Query 021029
Match_columns 318
No_of_seqs 158 out of 1406
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 11:42:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021029.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021029hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 22.9 38 0.0028 15.6 3.1 17 144-160 2-18 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 16.9 2.2E+02 0.016 22.1 14.6 18 271-288 187-204 (447)
3 d1iwga8 f.35.1.1 (A:513-566,A: 13.7 2.3E+02 0.017 20.6 11.1 31 252-283 95-125 (222)
4 d1u7ga_ f.44.1.1 (A:) Ammonium 12.8 3.2E+02 0.023 21.9 21.8 61 103-165 240-301 (383)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 7.6 2E+02 0.014 17.9 3.4 34 119-156 83-116 (132)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 7.1 2.5E+02 0.019 19.9 4.5 33 252-285 77-109 (199)
7 d1xmea1 f.24.1.1 (A:14-562) Ba 6.7 89 0.0065 27.0 1.8 17 269-285 455-471 (549)
8 d3dtub2 f.17.2.1 (B:30-129) Ba 4.8 1.7E+02 0.012 18.4 1.9 21 271-291 35-55 (100)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.4 6.6E+02 0.048 18.4 7.7 62 68-133 5-66 (248)
10 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.8 2.6E+02 0.019 17.7 2.2 19 272-290 42-60 (107)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=22.86 E-value=38 Score=15.63 Aligned_cols=17 Identities=24% Similarity=0.169 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021029 144 WIGVVYQMGGVVGEALR 160 (318)
Q Consensus 144 ~~G~~~~l~s~~~~a~~ 160 (318)
.+|.+.+-++.++||.|
T Consensus 2 vlgli~~tl~glf~aay 18 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAY 18 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHH
Confidence 36888888888999886
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=16.87 E-value=2.2e+02 Score=22.10 Aligned_cols=18 Identities=6% Similarity=0.117 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 021029 271 NLFGYGIAIAGVAAYNNH 288 (318)
Q Consensus 271 ~~~G~~lii~g~~~~~~~ 288 (318)
.+.+...++.++..+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhHHHHHHHHHHhc
Confidence 344444555555554443
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.70 E-value=2.3e+02 Score=20.60 Aligned_cols=31 Identities=19% Similarity=0.022 Sum_probs=23.1
Q ss_pred HHHhhhhHhhcCCcccchhHHHHHHHHHHHHH
Q 021029 252 WVVVLFSALLFADTKLTIINLFGYGIAIAGVA 283 (318)
Q Consensus 252 v~~~l~~~~~~~e~~~s~~~~~G~~lii~g~~ 283 (318)
+.+.+.+..+.+.+ ++....+|.++.++-..
T Consensus 95 ~~~~~~~l~~~g~~-~~~~~~~g~i~l~Gi~v 125 (222)
T d1iwga8 95 VIGALLAATFRGLT-NDVYFQVGLLTTIGLSA 125 (222)
T ss_dssp HHHHHHHHHHTTCC-BCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCc-hhhhhcccccchhhhhh
Confidence 44566778888998 99999998777555443
No 4
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=12.75 E-value=3.2e+02 Score=21.85 Aligned_cols=61 Identities=11% Similarity=-0.069 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcccccchhHHHHHHHHhhhhhheecCcccch-HHHHHHHHHHHHHHHHHHHHHH
Q 021029 103 VAVFILGVAAGLEVMSCRMLLIMSVISFGVVVASYGEININ-WIGVVYQMGGVVGEALRLIFME 165 (318)
Q Consensus 103 v~~~l~~~~~l~ek~~~~~~~~i~l~~~Gv~~~~~~~~~~~-~~G~~~~l~s~~~~a~~~v~~~ 165 (318)
..+.+....+.++|++......-. +.|++-++......+ +...+.+.++++..-....+.|
T Consensus 240 ~~~~~~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~ 301 (383)
T d1u7ga_ 240 ILGWIFGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLK 301 (383)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHH
