BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021029
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
 pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
           With Eticlopride
          Length = 481

 Score = 29.6 bits (65), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 6/64 (9%)

Query: 8   VPSSSKMQWVLSSKEINFPFPLGLTLLHMVFSSVLCFLLTK----VFKVMKVEDGMTLEI 63
           V S S   +V+ S  ++F  P G+T+L  V++ +   L  +    +F+++++++G+ L+I
Sbjct: 189 VCSISNPDFVIYSSVVSFYLPFGVTVL--VYARIYVVLKQRRRKNIFEMLRIDEGLRLKI 246

Query: 64  YTTS 67
           Y  +
Sbjct: 247 YKDT 250


>pdb|2CVE|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein
           Tt1547 From Thermus Thermophilus Hb8
          Length = 191

 Score = 27.7 bits (60), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%)

Query: 133 VVASYGEININWIGVVYQMGGVVGEALRLIFMEILVKRKGL 173
           VV  +G + +   G+V   GGV  EALR      LV+R GL
Sbjct: 90  VVRYFGGVKLGAGGLVRAYGGVAAEALRRAPKVPLVERVGL 130


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.140    0.426 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,292,032
Number of Sequences: 62578
Number of extensions: 254773
Number of successful extensions: 505
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (24.3 bits)