensus 45 ~~~~vy~G~~PTg~sLHLGhl~~-l~~~~~lQ~~G~~~~~lIaD~hal~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a 123 (356)
T 2pid_A 45 FPQTIYCGFDPTADSLHVGHLLA-LLGLFHLQRAGHNVIALVGGATARLGDPSGRTKEREALETERVRANARALRLGLEA 123 (356)
T ss_dssp -CCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCcccHHHHHH-HHHHHHHHHCCCcEEEEEccceeeecCCcccccccccCCHHHHHHHHHHHHHHHHH
Confidence 35899999999997 99999765 679999998 7999999999999997 32 689999999999999999
Q ss_pred cCCCCCc-----------eEEEEcCCchhhhHHHHHHh---ccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhh
Q 021028 145 CGIDNSK-----------ASVFVQSHVRAHVELMWLLS---SATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMAS 210 (318)
Q Consensus 145 ~GiDpek-----------~~i~~qS~~~~~~el~w~L~---~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaa 210 (318)
+ +||++ ++|++||+|..+.++.|++. ..+++++|.+..+||++... .+++++|+|+||+||||
T Consensus 124 ~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~m~~~~~~k~r~~~--~~~is~g~f~YPvLQAa 200 (356)
T 2pid_A 124 L-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGTLLSRQSVQLRLKS--PEGMSLAEFFYQVLQAY 200 (356)
T ss_dssp H-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHHHHHCHHHHHHHTS--TTCCBHHHHHHHHHHHH
T ss_pred h-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHHHhcchHHHHhhcc--CCCCchHHHHHHHHHHH
Confidence 9 88855 99999999987766677654 48999999999998865432 25789999999999999
Q ss_pred hhhcc----cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccC
Q 021028 211 DILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (318)
Q Consensus 211 Dil~~----~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSK 286 (318)
||++| ++|+||||.||++|++++||||+|||.. .|..+.. ++||++ || +||||
T Consensus 201 Dil~l~~~~~~~i~p~G~DQ~~~i~l~rdla~r~n~~------------------~~~~l~~---pll~~l-dG-~KMSK 257 (356)
T 2pid_A 201 DFYYLFQRYGCRVQLGGSDQLGNIMSGYEFINKLTGE------------------DVFGITV---PLITST-TG-AKLGK 257 (356)
T ss_dssp HHHHHHHHHCCCEEEEEGGGHHHHHHHHHHHHHHSSC------------------CCEEEEE---CCCC-----------
T ss_pred HHHHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCC------------------Ccccccc---ccccCC-Cc-ccccC
Confidence 99999 9999999999999999999999999942 1322332 678898 88 79999
Q ss_pred CCCCCCCeEeccC---CHHHHHHhhccc
Q 021028 287 SAPSDQSRINLLD---PKDVIANKIKRC 311 (318)
Q Consensus 287 S~p~~~s~I~L~D---~pe~I~~KI~~A 311 (318)
|. +|+|+|+| +|++|++||+++
T Consensus 258 S~---~naI~L~d~~tsp~~i~~ki~~~ 282 (356)
T 2pid_A 258 SA---GNAVWLNRDKTSPFELYQFFVRQ 282 (356)
T ss_dssp -------CCBSSTTTSCHHHHHHHHHTC
T ss_pred CC---CCeeeccCCCCCHHHHHHHHHcC
Confidence 96 58999999 999999999996
No 33
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=7.4e-48 Score=380.74 Aligned_cols=203 Identities=16% Similarity=0.134 Sum_probs=180.9
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. +++++++|++++.+++.+
T Consensus 31 ~~~~iy~G~dPTg~sLHlGh~v~-l~~~~~lQ~~G~~~~~lIgd~ta~igdp~gk~~~R~~l~~e~i~~n~~~~~~~~~~ 109 (420)
T 1jil_A 31 EQVTLYCGADPTADSLHIGHLLP-FLTLRRFQEHGHRPIVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHN 109 (420)
T ss_dssp SCCEEEEEECCSSSSCBHHHHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999 99999996 679999998 8999999999999998 43 889999999999999999
Q ss_pred cCCCC---CceEEEEcCCch-hhhHHHHHH--hccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc---
Q 021028 145 CGIDN---SKASVFVQSHVR-AHVELMWLL--SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (318)
Q Consensus 145 ~GiDp---ek~~i~~qS~~~-~~~el~w~L--~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~--- 215 (318)
+ ||| +|+.||.||+|. ++.++.|+. ++++++++|.++.+|+.+. + +++++|+|+||+||||||+++
T Consensus 110 ~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~---~-~~is~~ef~YplLQaaD~l~l~~~ 184 (420)
T 1jil_A 110 I-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRL---E-HGISYTEFTYTILQAIDFGHLNRE 184 (420)
T ss_dssp H-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHH---T-TTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred H-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhc---c-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 8 888 999999999997 568999975 7899999999999997644 2 678999999999999999999
Q ss_pred -cccEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 216 -~adivpvG~DQ~~hi~l~Rdia~k~-n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
++|+||||.||++|++++||+|+|+ |.. .|..+.. ++||++ || +|||||. +|
T Consensus 185 ~~~~i~~gG~DQ~~ni~~grdla~r~~~~~------------------~~~~l~~---pll~~l-dG-~KMSKS~---~n 238 (420)
T 1jil_A 185 LNCKIQVGGSDQWGNITSGIELMRRMYGQT------------------DAYGLTI---PLVTKS-DG-KKFGKSE---SG 238 (420)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHCCC------------------CCEEEEE---CCCBCT-TS-CBTTBCS---SS
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------CeeEeec---ccccCC-cc-ccccCCC---CC
Confidence 9999999999999999999999999 731 1333333 678999 88 7999998 47
Q ss_pred eEeccC---CHHHHHHhhccc
Q 021028 294 RINLLD---PKDVIANKIKRC 311 (318)
Q Consensus 294 ~I~L~D---~pe~I~~KI~~A 311 (318)
+|+|+| +|+++++||+++
T Consensus 239 aI~L~d~~tsp~~i~~ki~~~ 259 (420)
T 1jil_A 239 AVWLDAEKTSPYEFYQFWINQ 259 (420)
T ss_dssp BCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999986
No 34
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=1.8e-48 Score=384.84 Aligned_cols=204 Identities=15% Similarity=0.163 Sum_probs=172.7
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-CC---------CHHHHHHHHHHH---HHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-PY---------DTQQLSKATRET---AAI 141 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~~---------d~~~i~~~~~~~---~~~ 141 (318)
+++++|+||+|||. +|||||++ +.+|++||+ ||+++++|||+||+++ |. +++++++|++++ ++.
T Consensus 29 ~~~~iy~G~dPTg~sLHlGh~v~-l~~l~~lQ~~G~~~i~lIgd~ta~igdpsgk~~~R~~l~~e~i~~n~~~~~~q~~~ 107 (419)
T 2ts1_A 29 ERVTLYCGFDPTADSLHIGHLAT-ILTMRRFQQAGHRPIALVGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGR 107 (419)
T ss_dssp SCCEEEEEECCSSSSCBGGGHHH-HHHHHHHHHTTCEEEEEECTTGGGTCCCTTCSSCCCCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeeCCCCCCccHHHHHH-HHHHHHHHHCCCcEEEEEcCceeEecCCCCccccccCCCHHHHHHHHHHHHHHHHH
Confidence 47899999999999 99999996 679999998 8999999999999998 43 889999999877 445
Q ss_pred HHHcCCCCCceEEEEcCCchhhhHHHHHH---hccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcc---
Q 021028 142 YLACGIDNSKASVFVQSHVRAHVELMWLL---SSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLY--- 215 (318)
Q Consensus 142 llA~GiDpek~~i~~qS~~~~~~el~w~L---~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~--- 215 (318)
|+++|+||+|+.||.||+|..+..+.|+| +.+++++++.+...|+ ++.+ +++++|+|+||+||||||+++
T Consensus 108 ~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k---~r~~-~~is~~ef~YPlLQaaDil~l~~~ 183 (419)
T 2ts1_A 108 FLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQ---SRIE-TGISFTEFSYMMLQAYDFLRLYET 183 (419)
T ss_dssp SSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHH---TTTT-TCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhh---hccC-CCcchHHHHHHHHHHHHHHHHhcc
Confidence 66889999999999999998765555544 4678888777766654 3333 678999999999999999999
Q ss_pred -cccEEEecCcchHHHHHHHHHHHHh-hhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 216 -QSDFVPVGEDQKQHLELTRELAERV-NYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 216 -~adivpvG~DQ~~hi~l~Rdia~k~-n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
++|+||||.||++|++++||||+|+ |.. .|..+.. ++||++ || +|||||. +|
T Consensus 184 ~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~------------------~~~~lt~---pll~~l-dG-~KMSKS~---~n 237 (419)
T 2ts1_A 184 EGCRLQIGGSDQWGNITAGLELIRKTKGEA------------------RAFGLTI---PLVTKA-DG-TKFGKTE---SG 237 (419)
T ss_dssp HCEEEEEEEGGGHHHHHHHHHHHHHHHC--------------------CCEEEEE---CCCCCT-TS-CCTTCCS---SC
T ss_pred CCCcEEeccHHHHHHHHHHHHHHHHhcCCC------------------Ceeeccc---ccccCC-Cc-ccccCCC---CC
Confidence 9999999999999999999999999 742 1323333 678898 88 7999997 57
Q ss_pred eEeccC---CHHHHHHhhccc
Q 021028 294 RINLLD---PKDVIANKIKRC 311 (318)
Q Consensus 294 ~I~L~D---~pe~I~~KI~~A 311 (318)
+|+|+| +|+++++||+++
T Consensus 238 aI~L~d~~tsp~~i~qki~~~ 258 (419)
T 2ts1_A 238 TIWLDKEKTSPYEFYQFWINT 258 (419)
T ss_dssp CCBSSTTTSCHHHHHHHHHTC
T ss_pred eEecCCCCCCHHHHHHHHhcC
Confidence 999999 999999999985
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.5e-47 Score=372.99 Aligned_cols=221 Identities=18% Similarity=0.145 Sum_probs=179.2
Q ss_pred CCceEEEeeCCCCc-cchhhHHHHHHHHHHHhc-cCcEEEEEeccceecC-C---------CCHHHHHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGS-IHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITL-P---------YDTQQLSKATRETAAIYLA 144 (318)
Q Consensus 77 ~~~~i~tGi~PTG~-lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~-~---------~d~~~i~~~~~~~~~~llA 144 (318)
+++++|+||+|||. +|||||++ +.+|++||+ |++++++|||+||+++ | .+++++++|++++.+++++
T Consensus 63 ~~~~vy~G~dPTg~sLHlGhlv~-l~~l~~lQ~~G~~~~~lIgD~haligdpsgk~~~R~~~~~e~i~~n~~~i~~~~~a 141 (392)
T 1y42_X 63 RRIGAYVGIDPTAPSLHVGHLLP-LMPLFWMYLEGYKAFTLIGGSTAKIGDPTGRLKSRDHLSSSDATMNMTKIHYQLKK 141 (392)
T ss_dssp CCCEEEEEECCCSSSCBGGGHHH-HHHHHHHHHHTCEEEEEECTTTTTTCCCCC-----------CHHHHHHHHHHHHHH
T ss_pred CCCEEEEeecCCCCCccHHHHHH-HHHHHHHHHcCCcEEEEEcCceeEeCCCCCcchhhccCCHHHHHHHHHHHHHHHHH
Confidence 46899999999999 99999996 579999998 8999999999999998 4 2678889999999888888
Q ss_pred cC-----------CC---CCceEEEEcCCc-hhhhHHHHH--HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHH
Q 021028 145 CG-----------ID---NSKASVFVQSHV-RAHVELMWL--LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVL 207 (318)
Q Consensus 145 ~G-----------iD---pek~~i~~qS~~-~~~~el~w~--L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlL 207 (318)
+| +| |+++.||.||+| .++..+.|+ ++++++++++.+..+||.+... .+++++|+|+||+|
T Consensus 142 ~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~~~~~k~r~~~--~~~is~gef~YPlL 219 (392)
T 1y42_X 142 LWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLSRDTVKNKMTQ--GDGVSFAEFTYPIM 219 (392)
T ss_dssp HHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHSSHHHHHTTSS--SSCCCHHHHHHHHH
T ss_pred HhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhhhhHHHHHhcC--CCCcccHHHHHHHH
Confidence 65 45 689999999997 567788888 8889999987766677653321 35789999999999
Q ss_pred Hhhhhhcc----cccEEEecCcchHHHHHHHHHHHHhhhhhCC--c---cccccCCCCCccccCCccccCCCCcccccCC
Q 021028 208 MASDILLY----QSDFVPVGEDQKQHLELTRELAERVNYLYGG--R---KWKKLGGRGGAIFKVPEPLIPPAGARVMSLT 278 (318)
Q Consensus 208 QaaDil~~----~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~--~---~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~ 278 (318)
|||||+++ ++|+||||.||++|++++||||+|||+.|+. + ..+++| +..|..+.. ++||++
T Consensus 220 QAaDil~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~~~~p~l~------~~~~~~l~~---pll~~l- 289 (392)
T 1y42_X 220 QGWDWFELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERKYVTPKTA------LDECVGFTV---PLLTDS- 289 (392)
T ss_dssp HHHHHHHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHSCCSG------GGSCEEEEC---CCCBCT-
T ss_pred HHHHHHHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhccccccccccccccc------cCCcccccc---ccCcCC-
Confidence 99999987 6999999999999999999999999987621 0 001111 123444433 789999
Q ss_pred CCCCCccCCCCCCCCeEeccC---CHHHHHHhhccccCCC
Q 021028 279 DGLSKMSKSAPSDQSRINLLD---PKDVIANKIKRCKTDS 315 (318)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L~D---~pe~I~~KI~~A~Td~ 315 (318)
|| +|||||. +|+|+|+| +|+++++||+++ +|+
T Consensus 290 dG-~KMSKS~---~naI~L~d~~tsp~~i~qki~~~-~D~ 324 (392)
T 1y42_X 290 SG-AKFGKSA---GNAIWLDPYQTSVFDFYGYFVRR-SDQ 324 (392)
T ss_dssp TC-CBTTBCS---SSBCBSSTTTSCHHHHHHHHHTC-CTT
T ss_pred ch-hhccCCC---CCeeeccCCCCCHHHHHHHHHcC-Cch
Confidence 88 7999997 58999999 999999999986 454
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=8.1e-40 Score=339.94 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=168.0
Q ss_pred CCCCCceEEEeeCCCCccchhhHHHHHHHHHHHh-c--cCcEEEEEeccceecC-C--CCHHHHHHHHHHHHHHHHHcCC
Q 021028 74 SSSVKKRIVSGVQPTGSIHLGNYLGAIKNWIALQ-N--SYETLFFIVDLHAITL-P--YDTQQLSKATRETAAIYLACGI 147 (318)
Q Consensus 74 ~~~~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ-~--g~~v~ilIaD~hA~t~-~--~d~~~i~~~~~~~~~~llA~Gi 147 (318)
....+..++|+- |||.+||||++++++.+.++| . |++++|+||||||+++ + .+++++++++.|++++|+|+|+
T Consensus 378 ~~~~~l~~~~~p-s~g~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~ 456 (690)
T 3p0j_A 378 APAKPHACMWMP-ALLKVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGL 456 (690)
T ss_dssp CCSSCEEEEECC-CCSSCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCcceEEecC-CCCCcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 333567788887 999999999999765477664 4 7899999999999998 3 5899999999999999999999
Q ss_pred CCCceEEEEcCCchhh-hHHHHH----HhccCCHHHHhchhhhHHHhhhhCCCCcccccchhhHHHhhhhhcccccEEEe
Q 021028 148 DNSKASVFVQSHVRAH-VELMWL----LSSATPIGWLNKMIQFKEKSHKAGGENVGVALLTYPVLMASDILLYQSDFVPV 222 (318)
Q Consensus 148 Dpek~~i~~qS~~~~~-~el~w~----L~~~~tv~~L~r~~~fk~~~~~~~~~~~~~g~l~YPlLQaaDil~~~adivpv 222 (318)
|+ |++|++||+|... .+++|. ++..+|++|+.+.. +.+++++|+|+||+||+|||+.+++|++||
T Consensus 457 d~-k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~---------~~~~~~i~~~~YPlmQaaDi~~l~aDi~~g 526 (690)
