BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021031
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOD|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 289
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIP-CITRPFAQCQSLSIYKQLVLGARVID 102
K+WM+ L P+ +L + PGTHD+ + I +T+P AQ Q++S+Y+QL G R ID
Sbjct: 18 KQWMSAL-PDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYID 76
Query: 103 IRIQEDRRVCHG-ILLTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEF 156
IR +++ + HG I L S+ V+ + +FL + E II+ ++ E D ++
Sbjct: 77 IRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDY 131
>pdb|2PLC|A Chain A, Phosphatidylinositol-Specific Phospholipase C From
Listeria Monocytogenes
Length = 274
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 67/115 (58%), Gaps = 3/115 (2%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIP-CITRPFAQCQSLSIYKQLVLGARVID 102
K+WM+ L P+ +L + PGTHD+ + I +T+P AQ Q++S+Y+QL G R ID
Sbjct: 4 KQWMSAL-PDTTNLAALSIPGTHDTMSYNGDITWTLTKPLAQTQTMSLYQQLEAGIRYID 62
Query: 103 IRIQEDRRVCHG-ILLTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEF 156
IR +++ + HG I L S+ V+ + +FL + E II+ ++ E D ++
Sbjct: 63 IRAKDNLNIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDY 117
>pdb|7PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant R163k
Length = 298
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|3PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274s
Length = 298
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|4PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D274n
Length = 298
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|1GYM|A Chain A, Phosphatidylinositol-Specific Phospholipase C In Complex
With Glucosamine-(Alpha-1-6)-Myo-Inositol
pdb|1PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C
pdb|1PTG|A Chain A, Phosphatidylinositol-specific Phospholipase C In Complex
With Myo-inositol
Length = 298
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|2PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant D198e
Length = 298
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 65/121 (53%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|1T6M|A Chain A, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis.
pdb|1T6M|B Chain B, X-Ray Structure Of The R70d Pi-Plc Enzyme: Insight Into
The Role Of Calcium And Surrounding Amino Acids On
Active Site Geometry And Catalysis
Length = 299
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 9 ENWSKWMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 66
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF 148
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+
Sbjct: 67 FDIDGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEY 119
>pdb|3EA1|A Chain A, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA1|B Chain B, Crystal Structure Of The Y247sY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA2|A Chain A, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
pdb|3EA2|B Chain B, Crystal Structure Of The Myo-Inositol Bound Y247sY251S
Mutant Of Phosphatidylinositol-Specific Phospholipase C
From Bacillus Thuringiensis
Length = 298
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF 148
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEY 118
>pdb|3EA3|A Chain A, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
pdb|3EA3|B Chain B, Crystal Structure Of The Y246sY247SY248SY251S MUTANT OF
Phosphatidylinositol-Specific Phospholipase C From
Bacillus Thuringiensis
Length = 298
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 7/113 (6%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF 148
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEY 118
>pdb|2OR2|A Chain A, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
pdb|2OR2|B Chain B, Structure Of The W47aW242A MUTANT OF BACTERIAL
Phosphatidylinositol-Specific Phospholipase C
Length = 296
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 7/113 (6%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGTHDS T K+ P I + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDNIPLARISIPGTHDSGTFKLQNP-IKQVAGMTQEYDFRYQMDHGARI 65
Query: 101 IDI--RIQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF 148
DI R+ +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEY 118
>pdb|5PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant H32a
Length = 298
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGT DS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTADSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDIR--IQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DIR + +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|6PTD|A Chain A, Phosphatidylinositol-Specific Phospholipase C Mutant H32l
Length = 298
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 41 QDRKKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARV 100
