Your job contains 1 sequence.
>021032
MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS
IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP
PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS
DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA
ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ
MRAAQSLIHAFILCGVTS
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021032
(318 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 415 6.7e-78 2
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 190 8.4e-25 3
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 191 5.0e-24 2
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 213 4.8e-19 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 137 5.5e-15 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 148 9.1e-15 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 133 2.1e-14 2
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 201 5.7e-14 1
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 155 7.2e-11 1
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 107 9.5e-10 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 114 3.1e-09 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 114 3.1e-09 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 114 3.1e-09 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 114 3.1e-09 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 114 3.1e-09 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 114 3.1e-09 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 134 3.9e-09 2
FB|FBgn0015907 - symbol:bl "bancal" species:7227 "Drosoph... 106 5.6e-09 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 110 1.0e-08 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 109 1.1e-08 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 129 1.2e-08 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 101 1.4e-08 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 110 1.4e-08 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 110 2.7e-08 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 109 3.0e-08 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 109 3.5e-08 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 106 3.5e-08 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 100 4.1e-08 3
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 100 4.1e-08 3
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 109 4.1e-08 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 101 4.4e-08 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 101 4.4e-08 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 101 4.5e-08 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 103 6.8e-08 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 101 7.1e-08 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 101 7.1e-08 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 102 7.2e-08 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 100 1.2e-07 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 103 1.3e-07 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 101 1.4e-07 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 101 2.1e-07 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 101 2.1e-07 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 101 2.2e-07 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 98 2.8e-07 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 96 3.3e-07 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 96 3.6e-07 2
ASPGD|ASPL0000045500 - symbol:AN10257 species:162425 "Eme... 113 5.2e-07 2
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 142 5.2e-07 1
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 94 6.0e-07 2
WB|WBGene00017816 - symbol:F26B1.2b species:6239 "Caenorh... 95 1.1e-06 2
UNIPROTKB|P91277 - symbol:F26B1.2 "Protein F26B1.2, isofo... 95 1.1e-06 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 101 1.6e-06 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 96 1.7e-06 2
UNIPROTKB|Q5T6W5 - symbol:HNRNPK "Heterogeneous nuclear r... 108 1.9e-06 2
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 108 2.4e-06 2
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 108 2.4e-06 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 108 2.4e-06 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 108 2.4e-06 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 108 2.4e-06 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 108 2.4e-06 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 92 2.8e-06 2
ZFIN|ZDB-GENE-050706-149 - symbol:zgc:110045 "zgc:110045"... 88 3.1e-06 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 108 3.9e-06 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 108 3.9e-06 2
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 108 4.0e-06 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 108 5.3e-06 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 84 8.8e-06 2
UNIPROTKB|C9JZY3 - symbol:PCBP4 "Poly(rC)-binding protein... 87 1.1e-05 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 95 1.5e-05 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 95 1.5e-05 2
UNIPROTKB|E2RJ54 - symbol:E2RJ54 "Uncharacterized protein... 93 1.6e-05 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 94 1.9e-05 2
UNIPROTKB|E1B8C6 - symbol:E1B8C6 "Uncharacterized protein... 106 2.0e-05 1
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 91 2.4e-05 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 93 2.5e-05 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 93 2.5e-05 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 93 2.5e-05 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 84 2.8e-05 2
FB|FBgn0262735 - symbol:Imp "IGF-II mRNA-binding protein"... 124 8.7e-05 1
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 92 0.00010 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 84 0.00014 2
UNIPROTKB|B3KM64 - symbol:PCBP4 "cDNA FLJ10382 fis, clone... 95 0.00019 2
SGD|S000000437 - symbol:PBP2 "RNA binding protein" specie... 96 0.00021 2
UNIPROTKB|H3BSS4 - symbol:PCBP2 "Poly(rC)-binding protein... 110 0.00025 1
CGD|CAL0000592 - symbol:orf19.5627 species:5476 "Candida ... 84 0.00041 2
UNIPROTKB|F1M8T3 - symbol:F1M8T3 "Uncharacterized protein... 80 0.00052 2
UNIPROTKB|D4ADH2 - symbol:D4ADH2 "Uncharacterized protein... 98 0.00054 2
TAIR|locus:2184362 - symbol:BTR1L "AT5G04430" species:370... 80 0.00055 2
UNIPROTKB|F1LXN9 - symbol:F1LXN9 "Uncharacterized protein... 114 0.00058 1
UNIPROTKB|F1LT74 - symbol:F1LT74 "Uncharacterized protein... 97 0.00061 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 79 0.00074 2
ZFIN|ZDB-GENE-040426-2159 - symbol:fubp1 "far upstream el... 81 0.00087 2
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 415 (151.1 bits), Expect = 6.7e-78, Sum P(2) = 6.7e-78
Identities = 92/180 (51%), Positives = 114/180 (63%)
Query: 140 GSYPSP-VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTF 198
G P P +GP+ GP Q + A+ P+ P + P G +RP GP F
Sbjct: 447 GGPPPPFMGPYPEPPPPFGPRQ---YPASPDRYHSPVGPFHERHCHGP-GFDRPP-GPGF 501
Query: 199 DRPPSPRSWTPQGVGGGDPRGF---DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLY 255
DRPPSP SWTPQ G P G D + GF RN P+ S N ++TS +E+VIPQ Y
Sbjct: 502 DRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSEN--PVMTSANVEIVIPQAY 559
Query: 256 MAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315
+ HVYGEN SNL++I+Q+SGANVVV+DPK G TEG+V+VSGTSDQ AQSL+HAFILCG
Sbjct: 560 LGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFILCG 619
Score = 392 (143.0 bits), Expect = 6.7e-78, Sum P(2) = 6.7e-78
Identities = 80/109 (73%), Positives = 88/109 (80%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
RHS AQD VMRVH+RI EIGFEP AVVARLLVHS IG LLG+GGH++SEMRRATGASI
Sbjct: 334 RHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASI 393
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
RVF KDQA + S HDEIVQVIGN +VQDALF I RLRE +FP + P
Sbjct: 394 RVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLP 442
Score = 147 (56.8 bits), Expect = 4.3e-52, Sum P(2) = 4.3e-52
Identities = 36/113 (31%), Positives = 64/113 (56%)
Query: 4 SPAQDAVMRVHSRI------AEIG---FEPGQAV-VARLLVHSQQIGCLLGRGGHIVSEM 53
S AQ A++RV RI A + + G++ + R++V Q+ L+ +GG ++ ++
Sbjct: 114 SSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKI 173
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106
R +GA +R+ DQ P C P D ++Q+ G + SV+ AL +T+ L+E+ P
Sbjct: 174 REDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAP 226
Score = 81 (33.6 bits), Expect = 3.7e-45, Sum P(2) = 3.7e-45
Identities = 27/85 (31%), Positives = 45/85 (52%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV----Q 81
+ V RLL + ++G L+G+GG +V ++ +GASI+V D P S IV +
Sbjct: 274 EEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKV--SD--PTHDSEERIIVISARE 329
Query: 82 VIGNYHSV-QDALFHITSRLRETIF 105
+ HS+ QD + + +R+ E F
Sbjct: 330 NLERRHSLAQDGVMRVHNRIVEIGF 354
Score = 76 (31.8 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 19/58 (32%), Positives = 33/58 (56%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
++V RLL + + G ++G+GG ++ ++ TG+ IRV D P P +E V +I
Sbjct: 17 ESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVI--DDIP---VPSEERVVLI 69
Score = 66 (28.3 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 23/116 (19%), Positives = 48/116 (41%)
Query: 190 ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN-RPVESG--NHAAILTSTT 246
+ G PT+D P P+ P + + P N P + G N +
Sbjct: 221 QESGAPPTWDECPFPQPGYPPEYHSME---YHPQWDHPPPNPMPEDVGPFNRPVVEEEVA 277
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
++ P + + G+ + + ++ SGA++ V+DP + E ++++S + R
Sbjct: 278 FRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLER 333
Score = 50 (22.7 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 16/42 (38%), Positives = 18/42 (42%)
Query: 177 PPNSDRIPFPYGSERPG-HG----PTFDRPPSPRSWTPQGVG 213
PP D PFP P H P +D PP P P+ VG
Sbjct: 226 PPTWDECPFPQPGYPPEYHSMEYHPQWDHPP-PNPM-PEDVG 265
Score = 46 (21.3 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 280
NR VE G + + V P Y+ + G+ +S +R+ +GA++ V
Sbjct: 347 NRIVEIGFEPSAAVVARLLVHSP--YIGRLLGKGGHLISEMRRATGASIRV 395
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 190 (71.9 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 21 GFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ-APRCGSPHDE 78
