BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021032
(318 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147863214|emb|CAN78372.1| hypothetical protein VITISV_006585 [Vitis vinifera]
Length = 807
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/315 (66%), Positives = 248/315 (78%), Gaps = 4/315 (1%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
+HSPAQDAV+RVH RIAEIGFEPG AVVARLLVHSQQIGCLLG+GG I+SEMRRATGASI
Sbjct: 487 KHSPAQDAVIRVHCRIAEIGFEPGAAVVARLLVHSQQIGCLLGKGGIIISEMRRATGASI 546
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN-NGHSYLP 120
R+F K+Q P+CGS +DE+VQVIG+ SVQDALF ITSR+RETIFP+K N NG Y+
Sbjct: 547 RIFAKEQVPKCGSQNDELVQVIGSLQSVQDALFCITSRIRETIFPLKPSISNVNGPPYMS 606
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
FPE+PPP FRPRH+PASPG Y SPVG H +DR P P DHQ++FSHG+D + P N
Sbjct: 607 SFPEIPPPMFRPRHDPASPGHYSSPVGVPHGIDRSAVPGHPLDHQSSFSHGVDRIGPSNL 666
Query: 181 DRIPFPYGSERPGHGPTFDRP-PSPRSWTPQGVGGGDPRGFDA-SSGFTPRNRPVESGNH 238
DR P+PYG +RPGHGP FDRP SPR WTPQGV G+ RG D S G R+ P SG+
Sbjct: 667 DRAPYPYGGDRPGHGPPFDRPSSSPRMWTPQGV-SGNLRGTDVGSGGLASRSGPPGSGSQ 725
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
A +T TT+EV +PQ ++HVYGENNSNL+ IRQISGA VV+ DP+ G++EGVV+VSGT
Sbjct: 726 APNITXTTVEVAVPQALLSHVYGENNSNLNQIRQISGARVVIQDPRTGSSEGVVVVSGTP 785
Query: 299 DQMRAAQSLIHAFIL 313
DQ RAAQSL+ AFIL
Sbjct: 786 DQTRAAQSLVQAFIL 800
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/88 (47%), Positives = 55/88 (62%), Gaps = 10/88 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------AVVARLLVHSQQIGCLLGRGGHIVSEM 53
SPAQ A++RV RI ++ E + AV RLL S Q+GC+LGRGG IV ++
Sbjct: 149 SPAQQALVRVFERILKVDEEREEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKI 208
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQ 81
R+ +GA IRV PKD P C SP DE++Q
Sbjct: 209 RQESGAQIRVLPKDHIPACASPGDELIQ 236
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 18/92 (19%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ VV +LL H +++G L+G+GG I+ ++ TGASI++ D AP DE V VI
Sbjct: 422 EEVVFKLLCHFEKVGSLIGKGGSIIRXLQSETGASIKI--ADAAP----DSDERVVVISA 475
Query: 86 YHSV------------QDALFHITSRLRETIF 105
+ QDA+ + R+ E F
Sbjct: 476 REACTLTNXEQKHSPAQDAVIRVHCRIAEIGF 507
>gi|225443339|ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product [Vitis vinifera]
Length = 704
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/315 (66%), Positives = 248/315 (78%), Gaps = 5/315 (1%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
+HSPAQDAV+RVH RIAEIGFEPG AVVARLLVHSQQIGCLLG+GG I+SEMRRATGASI
Sbjct: 386 KHSPAQDAVIRVHCRIAEIGFEPGAAVVARLLVHSQQIGCLLGKGGIIISEMRRATGASI 445
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN-NGHSYLP 120
R+F K+Q P+CGS +DE+VQVIG+ SVQDALF ITSR+RETIFP+K N NG Y+
Sbjct: 446 RIFAKEQVPKCGSQNDELVQVIGSLQSVQDALFRITSRIRETIFPLKPSISNVNGPPYMS 505
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
FPE+PPP FRPRH+PASPG Y SPVG H +DR P P DHQ++FSHG+D + P N
Sbjct: 506 SFPEIPPPMFRPRHDPASPGHYSSPVGVPHGIDRSAVPGHPLDHQSSFSHGVDRIGPSNL 565
Query: 181 DRIPFPYGSERPGHGPTFDRP-PSPRSWTPQGVGGGDPRGFDASSG-FTPRNRPVESGNH 238
DR P+PYG +RPGHGP FDRP SPR WT QGV G+ RG D SG RN P SG+
Sbjct: 566 DRAPYPYGGDRPGHGPPFDRPSSSPRMWT-QGV-SGNLRGTDVGSGSLASRNGPPGSGSQ 623
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
A +T+TT+EV +PQ ++HVYGENNSNL+ IRQISGA VV+ DP+ G++EGVV+VSGT
Sbjct: 624 APNITTTTVEVAVPQALLSHVYGENNSNLNQIRQISGARVVIQDPRTGSSEGVVVVSGTP 683
Query: 299 DQMRAAQSLIHAFIL 313
DQ RAAQSL+ AFIL
Sbjct: 684 DQTRAAQSLVQAFIL 698
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 10/110 (9%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------AVVARLLVHSQQIGCLLGRGGHIVSEM 53
SPAQ A++RV RI ++ E + AV RLL S Q+GC+LGRGG IV ++
Sbjct: 149 SPAQQALVRVFERILKVDEEREEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKI 208
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
R+ +GA IRV PKD P C SP DE++Q+ G + +V+ AL ++S L++
Sbjct: 209 RQESGAQIRVLPKDHIPACASPGDELIQITGTFPAVRKALLLVSSCLQDN 258
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 13/87 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ VV +LL H +++G L+G+GG I+ ++ TGASI++ D AP DE V VI
Sbjct: 326 EEVVFKLLCHFEKVGSLIGKGGSIIRFLQSETGASIKI--ADAAP----DSDERVVVISA 379
Query: 86 YHSV-------QDALFHITSRLRETIF 105
++ QDA+ + R+ E F
Sbjct: 380 RENLEQKHSPAQDAVIRVHCRIAEIGF 406
>gi|449448150|ref|XP_004141829.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/317 (55%), Positives = 220/317 (69%), Gaps = 6/317 (1%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
+SPAQ+AV+R H RIAEIG+EPG AVVARLLVH QQIG L+GRGGHI+++MRR TG SI+
Sbjct: 402 YSPAQEAVIRAHCRIAEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQ 461
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK--RPGPNNGHSYLP 120
+FP+DQ G DE+VQVIGN SVQDALFHIT+R+R+T FPM+ P NN YL
Sbjct: 462 IFPRDQIQNGGPMSDEVVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVPNFNNHPPYLS 521
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
P PE PPP FRP N SPG YPS G +R S P DHQ A+ H + N
Sbjct: 522 PHPETPPPLFRPGSNAHSPGYYPSQAGGLRGTERPPYHSHPLDHQPAYPHNVSFGGGNNM 581
Query: 181 DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA 240
D +P+P+G ERPG G +F+R PSPRSWT Q V P+G G RN P SG
Sbjct: 582 DGVPYPHGMERPGPG-SFER-PSPRSWTSQ-VSSEIPKGPTDGFGMVSRNEPYGSGG-PH 637
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ T++E+VIPQ + H+YGENN+N++H++QISGA +VV+D KPG +G V++SGT DQ
Sbjct: 638 FMGGTSMEMVIPQTLICHIYGENNNNIAHVQQISGAMLVVHDAKPGMFDGKVIMSGTPDQ 697
Query: 301 MRAAQSLIHAFILCGVT 317
+RAAQ L+HAFILCG T
Sbjct: 698 IRAAQRLVHAFILCGKT 714
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G E VV RLL S Q+G +LGRGG V ++R+ + A +++FPKDQ P C SP DE++
Sbjct: 192 GGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELI 251
Query: 81 QVIGNYHSVQDALFHITSRLRET 103
Q+ GN+ +V AL ++S L+++
Sbjct: 252 QISGNFSAVMKALSSVSSCLQDS 274
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK---DQAPRCGSPHDEIVQV 82
+ VV RLL ++G L+G+GG +V ++ TGASI++ D+ S + + Q
Sbjct: 342 EDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDTPDLDERLVVISARETLEQT 401
Query: 83 IGNYHSVQDALFHITSRLRE 102
Y Q+A+ R+ E
Sbjct: 402 ---YSPAQEAVIRAHCRIAE 418
>gi|449492545|ref|XP_004159029.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 716
Score = 322 bits (826), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 177/317 (55%), Positives = 220/317 (69%), Gaps = 6/317 (1%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
+SPAQ+AV+R H RIAEIG+EPG AVVARLLVH QQIG L+GRGGHI+++MRR TG SI+
Sbjct: 402 YSPAQEAVIRAHCRIAEIGYEPGAAVVARLLVHGQQIGYLVGRGGHIINDMRRGTGTSIQ 461
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK--RPGPNNGHSYLP 120
+FP+DQ G DE+VQVIGN SVQDALFHIT+R+R+T FPM+ P NN YL
Sbjct: 462 IFPRDQIQNGGPMSDEVVQVIGNLPSVQDALFHITNRIRDTFFPMRPHVPNFNNHPPYLS 521
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
P PE PPP FRP N SPG YPS G +R S P DHQ A+ H + N
Sbjct: 522 PHPETPPPLFRPGSNAHSPGYYPSQAGGLRGTERPPYHSHPLDHQPAYPHNVSFGGGNNM 581
Query: 181 DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA 240
D +P+P+G ERPG G +F+R PSPRSWT Q V P+G G RN P SG
Sbjct: 582 DGVPYPHGMERPGPG-SFER-PSPRSWTSQ-VSSEIPKGPTDGFGMVSRNEPYGSGG-PH 637
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ T++E+VIPQ + H+YGENN+N++H++QISGA +VV+D KPG +G V++SGT DQ
Sbjct: 638 FMGGTSMEMVIPQTLICHIYGENNNNIAHVQQISGAMLVVHDAKPGMFDGKVIMSGTPDQ 697
Query: 301 MRAAQSLIHAFILCGVT 317
+RAAQ L+HAFILCG T
Sbjct: 698 IRAAQRLVHAFILCGKT 714
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 37/83 (44%), Positives = 56/83 (67%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G E VV RLL S Q+G +LGRGG V ++R+ + A +++FPKDQ P C SP DE++
Sbjct: 192 GGETDGLVVCRLLAPSHQVGRVLGRGGKTVEKIRQESMAHVKIFPKDQNPACASPQDELI 251
Query: 81 QVIGNYHSVQDALFHITSRLRET 103
Q+ GN+ +V AL ++S L+++
Sbjct: 252 QISGNFSAVMKALSSVSSCLQDS 274
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK---DQAPRCGSPHDEIVQV 82
+ VV RLL ++G L+G+GG +V ++ TGASI++ D+ S + + Q
Sbjct: 342 EDVVFRLLCQPDKVGSLIGKGGTVVRALQNETGASIKIVDTPDLDERLVVISARETLEQT 401
Query: 83 IGNYHSVQDALFHITSRLRE 102
Y Q+A+ R+ E
Sbjct: 402 ---YSPAQEAVIRAHCRIAE 418
>gi|356526304|ref|XP_003531758.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Glycine
max]
Length = 565
Score = 300 bits (769), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 180/318 (56%), Positives = 219/318 (68%), Gaps = 14/318 (4%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
+HSPAQ+AV+RVH R+ EIGFEP AVVA+LLV S Q+GCLLG+GG ++SEMRRATGASI
Sbjct: 258 KHSPAQEAVIRVHCRLTEIGFEPSAAVVAKLLVRSPQVGCLLGKGGLVISEMRRATGASI 317
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+F K+Q S ++E+VQVIG+ SVQDALFHIT+R+RETIFP++ P + + PP
Sbjct: 318 RIFSKEQIKYI-SQNEEVVQVIGSLQSVQDALFHITNRIRETIFPIRTPPNFSAPPHFPP 376
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPNS 180
FPEMPPP FRPR++ S G +P P H D P P DHQ AF HGM PPN
Sbjct: 377 FPEMPPPLFRPRNHLMSSG-HPPPPQVGHPHDHSTVPPMPVDHQQHAFVHGMGRG-PPNM 434
Query: 181 DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR-PVESGNHA 239
DR+P+P G ++ P SPRSW P V G+P G +S T RN PV++GN
Sbjct: 435 DRVPYPRG---------YEGPNSPRSWNPLAVDRGNPGGTADTSSLTSRNETPVKNGNPL 485
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
S TIE+ IP +Y+ HVYGENNSNL+ IRQ SGANV V+D KPGATEG+V+VSG D
Sbjct: 486 QNPNSLTIEITIPYMYLTHVYGENNSNLTQIRQTSGANVAVHDSKPGATEGLVIVSGAPD 545
Query: 300 QMRAAQSLIHAFILCGVT 317
Q AAQ LI FILCG T
Sbjct: 546 QTHAAQCLIQGFILCGQT 563
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 70/119 (58%), Gaps = 5/119 (4%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S AQ A++RV R + + V +L+ S Q+GC+LGRGG IV ++R+ +GA IR
Sbjct: 62 ESAAQVALIRVLERTMDEETK-NSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDSGAHIR 120
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
V PKDQ P DE +Q+ GN+ +V+ A+ +++ L E + + P+ G SY PP
Sbjct: 121 VLPKDQPPPPPG--DEFIQITGNFGAVKKAVLSVSACLHENNYGAFK--PSGGGSYAPP 175
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+ VV +LL ++G L+G+GG +V ++ TGASI++ G DE V VI
Sbjct: 198 EEVVFKLLCRHDKVGSLIGKGGSVVRALQNETGASIQIV------EAGPDSDERVVVISA 251
Query: 86 YHS-------VQDALFHITSRLRETIF 105
+ Q+A+ + RL E F
Sbjct: 252 QETSEQKHSPAQEAVIRVHCRLTEIGF 278
>gi|356522258|ref|XP_003529764.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 559
Score = 300 bits (767), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 183/319 (57%), Positives = 221/319 (69%), Gaps = 16/319 (5%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
+HSPAQ+AV+RVH R+ EIGFEP AVVA+LLV S Q+GCLLG+GG ++SEMRR TGASI
Sbjct: 252 KHSPAQEAVIRVHCRLTEIGFEPSAAVVAKLLVRSPQVGCLLGKGGLVISEMRRVTGASI 311
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+F K+Q S ++E+VQVIG+ SVQDALFHITSR+RETIFP++ P + +LPP
Sbjct: 312 RIFSKEQIKYI-SQNEEVVQVIGSLQSVQDALFHITSRIRETIFPIRTPPNFSAPPHLPP 370
Query: 122 FPEMPPPPFRPRHNPASPGSYPSP-VGPFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPN 179
FPEMPPP FRPR++ S G P P VG H D P P DHQ AF HGM PPN
Sbjct: 371 FPEMPPPLFRPRNHLMSSGHPPPPQVG--HPHDHSTVPPMPVDHQQHAFVHGMGRG-PPN 427
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPV-ESGNH 238
DR+P+P G ++ P SPRSW P V G+ G +S RN + E+GN
Sbjct: 428 MDRVPYPRG---------YEGPNSPRSWNPLAVNRGNSGGTADTSSLASRNENLGENGNP 478
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+ TIE+ IP +Y+ HVYGENNSNL+ IRQ SGANVVV+DPKPGATEG+V+VSG
Sbjct: 479 LQNPNNLTIEITIPHMYLTHVYGENNSNLTQIRQTSGANVVVHDPKPGATEGLVIVSGAP 538
Query: 299 DQMRAAQSLIHAFILCGVT 317
DQ AAQSLI AFILCG T
Sbjct: 539 DQTHAAQSLIQAFILCGQT 557
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
S AQ A++RV R + + V +L+ S Q+GC+LGRGG IV ++R+ TGA I
Sbjct: 61 EESAAQVALVRVFERTVDEETK-NSTVSCKLVAPSYQVGCVLGRGGKIVEKIRQDTGAHI 119
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
RV PKDQ P P +E +Q+ GN+ +V+ A+ +++
Sbjct: 120 RVLPKDQPPLPPPPGEEFIQITGNFGAVKKAVLSVSA 156
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG- 84
+ VV +LL H +++G L+G+GG +V ++ TGASI++ G DE V VI
Sbjct: 192 EDVVFKLLCHHEKVGSLIGKGGSVVRALQNETGASIQIV------EAGPDSDERVVVISA 245
Query: 85 -----NYHS-VQDALFHITSRLRETIF 105
HS Q+A+ + RL E F
Sbjct: 246 RETSEQKHSPAQEAVIRVHCRLTEIGF 272
>gi|15217969|ref|NP_175569.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|12321677|gb|AAG50879.1|AC025294_17 hypothetical protein [Arabidopsis thaliana]
gi|12325367|gb|AAG52626.1|AC024261_13 hypothetical protein; 15135-12645 [Arabidopsis thaliana]
gi|31711718|gb|AAP68215.1| At1g51580 [Arabidopsis thaliana]
gi|110735740|dbj|BAE99849.1| hypothetical protein [Arabidopsis thaliana]
gi|332194564|gb|AEE32685.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 621
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/319 (57%), Positives = 205/319 (64%), Gaps = 38/319 (11%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
RHS AQD VMRVH+RI EIGFEP AVVARLLVHS IG LLG+GGH++SEMRRATGASI
Sbjct: 334 RHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASI 393
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYL 119
RVF KDQA + S HDEIVQVIGN +VQDALF I RLRE +FP + G
Sbjct: 394 RVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPF 453
Query: 120 PPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPN 179
PPPPF PR PASP Y SPVGPFH HG P
Sbjct: 454 MGPYPEPPPPFGPRQYPASPDRYHSPVGPFHER---------------HCHG------PG 492
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF---DASSGFTPRNRPVESG 236
DR P GP FDRPPSP SWTPQ G P G D + GF RN P+ S
Sbjct: 493 FDRPP----------GPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSE 542
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N ++TS +E+VIPQ Y+ HVYGEN SNL++I+Q+SGANVVV+DPK G TEG+V+VSG
Sbjct: 543 N--PVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSG 600
Query: 297 TSDQMRAAQSLIHAFILCG 315
TSDQ AQSL+HAFILCG
Sbjct: 601 TSDQAHFAQSLLHAFILCG 619
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 83/160 (51%), Gaps = 18/160 (11%)
Query: 4 SPAQDAVMRVHSRI------AEIG---FEPGQAV-VARLLVHSQQIGCLLGRGGHIVSEM 53
S AQ A++RV RI A + + G++ + R++V Q+ L+ +GG ++ ++
Sbjct: 114 SSAQMALLRVFERIVFGDDAATVDGDELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKI 173
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP---MKRP 110
R +GA +R+ DQ P C P D ++Q+ G + SV+ AL +T+ L+E+ P + P
Sbjct: 174 REDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECP 233
Query: 111 GPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFH 150
P G Y P + M + P+ + P P VGPF+
Sbjct: 234 FPQPG--YPPEYHSM---EYHPQWDHPPPNPMPEDVGPFN 268
>gi|297847528|ref|XP_002891645.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297337487|gb|EFH67904.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 622
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 183/319 (57%), Positives = 205/319 (64%), Gaps = 38/319 (11%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
RHS AQD VMRVH+RI EIGFEP AVVARLLVHS IG LLG+GGH++SEMRRATGASI
Sbjct: 335 RHSLAQDGVMRVHNRIVEIGFEPSAAVVARLLVHSPYIGRLLGKGGHLISEMRRATGASI 394
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYL 119
RVF KDQA + S HDEIVQVIGN +VQDALF I RLRE +FP + G
Sbjct: 395 RVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGLGGPPPPF 454
Query: 120 PPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPN 179
PPPPF PR PASP Y SPVG FH HG P
Sbjct: 455 MGPYPEPPPPFGPRQYPASPDRYHSPVGSFHER---------------HCHG------PG 493
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF---DASSGFTPRNRPVESG 236
DR P GP FDRPPSP SWTPQ G P G D + GF RN P+ S
Sbjct: 494 FDRPP----------GPGFDRPPSPMSWTPQPGIDGHPGGMVPPDVNHGFALRNEPIGSE 543
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A +TS +E+VIPQ Y+ HVYGEN SNL++I+Q+SGANVVV+DPK GATEG+V+VSG
Sbjct: 544 NPA--MTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGATEGLVVVSG 601
Query: 297 TSDQMRAAQSLIHAFILCG 315
TSDQ AQSL+HAFILCG
Sbjct: 602 TSDQAHFAQSLLHAFILCG 620
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 102/311 (32%)
Query: 4 SPAQDAVMRVHSRI------AEI---GFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEM 53
S AQ A++RV RI A + G + G++ + R++V Q+ L+ +GG ++ +
Sbjct: 114 SSAQMALLRVLERIVFGDDAASVDGDGLDKGESESLCRMIVRGNQVDFLMSKGGKMIQRI 173
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQ--VIGNYHSVQDALFHITSRLRETIFPMKRPG 111
R +GA +R+ DQ P C P D ++Q + G + SV+ AL IT+ L+E+ P
Sbjct: 174 REDSGAIVRISSTDQIPPCAFPGDVVIQMKITGKFSSVKKALLLITNCLQESGAP----- 228
Query: 112 PNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHG 171
P + E P P PG P +HSM+
Sbjct: 229 --------PTWDECPFP---------QPGYPPD----YHSME------------------ 249
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR 231
+ P +D PP+P P+ V P NR
Sbjct: 250 ----------------------YHPQWDHPPNP---MPEDV--------------VPFNR 270
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
PV + + ++ P + + G+ + + ++ SGA++ V+DP + E +
Sbjct: 271 PV-------VEEEVSFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERI 323
Query: 292 VMVSGTSDQMR 302
+++S + R
Sbjct: 324 IVISARENLER 334
>gi|357159179|ref|XP_003578365.1| PREDICTED: poly(rC)-binding protein 2-like [Brachypodium
distachyon]
Length = 629
Score = 260 bits (664), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 195/322 (60%), Gaps = 11/322 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RV+SRI+E + AV ARLLV SQ IGCLLG+GG I++EMR TGAS
Sbjct: 310 MMHSPAQDAVLRVYSRISEASMDKSSAVPARLLVPSQHIGCLLGKGGSIIAEMRNVTGAS 369
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV GN+ S+QDAL HIT R+R+ I P K P P+ G S P
Sbjct: 370 IRIFGNEQIPRCAQRNDELVQVTGNFQSIQDALLHITGRIRDVIIPPK-PHPSGGMSPYP 428
Query: 121 PFPEMPPPPFRPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P P P R +PA P G P P+ PF + MGP DH+ H PM
Sbjct: 429 PAGSTPHHP--SRQDPAPPHHSGGMPPYPMHPFRP-NHPMGPFDVADHRPPGQHPAHPME 485
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVE- 234
+DRIP+ YG E+ G P ++ PSPR+W P+ PR D R V
Sbjct: 486 HMGADRIPYSYGCEQGGPRPFLEQ-PSPRTWAPEAQTADAPRSIPDKGLAMDSRKGSVAG 544
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
S N A TSTT EVVIP Y+ + G N S+L+ I++ISGA + V+DPKPG T+ V V
Sbjct: 545 SENQVATPTSTTTEVVIPCKYIGFICGTNGSDLAEIQKISGAAITVHDPKPGDTDASVFV 604
Query: 295 SGTSDQMRAAQSLIHAFILCGV 316
G +Q + AQSLIHAFI CG+
Sbjct: 605 CGDPEQTKKAQSLIHAFIFCGL 626
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGNY 86
V R+L Q+GC+LG+GG V MR+ +GA IRVF KDQ P C DE++ + G++
Sbjct: 112 VGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNKDQVPPCALQGDELIHISGSF 171
Query: 87 HSVQDALFHITSRLRET 103
+ + AL +++ L++
Sbjct: 172 SAARKALLLVSTCLQDN 188
>gi|242045198|ref|XP_002460470.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
gi|241923847|gb|EER96991.1| hypothetical protein SORBIDRAFT_02g028920 [Sorghum bicolor]
Length = 371
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 151/327 (46%), Positives = 200/327 (61%), Gaps = 18/327 (5%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RV+SRI+E + ARLLV SQ IGCLLG+GG I++EMR+ TGAS
Sbjct: 54 MMHSPAQDAVVRVYSRISEASMDRSSPTPARLLVPSQHIGCLLGKGGSIITEMRKITGAS 113
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I P +P P+ G +P
Sbjct: 114 IRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILP--KPHPSGG---MP 168
Query: 121 PFPEMPPPPF-RPRHNPASPGSYPS---PVGPFHSM--DRGMGPSQPFDHQAAFSHGMDP 174
P+P + P + R P P +PS P P HS D MG + DH+ H M+
Sbjct: 169 PYPPVGNIPVHQSRQEPPPPHLHPSGGMPPYPMHSFRPDAPMGHFETGDHRPPPVHSMEY 228
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG--VGGGDPRGF-DASSGFTPRNR 231
M +DR+P+ YG E+ G P ++ PSPR+W P+ PR DA R
Sbjct: 229 M---GADRMPYSYGGEQGGPRPFLEQ-PSPRTWPPEAPRTNSEAPRNMPDAVLATDLRKG 284
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
PV S N A TSTT EVVIP Y+ V G + S + IRQ+SGA++ V+DPKPG T +
Sbjct: 285 PVASENQVATPTSTTTEVVIPCKYIGFVCGNSGSEIEEIRQMSGASITVHDPKPGDTNSI 344
Query: 292 VMVSGTSDQMRAAQSLIHAFILCGVTS 318
V++ G +Q + AQSLIHAFI CG+ +
Sbjct: 345 VVICGDPEQTKKAQSLIHAFIFCGLQT 371
>gi|222641854|gb|EEE69986.1| hypothetical protein OsJ_29891 [Oryza sativa Japonica Group]
Length = 609
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 188/320 (58%), Gaps = 11/320 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RVHSRI+E + AV ARLLV SQ IGCLLG+GG I++EMR+ TGA
Sbjct: 294 MMHSPAQDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAG 353
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I PMK + G P
Sbjct: 354 IRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKP---HPGGGMPP 410
Query: 121 PFPEMPPPPFRPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P PP PR PA P G P P+ F + DR MGP DH+ H M+ M
Sbjct: 411 YPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRA-DRPMGPFDMVDHRPPPPHSMEHM- 468
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG 236
+DR+P+ YG E+ G F PSP +W P+ PR + + +G
Sbjct: 469 --GADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAPNSEAPRNMPETVPPADFRKGAVAG 526
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ S EV+IP+ Y+ + G N S+L+ I+++SGA + V+ PKPG +V++ G
Sbjct: 527 TNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHHPKPGDANALVIICG 586
Query: 297 TSDQMRAAQSLIHAFILCGV 316
DQ + AQSL+HAFI CG+
Sbjct: 587 DPDQTKKAQSLLHAFIFCGL 606
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
Q +V R++ ++ +G ++G+GG + ++ TGASI++ + S +E V VI
Sbjct: 235 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPN------SDSEERVIVISA 288
Query: 86 YHS-------VQDALFHITSRLRET 103
+ + QDA+ + SR+ E+
Sbjct: 289 HENSEMMHSPAQDAVLRVHSRISES 313
>gi|115479947|ref|NP_001063567.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|113631800|dbj|BAF25481.1| Os09g0498600 [Oryza sativa Japonica Group]
gi|215695028|dbj|BAG90219.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 398
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 188/320 (58%), Gaps = 11/320 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RVHSRI+E + AV ARLLV SQ IGCLLG+GG I++EMR+ TGA
Sbjct: 83 MMHSPAQDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAG 142
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I PMK + G P
Sbjct: 143 IRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKP---HPGGGMPP 199
Query: 121 PFPEMPPPPFRPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P PP PR PA P G P P+ F + DR MGP DH+ H M+ M
Sbjct: 200 YPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRA-DRPMGPFDMVDHRPPPPHSMEHM- 257
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG 236
+DR+P+ YG E+ G F PSP +W P+ PR + + +G
Sbjct: 258 --GADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAPNSEAPRNMPETVPPADFRKGAVAG 315
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ S EV+IP+ Y+ + G N S+L+ I+++SGA + V+ PKPG +V++ G
Sbjct: 316 TNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHHPKPGDANALVIICG 375
Query: 297 TSDQMRAAQSLIHAFILCGV 316
DQ + AQSL+HAFI CG+
Sbjct: 376 DPDQTKKAQSLLHAFIFCGL 395
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
Q +V R++ ++ +G ++G+GG + ++ TGASI++ + S +E V VI
Sbjct: 24 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPN------SDSEERVIVISA 77
Query: 86 YHS-------VQDALFHITSRLRET 103
+ + QDA+ + SR+ E+
Sbjct: 78 HENSEMMHSPAQDAVLRVHSRISES 102
>gi|218202392|gb|EEC84819.1| hypothetical protein OsI_31905 [Oryza sativa Indica Group]
Length = 617
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 140/320 (43%), Positives = 188/320 (58%), Gaps = 11/320 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RVHSRI+E + AV ARLLV SQ IGCLLG+GG I++EMR+ TGA