Confidence 333344444556778776655433 335554443332233 3346666665544433333333
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=7.65 E-value=2e+02 Score=17.92 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=22.8
Q ss_pred hhHHHHHHHHhhhhhheecCcccchHHHHHHHHHHHHH
Q 021029 119 CRMLLIMSVISFGVVVASYGEININWIGVVYQMGGVVG 156 (318)
Q Consensus 119 ~~~~~~i~l~~~Gv~~~~~~~~~~~~~G~~~~l~s~~~ 156 (318)
.+++++ .-.|+++.+.+|.+.+-+. +|.+++.+|
T Consensus 83 rkkyva---sylgvimasdgdiddnela-lwtlistlc 116 (132)
T d2h5na1 83 RKKYVA---SYLGVIMASDGDIDDNELA-LWTLISTLC 116 (132)
T ss_dssp HHHHHH---HHHHHHSCBTTBCCHHHHH-HHHHHHHHH
T ss_pred HHHHHH---HHhhheeccCCCCCccHhH-HHHHHHHHh
Confidence 344444 3458999988888776554 677777665
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=2.5e+02 Score=19.86 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=22.6
Q ss_pred HHHhhhhHhhcCCcccchhHHHHHHHHHHHHHHH
Q 021029 252 WVVVLFSALLFADTKLTIINLFGYGIAIAGVAAY 285 (318)
Q Consensus 252 v~~~l~~~~~~~e~~~s~~~~~G~~lii~g~~~~ 285 (318)
+........++|.+ ++.....+..+.+....-+
T Consensus 77 i~~~~~~m~~~g~~-l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 77 LLGTFAVLAAFGFS-INTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp HHHHHHHHHTTTCC-SCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhcCCCc-hHHHHHHHHHHHHHHhccc
Confidence 34444556778888 9988888877777665444
No 7
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=6.69 E-value=89 Score=26.96 Aligned_cols=17 Identities=6% Similarity=0.266 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHHHH
Q 021029 269 IINLFGYGIAIAGVAAY 285 (318)
Q Consensus 269 ~~~~~G~~lii~g~~~~ 285 (318)
....+|..+...|.+.+
T Consensus 455 ~~~~igg~i~~~g~l~f 471 (549)
T d1xmea1 455 VFNVLAGIVLLVALLLF 471 (549)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566777777776544
No 8
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.79 E-value=1.7e+02 Score=18.37 Aligned_cols=21 Identities=10% Similarity=0.113 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q 021029 271 NLFGYGIAIAGVAAYNNHKLK 291 (318)
Q Consensus 271 ~~~G~~lii~g~~~~~~~~~~ 291 (318)
-..++.+++.|...|...+.+
T Consensus 35 i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 35 IIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 344445555566666555433
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.36 E-value=6.6e+02 Score=18.45 Aligned_cols=62 Identities=10% Similarity=-0.077 Sum_probs=35.0
Q ss_pred HhHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHcccccchhHHHHHHHHhhhhh
Q 021029 68 VIPIGAMFAMTLWLGNTAYLYISVAFAQMLKAIMPVAVFILGVAAGLEVMSCRMLLIMSVISFGVV 133 (318)
Q Consensus 68 ~l~~~~~~~~~~~~~~~al~~~~~~~~~vl~~~~pv~~~l~~~~~l~ek~~~~~~~~i~l~~~Gv~ 133 (318)
+.++++..++..+.....+..-+...+. ..-+.+.++.++++.+|.-..|++-=.++++.+.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 3445555555554444444444433333 3445666777888888887777775544444443
No 10
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=3.76 E-value=2.6e+02 Score=17.70 Aligned_cols=19 Identities=5% Similarity=-0.057 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhccc
Q 021029 272 LFGYGIAIAGVAAYNNHKL 290 (318)
Q Consensus 272 ~~G~~lii~g~~~~~~~~~ 290 (318)
..++.+.+.|...|...+.
T Consensus 42 ~~~I~~~V~~~~~~~~~~~ 60 (107)
T d3ehbb2 42 ITAVTIFVCLLLLICIVRF 60 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhhhh
Confidence 3344444556666655443
Done!