T 3p0j_A 457 PS-SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELY---------GGEVRNAGQVIAALMRVATALMLSVSHVIS 526 (690)
T ss_dssp CT-TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHT---------TSCCSSHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred Cc-CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHh---------CCCCcchHHHHHHHHHHhhhhccCCCEEec
Confidence 97 7999999998753 256775 56788888776542 236789999999999999999999999999
Q ss_pred cCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCeEeccCCHH
Q 021028 223 GEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLDPKD 302 (318)
Q Consensus 223 G~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D~pe 302 (318)
|.||++|++|+||+|+|+++ |..++. .++|+|.++.++|||+.+ +|+|+|+|+|+
T Consensus 527 G~DQ~~~~~LaRd~~~~~~~--------------------~~~~~~---~~~P~L~gp~~~~~~~s~--~~~I~l~D~~~ 581 (690)
T 3p0j_A 527 TSLDGHINAFAREYTKERID--------------------CVQTLE---GRIPALHRPGAAPAVLGA--DDVLYLDDNDM 581 (690)
T ss_dssp CSTTTTTTHHHHHHTTTCSE--------------------EEECCC---CSSCCSSCCCC---------CCSCBTTCCHH
T ss_pred ccccHHHHHHHHHHHHhccC--------------------cccccc---cccccCCCcccccCCCCC--CCeeeccCCHH
Confidence 99999999999999998541 433443 679999656556667765 69999999999
Q ss_pred HHHHhhccccCCC
Q 021028 303 VIANKIKRCKTDS 315 (318)
Q Consensus 303 ~I~~KI~~A~Td~ 315 (318)
+|++|||+|+|++
T Consensus 582 ~i~~KI~kA~c~p 594 (690)
T 3p0j_A 582 DIRRKIKKAYSAP 594 (690)
T ss_dssp HHHHHHHHSCCCT
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999987
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=99.39 E-value=1.6e-13 Score=129.93 Aligned_cols=186 Identities=17% Similarity=0.208 Sum_probs=108.4
Q ss_pred eCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 021028 85 VQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (318)
Q Consensus 85 i~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~ 162 (318)
=.|||.+||||+..++.+|+..+. +.++++.|.|. |. ....++.+.+.+++.++||++++. +++||+..+
T Consensus 12 PsPtG~LHiG~~rtal~n~l~Ar~~~g~~ilRieDt-------D~~R~~~~~~~~I~~dL~~LGl~~D~~-~~~qSer~~ 83 (298)
T 1nzj_A 12 PSPSGELHFGSLIAALGSYLQARARQGRWLVRIEDI-------DPPREVPGAAETILRQLEHYGLHWDGD-VLWQSQRHD 83 (298)
T ss_dssp CCTTSCCCHHHHHHHHHHHHHHHHTTCEEEEEECCS-------CGGGSCTTHHHHHHHHHHHTTCCCSSC-CEEGGGCHH
T ss_pred cCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEecC-------CchhhHHHHHHHHHHHHHHcCCCCCCC-CeeeeCCHH
Confidence 356799999999999999988876 67788899996 32 344567888999999999999974 899999643
Q ss_pred h-hHHHH-H------HhccCCHHHHhchhh-hHHHhhh---hC---------------CCCcccccchhhH-HHhhhhhc
Q 021028 163 H-VELMW-L------LSSATPIGWLNKMIQ-FKEKSHK---AG---------------GENVGVALLTYPV-LMASDILL 214 (318)
Q Consensus 163 ~-~el~w-~------L~~~~tv~~L~r~~~-fk~~~~~---~~---------------~~~~~~g~l~YPl-LQaaDil~ 214 (318)
. .+..- + +.|.+|..+|++... |...-+. .+ .++.-.|.+.++. .+.-|+++
T Consensus 84 ~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D~VL 163 (298)
T 1nzj_A 84 AYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLAREDFII 163 (298)
T ss_dssp HHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSCCEE
T ss_pred HHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCCEEE
Confidence 2 11111 1 558999999876310 1000000 00 0011123333333 34445555
Q ss_pred c-------------------cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccc
Q 021028 215 Y-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVM 275 (318)
Q Consensus 215 ~-------------------~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp 275 (318)
+ +.++|+=|.|+..+...-..+.+-++ ++.|...+. ++|.
T Consensus 164 ~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG------------------~~~p~~~H~---pll~ 222 (298)
T 1nzj_A 164 HRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFG------------------WKVPDYIHL---PLAL 222 (298)
T ss_dssp ECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHT------------------CCCCEEEEE---CBCC
T ss_pred ECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcC------------------CCCCeEEEe---eeeE
Confidence 4 45666669999988877777777766 234665554 4566
Q ss_pred cCCCCCCCccCCCCCCCCeEeccCCHHH
Q 021028 276 SLTDGLSKMSKSAPSDQSRINLLDPKDV 303 (318)
Q Consensus 276 ~L~dg~~KMSKS~p~~~s~I~L~D~pe~ 303 (318)
+. +| +||||+..+ ..|.-.++...
T Consensus 223 ~~-~g-~KLSKR~g~--~~v~~~~~~~~ 246 (298)
T 1nzj_A 223 NP-QG-AKLSKQNHA--PALPKGDPRPV 246 (298)
T ss_dssp C-----------------CCCSSCCHHH
T ss_pred CC-CC-CcccccCCc--cChhcCCccHH
Confidence 76 66 799999842 33444454443
No 38
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=99.31 E-value=1.3e-12 Score=131.50 Aligned_cols=179 Identities=18% Similarity=0.193 Sum_probs=119.8
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCce-------EEEE
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKA-------SVFV 156 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~-------~i~~ 156 (318)
.|||.+||||+..++.+|...+. +.++++.|.|. |+ ....+..+.+.+++.++||++|+. .+|+
T Consensus 14 sPTG~LHiG~~rtAL~n~l~Ar~~gG~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDegp~~gG~~~~~~ 86 (498)
T 2ja2_A 14 SPTGTPHVGLVRTALFNWAYARHTGGTFVFRIEDT-------DAQRDSEESYLALLDALRWLGLDWDEGPEVGGPYGPYR 86 (498)
T ss_dssp CSSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHHTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CCcccChHHHHHHHHHHHHcCCCcCCCcCcCCCCCCee
Confidence 67799999999999999988876 67777889998 43 345677888999999999999974 5899
Q ss_pred cCCchhhhHHHH--H------HhccCCHHHHhchh---------hhHH---------Hhhh--hCCC----------Ccc
Q 021028 157 QSHVRAHVELMW--L------LSSATPIGWLNKMI---------QFKE---------KSHK--AGGE----------NVG 198 (318)
Q Consensus 157 qS~~~~~~el~w--~------L~~~~tv~~L~r~~---------~fk~---------~~~~--~~~~----------~~~ 198 (318)
||+..+....+. + +.|+||-.+|+++. .|.. ..+. .|.. .+.
T Consensus 87 QS~r~~~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~~~~~ 166 (498)
T 2ja2_A 87 QSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPDDDLA 166 (498)
T ss_dssp GGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCSSCEE
T ss_pred eecCHHHHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCCCceE
Confidence 999754221111 1 55899999886542 1111 0000 0100 000
Q ss_pred -----cccchhhHHHhhhhhcc-------------------cccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCC
Q 021028 199 -----VALLTYPVLMASDILLY-------------------QSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGG 254 (318)
Q Consensus 199 -----~g~l~YPlLQaaDil~~-------------------~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~ 254 (318)
.|.+.++.-+.-|++.+ +.+.|.-|.|+..+....+.+.+.++. +|. |
T Consensus 167 ~~D~v~G~i~~~~~~~~D~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~-~g~------g- 238 (498)
T 2ja2_A 167 WNDLVRGPVTFAAGSVPDFALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR-IGV------A- 238 (498)
T ss_dssp EEETTTEEEEECTTCSCCCBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH-TTS------C-
T ss_pred EEecccceEeecccccCcceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh-hcC------C-
Confidence 13344444444455543 567777799999999999999999965 421 0
Q ss_pred CCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 255 RGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 255 ~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
++.|+..+. +++.+. +| +||||++.
T Consensus 239 -----~~~P~~~h~---plil~~-~g-~KLSKR~g 263 (498)
T 2ja2_A 239 -----ERIPKFAHL---PTVLGE-GT-KKLSKRDP 263 (498)
T ss_dssp -----CCCCEEEEE---CCEECS-SS-SBCCTTSG
T ss_pred -----CCCCeEEEe---eeeECC-CC-CcccccCC
Confidence 345766655 456776 66 79999984
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.30 E-value=1.6e-12 Score=130.08 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=117.6
Q ss_pred CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE-------EEE
Q 021028 86 QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-------VFV 156 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~-------i~~ 156 (318)
.|||.+||||+..++.+|...+. +.++++.|.|. |+ ....+..+.+.+++.++||+++... .|+
T Consensus 9 sPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp~~ 81 (468)
T 1j09_A 9 SPTGDPHVGTAYIALFNYAWARRNGGRFIVRIEDT-------DRARYVPGAEERILAALKWLGLSYDEGPDVGGPHGPYR 81 (468)
T ss_dssp CCSSSCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCTTHHHHHHHHHHHTTCCCSBBTTTBCTTCCCB
T ss_pred CCCCCccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCcccChHHHHHHHHHHHHcCCCCCCCCCCCCCCCCee
Confidence 57799999999999999988865 77888999998 33 3345677888999999999999742 499
Q ss_pred cCCchh-hhHHHH-H------HhccCCHHHHhchh-------------hhHHHhhhh--CC----------C-Ccc----
Q 021028 157 QSHVRA-HVELMW-L------LSSATPIGWLNKMI-------------QFKEKSHKA--GG----------E-NVG---- 198 (318)
Q Consensus 157 qS~~~~-~~el~w-~------L~~~~tv~~L~r~~-------------~fk~~~~~~--~~----------~-~~~---- 198 (318)
||+..+ +.+..- + +.|+||-.+|.++. +..+..+.. |. + .+.
T Consensus 82 QS~r~~~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~~D~ 161 (468)
T 1j09_A 82 QSERLPLYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEVKDE 161 (468)
T ss_dssp GGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEEEET
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 999643 211111 1 55899998886532 111111111 10 0 011
Q ss_pred -cccchhhHHHhhhhhccc-------------------ccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCc
Q 021028 199 -VALLTYPVLMASDILLYQ-------------------SDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGA 258 (318)
Q Consensus 199 -~g~l~YPlLQaaDil~~~-------------------adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~ 258 (318)
-|.+.+|..+.-|++.++ .+.|.-|.|+..|...-..+.+.++.
T Consensus 162 ~~G~~~~~~~~~~D~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~---------------- 225 (468)
T 1j09_A 162 LRGVVVYDNQEIPDVVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGW---------------- 225 (468)
T ss_dssp TTEEEEEEGGGSCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTC----------------
T ss_pred cceeEeecccCCCCeEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCC----------------
Confidence 234556655556666654 55666699999999999999998862
Q ss_pred cccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 259 IFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 259 ~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
..|+..+. +++.+. +| +||||++.
T Consensus 226 --~~p~~~h~---~li~~~-~g-~klSKR~g 249 (468)
T 1j09_A 226 --EAPRFYHM---PLLRNP-DK-TKISKRKS 249 (468)
T ss_dssp --CCCEEEEE---CCCBCT-TS-CBCCTTTS
T ss_pred --CCCeEEEe---eeeeCC-CC-Cccccccc
Confidence 34655443 446666 66 79999984
No 40
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=99.25 E-value=1.2e-12 Score=131.47 Aligned_cols=198 Identities=17% Similarity=0.192 Sum_probs=126.4
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE---
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS--- 153 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~--- 153 (318)
.+.=..=.|||.+||||+..++.+|...+. +.++++.|.|. |+ ....+..+.+.+++.++||++|...
T Consensus 26 v~~RFAPsPtG~LHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~I~~dL~wlGl~wDe~~~~g 98 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT-------DTERSSREYEQQILESLRWCGLDWDEGPDIG 98 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHHTCEEEECBCCC-------CTTTCCHHHHHHHHHHHHHTTCCCSBBTTTB
T ss_pred ceEEECCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEEeeC-------CcccccHHHHHHHHHHHHHcCCCCCcCCCCC
Confidence 344445567899999999999999988876 77899999998 33 3456678888999999999999742
Q ss_pred ----EEEcCCchh-hhHHHH-H------HhccCCHHHHhch--hhhHHH--hhhhCC--------C--Ccc-----cccc
Q 021028 154 ----VFVQSHVRA-HVELMW-L------LSSATPIGWLNKM--IQFKEK--SHKAGG--------E--NVG-----VALL 202 (318)
Q Consensus 154 ----i~~qS~~~~-~~el~w-~------L~~~~tv~~L~r~--~~fk~~--~~~~~~--------~--~~~-----~g~l 202 (318)
.|+||+..+ +.+..- + +.|+||-.+|++. ..|... ....|. . .+. .|.+
T Consensus 99 G~~gp~~QSer~~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v~G~~ 178 (488)
T 3afh_A 99 GDFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYM 178 (488)
T ss_dssp CTTCCCBGGGCHHHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEE
T ss_pred CCCCCeeeeCCHHHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEeccceeE
Confidence 689999653 211111 1 4478887777652 011100 000010 0 000 1222
Q ss_pred h----------------hhHHHhhhhh---cccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC
Q 021028 203 T----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP 263 (318)
Q Consensus 203 ~----------------YPlLQaaDil---~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P 263 (318)
. ||..+-|.++ ..+.+.|.-|.|+..+...-..+.+.++ ++.|
T Consensus 179 ~~~~~~~~D~Vl~R~DG~PtY~lA~vVDD~~mgIThViRG~D~l~~tp~q~~l~~aLG------------------~~~P 240 (488)
T 3afh_A 179 EFDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAP 240 (488)
T ss_dssp EEEGGGSCCEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT------------------CCCC
T ss_pred eecCCCCCCeEEEecCCCeehhhHHHHHHHhcCCCEEEEchhhhhCHHHHHHHHHHcC------------------CCCC
Confidence 2 3333333222 3578888889999999999999999887 3347
Q ss_pred ccccCCCCcccccCCCCCCCccCCCCCCCCeEeccC------CHHHHHHhhcc
Q 021028 264 EPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (318)
Q Consensus 264 ~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~~ 310 (318)
+..+. ++|.+. +| +||||++. .+.|.+ .|+.|.+-+..