Sbjct: 302 MMHSPAQDAVLRVHSRISESSMDKSSAVTARLLVPSQHIGCLLGKGGSIIAEMRKITGAG 361
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I PMK + G P
Sbjct: 362 IRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDVIIPMKP---HPGGGMPP 418
Query: 121 PFPEMPPPPFRPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P PP PR PA P G P P+ F + DR MGP DH+ H M+ M
Sbjct: 419 YPPGGNAPPHHPRQEPAPPHPTGGMPPYPMPSFRA-DRPMGPFDMVDHRPPPPHSMEHM- 476
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG 236
+DR+P+ YG E+ G F PSP +W P+ PR + + +G
Sbjct: 477 --GADRMPYSYGCEQGGGPRPFLDQPSPSAWAPEAPNSEAPRNMPETVPPADFRKGAVAG 534
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ S EV+IP+ Y+ + G N S+L+ I+++SGA + V+ PKPG +V++ G
Sbjct: 535 TNQVATPSNATEVIIPRKYIGFICGANGSDLAEIKKMSGATITVHHPKPGDANALVIICG 594
Query: 297 TSDQMRAAQSLIHAFILCGV 316
DQ + AQSL+HAFI CG+
Sbjct: 595 DPDQTKKAQSLLHAFIFCGL 614
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGNY 86
V R+L S Q+GC+LG+GG V MR+ +GA IRVF +DQ P +P DE++ + GN+
Sbjct: 110 VGCRMLAASGQVGCVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAPVDELIHISGNF 169
Query: 87 HSVQDALFHITSRLRET 103
+V+ AL +T+ L++
Sbjct: 170 SAVRKALLLVTTCLQDN 186
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 13/85 (15%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
Q +V R++ ++ +G ++G+GG + ++ TGASI++ + S +E V VI
Sbjct: 243 QEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPN------SDSEERVIVISA 296
Query: 86 YHS-------VQDALFHITSRLRET 103
+ + QDA+ + SR+ E+
Sbjct: 297 HENSEMMHSPAQDAVLRVHSRISES 321
>gi|326504604|dbj|BAK06593.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 531
Score = 243 bits (620), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 144/321 (44%), Positives = 191/321 (59%), Gaps = 11/321 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M SP+QDA++RV+S+I+E + +V ARLLV +Q IGCLLG+GG I++EMR+ TGAS
Sbjct: 214 MMRSPSQDALLRVYSKISEASMDKSSSVPARLLVPAQHIGCLLGKGGSIIAEMRKLTGAS 273
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I P K P P+ G +P
Sbjct: 274 IRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPK-PHPSGG---MP 329
Query: 121 PFPEMPPPPFRPRHNPA----SPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P+P + P A S G P P+ PF + MGP D + PM
Sbjct: 330 PYPPVGNPSHHQSRQEAPSHHSGGMPPYPMHPFRP-NPPMGPFDVADPRPPGPPPSHPME 388
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVES 235
+DR+P+PYG E+ G P F PSPR+W P+ PR D R PV S
Sbjct: 389 HMGADRMPYPYGCEQGGPRP-FVEQPSPRTWAPEAPATDAPRSMPDTVPAVDFRKGPVSS 447
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
N A +TT EVVIP Y+ V G N S+L I++ISGA + V+DPKPG T V++
Sbjct: 448 ENQVATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHDPKPGDTNSTVIIC 507
Query: 296 GTSDQMRAAQSLIHAFILCGV 316
G +Q + AQSLIHAFI CG+
Sbjct: 508 GDPEQTKKAQSLIHAFIFCGL 528
>gi|326513114|dbj|BAK06797.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 627
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/322 (44%), Positives = 191/322 (59%), Gaps = 12/322 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M SP+QDA++RV+S+I+E + +V ARLLV +Q IGCLLG+GG I++EMR+ TGAS
Sbjct: 309 MMRSPSQDALLRVYSKISEASMDKSSSVPARLLVPAQHIGCLLGKGGSIIAEMRKLTGAS 368
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I P K P P+ G +P
Sbjct: 369 IRIFGNEQIPRCAQRNDELVQVTGSFQSIQDALLHITGRIRDLIIPPK-PHPSGG---MP 424
Query: 121 PFPEMPPPPFRPRHNPA----SPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
P+P + P A S G P P+ PF + MGP D + PM
Sbjct: 425 PYPPVGNPSHHQSRQEAPSHHSGGMPPYPMHPFRP-NPPMGPFDVADPRPPGPPPSHPME 483
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVES 235
+DR+P+PYG E+ G P F PSPR+W P+ PR D R PV S
Sbjct: 484 HMGADRMPYPYGCEQGGPRP-FVEQPSPRTWAPEAPATDAPRSMPDTVPAVDFRKGPVSS 542
Query: 236 G-NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
N A +TT EVVIP Y+ V G N S+L I++ISGA + V+DPKPG T V++
Sbjct: 543 SENQVATPATTTTEVVIPCKYIGFVCGTNGSDLDEIKKISGAAITVHDPKPGDTNSTVII 602
Query: 295 SGTSDQMRAAQSLIHAFILCGV 316
G +Q + AQSLIHAFI CG+
Sbjct: 603 CGDPEQTKKAQSLIHAFIFCGL 624
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 61/115 (53%), Gaps = 21/115 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGNY 86
V R+L Q+GC+LG+GG V MR+ +GA IRVF ++Q P C DE++ + G++
Sbjct: 110 VGCRMLAAGGQVGCVLGKGGKTVERMRQESGAQIRVFRNREQVPPCALQGDELIHISGSF 169
Query: 87 HSVQDALFHITSRLRE------TIFPMKRP--------------GPNNGHSYLPP 121
+ + AL +++ L++ + FP RP P++ SYLPP
Sbjct: 170 SAARKALLLVSTCLQDNPRPDTSNFPSGRPFGPPGSGVGCPPGVDPHSQRSYLPP 224
>gi|226529077|ref|NP_001146029.1| hypothetical protein [Zea mays]
gi|219885375|gb|ACL53062.1| unknown [Zea mays]
gi|414589866|tpg|DAA40437.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 624
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 144/331 (43%), Positives = 191/331 (57%), Gaps = 31/331 (9%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RV+SRI+E + ARLLV SQ IGCLLG+GG I+SEMR+ TGA+
Sbjct: 307 MLHSPAQDAVVRVYSRISEASIDRSSHTPARLLVPSQHIGCLLGKGGSIISEMRKITGAN 366
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I P +P P+ G +P
Sbjct: 367 IRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILP--KPHPSGG---MP 421
Query: 121 PFP------------EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAF 168
P+P E PPP P S G P P+ PF D MG + DH+
Sbjct: 422 PYPPVGNIPVHQSRQEQPPPHLHP-----SGGMPPYPMHPFRP-DAPMGHFEMGDHRPPP 475
Query: 169 SHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG--VGGGDPRGF-DASSG 225
H M+ M +DR+P+ YG E+ G P ++ PSPR+ P+ PR DA
Sbjct: 476 VHSMEYM---GADRMPYLYGVEQGGPRPFLEQ-PSPRTCPPEAPRTNSEVPRNMSDAVPA 531
Query: 226 FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
R PV N A T TT EV+IP Y+ V G N S + I ++SGA++ V+DPK
Sbjct: 532 TDFRKGPVAIENQVATPTGTT-EVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVHDPKA 590
Query: 286 GATEGVVMVSGTSDQMRAAQSLIHAFILCGV 316
G V++ G ++ + AQSLIHAFI CG+
Sbjct: 591 GDANSKVVICGDPEETKKAQSLIHAFIFCGL 621
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGN 85
AV R+L Q+GC+LG+GG V MR+ GA IRVF ++Q P P DE++ + G+
Sbjct: 108 AVGCRMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHISGS 167
Query: 86 YHSVQDALFHITSRLRET------IFPMKRP--------------GPNNGHSYLPPFPEM 125
+ V+ AL +++ L++ P+ RP P++ SYLPP
Sbjct: 168 FSQVRKALLAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGCPPGMDPHSQRSYLPPH--- 224
Query: 126 PPPPFRPRHNPASPG 140
P + R+ P++ G
Sbjct: 225 -IPDYHTRNYPSNAG 238
>gi|225458964|ref|XP_002283591.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 701
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 188/324 (58%), Gaps = 23/324 (7%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SPAQDAV+RV SRI I + V+ARLLV S QIGCLLG+GG I++EMR+ +GA
Sbjct: 393 RISPAQDAVLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAH 452
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KDQ P+C S ++E+VQ+ G + +VQ+AL IT+RLR F R + H P
Sbjct: 453 IRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHF---RDAFSVNHPSNP 509
Query: 121 PFPEMPP--PPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDHQAAFSHGMDPMVP 177
F + P PP+ R + PG Y S +GP FH D +G P HG
Sbjct: 510 AFTDQVPPFPPYLARREFSPPGMY-SNLGPSFHKFD-AVGVLHP--------HG---GFH 556
Query: 178 PNSDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQG-VGGGDPRGFDASSGFTPRNRP-VE 234
P+ DR PF + R G P +R PS W QG + GG P G +G R P
Sbjct: 557 PHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIGLADFAGGPQRRIPGFG 616
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
GN AI+TSTT+EVV+P+ + +YGE+ L IRQIS A + + +PKPGA+E V+++
Sbjct: 617 GGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIII 676
Query: 295 SGTSDQMRAAQSLIHAFILCGVTS 318
SGT +Q AAQSLI AF+L S
Sbjct: 677 SGTPEQTHAAQSLIQAFVLSETES 700
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ---------AVVARLLVHSQQIGCLLGRGGHIVSEMR 54
S Q A++ V R+AE E V RLLV S Q+GCLLG+GG ++ +M
Sbjct: 149 SSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMS 208
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKR 109
+GA IR+ P+D+ P C SP DE+VQ+ G + + AL I+ +L R+
Sbjct: 209 AESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTN 268
Query: 110 PGPNNGHSYLPPFP--EMPPPP 129
P ++ H + PP P E PPP
Sbjct: 269 PTGSSSHLFGPPLPRSEAQPPP 290
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 14 HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG 73
+S+ + PG VV R+L + + G ++G+GG I+S++R+ TG +RV ++ C
Sbjct: 32 YSQNQSLKISPG-TVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRV--EETVSGC- 87
Query: 74 SPHDEIVQVIG--------NYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ +V + G N S +D ++ E + K PG N+
Sbjct: 88 --DERVVLITGSDKDTEADNEQSKEDGE---DTKAAEEVSDTKEPGEND 131
>gi|302142130|emb|CBI19333.3| unnamed protein product [Vitis vinifera]
Length = 672
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 143/324 (44%), Positives = 188/324 (58%), Gaps = 23/324 (7%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SPAQDAV+RV SRI I + V+ARLLV S QIGCLLG+GG I++EMR+ +GA
Sbjct: 364 RISPAQDAVLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAH 423
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KDQ P+C S ++E+VQ+ G + +VQ+AL IT+RLR F R + H P
Sbjct: 424 IRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHF---RDAFSVNHPSNP 480
Query: 121 PFPEMPP--PPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDHQAAFSHGMDPMVP 177
F + P PP+ R + PG Y S +GP FH D +G P HG
Sbjct: 481 AFTDQVPPFPPYLARREFSPPGMY-SNLGPSFHKFD-AVGVLHP--------HG---GFH 527
Query: 178 PNSDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQG-VGGGDPRGFDASSGFTPRNRP-VE 234
P+ DR PF + R G P +R PS W QG + GG P G +G R P
Sbjct: 528 PHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIGLADFAGGPQRRIPGFG 587
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
GN AI+TSTT+EVV+P+ + +YGE+ L IRQIS A + + +PKPGA+E V+++
Sbjct: 588 GGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQISDAKITITEPKPGASETVIII 647
Query: 295 SGTSDQMRAAQSLIHAFILCGVTS 318
SGT +Q AAQSLI AF+L S
Sbjct: 648 SGTPEQTHAAQSLIQAFVLSETES 671
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ---------AVVARLLVHSQQIGCLLGRGGHIVSEMR 54
S Q A++ V R+AE E V RLLV S Q+GCLLG+GG ++ +M
Sbjct: 120 SSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMS 179
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKR 109
+GA IR+ P+D+ P C SP DE+VQ+ G + + AL I+ +L R+
Sbjct: 180 AESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTN 239
Query: 110 PGPNNGHSYLPPFP--EMPPPP 129
P ++ H + PP P E PPP
Sbjct: 240 PTGSSSHLFGPPLPRSEAQPPP 261
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 14 HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP-------- 65
+S+ + PG VV R+L + + G ++G+GG I+S++R+ TG +RV
Sbjct: 32 YSQNQSLKISPG-TVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRVEETVSGCDER 90
Query: 66 --------KDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
KD ++ QV SVQ AL + R+ E
Sbjct: 91 VVLITGSDKDTEADNEQSKEDDSQVEKGISSVQKALLLVFERMAE 135
>gi|356557593|ref|XP_003547100.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 710
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/342 (39%), Positives = 196/342 (57%), Gaps = 37/342 (10%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+SPAQ A + V SR E+GFE G V RL+V S Q+GCL+G+GG IVSEM
Sbjct: 377 RYSPAQKAAVLVFSRSIEVGFEKGLDSGLNKGSIVTVRLVVPSSQVGCLIGKGGVIVSEM 436
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
R+ATGA+IR+ DQ P+C S +D++VQ+ G + SVQDAL++ RLR+ +F + N
Sbjct: 437 RKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNAMGRLRDNLFVSTQ---N 493
Query: 114 NGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDR--------GMGPSQPFDHQ 165
+ + + P+ + + GS P HS+ R +G S+ DH
Sbjct: 494 SAGTRSLSSLRVDTSPYGRQQDVVPLGSQLPP-ATSHSLSRHTFAQGIDHLGLSRNLDHP 552
Query: 166 AA---FSHGMDP-----MVPPNSDRIPFPYGSERPGHGPTFD-RPPSPRSWTPQGVGGGD 216
++ ++ +D + N DR P R D RP SP W P V G +
Sbjct: 553 SSPGLWTRNLDRPSSPGLWTRNLDRPSSPGLWTR-----NLDHRPSSPGLWAPPTVAGIN 607
Query: 217 PRGF-DASSGFTPRNRPVE--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQI 273
RG D S G T R +E SG+ +AI+T+T +E+V+P + VYGEN SNL+ +RQI
Sbjct: 608 SRGINDFSLGLTSRKGGLELVSGSKSAIVTNTIVEIVVPDDTIDCVYGENGSNLARLRQI 667
Query: 274 SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315
SGANVVV++P+PG ++ ++++SGT D+ +AAQSL+ AFIL G
Sbjct: 668 SGANVVVHEPRPGTSDRIIVISGTPDETQAAQSLLQAFILSG 709
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 7/105 (6%)
Query: 4 SPAQDAVMRVHSRIAEIG-----FEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S AQ+A+++V RI G + G V++ RL+ + Q G ++G+GG +V +++ T
Sbjct: 115 SKAQEALLKVFDRILRSGGGDRSVDVGDRVMSCRLVADAAQAGSVIGKGGKVVERIKKET 174
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G IRV D P C S DEI+++ G SV+ AL ++ RL++
Sbjct: 175 GCKIRVLT-DDLPLCASASDEIIEIEGRVSSVKKALVAVSQRLQD 218
>gi|225464083|ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 178/321 (55%), Gaps = 45/321 (14%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
R+SPAQ+ V+ V +R E G E G V ARL+V S Q+GCL+G+GG I+SEMR
Sbjct: 357 RYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 416
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+A+GA IR+ DQ P+C S +D++VQ+ G + +VQD L+HIT RLR+ +FP K N
Sbjct: 417 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTL---N 473
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
G P+ +PAS G + S +G S F + MD
Sbjct: 474 GAGIRSSSAMNEISPYGRVRDPASFGLHSS-----------VGVSPSFSRHTTLTQSMDH 522
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+ G + D P SPR W Q V G +PR +
Sbjct: 523 L-----------------GLSHSLDHPTSPRLWPSQTVTGVNPRNIKG-------GIELG 558
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG+ +AI+T+TT+E+VIP+ + VYGEN +NL+ +R+ISGA V +++P+PG ++ +V++
Sbjct: 559 SGSKSAIITNTTVEIVIPENVIGSVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVII 618
Query: 295 SGTSDQMRAAQSLIHAFILCG 315
SGT D+ +AAQSL+ AFI G
Sbjct: 619 SGTPDETQAAQSLLQAFIHTG 639
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 67/107 (62%), Gaps = 5/107 (4%)
Query: 1 MRHSPAQDAVMRVHSRIAEI-----GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
+ S AQ+AV+RV RI E+ G PG V RLL + Q+G ++G+GG +V ++RR
Sbjct: 119 VEASAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIGKGGKVVEKIRR 178
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+G+ I+V ++ P C + DE+V++ G+ +V+ AL ++ RL++
Sbjct: 179 ESGSKIKVLTAEKLPTCAASTDEMVEIEGDVLAVKKALVAVSRRLQD 225
>gi|296088778|emb|CBI38228.3| unnamed protein product [Vitis vinifera]
Length = 585
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 178/321 (55%), Gaps = 45/321 (14%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
R+SPAQ+ V+ V +R E G E G V ARL+V S Q+GCL+G+GG I+SEMR
Sbjct: 294 RYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 353
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+A+GA IR+ DQ P+C S +D++VQ+ G + +VQD L+HIT RLR+ +FP K N
Sbjct: 354 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTL---N 410
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
G P+ +PAS G + S +G S F + MD
Sbjct: 411 GAGIRSSSAMNEISPYGRVRDPASFGLHSS-----------VGVSPSFSRHTTLTQSMDH 459
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+ G + D P SPR W Q V G +PR +
Sbjct: 460 L-----------------GLSHSLDHPTSPRLWPSQTVTGVNPRNIKGGI-------ELG 495
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG+ +AI+T+TT+E+VIP+ + VYGEN +NL+ +R+ISGA V +++P+PG ++ +V++
Sbjct: 496 SGSKSAIITNTTVEIVIPENVIGSVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVII 555
Query: 295 SGTSDQMRAAQSLIHAFILCG 315
SGT D+ +AAQSL+ AFI G
Sbjct: 556 SGTPDETQAAQSLLQAFIHTG 576
>gi|147789223|emb|CAN69138.1| hypothetical protein VITISV_022038 [Vitis vinifera]
Length = 569
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 178/321 (55%), Gaps = 45/321 (14%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
R+SPAQ+ V+ V +R E G E G V ARL+V S Q+GCL+G+GG I+SEMR
Sbjct: 278 RYSPAQNGVILVFNRSIEAGIEKGLDSGSKGSPVSARLVVPSNQVGCLMGKGGTIISEMR 337
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+A+GA IR+ DQ P+C S +D++VQ+ G + +VQD L+HIT RLR+ +FP K N
Sbjct: 338 KASGAGIRIIGSDQVPKCASENDQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTL---N 394
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
G P+ +PAS G + S +G S F + MD
Sbjct: 395 GAGIRSSSAMNEISPYGRVRDPASFGLHSS-----------VGVSPSFSRHTTLTQSMDH 443
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+ G + D P SPR W Q V G +PR +
Sbjct: 444 L-----------------GLSHSLDHPTSPRLWPSQTVTGVNPRNIKGGI-------ELG 479
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG+ +AI+T+TT+E+VIP+ + VYGEN +NL+ +R+ISGA V +++P+PG ++ +V++
Sbjct: 480 SGSKSAIITNTTVEIVIPENVIGSVYGENGNNLARLRKISGAKVTLHEPRPGTSDRIVII 539
Query: 295 SGTSDQMRAAQSLIHAFILCG 315
SGT D+ +AAQSL+ AFI G
Sbjct: 540 SGTPDETQAAQSLLQAFIHTG 560
>gi|449438568|ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 179/326 (54%), Gaps = 43/326 (13%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
R+SPAQ AV+ V SR ++ E Q VVARL+V S Q+GC+LG+GG I+SE+R
Sbjct: 362 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIR 421
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGP 112
+ TG +IR+ DQ P C + DEIVQ+ G + +VQDAL+++T RLR+ +F + G
Sbjct: 422 KVTGTNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLFSSVLSNSGT 481
Query: 113 NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
NG +PE P R +P +PVG H H A S
Sbjct: 482 RNGGGT-SVYPETSP---YGRVRDTAPLVRSTPVGTSH--------GSFMQHSTAQS--- 526
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNR 231
S+ G + D P SP W PQ + G R DA G
Sbjct: 527 ----------------SDDLGLSHSLDSPSSPGLWPPQSLSGISSRAISDAGRGLPSHRS 570
Query: 232 PVE--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
V+ SGN AI+T+TT+E+V+P ++ VYGEN +NL+ +RQISGA V+V++P P ++
Sbjct: 571 GVQLGSGNKTAIVTNTTVEIVVPDDVISLVYGENGTNLTRLRQISGAKVIVHEPDPITSD 630
Query: 290 GVVMVSGTSDQMRAAQSLIHAFILCG 315
++++SGT D+ +AAQSL+HAFIL G
Sbjct: 631 RLIVISGTPDETQAAQSLLHAFILTG 656
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 139/339 (41%), Gaps = 55/339 (16%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFE--------PGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
+ S AQ+ +++V RI E+ E V RLL Q+G ++G+GG +V +
Sbjct: 125 VEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLLADVAQVGSVIGKGGKVVEK 184
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK---R 109
+R+ +G IRV D+ P C P DE++++ G+ +++ AL ++ RL++ K R
Sbjct: 185 IRKESGCRIRVL-TDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTVR 243
Query: 110 PGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSM--DRGMGPSQPFDHQAA 167
P H LP M R P P S HS+ D M P P D A
Sbjct: 244 PAEAVIHETLPDL-HMDHILQRNSVLPILPSSSNIFASGIHSLSIDADMLP--PVDTNVA 300
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG----GGDPR--GFD 221
+ ++ N DRI G G T R S VG G D R
Sbjct: 301 QQDVVFKILCAN-DRIGGVI-----GKGGTIVRALQNESGATVSVGPSVTGCDERLISIT 354
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEV-------------------VIPQLYMAHVYGE 262
AS R P + ++ S +++V V+P + V G+
Sbjct: 355 ASENIESRYSPAQKA--VVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGK 412
Query: 263 NNSNLSHIRQISGAN--VVVNDPKPGA---TEGVVMVSG 296
+S IR+++G N ++ +D P ++ +V +SG
Sbjct: 413 GGVIISEIRKVTGTNIRIISSDQVPNCAAESDEIVQISG 451
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
V R+L H+ +IG ++G+ G ++ +++++TG IRV ++AP SP D +V VIG+
Sbjct: 53 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRV---EEAP-SESP-DRVVTVIGS 105
>gi|356546743|ref|XP_003541782.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 663
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/326 (38%), Positives = 182/326 (55%), Gaps = 44/326 (13%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEP--------GQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+SPAQ A + V SR E+GFE G V RL+V S Q+GCL+G+GG IVSE+
Sbjct: 369 RYSPAQKAAVLVFSRSIEVGFEKELDSGLNKGSTVTVRLVVPSSQVGCLIGKGGVIVSEI 428
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
R+ATGA+IR+ DQ P+C S +D++VQ+ G + SVQDAL++ T RLR+ +F + N
Sbjct: 429 RKATGANIRIIGTDQVPKCASDNDQVVQISGEFSSVQDALYNATGRLRDNLFVSTQ---N 485
Query: 114 NGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
+ + + P+ + + GS P H + R H F+ G+D
Sbjct: 486 SAGTRSLSSLRVDTSPYGIQQDFVPHGSQL-PATTSHCLSR---------H--TFAQGID 533
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQ-GVGGGDPRGF-DASSGFTPRNR 231
+ G D P SP WT + G + R D S G T R
Sbjct: 534 HL-----------------GLSRNLDHPSSPGLWTRNLDLAGINSRSINDFSLGLTSRKG 576
Query: 232 PVE--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
+E SG+ +AI+T+TT+E+V+P + VYGEN NL +RQISGA VV+++P+PG ++
Sbjct: 577 GLELVSGSKSAIVTNTTVEIVVPDDTIDCVYGENGRNLVRLRQISGAKVVIHEPRPGTSD 636
Query: 290 GVVMVSGTSDQMRAAQSLIHAFILCG 315
++++SGT D+ +AAQSL+ AFIL G
Sbjct: 637 RIIVISGTPDETQAAQSLLQAFILSG 662
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S AQ+A+++V RI E+ G + G V++ RL+ S Q G ++G+GG +V +++ T
Sbjct: 115 SKAQEALLKVFDRILEVAAEMEGVDVGDRVMSCRLVADSAQAGSVIGKGGKVVERIKKET 174
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G IRV D P C S DE++++ G SV+ AL ++ RL++
Sbjct: 175 GCKIRVLT-DDLPLCASASDEMIEIEGRVSSVKKALVAVSQRLQD 218
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 19/121 (15%)
Query: 12 RVHSRIAEIG----FEPG---QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
RVHS AE+ EP Q V R+L + ++G ++G+GG+IV ++ TGA+I +
Sbjct: 288 RVHSLSAEVNRVSSLEPKALQQEVSFRILCSNDRVGGVIGKGGNIVRALQSETGATISI- 346
Query: 65 PKDQAPRCGSPHDEIVQVIGN------YHSVQDALFHITSRLRETIFPMK-RPGPNNGHS 117
P D ++ + + Y Q A + SR E F + G N G +
Sbjct: 347 ----GPLVAECEDRLITIAASENPESRYSPAQKAAVLVFSRSIEVGFEKELDSGLNKGST 402
Query: 118 Y 118
Sbjct: 403 V 403
>gi|124359392|gb|ABN05856.1| KH, type 1 [Medicago truncatula]
Length = 564
Score = 204 bits (520), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 196/376 (52%), Gaps = 62/376 (16%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+SPAQ A + V SR E G E G +V A+L+V S Q+GCLLG+GG IVSEM
Sbjct: 187 RYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEM 246
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPG 111
R+ATGASIR+ D+ +C S +D++VQ+ G + +VQDAL++ T RLR+ +F +K G
Sbjct: 247 RKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAG 306
Query: 112 P---NNGHSYLPPFPEMPPPPF--------------RPRHNP-ASPGSYPSPVGPFHSM- 152
++ S P+ + P R R P S + P+ +
Sbjct: 307 TRSLSSVQSDTSPYGRLRDVPLGSQSSLRADTNAFVRLRDVPLVGQSSLQADTSPYVRLR 366
Query: 153 DRGMGPSQ---------------PFDHQAAFSHGMDPM---------------VPPNSDR 182
D +G P Q++ P + + R
Sbjct: 367 DVSLGGQSSLQSDTSPYGRLRDIPLGGQSSLQSDTSPYGKLRDIPLGGQSAVGISHSLSR 426
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVE--SGNHA 239
F G + G +DRP SP WTP V G + +AS G T R +E SG+ +
Sbjct: 427 HTFSQGIDHFSLGRNYDRPSSPGLWTPPRVTGMNSGSINEASWGSTSRKGGLELVSGSKS 486
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
AI+T+TTIE+V+P+ + VYGEN SNL+ +RQISGA VV+++P+PG ++ +++SG+ D
Sbjct: 487 AIVTNTTIEIVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPD 546
Query: 300 QMRAAQSLIHAFILCG 315
+ +AAQSL+ AFIL G
Sbjct: 547 ETQAAQSLLQAFILNG 562
>gi|224067136|ref|XP_002302373.1| predicted protein [Populus trichocarpa]
gi|222844099|gb|EEE81646.1| predicted protein [Populus trichocarpa]
Length = 680