G PG VV RL+V +GCLLG+GG I+ +MR T IR+ P++ PRC S +E
Sbjct: 168 GVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEE 227
Query: 79 IVQVIGNYHSVQDALFHITSRLRET 103
IVQ++G ++V++AL ++SRLRE+
Sbjct: 228 IVQIVGELNAVKNALAIVSSRLRES 252
Score = 175 (66.7 bits), Expect = 4.3e-21, Sum P(2) = 4.3e-21
Identities = 34/101 (33%), Positives = 62/101 (61%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + ++I ++ + + RLLV S+ CL G+ G VSE+ R TG S+++
Sbjct: 386 PAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGS-VSEISRLTGTSVQIL 444
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+++ PRC S +D ++Q+ G + ++AL +T LR +F
Sbjct: 445 AREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
Score = 141 (54.7 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 28/83 (33%), Positives = 52/83 (62%)
Query: 232 PVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
PV + A ++T +T+EVV+P+ + + ++ + L+ I + SGA+V + + +P T+
Sbjct: 563 PVTTSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQN 622
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
++ +SGT +Q AQSL+ FIL
Sbjct: 623 IIRISGTPEQAERAQSLLQGFIL 645
Score = 72 (30.4 bits), Expect = 8.1e-10, Sum P(2) = 8.1e-10
Identities = 28/97 (28%), Positives = 44/97 (45%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF---PKDQAPRCGSPHDEIVQV----I 83
R+L H + G ++G+ G I+ +R+ TGA I V P D A R D + +
Sbjct: 71 RILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGD-AERIIEISDNRRRDPDGRM 129
Query: 84 GNYHSVQDALFHITSRLRETI--FPMKRPGPNNGHSY 118
++ Q+ALF + R+ E+ F P P Y
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDY 166
Score = 61 (26.5 bits), Expect = 1.4e-16, Sum P(3) = 1.4e-16
Identities = 17/66 (25%), Positives = 33/66 (50%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS---DQMRAA 304
+++ P + V GE+ + ++ G +V V+DP G+ E ++ +S D A
Sbjct: 328 QILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPDDPFFPA 387
Query: 305 Q-SLIH 309
Q +L+H
Sbjct: 388 QEALLH 393
Score = 51 (23.0 bits), Expect = 8.4e-25, Sum P(3) = 8.4e-25
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 4 SPAQDAVMRVHSRIAE 19
SPAQ+A+ VH RI E
Sbjct: 133 SPAQEALFSVHDRILE 148
Score = 48 (22.0 bits), Expect = 7.0e-09, Sum P(3) = 7.0e-09
Identities = 19/85 (22%), Positives = 41/85 (48%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ +V ++L + +I ++G I+ ++ G +RV D P GS ++I+ +
Sbjct: 323 EELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRV--SD--PVAGSD-EQIITISSE 377
Query: 86 ------YHSVQDALFHITSRLRETI 104
+ Q+AL HI +++ + I
Sbjct: 378 EAPDDPFFPAQEALLHIQTQIIDLI 402
Score = 42 (19.8 bits), Expect = 2.8e-08, Sum P(3) = 2.8e-08
Identities = 13/38 (34%), Positives = 17/38 (44%)
Query: 163 DHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDR 200
+ +A F +G P PP + YG RPG G R
Sbjct: 148 ESEAQFGYG-GP--PPEEEE---DYGGVRPGGGRVVTR 179
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 191 (72.3 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 40/111 (36%), Positives = 65/111 (58%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + +I + E V +LLV S+ IGC++G+ G I+SE+R+ T A I +
Sbjct: 378 SMAVEAVLLLQEKIND---EDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHI 434
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ P+C P+DE+V++ G +V+DAL I RLR+ + + G N
Sbjct: 435 SKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRN 485
Score = 149 (57.5 bits), Expect = 5.0e-24, Sum P(2) = 5.0e-24
Identities = 41/119 (34%), Positives = 58/119 (48%)
Query: 198 FDRPP---SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQL 254
F+R P S S P G F + N S + + STT+EV IP
Sbjct: 524 FNRRPETGSSMSMLPSSGGIYGYGSFPVGNTSYGSNSSYSSNLYGGLPQSTTMEVRIPAN 583
Query: 255 YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
+ V G NL +IR+ISGA + ++D K V ++SGTS+Q R A++L AFI+
Sbjct: 584 AVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRTAENLFQAFIM 642
Score = 111 (44.1 bits), Expect = 8.4e-15, Sum P(2) = 8.4e-15
Identities = 33/104 (31%), Positives = 52/104 (50%)
Query: 6 AQDAVMRVHSRI-AEIGFEPGQAVV-------ARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQ A+++VH I A + + RLLV S Q ++G+ G I+ +R T
Sbjct: 120 AQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSIVIGKSGSIIKNIRGRT 179
Query: 58 GASIRVFPKDQA-PR--CGSPHDEIVQVIGNYHSVQDALFHITS 98
A+++V KD + P C D IV + G SV+ ALF +++
Sbjct: 180 RANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Score = 67 (28.6 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
VV R+L S +G ++G+ G +++ +R+ T A I+V D P C
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVV--DPFPGC 86
Score = 67 (28.6 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 31/139 (22%), Positives = 51/139 (36%)
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWT---PQGVGGGDPRGFDASSGFTPRNRPVESG 236
SD +P P F + S+ PQG G F+ PV G
Sbjct: 251 SDLSIYPQAGLYPSQDSIFQHGANVSSFIGTLPQGYGENAANPVPV---FSASALPVVHG 307
Query: 237 -NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG-VVMV 294
++ I+V+ + V G+ + IRQ SG+++ VND + + V+ V
Sbjct: 308 FGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITV 367
Query: 295 SGTSDQMRAAQSLIHAFIL 313
+ T + A +L
Sbjct: 368 TATESPDDLKSMAVEAVLL 386
Score = 64 (27.6 bits), Expect = 6.2e-10, Sum P(2) = 6.2e-10
Identities = 12/43 (27%), Positives = 26/43 (60%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
G + + +++ S +IG ++G+GG + +R+A+G+ I V
Sbjct: 310 GSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEV 352
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 213 (80.0 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 45/105 (42%), Positives = 68/105 (64%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+SP +AVMR+ + ++ + + G + RLLV S +IGC+LG+GG I++EMRR T A+
Sbjct: 343 YSPTIEAVMRLQPKCSDKVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKAN 402
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
IR+ K+ P+ S DE+VQ+ G ++AL ITSRLR +F
Sbjct: 403 IRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF 447
Score = 211 (79.3 bits), Expect = 1.2e-18, Sum P(2) = 1.2e-18
Identities = 48/105 (45%), Positives = 61/105 (58%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ R+H R+ +E E + V A+LLV S QIGC+LGRGG IV +R T
Sbjct: 117 SPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSET 176
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IR+ P C DE++Q+ G V+ AL I SRL E
Sbjct: 177 GAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHE 221
Score = 64 (27.6 bits), Expect = 4.8e-19, Sum P(2) = 4.8e-19
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 184 PFP--YGSE---RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNH 238
P+P YGS G+ P + P S TP GV GG G +SSG + + N+
Sbjct: 488 PYPGGYGSSGVSAEGYSP-YGAPVGGSSSTPYGVYGGYASGRSSSSGLSSHSSTYRRRNY 546
Score = 58 (25.5 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV----NDPKPGATEG-VVMVSG 296
L S T +++P + + G+ + ++ +R+++ AN+ + N PK + + +V +SG
Sbjct: 367 LVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG 426
Query: 297 TSDQMRAA 304
D + A
Sbjct: 427 ELDVAKEA 434
Score = 52 (23.4 bits), Expect = 2.1e-17, Sum P(2) = 2.1e-17
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
G DA P +P + A T I +V P +A V G+ + ++ +RQ + A +
Sbjct: 261 GRDAGDWSRPLYQPPRNDPPA---TEFFIRLVSPVENIASVIGKGGALINQLRQETRATI 317
Query: 279 VVNDPKPGATEGVVMVS 295
V+ + + ++ +S
Sbjct: 318 KVDSSRTEGNDCLITIS 334
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 137 (53.3 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 37/104 (35%), Positives = 54/104 (51%)
Query: 5 PAQDAVMRVHSRIAE-IGFEPGQA-----VVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
P+ D ++RVH RI + + E QA V RLLV + Q G L+G+ G V ++ A+
Sbjct: 248 PSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASA 307
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+RV + P D +V+V+G SV AL I S LR+
Sbjct: 308 CIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRK 351
Score = 125 (49.1 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
Identities = 53/176 (30%), Positives = 75/176 (42%)
Query: 152 MDRGMGPSQPFDHQAAF-SHGMDPMVPPNSDRIPFPYGSERP------GHGPTFDRPPSP 204
+DR + P F++Q + MD M PP+ P P G GH P P P
Sbjct: 354 VDRSIIPF--FENQMQKPTRQMDHMPPPHQSWGP-PQGHAPSVGGGGYGHNPPPYMQPPP 410
Query: 205 R--SWTPQGVGGGDP------RGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYM 256
R S+ P P +G A P N V S + T ++ IP Y
Sbjct: 411 RHDSYYPPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAP-PMVAQQVTQQMQIPLSYA 469
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
V G + SN+S+ R++SGA V + + + E V VSGT Q++ A LI F+
Sbjct: 470 DAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
Score = 74 (31.1 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
PG+ V R+LV +Q++G ++GR G ++ ++ T A I++
Sbjct: 184 PGETVF-RMLVPAQKVGSIIGRKGDVIKKIVEETRARIKI 222
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 148 (57.2 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 44/138 (31%), Positives = 71/138 (51%)
Query: 177 PPNSDRIPFPYGSERPGHG-PTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVES 235
P +D F GS G+ P+F + S G G P G D G T P
Sbjct: 476 PARTDNCSFLSGSSNAGYTLPSFMSSMASTSGF-HGYGSF-PAG-DNVLGSTG---PYSY 529
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
G + +S+ +E++IP M+ V G+ NL +IR+ISGA + ++ K + + ++S
Sbjct: 530 GR---LPSSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLS 586
Query: 296 GTSDQMRAAQSLIHAFIL 313
GT +QMR A++L+ AF++
Sbjct: 587 GTLEQMRCAENLVQAFVM 604
Score = 141 (54.7 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 47/185 (25%), Positives = 85/185 (45%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + I + E + V +LLV S+ IGC++G+ G +++E+R+ T A+I +
Sbjct: 374 SMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICI 430
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF-------PMKRPGPNNGH 116
K + D++V+V G SV+DAL I RLRE + K P +
Sbjct: 431 -SKGKK-------DDLVEVSGEVSSVRDALIQIVLRLREDVLGDKDSVATRKPPARTDNC 482
Query: 117 SYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPFHSMDRGMGPSQPFDH-QAAFSHGMDPM 175
S+L + G F + D +G + P+ + + S ++ +
Sbjct: 483 SFLSGSSNAGYTLPSFMSSMASTSGFHG-YGSFPAGDNVLGSTGPYSYGRLPSSSALEIL 541
Query: 176 VPPNS 180
+P ++
Sbjct: 542 IPAHA 546
Score = 111 (44.1 bits), Expect = 9.1e-15, Sum P(2) = 9.1e-15
Identities = 33/104 (31%), Positives = 51/104 (49%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAV--------VARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQDA+++V+ I E RLLV Q L+G+ G + +RR T
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRT 168