T Consensus 241 ~f~H~---pli~~~-~g-~KLSKR~g----~~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 241 VFMHI---PLILGS-DR-TPLSKRHG----ATSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp EEEEE---CCEECT-TS-SBCCTTTS----CCBHHHHHHHTCCHHHHHHHHHH
T ss_pred eEEEE---eeeeCC-CC-CcccCcCC----cccHHHHHHCCCCHHHHHHHHHH
Confidence 66655 457776 77 79999984 233432 46666554443
No 41
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=99.13 E-value=6e-10 Score=112.02 Aligned_cols=176 Identities=17% Similarity=0.185 Sum_probs=116.8
Q ss_pred eeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCCchh
Q 021028 84 GVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKASVFVQSHVRA 162 (318)
Q Consensus 84 Gi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~~~~ 162 (318)
.=.|||.+||||+..++.+|+..+. +.++++.|.|.-. .....++++.+.+++.++||+++. .+++||+..+
T Consensus 7 APSPtG~lHiG~artal~n~l~Ar~~~G~filRieDtD~------~R~~~~~~~~i~~dL~wLGl~wde-~~~~QS~r~~ 79 (492)
T 2cfo_A 7 APSPTGNLHIGTARTAVFNWLYARHRGGKFILRIEDTDR------ERSRPEYTENILEGLQWLGLTWDE-GPYFQSDRLD 79 (492)
T ss_dssp CCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCCSS------SSCCHHHHHHHHHHHHHTTCCCSE-EEEEGGGCHH
T ss_pred CCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEEeeCCc------cccchHHHHHHHHHHHHcCCCCCC-CCccccCCHH
Confidence 3467799999999999999987765 7789999999821 133466788889999999999996 4899998643
Q ss_pred -hhHHHHH-------HhccCCHHHHhchh----------hhHH---------Hhh--hhCC---------C---------
Q 021028 163 -HVELMWL-------LSSATPIGWLNKMI----------QFKE---------KSH--KAGG---------E--------- 195 (318)
Q Consensus 163 -~~el~w~-------L~~~~tv~~L~r~~----------~fk~---------~~~--~~~~---------~--------- 195 (318)
+.+..-. +.|++|-.+|..+. .|.. ..+ ..|. .
T Consensus 80 ~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~~D~ 159 (492)
T 2cfo_A 80 LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEWQDL 159 (492)
T ss_dssp HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEEEET
T ss_pred HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEEEec
Confidence 2221111 44888888775421 0110 000 0010 0
Q ss_pred --------Cccc---------------ccchhhHHHhhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCcccccc
Q 021028 196 --------NVGV---------------ALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (318)
Q Consensus 196 --------~~~~---------------g~l~YPlLQaaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~ 252 (318)
...+ |..+|=+==+.|....+.|+|+-|.|+..+-..-..|.+.++
T Consensus 160 v~G~~~~~~~~~~~D~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg----------- 228 (492)
T 2cfo_A 160 VRGRVSWQGADLGGDMVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG----------- 228 (492)
T ss_dssp TTEEEEEEGGGGCSSEEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT-----------
T ss_pred ceeeeeecccccCCCeEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC-----------
Confidence 0011 333333333445555677899999999999988888888876
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 253 ~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
++.|...+. ++|.+. +| +||||++.
T Consensus 229 -------~~~P~~~H~---plil~~-~g-~KLSKr~g 253 (492)
T 2cfo_A 229 -------ATPPNFAHT---PLILNS-TG-QKLSKRDG 253 (492)
T ss_dssp -------CCCCEEEEE---CCEECS-SS-SBCCTTSS
T ss_pred -------CCCceEEEe---eeEECC-CC-CEecccCC
Confidence 234765555 457776 77 79999984
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.12 E-value=6.1e-12 Score=129.00 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=123.0
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCceE----
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKAS---- 153 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~~---- 153 (318)
.++=..=.|||.+||||+.+++.+|...+. +.++++.|.|. ++ .....+....+.+++.++||+++...
T Consensus 130 v~~RFaPsPTG~LHiG~artAl~n~l~Ar~~~G~~ilRieDt----D~--~r~~~~~~~~I~~dL~wlGl~~D~~~~~gG 203 (592)
T 3al0_C 130 VRVRFAPSPTGHLHVGGARTALFNWMFARKEGGKFILRIEDT----DT--ERSSREYEQQILESLRWCGLDWDEGPDIGG 203 (592)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCC----CS--SSCCHHHHHHHHHHHHHTTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHHHHHhcCCcEEEEecCc----Ch--hhccHHHHHHHHHHHHHcCCCCCCCCCcCC
Confidence 444455678899999999999999987765 77899999995 21 13455677788999999999999742
Q ss_pred ---EEEcCCchhh-hHHHH-H------HhccCCHHHHhch--hhhHHH--hhhhC---------C-CCc-----ccccch
Q 021028 154 ---VFVQSHVRAH-VELMW-L------LSSATPIGWLNKM--IQFKEK--SHKAG---------G-ENV-----GVALLT 203 (318)
Q Consensus 154 ---i~~qS~~~~~-~el~w-~------L~~~~tv~~L~r~--~~fk~~--~~~~~---------~-~~~-----~~g~l~ 203 (318)
.|+||+..+. .+..- + +.|+||-.+|++. ..|... ....| . ..+ -.|.+.
T Consensus 204 ~~gp~~qSer~~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v~G~~~ 283 (592)
T 3al0_C 204 DFGPYRQSERLEIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYME 283 (592)
T ss_dssp TTCCCBSTTCHHHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTTTCSEE
T ss_pred CCCCeeeeCCHHHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecccceee
Confidence 6899996532 11111 1 4477776666542 001000 00000 0 000 012222
Q ss_pred ----------------hhHHHhhhhh---cccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCc
Q 021028 204 ----------------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPE 264 (318)
Q Consensus 204 ----------------YPlLQaaDil---~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~ 264 (318)
||..+-|+++ ..+.++|.-|.|+..|...-+.+.+.++ ++.|+
T Consensus 284 ~~~~~~~D~Vl~R~dg~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg------------------~~~P~ 345 (592)
T 3al0_C 284 FDNSTLEDFIIMKSNGFPTYNFAVVVDDHLMRISHVFRGEDHLSNTPKQLMIYEAFG------------------WEAPV 345 (592)
T ss_dssp CCSSSSCCEEEECTTSCCCHHHHHHHHHHHTTCSBCCEEGGGGGGHHHHHHHHTTTT------------------CCCCB
T ss_pred eccccCCCeEEEcCCCCeehhhHHHHHHHhcCCCeEEEchhhHhCHHHHHHHHHHhC------------------CCCCe
Confidence 3443333332 2467778889999999998888888876 23465
Q ss_pred cccCCCCcccccCCCCCCCccCCCCCCCCeEeccC------CHHHHHHhhcc
Q 021028 265 PLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLLD------PKDVIANKIKR 310 (318)
Q Consensus 265 ~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~D------~pe~I~~KI~~ 310 (318)
..+. ++|.+. +| +||||++.+ +.|.+ .|+.|..-+..
T Consensus 346 ~~hl---pli~~~-~g-~KLSKR~g~----~~l~~~~~~G~~peal~~~l~~ 388 (592)
T 3al0_C 346 FMHI---PLILGS-DR-TPLSKRHGA----TSVEHFRREGILSRALMNYLAL 388 (592)
T ss_dssp CCEE---CCCBCT-TS-SBCCTTTCS----SBHHHHHHTTCCHHHHHHHHTT
T ss_pred EEEe---eeeeCC-CC-CcccccCCc----ccHHHHHHCCCCHHHHHHHHHH
Confidence 5444 456776 67 799999842 33332 46666655543
No 43
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=98.75 E-value=1.9e-08 Score=100.79 Aligned_cols=182 Identities=17% Similarity=0.120 Sum_probs=112.1
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCHHHHHHHHHHHHHHHHHcCCCCCce-----
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDTQQLSKATRETAAIYLACGIDNSKA----- 152 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~~~i~~~~~~~~~~llA~GiDpek~----- 152 (318)
.+....=.|||.+||||+.+++.+|...+. +.++++.|.|... ...+.+..+.+.+++.++|++++..
T Consensus 14 v~~RfaPsPTG~LHiG~aRtAl~n~~~Ar~~~G~~iLRieDtD~------~r~~~~~~~~I~~~l~wlGl~~de~p~~gg 87 (481)
T 2o5r_A 14 VRVRFAPSPTGFLHVGGARTALFNFLFARKEKGKFILRIEDTDL------ERSEREYEEKLMESLRWLGLLWDEGPDVGG 87 (481)
T ss_dssp CEEEECCCCCSCCBHHHHHHHHHHHHHHHHHTCEEEECBCCSSC------CSGGGHHHHHHHHHHHHHTCCCSBBTTTBC
T ss_pred EEEEECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEEecCCc------cccHHHHHHHHHHHHHHcCCCCCCCcccCC
Confidence 355667789999999999999999876654 6778888887721 1234556777888899999999853
Q ss_pred --EEEEcCCchh-hhHHHHH-------HhccCCHHHHhchh----------hhH----HHh-------h--hhCC-----
Q 021028 153 --SVFVQSHVRA-HVELMWL-------LSSATPIGWLNKMI----------QFK----EKS-------H--KAGG----- 194 (318)
Q Consensus 153 --~i~~qS~~~~-~~el~w~-------L~~~~tv~~L~r~~----------~fk----~~~-------~--~~~~----- 194 (318)
-.|+||+..+ +.+..-. +.|+++-.+|.... .|. ++. + ..|.
T Consensus 88 ~~g~y~QS~r~~~y~~~a~~L~~~G~aY~c~ct~eel~~~r~~~~~~g~~~~yd~~~s~r~l~~~e~~~~~~~G~~~~iR 167 (481)
T 2o5r_A 88 DHGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMREKLLSEGKAPHYSQEMFEKFDTPERRREYEEKGLRPAVF 167 (481)
T ss_dssp TTCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHHHHHHTTCCCCBCGGGGTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCceeeeccHHHHHHHHHHHHHCCCeeEecCCHHHHHHHHHHHHhcCCCCCCCCchhhhcCCHHHHHHHHhcCCcceEE
Confidence 2578998432 2111111 33666655443221 010 100 0 0010
Q ss_pred ---C-----------------Ccccccch------hhHHHhhhhh---cccccEEEecCcchHHHHHHHHHHHHhhhhhC
Q 021028 195 ---E-----------------NVGVALLT------YPVLMASDIL---LYQSDFVPVGEDQKQHLELTRELAERVNYLYG 245 (318)
Q Consensus 195 ---~-----------------~~~~g~l~------YPlLQaaDil---~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g 245 (318)
. ...++.++ ||..+-|+++ .++.+.|..|.||..|...-..+.+.++
T Consensus 168 ~k~~~~~~~~~D~~~G~~~~~~~~~~D~Vl~RsDG~ptY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~aLG---- 243 (481)
T 2o5r_A 168 FKMPRKDYVLNDVVKGEVVFKTGAIGDFVIMRSNGLPTYNFACVVDDMLMEITHVIRGDDHLSNTLRQLALYEAFE---- 243 (481)
T ss_dssp ECCCSSCEEEEETTTEEEEECTTSSCBEEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHHHHHHTT----
T ss_pred EEcCCCceEEEecccceeEeccccCCCeEEEccCCCcchhhHHHHHHHhCCCCeEEEChhHHHhHHHHHHHHHHcC----
Confidence 0 00111111 4444444443 3589999999999999998888888876
Q ss_pred CccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 246 GRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 246 ~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
+..|...+. +++.+. +| +||||+..
T Consensus 244 --------------~~~p~~~H~---plil~~-~G-~KLSKR~g 268 (481)
T 2o5r_A 244 --------------KAPPVFAHV---STILGP-DG-KKLSKRHG 268 (481)
T ss_dssp --------------CCCCEEEEE---CCEECT-TS-SBCCGGGS
T ss_pred --------------CCCCeEEEE---eeEECC-CC-CcccCcCC
Confidence 234654544 335555 66 79999984
No 44
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=98.74 E-value=7.5e-08 Score=96.69 Aligned_cols=181 Identities=20% Similarity=0.161 Sum_probs=108.2
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
+.+.=..=.|||.+||||+..++.+|+..+. +.++++.|.|. |. ....++.+.+.+++.++||+|+. ..|
T Consensus 25 ~v~~RFAPSPTG~lHiG~~rtal~n~l~Ar~~~G~filRieDt-------D~~R~~~~~~~~i~~dl~wlGl~~d~-~~~ 96 (490)
T 4g6z_A 25 PVRTRFAPSPTGFIHLGNIRSALYPWAFARKMKGTFVLRIEDT-------DVERSSQEAVDAILEGMAWLGLDYDE-GPY 96 (490)
T ss_dssp CCEEEECCCCCSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSE-EEE
T ss_pred CceEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEeCCC-------CcccccHHHHHHHHHHHHHcCCCCCC-CCc
Confidence 4454445567799999999999999987765 67888888886 33 34456788899999999999996 479
Q ss_pred EcCCchh-hhHHHHH-------HhccCCHHHHhchhhh----------HHHhhhh----------CC----------C-C
Q 021028 156 VQSHVRA-HVELMWL-------LSSATPIGWLNKMIQF----------KEKSHKA----------GG----------E-N 196 (318)
Q Consensus 156 ~qS~~~~-~~el~w~-------L~~~~tv~~L~r~~~f----------k~~~~~~----------~~----------~-~ 196 (318)
+||+..+ +.+..-. +.|+||-.+|+.+..- ...-+.. |. + .