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 138/320 (43%), Positives = 184/320 (57%), Gaps = 35/320 (10%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
R S QDAV+RV +RIA +A++ARLLV S QIGCLLG+GG I+SEMR+++GA I
Sbjct: 382 RISAPQDAVIRVQTRIAMAISNKEKAIIARLLVSSNQIGCLLGKGGAIMSEMRKSSGAYI 441
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ KDQ P C S + +VQ+ G + V++AL IT+RLR F + P+ H P
Sbjct: 442 RILGKDQIPNCASESEGVVQINGEFEVVKEALLQITTRLRHHFF--QNLFPSMDHLSNPA 499
Query: 122 FPEMPP--PPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV--P 177
F + P PP+ R SP PFHS FD G P V P
Sbjct: 500 FLDQVPPFPPYMGRKE-LSP--------PFHSFPN-------FDGMV----GAPPHVSFP 539
Query: 178 PNSDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQG-VGGGDPRGFDASSGFTPRNRPVES 235
P+ D PF + RPG P +R P W PQG V GG P G +G P+ R
Sbjct: 540 PHDDHPPFMHNIHRPGMPPHIAERKP----WGPQGFVEGGGPMGLPDFAG-PPQRRISGF 594
Query: 236 G--NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
G +H AI+TSTTIEV++P+ + +YGE+ + L IRQIS A + +N+PKPGA+E V++
Sbjct: 595 GGVSHPAIITSTTIEVIVPRTIVPVIYGEDGACLKQIRQISDAKITINEPKPGASETVII 654
Query: 294 VSGTSDQMRAAQSLIHAFIL 313
+SGT +Q AAQSLI AF++
Sbjct: 655 ISGTPEQTHAAQSLIQAFVM 674
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/74 (43%), Positives = 50/74 (67%)
Query: 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
+ RLLV S Q+GCLLG+GG ++ +M +GA IR+ P+D+ P C S DE+V++ G +
Sbjct: 184 ILRLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRISPRDRLPICSSVSDELVEITGEIDA 243
Query: 89 VQDALFHITSRLRE 102
V+ AL ++ +L E
Sbjct: 244 VRKALQSVSKQLLE 257
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 223 SSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 282
++G N+P++S A + ++ P + V GE + +S IRQ +GA V+V +
Sbjct: 28 TAGTNSPNQPLKSSPAAVVF-----RILCPAPKIGTVTGEGGAVISQIRQETGAKVIVEE 82
Query: 283 PKPGATEGVVMVSGTSDQMRAA 304
PG E +++++G+ ++ +
Sbjct: 83 NIPGCDEQIIVITGSDEKTEVS 104
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH--- 87
RLL H++++G ++G+GG I+ +++ TG I+V D ++ + G H
Sbjct: 327 RLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEG-----VSDSEDRVIVISGLAHPDD 381
Query: 88 ---SVQDALFHITSRLRETI 104
+ QDA+ + +R+ I
Sbjct: 382 RISAPQDAVIRVQTRIAMAI 401
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86
AVV R+L + +IG + G GG ++S++R+ TGA +V ++ P C ++I+ + G+
Sbjct: 44 AVVFRILCPAPKIGTVTGEGGAVISQIRQETGA--KVIVEENIPGC---DEQIIVITGSD 98
Query: 87 HSVQDAL 93
+ ++
Sbjct: 99 EKTEVSI 105
>gi|357445989|ref|XP_003593272.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482320|gb|AES63523.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 766
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 134/376 (35%), Positives = 196/376 (52%), Gaps = 62/376 (16%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+SPAQ A + V SR E G E G +V A+L+V S Q+GCLLG+GG IVSEM
Sbjct: 389 RYSPAQKATVLVFSRSVEAGIEKGIDSGLNTGSSVTAQLVVSSNQVGCLLGKGGVIVSEM 448
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPG 111
R+ATGASIR+ D+ +C S +D++VQ+ G + +VQDAL++ T RLR+ +F +K G
Sbjct: 449 RKATGASIRIVGTDKVSKCASDNDQVVQISGEFSNVQDALYNATGRLRDNLFGGTLKSAG 508
Query: 112 P---NNGHSYLPPFPEMPPPPF--------------RPRHNP-ASPGSYPSPVGPFHSM- 152
++ S P+ + P R R P S + P+ +
Sbjct: 509 TRSLSSVQSDTSPYGRLRDVPLGSQSSLRADTNAFVRLRDVPLVGQSSLQADTSPYVRLR 568
Query: 153 DRGMGPSQ---------------PFDHQAAFSHGMDPM---------------VPPNSDR 182
D +G P Q++ P + + R
Sbjct: 569 DVSLGGQSSLQSDTSPYGRLRDIPLGGQSSLQSDTSPYGKLRDIPLGGQSAVGISHSLSR 628
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVE--SGNHA 239
F G + G +DRP SP WTP V G + +AS G T R +E SG+ +
Sbjct: 629 HTFSQGIDHFSLGRNYDRPSSPGLWTPPRVTGMNSGSINEASWGSTSRKGGLELVSGSKS 688
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
AI+T+TTIE+V+P+ + VYGEN SNL+ +RQISGA VV+++P+PG ++ +++SG+ D
Sbjct: 689 AIVTNTTIEIVVPEDTLYLVYGENGSNLARLRQISGAKVVIHEPRPGTSDRTIVLSGSPD 748
Query: 300 QMRAAQSLIHAFILCG 315
+ +AAQSL+ AFIL G
Sbjct: 749 ETQAAQSLLQAFILNG 764
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S AQ+A++RV RI E+ G E G + V RL+ S Q G ++G+GG +V ++++ T
Sbjct: 122 SKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKKDT 181
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G I V KD P C S DE++++ G+ SV+ AL ++ L++
Sbjct: 182 GCKIWVC-KDNLPACISSPDEVIEIEGSVSSVKKALVAVSRNLQD 225
>gi|449516663|ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 201 bits (512), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 173/324 (53%), Gaps = 59/324 (18%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
R+SPAQ AV+ V SR ++ E Q VVARL+V S Q+GC+LG+GG I+SE+R
Sbjct: 367 RYSPAQKAVVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGKGGVIISEIR 426
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ TG +IR+ DQ P C + DEIVQ+ G + +VQDAL+++T RLR+ +F
Sbjct: 427 KVTGTNIRIISSDQVPNCAAESDEIVQISGEFSNVQDALYNVTGRLRDNLF--------- 477
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
L P+ R +P +PVG H H A S
Sbjct: 478 ----LVPY---------GRVRDTAPLVRSTPVGTSH--------GSFMQHSTAQS----- 511
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPV 233
S+ G + D P SP W PQ + G R DA G V
Sbjct: 512 --------------SDDLGLSHSLDSPSSPGLWPPQSLSGISSRAISDAGRGLPSHRSGV 557
Query: 234 E--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
+ SGN AI+T+TT+E+V+P ++ VYGEN +NL+ +RQISGA V+V++P P + +
Sbjct: 558 QLGSGNKTAIVTNTTVEIVVPDDVISLVYGENGTNLTRLRQISGAKVIVHEPDPITNDRL 617
Query: 292 VMVSGTSDQMRAAQSLIHAFILCG 315
+++SGT D+ +AAQSL+HAFIL G
Sbjct: 618 IVISGTPDETQAAQSLLHAFILTG 641
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 139/339 (41%), Gaps = 55/339 (16%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFE--------PGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
+ S AQ+ +++V RI E+ E V RLL Q+G ++G+GG +V +
Sbjct: 130 VEASKAQEGLLKVFERILEVAAEIEGVEVGAEVGVVYCRLLADVAQVGSVIGKGGKVVEK 189
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK---R 109
+R+ +G IRV D+ P C P DE++++ G+ +++ AL ++ RL++ K R
Sbjct: 190 IRKESGCRIRVL-TDKLPACAGPSDEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTVR 248
Query: 110 PGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSM--DRGMGPSQPFDHQAA 167
P H LP M R P P S HS+ D M P P D A
Sbjct: 249 PAEAVIHETLPDL-HMDHILQRNSVLPILPSSSNIFASGIHSLSIDADMLP--PVDTNVA 305
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG----GGDPR--GFD 221
+ ++ N DRI G G T R S VG G D R
Sbjct: 306 QQDVVFKILCAN-DRIGGVI-----GKGGTIVRALQNESGATVSVGPSVTGCDERLISIT 359
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEV-------------------VIPQLYMAHVYGE 262
AS R P + ++ S +++V V+P + V G+
Sbjct: 360 ASENIESRYSPAQKA--VVLVFSRSVDVAIEKWQESSSKGSPVVARLVVPSNQVGCVLGK 417
Query: 263 NNSNLSHIRQISGAN--VVVNDPKPGA---TEGVVMVSG 296
+S IR+++G N ++ +D P ++ +V +SG
Sbjct: 418 GGVIISEIRKVTGTNIRIISSDQVPNCAAESDEIVQISG 456
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%), Gaps = 5/58 (8%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
V R+L H+ +IG ++G+ G ++ +++++TG IRV ++AP SP D +V VIG+
Sbjct: 58 VAFRMLCHASRIGGVIGKSGFVIKQLQQSTGVKIRV---EEAPS-ESP-DRVVTVIGS 110
>gi|414589867|tpg|DAA40438.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 640
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 176/311 (56%), Gaps = 31/311 (9%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
M HSPAQDAV+RV+SRI+E + ARLLV SQ IGCLLG+GG I+SEMR+ TGA+
Sbjct: 307 MLHSPAQDAVVRVYSRISEASIDRSSHTPARLLVPSQHIGCLLGKGGSIISEMRKITGAN 366
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F +Q PRC +DE+VQV G++ S+QDAL HIT R+R+ I P +P P+ G +P
Sbjct: 367 IRIFGNEQIPRCAQRNDEMVQVTGSFQSIQDALLHITGRIRDVILP--KPHPSGG---MP 421
Query: 121 PFP------------EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAF 168
P+P E PPP P S G P P+ PF D MG + DH+
Sbjct: 422 PYPPVGNIPVHQSRQEQPPPHLHP-----SGGMPPYPMHPFRP-DAPMGHFEMGDHRPPP 475
Query: 169 SHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG--VGGGDPRGF-DASSG 225
H M+ M +DR+P+ YG E+ G P ++ PSPR+ P+ PR DA
Sbjct: 476 VHSMEYM---GADRMPYLYGVEQGGPRPFLEQ-PSPRTCPPEAPRTNSEVPRNMSDAVPA 531
Query: 226 FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
R PV N A T TT EV+IP Y+ V G N S + I ++SGA++ V+DPK
Sbjct: 532 TDFRKGPVAIENQVATPTGTT-EVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVHDPKA 590
Query: 286 GATEGVVMVSG 296
G V++ G
Sbjct: 591 GDANSKVVICG 601
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 25/135 (18%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGN 85
AV R+L Q+GC+LG+GG V MR+ GA IRVF ++Q P P DE++ + G+
Sbjct: 108 AVGCRMLAAGWQVGCVLGKGGKTVERMRQECGAQIRVFRNREQLPPWAPPGDELIHISGS 167
Query: 86 YHSVQDALFHITSRLRET------IFPMKRP--------------GPNNGHSYLPPFPEM 125
+ V+ AL +++ L++ P+ RP P++ SYLPP
Sbjct: 168 FSQVRKALLAVSTCLQDNPRPDTHNIPIGRPFGLPGSGTGCPPGMDPHSQRSYLPPH--- 224
Query: 126 PPPPFRPRHNPASPG 140
P + R+ P++ G
Sbjct: 225 -IPDYHTRNYPSNAG 238
>gi|255537898|ref|XP_002510014.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223550715|gb|EEF52201.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 679
Score = 197 bits (500), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 141/322 (43%), Positives = 184/322 (57%), Gaps = 37/322 (11%)
Query: 2 RHSPAQDAVMRVHSRIAEI-----GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRA 56
R S AQDAV+RV +RIA G E +AV+ RLLV S QIGCLLG+GG I++EMR++
Sbjct: 379 RISAAQDAVLRVQTRIARALPLPEGKE--KAVIGRLLVSSNQIGCLLGKGGAIMAEMRKS 436
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
TGA IR+ KDQ P+C S ++E+VQ+ G + VQ+AL IT+RLR F + P+ H
Sbjct: 437 TGAYIRILGKDQIPKCASENEEVVQINGEHEVVQEALLQITTRLRNHFF--RDVFPSIDH 494
Query: 117 SYLPPFPEMPP--PPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
P F + P PP+ R SP P FHS D GP P
Sbjct: 495 PSNPAFLDQAPPFPPYMGRRE-LSP-----PFHAFHSFDGMGGPPPPVGFH--------- 539
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGV-GGGDPRGFDASSGFTPRNRPV 233
P+ D PF + RPG P F+R P W PQG+ G P G G P+ R
Sbjct: 540 ---PHDDHSPFMHNIHRPGMPPHFERKP----WGPQGLMEAGGPMGLPEFGGH-PQRRIS 591
Query: 234 ESG--NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
G NH AI+TSTT+EVV+P+ + +YGE+ + L IRQIS A + V +PKPGA E V
Sbjct: 592 GFGGVNHPAIITSTTVEVVVPRSVVPVIYGEDGACLKQIRQISDAKITVTEPKPGAAETV 651
Query: 292 VMVSGTSDQMRAAQSLIHAFIL 313
+++SGT +Q AAQSLI AF++
Sbjct: 652 IIISGTPEQTHAAQSLIQAFVM 673
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%), Gaps = 9/108 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLV S Q+GCLLG+GG ++ +M +GA IR+ P+D+ P C SP DE+VQ+ G +++
Sbjct: 182 RLLVLSSQVGCLLGKGGSVIKQMSAESGAQIRILPRDKLPICASPTDELVQIAGEVDAIR 241
Query: 91 DALFHITSRLRET------IFPMKRPGPNNGHSYLPPF--PEMPPPPF 130
AL + +L E +P GP++ HS+ P PE PPP+
Sbjct: 242 KALQSVAQQLLENPPKDPEAYPPISTGPSS-HSFGHPLPRPEAYPPPY 288
>gi|449436912|ref|XP_004136236.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449522219|ref|XP_004168125.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 693
Score = 196 bits (498), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 131/321 (40%), Positives = 176/321 (54%), Gaps = 28/321 (8%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SP QDAV RV +RI + + Q +VAR LV S QIGCLLG+GG I++EMR++TGA
Sbjct: 396 RISPVQDAVFRVQARIVKAAADSKEQNLVARFLVSSNQIGCLLGKGGSIIAEMRKSTGAY 455
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+Q P+C +E+VQ+ G +VQDA+F IT+RLR F P N+ HS P
Sbjct: 456 IRILGKEQIPKCAGEDEEVVQINGEPETVQDAMFQITTRLRHHFFRDAFPSVNS-HSN-P 513
Query: 121 PFPEMPP--PPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDHQAAFSHGMDPMVP 177
F + P P + R + PG Y S +GP FH D A S G+ +
Sbjct: 514 AFIDRLPSFPSYFGRRELSPPGIY-SSLGPSFHKFD-------------ALS-GIPSLSD 558
Query: 178 PNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGN 237
DR PF + RPG DR P W+ QG+ G D + R GN
Sbjct: 559 LRDDRPPFLH---RPGAPLLSDRKP----WSSQGLVEGGVGLSDFAGAHHRRIAGFGGGN 611
Query: 238 HAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
AI+TSTT+EVV+P+ + + GEN L IRQIS A + + +PK G E ++++SGT
Sbjct: 612 SPAIITSTTVEVVVPRNIVPVICGENGECLKQIRQISDAKITITEPKQGDVETMIIISGT 671
Query: 298 SDQMRAAQSLIHAFILCGVTS 318
+Q AAQSLI AF++ S
Sbjct: 672 PEQTHAAQSLIQAFVISETES 692
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 47/75 (62%)
Query: 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
+ RLLV S Q+GCLLG+GG +V +M +GA IR+ P+D+ P + + E+VQ+ G
Sbjct: 185 ILRLLVLSSQVGCLLGKGGSVVKQMSSDSGAQIRILPRDKLPPFVATNVELVQISGGIDV 244
Query: 89 VQDALFHITSRLRET 103
V+ AL + +L E
Sbjct: 245 VKKALELVFQQLIEN 259
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH--- 87
RLL ++++G ++G+GG IV +++ TG I+V D A D I+ V G H
Sbjct: 341 RLLCPTERVGNVIGKGGAIVKTLQQDTGCDIKVV--DGAL---DSEDRIILVAGPAHPDD 395
Query: 88 ---SVQDALFHITSRL 100
VQDA+F + +R+
Sbjct: 396 RISPVQDAVFRVQARI 411
>gi|224141139|ref|XP_002323932.1| predicted protein [Populus trichocarpa]
gi|222866934|gb|EEF04065.1| predicted protein [Populus trichocarpa]
Length = 722
Score = 190 bits (482), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 128/364 (35%), Positives = 192/364 (52%), Gaps = 51/364 (14%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQA--------VVARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ ++ V SR E G E G V ARL+V Q+GCLLG+GG I+SEM
Sbjct: 358 RYSAAQKTIVLVFSRAVESGIEKGLDPGSSRGSPVTARLVVSPSQVGCLLGKGGTIISEM 417
Query: 54 RRATGASIRVFPKDQA-PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRP 110
R+AT SIR+ DQ P+C D +V++ G++ +V+DA++H+T RLR+ +F + P
Sbjct: 418 RKATSTSIRIIVGDQRNPKCVPETDHVVEISGDFVNVKDAIYHVTGRLRDNLFSGMLSTP 477
Query: 111 GPNNGHSYLP---PFPEMPPP----PFRPRHNPASPGSYPSPV-----GPFHSMDRG--M 156
G + S L P+ ++ P + P +P ++ P+ PF R
Sbjct: 478 GARSNSSVLAEISPYVKLMDPVRDSSWEPVRDPLR-DAFRDPLREPVRDPFRETVRDPFR 536
Query: 157 GPSQ-PFDH--QAAFSHGM-DPMVPPNSDRIPF------------------PYGSERPGH 194
P + PF + F + DP+ P D P+ + G
Sbjct: 537 EPVRDPFREPVRDLFREPVRDPLREPARDSAPYIMQPTPGNSHNLSRQTVITQNMDHLGL 596
Query: 195 GPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP---VESGNHAAILTSTTIEVVI 251
+ DRPPSPR W Q + +PRG S P + + SG +A +T+TT+E+V+
Sbjct: 597 SHSLDRPPSPRLWASQTIPRVNPRGISDVSRRLPSLKAGLELGSGGKSAFVTNTTVEIVV 656
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
P+ VYGEN SNL+ +RQISGA V+V++P+ G ++ +V++SGT D+ +AAQSL+ AF
Sbjct: 657 PENAFGSVYGENGSNLARLRQISGAKVIVHEPRLGTSDRIVVISGTPDETQAAQSLLQAF 716
Query: 312 ILCG 315
IL G
Sbjct: 717 ILTG 720
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
S Q+A++RV RI E+ E V R+L +G ++G+GG +V ++R+ G
Sbjct: 106 SKGQEALVRVFERILEVAAESDSVADGVVSCRMLAEVSSVGAVIGKGGKVVEKIRKDCGC 165
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
I+V D+ P C + ++E++++ G+ +V+ L ++ L++
Sbjct: 166 RIKVL-VDKLPDCAASNEEMIEIEGDVSAVKKGLVAVSRCLQD 207
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
RLL H+ +IG ++G+ G+I+ +++ TGA +R+ + AP SP D ++ VIG
Sbjct: 39 RLLCHASRIGGVIGKAGNIIKGLQQQTGAKVRI---EDAP-SDSP-DRVITVIG 87
>gi|357466759|ref|XP_003603664.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355492712|gb|AES73915.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 662
Score = 187 bits (476), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 124/317 (39%), Positives = 172/317 (54%), Gaps = 35/317 (11%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SP Q+A+ RV +RI+ + + +++AR++V S+ IGCLLG+GG I++EMR +GA
Sbjct: 370 RISPVQEAIFRVQNRISRAMLDSKEHSMLARVIVSSKHIGCLLGKGGSIIAEMRNLSGAH 429
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN--NGHSY 118
IR+ KD+ P+C S DE++QV G +V DAL IT+RLR F P N + ++
Sbjct: 430 IRMLGKDKGPKCVSEDDEVIQVSGVIEAVHDALLQITTRLRNNFFRDAFPSANFPSNSAF 489
Query: 119 LPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPP 178
L P PP+ R + PG Y S +GP H P F P
Sbjct: 490 LDQHS--PFPPYLGRRGLSPPGMY-SDLGPRH-------PHADF---------------P 524
Query: 179 NSDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQGV-GGGDPRGFDASSGFTPRNRPVESG 236
D PF R G P +R P W P+G+ GG G +G PR +G
Sbjct: 525 LDDHPPFMNNMYRSGIPPLISERKP----WGPKGILEGGGHMGLPEFAG-GPRRISGFAG 579
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
I+TSTT+EVV+P+ +A +YGEN L I QIS ANV++ DP PGA E +++SG
Sbjct: 580 GSQPIITSTTVEVVVPRALVAEIYGENGECLKQILQISDANVIITDPIPGAVETKIIISG 639
Query: 297 TSDQMRAAQSLIHAFIL 313
T +Q AAQSLI AF++
Sbjct: 640 TPEQTNAAQSLIQAFVM 656
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 19/175 (10%)
Query: 9 AVMRVHSRIAEI--GFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 65
AVM V R+AE G E + RLL+ S Q+GC+LG+GG ++ M +GA IR+ P
Sbjct: 143 AVMLVFERVAEDEGGDESKKGYFGLRLLILSNQVGCILGKGGSVIKRMSAESGAQIRILP 202
Query: 66 KDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET------IFPMKRPGPNNGHSYL 119
K++ P C S DE+VQ+ G V+ AL + +L E P GP++ HSY
Sbjct: 203 KEEIPACASDSDELVQITGGVEVVRRALQSVFQQLVENSPRDHESLPTNLTGPSS-HSY- 260
Query: 120 PPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
+ PP AS + P+ + FHS P P H+ A M P
Sbjct: 261 ---GQFPPNKRTFAGQGASFATGPNEIPVFHS-----APMIPKFHEGAILGRMRP 307
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + + RLL S+ +G L+G+GG I+ +++ T + I+V + P GS D I+ +
Sbjct: 308 PPEILTFRLLCPSESVGNLIGKGGSIIKMLQQETASEIKVI--EAIP--GS-EDCIIIIS 362
Query: 84 GNYH------SVQDALFHITSRLRETIFPMKR 109
G H VQ+A+F + +R+ + K
Sbjct: 363 GPAHPDDRISPVQEAIFRVQNRISRAMLDSKE 394
>gi|297794027|ref|XP_002864898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297310733|gb|EFH41157.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 865
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 127/349 (36%), Positives = 191/349 (54%), Gaps = 45/349 (12%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ + P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 520 SPAQKAIMLLFSRLFELSTKKILDNGPRTSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 579
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
GA+I++ +Q P+C S +D+++Q+ G + +V++A+FHITSRLR+++F S
Sbjct: 580 GATIQILKVEQNPKCVSENDQVIQITGEFPNVREAIFHITSRLRDSVFSNSMKNSITKSS 639
Query: 118 YLPPFPEMPPPPFRPRHNPASPGSYPSPVGP---FHSMDRGMGPSQPFDHQAAFSH---- 170
+ R NP S GS+ S P S+ R S ++ ++
Sbjct: 640 SALTTERI---YHRQSDNPLSIGSHQSVSNPPTNSSSLHRRSEDSFLSGSHSSVNYSRPV 696
Query: 171 GMDPMVPPNSDRIPFP-YGSERPGHGPTFDRPPS--------------PRSWT---PQGV 212
G DP V P PFP + G+ P F R + R W P
Sbjct: 697 GTDPYVRPED---PFPDRFNPSAGYSPNFGRRFTMDHSDISHHLTEVPSRLWASPPPAA- 752
Query: 213 GGGDPRGF-DASSGFTPRN--RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSH 269
PRG DAS G + + SG+ +AI+T+TT+E+ +P+ M+ VYGE NL
Sbjct: 753 ----PRGLSDASGGLSSARAGHALGSGHKSAIVTNTTVEIRVPENAMSFVYGEQGYNLEQ 808
Query: 270 IRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVTS 318
+RQISGA V+V++P G ++ ++++SGT DQ +AAQ+L+HAFIL G TS
Sbjct: 809 LRQISGARVIVHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 857
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 126 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 183
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V++ GN +V+ AL I+ L +E
Sbjct: 184 RTEN-LPICADTDDEMVEIEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 242
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHN---PASPGSYPSPVGPFHSM 152
+ RP LP E+ P +R R + P + PS V P ++
Sbjct: 243 SLHRPIETIIQESLPRSIEVNPYDYRLRKDEIFPRGTLARPSDVNPHDTL 292
>gi|22328051|ref|NP_201244.2| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010501|gb|AED97884.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 857
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 190/345 (55%), Gaps = 37/345 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ G + +V++A+FHITSRLR+++F MK
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK------- 624
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 625 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 684
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 685 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 744
Query: 217 PRGFDASSGFTPRNRP---VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQI 273
PRG +SG R + SG+ +AI+T+TT+E+ +P M+ VYGE NL +RQI
Sbjct: 745 PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQI 804
Query: 274 SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVTS 318
SGA V++++P G ++ ++++SGT DQ +AAQ+L+HAFIL G TS
Sbjct: 805 SGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 849
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
RLL +G ++G+ G+++ +++++TGA IRV + P GSP D ++ +I S
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV----EEPPSGSP-DRVITIIAQADS 102
>gi|28261403|gb|AAO37828.1| HEN4 [Arabidopsis thaliana]
Length = 869
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 189/345 (54%), Gaps = 37/345 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 524 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 583
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ + +V++A+FHITSRLR+++F MK
Sbjct: 584 GAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMK------- 636
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 637 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 696
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 697 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 756
Query: 217 PRGFDASSGFTPRNRP---VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQI 273
PRG +SG R + SG+ +AI+T+TT+E+ +P M+ VYGE NL +RQI
Sbjct: 757 PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQI 816
Query: 274 SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVTS 318
SGA V++++P G ++ ++++SGT DQ +AAQ+L+HAFIL G TS
Sbjct: 817 SGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 861
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
>gi|334188619|ref|NP_001190612.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010502|gb|AED97885.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 866
Score = 182 bits (462), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 127/354 (35%), Positives = 189/354 (53%), Gaps = 46/354 (12%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ G + +V++A+FHITSRLR+++F MK
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK------- 624
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 625 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 684
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 685 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 744
Query: 217 PRGFDASSGFTPRNRP------------VESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
PRG +SG R SG+ +AI+T+TT+E+ +P M+ VYGE
Sbjct: 745 PRGLSDASGGLSSARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQG 804
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVTS 318
NL +RQISGA V++++P G ++ ++++SGT DQ +AAQ+L+HAFIL G TS
Sbjct: 805 YNLEQLRQISGARVIIHEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 858
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
>gi|356518382|ref|XP_003527858.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 676
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 129/316 (40%), Positives = 171/316 (54%), Gaps = 32/316 (10%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SP Q+AV RV +RIA+ I ++AR LV S QIGCLLG+GG I++EMR+ +GA
Sbjct: 383 RISPVQEAVFRVQTRIAKPIPDAKDHIMLARFLVSSTQIGCLLGKGGSIITEMRKKSGAH 442
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KD+ P+C S +E++QV G +V DAL IT+RL+ F P N S P
Sbjct: 443 IRILGKDKVPKCASEDEEVIQVNGEIEAVHDALLQITTRLKHHCFRDSYPSVNY-PSNSP 501
Query: 121 PFPEMPP-PPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPN 179