Query: 58 GASIRVFPKDQA-PR--CGSPHDEIVQVIGNYHSVQDALFHITS 98
AS++V KD + P C +D +V + G SV+ ALF +++
Sbjct: 169 RASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Score = 74 (31.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP--KPGATEGVVMVSGTS--DQMRA 303
+V+ P + V G+ S + IR+ SG+ + VND K G E V++V+ T D M++
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKS 374
Score = 72 (30.4 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 16 RIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
RI+ + VV R+L +G ++G+ G +++ +R T A I+VF DQ C
Sbjct: 24 RISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF--DQLHGC 78
Score = 70 (29.7 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 20/71 (28%), Positives = 34/71 (47%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G + +V ++L I ++G+GG + +R A+G+ I V D +CG DE V
Sbjct: 305 GSSRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEV--NDSRTKCGD--DECV 360
Query: 81 QVIGNYHSVQD 91
++ S D
Sbjct: 361 IIVTATESPDD 371
Score = 54 (24.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/58 (24%), Positives = 32/58 (55%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+++++ + V G++ S ++ IR+ + AN+ ++ G + +V VSG +R A
Sbjct: 397 MQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK---GKKDDLVEVSGEVSSVRDA 451
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 133 (51.9 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 39/107 (36%), Positives = 58/107 (54%)
Query: 4 SPAQDAVMRVHSRI-AEIGFEPGQAVV--------ARLLVHSQQIGCLLGRGGHIVSEMR 54
S AQ A++RV R + + G VV +L QIG +LG GG V MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
R +GA IRV P P CG+ +DE++Q+ G+ +V+ AL ++S ++
Sbjct: 167 RNSGAMIRVLPP---PICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210
Score = 131 (51.2 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 40/115 (34%), Positives = 59/115 (51%)
Query: 2 RHSPAQDAVMRVHSRIAEI----GFEPGQ---AVV-ARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ+A+ V +R EI G PG A+V +LLV S G G E
Sbjct: 335 RYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---EA 391
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 108
ATGA + + +Q S ++ ++++ G Y VQ AL H++S+LRE + P K
Sbjct: 392 IIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKK 446
Score = 125 (49.1 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 25/67 (37%), Positives = 42/67 (62%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T+E+ + + + +YG + + + +++QISGANV V DP TE V++SG +Q R A
Sbjct: 565 TLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPT--GTEATVLISGNPEQARTAM 622
Query: 306 SLIHAFI 312
SLI + +
Sbjct: 623 SLIESIL 629
Score = 91 (37.1 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 25/79 (31%), Positives = 44/79 (55%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + + R++ H+ IG ++G G++VS++RR TG I ++P GS H +V ++
Sbjct: 22 PDETAI-RVVCHASVIGGIIGSNGYVVSKLRRETGTKIHC----ESPVNGSDH-WVVFIV 75
Query: 84 GNYHSVQDALFHITSRLRE 102
G+ Q L +T R+ E
Sbjct: 76 GSTAVNQSIL--LTDRVGE 92
Score = 63 (27.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FP-KDQAPRCGSPHDEIVQVIGN 85
VV +++ S G ++G+ G I+ ++ TGASI V P K R + +
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVSAR-ENLESR 335
Query: 86 YHSVQDALFHITSRLRET-IFPMKRPGPNNG 115
Y Q+AL + +R E + RPG +NG
Sbjct: 336 YSHAQNALALVFARSVEIDVEKGLRPGLHNG 366
Score = 52 (23.4 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 229 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 288
R+ P + GN +++ + + G+ + + ++ +GA++ V P +
Sbjct: 263 RHLPYDGGNSTE--RKVVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISVGAPLKVSG 320
Query: 289 EGVVMVS 295
E VV VS
Sbjct: 321 ERVVTVS 327
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 201 (75.8 bits), Expect = 5.7e-14, P = 5.7e-14
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 4 SPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPA +A +R+ R +E +G + A+ RLLV S QIGCL+G+GG ++SEMR T A+I
Sbjct: 328 SPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANI 387
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107
R+ K+ P+ +E+VQ+ G+ + AL + RLR F M
Sbjct: 388 RILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM 433
Score = 170 (64.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 41/111 (36%), Positives = 61/111 (54%)
Query: 5 PAQDAVMRVHSRI-AEIGFEPG----------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
PA DA+ +VH + A+ + G Q V R+LV S QIGC++G+GG ++ +
Sbjct: 112 PALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNL 171
Query: 54 RRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRLRE 102
R T A IRV KD P C HDE++ +IG V++AL+ + S L +
Sbjct: 172 RNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 221
Score = 52 (23.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 250 VIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS---DQMRAAQS 306
+ P + V G+ ++ IRQ +GA + VN + + ++ +S DQ A +
Sbjct: 274 ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFISSKEFYEDQSPAVNA 333
Query: 307 LI 308
I
Sbjct: 334 AI 335
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 155 (59.6 bits), Expect = 7.2e-11, P = 7.2e-11
Identities = 41/107 (38%), Positives = 59/107 (55%)
Query: 5 PAQDAVMRVHSRIAEIGFEP------------GQAVVA-RLLVHSQQIGCLLGRGGHIVS 51
PA DA+ +VH + F+ GQ VV R+LV S QIG L+G+GG I+
Sbjct: 37 PAFDALFKVHDMVVVEEFDDDDDYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQ 96
Query: 52 EMRRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHI 96
+R T A IRV D P C HDE++Q+IG+ +V++AL+ +
Sbjct: 97 TLRNDTNAQIRV-RNDNLPMCALALSHDELLQIIGDPSAVREALYQV 142
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 107 (42.7 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 4 SPAQDAVMRVHSRIAEI------GFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DAV+RV R++ + + +V + RLLV S Q L+G+ G ++ +
Sbjct: 134 SPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVE 193
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+GAS+R+ +++ P + + IV + G + AL I LR
Sbjct: 194 NSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLR 239
Score = 106 (42.4 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
Identities = 24/85 (28%), Positives = 46/85 (54%)
Query: 229 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 288
R+ P + +A +T + + IP Y + G +N+++IR+ SGA + + + P
Sbjct: 325 RHSPGLARVSSAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKE-SPHPD 383
Query: 289 EGVVMVSGTSDQMRAAQSLIHAFIL 313
+ V + GT+ Q++ A+ LI FI+
Sbjct: 384 QITVEIKGTTSQVQTAEQLIQEFII 408
Score = 66 (28.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
PG V R++V ++G ++GR G + +M T A I+V P +P D IV +
Sbjct: 71 PGDCVF-RMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVL---DGP-VNTP-DRIVLIS 124
Query: 84 G 84
G
Sbjct: 125 G 125
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 114 (45.2 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 32/100 (32%), Positives = 53/100 (53%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 253 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 305
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 RQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 89 (36.4 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 24/77 (31%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETI 104
SV + + I + ET+
Sbjct: 154 SVTECVKQICLVMLETL 170
Score = 79 (32.9 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 76 (31.8 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 134 (52.2 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 36/136 (26%), Positives = 66/136 (48%)
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
M PP+ R Y S + GH +R R GG G+D++S + + +
Sbjct: 287 MGPPHHRRSDDQYYSSQRGHMD--ERRHGERRGRNDRYGGSMNDGYDSNSSW---DSSYQ 341
Query: 235 SGNHAAILTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
SG ++ I +V IP+ + G+ + IR SGA++ +++P G+ + ++
Sbjct: 342 SGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRII 401
Query: 293 MVSGTSDQMRAAQSLI 308
++GT DQ++ AQ L+
Sbjct: 402 TITGTQDQIQNAQYLL 417
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R A++ V P P + I+ V +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV-PDSSGP------ERILSVSAD 93
Query: 86 YHSVQDALFHITSRLRE 102
+V + L I L E
Sbjct: 94 IPTVAEILLKIIPTLEE 110
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 106 (42.4 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 26/79 (32%), Positives = 44/79 (55%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
RLL+H GC++G+GG + E+R G ++VF + AP+ D +VQ +G V
Sbjct: 98 RLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVF-SNVAPQST---DRVVQTVGKQSQV 153
Query: 90 QDALFHITSRLRETIFPMK 108
+A+ + + R+T P+K
Sbjct: 154 IEAVREVITLTRDT--PIK 170
Score = 100 (40.3 bits), Expect = 5.6e-09, Sum P(2) = 5.6e-09
Identities = 25/99 (25%), Positives = 46/99 (46%)
Query: 213 GGGDPRGFDASSGFT--PRNRPVESGN-HAAILTSTTIEVVIPQLYMAHVYGENNSNLSH 269
G GF+A G P P + N + + +V IP+ + G+ +
Sbjct: 386 GANGAGGFNAVGGANGGPNGSPNAATNVPQGHDPNNSTQVTIPKELAGAIIGKGGGRIRR 445
Query: 270 IRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
IR S A + +++P P + + ++ +SGT Q++ AQ L+
Sbjct: 446 IRNESSAYITIDEPLPNSNDRIITISGTPKQIQMAQYLL 484
Score = 58 (25.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 70
R+L+ S G ++G+GG + +MR A++ V Q P
Sbjct: 26 RILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV-DDSQGP 64
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 110 (43.8 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 38/139 (27%), Positives = 65/139 (46%)
Query: 177 PPNSDRIPF-PYGSERP-----GHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
PP IP+ P S P G + +S P G G ++SS P
Sbjct: 174 PPKGVTIPYRPKPSSSPVIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSS---PEV 230
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
+ +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+
Sbjct: 231 KGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDR 289
Query: 291 VVMVSGTSDQMRAAQSLIH 309
V ++G++ + AQ LI+
Sbjct: 290 QVTITGSAASISLAQYLIN 308
Score = 87 (35.7 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 154 SIIECVKQICVVMLETL 170
Score = 84 (34.6 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 109 (43.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 206 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 264
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 265 KIANPVEGSTDRQVTITGSAASISLAQYLIN 295
Score = 87 (35.7 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 95