T Consensus 97 ~qS~r~~~y~~~~~~Li~~G~aY~C~ct~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~g~~~~~R~k~~~~~~ 176 (490)
T 4g6z_A 97 YQMQRMDRYREVLAQMQEKGLVYPCYMSTEELDALRERQRAAGEKPRYDGTWRPEPGKVLPEPPAGVAPVLRFRNPLTGT 176 (490)
T ss_dssp EGGGCHHHHHHHHHHHHHTTSEEEECC-------------------CCCCTTCCCTTCCCCCCCTTCCCEEEECCCCSSE
T ss_pred ccccCHHHHHHHHHHHHHCCCEEeCCCCHHHHHHHHHHHHhcCCCCCCCcccccCChhhhhhhhcCCCceEEEecCCCCc
Confidence 9998532 2221111 4588998887643110 0000000 00 0 0
Q ss_pred cc-----cccch----------------hhHHHhh---hhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCcccccc
Q 021028 197 VG-----VALLT----------------YPVLMAS---DILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKL 252 (318)
Q Consensus 197 ~~-----~g~l~----------------YPlLQaa---Dil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~ 252 (318)
+. -|.+. ||..+-| |=..++.+.|.=|.|...+--.-..|.+-++
T Consensus 177 ~~~~D~i~G~~~~~~~~~~D~Vl~R~DG~ptY~lA~vVDD~~mgIThViRG~D~l~~tprq~~l~~aLG----------- 245 (490)
T 4g6z_A 177 VAWDDAVKGRVEISNEELDDLVVARPDGTPMYNFCVVVDDLDMGITHVIRGDDHVNNTPRQINILRALG----------- 245 (490)
T ss_dssp EEEEETTTEEEEEEGGGCCCCEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHTT-----------
T ss_pred EEEEEeeeeeeeeccccCCCeEEEeeCCCccchhHHHHHHHhcCCCEEEeccccccChHHHHHHHHHcC-----------
Confidence 00 01111 2222222 2233578999999999888776667777765
Q ss_pred CCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 253 GGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 253 ~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
+..|...+. ++|.+- +| +||||.+.
T Consensus 246 -------~~~P~f~Hl---pLi~~~-~g-~KLSKR~g 270 (490)
T 4g6z_A 246 -------GEVPVYAHL---PTVLNE-QG-EKMSKRHG 270 (490)
T ss_dssp -------CCCCEEEEE---CCEECT-TS-SBCCTTTT
T ss_pred -------CCCCeEEEe---cceeCC-CC-CcccCCCC
Confidence 345766665 346665 66 89999984
No 45
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=98.63 E-value=1e-07 Score=96.26 Aligned_cols=180 Identities=20% Similarity=0.184 Sum_probs=113.7
Q ss_pred eEEEee--CCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceE--
Q 021028 80 RIVSGV--QPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKAS-- 153 (318)
Q Consensus 80 ~i~tGi--~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~-- 153 (318)
.|-|=| .|||.+||||+..++.+|...+. |.++++.|.|. |+ ....+..+.+.+++.++||++|...
T Consensus 24 ~vrtRFAPsPtG~LHiG~artAl~n~~~Ar~~~G~fiLRieDt-------D~~R~~~~~~~~I~~~L~wlGl~wDe~p~~ 96 (512)
T 4gri_A 24 STRVRYAPSPTGLQHIGGIRTALFNYFFAKSCGGKFLLRIEDT-------DQSRYSPEAENDLYSSLKWLGISFDEGPVV 96 (512)
T ss_dssp CCEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEECBCCC-------CTTSCCHHHHHHHHHHHHHHTCCCSBBTTT
T ss_pred ceeEEeCcCCCCcccHHHHHHHHHHHHHHHHcCCEEEEEeCcC-------CCCcCCHHHHHHHHHHHHHcCCCCCcCCcc
Confidence 344445 56699999999999999987755 77888999998 43 2334567778889999999998643
Q ss_pred -----EEEcCCchhh-hHHHH-H------HhccCCHHHHhchhhh-------------------HHHhhh--hC------
Q 021028 154 -----VFVQSHVRAH-VELMW-L------LSSATPIGWLNKMIQF-------------------KEKSHK--AG------ 193 (318)
Q Consensus 154 -----i~~qS~~~~~-~el~w-~------L~~~~tv~~L~r~~~f-------------------k~~~~~--~~------ 193 (318)
.|+||+..+. .+..- + +.|+||-.++++...- .++... .+
T Consensus 97 ~g~~~py~QS~r~~~Y~~~~~~L~~~G~aY~C~ct~~el~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~R 176 (512)
T 4gri_A 97 GGDYAPYVQSQRSAIYKQYAKYLIESGHAYYCYCSPERLERIKKIQNINKMPPGYDRHCRNLSNEEVENALIKKIKPVVR 176 (512)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHTTCCCSCCCTTTTCCHHHHHHHHHTTCCCEEE
T ss_pred CCCCCCccccchHHHHHHHHHHHHHcCCccccccchHHHHHHHHhhhccCCCCccchhhcccchhhhhhhhhhhccceee
Confidence 4789985432 11111 1 4589998877643211 011000 00
Q ss_pred -----CCCcc-----cccch-----------------hhHHHhhhh---hcccccEEEecCcchHHHHHHHHHHHHhhhh
Q 021028 194 -----GENVG-----VALLT-----------------YPVLMASDI---LLYQSDFVPVGEDQKQHLELTRELAERVNYL 243 (318)
Q Consensus 194 -----~~~~~-----~g~l~-----------------YPlLQaaDi---l~~~adivpvG~DQ~~hi~l~Rdia~k~n~~ 243 (318)
..++. .|.+. ||..+=|-+ ...+.+.|.-|.|...+--.-.-|.+-++
T Consensus 177 ~k~~~~~~~~~~D~v~g~i~~~~~~~~~D~vi~r~dg~PtY~fA~vVDD~~mgITHViRG~D~l~sTp~q~~l~~alg-- 254 (512)
T 4gri_A 177 FKIPLEGDTSFDDILLGRITWANKDISPDPVILKSDGLPTYHLANVVDDYLMKITHVLRAQEWVSSGPLHVLLYKAFK-- 254 (512)
T ss_dssp ECCCSSCEEEEEETTTEEEEEEGGGSCSSCEEECTTSCBCHHHHHHHHHHHTTCSEEEEEGGGGGGHHHHHHHHHHHT--
T ss_pred ecccccCCceeeccccceEEecccccCCceEEEecCCcccccccceecccccCCceeccccccccccHHHHHHHHHcC--
Confidence 00000 11111 222222222 22579999999999999888888888876
Q ss_pred hCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCC
Q 021028 244 YGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAP 289 (318)
Q Consensus 244 ~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p 289 (318)
++.|...+. +.|.+- +| +|+||.+.
T Consensus 255 ----------------~~~P~y~H~---pli~~~-~g-~kLSKR~~ 279 (512)
T 4gri_A 255 ----------------WKPPIYCHL---PMVMGN-DG-QKLSKRHG 279 (512)
T ss_dssp ----------------CCCCEEEEE---CCCBCT-TS-SBCCTTTS
T ss_pred ----------------CCCCeEEec---chhccc-cc-cccCcccc
Confidence 456876666 446665 66 89999974
No 46
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=98.56 E-value=3.4e-07 Score=93.00 Aligned_cols=175 Identities=22% Similarity=0.218 Sum_probs=100.1
Q ss_pred EEEeeC--CCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 81 IVSGVQ--PTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 81 i~tGi~--PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
+.+=|. |||.+||||+..++.+|...+. +..+++.|.|. |+ ....++.+.+.+++.++|++++ ++++
T Consensus 97 v~tRFaPsPtG~LHIGhaRtal~n~l~Ar~~~G~~iLRieDt-------D~~R~~~e~~~~I~edL~wLGl~wd--~~~~ 167 (553)
T 3aii_A 97 VVLRFAPNPSGPLHIGHARAAILNHEYARKYDGRLILRIEDT-------DPRRVDPEAYDMIPADLEWLGVEWD--ETVI 167 (553)
T ss_dssp CEEEECCCSSSSCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCTTHHHHHHHHHHHHTCCCS--EEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCC--CCcc
Confidence 445554 5599999999999988876654 67888999998 43 3344577888999999999997 6899
Q ss_pred cCCchh-hhHHHH-H------HhccCCHHHHhchh-----------hhHHHhh-----hhCCC--------------Ccc
Q 021028 157 QSHVRA-HVELMW-L------LSSATPIGWLNKMI-----------QFKEKSH-----KAGGE--------------NVG 198 (318)
Q Consensus 157 qS~~~~-~~el~w-~------L~~~~tv~~L~r~~-----------~fk~~~~-----~~~~~--------------~~~ 198 (318)
||+..+ +.+..- + +.|+++-.++.... +..+..+ ..|.+ +.+
T Consensus 168 qSdr~~~y~~~~~~Li~~G~AY~c~cs~eei~~~r~~g~~~~cR~~s~ee~l~~f~~m~~G~~g~~~lR~k~d~~~~n~~ 247 (553)
T 3aii_A 168 QSDRMETYYEYTEKLIERGGAYVCTCRPEEFRELKNRGEACHCRSLGFRENLQRWREMFEMKEGSAVVRVKTDLNHPNPA 247 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHHHHHHTTCCCGGGGCCHHHHHHHHHHGGGSCTTSCEEEECCCTTCSSGG
T ss_pred cccCHHHHHHHHHHHHHcCCceeCCCCHHHHHHHhhcCCCCccccCCHHHHHHHHHHHhcCCcCceEEEEEcccccCCCC
Confidence 998643 222111 1 44778877664211 1110000 00100 001
Q ss_pred c----------------cc--chhhHHH---hhhhhcccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCC
Q 021028 199 V----------------AL--LTYPVLM---ASDILLYQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGG 257 (318)
Q Consensus 199 ~----------------g~--l~YPlLQ---aaDil~~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~ 257 (318)
+ |. ..||..+ +.|.-..+.|+++.|.|...|-..-.-+...++
T Consensus 248 ~~Dfvl~R~~~~~hp~~Gd~~~g~PtYhfa~~vDD~~~GIThviRG~D~~~nt~~Q~~l~~alG---------------- 311 (553)
T 3aii_A 248 IRDWVSMRIVEAEHPRTGTRYRVYPMMNFSVAVDDHLLGVTHVLRGKDHLANREKQEYLYRHLG---------------- 311 (553)
T ss_dssp GTTCEEEEECCSCBTTTBTSCCEEECHHHHHHHHHHHTTCCEEEC-----CHHHHHHHHHHHHT----------------
T ss_pred CCCcEEEEecCCCCCccCCCceeeeeeeeeeeeeeccCCCceEeccHhhhhCHHHHHHHHHHcC----------------
Confidence 0 11 1355444 445555789999999999988766666666665
Q ss_pred ccccCCccccCCCCcccccCCCCCCCccCCC
Q 021028 258 AIFKVPEPLIPPAGARVMSLTDGLSKMSKSA 288 (318)
Q Consensus 258 ~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~ 288 (318)
+..|...+. ++| .+ +| +|||||.
T Consensus 312 --~~~P~y~H~---~~L-~~-~g-~KLSKR~ 334 (553)
T 3aii_A 312 --WEPPEFIHY---GRL-KM-DD-VALSTSG 334 (553)
T ss_dssp --CCCCEEECC---CCB-C---------CHH
T ss_pred --CCCCeEEEe---eEE-ec-CC-ceechhh
Confidence 234665554 455 44 66 7999996
No 47
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.38 E-value=6.7e-07 Score=90.89 Aligned_cols=94 Identities=12% Similarity=-0.027 Sum_probs=68.2
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
.+.-.+=.|||.+||||+..++.+|...+. +.++++.|.|. |+ ....++.+.+.+++.++||+++. .+++
T Consensus 27 v~tRFaPSPtG~LHIGhaRtal~n~l~Ar~~gG~fiLRieDT-------D~~R~~~e~~~~I~edL~wLGl~wde-~~~~ 98 (553)
T 1qtq_A 27 VHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDT-------NPVKEDIEYVESIKNDVEWLGFHWSG-NVRY 98 (553)
T ss_dssp CEEEECCCTTSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CGGGCCHHHHHHHHHHHHHTTCCCSS-SCEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECCC-------CchhcCHHHHHHHHHHHHHcCCCCCC-CCee
Confidence 444455567799999999999988876654 67889999998 43 33456788889999999999964 4799
Q ss_pred cCCchh-hhHHHHH-------HhccCCHHHHh
Q 021028 157 QSHVRA-HVELMWL-------LSSATPIGWLN 180 (318)
Q Consensus 157 qS~~~~-~~el~w~-------L~~~~tv~~L~ 180 (318)
||+..+ +.+..-. +.|+++-.+|.
T Consensus 99 qSer~~~~~~~a~~Li~~G~AY~c~ct~eel~ 130 (553)
T 1qtq_A 99 SSDYFDQLHAYAIELINKGLAYVDELTPEQIR 130 (553)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECCCHHHHH
T ss_pred hcccHHHHHHHHHHHHHCCCceecCCCHHHHH
Confidence 998643 2222221 44788877664
No 48
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.24 E-value=7.9e-06 Score=86.61 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=68.2
Q ss_pred ceEEEeeCCCCccchhhHHHHHHHHHHHhc-cCcEEEEEeccceecCCCCH-HHHHHHHHHHHHHHHHcCCCCCceEEEE
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAIKNWIALQN-SYETLFFIVDLHAITLPYDT-QQLSKATRETAAIYLACGIDNSKASVFV 156 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~-g~~v~ilIaD~hA~t~~~d~-~~i~~~~~~~~~~llA~GiDpek~~i~~ 156 (318)
.+.=.+=.|||.+||||+..++.+|...+. +..+++.|.|. |+ ....++.+.+.+++.++||+++. .+++
T Consensus 67 v~tRFaPSPtG~LHIGhARtAL~n~l~Ar~~gG~fiLRIEDT-------D~~R~~~e~~~~IledL~wLGl~wde-~~~~ 138 (851)
T 2hz7_A 67 VVTRFPPDPSGYAHLGHVFASLLDFNTARQYGGQFNLRMDDT-------NPELARQEYVDSIADDLKWLGLDWGE-HFYY 138 (851)
T ss_dssp CEEEECCCSSSCCBHHHHHHHHHHHHHHHHTTCEEEEEECCC-------CTTTCCHHHHHHHHHHHHHHTCCCTT-CEEE
T ss_pred eEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCEEEEEECcC-------CcccccHHHHHHHHHHHHHcCCCCCC-Cccc
Confidence 344445667799999999999989877655 67889999998 33 34556788889999999999964 5899
Q ss_pred cCCchh-hhHHHH-H------HhccCCHHHHh
Q 021028 157 QSHVRA-HVELMW-L------LSSATPIGWLN 180 (318)
Q Consensus 157 qS~~~~-~~el~w-~------L~~~~tv~~L~ 180 (318)
||++.+ +.+..- + |.|+++-.+|.