++PP PP+ R + P Y S +G P H A F P
Sbjct: 502 FLDQLPPFPPYLGRRGLSPPRMY-SDLG------------HPHPH-AGF---------PL 538
Query: 180 SDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQGV-GGGDPRGFDASSGFTPRNRPVESGN 237
DR PF RPG P +R P W PQG+ GG P G G PR +G
Sbjct: 539 DDRPPFLNSIHRPGLPPHISERKP----WGPQGILEGGIPIGLPDFPGGPPRRISGFAGG 594
Query: 238 HAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
I+TSTT+EVV+P+ + +YGE+ L I QIS AN+ + DPKPG E +++SGT
Sbjct: 595 SQPIITSTTVEVVVPRAVVPVIYGEDGECLKQILQISDANITITDPKPGTVETKIIISGT 654
Query: 298 SDQMRAAQSLIHAFIL 313
+Q AAQSLI AF++
Sbjct: 655 PEQTHAAQSLIQAFVM 670
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 87/172 (50%), Gaps = 21/172 (12%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ + Q+GC+LG+GG ++ M +GA IR+ PKD+ P C S DEIVQ+ G+ V+
Sbjct: 180 RLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKLPACASASDEIVQISGSVEVVR 239
Query: 91 DALFHITSRLRET------IFPMKRPGPNNGHSYLPPFPEMPP--PPFRPRHNPASPGSY 142
AL ++ +L E K GP++ HS F + PP F + P + G
Sbjct: 240 KALQSVSQQLLENPPRDHDSLSAKSTGPSS-HS----FGQFPPHNRSFSAQGEPFASG-- 292
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGH 194
P + FHS P P H+AA M P+ + R+ P +ER G+
Sbjct: 293 PHDISAFHS----AAPLIPKFHEAAIHGRMRPLQEMLTFRLLCP--AERVGN 338
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 46/74 (62%), Gaps = 6/74 (8%)
Query: 18 AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHD 77
+ +G PG +VV RLL H+ +IG ++G+GG I+S++R+ TG +R+ ++ P C +
Sbjct: 25 SSLGVSPG-SVVFRLLCHASRIGGVIGKGGSIISQIRQETGVKLRI--EEAVPGC---DE 78
Query: 78 EIVQVIGNYHSVQD 91
++ + G+ ++
Sbjct: 79 RVITISGSEKETEE 92
>gi|356507955|ref|XP_003522728.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 678
Score = 174 bits (440), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 170/315 (53%), Gaps = 30/315 (9%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SP Q+AV RV +RIA+ I ++AR LV S QIGCLLG+GG I++EMR+ +GA
Sbjct: 385 RVSPVQEAVFRVQTRIAKPIPDANDHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAH 444
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KD+ P+C S +E++QV G +V +AL IT+RL+ F P N S P
Sbjct: 445 IRILGKDKVPKCASEDEEVIQVNGEIEAVHEALLQITTRLKHHFFRDSYPSVNY-PSNSP 503
Query: 121 PFPEMPP-PPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPN 179
++PP PP+ R + PG Y S +GP P H A F P
Sbjct: 504 FLDQLPPFPPYLGRRGLSPPGMY-SDLGP------------PPSH-AGF---------PL 540
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGV-GGGDPRGFDASSGFTPRNRPVESGNH 238
DR F RPG P + + W P GV GG P G PR +G
Sbjct: 541 DDRPAFLNNIHRPGLPPHISQR---KPWGPLGVLEGGTPIGLPDFPRGPPRRISGFAGGS 597
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
I+TSTT+EVV+P+ + +YGE+ L I QIS AN+ + DPKPGA E +++SGT
Sbjct: 598 QPIITSTTVEVVVPRAVVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTP 657
Query: 299 DQMRAAQSLIHAFIL 313
+Q AAQSLI AF++
Sbjct: 658 EQTHAAQSLIQAFVM 672
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 48/73 (65%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ + Q+GC+LG+GG ++ M +GA IR+ PKD+ P C S DEIVQ+ G+ V+
Sbjct: 182 RLLILTAQVGCVLGKGGSVIKRMAAESGAQIRILPKDKVPVCASAFDEIVQISGSVEVVR 241
Query: 91 DALFHITSRLRET 103
AL ++ +L E
Sbjct: 242 KALQSVSQQLLEN 254
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86
+VV RLL H+ +IG ++G+GG I+S++R TG +++ ++ P C + ++ + G+
Sbjct: 33 SVVFRLLCHASRIGSVIGKGGSIISQIRLETGVKVKI--EEAVPGC---DERVITISGSD 87
Query: 87 HSVQD 91
++
Sbjct: 88 KEAEE 92
>gi|147845094|emb|CAN78473.1| hypothetical protein VITISV_026793 [Vitis vinifera]
Length = 709
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 120/281 (42%), Positives = 156/281 (55%), Gaps = 23/281 (8%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
R SPAQDAV+RV SRI I + V+ARLLV S QIGCLLG+GG I++EMR+ +GA
Sbjct: 393 RISPAQDAVLRVQSRIVRAIPDSKEKTVIARLLVSSTQIGCLLGKGGAIIAEMRKLSGAH 452
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KDQ P+C S ++E+VQ+ G + +VQ+AL IT+RLR F R + H P
Sbjct: 453 IRILGKDQIPKCASENEEVVQINGEFEAVQEALLQITTRLRHHHF---RDAFSVNHPSNP 509
Query: 121 PFPEMPP--PPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDHQAAFSHGMDPMVP 177
F + P PP+ R + PG Y S +GP FH D +G P HG
Sbjct: 510 AFTDQVPPFPPYLARREFSPPGMY-SNLGPSFHKFD-AVGVLHP--------HG---GFH 556
Query: 178 PNSDRIPFPYGSERPGHGPTF-DRPPSPRSWTPQG-VGGGDPRGFDASSGFTPRNRP-VE 234
P+ DR PF + R G P +R PS W QG + GG P G +G R P
Sbjct: 557 PHDDRAPFMHSIHRLGIPPHIPERKPSSAPWGHQGLIEGGVPIGLADFAGGPQRRIPGFG 616
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
GN AI+TSTT+EVV+P+ + +YGE+ L IRQ G
Sbjct: 617 GGNQQAIITSTTVEVVVPRSLVPSIYGEDGGCLRQIRQEVG 657
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ---------AVVARLLVHSQQIGCLLGRGGHIVSEMR 54
S Q A++ V R+AE E V RLLV S Q+GCLLG+GG ++ +M
Sbjct: 149 SSVQKALLLVFERMAEGESETNGGDEDSNKSPTFVVRLLVLSSQVGCLLGKGGSVIKQMS 208
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKR 109
+GA IR+ P+D+ P C SP DE+VQ+ G + + AL I+ +L R+
Sbjct: 209 AESGAQIRILPRDKLPLCASPSDELVQITGELDACKQALQSISQQLLENPPRDYDIVSTN 268
Query: 110 PGPNNGHSYLPPFP--EMPPPP 129
P ++ H + PP P E PPP
Sbjct: 269 PTGSSSHLFGPPLPRSEAQPPP 290
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 14 HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG 73
+S+ + PG VV R+L + + G ++G+GG I+S++R+ TG +RV ++ C
Sbjct: 32 YSQNQSLKISPG-TVVFRVLCPASKTGSVIGKGGTIISQIRQETGVKVRV--EETVSGC- 87
Query: 74 SPHDEIVQVIG--------NYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ +V + G N S +D ++ E + K PG N+
Sbjct: 88 --DERVVLITGSDKDTEADNEQSKEDGE---DTKAAEEVSDTKEPGEND 131
>gi|357476219|ref|XP_003608395.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355509450|gb|AES90592.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 616
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 122/331 (36%), Positives = 173/331 (52%), Gaps = 57/331 (17%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEP--------GQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R SPAQ+AV+ V R E E +V A+L+V S Q+G LLG+GG IVSEM
Sbjct: 324 RFSPAQEAVVLVFCRSIECCIEKVVDWRSNKESSVTAQLVVPSNQVGVLLGKGGAIVSEM 383
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
R+AT SIR+ + P+C S +D++VQ+ G +V+DAL++ T RLR+ IF + +
Sbjct: 384 RKATWTSIRITRNGEVPKCASFNDQVVQISGELPNVRDALYNATRRLRDHIFLIAQNSGG 443
Query: 114 NGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
G P RPR S P +G + GPS + S MD
Sbjct: 444 TG------------PYRRPRD------SIPLGLGGQSVVGSNHGPSIH-----SLSQSMD 480
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR-GFDASSGFTPRNRP 232
+ S G R S W P+ VGG + R DA PR
Sbjct: 481 HLTL-----------SRNSG------RSASSGVWAPKVVGGKNSRYTDDAGRRLNPREGD 523
Query: 233 VE--SGNH-----AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
+E SG++ AAI+T+TT+E+++P + VYGEN SNL +RQISGA VV ++P+P
Sbjct: 524 LELASGSNTVIGNAAIITNTTVEIMLPNDIIGSVYGENGSNLDQLRQISGAKVVFHEPRP 583
Query: 286 GATE-GVVMVSGTSDQMRAAQSLIHAFILCG 315
G ++ +++SGT D+ +AAQSL+ A+IL G
Sbjct: 584 GTSDRAKIVLSGTPDETQAAQSLLQAYILNG 614
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 63/103 (61%), Gaps = 8/103 (7%)
Query: 7 QDAVMRVHSRIAEI------GFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
Q+A+++V RI ++ G G VV+ RLLV++ Q G ++G+GG +V+++R TG
Sbjct: 84 QEALLKVFERILDVAAAESDGNGVGDRVVSCRLLVNAGQAGGVIGKGGMVVAKIRADTGC 143
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
IRV D+ P C P DEI+++ G SV+ AL + RL++
Sbjct: 144 RIRVL-NDKLPACTKPSDEIIEIQGIASSVKKALVAVAGRLQD 185
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
VV RLL H+ +IG +G+ G ++ +++ TGA IR+ D AP P IV VI N +
Sbjct: 20 VVFRLLCHASRIGAFIGKSGSVIKSLQQLTGARIRI---DDAP-VDCPERVIV-VIVNLN 74
Query: 88 SV-------QDALFHITSRL 100
Q+AL + R+
Sbjct: 75 GDGDVSLNPQEALLKVFERI 94
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 65
Q V R+L +IG +LG+GG IV ++ TGA+I V P
Sbjct: 264 QEVTFRILCSGDRIGAVLGKGGSIVKALQNETGANISVGP 303
>gi|255563372|ref|XP_002522689.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538165|gb|EEF39776.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 698
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 182/375 (48%), Gaps = 103/375 (27%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
R+S AQ AV+ V SR L+V S Q+GCLLG+GG I+S+MR+ TG SI
Sbjct: 363 RYSAAQKAVVLVFSR---------------LVVPSNQVGCLLGKGGIIISDMRKTTGTSI 407
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQ-----------DALFH-------------IT 97
++ DQ P+C ++++VQ+ G++ +V+ D LF IT
Sbjct: 408 KILAGDQLPKCVPENEQVVQISGDFMNVKDAVYHVTGRLRDNLFSSALSTPVTRSTTVIT 467
Query: 98 S-----RLRETIFPMKRPGPNN-----GHSYLPPFPEMPPPPFR-PRHNPA--------- 137
RL+E + + N G ++ P P R R +P
Sbjct: 468 EASPYGRLKEPLRDAFKEPLNTFREPLGDAFRDPLRAAMRGPLRDARRDPLRDSFGDTLR 527
Query: 138 --------------SPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRI 183
+P + P+G HS++R +Q DH SH
Sbjct: 528 DQLRDTLKEPPRGPAPYNLHPPIGVSHSLNRHNTLTQSMDH-LGLSH------------- 573
Query: 184 PFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVE--SGNHAA 240
+ D P SPR W Q + G +PR DAS GFT +E SG+ +A
Sbjct: 574 -------------SLDGPISPRLWASQTMAGINPRVVPDASRGFTSFKGGLELGSGSKSA 620
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
I+T+TT+E+ +P+ + VYGEN+SNL+ +RQISGA V+V++P+ G+++ ++++SGT D+
Sbjct: 621 IVTNTTVEIRVPENVIGSVYGENDSNLTRLRQISGAKVIVHEPRLGSSDRIIVISGTPDE 680
Query: 301 MRAAQSLIHAFILCG 315
+AAQSL+ AFIL G
Sbjct: 681 TQAAQSLLQAFILTG 695
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPG---------QAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
S AQ+ ++RV RI E+ E V R+L S+Q G ++G+GG +V ++R
Sbjct: 125 SRAQEGLIRVFERILEVAAESDGINVVAGGGGVVSCRMLAGSKQAGSVIGKGGKVVEKIR 184
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ G IRV D+ P C P++E++++ G+ SV+ AL + SR + P+ +P +
Sbjct: 185 KDCGVKIRVL-TDKLPVCAGPNEEMIEIEGDILSVKKALIAV-SRCLQDCQPVDKPRVGS 242
Query: 115 GHSYLPPFPEMPPPPFR 131
Y P+ P P R
Sbjct: 243 SK-YFEAVPQEPLPEMR 258
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
RLL H+ +IG ++G+ G I+ ++++ +GA IR+ +++P D ++ VI V
Sbjct: 59 RLLCHASRIGGIIGKSGTIIKQLQQQSGAKIRI---EESP--AESSDRVITVIAEGQIV 112
>gi|294462548|gb|ADE76820.1| unknown [Picea sitchensis]
Length = 340
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 108/324 (33%), Positives = 153/324 (47%), Gaps = 51/324 (15%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQ--AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
R SP +AV+ + + +E E G+ + R LV S IGCLLG+GG I+SEMR+ T A
Sbjct: 55 RISPTLEAVLHLQFKTSEKSIEEGKEGVITTRFLVPSNSIGCLLGKGGSIISEMRKRTRA 114
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ KD P+C ++E+VQVIG ++AL I +RLR +F + G N G S +
Sbjct: 115 NIRIMSKDNIPKCAGENEELVQVIGEVDVAREALIQIATRLRSNVFKDQDGGSNAG-SVV 173
Query: 120 PPFPEMPPPPFRPRHNPASP---GSYPSPVGPFHSMDRGMGPSQPFDHQAA--FSHGMDP 174
P P R P S G G +S+ PS + A+ +S
Sbjct: 174 P-----PSLSLYGRGVPDSGFGRGDELGSTGRMYSL-----PSLGLEGTASGRYSSASYG 223
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+ + YGS +F +P P GV A SG
Sbjct: 224 SLGGVQNGGAGGYGSF-----SSFSTSRAPAGGLPAGV---------AKSG--------- 260
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
+T+EV IP + + G SN+S IR+ISGA V +++ KPG T+ VV +
Sbjct: 261 ----------STVEVTIPNKSVGSILGRGGSNISQIREISGAKVKLHESKPGGTDRVVEI 310
Query: 295 SGTSDQMRAAQSLIHAFILCGVTS 318
SGT +Q AAQSL+ AF + G S
Sbjct: 311 SGTPEQTHAAQSLLQAFAMSGQNS 334
>gi|302803919|ref|XP_002983712.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
gi|300148549|gb|EFJ15208.1| hypothetical protein SELMODRAFT_445677 [Selaginella moellendorffii]
Length = 668
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 99/322 (30%), Positives = 149/322 (46%), Gaps = 71/322 (22%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+AV + ++ + G E + VV RLLV S +GCLLG+GG+I+SEMR +T A IRV
Sbjct: 404 SPAQEAVFHIQDKLRDDGGETSERVVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRV 463
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
++Q P C +DE+VQV+G +DAL ITSRLR +
Sbjct: 464 LDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANL------------------- 504
Query: 124 EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRI 183
+R + + + Y P + G+ SQP
Sbjct: 505 ------YREKTDRSDDYGYQRSTSPLSNF--GLQASQP---------------------- 534
Query: 184 PFPYGSERPGHGPTFDRPPSPRSW----TPQGVGGGDPR-----GFDASSGFTPRNRPVE 234
P P SP SW T +G G PR G + S G +
Sbjct: 535 ------------PGIQAPRSPPSWLLQQTERGAYNGLPRLTSYAGIERSYGLAGDRSALP 582
Query: 235 SG-NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
+G + +++TST I+V+IP++ + V G+N NL+ I ++SGA V + D + ++
Sbjct: 583 TGLTNLSVVTSTKIDVLIPEVTFSAVLGQNGDNLTQISKMSGAKVTLADGCTATGDRLIE 642
Query: 294 VSGTSDQMRAAQSLIHAFILCG 315
+SGT DQ A++++ AF G
Sbjct: 643 ISGTPDQTNIAKTVVEAFAASG 664
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 5 PAQDAVMRVHSRIAE-------------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVS 51
PAQ A+ +VHSRI + + + + VV R+LV Q+GCLLG+ G I+
Sbjct: 153 PAQLALFKVHSRILDADKYEDDLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIE 212
Query: 52 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP- 110
+MR TG+ IR+ P++Q P C P DE+VQV+G+ SV+ AL I++RL + P RP
Sbjct: 213 QMREETGSQIRILPREQLPVCALPTDEVVQVVGDRPSVKRALNAISTRLLDNP-PKDRPS 271
Query: 111 ------GPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
G G S FP P+ P+H +P
Sbjct: 272 SASFQSGNFGGGSRSSGFP--ASEPYIPQHTSLAP 304
>gi|302814720|ref|XP_002989043.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
gi|300143144|gb|EFJ09837.1| hypothetical protein SELMODRAFT_10869 [Selaginella moellendorffii]
Length = 630
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 99/318 (31%), Positives = 153/318 (48%), Gaps = 44/318 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+AV + ++ + G E + VV RLLV S +GCLLG+GG+I+SEMR +T A IRV
Sbjct: 344 SPAQEAVFHIQDKLRDDGGETSERVVTRLLVPSNHVGCLLGKGGNIISEMRNSTRAIIRV 403
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
++Q P C +DE+VQV+G +DAL ITSRLR +
Sbjct: 404 LDREQLPLCALDNDEVVQVLGEIRVARDALVQITSRLRANL------------------- 444
Query: 124 EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFS----HGMDPMVPPN 179
+R + + + Y P + G+ SQP QA S ++PP
Sbjct: 445 ------YREKTDRSDDYGYQRSTSPLSNF--GLQASQPPGIQAPRSPPSWLLQQVLIPPP 496
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSW--TPQGVGGGDPRGFDASSGFTPRNRPVESG- 236
S + S P DR S + W T + + + F + P +
Sbjct: 497 S------FKSRLTSFLPCLDRKRSLQ-WFATAYKLCWNREKLWLGRRSFGLADWPYQVSH 549
Query: 237 ---NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
H +++TST I+V+IP++ + V G+N NL+ I ++SGA V + D + ++
Sbjct: 550 SIQRHLSVVTSTKIDVLIPEVTFSAVLGQNGDNLTQISKMSGAKVTLADGCTATGDRLIE 609
Query: 294 VSGTSDQMRAAQSLIHAF 311
+SGT DQ A++++ AF
Sbjct: 610 ISGTPDQTNIAKTVVEAF 627
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 83/155 (53%), Gaps = 23/155 (14%)
Query: 5 PAQDAVMRVHSRIAE-------------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVS 51
PAQ A+ +VHSRI + + + + VV R+LV Q+GCLLG+ G I+
Sbjct: 93 PAQLALFKVHSRILDADKYEDDLDDSDSVEEDLSEKVVTRMLVPENQVGCLLGKKGRIIE 152
Query: 52 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP- 110
+MR TG+ IR+ P++Q P C P DE+VQV+G+ SV+ AL I++RL + P RP
Sbjct: 153 QMREETGSQIRILPREQLPVCALPTDEVVQVVGDRPSVKRALNAISTRLLDNP-PKDRPS 211
Query: 111 ------GPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
G G S FP P+ P+H +P
Sbjct: 212 SASFQSGNFGGGSRSSGFP--ASEPYIPQHTSLAP 244
>gi|42573788|ref|NP_974990.1| HEN4 isoform 2 [Arabidopsis thaliana]
gi|332010500|gb|AED97883.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 824
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 155/301 (51%), Gaps = 37/301 (12%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ G + +V++A+FHITSRLR+++F MK
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK------- 624
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 625 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 684
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 685 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 744
Query: 217 PRGFDASSGFTPRNRP---VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQI 273
PRG +SG R + SG+ +AI+T+TT+E+ +P M+ VYGE NL +RQ+
Sbjct: 745 PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQV 804
Query: 274 S 274
S
Sbjct: 805 S 805
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
RLL +G ++G+ G+++ +++++TGA IRV + P GSP D ++ +I S
Sbjct: 50 RLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRV----EEPPSGSP-DRVITIIAQADS 102
>gi|297596401|ref|NP_001042525.2| Os01g0235800 [Oryza sativa Japonica Group]
gi|56783855|dbj|BAD81267.1| HEN4 -like [Oryza sativa Japonica Group]
gi|255673037|dbj|BAF04439.2| Os01g0235800 [Oryza sativa Japonica Group]
Length = 449
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 152/314 (48%), Gaps = 49/314 (15%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+A++ V +I + RL+V Q+GCLLG+GG I++EMR+ +GA I V
Sbjct: 175 SPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIV 234
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPP 121
KD+ P+ +DE+VQ+ G ++Q+AL IT+RLR +F M PN PP
Sbjct: 235 LSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRMASTVPN----VQPP 290
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
F + P F GSY G S+ + P+ P H+ +D M P
Sbjct: 291 F-GLVDPQF---------GSY---AGNHDSISPRIFPNVPQFHKDFIGRPLDEMSAP--- 334
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGG-GDPRGFDASSGFTPRNRPVESG-NHA 239
WT +G+ GDP G R G
Sbjct: 335 -------------------------WTMKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQP 369
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
+I+++ T +V++P+L + + GE+ L+ IR+ SGA + V DP A + +++SGT D
Sbjct: 370 SIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPD 429
Query: 300 QMRAAQSLIHAFIL 313
QM AA+SLI AF+L
Sbjct: 430 QMHAARSLIQAFVL 443
>gi|222618061|gb|EEE54193.1| hypothetical protein OsJ_01028 [Oryza sativa Japonica Group]
Length = 748
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 152/314 (48%), Gaps = 49/314 (15%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+A++ V +I + RL+V Q+GCLLG+GG I++EMR+ +GA I V
Sbjct: 474 SPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIV 533
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPP 121
KD+ P+ +DE+VQ+ G ++Q+AL IT+RLR +F M PN PP
Sbjct: 534 LSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRMASTVPN----VQPP 589
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
F + P F GSY G S+ + P+ P H+ +D M P
Sbjct: 590 FG-LVDPQF---------GSY---AGNHDSISPRIFPNVPQFHKDFIGRPLDEMSAP--- 633
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGG-GDPRGFDASSGFTPRNRPVESG-NHA 239
WT +G+ GDP G R G
Sbjct: 634 -------------------------WTMKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQP 668
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
+I+++ T +V++P+L + + GE+ L+ IR+ SGA + V DP A + +++SGT D
Sbjct: 669 SIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPD 728
Query: 300 QMRAAQSLIHAFIL 313
QM AA+SLI AF+L
Sbjct: 729 QMHAARSLIQAFVL 742
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 48/103 (46%), Gaps = 9/103 (8%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQA--------VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
A A++ V RI E G V RLLV Q+G LLG+ G ++ +M +
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
IRV KD+ P C P DE+ Q+ G SV+ L + L
Sbjct: 305 CCEIRV-SKDKLPLCALPRDELCQITGELDSVRKGLNTVAQLL 346
>gi|218187831|gb|EEC70258.1| hypothetical protein OsI_01061 [Oryza sativa Indica Group]
Length = 722
Score = 137 bits (346), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/314 (32%), Positives = 152/314 (48%), Gaps = 49/314 (15%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+A++ V +I + RL+V Q+GCLLG+GG I++EMR+ +GA I V
Sbjct: 448 SPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIV 507
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPP 121
KD+ P+ +DE+VQ+ G ++Q+AL IT+RLR +F M PN PP
Sbjct: 508 LSKDKIPKGVPENDEVVQISGASEAIQEALMQITARLRNHLFRDRMASTVPN----VQPP 563
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
F + P F GSY G S+ + P+ P H+ +D M P
Sbjct: 564 FG-LVDPQF---------GSY---AGNHDSISPRIFPNVPQFHKDFIGRPLDEMSAP--- 607
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGG-GDPRGFDASSGFTPRNRPVESG-NHA 239
WT +G+ GDP G R G
Sbjct: 608 -------------------------WTMKGMQVVGDPISLPDIPGMAHRGMGGFPGPGQP 642
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
+I+++ T +V++P+L + + GE+ L+ IR+ SGA + V DP A + +++SGT D
Sbjct: 643 SIVSTITADVMVPKLVLPSLCGEDGGCLNRIREFSGAKITVADPMGNAMDTAILISGTPD 702
Query: 300 QMRAAQSLIHAFIL 313
QM AA+SLI AF+L
Sbjct: 703 QMHAARSLIQAFVL 716
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 81/340 (23%), Positives = 126/340 (37%), Gaps = 73/340 (21%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQA--------VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
A A++ V RI E G V RLLV Q+G LLG+ G ++ +M +
Sbjct: 245 AVKAILLVFDRIFVNEMENGTGDASGERNHVSLRLLVLDSQVGWLLGKNGSVIKQMSTDS 304
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------RETIFPMKRPG 111
IRV KD+ P C P DE+ Q+ G SV+ L + L + G
Sbjct: 305 CCEIRV-SKDKLPLCALPRDELCQITGELDSVRKGLNTVAQLLFTHPPKESDVLGAHNSG 363
Query: 112 PNNGHSYLPPFPE--------MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFD 163
PN H LP FPE +PP P R +S ++ +
Sbjct: 364 PNVAH--LPNFPEALMHGHGSVPPEPLTFRLLCSSDKVGGIIGKGGNN-------IKSIQ 414
Query: 164 HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDAS 223
+ + VP + DRI F G PG
Sbjct: 415 NDTGCEIKVLDTVPKSEDRIVFISGPAHPG------------------------------ 444
Query: 224 SGFTPRNRPVESGNHAAILTSTTIE------VVIPQLYMAHVYGENNSNLSHIRQISGAN 277
G +P + + TS T E +++ + + G+ S ++ +R++SGA+
Sbjct: 445 DGISPAQNAILHVQRKIVPTSNTKEGPAICRLIVSPNQVGCLLGKGGSIIAEMRKLSGAH 504
Query: 278 VVV--NDPKPGAT---EGVVMVSGTSDQMRAAQSLIHAFI 312
++V D P + VV +SG S+ ++ A I A +
Sbjct: 505 IIVLSKDKIPKGVPENDEVVQISGASEAIQEALMQITARL 544
>gi|294464716|gb|ADE77865.1| unknown [Picea sitchensis]
Length = 348
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/312 (31%), Positives = 154/312 (49%), Gaps = 58/312 (18%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPAQ+A++ + S+I ++G + + +LL+ S Q GCLLG+GG I+SEMR+ T A+IR+
Sbjct: 82 SPAQEALLHIQSQIVDLGPDKDGVITTKLLIPSNQTGCLLGKGGAIISEMRKQTRANIRI 141
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF-PMKRPGPNNGHSYLPPF 122
P++ P C DE+VQ++G+ + + AL +TSRLR I + GP +L
Sbjct: 142 LPREDLPPCALDSDEMVQIVGDIRAARAALVQVTSRLRSFIHREIGISGP-----FLSSS 196
Query: 123 PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDR 182
P R R P+SPG SP F + R +
Sbjct: 197 SAPDPSSKR-RLEPSSPGRSYSPGLGFQAGSRSL-------------------------- 229
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG-NHAAI 241
P +W + + G + +D + T + P SG + A +
Sbjct: 230 ---------------------PDAWPSKEISGRNLPEYDERA--TKQGGPKGSGISTAGL 266
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
+T TT+EVVIP+ +A + + ++ I QISGA V + + +PG ++ V+ +SGT +Q
Sbjct: 267 VTKTTVEVVIPEHAIAPLIANSGKGVAQIAQISGAKVNLLEVRPG-SDKVIEISGTPEQT 325
Query: 302 RAAQSLIHAFIL 313
AAQ L+ AFIL
Sbjct: 326 HAAQGLLQAFIL 337
>gi|28261405|gb|AAO37829.1| HEN4 isoform 2 [Arabidopsis thaliana]
Length = 836
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/301 (34%), Positives = 154/301 (51%), Gaps = 37/301 (12%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 524 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 583