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 96 SIIECVKQICVVMLETL 112
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 129 (50.5 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 44/164 (26%), Positives = 75/164 (45%)
Query: 154 RGMGPSQPFDHQAAFSHGMD-PMVPPNSDRIPFPYGSERPGHGP---TFDRPPSPRSWTP 209
RG P P S + P+ PP P P G +R H D P+ R P
Sbjct: 265 RGPPPPPPGRGGRGGSRARNLPLPPP-----PPPRGGDRFSHQSYHSNMDDRPNDRRGRP 319
Query: 210 ----QGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTST-TIEVVIPQLYMAHVYGENN 264
+ + GG G+D +S + P G+++ I T +V IP+ + G+
Sbjct: 320 GDRYESMSGG---GYDNNSSWEPFQSGGR-GSYSDIGGPVITTQVTIPKDLAGSIIGKGG 375
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
+ IR SGA++ +++P G+ + ++ ++GT DQ++ AQ L+
Sbjct: 376 QRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 419
Score = 69 (29.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 20/77 (25%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ V +
Sbjct: 42 EMVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSVSAD 94
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 95 IDTIGEILLKIIPTLEE 111
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 101 (40.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 98 (39.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/104 (25%), Positives = 49/104 (47%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPQPQFGRRMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 115
Score = 93 (37.8 bits), Expect = 9.8e-08, Sum P(2) = 9.8e-08
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 120 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 294 VSGTSD 299
+SGT D
Sbjct: 180 ISGTPD 185
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 110 (43.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 160 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 216
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 185 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 242
Query: 217 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 243 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 301
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 302 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 340
Score = 87 (35.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 154 SIIECVKQICVVMLETL 170
Score = 84 (34.6 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 110 (43.8 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 160 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 216
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 181 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 238
Query: 217 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 239 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 297
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 298 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
Score = 84 (34.6 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 83 (34.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 75 (31.5 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 109 (43.4 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 229 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 287
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 288 KIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 84 (34.6 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 83 (34.3 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 75 (31.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 109 (43.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 221 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 279
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 280 KIANPVEGSTDRQVTITGSAASISLAQYLIN 310
Score = 83 (34.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 59 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 94
Score = 62 (26.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 10/24 (41%), Positives = 18/24 (75%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMR 54
RLL+H +++G ++G+ G V +MR
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMR 40
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 106 (42.4 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 23/75 (30%), Positives = 44/75 (58%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG+ A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V +
Sbjct: 228 SGSLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 287
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 288 TGSAASISLAQYLIN 302
Score = 86 (35.3 bits), Expect = 3.5e-08, Sum P(2) = 3.5e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGAGINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEVI 83
Score = 83 (34.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 75 (31.5 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 100 (40.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 347 AQYLIN 352
Score = 87 (35.7 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 154 SIIECVKQICVVMLETL 170
Score = 84 (34.6 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
Score = 42 (19.8 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 189 SERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 232
S+ P G T P P S +P GG R G D++S F P P
Sbjct: 171 SQSPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 214
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 100 (40.3 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 347 AQYLIN 352
Score = 87 (35.7 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 154 SIIECVKQICVVMLETL 170
Score = 84 (34.6 bits), Expect = 8.2e-08, Sum P(3) = 8.2e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
Score = 42 (19.8 bits), Expect = 4.1e-08, Sum P(3) = 4.1e-08
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 189 SERPGHGPTFDRPPSPRSWTPQGVGGGDPR---GFDASSGFTPRNRP 232
S+ P G T P P S +P GG R G D++S F P P
Sbjct: 171 SQSPPKGVTIPYRPKPSS-SPVIFAGGQDRYSTGSDSAS-F-PHTTP 214
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 109 (43.4 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 26/91 (28%), Positives = 49/91 (53%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 260 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 318
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 319 KIANPVEGSTDRQVTITGSAASISLAQYLIN 349
Score = 84 (34.6 bits), Expect = 4.1e-08, Sum P(2) = 4.1e-08
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 83 (34.3 bits), Expect = 5.2e-08, Sum P(2) = 5.2e-08
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 75 (31.5 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 101 (40.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 93 (37.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P ++ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPQLHFGRKMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 115
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 120 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 294 VSGTSD 299
+SGT D
Sbjct: 180 ISGTPD 185
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 101 (40.6 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 93 (37.8 bits), Expect = 4.4e-08, Sum P(2) = 4.4e-08
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P ++ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPQLHFGRKMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 115
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 120 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 294 VSGTSD 299
+SGT D
Sbjct: 180 ISGTPD 185
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 101 (40.6 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 244 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 303
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 304 AQYLINARLTSEVT 317
Score = 93 (37.8 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 96 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 155
Query: 294 VSGTSD 299
+SGT D
Sbjct: 156 ISGTPD 161
Score = 91 (37.1 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 25/93 (26%), Positives = 46/93 (49%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 8 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 59
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 60 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 91
Score = 85 (35.0 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 106 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 141
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 103 (41.3 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
T N +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G
Sbjct: 228 THGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 286
Query: 287 ATEGVVMVSGTSDQMRAAQSLIH 309
+T+ V ++G++ + AQ LI+
Sbjct: 287 STDRQVTITGSAASISLAQYLIN 309
Score = 87 (35.7 bits), Expect = 6.8e-08, Sum P(2) = 6.8e-08
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 154 SIIECVKQICVVMLETL 170
Score = 84 (34.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 101 (40.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 93 (37.8 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 120 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 294 VSGTSD 299
+SGT D
Sbjct: 180 ISGTPD 185
Score = 91 (37.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P ++ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPELHFGGKMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 115
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 101 (40.6 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 93 (37.8 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 120 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 179
Query: 294 VSGTSD 299
+SGT D
Sbjct: 180 ISGTPD 185
Score = 91 (37.1 bits), Expect = 7.1e-08, Sum P(2) = 7.1e-08
Identities = 26/104 (25%), Positives = 49/104 (47%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P ++ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPELHFGGKMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 115
Score = 85 (35.0 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 102 (41.0 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 27/87 (31%), Positives = 46/87 (52%)
Query: 226 FTP--RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 283
FTP + P G A+ ST E+ IP + + G + ++ IRQ+SGA + + +
Sbjct: 247 FTPLGQTTPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANA 305