T Consensus 139 qSer~d~y~e~a~~LI~~G~AY~c~ct~eel~ 170 (851)
T 2hz7_A 139 ASDYFDRYYAYAEQLIRQGDAYVESVSPEELS 170 (851)
T ss_dssp GGGGHHHHHHHHHHHHHTTSEEEECSCHHHHH
T ss_pred HhhhHHHHHHHHHHHHHCCCcEeecCCHHHHH
Confidence 999643 222111 1 44788877664
No 49
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=97.28 E-value=0.00017 Score=73.67 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=28.5
Q ss_pred ceEEEeeCCCCccchhhHHHHH--HHHHHHhc--cCcEEE--EEecc
Q 021028 79 KRIVSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETLF--FIVDL 119 (318)
Q Consensus 79 ~~i~tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~i--lIaD~ 119 (318)
..-|+|--|+|++||||..+.+ .-+.++.+ |++|+. -|.|+
T Consensus 106 ~ve~~spn~~~~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 106 LVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEEeeCCCCCCCCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3445677888999999998766 23445543 777754 57776
No 50
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=96.63 E-value=0.0068 Score=60.38 Aligned_cols=75 Identities=12% Similarity=0.017 Sum_probs=44.3
Q ss_pred CCceEE-EeeCCCCccchhhHHHHHH--HHHHHh--ccCcEEEEE-ecccee--cC-----CCCHHH-HHHHHHHHHHHH
Q 021028 77 VKKRIV-SGVQPTGSIHLGNYLGAIK--NWIALQ--NSYETLFFI-VDLHAI--TL-----PYDTQQ-LSKATRETAAIY 142 (318)
Q Consensus 77 ~~~~i~-tGi~PTG~lHLGhyvg~l~--~~~~LQ--~g~~v~ilI-aD~hA~--t~-----~~d~~~-i~~~~~~~~~~l 142 (318)
.++++| +|-=|.|.+||||....+. -+.++. .|++|.+.. -|.|.. +. ..++.+ .+++...+.+++
T Consensus 24 ~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d~ 103 (462)
T 3tqo_A 24 GKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDE 103 (462)
T ss_dssp TEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 344554 4666779999999887652 223332 278876532 333221 00 123433 345677888899
Q ss_pred HHcCCCCCc
Q 021028 143 LACGIDNSK 151 (318)
Q Consensus 143 lA~GiDpek 151 (318)
.++|+.++.
T Consensus 104 ~~LgI~~d~ 112 (462)
T 3tqo_A 104 KALRVLSPD 112 (462)
T ss_dssp HHHTCCCCS
T ss_pred HHcCCCCCc
Confidence 999998753
No 51
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=96.45 E-value=0.0027 Score=65.44 Aligned_cols=27 Identities=11% Similarity=0.121 Sum_probs=22.5
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhhh
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVNY 242 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n~ 242 (318)
+-.|-.+|.||..|+.....+++.++.
T Consensus 377 d~~IyV~g~~q~~~~~~l~~~l~~lG~ 403 (629)
T 2zue_A 377 NIVINVIGAEQKHPQLAIKYALQLLGF 403 (629)
T ss_dssp SEEEEEEEGGGHHHHHHHHHHHHHTTC
T ss_pred CcEEEEEeCcHhhHHHHHHHHHHHcCC
Confidence 445678899999999999999988874
No 52
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=95.63 E-value=0.012 Score=59.00 Aligned_cols=79 Identities=24% Similarity=0.338 Sum_probs=50.3
Q ss_pred CceEEEeeCCCCccchhhHHHHHHHHH---HHh-ccCcEE-EEEeccceecC--CC------------C-----------
Q 021028 78 KKRIVSGVQPTGSIHLGNYLGAIKNWI---ALQ-NSYETL-FFIVDLHAITL--PY------------D----------- 127 (318)
Q Consensus 78 ~~~i~tGi~PTG~lHLGhyvg~l~~~~---~LQ-~g~~v~-ilIaD~hA~t~--~~------------d----------- 127 (318)
..++.+|--|||.+||||...++..++ .+. .|+++. ++-.|.|-... |. +
T Consensus 21 ~yv~~tgPsPtG~lHIGhaR~al~~D~laR~l~~~g~~v~fi~~idD~d~~rkip~~~~~a~~~~~G~~~~~~p~p~~~~ 100 (523)
T 1irx_A 21 KYVVESGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKVPRNVPQEWKDYLGMPISEVPDPWGCH 100 (523)
T ss_dssp EEEEEEEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCCCCSSSCGGGGGGTTSBGGGSCCTTSSS
T ss_pred eEEECCCCCCCCCcccCCcHHHHHHHHHHHHHHHcCCCEEEEEeeCCcchhhhhhhHHHHHHHHHcCCCcccCCcchhhH
Confidence 356667999999999999998886532 122 266653 33344443111 00 0
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCceEEEEcCC
Q 021028 128 TQQLSKATRETAAIYLACGIDNSKASVFVQSH 159 (318)
Q Consensus 128 ~~~i~~~~~~~~~~llA~GiDpek~~i~~qS~ 159 (318)
.+-.+.+...+.+++.++||+++ +|.||+
T Consensus 101 ~~~~~~~~~~~~~~l~~Lgi~~D---~~~~se 129 (523)
T 1irx_A 101 ESYAEHFMRKFEEEVEKLGIEVD---LLYASE 129 (523)
T ss_dssp SSHHHHHHHHHHHHHHTTTCCCE---EEEHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCce---EEechh
Confidence 11234577788889999999987 348988
No 53
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=95.19 E-value=0.048 Score=54.40 Aligned_cols=75 Identities=5% Similarity=-0.048 Sum_probs=49.2
Q ss_pred CCceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEeccc---eecC-----CCCH-HHHHHHHHHHHHHH
Q 021028 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIVDLH---AITL-----PYDT-QQLSKATRETAAIY 142 (318)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIaD~h---A~t~-----~~d~-~~i~~~~~~~~~~l 142 (318)
+++.|-|.+ -++|.+||||+++.+. -+.+.++ |++|.++-+.+| ++.. ..++ +-++++...+.+++
T Consensus 9 k~f~Ittp~pY~nG~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~~~~~ 88 (542)
T 3u1f_A 9 KVFFVTSPIYYVNAAPHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEFKKCF 88 (542)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCchhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 345555553 6899999999887652 2333333 889877666554 2221 2245 34566778888999
Q ss_pred HHcCCCCCc
Q 021028 143 LACGIDNSK 151 (318)
Q Consensus 143 lA~GiDpek 151 (318)
.++|++.|.
T Consensus 89 ~~lgi~~D~ 97 (542)
T 3u1f_A 89 EQMDYSIDY 97 (542)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCccCc
Confidence 999998763
No 54
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=94.73 E-value=0.16 Score=51.12 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=48.8
Q ss_pred CceEEEe-eCCCCccchhhHHHHHHH--HHHHhc--cCcEEEEE-eccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 021028 78 KKRIVSG-VQPTGSIHLGNYLGAIKN--WIALQN--SYETLFFI-VDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~tG-i~PTG~lHLGhyvg~l~~--~~~LQ~--g~~v~ilI-aD~hA~t~-------~~d~~~-i~~~~~~~~~~ll 143 (318)
++.+.++ .-|||.+||||....+.. +.++++ |++|.+.. .|.|..-. ..++++ +++....+.+++.
T Consensus 19 ~~~v~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 98 (560)
T 3h99_A 19 KILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFA 98 (560)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEeCCCCCCCCCcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3444444 356699999999876632 333332 78886544 44443311 124433 4456678888999
Q ss_pred HcCCCCCceEEEEcCC
Q 021028 144 ACGIDNSKASVFVQSH 159 (318)
Q Consensus 144 A~GiDpek~~i~~qS~ 159 (318)
++|++++. ++.-++
T Consensus 99 ~lgi~~d~--~~~t~~ 112 (560)
T 3h99_A 99 GFNISYDN--YHSTHS 112 (560)
T ss_dssp HTTCCCSE--EEESSS
T ss_pred HcCCCCCC--ceeCCC
Confidence 99999883 454444
No 55
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=94.43 E-value=0.25 Score=49.33 Aligned_cols=79 Identities=18% Similarity=0.225 Sum_probs=48.5
Q ss_pred ceEEEee--CCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHHH-HHHHHHHHHHHHH
Q 021028 79 KRIVSGV--QPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQQ-LSKATRETAAIYL 143 (318)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~~~-i~~~~~~~~~~ll 143 (318)
....+|- -|||.+||||..+.+. -+.++++ |++|.+ .-.|.|..-. ..++++ .++....+.+++.
T Consensus 26 ~~~i~~p~pypng~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~l~ 105 (536)
T 4dlp_A 26 KYYITTAIAYPNGKPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRMAE 105 (536)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEeCCCCCCCCCcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444554 4569999999887663 2344433 788864 4445443311 124433 4456678888999
Q ss_pred HcCCCCCceEEEEcCC
Q 021028 144 ACGIDNSKASVFVQSH 159 (318)
Q Consensus 144 A~GiDpek~~i~~qS~ 159 (318)
++|++++ .++.-++
T Consensus 106 ~lgi~~d--~~~~t~~ 119 (536)
T 4dlp_A 106 VLNSSND--DYIRTSE 119 (536)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HcCCCCC--cceeCCC
Confidence 9999988 4555554
No 56
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=94.15 E-value=0.31 Score=49.24 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=50.3
Q ss_pred CCceEEEe-eCCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceecC-------CCCHH-HHHHHHHHHHHHH
Q 021028 77 VKKRIVSG-VQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAITL-------PYDTQ-QLSKATRETAAIY 142 (318)
Q Consensus 77 ~~~~i~tG-i~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t~-------~~d~~-~i~~~~~~~~~~l 142 (318)
++..|.+. .-|+|.+||||....+. -+.++++ |++|.+ .-.|.|..-. ..+++ -++++...+.+++
T Consensus 26 ~~~~i~~~~py~ng~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~~~~ 105 (564)
T 3kfl_A 26 KVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFKQCF 105 (564)
T ss_dssp CCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCCCCCcchhHHHHHHHHHHHHHHHcCCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444333 35889999999887652 3445543 888864 4445554311 12443 3455677888899
Q ss_pred HHcCCCCCceEEEEcCC
Q 021028 143 LACGIDNSKASVFVQSH 159 (318)
Q Consensus 143 lA~GiDpek~~i~~qS~ 159 (318)
..+||+.+. ++.-++
T Consensus 106 ~~lgi~~D~--~~~t~~ 120 (564)
T 3kfl_A 106 QEMNYDMNY--FIRTTN 120 (564)
T ss_dssp HHTTCCCSE--EEETTS
T ss_pred HHcCCCCCc--cccCCC
Confidence 999999883 455554
No 57
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=93.27 E-value=0.36 Score=47.57 Aligned_cols=79 Identities=14% Similarity=0.214 Sum_probs=48.7
Q ss_pred ceEEEee--CCCCccchhhHHHHHH--HHHHHh--ccCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 021028 79 KRIVSGV--QPTGSIHLGNYLGAIK--NWIALQ--NSYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL 143 (318)
Q Consensus 79 ~~i~tGi--~PTG~lHLGhyvg~l~--~~~~LQ--~g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~ll 143 (318)
..+.+|- -|||.+||||....+. -+.+++ .|++|..+.+ |.|..-. ..++ +-++++...+.+++.
T Consensus 6 ~~~i~~p~py~ng~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 6 KFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444454 4679999999887663 244444 3777765432 3332211 1234 334557778889999
Q ss_pred HcCCCCCceEEEEcCC
Q 021028 144 ACGIDNSKASVFVQSH 159 (318)
Q Consensus 144 A~GiDpek~~i~~qS~ 159 (318)
++|++++ .++..++
T Consensus 86 ~lgi~~d--~~~~t~~ 99 (497)
T 2csx_A 86 FLKIEYT--KFIRTTD 99 (497)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCccCCC
Confidence 9999988 3566776
No 58
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=93.10 E-value=0.49 Score=46.55 Aligned_cols=79 Identities=16% Similarity=0.171 Sum_probs=47.8
Q ss_pred ceEEEeeCC--CCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 021028 79 KRIVSGVQP--TGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (318)
Q Consensus 79 ~~i~tGi~P--TG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~~~~ll 143 (318)
..+.+|--| +|.+||||....+. -+.++++ |++|..+.+ |.|..-. ..++. -.+++...+.+++.
T Consensus 4 ~~~i~~p~py~~g~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 4 VFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred cEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 345555544 79999999987663 2344433 777765433 3222110 12343 33446667888999
Q ss_pred HcCCCCCceEEEEcCC
Q 021028 144 ACGIDNSKASVFVQSH 159 (318)
Q Consensus 144 A~GiDpek~~i~~qS~ 159 (318)
++|+++| .++..++
T Consensus 84 ~lgi~~d--~~~~t~~ 97 (500)
T 2d5b_A 84 LLGIAYD--DFIRTTE 97 (500)
T ss_dssp HTTCCCS--EEEETTS
T ss_pred HhCCcCC--CCcccCC
Confidence 9999988 4566676
No 59
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=93.04 E-value=0.37 Score=50.22 Aligned_cols=74 Identities=12% Similarity=0.228 Sum_probs=49.1
Q ss_pred CceEEEee-CCCCccchhhHHH-HH--HHHHHHhc--cCcEEEEEecc-ceecC-------CCCHHH-HHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLG-AI--KNWIALQN--SYETLFFIVDL-HAITL-------PYDTQQ-LSKATRETAAIY 142 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg-~l--~~~~~LQ~--g~~v~ilIaD~-hA~t~-------~~d~~~-i~~~~~~~~~~l 142 (318)
++.|.+++ -|+|.+||||.++ .+ .-+.++++ |++|.++.+.. |..-. ..++++ ..++...+.+++
T Consensus 3 ~~~itt~~Py~nG~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~~~ 82 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKITF 82 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CEEEecCCCCCCCchhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45666666 6789999999987 34 23555544 88887655544 43311 124533 455677888899
Q ss_pred HHcCCCCCc
Q 021028 143 LACGIDNSK 151 (318)
Q Consensus 143 lA~GiDpek 151 (318)
.++|++.|.
T Consensus 83 ~~lgis~D~ 91 (722)
T 1rqg_A 83 QRAKISFDF 91 (722)
T ss_dssp HHHTCCCSE
T ss_pred HHhCCCCCC
Confidence 999999884
No 60
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=91.41 E-value=0.097 Score=51.65 Aligned_cols=14 Identities=14% Similarity=0.377 Sum_probs=12.2
Q ss_pred ccccEEEecCcchH
Q 021028 215 YQSDFVPVGEDQKQ 228 (318)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (318)
+.+|+..+|.||..
T Consensus 250 ~p~di~~~G~D~~~ 263 (500)
T 2d5b_A 250 WPHAWHLIGKDILK 263 (500)
T ss_dssp GGGEEEEEEGGGHH
T ss_pred CCCeEEEEeechhh
Confidence 36799999999987
No 61
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=91.09 E-value=0.94 Score=44.91 Aligned_cols=72 Identities=14% Similarity=0.220 Sum_probs=44.5
Q ss_pred CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCHHH-HHHHHHHHHHHHHHcCCCCCce
Q 021028 86 QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDTQQ-LSKATRETAAIYLACGIDNSKA 152 (318)
Q Consensus 86 ~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~~~-i~~~~~~~~~~llA~GiDpek~ 152 (318)
-|+|.+||||....+. -+.++++ |++|.++.+ |.|..-. ..++.+ .+++...+.+++.++|++++
T Consensus 22 ~~ng~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~~lgi~~d-- 99 (524)
T 2x1l_A 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRLQEKLNISFD-- 99 (524)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHTTCCCS--
T ss_pred CCCCCcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC--
Confidence 4579999999887652 2444433 788765433 3222210 123433 34567788889999999887
Q ss_pred EEEEcCC
Q 021028 153 SVFVQSH 159 (318)
Q Consensus 153 ~i~~qS~ 159 (318)
.++..++
T Consensus 100 ~~~~t~~ 106 (524)
T 2x1l_A 100 RFIRTSD 106 (524)
T ss_dssp EEEETTS
T ss_pred CCeecCC
Confidence 4566666
No 62
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=90.53 E-value=0.099 Score=51.66 Aligned_cols=56 Identities=20% Similarity=0.259 Sum_probs=31.9
Q ss_pred cccEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCCe
Q 021028 216 QSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSR 294 (318)
Q Consensus 216 ~adivpvG~DQ~~-hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~ 294 (318)
.+|+..+|.||.. |..+--..+..++ . ..|..++.. .++.. +| +|||||. +|.