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ + +V++A+FHITSRLR+++F MK
Sbjct: 584 GAAIQILKVEQNPKCISENDQVVQITEEFPNVREAIFHITSRLRDSVFSNSMK------- 636
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 637 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 696
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 697 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 756
Query: 217 PRGFDASSGFTPRNRP---VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQI 273
PRG +SG R + SG+ +AI+T+TT+E+ +P M+ VYGE NL +RQ+
Sbjct: 757 PRGLSDASGGLSSARAGHVLGSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQV 816
Query: 274 S 274
S
Sbjct: 817 S 817
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
>gi|9759415|dbj|BAB09870.1| unnamed protein product [Arabidopsis thaliana]
Length = 833
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 104/310 (33%), Positives = 154/310 (49%), Gaps = 46/310 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFE------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ A+M + SR+ E+ P ++ ARL+V + QIGC+LG+GG IVSEMR+ T
Sbjct: 512 SPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRKTT 571
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF--PMKRPGPNNG 115
GA+I++ +Q P+C S +D++VQ+ G + +V++A+FHITSRLR+++F MK
Sbjct: 572 GAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSMK------- 624
Query: 116 HSYLPPFPEMPPPPFRPRH--NPASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH 170
+S + F R NP S GS+ S P S+ R S ++ ++
Sbjct: 625 NSLAKSSSALTTERFYDRQSDNPLSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNY 684
Query: 171 ----GMDPMVPPNS---DRI-PFPYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GD 216
G DP + P DR P S G T D + T P +
Sbjct: 685 SRSVGTDPYIRPEDPFPDRFNPSAGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAA 744
Query: 217 PRGFDASSGFTPRNRP------------VESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
PRG +SG R SG+ +AI+T+TT+E+ +P M+ VYGE
Sbjct: 745 PRGLSDASGGLSSARAGHVLGSLHARLVFSSGHKSAIVTNTTVEIRVPANAMSFVYGEQG 804
Query: 265 SNLSHIRQIS 274
NL +RQ+S
Sbjct: 805 YNLEQLRQVS 814
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 21/154 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A+++V +A VV RLL S G ++G+GG +V +R+ TG I +
Sbjct: 128 SKAQGALIKVFELLA--AEADSDTVVCRLLTESSHAGAVIGKGGQMVGSIRKETGCKISI 185
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL------------------RETIF 105
++ P C DE+V+V GN +V+ AL I+ L +E
Sbjct: 186 RIEN-LPICADTDDEMVEVEGNAIAVKKALVSISRCLQNCQSIDKVRMVGNRPLEKEFQA 244
Query: 106 PMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+ RP LP E+ P +R R++ P
Sbjct: 245 SLHRPIETIIQESLPRSVEVNPYDYRLRNDEIFP 278
>gi|357128987|ref|XP_003566150.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 729
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/316 (31%), Positives = 147/316 (46%), Gaps = 53/316 (16%)
Query: 4 SPAQDAVMRVHSRIAE-IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
SPAQ+A++ V RI A ++RL+V Q+GCLLG+GG I++EMR+ + A I
Sbjct: 455 SPAQNAILHVQRRITPPTANNKEGAAISRLIVSPNQVGCLLGKGGSIIAEMRKLSKAHIV 514
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLP 120
V KD+ P+ DE+VQ+ G+ ++Q+AL IT+RLR +F M GPN P
Sbjct: 515 VLSKDKIPKGVQESDEVVQITGDSEAIQEALMQITARLRNHLFRDRMAAMGPN----MQP 570
Query: 121 PFPEMPPP--PFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPP 178
PF + P F H SP YP+ FH G
Sbjct: 571 PFGSLDPQFGAFAGSHESTSPRIYPN-ASQFHKDFMG----------------------- 606
Query: 179 NSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGG-GDPRGFDASSGFTPRNRPVESGN 237
RP D P+P W +G+ GDP G R SG
Sbjct: 607 ------------RP-----LDEMPAP--WNAKGMRDVGDPMSISGMPGMPHRGIGGFSGA 647
Query: 238 HAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
+ + + T ++++P+ + + G + L+ IR+ SGA + +P A + M+SGT
Sbjct: 648 GHSSMPNITRDIMVPRFVIPALCGHDGGCLNMIREFSGAMITFTEPIADAADTPFMISGT 707
Query: 298 SDQMRAAQSLIHAFIL 313
DQM AA+SLI AF+L
Sbjct: 708 LDQMHAARSLIQAFVL 723
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 8 DAVMRVHSRI--AEIGFEPGQA------VVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+A++ V RI EIG E G V RLLV Q+G LLG G ++ +M +G
Sbjct: 204 NAILHVFDRIFITEIGNESGDPSGERTPVSFRLLVLDSQVGWLLGNRGSVIKQMSADSGC 263
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
IRV K++ P C DE+ Q+ G SV+ L + L
Sbjct: 264 EIRV-SKEKLPLCALLKDELCQITGELDSVRKGLNAVAQVL 303
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
DA+M H+ + P + + RLL S ++G ++G+GG+ + +++ TG I++ +
Sbjct: 381 DALMHSHASV------PPEPLTFRLLCSSDKVGSIIGKGGNNIKTIQKDTGCEIKIL--E 432
Query: 68 QAPRCGSPHDEIVQVIGNYH------SVQDALFHITSRL 100
P+ D ++ + G H Q+A+ H+ R+
Sbjct: 433 TVPKS---EDRVIVISGPAHPGDGISPAQNAILHVQRRI 468
>gi|54290950|dbj|BAD61631.1| putative HEN4 [Oryza sativa Japonica Group]
Length = 662
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 57/310 (18%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++G + + RLLV S +I C GR G + S+++R T A++++
Sbjct: 400 PAQEALLHLQTHIVDLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQRQTSANVQIL 458
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P+ P C DE++Q++G + +DAL IT++LR + F + PGPN +
Sbjct: 459 PRQALPSCALESDELIQIVGEIRAARDALVQITAKLR-SYFYREIPGPNQLGNITV---- 513
Query: 125 MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
H SP SP GP+ D IP
Sbjct: 514 ---------HGSISPAK-GSPRGPYQGSD-----------------------------IP 534
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA-ILT 243
P ++ H P SW + GGG F+ S R + A ++T
Sbjct: 535 MP-SYQQAQHVPA--------SW--KDSGGGANMSFEQGSNINDDMRQSAAKRFAVPLVT 583
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+EVVIP+ +A + S L+ I ++SGA V + D +P A E VV +SGT +Q
Sbjct: 584 RSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQADK 643
Query: 304 AQSLIHAFIL 313
AQSL+ FIL
Sbjct: 644 AQSLLQGFIL 653
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEI----GFEPGQ------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E G E G+ V RL+V +GCLLG+GG
Sbjct: 147 SPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGG 206
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P+DQ PRC S +E+VQV+G + V+ A+ I+ RL+E++
Sbjct: 207 KIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLKESL 264
>gi|125555220|gb|EAZ00826.1| hypothetical protein OsI_22856 [Oryza sativa Indica Group]
Length = 693
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/310 (30%), Positives = 144/310 (46%), Gaps = 57/310 (18%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++G + + RLLV S +I C GR G + S+++R T A++++
Sbjct: 400 PAQEALLHLQTHIVDLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQRQTSANVQIL 458
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P+ P C DE++Q++G + +DAL IT++LR + F + PGPN +
Sbjct: 459 PRQALPSCALESDELIQIVGEIRAARDALVQITAKLR-SYFYREIPGPNQLGNITV---- 513
Query: 125 MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
H SP SP GP+ D IP
Sbjct: 514 ---------HGSISPAK-GSPRGPYQGSD-----------------------------IP 534
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA-ILT 243
P ++ H P SW + GGG F+ S R + A ++T
Sbjct: 535 MP-SYQQAQHVPA--------SW--KDSGGGANMSFEQGSNINDDMRQSAAKRFAVPLVT 583
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+EVVIP+ +A + S L+ I ++SGA V + D +P A E VV +SGT +Q
Sbjct: 584 RSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQADK 643
Query: 304 AQSLIHAFIL 313
AQSL+ FIL
Sbjct: 644 AQSLLQGFIL 653
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEI----GFEPGQ------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E G E G+ V RL+V +GCLLG+GG
Sbjct: 147 SPAQEALLMVHRRILETEPDDGDEDGEYGPRAKDARDRGKVTTRLIVPRLHVGCLLGKGG 206
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P+DQ PRC S +E+VQV+G + V+ A+ I+ RL+E++
Sbjct: 207 KIIEQMRAETKTHIRILPRDQHTPRCVSLSEEVVQVVGEGNCVKKAVAIISDRLKESL 264
>gi|226530329|ref|NP_001151982.1| nucleic acid binding protein [Zea mays]
gi|195651499|gb|ACG45217.1| nucleic acid binding protein [Zea mays]
gi|224029689|gb|ACN33920.1| unknown [Zea mays]
gi|413947861|gb|AFW80510.1| nucleic acid binding protein [Zea mays]
Length = 705
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 99/317 (31%), Positives = 153/317 (48%), Gaps = 62/317 (19%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
SPAQ+A++ V +I + + RL+V Q+GC+LG+GG I++EMR+ +GA I
Sbjct: 438 SPAQNAILHVQRKIMLPSSDKKEGPATCRLIVSGNQVGCVLGKGGSIIAEMRKLSGAFIV 497
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP--GPNNGHSYLP 120
V KD+ PR HDE++Q+ G+ ++Q+AL +T+RLR +F + P GPN P
Sbjct: 498 VLSKDKIPRGVPEHDEVIQINGSCEAIQEALMQVTARLRNHLFRDRMPAVGPN----MRP 553
Query: 121 PFPEMPPP--PFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA--FSHGMDPMV 176
PF + P PF H +S FH G +P D AA GM +
Sbjct: 554 PFGLLDPQFGPFSGNHESSS---------LFHKDFMG----RPLDGIAAPWTVKGMRDLS 600
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG 236
P S S+ PG G + GF +P
Sbjct: 601 DPVSI-------SDIPGA------------------------GHREAGGFPGPGQP---- 625
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+++ + T EV++P+L + + GE+ L IR+ S A + V +P A + V++SG
Sbjct: 626 ---SMMPNLTAEVLVPRLVIPVLCGEDGGCLDRIREFSEAKITVAEPTADAMDTAVLISG 682
Query: 297 TSDQMRAAQSLIHAFIL 313
T +QM AA+SL+ AF++
Sbjct: 683 TPEQMHAARSLVEAFVM 699
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 6 AQDAVMRVHSRI--AEIGFEPGQAVVA------RLLVHSQQIGCLLGRGGHIVSEMRRAT 57
A AV V RI E E G A A R+LV Q G LLG+GG +V +M
Sbjct: 203 ALKAVSLVFDRIFATEGNNETGNASAASAPVSLRMLVLYSQAGWLLGKGGSVVKQMAADN 262
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
G IRV KD P C +D++ Q+ G SV+ L ++ L
Sbjct: 263 GCEIRVL-KDNLPSCALLNDKLCQITGEIDSVRKGLNAVSEVL 304
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+++ R+L ++G ++G+GG+IV ++ TG I+V D P+ D I+ + G
Sbjct: 376 ESLSFRMLCPQDKVGSIIGKGGNIVKTIQNDTGCEIKVL--DTVPKT---DDRIISISGP 430
Query: 86 YH------SVQDALFHITSRLRETIFPM--KRPGP 112
H Q+A+ H+ R+ + P K+ GP
Sbjct: 431 AHPSDGISPAQNAILHVQ---RKIMLPSSDKKEGP 462
>gi|242055819|ref|XP_002457055.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
gi|241929030|gb|EES02175.1| hypothetical protein SORBIDRAFT_03g000560 [Sorghum bicolor]
Length = 716
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 148/313 (47%), Gaps = 53/313 (16%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
SPAQ+A++ V +I + + + RL+V + Q+GC+LG+GG I++EMR+ +GA I
Sbjct: 448 SPAQNAILHVQRKIMLPTSDKKEGPAICRLIVSANQVGCVLGKGGSIIAEMRKLSGAFII 507
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
V KD+ PR HDE+VQ+ G+ ++Q+AL IT+RLR +F + R P G + PPF
Sbjct: 508 VLSKDKIPRGVPEHDEVVQISGSCEAIQEALMQITARLRNHLFRVDRM-PAMGPNMRPPF 566
Query: 123 PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDR 182
G S GPF G S H+ +D + P
Sbjct: 567 -----------------GLLDSQFGPFA----GNHESPSLFHKDFMGRPLDGISAP---- 601
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGG-GDPRGFDASSGFTPRNRPVESG-NHAA 240
WT +G+ DP G R SG +
Sbjct: 602 ------------------------WTVKGMRDLSDPLSISDIPGAGHREAGGFSGPGQPS 637
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++ + T EV++P+L + + E+ L IR+ S A + V +P A + V++SGT DQ
Sbjct: 638 MMPNLTAEVLVPRLIIPALCSEDGGCLDRIREFSEAKITVAEPIADAMDIPVLISGTPDQ 697
Query: 301 MRAAQSLIHAFIL 313
M AA+SL+ AF++
Sbjct: 698 MHAARSLVQAFVM 710
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 9/103 (8%)
Query: 6 AQDAVMRVHSRIAEIG--FEPGQAVVA------RLLVHSQQIGCLLGRGGHIVSEMRRAT 57
A A+ V RI G E G A A RLLV Q G LLG+GG ++ +M
Sbjct: 214 ALKAISLVFDRIFAAGDNNETGNASAASTPVSLRLLVLYSQAGWLLGKGGSVIKQMSADN 273
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
G IRV +D P C +D++ Q+ G SV+ L ++ L
Sbjct: 274 GCEIRVL-RDNLPSCALLNDKLCQITGEIDSVRKGLNAVSELL 315
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 16/97 (16%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P +++ R+L ++G ++G+GG+IV +++ TG I+V D P+ D I+ +
Sbjct: 384 PIESLSFRMLCPQDKVGSIIGKGGNIVKTIQKDTGCEIKVL--DTVPKS---EDRIISIS 438
Query: 84 GNYH------SVQDALFHITSRLRETIFPM--KRPGP 112
G H Q+A+ H+ R+ + P K+ GP
Sbjct: 439 GPAHPSDGISPAQNAILHVQ---RKIMLPTSDKKEGP 472
>gi|308080276|ref|NP_001183239.1| hypothetical protein [Zea mays]
gi|238010240|gb|ACR36155.1| unknown [Zea mays]
gi|414884425|tpg|DAA60439.1| TPA: hypothetical protein ZEAMMB73_126154 [Zea mays]
Length = 647
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 147/321 (45%), Gaps = 34/321 (10%)
Query: 7 QDAVMRVHSRIAEI------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
Q A++ + R+ E+ FE + R+LV Q GCL+G GG I+ EM TGA
Sbjct: 341 QSALLLIFDRMMEMETNTHSTFEKASQFLVRVLVLKNQFGCLVGLGGSIIKEMVNTTGAR 400
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
I++ + P C S + +VQ+ G ++++AL + +LR IF NN H
Sbjct: 401 IQILDDTEIPACASTFELVVQITGELMNIRNALSLVFWKLRNHIFS-NETDYNNSHISSS 459
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
E N S + S + +S+D G DH++ S+G+D + S
Sbjct: 460 EIAE---------SNATSQANIYSTIQ--YSVDNG----HKVDHRSPLSYGVDSVEKSFS 504
Query: 181 DRIPFPYGSERP--GHGPTFDRPPS----PRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
D ++P G+G + S P W G+ + SS N V
Sbjct: 505 DLELSSSEIQKPDNGNGVRINNSDSGIQNPSDW--NGIVTNNLNDGIISS---DENNLVR 559
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
HAAI T T E + + VYG+N SNL+ + ++SGA+++V +P E +++V
Sbjct: 560 GAEHAAI-TRITYETAVSGSILTLVYGDNGSNLAKLTEVSGADIIVYNPPSEGNEAMIVV 618
Query: 295 SGTSDQMRAAQSLIHAFILCG 315
SG DQ ++AQ L+ IL G
Sbjct: 619 SGPPDQAQSAQRLLVELILQG 639
>gi|326490983|dbj|BAK05591.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 688
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/313 (28%), Positives = 144/313 (46%), Gaps = 61/313 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++G + + RLLV S +I C GR G + S+++R T A++++
Sbjct: 424 PAQEALLHIQTFIVDLGPDKDNIITTRLLVPSSEIACFEGRDGSL-SDIQRQTSANVQIL 482
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P+++ P C DE++Q++G + ++AL +T++LR SY+ + E
Sbjct: 483 PREELPSCALESDELIQIVGEIRAARNALMQVTTKLR---------------SYI--YRE 525
Query: 125 MPPPPFR---PRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
MP P H SP SP G + D M P QA
Sbjct: 526 MPAPIQIGGINVHGSISPAK-GSPRGLYAGNDLPM----PIYQQA--------------- 565
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA- 240
P SW + G F+ S R + +A
Sbjct: 566 -------------------PQMATSWHSKDSGLSASGSFEQGSSINDDMRQSNTKRYAVP 606
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+EVVIPQ +A + S L+ I ++SGA+V + + +PG TE VV +SGT +Q
Sbjct: 607 LVTRSTLEVVIPQSAVASLSMRAGSKLAQISEMSGASVTLAEERPGVTEKVVRISGTPEQ 666
Query: 301 MRAAQSLIHAFIL 313
AQSL+ FIL
Sbjct: 667 ADKAQSLLQGFIL 679
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEI----GFEPGQ------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E G E G+ V RL+V Q +GCLLG+GG
Sbjct: 171 SPAQEALLMVHRRILETQPDDGDEDGEYGPRGKDARDRGKVTTRLIVPRQHVGCLLGKGG 230
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P++Q PRC S +++VQV+G ++V+ A+ I+ RL+E++
Sbjct: 231 KIIEQMRSETKTHIRILPREQNMPRCLSLSEKVVQVVGEGNNVKKAVAIISDRLKESL 288
>gi|449456987|ref|XP_004146230.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
gi|449517605|ref|XP_004165836.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 666
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 46/310 (14%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI ++ + V RLLV S IGCL GR G ++ EM+R TGA++ +
Sbjct: 395 PAQEALLHIQTRIVDLVPDKENIVTTRLLVPSSDIGCLEGRDGSLL-EMKRLTGANVHIV 453
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P++ P S DE+VQ+IG+ + +DAL +TSRLR + Y PF +
Sbjct: 454 PREDLPMFVSGADELVQIIGDIKAARDALVELTSRLRNCL-------------YKEPFQK 500
Query: 125 MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
P + S G + ++ ++ V +D
Sbjct: 501 DASPQVSVQSTMVSLG---------------------LEESSSNNNAAAREVHSGNDSAS 539
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR-PVESGNHAAILT 243
+ + +P G + S G + R D SG NR PV ++T
Sbjct: 540 TAFQNVQP-FGTAQLLKETGGSSNETGTQNENDRREDLPSGL---NRIPV------PLVT 589
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+EVVIP+ + + ++ + L+ I ++SGANV + + +P T+ ++ +SGT +Q
Sbjct: 590 RSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAER 649
Query: 304 AQSLIHAFIL 313
AQSL+ FIL
Sbjct: 650 AQSLLQGFIL 659
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 86/338 (25%), Positives = 134/338 (39%), Gaps = 92/338 (27%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPG---------------------------QAVVARLLVHS 36
SPAQ+A+ +H RI E PG V RL+V
Sbjct: 125 SPAQEALFLIHERILESEMSPGFNGMGYGPEDEEDDYGGVRGGGGGGCGGRVATRLVVSR 184
Query: 37 QQIGCLLGRGGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFH 95
+GCLLG+GG I+ +MR T IR+ P+D PRC S +EIVQ++G+ ++V+ A+
Sbjct: 185 MHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCISMSEEIVQIVGDTNAVKKAIAI 244
Query: 96 ITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRG 155
++SRLRE+ + H + G HS +R
Sbjct: 245 VSSRLRES------QHRDRSHFH----------------------------GRLHSPERI 270
Query: 156 MGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGG 215
P D VP N+ R+P RP PR + G
Sbjct: 271 FPPE-------------DDYVPHNARRLPMD------------GRPFRPR-MSASNTRGN 304
Query: 216 DPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
D ++ P PV +++ P + V GE+N + +R G
Sbjct: 305 DYSSRQSNFMVEPGAAPVNDNMMPFYGEDLVFKILCPIEKVDSVIGESNGIIELLRNDVG 364
Query: 276 ANVVVNDPKPGATEGVVMVS---GTSDQMRAAQ-SLIH 309
++ V+DP G+ E ++++S G D++ AQ +L+H
Sbjct: 365 VDIKVSDPVTGSNEQILIISSDEGPDDELFPAQEALLH 402
>gi|224118310|ref|XP_002317787.1| predicted protein [Populus trichocarpa]
gi|222858460|gb|EEE96007.1| predicted protein [Populus trichocarpa]
Length = 655
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 139/316 (43%), Gaps = 61/316 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI ++ + RLLV S +IGCL GR + SE+ R TGA+I +
Sbjct: 387 PAQEALLHIQTRIVDLVPDNDHITTTRLLVRSSEIGCLEGRDASL-SEIERLTGATIEIL 445
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
PK++ P S DEIVQ+ G + +DAL +TSRLR I Y F +
Sbjct: 446 PKEKLPSYLSGIDEIVQIEGEIRAARDALVEVTSRLRSYI-------------YKDVFEK 492
Query: 125 MPPPPFRP-----RHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPN 179
PPP ASP P+ GP +G P +Q S
Sbjct: 493 DLPPPVSAPGLAGGMQAASPSPTPAREGP-------IGGDPPASYQNVQSAAT------- 538
Query: 180 SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNH- 238
P P R + S R PV + N
Sbjct: 539 ----PQPSKDARGSSVEAVKQNESERR----------------------EELPVTTMNRI 572
Query: 239 -AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
++T +T+EVVIP+ + + ++ + L+ I ++SGANV + + +P E ++ +SGT
Sbjct: 573 PVTLVTRSTLEVVIPEPAVPKLITKSKNKLAQISELSGANVTLVEDRPDVKEKIIKISGT 632
Query: 298 SDQMRAAQSLIHAFIL 313
+Q AQSL+ FIL
Sbjct: 633 PEQAERAQSLLQGFIL 648
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAEI------------GFEP-------GQAVVARLLVHSQQIGCLLG 44
SPAQ+A+ +H RI E G E G V RL+V +GCLLG
Sbjct: 125 SPAQEALFLIHDRILENDLQYGVVSSGVGGLEEDEYVGRGGNRVATRLVVSRMHVGCLLG 184
Query: 45 RGGHIVSEMRRATGASIRVFPKDQA-PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P+D PRC S +EIVQV+G+ +V++A+ I+SRLRE+
Sbjct: 185 KGGKIIEQMRMETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVSAVKNAVAIISSRLRES 244
>gi|225455340|ref|XP_002272224.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 661
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 63/314 (20%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI + + + RLLV S +IGC GR + SEMRR TGA+I++
Sbjct: 399 PAQEALLHIQTRIVNLLPDKENVITTRLLVPSSEIGCFEGRDCSL-SEMRRLTGANIQIV 457
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P++Q P S DE+++++G + +DAL +TSRLR ++ + P +
Sbjct: 458 PREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLY----------REFFP--KD 505
Query: 125 MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
MPPP ++PGS +A+ + + P
Sbjct: 506 MPPPSI------SAPGSL----------------------EASSPNNITPA--------- 528
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG--FTPRNRPVESGNH---A 239
R GH T PP+ Q + P +G +N V S +
Sbjct: 529 ------REGH--TASDPPTTNYQNVQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPV 580
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
++T +T+EVVIP+ + + + + L+ I + SGANV + + + AT ++ +SGT +
Sbjct: 581 TLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPE 640
Query: 300 QMRAAQSLIHAFIL 313
Q AQSL+ FIL
Sbjct: 641 QTEKAQSLLQGFIL 654
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAE-------------------IGFEPGQAVVARLLVHSQQIGCLLG 44
SPAQ+A+ +H RI E G V R++V +GCLLG
Sbjct: 132 SPAQEALFMIHDRILESDAGFGNGFGGNGDDDDDFGPRGGGNRVATRMVVSRMHVGCLLG 191
Query: 45 RGGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P+D PRC S +EIVQV+G+ ++V++A+ +I+SRLRE+
Sbjct: 192 KGGKIIEQMRIETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRES 251
>gi|302143921|emb|CBI23026.3| unnamed protein product [Vitis vinifera]
Length = 575
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 63/314 (20%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI + + + RLLV S +IGC GR + SEMRR TGA+I++
Sbjct: 313 PAQEALLHIQTRIVNLLPDKENVITTRLLVPSSEIGCFEGRDCSL-SEMRRLTGANIQIV 371
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P++Q P S DE+++++G + +DAL +TSRLR ++ + P +
Sbjct: 372 PREQLPAFISGTDELLEIVGEIKAARDALVEVTSRLRSYLY----------REFFP--KD 419
Query: 125 MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
MPPP ++PGS +A+ + + P
Sbjct: 420 MPPPSI------SAPGSL----------------------EASSPNNITPA--------- 442
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG--FTPRNRPVESGNH---A 239
R GH T PP+ Q + P +G +N V S +
Sbjct: 443 ------REGH--TASDPPTTNYQNVQAIASVQPSKDSGGTGGETVKQNETVPSVLNRIPV 494
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
++T +T+EVVIP+ + + + + L+ I + SGANV + + + AT ++ +SGT +
Sbjct: 495 TLVTRSTLEVVIPEHAVPKLITRSKNKLAQISEWSGANVTLLEDRLEATGKIIQISGTPE 554
Query: 300 QMRAAQSLIHAFIL 313
Q AQSL+ FIL
Sbjct: 555 QTEKAQSLLQGFIL 568
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%), Gaps = 9/103 (8%)
Query: 4 SPAQDAVMRVHSRIAE--IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPAQ+A+ +H RI E GF G VV+R+ +GCLLG+GG I+ +MR T I
Sbjct: 69 SPAQEALFMIHDRILESDAGFGNGM-VVSRM-----HVGCLLGKGGKIIEQMRIETKTQI 122
Query: 62 RVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
R+ P+D PRC S +EIVQV+G+ ++V++A+ +I+SRLRE+
Sbjct: 123 RILPRDHNLPRCVSMSEEIVQVVGDVNAVKNAIANISSRLRES 165
>gi|168013158|ref|XP_001759268.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689581|gb|EDQ75952.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 136/303 (44%), Gaps = 76/303 (25%)
Query: 4 SPAQDAVMRVHSRI-----------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
+PAQ+A+ +VH+RI ++ EP Q VV RLLV + QIGCLLG+GG I+ +
Sbjct: 73 TPAQEALFKVHARIIADVETSGIDGSDQEEEPSQQVVTRLLVPNNQIGCLLGKGGKIIEQ 132
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP 112
MR+ TGA IRV PKDQ P C P DE+VQV G+ +++ AL I++RL+E P RP
Sbjct: 133 MRQTTGAQIRVLPKDQLPGCALPTDELVQVSGDVSTLKKALLFISARLQEN-PPRDRP-- 189
Query: 113 NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
SY P P F P + + SY S G H G+GP
Sbjct: 190 ---QSY-----AAPAPAFVPVTDYLAKDSYRSK-GTGHVF--GLGPE------------- 225
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
P RSWT + G+ D NR
Sbjct: 226 ----------------------------PLEGRSWT---ISSGNL-SLDRQD-----NRR 248
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
+ G + ++ P + V G+ S + ++R+ +GA + + + PG+ E V+
Sbjct: 249 SKEGRDSG-ENELVFRLLCPSDKIGSVIGKGGSIIHNLRKDTGARIKIANAVPGSDERVI 307