Query: 284 KPGATEGVVMVSGTSDQMRAAQSLIHA 310
G++E + ++GT + AQ LI+A
Sbjct: 306 MEGSSERQITITGTPANISLAQYLINA 332
Score = 89 (36.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + EMR +TGA ++V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
Score = 86 (35.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + +R+ +GA V V D P +TE V
Sbjct: 90 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVT 149
Query: 294 VSGTSD 299
+SGT +
Sbjct: 150 ISGTPE 155
Score = 81 (33.6 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 21/74 (28%), Positives = 37/74 (50%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + IV + G ++
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GNCPERIVTITGPTDAIF 71
Query: 91 DALFHITSRLRETI 104
A I + E I
Sbjct: 72 KAFAMIAYKFEEDI 85
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 100 (40.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 223 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 282
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 283 AQYLIN 288
Score = 87 (35.7 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/77 (29%), Positives = 41/77 (53%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 79 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 134
Query: 88 SVQDALFHITSRLRETI 104
S+ + + I + ET+
Sbjct: 135 SIIECVKQICVVMLETL 151
Score = 70 (29.7 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 18/70 (25%), Positives = 35/70 (50%)
Query: 35 HSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALF 94
H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++ A
Sbjct: 2 HGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIFKAFA 54
Query: 95 HITSRLRETI 104
I +L E I
Sbjct: 55 MIIDKLEEDI 64
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 103 (41.3 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/83 (30%), Positives = 46/83 (55%)
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
T N +G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G
Sbjct: 224 THGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 282
Query: 287 ATEGVVMVSGTSDQMRAAQSLIH 309
+T+ V ++G++ + AQ LI+
Sbjct: 283 STDRQVTITGSAASISLAQYLIN 305
Score = 84 (34.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 83 (34.3 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 75 (31.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 101 (40.6 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 241 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 300
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 301 AQYLINARLTSEVT 314
Score = 93 (37.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 88 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 294 VSGTSD 299
+SGT D
Sbjct: 148 ISGTPD 153
Score = 86 (35.3 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
Score = 85 (35.0 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 101 (40.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 88 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 294 VSGTSD 299
+SGT D
Sbjct: 148 ISGTPD 153
Score = 86 (35.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
Score = 85 (35.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 101 (40.6 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 93 (37.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 88 SNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 294 VSGTSD 299
+SGT D
Sbjct: 148 ISGTPD 153
Score = 86 (35.3 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
Score = 85 (35.0 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 101 (40.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 321 AQYLINARLTSEVT 334
Score = 93 (37.8 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + IR+ +GA V V D P +TE V
Sbjct: 88 SNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVT 147
Query: 294 VSGTSD 299
+SGT D
Sbjct: 148 ISGTPD 153
Score = 85 (35.0 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 70 (29.7 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 24/94 (25%), Positives = 46/94 (48%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGG--HIVSEMRRATGASIRVFPKDQAP 70
+ S+++E G + RLL+H +++G ++G+ G H+V+ R +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKMGCLHVVT--REQSGARINISE----- 51
Query: 71 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 --GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 98 (39.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 33/104 (31%), Positives = 52/104 (50%)
Query: 217 PRGFDASSGFTPRNRPVESGNHAAI-LTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQI 273
P G + GF P + P S H + TS T E+ IP + + G S ++ IRQ+
Sbjct: 253 PLG-QTTPGF-PAHFP--SVPHIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQM 308
Query: 274 SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
SGA + + + G+ E V ++G+ + AQ LI+A + VT
Sbjct: 309 SGAQIKIANATEGSAERQVTITGSPANISLAQYLINARLSSEVT 352
Score = 92 (37.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSD 299
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D
Sbjct: 98 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 152
Score = 88 (36.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 15 SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS 74
S+++E G + RLL+H +++G ++G+ G V +MR +GA I + GS
Sbjct: 2 SKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GS 52
Query: 75 PHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+ IV + G ++ A I + E I
Sbjct: 53 CPERIVTITGPTDAIFKAFSMIALKFEEDI 82
Score = 85 (35.0 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 97 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 132
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 96 (38.9 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 26/87 (29%), Positives = 42/87 (48%)
Query: 226 FTPRNRPVESGNHAAILTSTTI--EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 283
FTP + TS T E+ IP + + G S ++ IRQ+SGA + + +
Sbjct: 221 FTPLGQTTPGFPERLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANA 280
Query: 284 KPGATEGVVMVSGTSDQMRAAQSLIHA 310
G+ E V ++G+ + AQ LI+A
Sbjct: 281 TEGSAERQVTITGSPANISLAQYLINA 307
Score = 92 (37.4 bits), Expect = 9.7e-07, Sum P(2) = 9.7e-07
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSD 299
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 88 (36.0 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 15 SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS 74
S+++E G + RLL+H +++G ++G+ G V +MR +GA I + GS
Sbjct: 3 SKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GS 53
Query: 75 PHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+ IV + G ++ A I + E I
Sbjct: 54 CPERIVTITGPTDAIFKAFSMIALKFEEDI 83
Score = 85 (35.0 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 96 (38.9 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
G T PV A +++ E+ IP + + G S ++ IRQ+SGA + + +
Sbjct: 225 GQTTPGFPVPHIGLDATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANAT 284
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
G+ E V ++G+ + AQ LI+A C
Sbjct: 285 EGSAERQVTITGSPANISLAQYLINARANC 314
Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSD 299
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPD 153
Score = 88 (36.0 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 25/90 (27%), Positives = 44/90 (48%)
Query: 15 SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS 74
S+++E G + RLL+H +++G ++G+ G V +MR +GA I + GS
Sbjct: 3 SKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GS 53
Query: 75 PHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+ IV + G ++ A I + E I
Sbjct: 54 CPERIVTITGPTDAIFKAFSMIALKFEEDI 83
Score = 85 (35.0 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 113 (44.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 30/134 (22%), Positives = 63/134 (47%)
Query: 183 IPFPYGSERPGHGPTFDRPP---SPRSWTPQ-GVGGGDPRGFDASSGFTPRNRPVESGNH 238
+P+ +G P P +P +P+ TP G G P + A PR P +
Sbjct: 327 VPYLHGQHAPA--PVAPQPMHYGAPQ--TPYAGAGPHQPTPYGAPQAAQPRGGPTPAAPV 382
Query: 239 AAILTST--TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++G
Sbjct: 383 GGAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITG 442
Query: 297 TSDQMRAAQSLIHA 310
T + + A ++++
Sbjct: 443 TQECNQMALYMLYS 456
Score = 72 (30.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV--FPKDQAPRC---GSPHDEIVQVIG 84
R ++ SQ+ ++G+GG VS++RR +GA V + + R P D + + G
Sbjct: 111 RAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 169
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 142 (55.0 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 74/300 (24%), Positives = 120/300 (40%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T +I++F + C D +V + G V
Sbjct: 151 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 206
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPF 149
+ + I + E+ P+K R P + + Y G G F
Sbjct: 207 ECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGF 264
Query: 150 HSMDRGMG--PSQPF--DHQAAFSHGMDPMVPPNSDRIPFPYGSERPGH---G------- 195
M G G P P D+ P PP D + + RPG G
Sbjct: 265 DRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRDLMAYDRRG-RPGDRYDGMVGFSAD 323
Query: 196 PTFDRPP---SPRSWT----PQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIE 248
T+D SP W PQG G D + + G R + G I+T+ +
Sbjct: 324 ETWDSAIDTWSPSEWQMAYEPQGGSGYD---YSYAGG---RGSYGDLGG--PIITT---Q 372
Query: 249 VVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ L+
Sbjct: 373 VTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLL 432
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 94 (38.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 19/67 (28%), Positives = 39/67 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G+++ + ++GT +
Sbjct: 266 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSDRQITITGTPANISL 325
Query: 304 AQSLIHA 310
AQ LI+A
Sbjct: 326 AQYLINA 332
Score = 89 (36.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + EMR +TGA ++V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
Score = 88 (36.0 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ S + +R+ +GA V V D P +TE V
Sbjct: 90 SNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDMLPNSTERAVT 149
Query: 294 VSGTSD 299
+SGT +
Sbjct: 150 ISGTPE 155
Score = 76 (31.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 21/74 (28%), Positives = 36/74 (48%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR + A I V G+ + IV + G ++
Sbjct: 19 RLLMHGKEVGSIIGKKGETVKKMREESSARINVSE-------GNCPERIVTITGPTDAIF 71