T Consensus 250 p~di~~~G~D~~~~H~~~~~a~l~~~g----~--------------~~~~~~~~~--G~v~~--~G-~KMSKS~---GN~ 303 (497)
T 2csx_A 250 PADLHLVGKDILRFHTVYWPAFLMSLG----Y--------------ELPKKVFAH--GWWTV--EG-KKMSKTL---GNV 303 (497)
T ss_dssp SCSCEEEEGGGHHHHHTHHHHHHHHHT----C--------------CCCSCEEEE--CCEES--SS-SBCCTTT---TCC
T ss_pred CceEEEeecchhHhHHHHHHHHHHHcC----C--------------CCCcEEEEC--cEEEe--CC-ceeCCcC---CCC
Confidence 7899999999987 4433212222222 1 124433321 22322 66 8999998 677
Q ss_pred Eec
Q 021028 295 INL 297 (318)
Q Consensus 295 I~L 297 (318)
|.+
T Consensus 304 i~~ 306 (497)
T 2csx_A 304 VDP 306 (497)
T ss_dssp CCH
T ss_pred CCH
Confidence 764
No 63
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=89.50 E-value=0.7 Score=45.57 Aligned_cols=82 Identities=12% Similarity=0.034 Sum_probs=47.0
Q ss_pred CCceEEEeeCCC--CccchhhHHHHHH--HHHHHhc--cCcEEEE--EeccceecC------CCCHHH-HHHHHHHHHHH
Q 021028 77 VKKRIVSGVQPT--GSIHLGNYLGAIK--NWIALQN--SYETLFF--IVDLHAITL------PYDTQQ-LSKATRETAAI 141 (318)
Q Consensus 77 ~~~~i~tGi~PT--G~lHLGhyvg~l~--~~~~LQ~--g~~v~il--IaD~hA~t~------~~d~~~-i~~~~~~~~~~ 141 (318)
.+.++|.. .|| |.+||||....+. -+.++.+ |++|.++ +.|+-.-+. ..++++ .+++...+.++
T Consensus 21 ~~v~~yv~-gPt~y~~~HiGHar~~v~~D~l~R~lr~~G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~ 99 (461)
T 1li5_A 21 GEVGMYVC-GITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKD 99 (461)
T ss_dssp TEEEEEEC-CCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEEc-CCcCCCCCcccccHHHHHHHHHHHHHHHcCCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34555554 666 9999999887662 2333332 7887654 344421110 123433 34466788889
Q ss_pred HHHcCCCCCceEEEEcCCc
Q 021028 142 YLACGIDNSKASVFVQSHV 160 (318)
Q Consensus 142 llA~GiDpek~~i~~qS~~ 160 (318)
+.++|+.+.. .+...|+.
T Consensus 100 ~~~LgI~~~d-~~~r~t~~ 117 (461)
T 1li5_A 100 FDALNILRPD-MEPRATHH 117 (461)
T ss_dssp HHHTTCCCCS-BCCBGGGC
T ss_pred HHHcCCCCCc-ccccccch
Confidence 9999998522 23445553
No 64
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=89.02 E-value=1.9 Score=41.66 Aligned_cols=81 Identities=14% Similarity=0.019 Sum_probs=47.9
Q ss_pred CceE-EEeeCCCCccchhhHHHHHH--HHHHHhc--cCcEEE-EEeccceec--C-----CCCHHH-HHHHHHHHHHHHH
Q 021028 78 KKRI-VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETLF-FIVDLHAIT--L-----PYDTQQ-LSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i-~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~i-lIaD~hA~t--~-----~~d~~~-i~~~~~~~~~~ll 143 (318)
++.+ ++|-=|.|.+||||....+. -+.++++ |++|.+ .-.|.|..- . ..++.+ .+++...+.+++.
T Consensus 39 ~v~~y~~gPt~yg~~HiGHar~~v~~DvlaR~lr~~G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~ 118 (414)
T 3c8z_A 39 TATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMA 118 (414)
T ss_dssp EEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEeCCCcCCCCcCccccHHHHHHHHHHHHHHHcCCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3444 34444559999999887652 2334433 788754 445555321 0 123433 3455677888999
Q ss_pred HcCCC-CCceEEEEcCCc
Q 021028 144 ACGID-NSKASVFVQSHV 160 (318)
Q Consensus 144 A~GiD-pek~~i~~qS~~ 160 (318)
++|+. ++ .++..+++
T Consensus 119 ~Lgi~~~d--~~~r~t~~ 134 (414)
T 3c8z_A 119 ALRVLPPH--DYVAATDA 134 (414)
T ss_dssp HTTCCCCS--EEEEGGGC
T ss_pred HcCCCCCc--ceecccch
Confidence 99998 66 34555553
No 65
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=88.81 E-value=0.18 Score=50.26 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=12.2
Q ss_pred cccEEEecCcchHHH
Q 021028 216 QSDFVPVGEDQKQHL 230 (318)
Q Consensus 216 ~adivpvG~DQ~~hi 230 (318)
-+|+.+.|.||..++
T Consensus 278 p~d~~~~G~D~~~fh 292 (542)
T 3u1f_A 278 PADVHVIGKDILKFH 292 (542)
T ss_dssp SCSEEEEEGGGHHHH
T ss_pred cceEEEecccccccc
Confidence 368999999997754
No 66
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=86.96 E-value=1.9 Score=46.11 Aligned_cols=73 Identities=15% Similarity=0.062 Sum_probs=46.4
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCHH-HHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDTQ-QLSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~~-~i~~~~~~~~~~ll 143 (318)
++.+++++ -|||.+||||.+..+. -+.++++ |++|....+ |.|.+-. ..++. -..++...+.+++.
T Consensus 54 ~~~v~~~~PypnG~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~~l~ 133 (880)
T 4arc_A 54 KYYCLSMLPYPSGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKNQLK 133 (880)
T ss_dssp EEEEEECCCCCCSSCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45677776 7789999999886552 2444433 788865444 4444321 12333 33456777888999
Q ss_pred HcCCCCC
Q 021028 144 ACGIDNS 150 (318)
Q Consensus 144 A~GiDpe 150 (318)
.+|+..|
T Consensus 134 ~LGis~D 140 (880)
T 4arc_A 134 MLGFGYD 140 (880)
T ss_dssp HTTCCCC
T ss_pred HhCCCcC
Confidence 9998665
No 67
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=86.39 E-value=0.21 Score=49.62 Aligned_cols=15 Identities=20% Similarity=0.452 Sum_probs=12.4
Q ss_pred ccccEEEecCcchHH
Q 021028 215 YQSDFVPVGEDQKQH 229 (318)
Q Consensus 215 ~~adivpvG~DQ~~h 229 (318)
+.+|+..+|.||...
T Consensus 264 ~p~di~~~G~D~~~f 278 (524)
T 2x1l_A 264 WPADLHMIGKDIIRF 278 (524)
T ss_dssp CSCSEEEEEGGGHHH
T ss_pred CCCeEEEEeechhHh
Confidence 358999999999853
No 68
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.15 E-value=0.23 Score=50.15 Aligned_cols=55 Identities=22% Similarity=0.311 Sum_probs=32.2
Q ss_pred ccccEEEecCcchHHHHH---HHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLEL---TRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSD 291 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l---~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~ 291 (318)
+.+|+.+.|.||..++.+ ++-.+ .+ ++.|..++.. .++ .. +| +|||||.
T Consensus 293 wp~dv~~~GkDii~FH~~~wpa~L~a--~g------------------~~~~~~v~~h--g~v-~~-~G-~KMSKS~--- 344 (564)
T 3kfl_A 293 WPADVHVVGKDILKFHAIYWPAFLMS--AE------------------LPLPERLVSH--GWW-TK-DH-KKISKSL--- 344 (564)
T ss_dssp CSCSEEEEEGGGHHHHHTHHHHHHHH--TT------------------CCCCSCEEEE--CCE-EE-TT-EECCTTT---
T ss_pred CccceEEEeecccchHHHHHHHHHHh--CC------------------CCCCcEEEEc--ccE-ee-CC-ccccccC---
Confidence 357899999999884322 22222 12 1234444431 334 33 66 7999998
Q ss_pred CCeEec
Q 021028 292 QSRINL 297 (318)
Q Consensus 292 ~s~I~L 297 (318)
+|.|.+
T Consensus 345 GNvV~p 350 (564)
T 3kfl_A 345 GNAFDP 350 (564)
T ss_dssp TCCCCH
T ss_pred CCCCCH
Confidence 677754
No 69
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=85.24 E-value=0.41 Score=50.32 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=33.8
Q ss_pred ccccEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~-hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+.+|+..+|.||.. |+...+-...-+ ++. .+.|..++.. .++. . +| +|||||. +|
T Consensus 602 ~p~Di~~~G~D~~~~H~~~~~~~~~~~---~~~-------------~~~pk~v~~~--G~v~-~-~G-~KMSKS~---GN 657 (810)
T 1wkb_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FRE-------------EHWPKGIAVN--GFGT-L-EG-QKMSKSK---GN 657 (810)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCG-------------GGSCCEEEEE--CCEE-E-TT-BCCCTTT---TC
T ss_pred CCceEEeecccccccHHHHHHHHHHHH---cCc-------------cccccEEEEE--eEEE-e-CC-eehhhcC---CC
Confidence 46899999999965 655542222211 111 1124444321 2332 2 66 8999998 67
Q ss_pred eEecc
Q 021028 294 RINLL 298 (318)
Q Consensus 294 ~I~L~ 298 (318)
.|.+.
T Consensus 658 vv~p~ 662 (810)
T 1wkb_A 658 VLNFI 662 (810)
T ss_dssp CCBHH
T ss_pred cCCHH
Confidence 77654
No 70
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=84.65 E-value=0.2 Score=49.77 Aligned_cols=40 Identities=25% Similarity=0.499 Sum_probs=27.2
Q ss_pred EEeeCCCCccchhhHHHHHH--HHHHHhc--cCcEE--EEEeccce
Q 021028 82 VSGVQPTGSIHLGNYLGAIK--NWIALQN--SYETL--FFIVDLHA 121 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~--ilIaD~hA 121 (318)
|+.--|||++|+||....+. .+.++.+ |++|. .-|+||=.
T Consensus 36 ~ss~n~~~~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G~ 81 (464)
T 3fnr_A 36 YVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAGN 81 (464)
T ss_dssp CCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCHH
T ss_pred eCCCCCCCCCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCccH
Confidence 34567899999999887652 3444433 77764 68888643
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=84.56 E-value=0.37 Score=46.76 Aligned_cols=29 Identities=21% Similarity=0.060 Sum_probs=19.0
Q ss_pred HhhhhhcccccEEEecCcchH-HHHHHHHH
Q 021028 208 MASDILLYQSDFVPVGEDQKQ-HLELTREL 236 (318)
Q Consensus 208 QaaDil~~~adivpvG~DQ~~-hi~l~Rdi 236 (318)
|+...+-...|+.++|.|+.. |++...-.
T Consensus 236 ~~~~~~g~~~di~~~G~D~~~~H~~~~~a~ 265 (414)
T 3c8z_A 236 IALTRIGTGLDIQGGGSDLIFPHHEYSAAH 265 (414)
T ss_dssp HHHHHTCSCEEEEEEEGGGTTTHHHHHHHH
T ss_pred HHHHhcCCCceEEEeccccccHHHHHHHHH
Confidence 344444346899999999877 66554333
No 72
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=84.25 E-value=2.3 Score=45.29 Aligned_cols=45 Identities=24% Similarity=0.317 Sum_probs=29.8
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.+++|. -|||.+||||.+..+. -+.++++ |++|.+..+ |-|.+
T Consensus 35 ~f~i~~ppPy~nG~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~~Gl 85 (862)
T 1gax_A 35 PFVIFMPPPNVTGSLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDHAGI 85 (862)
T ss_dssp EEEEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBCCTH
T ss_pred cEEEEcCCCCCCCCcchhhhHHHHHHHHHHHHHHhCCCccccccccCCCCc
Confidence 56777775 6789999999886542 2444443 788876555 44544
No 73
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=84.17 E-value=3.5 Score=41.28 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=44.2
Q ss_pred CceEEE-eeCCCCccchhhHHHHHH--HHHHHhc--cCcEEEEE--ecc---------c--eecC-----CCCHH-HHHH
Q 021028 78 KKRIVS-GVQPTGSIHLGNYLGAIK--NWIALQN--SYETLFFI--VDL---------H--AITL-----PYDTQ-QLSK 133 (318)
Q Consensus 78 ~~~i~t-Gi~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilI--aD~---------h--A~t~-----~~d~~-~i~~ 133 (318)
++++|+ |-=|.|.+||||....+. -+.++++ |++|.+.. .|. | .++. ..++. -.++
T Consensus 42 ~v~~YvcgPTvYg~~HIGHar~~v~~Dvl~R~lr~~Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~~ 121 (501)
T 3sp1_A 42 NVKVYACGPTVYNYAHIGNFRTYIFGDLLIKTLRFLGYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISEF 121 (501)
T ss_dssp CEEEEECCCBCSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEBCSCCC-------------------CCHHHHHHH
T ss_pred cceEEeCCCcCCCCcchhhhHHHHHHHHHHHHHHHcCCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHHH
Confidence 455554 433349999999887552 2333322 88987763 343 2 2222 12454 4456
Q ss_pred HHHHHHHHHHHcCCCCCc
Q 021028 134 ATRETAAIYLACGIDNSK 151 (318)
Q Consensus 134 ~~~~~~~~llA~GiDpek 151 (318)
++..+.+++.++|+.++.
T Consensus 122 ~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 122 FTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHcCCCCCC
Confidence 778889999999998764
No 74
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=82.97 E-value=0.46 Score=47.48 Aligned_cols=14 Identities=14% Similarity=0.273 Sum_probs=12.1
Q ss_pred cccEEEecCcchHH
Q 021028 216 QSDFVPVGEDQKQH 229 (318)
Q Consensus 216 ~adivpvG~DQ~~h 229 (318)
.+|+.+.|.||...