Query: 293 MVS 295
+VS
Sbjct: 308 IVS 310
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 53/103 (51%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
Query: 4 SPAQDAVMRVHSRI-AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
SPA +A+++V SRI AE+G + + RLLV + QIGCLLG+GG I+ +MRRAT A+IR
Sbjct: 320 SPALEAMIQVQSRITAEMGGDKDGIITTRLLVPTNQIGCLLGKGGSIIEDMRRATRANIR 379
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
V PKD PRC DE+VQ++G+ ++ALF + SRLR F
Sbjct: 380 VLPKDTLPRCALDTDELVQIVGDTTVAREALFQVISRLRNNAF 422
>gi|356525090|ref|XP_003531160.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 625
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 55/312 (17%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E V RLLV S+ IGC++G+ G I++E+R+ T A +R
Sbjct: 366 KSMAVEAVLLMQGKIND---EDDTTVSIRLLVPSKVIGCIIGKSGSIINEIRKRTKADVR 422
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
+ D+ P+C +DE+V+V G+ V+DAL I RLR+ + + G N
Sbjct: 423 ISKGDK-PKCADANDELVEVGGSVDCVRDALIQIILRLRDDVLRERDTGHN--------- 472
Query: 123 PEMPPPPFRPRHNPASPG-SYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
P P S G S PS HS+ P +DH+A G+ M+ P+S
Sbjct: 473 ----PSIGAESLYPGSAGLSLPSM---MHSVPPVAAP-MVYDHRAESGAGL-GMLSPSS- 522
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI 241
PYG G+G P G G+ + S + + + +
Sbjct: 523 ----PYG----GYGSL-----------PMG-----DNGYGSMSSYATKL-------YGGL 551
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
+T++++IP + V G+ +N+++IR+ISGA++ ++D K + + ++SGT +Q
Sbjct: 552 PPPSTLDMLIPANAVGKVLGKGGANIANIRKISGASIEISDNKSARGDRIALISGTPEQK 611
Query: 302 RAAQSLIHAFIL 313
RAA++LI AFI+
Sbjct: 612 RAAENLIQAFIM 623
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 80/326 (24%), Positives = 124/326 (38%), Gaps = 79/326 (24%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAVVAR-------LLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA+++VH IA G + R +LV S Q ++G+ G + ++R T
Sbjct: 111 AQDALLKVHVAIANSIAAIGDSEKKRKDRDECQILVPSSQSANIIGKAGATIKKLRSKTR 170
Query: 59 ASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
A+I+V KD A C D V + G +V+ ALF ++S M + GP
Sbjct: 171 ANIKVTAKDAADPTHSCAMEFDNFVVITGESEAVKRALFAVSS-------IMYKFGPRED 223
Query: 116 HSYLPPFPEMPPPPFRPRHNPASP--GSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
S PE PP P P P G YP+ D
Sbjct: 224 ISLDTAVPEAPPSIIIPSDVPVYPPGGLYPAS---------------------------D 256
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGG---DPRGF-DASSGF--T 227
P+V P + PQ +G D +G+ DA + +
Sbjct: 257 PIVTPRA---------------------------VPQIIGATNVPDLQGYADAGNSWPMY 289
Query: 228 PRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
PV SG A+ I ++ P + V G+ S + +RQ SGA++ V+D K
Sbjct: 290 SSALPVVSGVGASRSEELIIRMLCPSDKIGRVIGKGGSTIKSMRQASGAHIEVDDSKANF 349
Query: 288 TEGVVMVSGTSDQMRAAQSLIHAFIL 313
E +++++ T + A +L
Sbjct: 350 DECLIIITTTESPSDLKSMAVEAVLL 375
>gi|224095794|ref|XP_002310483.1| predicted protein [Populus trichocarpa]
gi|222853386|gb|EEE90933.1| predicted protein [Populus trichocarpa]
Length = 747
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/164 (37%), Positives = 92/164 (56%), Gaps = 21/164 (12%)
Query: 156 MGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGG 215
+G S + Q + MD + G + D PSPR W Q + G
Sbjct: 599 VGISHNLNRQTVITQSMDHL-----------------GFSRSLDHSPSPRLWGSQTIPGV 641
Query: 216 DPRGFDASSGFTPRNRP----VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIR 271
+PRG SG P + + SG +A +T+TT+E+VIP+ VYGEN SNL+ +R
Sbjct: 642 NPRGISDLSGGLPSFKAGLDDLVSGGKSAFVTNTTVEIVIPEHTFGSVYGENGSNLARLR 701
Query: 272 QISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315
Q SGA V+V++P+ G ++ ++++SGT D+ +AAQSL+HAFIL G
Sbjct: 702 QFSGAKVIVHEPRLGTSDRIIVISGTPDETQAAQSLLHAFILTG 745
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/129 (41%), Positives = 83/129 (64%), Gaps = 11/129 (8%)
Query: 2 RHSPAQDAVMRVHSRIAE----IGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ V+ V SR+ E G +PG + V RL+V Q+GCLLG+GG I+SEM
Sbjct: 371 RYSAAQKTVVLVFSRVVESVIEKGLDPGSSEGSPVSVRLVVSPNQVGCLLGKGGTIISEM 430
Query: 54 RRATGASIRVFPKDQA-PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRP 110
R+AT SIR+ +DQ P+C +D +V+++G++ +V+D+++HIT RLR+ +F + P
Sbjct: 431 RKATSTSIRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRDNLFSSILGTP 490
Query: 111 GPNNGHSYL 119
G + S L
Sbjct: 491 GARSSSSVL 499
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 5/103 (4%)
Query: 4 SPAQDAVMRVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
S Q+A++RV RI E+ E G V RLL +G ++G+GG V ++R+ G
Sbjct: 128 SKGQEALVRVFERILEVAAESDSVAGGLVSCRLLAEISSVGAVIGKGGKTVEKIRKDCGC 187
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
++V D+ P C S ++E++++ G+ +V+ L ++ RL++
Sbjct: 188 KVKVL-IDKLPACASSNEEMIEIEGDVSAVKKGLVAVSHRLQD 229
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P Q VV R+L ++ ++G ++G+GG+IV+ ++ TGA+I + PK + ++ V
Sbjct: 309 PQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPK-----VAGCDERLITVT 363
Query: 84 GN------YHSVQDALFHITSRLRETIF 105
+ Y + Q + + SR+ E++
Sbjct: 364 ASENPESRYSAAQKTVVLVFSRVVESVI 391
>gi|356519471|ref|XP_003528396.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 591
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 77/112 (68%), Gaps = 8/112 (7%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+SPAQ AV+ V S+ E G E G V A+L+V S Q+GCLLG+GG IVSEM
Sbjct: 329 RYSPAQKAVVLVFSKSVEAGVEKGLDMGSKKESYVTAQLVVPSNQVGCLLGKGGAIVSEM 388
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
R+ATGA+IRV D+ P+C S +D++VQ+ G + +VQ A+++ T RLR+ +F
Sbjct: 389 RKATGANIRVIGNDKVPKCVSDNDQLVQISGEFSNVQAAIYNATGRLRDNLF 440
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 80/122 (65%), Gaps = 3/122 (2%)
Query: 197 TFDRPPSPRSWTPQGVGGGDPRGFD-ASSGFTPRNRPVE--SGNHAAILTSTTIEVVIPQ 253
+ +R P PQ V G + R + S G T + +E SG+ AI+T+TT+++ +P
Sbjct: 468 SLNRHSLPGLQAPQTVAGINSRVTNGVSRGLTSQKGGLELVSGSKTAIVTNTTVQIAVPD 527
Query: 254 LYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
+ VYGEN SNL+ +RQISGA V+V++P+PG ++ +++SGT D+ RAAQSL+ AFIL
Sbjct: 528 DVIGSVYGENGSNLARLRQISGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFIL 587
Query: 314 CG 315
G
Sbjct: 588 AG 589
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 62/105 (59%), Gaps = 7/105 (6%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S AQ A+++V R+ ++ G E G VV+ RLL + Q+G ++G+ G +V ++R T
Sbjct: 86 STAQVALLKVFDRVLDVAAETAGTEVGDRVVSCRLLADTSQVGAVIGKAGKVVEKIRMDT 145
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G IRV + P C +P DEIV+V G SV+ AL ++ L++
Sbjct: 146 GCKIRVL-NEGLPACTAPSDEIVEVEGQLTSVKKALVAVSGCLQD 189
Score = 37.7 bits (86), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RLL H+ ++G ++G+ G ++ ++ ATGA IR+
Sbjct: 25 VTFRLLCHASRVGAIIGKSGVLIKTLQEATGAKIRI 60
>gi|297791069|ref|XP_002863419.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297309254|gb|EFH39678.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 643
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 144/322 (44%), Gaps = 67/322 (20%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E + V +LLV S+ IGC++G+ G I+SE+R+ T A+I
Sbjct: 376 KSMAVEAVLLLQEKIND---EDEEKVKMQLLVPSKVIGCIIGKSGSIISEIRKRTKANIH 432
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
+ + P+C P+DE+V++ G V+DAL I RLR+ + + G N
Sbjct: 433 ISKGNNKPKCADPNDELVEISGEVSDVRDALIQIVLRLRDDVLRDREIGSRN-------- 484
Query: 123 PEMPPPPFRPRHNP-----------ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHG 171
PP R +N A P S+ S V S+D FD +
Sbjct: 485 ----QPPARSENNNFFSSGSSNTGLALPSSFMSSVPQVASVD--------FDRRPETGSS 532
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR 231
M M+P + + YGS P + +S + GG P+
Sbjct: 533 M-SMLPSSGGL--YGYGS-----FPVGNNSYGSKSSYSSNLYGGLPQ------------- 571
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
STT+EV IP + V G NL +IR+ISGA + ++D K +
Sbjct: 572 ------------STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRI 619
Query: 292 VMVSGTSDQMRAAQSLIHAFIL 313
++SGT +Q R A++L AFI+
Sbjct: 620 ALISGTPEQKRTAENLFQAFIM 641
>gi|224135123|ref|XP_002321989.1| predicted protein [Populus trichocarpa]
gi|222868985|gb|EEF06116.1| predicted protein [Populus trichocarpa]
Length = 685
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/323 (28%), Positives = 137/323 (42%), Gaps = 71/323 (21%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI ++ + + RLLV S +IGCL GR G + SEM TGA+I +
Sbjct: 413 PAQEALLHIQTRIVDLVADKDNIITTRLLVPSSEIGCLEGRDGSL-SEMESLTGATIEIL 471
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP----------MKRPGPNN 114
PK+ P S DE+VQ+ G + +DAL +TSRLR ++ + PGP
Sbjct: 472 PKEMLPTYLSGTDELVQIQGEVKAARDALVEVTSRLRSYLYKDVFQKDLPPTVSAPGPAG 531
Query: 115 GHSYLPPFPEMPPPPFRPRHN----PASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSH 170
L P P R H+ PA+ + S P S D G S Q H
Sbjct: 532 TAGGLQAASSNNPTPAREGHSGGDPPATYQNVQSASTPQPSKD-ARGSSAETVKQNESEH 590
Query: 171 GMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
D + PP +RIP +
Sbjct: 591 RED-LPPPTMNRIPVTLVTR---------------------------------------- 609
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
+IL E +P+L ++ + L+ I ++SGANV + + +P TE
Sbjct: 610 ---------SILEVVIPEPAVPKLIT-----KSKNKLAQISELSGANVTLVEDRPDVTEK 655
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
++ +SGT +Q AQSL+ FIL
Sbjct: 656 IIQISGTPEQAERAQSLLQGFIL 678
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 70/120 (58%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAEI------------GFEP-------GQAVVARLLVHSQQIGCLLG 44
SPAQ+A+ +H RI E GFE G V RL+V +GCLLG
Sbjct: 151 SPAQEALFLIHDRILENDLQYGVVSSGAGGFEEDEYVGRGGNRVATRLVVSRMHVGCLLG 210
Query: 45 RGGHIVSEMRRATGASIRVFPKDQA-PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P+D PRC S +EIVQVIG+ ++V++A+ I+SRLRE+
Sbjct: 211 KGGKIIEQMRMETKTQIRILPRDHTLPRCVSVSEEIVQVIGDVNAVKNAVAIISSRLRES 270
>gi|294460460|gb|ADE75808.1| unknown [Picea sitchensis]
Length = 131
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/129 (50%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 191 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DASSGFTPRNRPVESGNHAAILTSTTIEV 249
RPG D+PPSP W QG+G G R D GF P+ + SG+ +A++T+TT+EV
Sbjct: 3 RPGMHHNIDQPPSPGPWAVQGIGAGSARSMTDYGRGF-PQRGSLGSGSQSAVVTNTTVEV 61
Query: 250 VIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
V+P+ + +YGEN +NL+ IRQISGA V+++DP+PGATEG+V++SGT +Q AAQSL+
Sbjct: 62 VVPERVIGSIYGENGNNLTQIRQISGAKVIIHDPRPGATEGLVVISGTPEQTHAAQSLLQ 121
Query: 310 AFILCGVTS 318
AFI+ G +S
Sbjct: 122 AFIMSGQSS 130
>gi|413944062|gb|AFW76711.1| hypothetical protein ZEAMMB73_249479 [Zea mays]
Length = 426
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 137/313 (43%), Gaps = 61/313 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+AV+ + + I ++G + + RLLV + +I C GR G + S+++R T A++++
Sbjct: 162 PAQEAVLHIQTHIVDLGPDMDNIITTRLLVPASEIACFDGREGSL-SDIQRQTSANVQIL 220
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P++ P C DE++Q++G + ++AL +T++LR S+L + E
Sbjct: 221 PREDLPSCALESDELIQIVGEIKAARNALIQVTTKLR---------------SFL--YRE 263
Query: 125 MPPPPFRPR---HNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
MP P H SP + SP GP+ D MG A H D
Sbjct: 264 MPDPIQVGNINLHGAISPVA-GSPRGPYQGNDIPMGAYHQASQLATSWHSKDS------- 315
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA- 240
GG F+ S R + A
Sbjct: 316 -------------------------------GGSASGSFEQGSNINDDIRQSATKRFAVP 344
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+E+VIP +A + S L+ I +ISGA V + + + + VV +SGT +Q
Sbjct: 345 LVTRSTLEIVIPNSAVASLTMRAGSKLAQISEISGAAVTLAEDRSDILQKVVRISGTPEQ 404
Query: 301 MRAAQSLIHAFIL 313
A++L+ FIL
Sbjct: 405 ASKAENLLQGFIL 417
>gi|293332893|ref|NP_001169297.1| uncharacterized protein LOC100383161 [Zea mays]
gi|224028485|gb|ACN33318.1| unknown [Zea mays]
Length = 664
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 137/313 (43%), Gaps = 61/313 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+AV+ + + I ++G + + RLLV + +I C GR G + S+++R T A++++
Sbjct: 400 PAQEAVLHIQTHIVDLGPDMDNIITTRLLVPASEIACFDGREGSL-SDIQRQTSANVQIL 458
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE 124
P++ P C DE++Q++G + ++AL +T++LR S+L + E
Sbjct: 459 PREDLPSCALESDELIQIVGEIKAARNALIQVTTKLR---------------SFL--YRE 501
Query: 125 MPPPPFRPR---HNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
MP P H SP + SP GP+ D MG A H D
Sbjct: 502 MPDPIQVGNINLHGAISPVA-GSPRGPYQGNDIPMGAYHQASQLATSWHSKDS------- 553
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA- 240
GG F+ S R + A
Sbjct: 554 -------------------------------GGSASGSFEQGSNINDDIRQSATKRFAVP 582
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+E+VIP +A + S L+ I +ISGA V + + + + VV +SGT +Q
Sbjct: 583 LVTRSTLEIVIPNSAVASLTMRAGSKLAQISEISGAAVTLAEDRSDILQKVVRISGTPEQ 642
Query: 301 MRAAQSLIHAFIL 313
A++L+ FIL
Sbjct: 643 ASKAENLLQGFIL 655
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 66/118 (55%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E + G RL+V Q +GCLLG+GG
Sbjct: 147 SPAQEALLMVHRRILETDADDGDEDGEYGPRGKDARDRGKTTTRLIVPKQHVGCLLGKGG 206
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ + Q PRC S +E+VQV+G+ + V+ A+ IT RL+E++
Sbjct: 207 KIIEQMRMETKTHIRILSRGQHTPRCVSSSEEVVQVVGDGNCVKKAVAIITDRLKESL 264
>gi|21553916|gb|AAM62999.1| unknown [Arabidopsis thaliana]
Length = 644
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 143/322 (44%), Gaps = 67/322 (20%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E V +LLV S+ IGC++G+ G I+SE+R+ T A I
Sbjct: 377 KSMAVEAVLLLQEKIND---EDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIH 433
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
+ + P+ P+DE+V++ G +V+DAL I RLR+ + + G N
Sbjct: 434 ISKGNNTPKSADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRN-------- 485
Query: 123 PEMPPPPFRPRHNP-----------ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHG 171
PP R +N A P S+ S V S+D FD +
Sbjct: 486 ----QPPARSENNNFFSSSSSNTGLALPQSFMSSVPQVASVD--------FDRRPETGSS 533
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR 231
M + P+S I + YGS P + S + GG P+
Sbjct: 534 MSML--PSSGGI-YGYGS-----FPVGNTSYGSNSSYSSNLYGGLPQ------------- 572
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
STT+EV IP + V G NL +IR+ISGA + ++D K V
Sbjct: 573 ------------STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRV 620
Query: 292 VMVSGTSDQMRAAQSLIHAFIL 313
++SGTS+Q R A++L AFI+
Sbjct: 621 ALISGTSEQKRTAENLFQAFIM 642
>gi|110740181|dbj|BAF01989.1| HEN4 [Arabidopsis thaliana]
Length = 263
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 89/262 (33%), Positives = 133/262 (50%), Gaps = 31/262 (11%)
Query: 81 QVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPPFPEMPPPPFRPRH--NP 136
Q+ G + +V++A+FHITSRLR+++F MK +S + F R NP
Sbjct: 1 QITGEFPNVREAIFHITSRLRDSVFSNSMK-------NSLAKSSSALTTERFYDRQSDNP 53
Query: 137 ASPGSYPS---PVGPFHSMDRGMGPSQPFDHQAAFSH----GMDPMVPPNS---DRI-PF 185
S GS+ S P S+ R S ++ ++ G DP + P DR P
Sbjct: 54 LSIGSHQSVSNPATNSSSLHRRSEDSFLSGSHSSVNYSRSVGTDPYIRPEDPFPDRFNPS 113
Query: 186 PYGSERPGHGPTFDRPPSPRSWT--PQGVGG----GDPRGFDASSGFTPRNRP---VESG 236
S G T D + T P + PRG +SG R + SG
Sbjct: 114 AGYSHNFGRRFTMDHSDNSHHLTEAPSRLWASPPPAAPRGLSDASGGLSSARAGHVLGSG 173
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ +AI+T+TT+E+ +P M+ VYGE NL +RQISGA V++++P G ++ ++++SG
Sbjct: 174 HKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIVISG 233
Query: 297 TSDQMRAAQSLIHAFILCGVTS 318
T DQ +AAQ+L+HAFIL G TS
Sbjct: 234 TPDQTQAAQNLLHAFILTGETS 255
>gi|356528011|ref|XP_003532599.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 433
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 74/111 (66%), Gaps = 8/111 (7%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQA--------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
+SPAQ AV+ V S+ E G E G V ARL+V S Q+GCLLG+GG IVSEMR
Sbjct: 172 YSPAQKAVVLVFSKSVEAGVEKGLELGSKKEPYVTARLVVPSNQVGCLLGKGGAIVSEMR 231
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ATGA+IRV DQ P C S +D++VQ+ G + +VQ A+ + T RLR+ +F
Sbjct: 232 KATGANIRVIGNDQVPMCVSDNDQLVQISGVFSNVQAAIHNATGRLRDHLF 282
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 81/122 (66%), Gaps = 3/122 (2%)
Query: 197 TFDRPPSPRSWTPQGVGGGDPRGFD-ASSGFTPRNRPVE--SGNHAAILTSTTIEVVIPQ 253
+ +R P PQ V G + RG + S G R +E SG+ AI+T+TT+++V+P
Sbjct: 310 SLNRHSLPGLQAPQTVAGINSRGTNGVSRGLISRKGGLELISGSKTAIVTNTTVQIVVPD 369
Query: 254 LYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
+ VYGEN SNL+ +RQISGA V+V++P+PG ++ +++SGT D+ RAAQSL+ AFIL
Sbjct: 370 DVIGSVYGENGSNLARLRQISGAKVIVHEPRPGTSDRTIIISGTPDETRAAQSLLQAFIL 429
Query: 314 CG 315
G
Sbjct: 430 AG 431
>gi|302767378|ref|XP_002967109.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
gi|300165100|gb|EFJ31708.1| hypothetical protein SELMODRAFT_87147 [Selaginella moellendorffii]
Length = 506
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPA +AV+++ SRI++ E A+ R LV S IGCLLG+ G I+++MRR T A+IRV
Sbjct: 339 SPALEAVLQLQSRISDPSAEKDGAMTTRFLVPSANIGCLLGKKGSIIADMRRNTRANIRV 398
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPP 121
K+ P+C DE+VQV+G+ +DA+ I +RLR IF MK N G
Sbjct: 399 LSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLRANIFSEHMKNVSSNPGLGVQGS 458
Query: 122 FPEMPPPPFRPRHNPASPGSYPSP 145
P + PRH P SPG + P
Sbjct: 459 VP--VSSTYEPRHEP-SPGMFSLP 479
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/143 (39%), Positives = 79/143 (55%), Gaps = 17/143 (11%)
Query: 6 AQDAVMRVHSRIAEIGFE-----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+Q+A+ +V +RI E + V ARLLV S QIGCLLG+ G I+ +MR +GA
Sbjct: 131 SQEALFKVFARIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQ 190
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IRV P++Q P+C DE+VQ+ G V+ AL I++RL + P + P GH L
Sbjct: 191 IRVLPREQLPKCAYHTDELVQLTGELALVKKALTTISTRLYDN--PPRDKPPQAGH--LG 246
Query: 121 PFPE--------MPPPPFRPRHN 135
PF E +PP F P+ N
Sbjct: 247 PFQESTILPGTLLPPGAFFPQGN 269
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
P VV R+L +IG ++G+GG I+ +R TGA I+V
Sbjct: 42 PVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKV 81
>gi|302754958|ref|XP_002960903.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
gi|300171842|gb|EFJ38442.1| hypothetical protein SELMODRAFT_73985 [Selaginella moellendorffii]
Length = 502
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/144 (41%), Positives = 82/144 (56%), Gaps = 5/144 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPA +AV+++ SRI++ E A+ R LV S IGCLLG+ G I+++MRR T A+IRV
Sbjct: 335 SPALEAVLQLQSRISDPSAEKDGAMTTRFLVPSANIGCLLGKKGSIIADMRRNTRANIRV 394
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP--MKRPGPNNGHSYLPP 121
K+ P+C DE+VQV+G+ +DA+ I +RLR IF MK N G
Sbjct: 395 LSKEALPKCAHEDDELVQVVGDITVARDAVIEIITRLRANIFSEHMKNVSSNPGLGVQGS 454
Query: 122 FPEMPPPPFRPRHNPASPGSYPSP 145
P + PRH P SPG + P
Sbjct: 455 VP--VSSTYEPRHEP-SPGMFSLP 475
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 77/143 (53%), Gaps = 19/143 (13%)
Query: 6 AQDAVMRVHSRIAEIGFE-----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+Q+A+ +V +RI E + V ARLLV S QIGCLLG+ G I+ +MR +GA
Sbjct: 129 SQEALFKVFARIVEGEEFDEDEDSSRNVTARLLVPSNQIGCLLGKAGKIIEQMRVESGAQ 188
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IRV P++Q P+C DE+ + G V+ AL I++RL + P + P GH L
Sbjct: 189 IRVLPREQLPKCAYHTDEL--LTGELALVKKALTTISTRLYDN--PPRDKPPQAGH--LG 242
Query: 121 PFPE--------MPPPPFRPRHN 135
PF E +PP F P+ N
Sbjct: 243 PFQESTILPGTLLPPGAFFPQGN 265
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
P VV R+L +IG ++G+GG I+ +R TGA I+V
Sbjct: 42 PVDDVVYRILCPGAKIGSVIGKGGSIIKSLRNETGAKIKV 81
>gi|148905782|gb|ABR16055.1| unknown [Picea sitchensis]
Length = 650
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
R SP +AV+ + + + + G A+ R LV S+ IGCLLG+GG+I+SEMR+ T A+I
Sbjct: 374 RVSPTIEAVLLLQGKTSGTTDKDG-AISTRFLVPSKHIGCLLGKGGNIISEMRKQTRANI 432
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
R+F KD+ P C S ++E+VQV G +DAL I RLRE IF K G +N S LP
Sbjct: 433 RIFRKDERPICVSENEELVQVTGEPGVAKDALIQILKRLRENIFKDK-DGASNTDSVLP 490
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 21/155 (13%)
Query: 5 PAQDAVMRVHSRIAEIG------FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
PAQD ++RVHS I + + + ARLLV + QIG L+G+GG+ + ++R +G
Sbjct: 116 PAQDGLLRVHSVIVQESSGKDNDADKKRPQDARLLVANSQIGSLIGKGGNNIQKLRSESG 175
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKRPGPN 113
A I++ KD+ P C DE+V + G+ +V+ AL+ +++ L +E I P P
Sbjct: 176 AQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLFKHPPKEQI-PWSVILPE 234
Query: 114 NGHSYLPP--FPEMPPPPFRPR-------HNPASP 139
S LPP P PP + P+ HN ++P
Sbjct: 235 TNQSSLPPSGVPTFPPANYLPQGDSLFGHHNLSAP 269
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/68 (52%), Positives = 46/68 (67%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E IP ++ V G SN+SHIR+ISGA V + DP GA++ VV +SGT +Q AAQSL
Sbjct: 571 EFAIPNSAVSSVLGRGGSNISHIREISGATVKLRDPITGASDRVVEISGTPEQSHAAQSL 630
Query: 308 IHAFILCG 315
I AF+L G
Sbjct: 631 IQAFMLTG 638
>gi|224127654|ref|XP_002329331.1| predicted protein [Populus trichocarpa]
gi|222870785|gb|EEF07916.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 79/140 (56%), Gaps = 11/140 (7%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
DA++++ + ++ F ++ RLLV S ++GC+LG+GG +++EMRR A IRV+PK+
Sbjct: 375 DAILQLQDKTSD--FSEKGMIITRLLVPSSKVGCILGQGGQVINEMRRRLQADIRVYPKN 432
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPP 127
P+C S +E+VQ+ GNY +DAL I SRLR + ++ P P P
Sbjct: 433 DKPKCASDDEELVQISGNYGVAKDALAEIASRLRARTL-------RDANAGTEPGPAGPV 485
Query: 128 PPFRPRHNPASPGSYPSPVG 147
P F P N PG P P G
Sbjct: 486 PGFGPARN--LPGRGPQPSG 503
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/171 (35%), Positives = 81/171 (47%), Gaps = 25/171 (14%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQA---------VVARLLVHSQQIGCLLGRGGHIVSEM 53
H AQDA+++VH RI E G A V ARLLV + +GC+LG+ G ++ +
Sbjct: 123 HCAAQDALLKVHDRIVEEDLFGGMASDDDNDNNVVTARLLVPNNMVGCVLGKRGDVIQRL 182
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG-- 111
R TGA+IRV P D P C DE+VQ+ G + AL+ I+ L + K P
Sbjct: 183 RSETGANIRVLPADHLPSCAMDTDELVQISGKPAVAKRALYEISILLHQNPRKDKLPSVP 242
Query: 112 -PNNGHSYLPP---FPEMPPP--PFRPRHNPA--------SPGSYPSPVGP 148
P G ++ PP M PP P P N G++PS GP
Sbjct: 243 MPYGGRTFHPPSDSMANMLPPGNPMWPHRNSTPHSMPWMGEYGNHPSEFGP 293
>gi|115475229|ref|NP_001061211.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|38636959|dbj|BAD03220.1| putative KH domain protein [Oryza sativa Japonica Group]
gi|113623180|dbj|BAF23125.1| Os08g0200400 [Oryza sativa Japonica Group]
gi|215695475|dbj|BAG90642.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 441
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 88/312 (28%), Positives = 147/312 (47%), Gaps = 54/312 (17%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + S+I + + + RLLV + IGCL+G+GG IV++MR T A+I
Sbjct: 181 KSAAVEAVLLLQSKIND---DNEGKMNLRLLVPGKVIGCLIGKGGSIVNDMRSKTKAAIY 237
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
+ K + PR S DE+V+V G +++DAL I RLR+ + R + +S
Sbjct: 238 I-SKGEKPRKASSSDELVEVFGEVENLRDALVQIVLRLRDDVL---RDSVDRQNS----- 288
Query: 123 PEMPPPPFRPRHNPASPGSYPSP-VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
