Query 021029
Match_columns 318
No_of_seqs 158 out of 1406
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 11:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021029.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021029hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.1E-07 3.8E-12 73.0 6.2 66 223-289 39-105 (137)
2 3b5d_A Multidrug transporter E 98.4 8.9E-07 3E-11 65.5 8.3 72 68-139 33-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 6.8E-07 2.3E-11 68.6 5.6 71 68-138 33-104 (137)
4 3b5d_A Multidrug transporter E 98.0 2.2E-05 7.6E-10 57.9 8.3 60 228-288 44-104 (110)
5 3l1l_A Arginine/agmatine antip 71.7 13 0.00044 33.3 8.2 22 270-291 409-430 (445)
6 3rko_J NADH-quinone oxidoreduc 71.2 36 0.0012 26.8 10.6 24 256-280 128-151 (184)
7 2zxe_G FXYD10, phospholemman-l 31.0 35 0.0012 22.3 2.5 18 272-289 25-42 (74)
8 2klu_A T-cell surface glycopro 22.3 38 0.0013 21.6 1.4 9 277-285 21-29 (70)
9 2jp3_A FXYD domain-containing 22.2 75 0.0026 20.3 2.8 18 272-289 23-40 (67)
10 2jo1_A Phospholemman; FXYD1, N 18.0 1.1E+02 0.0038 19.7 2.9 35 272-306 22-56 (72)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.55 E-value=1.1e-07 Score=73.01 Aligned_cols=66 Identities=18% Similarity=0.115 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhh-hhhhhHHHhhhhHhhcCCcccchhHHHHHHHHHHHHHHHhhcc
Q 021029 223 CTFALNLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNHK 289 (318)
Q Consensus 223 ~~~~~~~~~~~~~~~~~a~~~s~~-~~l~~v~~~l~~~~~~~e~~~s~~~~~G~~lii~g~~~~~~~~ 289 (318)
+..+.+++...++++.++..+..+ ..+.|+.+.++|+++|||+ +|+.+++|++++++|++..+..+
T Consensus 39 ~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~-ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 39 CYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcCC
Confidence 333444556667999999988777 8999999999999999999 99999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.43 E-value=8.9e-07 Score=65.50 Aligned_cols=72 Identities=15% Similarity=0.201 Sum_probs=64.7
Q ss_pred HhHHHHHHHHHHHHhhhhhccchHHHHHHH-HHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhhhheecCc
Q 021029 68 VIPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGE 139 (318)
Q Consensus 68 ~l~~~~~~~~~~~~~~~al~~~~~~~~~vl-~~~~pv~~~l~~~~~l~ek~~~~~~~~i~l~~~Gv~~~~~~~ 139 (318)
.+...+++.....+...++++.|.+.+..+ .++.|+++.+++++++||+++..+++++.+++.|+.+....+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345566788888999999999999999888 899999999999999999999999999999999999876543
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.32 E-value=6.8e-07 Score=68.59 Aligned_cols=71 Identities=15% Similarity=0.203 Sum_probs=53.2
Q ss_pred HhHHHHHHHHHHHHhhhhhccchHHHHHHH-HHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhhhheecC
Q 021029 68 VIPIGAMFAMTLWLGNTAYLYISVAFAQML-KAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYG 138 (318)
Q Consensus 68 ~l~~~~~~~~~~~~~~~al~~~~~~~~~vl-~~~~pv~~~l~~~~~l~ek~~~~~~~~i~l~~~Gv~~~~~~ 138 (318)
.+...+++++...+++.++++.+++.+..+ .++.|+++.++++++++|+++..+++|+.+++.|+.+....
T Consensus 33 ~~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp -CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 455567788899999999999999999888 89999999999999999999999999999999999987543
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.03 E-value=2.2e-05 Score=57.91 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcchhhhhhh-hhhhhHHHhhhhHhhcCCcccchhHHHHHHHHHHHHHHHhhc
Q 021029 228 NLSVFLVISHTSALTIRVA-GVVKDWVVVLFSALLFADTKLTIINLFGYGIAIAGVAAYNNH 288 (318)
Q Consensus 228 ~~~~~~~~~~~~a~~~s~~-~~l~~v~~~l~~~~~~~e~~~s~~~~~G~~lii~g~~~~~~~ 288 (318)
.+....++++.+...+... ..+.|+...++++++|||+ +|+.+++|+.+++.|+...+..
T Consensus 44 ~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~-~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 44 FWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR-LDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHHhcC
Confidence 4445557899888888666 8999999999999999999 9999999999999999988754
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=71.66 E-value=13 Score=33.35 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHhhcccc
Q 021029 270 INLFGYGIAIAGVAAYNNHKLK 291 (318)
Q Consensus 270 ~~~~G~~lii~g~~~~~~~~~~ 291 (318)
....|..+++.|+.+|...+++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~ 430 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNR 430 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 4566888888999888776544
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=71.23 E-value=36 Score=26.81 Aligned_cols=24 Identities=13% Similarity=0.122 Sum_probs=18.9
Q ss_pred hhhHhhcCCcccchhHHHHHHHHHH
Q 021029 256 LFSALLFADTKLTIINLFGYGIAIA 280 (318)
Q Consensus 256 l~~~~~~~e~~~s~~~~~G~~lii~ 280 (318)
-+|..++++- .=+.+..|..+..+
T Consensus 128 ~iG~~Lft~Y-~lpFElaSvlLLvA 151 (184)
T 3rko_J 128 AVGITLFGPY-VLAVELASMLLLAG 151 (184)
T ss_dssp HHHHHHTTTS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 5777888888 88888998887654
No 7
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=31.05 E-value=35 Score=22.26 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 021029 272 LFGYGIAIAGVAAYNNHK 289 (318)
Q Consensus 272 ~~G~~lii~g~~~~~~~~ 289 (318)
+++.++.+.|+++..-.|
T Consensus 25 ifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 455566677777665444
No 8
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=22.30 E-value=38 Score=21.63 Aligned_cols=9 Identities=11% Similarity=0.556 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 021029 277 IAIAGVAAY 285 (318)
Q Consensus 277 lii~g~~~~ 285 (318)
+.++|.+++
T Consensus 21 ll~~glcI~ 29 (70)
T 2klu_A 21 LLFIGLGIF 29 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344555555
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=22.16 E-value=75 Score=20.29 Aligned_cols=18 Identities=39% Similarity=0.484 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 021029 272 LFGYGIAIAGVAAYNNHK 289 (318)
Q Consensus 272 ~~G~~lii~g~~~~~~~~ 289 (318)
+++.++.+.|+++..-.+
T Consensus 23 ifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 23 IFGGLLCIAGIALALSGK 40 (67)
T ss_dssp HHHHHHHHHHHHHHHTTH
T ss_pred hhHHHHHHHHHHHHHcCc
Confidence 455566677776655443
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=17.97 E-value=1.1e+02 Score=19.71 Aligned_cols=35 Identities=6% Similarity=0.059 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhcccCCccccc
Q 021029 272 LFGYGIAIAGVAAYNNHKLKKEASRAISDDSQQTQ 306 (318)
Q Consensus 272 ~~G~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (318)
+++.++.+.|+++..-.+-+-+.+++.++....++
T Consensus 22 ifA~vLfi~GI~iilS~KckCk~~qk~r~~~p~~e 56 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRRCRCKFNQQQRTGEPDEE 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCTTTSSSCCCTT
T ss_pred HHHHHHHHHHHHHHHcCccccCCCCCCCCCCCccc
Done!