++ KWM + P+ + L +I PGT DS T K+ P I + + Q Q+ GAR+
Sbjct: 8 ENWSKWMQPI-PDSIPLARISIPGTLDSGTFKLQNP-IKQVWGMTQEYDFRYQMDHGARI 65
Query: 101 IDIR--IQEDRRVC--HGILLTY-SVDVVINDVKKFLAETDSEIIILEIRTEF----GHE 151
DIR + +D + HG L Y ++ IN+ K+FL + SE II+ ++ E+ G E
Sbjct: 66 FDIRGRLTDDNTIVLHHGPLYLYVTLHEFINEAKQFLKDNPSETIIMSLKKEYEDMKGAE 125
Query: 152 D 152
D
Sbjct: 126 D 126
>pdb|4F2U|A Chain A, Structure Of The N254yH258Y DOUBLE MUTANT OF THE
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 9 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 66
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 67 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 124
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 125 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 174
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 175 GYGADTSGIQWADNATFETKINNGSLNLKVQ 205
>pdb|3V1H|A Chain A, Structure Of The H258y Mutant Of
Phosphatidylinositol-Specific Phospholipase C From
Staphylococcus Aureus
Length = 306
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 7 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 64
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 65 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 122
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 123 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 172
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 173 GYGADTSGIQWADNATFETKINNGSLNLKVQ 203
>pdb|3V16|A Chain A, An Intramolecular Pi-Cation Latch In
Phosphatidylinositol-Specific Phospholipase C From
S.Aureus Controls Substrate Access To The Active Site
Length = 303
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 9 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 66
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 67 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 124
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 125 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 174
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 175 GYGADTSGIQWADNATFETKINNGSLNLKVQ 205
>pdb|4F2T|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 9 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 66
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 67 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 124
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 125 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 174
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 175 GYGADTSGIQWADNATFETKINNGSLNLKVQ 205
>pdb|3V18|A Chain A, Structure Of The Phosphatidylinositol-Specific
Phospholipase C From Staphylococcus Aureus
Length = 304
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 8 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 65
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 66 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 123
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 124 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 173
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 174 GYGADTSGIQWADNATFETKINNGSLNLKVQ 204
>pdb|4F2B|A Chain A, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
pdb|4F2B|B Chain B, Modulation Of S.Aureus Phosphatidylinositol-Specific
Phospholipase C Membrane Binding
Length = 310
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 91/211 (43%), Gaps = 32/211 (15%)
Query: 44 KKWMAGLNPEKVHLNKILWPGTHDSATNKIGIPCITRPFAQCQSLSIYKQLVLGARVIDI 103
+ WM+ L+ K HL +I PG+HDS + + P + +A+ Q Q+ G R DI
Sbjct: 9 ENWMSKLDDGK-HLTEINIPGSHDSGSFTLKDP-VKSVWAKTQDKDYLTQMKSGVRFFDI 66
Query: 104 RIQEDR----RVCHGIL-LTYSVDVVINDVKKFLAETDSEIIILEIRTEFGHEDPPEFDK 158
R + V HG++ L + + ++D K +L+ +E I++ ++ ++ + + K
Sbjct: 67 RGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDY--DSDSKVTK 124
Query: 159 YLEEQLGEF---------LIHQDDNAFNKTIAELLPKRVICVWKPRKSPQPKAGGPLWSA 209
EE E+ L + NA N T+ E K V+ + GG +
Sbjct: 125 TFEEIFREYYYNNPQYQNLFYTGSNA-NPTLKETKGKIVLF---------NRMGGTYIKS 174
Query: 210 GYLKDN----WVDTDLPSTKFDSNIKHLSQQ 236
GY D W D TK ++ +L Q
Sbjct: 175 GYGADTSGIQWADNATFETKINNGSLNLKVQ 205
>pdb|1F9M|A Chain A, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
pdb|1F9M|B Chain B, Crystal Structure Of Thioredoxin F From Spinach
Chloroplast (Short Form)
Length = 112
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 154 PEFDKYLEEQLGEFLIHQDDNAFNKTIAELLPKRVICVWKPRKS 197
P+++K EE L + D N NKT+A+ L RV+ +K K
Sbjct: 45 PKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKE 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,258,671
Number of Sequences: 62578
Number of extensions: 448459
Number of successful extensions: 884
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 860
Number of HSP's gapped (non-prelim): 25
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)