Query: 91 DALFHITSRLRETI 104
A I + E I
Sbjct: 72 KAFAMIAYKFEEDI 85
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 95 (38.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 33/118 (27%), Positives = 49/118 (41%)
Query: 191 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVV 250
R G GP S + PQ G P +A G+ P G + TT +V
Sbjct: 275 RGGPGPVPGYAMSAPGYPPQQGQFGAPN--NAGYGYGP-------GGGGPV---TTAQVT 322
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
IP + G ++ IRQ SGA + + G E ++ + GT Q+ +AQ L+
Sbjct: 323 IPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-GQPERIITIKGTEQQIHSAQYLL 379
Score = 87 (35.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
E F R+LVH G L+GR G + E+R A +++F AP GS D
Sbjct: 116 EDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFT-GCAP--GST-DR 171
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMK 108
++ G +V + + L+E P+K
Sbjct: 172 VLITSGEQKNVLGIIEEVMKELKE--IPIK 199
Score = 71 (30.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 14 HSRIAEIGF----EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
H R GF + G+ V RLLV S+ G ++G+GG + +R A ++V P
Sbjct: 33 HKRPKTDGFTEAIQQGKFEV-RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNT 90
Query: 70 PR--CGSPHDE 78
P C DE
Sbjct: 91 PERVCTVTADE 101
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 95 (38.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 33/118 (27%), Positives = 49/118 (41%)
Query: 191 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVV 250
R G GP S + PQ G P +A G+ P G + TT +V
Sbjct: 275 RGGPGPVPGYAMSAPGYPPQQGQFGAPN--NAGYGYGP-------GGGGPV---TTAQVT 322
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
IP + G ++ IRQ SGA + + G E ++ + GT Q+ +AQ L+
Sbjct: 323 IPSDLGGTIIGRGGERIARIRQESGAQITLEQSN-GQPERIITIKGTEQQIHSAQYLL 379
Score = 87 (35.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
E F R+LVH G L+GR G + E+R A +++F AP GS D
Sbjct: 116 EDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFT-GCAP--GST-DR 171
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMK 108
++ G +V + + L+E P+K
Sbjct: 172 VLITSGEQKNVLGIIEEVMKELKE--IPIK 199
Score = 71 (30.1 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 14 HSRIAEIGF----EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
H R GF + G+ V RLLV S+ G ++G+GG + +R A ++V P
Sbjct: 33 HKRPKTDGFTEAIQQGKFEV-RLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNT 90
Query: 70 PR--CGSPHDE 78
P C DE
Sbjct: 91 PERVCTVTADE 101
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 101 (40.6 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 31/95 (32%), Positives = 47/95 (49%)
Query: 223 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 220 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 278
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 316
+ GA E V ++G+ + AQ LI A+ G+
Sbjct: 279 NQAEGAGERHVTITGSPVSIALAQYLITAWAAAGL 313
Score = 90 (36.7 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
V VSG D + I A IL
Sbjct: 149 AVTVSGVPDAIILCVRQICAVIL 171
Score = 76 (31.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 72 (30.4 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 96 (38.9 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 22/83 (26%), Positives = 46/83 (55%)
Query: 228 PRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
P ++ +G A+ T + E+ IP + + G + ++ IRQ+SGA + + +P G+
Sbjct: 225 PSSQGFTAGMDASAQTGSH-ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGS 283
Query: 288 TEGVVMVSGTSDQMRAAQSLIHA 310
++ V ++G+ + A+ LI+A
Sbjct: 284 SDRQVTITGSPASISLAEYLINA 306
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V R++V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
Score = 81 (33.6 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G ++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTTAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFSMIIEKLEEDI 83
Score = 81 (33.6 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVM 293
S + A T+ +V+P + G+ + IR+ +GA V V D P +TE +
Sbjct: 88 SNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAIT 147
Query: 294 VSGT 297
++GT
Sbjct: 148 IAGT 151
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 108 (43.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 354 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 413
Query: 306 SLI 308
L+
Sbjct: 414 YLL 416
Score = 71 (30.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 50/195 (25%), Positives = 72/195 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 113 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 166
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 147
V + + I + E+ P+K R P + + Y G G
Sbjct: 167 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 224
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
F M G G +P M P P P P G R G G + R P P
Sbjct: 225 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 277
Query: 207 WTPQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 278 PPPRG---GDLMAYD 289
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 352 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 411
Query: 306 SLI 308
L+
Sbjct: 412 YLL 414
Score = 70 (29.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 174
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSY 118
V + + I + E+ P+K R P + + Y
Sbjct: 175 VVECIKIILDLISES--PIKGRAQPYDPNFY 203
Score = 67 (28.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 90
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 91 IETIGEILKKIIPTLEE 107
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLI 308
L+
Sbjct: 449 YLL 451
Score = 71 (30.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 50/195 (25%), Positives = 72/195 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 147
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 207 WTPQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 67 (28.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLI 308
L+
Sbjct: 449 YLL 451
Score = 71 (30.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 50/195 (25%), Positives = 72/195 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 147
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 207 WTPQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 67 (28.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLI 308
L+
Sbjct: 449 YLL 451
Score = 71 (30.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 50/195 (25%), Positives = 72/195 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 201
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 147
V + + I + E+ P+K R P + + Y G G
Sbjct: 202 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 259
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
F M G G +P M P P P P G R G G + R P P
Sbjct: 260 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 312
Query: 207 WTPQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 313 PPPRG---GDLMAYD 324
Score = 67 (28.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLI 308
L+
Sbjct: 413 YLL 415
Score = 70 (29.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 174
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSY 118
V + + I + E+ P+K R P + + Y
Sbjct: 175 VVECIKIILDLISES--PIKGRAQPYDPNFY 203
Score = 66 (28.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 90
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 91 TETIGEILKKIIPTLEE 107
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 108 (43.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLI 308
L+
Sbjct: 449 YLL 451
Score = 71 (30.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 48/193 (24%), Positives = 70/193 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T +I++F + C D +V + G V
Sbjct: 148 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPQSTDRVVLIGGKPDRVV 203
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPF 149
+ + I + E+ P+K R P + + Y G G F
Sbjct: 204 ECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGF 261
Query: 150 HSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRSWT 208
M G G +P M P P P P G R G G + R P P
Sbjct: 262 DRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPPPP 314
Query: 209 PQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 315 PRG---GDLMAYD 324
Score = 67 (28.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 92 (37.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + D GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI--SD-----GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
Score = 90 (36.7 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 224 SGFTPRNRPVESGNHAAILTSTTIEV--VIPQLYMAHVYGENNSNLSHIRQISGANV-VV 280
S FT + E N + T I + ++P + G++ S + IRQ +G ++ V
Sbjct: 80 SAFTLITKKFEEFNDVGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVA 139
Query: 281 NDPKPGATEGVVMVSGTSDQM 301
++ P +TE V +SG+++Q+
Sbjct: 140 SEMLPNSTERAVTLSGSAEQI 160
Score = 78 (32.5 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 18/65 (27%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN---DPKPGATEGVVMVSGTSDQMRAA 304
E+ + + + G+ + ++ IRQISGA + ++ + + G T+ + +SG D + A
Sbjct: 289 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALA 348
Query: 305 QSLIH 309
Q LI+
Sbjct: 349 QYLIN 353
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 88 (36.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 23/74 (31%), Positives = 37/74 (50%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + D GS + IV + G +
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINI--SD-----GSSPERIVTITGASEVIF 72
Query: 91 DALFHITSRLRETI 104
A I + E I
Sbjct: 73 KAFAMIAEKFEEDI 86
Score = 82 (33.9 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGT 297
T+ +V P + G+ S + IR+ +GA V V D P +TE V +SGT
Sbjct: 102 TLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDLLPDSTERAVTISGT 154
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 108 (43.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLI 308
L+
Sbjct: 413 YLL 415
Score = 68 (29.0 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 174
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSY 118
V + + I + E+ P+K R P + + Y
Sbjct: 175 VVECIKIILDLIFES--PIKGRAQPYDPNFY 203
Score = 66 (28.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 90
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 91 TETIGEILKKIIPTLEE 107
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 108 (43.1 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLI 308