E +P SYP P + P+ +G +DH+ G++ V P+S
Sbjct: 289 -EKDGKLTVATTDPLYASSYPLPALLPYRQQITPLG----YDHRGDIERGLE--VYPHSS 341
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI 241
+ Y S + D + S+ +G GG P
Sbjct: 342 L--YGYSSLQ----AIDDGYSAVSSYASKGYGGRPPH----------------------- 372
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
+E+ IP ++ V G++ +NL +I +ISGA++ + + K V +SGT++Q
Sbjct: 373 -----MEMTIPASGLSKVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARISGTTEQK 427
Query: 302 RAAQSLIHAFIL 313
++A++LI AFI+
Sbjct: 428 QSAENLIKAFIM 439
>gi|293331673|ref|NP_001170496.1| uncharacterized protein LOC100384498 [Zea mays]
gi|238005660|gb|ACR33865.1| unknown [Zea mays]
Length = 239
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 127/292 (43%), Gaps = 65/292 (22%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLV ++ IGCL+GRGG IV++MR+ T A+I + D+ PR S DE+V+V G ++
Sbjct: 4 RLLVPNKVIGCLIGRGGSIVNDMRKKTKANILISKGDK-PRRASSSDELVEVSGEADKLR 62
Query: 91 DALFHITSRLRETIFPMKRPGPN---NGHSYLPPF-----PEMPPPPFRPRHNPASPGSY 142
DAL I RLRE + N +G + +P P P + +P Y
Sbjct: 63 DALVQIILRLREAVLKESVESQNSDRDGQLTVAASDSLYGSSLPLPALLPHNQQIAPLGY 122
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
DR P + + + P S YG
Sbjct: 123 ----------DRRGEPERALE-----------VFPRTS-----SYGY------------- 143
Query: 203 SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGE 262
S T G GG A PR +E+ +P ++ V G+
Sbjct: 144 SSMQVTDDGYGGLPSYASKAYEEHVPR-----------------LEMTVPASGISKVMGK 186
Query: 263 NNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
+ +NL +IR+ISGA++ + +PK E + +SGTS+Q +A++LI AFI+
Sbjct: 187 HGTNLDNIRKISGAHIEIIEPKSSRHEHIAYISGTSEQRHSAENLIKAFIMS 238
>gi|357145086|ref|XP_003573519.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 632
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 87/313 (27%), Positives = 141/313 (45%), Gaps = 58/313 (18%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + ++I + G E + RLLV IGCL+G+GG IV++MR + A I +
Sbjct: 373 SAAVEAVLLLQAKIND-GIEDRMHI--RLLVPGNVIGCLIGKGGSIVNDMRNKSKAIIHI 429
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP---MKRPGPNNGHSYLP 120
K PR S DE+V+V G ++DAL I RLRE + ++ +G +
Sbjct: 430 -SKGSKPRRASSSDELVEVFGEVDKLRDALVQIVLRLREDVLKDSVERQNSDKDGKRTIA 488
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
M F + P PS R + P +D + G+D + P +S
Sbjct: 489 ITEPMYSSNF------SMPALLPST--------RQVSP-LSYDQRGEVERGLD-VYPRSS 532
Query: 181 DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA 240
+ G+G + S+T + GG P
Sbjct: 533 SYRYSSLQAVDDGYG-------AHSSYTSKSYGGRRP----------------------- 562
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
IE++IP ++ V G+ +NL +IR+ISGA++ + + K + V +SGT +Q
Sbjct: 563 -----DIEMIIPASGLSKVIGKRGTNLDNIRKISGADIEIIESKSSRHDHVAHISGTPEQ 617
Query: 301 MRAAQSLIHAFIL 313
++A++LI AFI+
Sbjct: 618 RQSAENLIRAFIM 630
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 78/324 (24%), Positives = 130/324 (40%), Gaps = 72/324 (22%)
Query: 6 AQDAVMRVHSRIAE---IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
AQ+A+++VH I E I + A +LV + Q ++G+ G ++ +R + +SI+
Sbjct: 116 AQNALLKVHDAIVEALAINSDSDDEE-ANILVPASQAASVIGKSGSVIKRLRSISKSSIK 174
Query: 63 VFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRET----IFPMKRPGPNNG 115
V PKD + C D VQ+ G+ +V+ ALF +++ + ++ I P++
Sbjct: 175 VRPKDPSEVTHSCAMSFDNFVQITGDARAVKKALFAVSAIIYKSPSKEIIPLE------- 227
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM 175
E+PP P P P S F+S+ G PS H P+
Sbjct: 228 ----TSVQELPPSIIIPSELPVYPASN------FYSLSDGAMPS---------GHPSLPI 268
Query: 176 V--PPNSDRIP-FPYGSERPGHGPTFDR--PPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
+ P + RIP F ++ G P + P P TP+G G
Sbjct: 269 LGAPHHVSRIPEFTVPADAHGRLPIYQSMVPAIPTYSTPKGSG----------------- 311
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
+ VV P + V G+ + IR+ SGAN+ V+D K E
Sbjct: 312 -------------DLLLRVVCPGDKIGLVIGKGGMTIKSIRKESGANIDVDDAKNDREES 358
Query: 291 VVMVSGTSDQMRAAQSLIHAFILC 314
++ V+ T + + A +L
Sbjct: 359 IITVTSTEATDDVKSAAVEAVLLL 382
>gi|357117002|ref|XP_003560265.1| PREDICTED: uncharacterized protein LOC100827626 [Brachypodium
distachyon]
Length = 656
Score = 97.4 bits (241), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 146/323 (45%), Gaps = 23/323 (7%)
Query: 2 RHSPAQDAVMRVHSRIAEI--GFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
+HS Q A++ + R+ E+ G+ AR+LV Q L+G GG I+ EM ++TG
Sbjct: 338 KHSKVQSAILCIFDRMEEVERNLMFGKPECSARVLVPKSQFSSLVGLGGAIIKEMVKSTG 397
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSY 118
A I + + P C S + ++Q+ GN +V+DALF ++ +LR F K ++G++
Sbjct: 398 ARIEILDEMDVPACASNCERVLQITGNLVNVRDALFVVSEKLRNHAFSSKCTKHDDGNAT 457
Query: 119 LPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQ-AAFSHGMDPMVP 177
E N +S +Y + P + + + ++ +AF G
Sbjct: 458 ASDIIESTAS---MTVNISSTDNYSTDNFPRTDHEPSVIQMESLENSFSAFHLG-----S 509
Query: 178 PNSDRIPFPYGSERPGHGPTFD---RPPSPRSWTPQGV----GGGDPRGFDASSGFT-PR 229
P S + +E G + +PP+ GV G D R ++ G T P
Sbjct: 510 PGSLELESLANAEDTGIINLKNEGQKPPNRSCAVITGVQKPADGDDDRISKSNHGITSPD 569
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
+ ++T T E+ +Y + +NL+ +RQI+GA++ V DP P ++
Sbjct: 570 ENQLMRVMKDPVVTRMTYEIAACGGIFCLLYRDKGNNLAQLRQITGADISVYDPPPETSD 629
Query: 290 GVVMVSGTSDQMRAAQSLIHAFI 312
+++SGT DQ AQ + A I
Sbjct: 630 CSIVISGTPDQ---AQLALAALI 649
>gi|53749469|gb|AAU90323.1| KH domain containing protein [Solanum demissum]
Length = 533
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP DA MR+ R +E E G A++ RLLV S ++GCL+G+GG I++EMR +T AS
Sbjct: 330 QSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIINEMRNSTRAS 389
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKR--PGPNNGHSY 118
IRV K+ P+ S DE+VQ+ G+ + +AL + RLR F M+ P + G SY
Sbjct: 390 IRVLSKENLPKVASEDDEMVQITGDANVATNALLQVLMRLRANTFEMEGSFPAFSPGLSY 449
Query: 119 LPPFPEMP 126
+P MP
Sbjct: 450 VPMSASMP 457
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH R+ + E Q + R+LV S QIGC++G+GG ++ +R T
Sbjct: 110 SPAQDALFRVHDRVLAEDLRMDEDLEDHQQITVRMLVPSDQIGCVIGKGGQVIQNLRSET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IRV + P C DE++Q+ G V+ AL+ + +RL
Sbjct: 170 GAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARL 212
>gi|113205451|gb|AAW28569.2| KH domain containing protein, putative [Solanum demissum]
Length = 600
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/128 (42%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP DA MR+ R +E E G A++ RLLV S ++GCL+G+GG I++EMR +T AS
Sbjct: 330 QSPTIDATMRLQPRSSEKTEKESGDAILTTRLLVPSSRVGCLIGKGGSIINEMRNSTRAS 389
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKR--PGPNNGHSY 118
IRV K+ P+ S DE+VQ+ G+ + +AL + RLR F M+ P + G SY
Sbjct: 390 IRVLSKENLPKVASEDDEMVQITGDANVAANALLQVLMRLRANTFEMEGSFPAFSPGLSY 449
Query: 119 LPPFPEMP 126
+P MP
Sbjct: 450 VPMSASMP 457
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 61/105 (58%), Gaps = 6/105 (5%)
Query: 4 SPAQDAVMRVHSRIA------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH R+ + E Q + R+LV S QIGC++G+GG ++ +R T
Sbjct: 110 SPAQDALFRVHDRVLAEDLRMDEDLEDHQQITVRMLVPSDQIGCVIGKGGQVIQNLRSET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IRV + P C DE++Q+ G V+ AL+ + +RL +
Sbjct: 170 GAQIRVLSSEHLPPCALNSDELLQITGEGAVVKKALYQVAARLHD 214
>gi|388511497|gb|AFK43810.1| unknown [Lotus japonicus]
Length = 279
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%), Gaps = 8/126 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R ++ E +V+ RLLV S +IGCL+G+GG I++EMRR T A+
Sbjct: 74 SPTIEAAVRLQPRCSD-KVERDSGIVSFTTRLLVPSSRIGCLIGKGGTIITEMRRLTKAN 132
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ PK+ P+ S DE+VQ+ G+ +DAL + +RL+ +F +R P +LP
Sbjct: 133 IRILPKEDLPKIASEDDEMVQISGDLDVAKDALVQVLTRLKANLFDKERAVPG----FLP 188
Query: 121 PFPEMP 126
P +P
Sbjct: 189 VMPYLP 194
>gi|359488265|ref|XP_003633728.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
gi|296087281|emb|CBI33655.3| unnamed protein product [Vitis vinifera]
Length = 676
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+A++++ ++ +E + G + RLLV S ++GC+LG+GGH+++EMRR T A IRV+ K+
Sbjct: 378 EAILQLQNKTSEYSDKGG--MTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKE 435
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
P+C S +E+VQ+ GN+ +DAL I SRLR
Sbjct: 436 DKPKCASDDEELVQISGNFGVAKDALAEIASRLR 469
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 3 HSPAQDAVMRVHSRIAE------IGFE---PGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
H PAQDA+M+VH RI E FE V ARLLV + +GCLLG+ G ++ +
Sbjct: 123 HCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRGDVIQRL 182
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL----RETIFPMKR 109
R TGA+IRV P + P C DE+VQ+ G + AL+ +++ L R+ P
Sbjct: 183 RSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKDKPPSSF 242
Query: 110 PGPNNGHSYLPP---FPEMPPP--PFRPRHNPASPGSYPSP 145
P G + PP MPPP P N S G P P
Sbjct: 243 PMSFGGQGFHPPGASMGNMPPPGNPMWSNRNSNSQGVPPMP 283
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 220 FDASSG----FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
F+ S G + P++ PV ++++E IP ++ V G N++++ +++G
Sbjct: 516 FELSKGGGLEYEPQSYPVPPAATGYHNVNSSMESKIPNNSVSSVIGMGGGNVANMSEMAG 575
Query: 276 ANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
A V + DP+ G +E VV + G+S+ + AAQS++ AF+
Sbjct: 576 ARVKLQDPQSGGSECVVEIRGSSEHLTAAQSILQAFM 612
>gi|297807547|ref|XP_002871657.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297317494|gb|EFH47916.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 544
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 53/130 (40%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +AVMR+ + +E E +V+ RLLV S +IGC+LG+GG I++EMRR T A
Sbjct: 339 YSPTIEAVMRLQPKCSE-KVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKA 397
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ K+ P+ S DE+VQ+ G ++AL ITSRLR +F R G + + +
Sbjct: 398 NIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF--DREGAVS--ALM 453
Query: 120 PPFPEMPPPP 129
P P +P P
Sbjct: 454 PVLPYVPVAP 463
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ R+H R+ +E E Q V A+LLV S QIGC+LGRGG IV +R T
Sbjct: 111 SPAQDALFRIHDRVVADDAQSEDSSEGEQQVTAKLLVPSDQIGCILGRGGQIVQNIRSET 170
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
GA IR+ P C DE++Q+ G V+ AL I SRL E
Sbjct: 171 GAQIRIIKDRNMPLCALNSDELIQISGEVLIVKKALHQIASRLHEN 216
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-------SPHDEIV 80
V R L ++IG ++GRGG IV ++R T + IR+ + P C SP DE
Sbjct: 44 TVFRYLCPVKKIGSVIGRGGEIVKQLRMDTRSKIRI--GEAIPGCDERVITIYSPSDE-T 100
Query: 81 QVIGNYHSV----QDALFHITSRL 100
G+ V QDALF I R+
Sbjct: 101 NAFGDGEKVLSPAQDALFRIHDRV 124
>gi|147790774|emb|CAN72739.1| hypothetical protein VITISV_027256 [Vitis vinifera]
Length = 668
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+A++++ ++ +E + G + RLLV S ++GC+LG+GGH+++EMRR T A IRV+ K+
Sbjct: 406 EAILQLQNKTSEYSDKGG--MTTRLLVPSSKVGCILGQGGHVINEMRRRTQADIRVYSKE 463
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
P+C S +E+VQ+ GN+ +DAL I SRLR
Sbjct: 464 DKPKCASDDEELVQISGNFGVAKDALAEIASRLR 497
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 79/161 (49%), Gaps = 18/161 (11%)
Query: 3 HSPAQDAVMRVHSRIAE------IGFE---PGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
H PAQDA+M+VH RI E FE V ARLLV + +GCLLG+ G ++ +
Sbjct: 151 HCPAQDALMKVHERIIEEDLFGGTEFEDDNENTVVTARLLVPNNMVGCLLGKRGDVIQRL 210
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL----RETIFPMKR 109
R TGA+IRV P + P C DE+VQ+ G + AL+ +++ L R+ P
Sbjct: 211 RSETGANIRVLPAEHLPTCAMSSDELVQISGKPAVAKKALYEVSTLLHQNPRKDKPPSSF 270
Query: 110 PGPNNGHSYLPP---FPEMPPP--PFRPRHNPASPGSYPSP 145
P G + PP MPPP P N S G P P
Sbjct: 271 PMSFGGQGFHPPGASMGNMPPPGNPMWSNRNSNSQGVPPMP 311
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 56/97 (57%), Gaps = 4/97 (4%)
Query: 220 FDASSG----FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
F+ S G + P++ PV ++++E IP ++ V G N++++ +++G
Sbjct: 544 FELSKGGGLEYEPQSYPVPPAATGYHNVNSSMESKIPNNSVSSVIGMGGGNVANMSEMAG 603
Query: 276 ANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
A V + DP+ G +E VV + G+S+ + AAQS++ AF+
Sbjct: 604 ARVKLQDPQSGGSECVVEIRGSSEHLTAAQSILQAFM 640
>gi|255584811|ref|XP_002533123.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223527086|gb|EEF29268.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 405
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 78/127 (61%), Gaps = 6/127 (4%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
++SP +A +R+ R +E I + G + RLLV + +IGCLLG+GG I++EMR+ T A
Sbjct: 213 QYSPTIEAAIRLQPRCSEKIARDSGLISFTTRLLVPTSRIGCLLGKGGVIINEMRKVTKA 272
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ KD P+ S DE+VQ+ G+ +DAL H++ RLR F R G + ++L
Sbjct: 273 NIRILGKDNLPKVASEDDEMVQISGDLDVAKDALTHVSRRLRANAF--DREGAVS--TFL 328
Query: 120 PPFPEMP 126
P P +P
Sbjct: 329 PVLPYLP 335
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
E G V ARL+V S QIGC++G+GG IV +R TGA IR+ + P C DE+VQ+
Sbjct: 8 EGGHQVTARLIVPSDQIGCIIGKGGQIVQNIRSETGAQIRILKDEHLPPCALSTDELVQI 67
Query: 83 IGNYHSVQDALFHITSRLRE 102
G V+ AL+ I +RL E
Sbjct: 68 SGEVAVVKKALYQIATRLHE 87
>gi|255551350|ref|XP_002516721.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223544094|gb|EEF45619.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 537
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/94 (42%), Positives = 64/94 (68%), Gaps = 2/94 (2%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
DA++++ ++ ++ F + RLLV S ++GC+LG+GG +++EMRR T A IRV+ KD
Sbjct: 377 DAILQLQNKTSD--FSEKGTITTRLLVPSSKVGCILGQGGQVINEMRRRTQADIRVYSKD 434
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ P+C S +E+VQ+ G + +DAL I SRLR
Sbjct: 435 EKPKCASEDEELVQISGKFGVAKDALAEIASRLR 468
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 86/174 (49%), Gaps = 19/174 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQA---------VVARLLVHSQQIGCLLGRGGHIVSEM 53
+ AQDA+++VH RI E G V ARLLV + +GCLLG+ G ++ +
Sbjct: 123 YCAAQDALLKVHDRIVEEDLFGGMTSDDDNENGFVTARLLVPNNMVGCLLGKRGDVIQRL 182
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET---IFPMKRP 110
R TGA+IRV P D P C DE+VQ+ + AL+ +++ L + P P
Sbjct: 183 RSETGANIRVLPADHLPTCAMSTDELVQISAKPDVAKKALYEVSTLLHQNPRKDKPPSVP 242
Query: 111 GPNNGHSYLP---PFPEMPP--PPFRPRHNPASPGSYPSPV-GPFHSMDRGMGP 158
P +G S+ P P +PP P P HN +S P P+ G + S G GP
Sbjct: 243 MPYSGQSFHPPGGPMKNLPPLGSPMWPHHN-SSHSIPPMPIMGRYGSQSSGFGP 295
>gi|195658007|gb|ACG48471.1| hypothetical protein [Zea mays]
Length = 157
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/157 (38%), Positives = 85/157 (54%), Gaps = 8/157 (5%)
Query: 163 DHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQG--VGGGDPRGF 220
DH+ H M+ M +DR+P+ YG E+ G P ++P SPR+ P+ PR
Sbjct: 3 DHRPPPVHSMEYM---GADRMPYLYGVEQGGPRPFLEQP-SPRTCPPEAPRTNSEVPRNM 58
Query: 221 -DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVV 279
DA R PV N A T TT EV+IP Y+ V G N S + I ++SGA++
Sbjct: 59 SDAVPATDFRKGPVAIENQVATPTGTT-EVIIPCNYIGFVCGNNGSEIEEIEKMSGASIT 117
Query: 280 VNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 316
V+DPK G V++ G ++ + AQSLIHAFI CG+
Sbjct: 118 VHDPKAGDANSKVVICGDPEETKKAQSLIHAFIFCGL 154
>gi|413955310|gb|AFW87959.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 528
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 5 PAQDAVMRVHSRIA-------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH R+A E E V RLLV S QIGC+LG+GGHI+ +R T
Sbjct: 106 PAQDALFRVHERLATDESFGNEDSEEISPQVTVRLLVPSDQIGCILGKGGHIIQGIRSET 165
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IRV KD P C DE++Q+ G+ V+ AL ++SRL
Sbjct: 166 GAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVSSRL 208
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFE--PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E Q+ RLLV + +IGCL+G+GG I++E+RR + A+I
Sbjct: 339 SPTIDAAVRLQLRCSEKSDSELAEQSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANI 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K+ P+ + +E+VQ+ G + AL I +RL+ F +R G L
Sbjct: 399 RILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRLKANFF--EREGS------LSA 450
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
FP + P ++P G S + + R P + + +AF D M+P SD
Sbjct: 451 FPSVIP------YHPLPAGVSVSDEPKY--LSRDTKPVGHYLYSSAF-RTSDDMIP--SD 499
Query: 182 RIPFPYGSERPGHG 195
GS+ PG G
Sbjct: 500 SYASYGGSQAPGGG 513
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 22 FEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
+ PG V R L S++IG ++GRGG I ++R T A IR+ + P C + ++
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRI--GESVPGC---EERVI 85
Query: 81 QVIGNYHSV-------------QDALFHITSRL 100
+ + QDALF + RL
Sbjct: 86 TIFSSSRRTNTIDDAEDKVCPAQDALFRVHERL 118
>gi|326517934|dbj|BAK07219.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 632
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 134/311 (43%), Gaps = 53/311 (17%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + ++I + E + RLLV IGCL+G+GG I+++MR + A I +
Sbjct: 372 SAAVEAVLLLQAKIND---ETEDRMHLRLLVPGNVIGCLIGKGGSIINDMRNKSKAIIHI 428
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
K PR S DE+V+V G ++DAL I RLRE + N+G
Sbjct: 429 -SKGTKPRKASSSDELVEVFGEVDKLRDALVQIVLRLREDVLKDSVGRQNSGKDGKLTVA 487
Query: 124 EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA-FSHGMDPMVPPNSDR 182
P S S+P P P+ Q H V S+
Sbjct: 488 TT---------EPVSSSSFPMP------------ALLPYSQQITPLRHDQRGEVERGSN- 525
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAIL 242
FP S G+ SPR G G +S P R V
Sbjct: 526 -VFPRSSLYHGY--------SPREAVDDGF------GVRSSYTSKPYGRRVPD------- 563
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+E+ IP ++ V G++ +NL +IR+ISGA++ + + K + V + GT +Q +
Sbjct: 564 ----MEMFIPSSGLSKVMGKHGTNLDNIRKISGADIEILESKSSRHDHVAHIFGTPEQWQ 619
Query: 303 AAQSLIHAFIL 313
+A++LI AFI+
Sbjct: 620 SAENLIKAFIM 630
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/313 (23%), Positives = 116/313 (37%), Gaps = 52/313 (16%)
Query: 6 AQDAVMRVHSRI--AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
AQ+A+++VH I A + A +LV + Q ++G+ G ++ ++R + + I+V
Sbjct: 115 AQNALLKVHDAIVGALAVTDDSDDKEANILVPASQAASVIGKSGSVIKKLRSVSKSFIKV 174
Query: 64 FPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
PKD + C D VQ+ G+ +V+ ALF +++ + + P K P
Sbjct: 175 KPKDPSDVTHSCAMSFDNFVQITGDARAVKKALFAVSTIMYKC--PSKENIP-----LET 227
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNS 180
E+PP P P P S V D +P
Sbjct: 228 SIDELPPTIILPSELPVYPASSLYSVS-------------------------DASMPSGH 262
Query: 181 DRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA 240
+ + R H P F P GG P N P SG
Sbjct: 263 PSLSILGATSRGSHVPDF--------TVPIDTHGGLPIYQSMVPAVPTYNTPKCSGE--- 311
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ VV P + V G+ + +IR+ SGA V V+D K E ++ VS T
Sbjct: 312 ----LLLRVVCPGDKIGLVIGKAGMTIKNIRKESGARVDVDDAKNDKEESIITVSSTEAT 367
Query: 301 MRAAQSLIHAFIL 313
+ + A +L
Sbjct: 368 DDVKSAAVEAVLL 380
>gi|413955311|gb|AFW87960.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
gi|413955312|gb|AFW87961.1| hypothetical protein ZEAMMB73_110576 [Zea mays]
Length = 543
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 5 PAQDAVMRVHSRIA-------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH R+A E E V RLLV S QIGC+LG+GGHI+ +R T
Sbjct: 106 PAQDALFRVHERLATDESFGNEDSEEISPQVTVRLLVPSDQIGCILGKGGHIIQGIRSET 165
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IRV KD P C DE++Q+ G+ V+ AL ++SRL
Sbjct: 166 GAQIRVLSKDHIPACAISGDELLQISGDMVVVKKALCQVSSRL 208
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 95/194 (48%), Gaps = 21/194 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFE--PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E Q+ RLLV + +IGCL+G+GG I++E+RR + A+I
Sbjct: 339 SPTIDAAVRLQLRCSEKSDSELAEQSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANI 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K+ P+ + +E+VQ+ G + AL I +RL+ F +R G L
Sbjct: 399 RILSKENVPKVAAEDEEMVQISGGLDVARHALVQIATRLKANFF--EREGS------LSA 450
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
FP + P ++P G S + + R P + + +AF D M+P SD
Sbjct: 451 FPSVIP------YHPLPAGVSVSDEPKY--LSRDTKPVGHYLYSSAF-RTSDDMIP--SD 499
Query: 182 RIPFPYGSERPGHG 195
GS+ PG G
Sbjct: 500 SYASYGGSQAPGGG 513
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 19/93 (20%)
Query: 22 FEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
+ PG V R L S++IG ++GRGG I ++R T A IR+ + P C + ++
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRI--GESVPGC---EERVI 85
Query: 81 QVIGNYHSV-------------QDALFHITSRL 100
+ + QDALF + RL
Sbjct: 86 TIFSSSRRTNTIDDAEDKVCPAQDALFRVHERL 118
>gi|356509231|ref|XP_003523354.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 644
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA---------------VVARLLVHSQQIGCLLGRGGH 48
SPAQ+A++ +H RI E G A + RL+V +GCLLG+GG
Sbjct: 126 SPAQEALLLIHERILESDAAFGVAEEDEEYGGRGGGRDRIATRLVVSRMHVGCLLGKGGK 185
Query: 49 IVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107
I+ +MR T IR+ P+D PRC S +EIVQV+GN ++V++AL I+SRLRE+
Sbjct: 186 IIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGNVNAVKNALVIISSRLRES--QH 243
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA 167
+ +G + P P + P + GS S V RG + ++ +
Sbjct: 244 RDRSHFHGRVHSPERFFSPDDDYVPH---VTSGSRRSSVDGASFGSRGSNTNSRNNNHPS 300
Query: 168 FSHGMDPMVPPNSDRIPFPYGSE 190
++ M+P P D YG E
Sbjct: 301 LNYAMEPGAAPVVDDAQGFYGEE 323
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 67/101 (66%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ V +RI ++ + + RL+V S +I CL G+ + SE+RR TGA+I++
Sbjct: 385 PAQEALLHVQTRIVDLVLDKDNTITTRLVVPSSEIECLDGKDVSL-SEIRRLTGANIQIL 443
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
P+D+ P C + DE+VQ++G + +DA+ +TSRLR ++
Sbjct: 444 PRDELPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLY 484
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 49/73 (67%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+EVV+P+ + + ++ S L+ I ++SGANV + + +P T+ ++ +SGT +Q
Sbjct: 565 LVTRSTLEVVLPEYAVPKLVAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 624
Query: 301 MRAAQSLIHAFIL 313
AQSL+ FIL
Sbjct: 625 AERAQSLLQGFIL 637
>gi|218200638|gb|EEC83065.1| hypothetical protein OsI_28176 [Oryza sativa Indica Group]
gi|222640076|gb|EEE68208.1| hypothetical protein OsJ_26373 [Oryza sativa Japonica Group]
Length = 431
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 59/296 (19%)
Query: 27 AVVARLLVHSQ--------QIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
AV A LL+ S+ IGCL+G+GG IV++MR T A+I + K + PR S DE
Sbjct: 184 AVEAVLLLQSKINDDNEGKVIGCLIGKGGSIVNDMRSKTKAAIYI-SKGEKPRKASSSDE 242
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPAS 138
+V+V G +++DAL I RLR+ + R + +S E +P
Sbjct: 243 LVEVFGEVENLRDALVQIVLRLRDDVL---RDSVDRQNS------EKDGKLTVATTDPLY 293
Query: 139 PGSYPSP-VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPT 197
SYP P + P+ +G +DH+ G++ V P+S + Y S +
Sbjct: 294 ASSYPLPALLPYRQQITPLG----YDHRGDIERGLE--VYPHSSL--YGYSSLQ----AI 341
Query: 198 FDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMA 257
D + S+ +G GG P +E+ IP ++
Sbjct: 342 DDGYSAVSSYASKGYGGRPPH----------------------------MEMTIPASGLS 373