T Consensus 276 p~dv~~~G~D~~~f 289 (536)
T 4dlp_A 276 PANAHIIGKDISRF 289 (536)
T ss_dssp SCSEEEEEGGGHHH
T ss_pred CcceEEeechHHHH
Confidence 57899999999884
No 75
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=82.75 E-value=0.6 Score=50.25 Aligned_cols=60 Identities=23% Similarity=0.277 Sum_probs=33.5
Q ss_pred ccccEEEecCcchH-HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQ-HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~-hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+..+|.||.. |+...+-...-+ ++.. +.|..++.. .++.. +| +|||||. +|
T Consensus 602 ~P~Di~~~G~D~i~~H~~~~~~~~~a~---~~~~-------------~~pk~v~~~--G~v~~--~G-~KMSKS~---GN 657 (967)
T 1wz2_A 602 YPLDWRCSGKDLIPNHLTFFIFNHVAI---FREE-------------HWPKGIAVN--GFGTL--EG-QKMSKSK---GN 657 (967)
T ss_dssp CSCSEEEEEGGGTTTHHHHHHHHHHHH---SCST-------------TSCCCEEEE--CCEEE--SS-SCCCTTT---CC
T ss_pred CCCeEEeeeeCcchhHHHHHHHHHHHH---cCcc-------------cccceEEEe--eEEee--CC-EEccccc---cC
Confidence 46899999999964 555442222111 1210 124444431 23332 66 8999998 67
Q ss_pred eEecc
Q 021028 294 RINLL 298 (318)
Q Consensus 294 ~I~L~ 298 (318)
.|.+.
T Consensus 658 vv~p~ 662 (967)
T 1wz2_A 658 VLNFI 662 (967)
T ss_dssp CCBHH
T ss_pred CCCHH
Confidence 77653
No 76
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=82.70 E-value=0.7 Score=45.59 Aligned_cols=66 Identities=27% Similarity=0.237 Sum_probs=36.2
Q ss_pred HhhhhhcccccEEEecCcch-HHHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCCCCCCCccC
Q 021028 208 MASDILLYQSDFVPVGEDQK-QHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLTDGLSKMSK 286 (318)
Q Consensus 208 QaaDil~~~adivpvG~DQ~-~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~dg~~KMSK 286 (318)
|+...+--..|+..+|.|+. +|++ .++|+..-. +|. +.|..+++. .++. + +| +||||
T Consensus 212 m~~~~lg~~~dih~gG~Dl~fpH~~--~~~aq~~a~-~g~--------------~~~~~~~h~--g~v~-~-~G-~KMSK 269 (461)
T 1li5_A 212 MNCKQLGNHFDIHGGGSDLMFPHHE--NEIAQSTCA-HDG--------------QYVNYWMHS--GMVM-V-DR-EKMSK 269 (461)
T ss_dssp HHHHHHCSSEEEEECBGGGTTTHHH--HHHHHHHHH-SSS--------------CCEEEECCB--CCEE-E-TT-BCCCG
T ss_pred HHHHHhCCCceEEeccCccCchHHH--HHHHHHHHh-cCC--------------CCCcEEEEe--eEEE-E-CC-eEccc
Confidence 34444444679999999976 4543 344444321 121 123333331 2232 2 66 89999
Q ss_pred CCCCCCCeEecc
Q 021028 287 SAPSDQSRINLL 298 (318)
Q Consensus 287 S~p~~~s~I~L~ 298 (318)
|. +|.|.+.
T Consensus 270 S~---GN~v~~~ 278 (461)
T 1li5_A 270 SL---GNFFTVR 278 (461)
T ss_dssp GG---TCCCBHH
T ss_pred cC---CCccChh
Confidence 98 6777653
No 77
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=82.05 E-value=0.63 Score=49.89 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=16.4
Q ss_pred cccccEEEecCcchH---HHHHHHHHH
Q 021028 214 LYQSDFVPVGEDQKQ---HLELTRELA 237 (318)
Q Consensus 214 ~~~adivpvG~DQ~~---hi~l~Rdia 237 (318)
.+-+|+.+.|.||.. |-.+...++
T Consensus 546 ~~P~Dl~~~G~D~~r~wf~~~l~~s~~ 572 (917)
T 1ffy_A 546 SFPADMYLEGSDQYRGWFNSSITTSVA 572 (917)
T ss_dssp CSSBSEEEEEGGGGTTHHHHHHHHHHH
T ss_pred CCCceEEEEEecccccHHHHHHHHHHH
Confidence 356899999999973 444444444
No 78
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=81.27 E-value=0.66 Score=48.93 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=11.8
Q ss_pred ccccEEEecCcchH
Q 021028 215 YQSDFVPVGEDQKQ 228 (318)
Q Consensus 215 ~~adivpvG~DQ~~ 228 (318)
+-+|+...|.||..
T Consensus 543 ~P~dl~~~G~D~~r 556 (821)
T 1ile_A 543 FPADFIAEGIDQTR 556 (821)
T ss_dssp SSBSBEEEEGGGGG
T ss_pred CCcccccchhhhhc
Confidence 46899999999974
No 79
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=80.51 E-value=0.61 Score=46.84 Aligned_cols=15 Identities=47% Similarity=0.563 Sum_probs=11.7
Q ss_pred CCCCCccCCCCCCCCeEec
Q 021028 279 DGLSKMSKSAPSDQSRINL 297 (318)
Q Consensus 279 dg~~KMSKS~p~~~s~I~L 297 (318)
+| +|||||. +|.|.+
T Consensus 342 ~G-~KMSKS~---GNvv~p 356 (560)
T 3h99_A 342 NG-AKMSKSR---GTFIKA 356 (560)
T ss_dssp TT-EECCTTT---TCCCBH
T ss_pred CC-eeccccC---CCcCCH
Confidence 66 7999998 677754
No 80
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=79.57 E-value=2.8 Score=44.64 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=44.8
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-ccceecC-------CCCH-HHHHHHHHHHHHHHH
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAITL-------PYDT-QQLSKATRETAAIYL 143 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~t~-------~~d~-~~i~~~~~~~~~~ll 143 (318)
++.+++|+ -|+|.+||||.+..+. -+.++++ |++|.+..+ |.|.+-. ..++ +-..++...+.+++.
T Consensus 34 k~~v~~~~Py~nG~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~~~~ 113 (878)
T 2v0c_A 34 KQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLR 113 (878)
T ss_dssp EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCCCCcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 46777774 5569999999887552 2334433 788775443 3333211 1133 334556778888999
Q ss_pred HcCCCCC
Q 021028 144 ACGIDNS 150 (318)
Q Consensus 144 A~GiDpe 150 (318)
.+|+..+
T Consensus 114 ~LGi~~D 120 (878)
T 2v0c_A 114 LMGILYD 120 (878)
T ss_dssp HTTCCCC
T ss_pred HhCCccC
Confidence 9998654
No 81
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=76.09 E-value=3.1 Score=43.64 Aligned_cols=45 Identities=18% Similarity=0.242 Sum_probs=27.8
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.+.+|. -|+|.+||||.+..+. -+.++++ |++|.+..+ |.|.+
T Consensus 35 ~~~i~~~~Py~nG~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~~G~D~~G~ 85 (810)
T 1wkb_A 35 KFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFPMAWHITGS 85 (810)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBBCCBS
T ss_pred cEEEEeCCCCCCCCCccccchhHHHHHHHHHHHHcCCCccCcCCccCCCCC
Confidence 45555555 5679999999987552 2444443 788766433 44433
No 82
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=75.49 E-value=0.86 Score=48.53 Aligned_cols=59 Identities=25% Similarity=0.318 Sum_probs=35.5
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhhhhhCCccccccCCCCCccccCC-ccccCCCCcccccCCCCCCCccCCCCCCCC
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVP-EPLIPPAGARVMSLTDGLSKMSKSAPSDQS 293 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P-~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s 293 (318)
+-+|+...|.||... =.+|.++.-... .|. .| ..++.. .++... +| +|||||. +|
T Consensus 480 ~P~d~~v~G~Dii~~-W~a~~~~~~~~~-~g~---------------~Pfk~v~~h--G~vld~-~G-~KMSKSl---GN 535 (862)
T 1gax_A 480 YPGDVLVTGYDILFL-WVSRMEVSGYHF-MGE---------------RPFKTVLLH--GLVLDE-KG-QKMSKSK---GN 535 (862)
T ss_dssp CSBSCEEEEGGGTTT-THHHHHHHHHHH-SSS---------------CSBSEEEEE--CCEECT-TS-CBCCTTT---TC
T ss_pred CCceEEecCcccccc-HHHHHHHHHHHh-cCC---------------CcccEEEEe--eeEEcC-CC-CCccccC---CC
Confidence 568999999999753 456666655421 121 13 222211 234443 66 8999998 67
Q ss_pred eEec
Q 021028 294 RINL 297 (318)
Q Consensus 294 ~I~L 297 (318)
.|..
T Consensus 536 vIdP 539 (862)
T 1gax_A 536 VIDP 539 (862)
T ss_dssp CCCH
T ss_pred CCCH
Confidence 7754
No 83
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=74.59 E-value=3.6 Score=44.01 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=44.7
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEE-EeccceecC----------CC--CHHHH----HH--
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF-IVDLHAITL----------PY--DTQQL----SK-- 133 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~il-IaD~hA~t~----------~~--d~~~i----~~-- 133 (318)
++.+.+|. -|||.+||||.+..+. -+.++++ |+++.+. =-|-|.+-. +. ..++. ++
T Consensus 49 ~f~i~~~pPY~nG~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hGlpiE~~a~k~G~~~~~~~~~~f~~~~~~~~ 128 (917)
T 1ffy_A 49 TFILHDGPPYANGNLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHGLPIEQALTKKGVDRKKMSTAEFREKCKEFA 128 (917)
T ss_dssp BCCEECCCCBSSSCCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCSHHHHHHHHHHTCCSTTTCHHHHHHHHHHHH
T ss_pred ceeeCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhhHHHHHHHHHcCCCchhCCHHHHHHHHHHHH
Confidence 56777787 7889999999886542 2444443 7887654 445555521 11 12322 22
Q ss_pred --HHHHHHHHHHHcCC--CCCc
Q 021028 134 --ATRETAAIYLACGI--DNSK 151 (318)
Q Consensus 134 --~~~~~~~~llA~Gi--Dpek 151 (318)
+...+.+++..+|+ |.++
T Consensus 129 ~~~~~~~~~~~~rlG~~~Dwd~ 150 (917)
T 1ffy_A 129 LEQIELQKKDFRRLGVRGDFND 150 (917)
T ss_dssp HHHHHHHHHHHHTTTCCSCTTS
T ss_pred HHHHHHHHHHHHHhCeEEccCC
Confidence 33455667778888 5665
No 84
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=73.73 E-value=1.6 Score=43.67 Aligned_cols=28 Identities=18% Similarity=-0.003 Sum_probs=18.7
Q ss_pred HHhhhhhcccccEEEecCcc-hHHHHHHH
Q 021028 207 LMASDILLYQSDFVPVGEDQ-KQHLELTR 234 (318)
Q Consensus 207 LQaaDil~~~adivpvG~DQ-~~hi~l~R 234 (318)
-|+...|--..||-.+|.|. .+|++--.
T Consensus 244 am~~~~lg~~~DIH~gG~DLifpHhenei 272 (501)
T 3sp1_A 244 AMNLEYFKDALDIHLGGVDHIGVHHINEI 272 (501)
T ss_dssp HHHHHHTTTCCCEEEEEGGGTTTHHHHHH
T ss_pred HHHHHHcCCCceEEeeccccccchHHHHH
Confidence 34555554567999999997 45665443
No 85
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=70.90 E-value=2.1 Score=45.75 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=19.3
Q ss_pred ccccEEEecCcc-hHHHHHHHHHHHH
Q 021028 215 YQSDFVPVGEDQ-KQHLELTRELAER 239 (318)
Q Consensus 215 ~~adivpvG~DQ-~~hi~l~Rdia~k 239 (318)
+-+|+-.+|.|| .-|+-.+|-+-.-
T Consensus 542 ~PvD~yigG~EHailHllyaRf~~~~ 567 (880)
T 4arc_A 542 LPVDIYIGGIEHAIMHLLYFRFFHKL 567 (880)
T ss_dssp CSEEEEECCGGGTTTHHHHHHHHHHH
T ss_pred CCceEeecchhhHHHHHHHHHHHHHH
Confidence 468999999999 5688778755443
No 86
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=68.59 E-value=3.4 Score=42.24 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=27.0
Q ss_pred EEeeCCCCccchhhHHHHH--HHHHHHhc--cCcEE--EEEecc
Q 021028 82 VSGVQPTGSIHLGNYLGAI--KNWIALQN--SYETL--FFIVDL 119 (318)
Q Consensus 82 ~tGi~PTG~lHLGhyvg~l--~~~~~LQ~--g~~v~--ilIaD~ 119 (318)
|+|--|+|++||||..+.+ .-+.++.+ |++|+ .-|.||
T Consensus 149 ~~spN~~~plHvGHlRs~iiGD~laRil~~~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEEBCC
T ss_pred ecCCCCCCCCccchHHHHHHHHHHHHHHHHcCCCeeEEEeecCc
Confidence 4577888999999999766 23444433 78875 467884
No 87
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=66.49 E-value=3.9 Score=40.42 Aligned_cols=26 Identities=12% Similarity=0.049 Sum_probs=20.8
Q ss_pred ccc--EEEecCcchHHHHHHHHHHHHhh
Q 021028 216 QSD--FVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 216 ~ad--ivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
+.| |-.+|.||..|+.-...+++.++
T Consensus 234 ~~d~~Iyv~G~dq~~~f~~l~~~l~~lG 261 (464)
T 3fnr_A 234 GYGKCINIWGADHHGYIPRMKAAMEFLG 261 (464)
T ss_dssp SCSEEEEEEEGGGGGGHHHHHHHHHTTT
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHHHcC
Confidence 355 44799999999998888888776
No 88
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=64.23 E-value=1.8 Score=43.15 Aligned_cols=58 Identities=29% Similarity=0.428 Sum_probs=24.7
Q ss_pred ccccEEEecCcchH---HHHHHHHHHHHhhhhhCCccccccCCCCCccccCCccccCCCCcccccCC-CCCCCccCCCCC
Q 021028 215 YQSDFVPVGEDQKQ---HLELTRELAERVNYLYGGRKWKKLGGRGGAIFKVPEPLIPPAGARVMSLT-DGLSKMSKSAPS 290 (318)
Q Consensus 215 ~~adivpvG~DQ~~---hi~l~Rdia~k~n~~~g~~~~~~~~~~~~~~~~~P~~ll~~~~~~lp~L~-dg~~KMSKS~p~ 290 (318)
+..++-++|.|+.. ......+++.. -+|. ..|..++. .+|.. . +| +|||||.