L+
Sbjct: 413 YLL 415
Score = 68 (29.0 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + E+R T +I++F + C PH D +V + G
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 174
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSY 118
V + + I + E+ P+K R P + + Y
Sbjct: 175 VVECIKIILDLIFES--PIKGRAQPYDPNFY 203
Score = 66 (28.3 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 38 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 90
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 91 TETIGEILKKIIPTLEE 107
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 108 (43.1 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 325 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 384
Query: 306 SLI 308
L+
Sbjct: 385 YLL 387
Score = 67 (28.6 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 15 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 67
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 68 IETIGEILKKIIPTLEE 84
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 108 (43.1 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLI 308
L+
Sbjct: 425 YLL 427
Score = 67 (28.6 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + +R AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
Score = 56 (24.8 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 48/195 (24%), Positives = 70/195 (35%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+H G ++G G + + T +I++F + C PH D +V + G
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE-----C-CPHSTDRVVLIGGKPDR 177
Query: 89 VQDALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVG 147
V + + I + E+ P+K R P + + Y G G
Sbjct: 178 VVECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRG 235
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
F M G G +P M P P P P G R G G + R P P
Sbjct: 236 GFDRMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPP 288
Query: 207 WTPQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 289 PPPRG---GDLMAYD 300
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 84 (34.6 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 8.8e-06, Sum P(2) = 8.8e-06
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 87 (35.7 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSD 299
V VSG D
Sbjct: 149 AVTVSGVPD 157
Score = 72 (30.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 95 (38.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 223 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 220 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 278
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ GA E V ++G+ + AQ LI A
Sbjct: 279 NQAEGAGERHVTITGSPVSIALAQYLITA 307
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
V VSG D + I A IL
Sbjct: 149 AVTVSGVPDAIILCVRQICAVIL 171
Score = 76 (31.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 72 (30.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 95 (38.5 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
V +G TS+ E ++P + V G S +S IRQ+SGA++ + + GA E V
Sbjct: 232 VPAGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 290
Query: 293 MVSGTSDQMRAAQSLIHA 310
++G+ + AQ LI A
Sbjct: 291 TITGSPVSIALAQYLITA 308
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
V VSG D + I A IL
Sbjct: 149 AVTVSGVPDAIILCVRQICAVIL 171
Score = 76 (31.8 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 72 (30.4 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 93 (37.8 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 17/63 (26%), Positives = 36/63 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V I + + G+ + +R SGA++ +++P G+ + V+ ++GT DQ++ A
Sbjct: 365 TTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAP 424
Query: 306 SLI 308
L+
Sbjct: 425 YLL 427
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 49/193 (25%), Positives = 71/193 (36%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T +I++F + C P D +V + G V
Sbjct: 124 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQEC----CPHPTDRVVLIGGKPDRVV 179
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPF 149
+ + I + E+ P+K R P + + Y G G F
Sbjct: 180 ECIKIILDLISES--PIKGRAQPYDPNFYDETYDYGGFTMMFDDRRGRPVGFPMRGRGGF 237
Query: 150 HSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRSWT 208
M G G +P M P P P P G R G G + R P P
Sbjct: 238 DKMPPGRG-GRPMPPSRRDYDDMSPRRGPP----PPPPG--RGGRGGSRARNLPLPPPPP 290
Query: 209 PQGVGGGDPRGFD 221
P+G GD +D
Sbjct: 291 PRG---GDLMAYD 300
Score = 62 (26.9 bits), Expect = 0.00084, Sum P(2) = 0.00084
Identities = 18/77 (23%), Positives = 35/77 (45%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ V R+L+ S+ G ++G+GG + + AS+ V P P + I+ + +
Sbjct: 41 EMVELRILLQSKNAGAVIGKGGKNIKALHTDYNASVSV-PDSSGP------ERILSISAD 93
Query: 86 YHSVQDALFHITSRLRE 102
++ + L I L E
Sbjct: 94 IETIGEILKKIIPTLEE 110
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 94 (38.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
V G + TS+ E ++P + V G S +S IRQ+SGA++ + + GA E V
Sbjct: 231 VVPGMDPSTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHV 289
Query: 293 MVSGTSDQMRAAQSLIHA 310
++G+ + AQ LI A
Sbjct: 290 TITGSPVSIALAQYLITA 307
Score = 87 (35.7 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 76 (31.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 74 (31.1 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 26/99 (26%), Positives = 45/99 (45%)
Query: 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
E G E + R+L+H +++G ++G+ G V +R + A I + GS +
Sbjct: 9 EEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPER 61
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
I + G+ +V A+ I +L E + P NG S
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLCA----APANGGS 96
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 106 (42.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 31/100 (31%), Positives = 52/100 (52%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G D+SS P G A++ T TT E+ IP + + G +N++ I
Sbjct: 13 GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQGANINEI 65
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
RQ+S A + + +P G++ V ++G++ + AQ LI+A
Sbjct: 66 RQMSRAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 105
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 91 (37.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/69 (34%), Positives = 35/69 (50%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ S + IR+ +GA V V D P +TE V +SG+ D +
Sbjct: 112 TLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGDLLPNSTERGVTISGSQDAIIQC 171
Query: 305 QSLIHAFIL 313
LI IL
Sbjct: 172 VKLICTVIL 180
Score = 82 (33.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+GG + E+R TGA ++V
Sbjct: 111 VTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQV 146
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 27/102 (26%), Positives = 48/102 (47%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
P D+ +R++ + G + G V RLL+H +++G ++G+ G V +R + A I
Sbjct: 4 PGPDSHVRMNCE-QDFG-DGGMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARIN 61
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+ GS + I+ + G V A IT +L E +
Sbjct: 62 ISE-------GSCPERIITITGATECVFRAFTMITIKLEEDL 96
Score = 79 (32.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E++IP + + G + ++ IRQ+SGA + + ++ V ++G+ + AQ L
Sbjct: 283 ELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGSQLDSTSDRHVTITGSPISINLAQYL 342
Query: 308 I 308
I
Sbjct: 343 I 343
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 93 (37.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHA 310
I A
Sbjct: 305 ITA 307
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
V VSG D + I A IL
Sbjct: 149 AVTVSGVPDAIILCVRQICAVIL 171
Score = 76 (31.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 72 (30.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 93 (37.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHA 310
I A
Sbjct: 305 ITA 307
Score = 90 (36.7 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 27/83 (32%), Positives = 38/83 (45%)
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEG 290
P GN + T+ +VIP + G+ + + IR+ +GA V V D P +TE
Sbjct: 91 PANGGNVSR--PPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTER 148
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
V VSG D + I A IL
Sbjct: 149 AVTVSGVPDAIILCVRQICAVIL 171
Score = 76 (31.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 72 (30.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 21/83 (25%), Positives = 39/83 (46%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPN 113
A+ I +L E + G N
Sbjct: 74 HAVSMIAFKLDEDLCAAPANGGN 96
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 93 (37.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHA 310
I A
Sbjct: 305 ITA 307
Score = 87 (35.7 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 24/69 (34%), Positives = 34/69 (49%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 76 (31.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 71 (30.1 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H +++G ++G+ G V +R + A I + GS + I + G+ +V
Sbjct: 21 RMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTAAVF 73
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHS 117
A+ I +L E + P NG S
Sbjct: 74 HAVSMIAFKLDEDLCA----APANGGS 96
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 84 (34.6 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 124 (48.7 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 31/94 (32%), Positives = 50/94 (53%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 386 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 445
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 446 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 479
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 92 (37.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 19/69 (27%), Positives = 38/69 (55%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ V++P + G+ S + IR+ +GA++ V ++ P +TE V +SGT+D +
Sbjct: 154 TMRVIVPATQCGSLIGKGGSKIKDIREATGASIQVASEMLPHSTERAVTLSGTADAINLC 213
Query: 305 QSLIHAFIL 313
+ + +L
Sbjct: 214 MTQVCQILL 222
Score = 72 (30.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 21/84 (25%), Positives = 40/84 (47%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ +++G ++G+ G + ++R +GA I + D GS + IV + G +
Sbjct: 75 RLLMQGKEVGSIIGKKGDQIKKIREESGAKINI--SD-----GSCPERIVTITGTLGVIG 127
Query: 91 DALFHITSRLRET--IFPMKRPGP 112
A + ++ E + P P P
Sbjct: 128 KAFNMVCNKFEEDMLLLPNSVPKP 151
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 84 (34.6 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
Score = 75 (31.5 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +GA V V D P +TE + ++G
Sbjct: 92 AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG 150
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 95 (38.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 30/89 (33%), Positives = 44/89 (49%)
Query: 223 SSGFTPRNRP-VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
SS P P V G TS+ E ++P + V G S +S IRQ+SGA++ +
Sbjct: 60 SSHAVPFATPSVVPGLDPGTQTSSQ-EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIG 118
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ GA E V ++G+ + AQ LI A
Sbjct: 119 NQAEGAGERHVTITGSPVSIALAQYLITA 147
Score = 58 (25.5 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
V RL++ + Q G L+G+ G + E+R T
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVT 54
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 96 (38.9 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 18/73 (24%), Positives = 43/73 (58%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
GNH ++ E+ I + ++ +V G++ +++ +++ +G ++++ DP G++E + +
Sbjct: 323 GNHL-LMNFVQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSIIIQDPVEGSSERRLTIR 381
Query: 296 GTSDQMRAAQSLI 308
GT +AA LI
Sbjct: 382 GTFMASQAAIMLI 394
Score = 64 (27.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/106 (24%), Positives = 47/106 (44%)
Query: 11 MRVHSRIAEIGFEP-GQ--AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
M V + + E G E G+ + LL+ +GC++G+ G + E+ + A + P
Sbjct: 129 MIVRALLEEHGNEDNGEDIEISINLLIPHHLMGCIIGKRGSRLREIEDLSAAKLFASPNQ 188
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+D I+ + G ++ A F+I+ L F M+ P N
Sbjct: 189 LL----LSNDRILTINGVPDAIHIATFYISQTLLN--FQMESPQKN 228
>UNIPROTKB|H3BSS4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 PRIDE:H3BSS4 Ensembl:ENST00000547859
Uniprot:H3BSS4
Length = 184
Score = 110 (43.8 bits), Expect = 0.00025, P = 0.00025
Identities = 42/159 (26%), Positives = 71/159 (44%)
Query: 160 QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG---VGGGD 216
+P F+ G D SD FP+ + P + PP ++T QG + D
Sbjct: 16 KPSSSPVIFAGGQD-RYSTGSDSASFPHTTPSMCLNPDLEGPPL-EAYTIQGQYAIPQPD 73
Query: 217 PRGFDA----SSGF--TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHI 270
S F T N +G A+ T T+ E+ IP + + G + ++ I
Sbjct: 74 LTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEI 132
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
RQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 133 RQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 171
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 84 (34.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 18/80 (22%), Positives = 39/80 (48%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
N + H + TT + P + + G+ S + +R++SGA + +++ G E
Sbjct: 272 NNNNNNNTHGSGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAISEAIEGENE 331
Query: 290 GVVMVSGTSDQMRAAQSLIH 309
V ++G+S + A+ +I+
Sbjct: 332 RVFTITGSSHAVDKAKQMIY 351
Score = 73 (30.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 20/70 (28%), Positives = 32/70 (45%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+LV +++ GCL+G G ++ +R T + P GS H+ I+ V G
Sbjct: 73 RVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGI--SRLIP--GS-HERILTVSGKLDDCA 127
Query: 91 DALFHITSRL 100
AL + L
Sbjct: 128 KALSYFAQAL 137
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 80 (33.2 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/33 (39%), Positives = 24/33 (72%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
RLL+H +++G ++G+ G V +MR+ +GA I +
Sbjct: 7 RLLMHGKEVGSIIGKDGESVKKMRKESGARISI 39
Score = 69 (29.3 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSG 296
AA T+ +V+P + G+ + IR+ +G V V D P +TE + ++G
Sbjct: 80 AASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDMLPNSTERAITIAG 138
>UNIPROTKB|D4ADH2 [details] [associations]
symbol:D4ADH2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 OrthoDB:EOG46WZ8K IPI:IPI00197192
PRIDE:D4ADH2 Ensembl:ENSRNOT00000026359 OMA:IFHICAV Uniprot:D4ADH2
Length = 311
Score = 98 (39.6 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ +P + + G ++ ++ IRQ+SGA + +P G+T+ V ++G + +
Sbjct: 233 TTSHELTLPNDLIGCIIGRQDAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISL 292
Query: 304 AQSLIHA 310
AQ LI+A
Sbjct: 293 AQYLINA 299
Score = 54 (24.1 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 33 LVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
+V + Q G L+G+G + E+R +TGA ++
Sbjct: 99 VVPASQCGSLIGKGK--IKEIRESTGAQVQ 126
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 80 (33.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 25/95 (26%), Positives = 47/95 (49%)
Query: 222 ASSGFTPRN-RPVESG----NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
A++G+ N P SG NH STT+ + + ++ V G N+ I Q++GA
Sbjct: 228 ATAGYNSVNYAPNGSGGKYQNHKEE-ASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGA 286
Query: 277 NVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLI 308
+ ++D G T+ V ++G ++ A+++I
Sbjct: 287 RIKISDRGDFMSGTTDRKVSITGPQRAIQQAETMI 321
Score = 75 (31.5 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 12 RVHSRI-AEIG--FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
++HS + AE G EP + + RL+V + G ++G+GG + + A I++ P D
Sbjct: 104 KLHSELHAEDGNEVEPRRRI--RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDN 161
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
S D +V + G + A+ I ++L E
Sbjct: 162 TFYGLS--DRLVTLSGTFEEQMRAIDLILAKLTE 193
Score = 74 (31.1 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 20/74 (27%), Positives = 39/74 (52%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R LV + G ++G+GG ++E + +GA I++ ++Q G+ D I+ + G+ V
Sbjct: 38 RFLVSNAAAGSVIGKGGSTITEFQAKSGARIQL-SRNQEFFPGTT-DRIIMISGSIKEVV 95
Query: 91 DALFHITSRLRETI 104
+ L I +L +
Sbjct: 96 NGLELILDKLHSEL 109
>UNIPROTKB|F1LXN9 [details] [associations]
symbol:F1LXN9 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 IPI:IPI00777906
Ensembl:ENSRNOT00000017403 Uniprot:F1LXN9
Length = 376
Score = 114 (45.2 bits), Expect = 0.00058, P = 0.00058
Identities = 63/281 (22%), Positives = 104/281 (37%)
Query: 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
LL+ G ++G G V E+R T +++ F + C D +V + G V +
Sbjct: 96 LLIQQSLAGGIIGVKGAKVKELRENTQTTVKRFQE----WCPHSTDRVVLIGGKPDRVVE 151
Query: 92 ALFHITSRLRETIFPMK-RPGPNNGHSYLXXXXXXXXXXXXXXXXXXXXGSYPSPVGPFH 150
+ I + E+ P+K R P + + Y G G
Sbjct: 152 CIKIIPDLVSES--PIKGRAQPYDPNFYDETYDCGGFTMMFDDRQGRPEGFPMRGRGGLD 209
Query: 151 SMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGP-TFDRPPSPRSWTP 209
M G G +P M P P P G +R + PP PR
Sbjct: 210 RMPPGQG-GRPMPPSRRDYDDMSPCRGPPPP--PLGRGGQRGSRANLSLPPPPPPRGGNL 266
Query: 210 QGVGG-GDPRG-FDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
G P +D G R + H I+T+ ++ IP+ + GE +
Sbjct: 267 MACDRRGQPGDRYDGVVGVGGRGSYSDLDRH--IITT---QITIPKDLTGSIIGEGGQRI 321
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
I SGA++ D G+ + +++++GT DQ++ AQ L+
Sbjct: 322 KQICHESGASIKT-DELEGSEDRIIIITGTQDQIQNAQYLL 361
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 97 (39.2 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ +P + + G + ++ IRQ+SGA + +P G+T+ V ++G + +
Sbjct: 244 TTSHELTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGPAASISL 303
Query: 304 AQSLIHA 310
AQ LI+A
Sbjct: 304 AQYLINA 310
Score = 55 (24.4 bits), Expect = 0.00061, Sum P(2) = 0.00061
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 33 LVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
+V + Q G L+G+G + E+R +TGA ++
Sbjct: 102 VVPASQCGSLIGKG--TIKEIRESTGAQVQ 129
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 79 (32.9 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 27/96 (28%), Positives = 42/96 (43%)
Query: 23 EPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQ 81
E QA + R +V S++ G ++G+GG V+++R TG V Q HD ++
Sbjct: 40 EYAQAQLTVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSKVVQGV-----HDRVLT 94
Query: 82 VIGNYHSVQDALFHITSRLRETIFPMKRPG--PNNG 115
+ G + A + L E M G NNG
Sbjct: 95 ITGGCEGISKAYAVVARALLEGAPSMGMGGVVSNNG 130
Score = 76 (31.8 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVMVSGTSDQMRAA 304
I+++I M + G + HI+ +SG +V + P +TE VV V GT + ++ A
Sbjct: 134 IKLLISHNQMGTIIGRQGLKIKHIQDVSGVRMVAQKEMLPQSTERVVEVQGTPEGIQRA 192
>ZFIN|ZDB-GENE-040426-2159 [details] [associations]
symbol:fubp1 "far upstream element (FUSE) binding
protein 1" species:7955 "Danio rerio" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-2159 GO:GO:0003723 CTD:8880 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 OrthoDB:EOG4STS4G
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
OMA:NGQEGDQ EMBL:CT027589 EMBL:BC064649 IPI:IPI00484709
RefSeq:NP_998309.1 UniGene:Dr.76240 SMR:Q6P2A9
Ensembl:ENSDART00000081442 Ensembl:ENSDART00000128153 GeneID:406418
KEGG:dre:406418 InParanoid:Q6P2A9 NextBio:20818020 Uniprot:Q6P2A9
Length = 642
Score = 81 (33.6 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 25/94 (26%), Positives = 42/94 (44%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P ++V V +G ++GRGG +S +++ +G I++ AP G D V +
Sbjct: 86 PPRSVSEEFKVPDGMVGFIIGRGGEQISRLQQESGCKIQI-----APDSGGMPDRSVTLT 140
Query: 84 GNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
G+ ++ A RL I RP P H+
Sbjct: 141 GSPDAIMTA-----KRLLSEIVEKGRPSPAFHHN 169
Score = 79 (32.9 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 30/75 (40%), Positives = 32/75 (42%)
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMD-PMVPPN--SDRIPFPYGSERPG-HGPTFDRPP 202
GP M GP P H SHG P PP P PYG PG HGP P
Sbjct: 447 GPVSPMGGPHGPPGP--HGGP-SHGPPGPQGPPAPMGPYNPGPYGQGPPGPHGP-----P 498
Query: 203 SPRSWTPQGVGGGDP 217
+P + PQG G G P
Sbjct: 499 AP--YQPQGWGNGYP 511
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.420 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 318 298 0.00094 115 3 11 22 0.40 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 92
No. of states in DFA: 599 (64 KB)
Total size of DFA: 203 KB (2112 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.25u 0.16s 25.41t Elapsed: 00:00:01
Total cpu time: 25.27u 0.16s 25.43t Elapsed: 00:00:01
Start: Fri May 10 22:07:25 2013 End: Fri May 10 22:07:26 2013