T Consensus 229 l~~~vd~~G~Dh~~~h~s~~~~~~i~~~---alG~--------------~~p~~~h~---~~i~~-~g~g-~KmSKs~-- 284 (523)
T 1irx_A 229 FGVDFEPAGKDHLVAGSSYDTGKEIIKE---VYGK--------------EAPLSLMY---EFVGI-KGQK-GKMSGSK-- 284 (523)
T ss_dssp SCCCBCCEEHHHHSTTSHHHHHHHHHHH---HHCC--------------CCCBCCEE---CCEEE-SCC-----------
T ss_pred cCCCCcCCCcCccCCCcchhhHHHHHHH---HhCC--------------CCCeEEEE---EEEEe-CCCC-CCCCCcC--
Confidence 34455589999887 23344677632 2332 23544443 23432 2 34 8999998
Q ss_pred CCCeEec
Q 021028 291 DQSRINL 297 (318)
Q Consensus 291 ~~s~I~L 297 (318)
++.|.+
T Consensus 285 -Gn~i~~ 290 (523)
T 1irx_A 285 -GNVILL 290 (523)
T ss_dssp --CCCCH
T ss_pred -CCCCCH
Confidence 456643
No 89
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=62.08 E-value=3.7 Score=43.23 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=29.4
Q ss_pred CceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEEEe-cccee
Q 021028 78 KKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFFIV-DLHAI 122 (318)
Q Consensus 78 ~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~ilIa-D~hA~ 122 (318)
++.++.|. -|||.+||||.+..+. -+.++++ |++|.+..+ |-|.+
T Consensus 39 ~f~i~~~pPy~nG~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~Gl 89 (821)
T 1ile_A 39 RYTVYEGPPTANGLPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHGL 89 (821)
T ss_dssp BCCBCCCCCCTTSCCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCHH
T ss_pred cEEEecCCCCCCCCCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCCc
Confidence 56677777 7889999999886542 2334443 788765444 45544
No 90
>3cov_A Pantothenate synthetase; pantothenate biosynthesis, enzym ligase, drug design, ATP-binding, magnesium, metal-binding; 1.50A {Mycobacterium tuberculosis} SCOP: c.26.1.4 PDB: 3cow_A* 3coy_A* 3coz_A* 3imc_A* 3ime_A* 3img_A* 3iob_A* 3ioc_A* 3iod_A* 3ioe_A* 3iub_A* 3iue_A* 3ivc_A* 3ivg_A* 3ivx_A* 2a84_A* 1n2b_A* 1n2e_A* 1n2g_A* 1n2h_A* ...
Probab=61.46 E-value=7.2 Score=36.55 Aligned_cols=26 Identities=38% Similarity=0.464 Sum_probs=24.0
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhh
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
++|....|..-.|.+.+-|++.+.+|
T Consensus 152 ~P~~a~FG~Kd~qql~~lr~mv~dl~ 177 (301)
T 3cov_A 152 RPDRVFFGEKDYQQLVLIRQLVADFN 177 (301)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred CCCeEEECCCcccCHHHHHHHHHHcC
Confidence 78889999999999999999999987
No 91
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=59.56 E-value=4.2 Score=43.66 Aligned_cols=39 Identities=21% Similarity=0.229 Sum_probs=27.2
Q ss_pred CCceEEEee-CCCCccchhhHHHHHH--HHHHHhc--cCcEEEE
Q 021028 77 VKKRIVSGV-QPTGSIHLGNYLGAIK--NWIALQN--SYETLFF 115 (318)
Q Consensus 77 ~~~~i~tGi-~PTG~lHLGhyvg~l~--~~~~LQ~--g~~v~il 115 (318)
.++.++.|. -|||.+|+||.+..+. -+.++++ |++|.+.
T Consensus 34 ~kf~i~~~pPy~nG~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~~ 77 (967)
T 1wz2_A 34 KKFYITVAFPYLSGHLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (967)
T ss_dssp GCCBEEECCCBCSSCCBHHHHHHHHHHHHHHHHHHHTTCCCBCC
T ss_pred CcEEEEeCCCCCCCCcchhhhHHHHHHHHHHHHHHcCCCccCCC
Confidence 367888888 6789999999886442 2444443 7777654
No 92
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=50.00 E-value=7.3 Score=41.44 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=18.5
Q ss_pred ccccEEEecCcc-hHHHHHHHHHHH
Q 021028 215 YQSDFVPVGEDQ-KQHLELTRELAE 238 (318)
Q Consensus 215 ~~adivpvG~DQ-~~hi~l~Rdia~ 238 (318)
+-+|+..+|.|| .-|+-.+|=+..
T Consensus 530 ~P~D~yi~G~d~~ilhl~y~r~~~~ 554 (878)
T 2v0c_A 530 MPVDQYIGGVEHAVLHLLYSRFFTK 554 (878)
T ss_dssp CSBSEEECCGGGTTTHHHHHHHHHH
T ss_pred CCCeEEEechHHHHHHHHHHHHHHH
Confidence 469999999999 667766666554
No 93
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=46.73 E-value=70 Score=29.18 Aligned_cols=82 Identities=13% Similarity=0.244 Sum_probs=56.8
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhccCc-EEEEEeccceecC----CCCHHHHHHH--------HHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSYE-TLFFIVDLHAITL----PYDTQQLSKA--------TRETAAIYL 143 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~~-v~ilIaD~hA~t~----~~d~~~i~~~--------~~~~~~~ll 143 (318)
++..++.||-|=-.-|=+.++-.+..| .+.+++ |.|+++|.++--. ..+..+.++. -+.+...|.
T Consensus 28 ~g~HallGISpgNsyFs~d~L~~Li~W--a~~~F~~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i~ral~ 105 (257)
T 3oqi_A 28 RRRHVLVGISPFNSRFSEDYIHRLIAW--AVREFQSVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFAEKALE 105 (257)
T ss_dssp HTCEEEEEECTTSTTCCHHHHHHHHHH--HHHHCSEEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999998888889998888888 466664 7799999865432 2333322222 234555667
Q ss_pred HcCCCCCceEEEEcCCchh
Q 021028 144 ACGIDNSKASVFVQSHVRA 162 (318)
Q Consensus 144 A~GiDpek~~i~~qS~~~~ 162 (318)
+.|++.+ .++.=||+..
T Consensus 106 ~~g~~~~--~v~~~Sd~~~ 122 (257)
T 3oqi_A 106 AHGGNPE--DIHTFSDFAN 122 (257)
T ss_dssp HHTCCTT--CEEETTTTTT
T ss_pred HcCCCcc--cceeHHHhhc
Confidence 7788877 6777788753
No 94
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=45.14 E-value=3.8 Score=40.52 Aligned_cols=17 Identities=6% Similarity=-0.076 Sum_probs=6.9
Q ss_pred cccEE------------EecCcchHHHHH
Q 021028 216 QSDFV------------PVGEDQKQHLEL 232 (318)
Q Consensus 216 ~adiv------------pvG~DQ~~hi~l 232 (318)
-+|++ |||.||++|.|-
T Consensus 221 AaDil~~~~d~~~~~~vp~~~d~~~~~~~ 249 (451)
T 3foc_A 221 MLPVYSTYFDGLPFTRVPLPVGTGNEDAA 249 (451)
T ss_dssp HGGGSGGGGTTSGGGCCBCC---------
T ss_pred HHHHHHhhcCCCCccccccccccccchhh
Confidence 58998 899999999544
No 95
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=33.68 E-value=18 Score=36.86 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=21.8
Q ss_pred cccEEE--ecCcchHHHHHHHHHHHHhhh
Q 021028 216 QSDFVP--VGEDQKQHLELTRELAERVNY 242 (318)
Q Consensus 216 ~adivp--vG~DQ~~hi~l~Rdia~k~n~ 242 (318)
+.|-++ +|.||..|+.....+++.++.
T Consensus 363 ~~d~~IyV~g~~q~~~f~q~~~~~~~lG~ 391 (607)
T 1f7u_A 363 HFDKMIYVIASQQDLHAAQFFEILKQMGF 391 (607)
T ss_dssp CCSEEEEECCGGGHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEcChHhhHHHHHHHHHHHcCC
Confidence 445555 999999999999988888763
No 96
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=33.39 E-value=6.9 Score=40.62 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=18.5
Q ss_pred cCCccccCCCCcccccCCCCCCCccCCCCCCCCeEecc
Q 021028 261 KVPEPLIPPAGARVMSLTDGLSKMSKSAPSDQSRINLL 298 (318)
Q Consensus 261 ~~P~~ll~~~~~~lp~L~dg~~KMSKS~p~~~s~I~L~ 298 (318)
+.|..++.. .++. + +| +|||||. +|.|+..
T Consensus 327 ~~Pk~v~~h--G~v~-~-~G-~KMSKS~---GNvV~p~ 356 (722)
T 1rqg_A 327 NLPYDIPAN--EYLT-L-EG-KKFSTSR---NWAIWVH 356 (722)
T ss_dssp CCCSBCCEE--CCEE-E-TT-EECBTTT---TBSCBHH
T ss_pred CCCCEEEEe--eeEE-e-CC-eeeeeeC---CCcCCHH
Confidence 456555532 2332 2 66 8999998 6788753
No 97
>3uk2_A Pantothenate synthetase; AMP, structural genomics, seattle S genomics center for infectious disease, ssgcid, ligase; HET: AMP; 2.25A {Burkholderia thailandensis} SCOP: c.26.1.0
Probab=32.28 E-value=16 Score=33.85 Aligned_cols=27 Identities=19% Similarity=0.361 Sum_probs=25.2
Q ss_pred ccccEEEecCcchHHHHHHHHHHHHhh
Q 021028 215 YQSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 215 ~~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
.++|....|..-.|.+.+.|.+.+.+|
T Consensus 140 v~Pd~A~FG~Kd~qql~~ir~mv~dl~ 166 (283)
T 3uk2_A 140 VQPRVAVFGKKDYQQLMIVRRMCQQLA 166 (283)
T ss_dssp HCCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred cCCCeeEeCCchhhhHHHHHHHHHHcC
Confidence 379999999999999999999999987
No 98
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=32.24 E-value=76 Score=28.77 Aligned_cols=84 Identities=14% Similarity=0.147 Sum_probs=58.4
Q ss_pred CCceEEEeeCCCCccchhhHHHHHHHHHHHhccC-cEEEEEeccceecC----CCCHHHHHH--------HHHHHHHHHH
Q 021028 77 VKKRIVSGVQPTGSIHLGNYLGAIKNWIALQNSY-ETLFFIVDLHAITL----PYDTQQLSK--------ATRETAAIYL 143 (318)
Q Consensus 77 ~~~~i~tGi~PTG~lHLGhyvg~l~~~~~LQ~g~-~v~ilIaD~hA~t~----~~d~~~i~~--------~~~~~~~~ll 143 (318)
++..++.||-|=-.-|=+.++-.+..| .+.++ +|-|+++|.+.--+ .++..+.++ .-+.+...|.
T Consensus 28 ~g~HallGVSpgNsyFs~drl~~li~W--a~~~F~~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~ 105 (247)
T 3oqv_A 28 RGEHALIGISAGNSYFSQKNTVMLLQW--AGQRFERTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLE 105 (247)
T ss_dssp CEEEEEEEEESSCTTCCHHHHHHHHHH--HHHHEEEEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCCcccCHHHHHHHHHH--HHccCCceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999888889988888888 46665 47799999954321 334322222 2234556677
Q ss_pred HcCCCCCceEEEEcCCchh
Q 021028 144 ACGIDNSKASVFVQSHVRA 162 (318)
Q Consensus 144 A~GiDpek~~i~~qS~~~~ 162 (318)
.+|.+.++..+..=||+..
T Consensus 106 ~~~~~~~~~rv~~~Sd~~~ 124 (247)
T 3oqv_A 106 SVGDHAERFRVRSLSELQE 124 (247)
T ss_dssp HHCTTGGGEEEEEHHHHTT
T ss_pred HhCCCccCceeeeHHHhhC
Confidence 7899888777777787643
No 99
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=27.70 E-value=1.9e+02 Score=23.07 Aligned_cols=58 Identities=12% Similarity=0.152 Sum_probs=33.4
Q ss_pred HHHHHHHHHhccC---cEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 021028 98 GAIKNWIALQNSY---ETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGIDNSKASVF 155 (318)
Q Consensus 98 g~l~~~~~LQ~g~---~v~ilIaD~hA~t~--~~d~~~i~~~~~~~~~~llA~GiDpek~~i~ 155 (318)
..|..+...-..+ ...|.|.....-++ .++++.-.+++......+...|+++++..+.
T Consensus 39 ~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~ 101 (148)
T 4erh_A 39 QALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLISKGIPSDKISAR 101 (148)
T ss_dssp HHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHHTTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3444554433222 34455444333333 3456666677777777777889999886543
No 100
>3inn_A Pantothenate synthetase; ssgcid, SBRI, UW, decode, NIH, niaid, pantoate beta alanine ligase, ATP-binding, cytoplasm, ligase; HET: ATP; 2.10A {Brucella melitensis}
Probab=22.72 E-value=39 Score=31.78 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=24.9
Q ss_pred cccEEEecCcchHHHHHHHHHHHHhh
Q 021028 216 QSDFVPVGEDQKQHLELTRELAERVN 241 (318)
Q Consensus 216 ~adivpvG~DQ~~hi~l~Rdia~k~n 241 (318)
++|....|+--.|-+.+.|.+.+.+|
T Consensus 161 ~Pd~A~FGeKD~QQl~vIrrmV~DL~ 186 (314)
T 3inn_A 161 GPDAAYFGEKDFQQLVIIRRMVDDMA 186 (314)
T ss_dssp CCSEEEEETTSHHHHHHHHHHHHHTT
T ss_pred CCCEEEECccHHHHHHHHHHHHHHcC
Confidence 79999999999999999999999988
No 101
>3ag6_A Pantothenate synthetase; ATP-dependent enzyme, ATP-binding, nucleotide-binding, pantothenate biosynthesis; HET: PAJ PG4; 1.85A {Staphylococcus aureus} PDB: 3ag5_A* 2x3f_A*
Probab=21.00 E-value=44 Score=30.89 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=0.0
Q ss_pred EeeCCC-CccchhhHHHHHHHHHHHhccCcEEEEEeccceecC--CCCHHHHHHHHHHHHHHHHHcCCC
Q 021028 83 SGVQPT-GSIHLGNYLGAIKNWIALQNSYETLFFIVDLHAITL--PYDTQQLSKATRETAAIYLACGID 148 (318)
Q Consensus 83 tGi~PT-G~lHLGhyvg~l~~~~~LQ~g~~v~ilIaD~hA~t~--~~d~~~i~~~~~~~~~~llA~GiD 148 (318)
+|+=|| |.+|.|| +.-..+..+..+.+++--+-|-.-. +.|.+.--...++-++.+.+.|+|
T Consensus 25 I~fVpTmG~lH~GH----~~LI~~a~~~a~~vVvsffvnP~qf~~~ed~~~yprtle~d~~ll~~~GvD 89 (283)
T 3ag6_A 25 IGFIPTMGALHDGH----LTMVRESVSTNDITIVSVFVNPLQFGPNEDFDAYPRQIDKDLELVSEVGAD 89 (283)
T ss_dssp EEEEEECSSCCHHH----HHHHHHHHTTSSEEEEEECCCGGGCCTTSSTTTSCCCHHHHHHHHHHHTCS
T ss_pred EEEEECCccccHHH----HHHHHHHHHhCCEEEEEEeCChhhcCCccccccCCCCHHHHHHHHHhCCCC
Done!