Query: 258 HVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
V G++ +NL +I +ISGA++ + + K V +SGT++Q ++A++LI AFI+
Sbjct: 374 KVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENLIKAFIM 429
>gi|356572762|ref|XP_003554535.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 548
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E +++ RLLV + +IGCL+G+GG I++EMRR T A+
Sbjct: 343 SPTIEAAVRLQPRCSE-KVERDSGIISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN 401
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ S DE+VQ+ G+ +DAL H+ +RLR +F R G + S+LP
Sbjct: 402 IRIISKENLPKIASEDDEMVQISGDLDIAKDALVHVLTRLRANLF--DREGALS--SFLP 457
Query: 121 PFPEMP 126
P +P
Sbjct: 458 VLPYLP 463
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/303 (29%), Positives = 123/303 (40%), Gaps = 89/303 (29%)
Query: 4 SPAQDAVMRVHSRIAEIGF------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ +VH R+ F + GQ V A+LLV S QIGC++G+GG IV +R T
Sbjct: 109 SPAQDALFKVHDRVVAEDFHGDQDDDGGQQVTAKLLVPSDQIGCVIGKGGSIVQNIRSET 168
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
GA IR+ D P C DE+VQ+ G+ V+ AL I SRL +
Sbjct: 169 GAQIRILKDDHLPLCALSSDELVQITGDASVVKKALCQIASRLHDN-------------- 214
Query: 118 YLPPFPEMPPPPFRPRH--NPASPGSYP---SPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
P R +H A PG YP S +GP G P G+
Sbjct: 215 -----------PSRSQHLLTSAVPGVYPAGGSLIGP--------GAGAPI-------VGI 248
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
P+V YG + G T D P PRS PR ++ F+ R
Sbjct: 249 APLVG--------AYGGYK---GDTGDWP--PRSMYSA------PRDEASTKEFSVR--- 286
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
+V P + V G+ ++ IRQ SGA + V+ E ++
Sbjct: 287 ----------------LVCPTGNIGGVIGKGGMIINQIRQESGATIKVDSSTTEGDECLI 330
Query: 293 MVS 295
+S
Sbjct: 331 AIS 333
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-------SPHDE 78
+ V R + ++IG ++GRGG IV ++R T A IR+ + P C SP DE
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRI--GETVPGCEERVVTIYSPSDE 97
Query: 79 I--VQVIGNYHS-VQDALFHITSRL 100
V+ GNY S QDALF + R+
Sbjct: 98 TNAVEGGGNYVSPAQDALFKVHDRV 122
>gi|359386146|gb|AEV43362.1| poly C-binding protein [Citrus sinensis]
Length = 569
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 94/383 (24%), Positives = 149/383 (38%), Gaps = 101/383 (26%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQA---------VVARLLVHSQQIGCLLGRGGHIVSEM 53
H AQDA+++VH RI E G A + ARLLV + +GCLLG+ G ++ +
Sbjct: 125 HCAAQDALLKVHDRIIEEDLFGGMASDDDNENSTITARLLVPNNMVGCLLGKRGDVIQRL 184
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP--- 110
R TGA+IRV P D+ P C DE+VQ+ G + + AL+ +++ L + K P
Sbjct: 185 RSETGANIRVLPADRLPPCAMNTDEMVQISGKPNVAKRALYEVSTLLHQNPRKDKPPSSF 244
Query: 111 ----GPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPF---- 162
G N HS PP P H P S+P+ H M PS P+
Sbjct: 245 PQAYGGQNFHS--------PPAPMADMH-PLGNSSWPARNSSLHGM-----PSTPWMGGY 290
Query: 163 -DHQAAFSHGMDPMVPP------------------------------NSDRIPFPYGS-- 189
D + G PP N ++ G+
Sbjct: 291 GDQPSRMGSGSINSCPPGQMGEVSAEFSMKILCSAGKIGGVIGKGGFNVKQLQQETGASI 350
Query: 190 ----------ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHA 239
ER F+ +PRS T + +N+ E
Sbjct: 351 HVEDAPTDSDERVIRASAFEGLWNPRSQTIDAI-------------LQLQNKTSEFSEKG 397
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIR-------QISGANVVVNDPKPGATEGVV 292
I T +++P + + G+ ++ +R ++ GA V + DP PG++E +V
Sbjct: 398 TITT----RLLVPSSKVGCILGQGGHVINEMRRRTQADIRVVGARVKLQDPHPGSSECIV 453
Query: 293 MVSGTSDQMRAAQSLIHAFILCG 315
+ G+S+ + +A +F+ G
Sbjct: 454 DIRGSSEHLISAHGTYQSFMTSG 476
>gi|356531744|ref|XP_003534436.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 540
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 73/126 (57%), Gaps = 8/126 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E +V+ RLLV + +IGCL+G+GG IV+EMRR T A+
Sbjct: 339 SPTIEAAVRLQPRCSE-KVERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKAN 397
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ KD P+ S DE+VQ+ G+ +DAL +RLR +F +R +LP
Sbjct: 398 IRILSKDNLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSG----FLP 453
Query: 121 PFPEMP 126
P +P
Sbjct: 454 VLPYLP 459
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-----VVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
SPAQDA+ RVH R+ + V A+LLV S QIGC++G+GG IV +R TG
Sbjct: 111 SPAQDALFRVHQRVIAEDAREDEDEERNHVTAKLLVPSDQIGCVIGKGGQIVQNIRSETG 170
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
A IR+ D+ P C DE+VQ+ G V+ ALF I +++R+
Sbjct: 171 AQIRILKDDRLPPCALSTDELVQISGEAAVVKKALFQIAAQIRD 214
>gi|30685269|ref|NP_851040.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30685276|ref|NP_197031.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|110737265|dbj|BAF00580.1| hypothetical protein [Arabidopsis thaliana]
gi|110738501|dbj|BAF01176.1| hypothetical protein [Arabidopsis thaliana]
gi|332004758|gb|AED92141.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004759|gb|AED92142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 548
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/130 (40%), Positives = 78/130 (60%), Gaps = 8/130 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +AVMR+ + ++ E +V+ RLLV S +IGC+LG+GG I++EMRR T A
Sbjct: 343 YSPTIEAVMRLQPKCSD-KVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKA 401
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ K+ P+ S DE+VQ+ G ++AL ITSRLR +F R G + + +
Sbjct: 402 NIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRANVF--DREGAVS--ALM 457
Query: 120 PPFPEMPPPP 129
P P +P P
Sbjct: 458 PVLPYVPVAP 467
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ R+H R+ +E E + V A+LLV S QIGC+LGRGG IV +R T
Sbjct: 117 SPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSET 176
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
GA IR+ P C DE++Q+ G V+ AL I SRL E
Sbjct: 177 GAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-------SPHDEIV 80
V R L ++IG ++GRGG IV ++R T + IR+ + P C SP DE
Sbjct: 50 TVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRI--GEAIPGCDERVITIYSPSDE-T 106
Query: 81 QVIGNYHSV----QDALFHITSRL 100
G+ V QDALF I R+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRV 130
>gi|356516077|ref|XP_003526723.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 647
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 98/206 (47%), Gaps = 24/206 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA------------------VVARLLVHSQQIGCLLGR 45
SPAQ+A++ +H RI E G A V RL+V +GCLLG+
Sbjct: 126 SPAQEALLLIHERILESDAAFGVAEDDEEYGAGRGGGAGRDRVATRLVVSRMHVGCLLGK 185
Query: 46 GGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
GG I+ +MR T IR+ P+D PRC S +EIVQV+G+ ++V++AL I+SRLRE+
Sbjct: 186 GGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKNALVIISSRLRES- 244
Query: 105 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDH 164
+ +G + P P + P + GS S V RG + ++
Sbjct: 245 -QHRDRSHFHGRVHSPERFFSPDDDYVPH---VTSGSRRSSVDGASFGSRGSNTNSRNNN 300
Query: 165 QAAFSHGMDPMVPPNSDRIPFPYGSE 190
+ S+ M+P P D YG E
Sbjct: 301 HPSLSYAMEPGAAPVVDDAQGFYGEE 326
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 66/101 (65%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + +RI ++ + + RL+V S +I CL G+ + SE+RR TGA+I++
Sbjct: 388 PAQEALLHIQTRIVDLVLDKDNTITTRLVVPSSEIECLDGKDVSL-SEIRRLTGANIQIL 446
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
P+D P C + DE+VQ++G + +DA+ +TSRLR ++
Sbjct: 447 PRDDLPLCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLY 487
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 49/73 (67%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+EVVIP+ + + ++ S L+ I ++SGANV + + +P T+ ++ +SGT +Q
Sbjct: 568 LVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQ 627
Query: 301 MRAAQSLIHAFIL 313
AQSL+ FIL
Sbjct: 628 AERAQSLLQGFIL 640
>gi|449527609|ref|XP_004170802.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 546
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 39/330 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ+A+ ++H R+ + G V ARLLV S QIGC++G+GG IV +R T
Sbjct: 110 SPAQEALFKIHDRVVADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGKGGQIVQNIRTET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET------IFPMKRPG 111
GA +R+ D PRC DE+VQ+ G V+ AL+ I SRL + + PG
Sbjct: 170 GAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPG 229
Query: 112 P-NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMD---RGMGPSQPFDHQAA 167
++G S + P P P +P G Y +P S + R + P++
Sbjct: 230 VYSSGGSLMAPTHGAPIMGLAPLVSPY--GGYKAPREDLSSKEFSLRLICPTENIGGVIG 287
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFD---RPPSPRSWTPQGVGGGDPRGFDASS 224
+ + + S G + + S++P +A+
Sbjct: 288 KGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDSYSPT---------LEAAL 338
Query: 225 GFTPR-NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV--- 280
PR + VE + I++ TT +++P + + G+ + ++ +R+++ AN+ +
Sbjct: 339 RLQPRCSEKVE--RDSGIISFTT-RLLVPTSRIGCLIGKGGAIITELRRLTKANIRILSK 395
Query: 281 -NDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
N PK A E MV + D A ++L+H
Sbjct: 396 ENLPKV-ALEDDEMVQISGDLDVAKEALVH 424
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +A +R+ R +E E +++ RLLV + +IGCL+G+GG I++E+RR T A
Sbjct: 330 YSPTLEAALRLQPRCSE-KVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKA 388
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ K+ P+ DE+VQ+ G+ ++AL HI +RLR +F R G + + L
Sbjct: 389 NIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFD--REGALS--AVL 444
Query: 120 PPFPEMP 126
P P +P
Sbjct: 445 PVLPYLP 451
>gi|449447377|ref|XP_004141445.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 545
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 87/330 (26%), Positives = 146/330 (44%), Gaps = 39/330 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQ+A+ ++H R+ + G V ARLLV S QIGC++G+GG IV +R T
Sbjct: 110 SPAQEALFKIHDRVVADDYMDEDSEGGGHQVTARLLVPSDQIGCIIGKGGQIVQNIRTET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET------IFPMKRPG 111
GA +R+ D PRC DE+VQ+ G V+ AL+ I SRL + + PG
Sbjct: 170 GAQVRILKDDHLPRCALSSDELVQISGEPLIVKKALYQIASRLHDNPSRSQHLLASAIPG 229
Query: 112 P-NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMD---RGMGPSQPFDHQAA 167
++G S + P P P +P G Y +P S + R + P++
Sbjct: 230 VYSSGGSLMAPTHGAPIMGLAPLVSPY--GGYKAPREDLSSKEFSLRLICPTENIGGVIG 287
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFD---RPPSPRSWTPQGVGGGDPRGFDASS 224
+ + + S G + + S++P +A+
Sbjct: 288 KGGAIINQIRQETKAAIKVDSSATEGDDCLINISSKEFFEDSYSPT---------LEAAL 338
Query: 225 GFTPR-NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV--- 280
PR + VE + I++ TT +++P + + G+ + ++ +R+++ AN+ +
Sbjct: 339 RLQPRCSEKVE--RDSGIISFTT-RLLVPTSRIGCLIGKGGAIITELRRLTKANIRILSK 395
Query: 281 -NDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
N PK A E MV + D A ++L+H
Sbjct: 396 ENLPKV-ALEDDEMVQISGDLDVAKEALVH 424
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 76/127 (59%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +A +R+ R +E E +++ RLLV + +IGCL+G+GG I++E+RR T A
Sbjct: 330 YSPTLEAALRLQPRCSE-KVERDSGIISFTTRLLVPTSRIGCLIGKGGAIITELRRLTKA 388
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+IR+ K+ P+ DE+VQ+ G+ ++AL HI +RLR +F R G + + L
Sbjct: 389 NIRILSKENLPKVALEDDEMVQISGDLDVAKEALVHIVTRLRANLFD--REGALS--AVL 444
Query: 120 PPFPEMP 126
P P +P
Sbjct: 445 PVLPYLP 451
>gi|225452863|ref|XP_002283766.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|296082939|emb|CBI22240.3| unnamed protein product [Vitis vinifera]
Length = 548
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E +V+ RLLV + +IGCL+G+GG I++EMR+ T A+
Sbjct: 343 SPTIEAAVRLQPRCSE-KVERDSGIVSFTTRLLVPTSRIGCLIGKGGAIITEMRKLTKAN 401
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ S DE+VQ+ G+ +DAL +T+RLR +F R G + +++P
Sbjct: 402 IRILSKENLPKVASEDDEMVQIAGDLDVAKDALIQVTTRLRANLF--DREGAVS--AFVP 457
Query: 121 PFPEMP 126
P +P
Sbjct: 458 VLPYLP 463
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 5/102 (4%)
Query: 4 SPAQDAVMRVHSRIA--EI---GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
SPAQDA+ RVH R+ E+ E V RLLV S QIGC++G+GG I+ +R +G
Sbjct: 110 SPAQDALFRVHDRVVSEEVHGEDSEEASQVTVRLLVPSDQIGCVIGKGGQIIQSIRSESG 169
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
A +R+ D P C DE+VQ+ G V+ AL+ I SRL
Sbjct: 170 AQVRILKDDHLPSCALSSDELVQISGEPSLVRKALYQIASRL 211
>gi|7671496|emb|CAB89337.1| putative protein [Arabidopsis thaliana]
Length = 568
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 6/106 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ R+H R+ +E E + V A+LLV S QIGC+LGRGG IV +R T
Sbjct: 117 SPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNIRSET 176
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
GA IR+ P C DE++Q+ G V+ AL I SRL E
Sbjct: 177 GAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHEN 222
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/165 (32%), Positives = 78/165 (47%), Gaps = 43/165 (26%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +AVMR+ + ++ E +V+ RLLV S +IGC+LG+GG I++EMRR T A
Sbjct: 343 YSPTIEAVMRLQPKCSD-KVERDSGLVSFTTRLLVPSSRIGCILGKGGAIITEMRRMTKA 401
Query: 60 SIRVFPKDQAPRCGSPHDEIVQV-----------------------------------IG 84
+IR+ K+ P+ S DE+VQV G
Sbjct: 402 NIRILGKENLPKVASDDDEMVQVNFMVLLLKFSLQFLLSRLRYFTWSVNSNSNFDVQISG 461
Query: 85 NYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPP 129
++AL ITSRLR +F R G + + +P P +P P
Sbjct: 462 ELDVAKEALIQITSRLRANVF--DREGAVS--ALMPVLPYVPVAP 502
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-------SPHDEIV 80
V R L ++IG ++GRGG IV ++R T + IR+ + P C SP DE
Sbjct: 50 TVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRI--GEAIPGCDERVITIYSPSDE-T 106
Query: 81 QVIGNYHSV----QDALFHITSRL 100
G+ V QDALF I R+
Sbjct: 107 NAFGDGEKVLSPAQDALFRIHDRV 130
>gi|356550877|ref|XP_003543809.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 561
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 64/105 (60%), Gaps = 6/105 (5%)
Query: 4 SPAQDAVMRVHSRIAEIGF------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ +VH R+ F + GQ V A+LLV S QIGC++G+GG IV +R T
Sbjct: 109 SPAQDALFKVHDRVVAEDFHGDQDDDGGQQVTAKLLVPSDQIGCVIGKGGSIVQNIRGET 168
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IR+ D P C DE+VQ+ G+ V+ AL+ I SRL +
Sbjct: 169 GAQIRILKDDHLPMCALSSDELVQITGDAAVVKKALYQIASRLHD 213
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/126 (37%), Positives = 77/126 (61%), Gaps = 8/126 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E +++ RLLV + +IGCL+G+GG I+++MRR T A+
Sbjct: 343 SPTIEAAVRLQPRCSE-KVERDSGIISFTTRLLVPTTRIGCLIGKGGSIITDMRRLTKAN 401
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ + DE+VQ+ G+ +DAL H+ +RLR +F R G + ++LP
Sbjct: 402 IRIISKENLPKIANEDDEMVQISGDLDVAKDALVHVLTRLRANLF--DREGALS--AFLP 457
Query: 121 PFPEMP 126
P +P
Sbjct: 458 VLPYLP 463
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 44/85 (51%), Gaps = 12/85 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS-------PHDE 78
+ V R + ++IG ++GRGG IV ++R T A IR+ + P C P DE
Sbjct: 40 EDTVYRYVCPGRKIGSVIGRGGEIVKQLRVETKAKIRI--GETVPGCEERVVTIYGPSDE 97
Query: 79 I--VQVIGNYHS-VQDALFHITSRL 100
V+ GNY S QDALF + R+
Sbjct: 98 TNAVEGGGNYVSPAQDALFKVHDRV 122
>gi|356568682|ref|XP_003552539.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 543
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E +V+ RLLV + +IGCL+G+GG IV+EMRR T A+
Sbjct: 339 SPTIEAAVRLQPRCSE-KVERDSGIVSFTTRLLVPTSRIGCLIGKGGTIVTEMRRLTKAN 397
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ S DE+VQ+ G+ +DAL +RLR +F +R +LP
Sbjct: 398 IRILSKENLPKIASEDDEMVQISGDLDVAKDALVQALTRLRANLFDKERAVSG----FLP 453
Query: 121 PFPEMPP 127
P +P
Sbjct: 454 VLPYLPA 460
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 5/104 (4%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-----VVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
SPAQDA+ RVH R+ + V A+LLV S QIGC++G+GG IV +R TG
Sbjct: 111 SPAQDALFRVHQRVIAEDAREDEDDERNHVTAKLLVPSDQIGCVIGKGGQIVQNIRSETG 170
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
A IR+ D+ P C +DE+VQ+ G V+ ALF I +++R+
Sbjct: 171 AQIRILKDDRLPPCALSNDELVQISGEAAVVKKALFQIAAQIRD 214
>gi|110289326|gb|AAP54423.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 677
Score = 90.9 bits (224), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 10/110 (9%)
Query: 3 HSPAQDAVMRVHSRIAE-------IGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +IA I E + V+AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R TGA IRV P + P+C DE+VQ+ G+ V+ AL+ I++RL +
Sbjct: 180 LRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEISTRLHQ 229
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+++ + + RL+V S ++GC++G GG +++EMRR TGA IRV
Sbjct: 356 SPTIEALILLHSKVSTLA--ENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRV 413
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ K P+ S +E+VQV G + AL I SRLR
Sbjct: 414 YSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR 451
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 53/98 (54%), Gaps = 10/98 (10%)
Query: 12 RVHSRIAE--IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
R++SR + I EP + + R+L ++IG +LGRGG IV +R T A IRV D
Sbjct: 29 RLNSRHDDGTISSEPIETIY-RILCPVKKIGSVLGRGGDIVKALRDTTKAKIRV--ADSI 85
Query: 70 PRCGSPHDEIVQVIGNYHS-VQDALFHITSRLRETIFP 106
P DE V +I NY S ++A +I++ E + P
Sbjct: 86 PGA----DERVIIIFNYSSQTEEAAQNISTDGFEDMKP 119
>gi|218192926|gb|EEC75353.1| hypothetical protein OsI_11789 [Oryza sativa Indica Group]
Length = 478
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 12/171 (7%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAV---VARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A + + R +E +P A+ RLLV + +IGCL+G+GG I++E+RR + A+
Sbjct: 275 SPTINAAVHLQPRCSE-KTDPESAIPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRAN 333
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ + +E+VQ+ G+ V+ AL IT+RL+ F +R G +G P
Sbjct: 334 IRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF--EREGALSG---FP 388
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVG---PFHSMDRGMGPSQPFDHQAAF 168
P P P P G P+G P+ S RG P D A++
Sbjct: 389 PVIPYHPLPVGVSEGPKYLGRDTKPLGHDYPYSSGYRGSDDISPIDSYASY 439
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 5 PAQDAVMRVHSRIA---EIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH +++ +IG E V RLLV S QIGC++G+GGHI+ +R T
Sbjct: 44 PAQDALFRVHEKLSIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDT 103
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IRV + P C DE++Q+ G+ V+ AL ++SRL +
Sbjct: 104 GAHIRVLSNENLPACAISGDELLQISGDSTVVRKALLQVSSRLHD 148
>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
Length = 861
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 146/330 (44%), Gaps = 71/330 (21%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+ + + + RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 563 SPTIEALILLHSKASTLA--ENHQLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRV 620
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
+ K P+ S +E+VQ ++F T L+ R GP + P+
Sbjct: 621 YSKADKPKYLSFDEELVQA---------SVFSFTLGLQNL-----RTGPAH-----DPYT 661
Query: 124 EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQ--AAFSHGMDPM------ 175
P F R P+ S V P S +R ++ + + ++ S G D M
Sbjct: 662 VYPVEYFSKREYPSG----SSKVAPSASYERYAATTRLPNGELPSSISPGADYMSCRSYL 717
Query: 176 --VPPN--SDRIPFPYGSERPGH------GPTFDRPPSPRSWT---PQGVGGGDPRGFDA 222
VP + S+R+ G R G+ G T + +T Q G D R
Sbjct: 718 DQVPTDRYSNRVTLQLGLSRAGNSNVQQLGITRAGNSNAYDYTEAAEQIHGREDYRRLSG 777
Query: 223 SSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 282
+G+ P S N ++V N +LS + ISGA V +++
Sbjct: 778 LTGY-----PGGSSNCG-------FQIV-------------NWSLSLVLVISGARVKLHE 812
Query: 283 PKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
PG++E +V + G DQ++AAQSL+ FI
Sbjct: 813 AHPGSSESIVEIQGIPDQVKAAQSLLQGFI 842
>gi|115482708|ref|NP_001064947.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|22128716|gb|AAM92828.1| putative RNA-binding protein [Oryza sativa Japonica Group]
gi|110289325|gb|ABB47821.2| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639556|dbj|BAF26861.1| Os10g0495000 [Oryza sativa Japonica Group]
gi|215694845|dbj|BAG90036.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 762
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 10/110 (9%)
Query: 3 HSPAQDAVMRVHSRIAE-------IGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +IA I E + V+AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R TGA IRV P + P+C DE+VQ+ G+ V+ AL+ I++RL +
Sbjct: 180 LRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEISTRLHQ 229
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+++ + + RL+V S ++GC++G GG +++EMRR TGA IRV
Sbjct: 356 SPTIEALILLHSKVSTLA--ENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRV 413
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ K P+ S +E+VQV G + AL I SRLR
Sbjct: 414 YSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR 451
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
++E IP Y+ V G NL+ IRQISGA V +++ PG++E +V + G DQ++AAQ
Sbjct: 677 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 736
Query: 306 SLIHAFI 312
SL+ FI
Sbjct: 737 SLLQGFI 743
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
I EP + + R+L ++IG +LGRGG IV +R T A IRV D P DE
Sbjct: 39 ISSEPIETIY-RILCPVKKIGSVLGRGGDIVKALRDTTKAKIRV--ADSIPGA----DER 91
Query: 80 VQVIGNYHS-VQDALFHITSRLRETIFP 106
V +I NY S ++A +I++ E + P
Sbjct: 92 VIIIFNYSSQTEEAAQNISTDGFEDMKP 119
>gi|125532489|gb|EAY79054.1| hypothetical protein OsI_34164 [Oryza sativa Indica Group]
gi|125575260|gb|EAZ16544.1| hypothetical protein OsJ_32017 [Oryza sativa Japonica Group]
Length = 769
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 68/110 (61%), Gaps = 10/110 (9%)
Query: 3 HSPAQDAVMRVHSRIAE-------IGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +IA I E + V+AR+LV Q+GCLLG+GG I+ +
Sbjct: 127 HCFAQDALLKIHDKIAADEDLHAGIVHEKSENVDDVIARILVPGNQVGCLLGKGGSIIQQ 186
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R TGA IRV P + P+C DE+VQ+ G+ V+ AL+ I++RL +
Sbjct: 187 LRNDTGAGIRVLPSENLPQCALKSDELVQISGSSSLVRKALYEISTRLHQ 236
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+++ + + RL+V S ++GC++G GG +++EMRR TGA IRV
Sbjct: 363 SPTIEALILLHSKVSTLA--ENHHLTTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRV 420
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ K P+ S +E+VQV G + AL I SRLR
Sbjct: 421 YSKADKPKYLSFDEELVQVAGLPAIARGALTEIASRLR 458
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
++E IP Y+ V G NL+ IRQISGA V +++ PG++E +V + G DQ++AAQ
Sbjct: 684 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 743
Query: 306 SLIHAFI 312
SL+ FI
Sbjct: 744 SLLQGFI 750
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
I EP + + R+L ++IG +LGRGG IV +R T A IRV D P DE
Sbjct: 46 ISSEPIETIY-RILCPVKKIGSVLGRGGDIVKALRDTTKAKIRV--ADSIPGA----DER 98
Query: 80 VQVIGNYHS-VQDALFHITSRLRETIFP 106
V +I NY S ++A +I++ E + P
Sbjct: 99 VIIIFNYSSQTEEAAQNISTDGFEDMKP 126
>gi|242039239|ref|XP_002467014.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
gi|241920868|gb|EER94012.1| hypothetical protein SORBIDRAFT_01g018300 [Sorghum bicolor]
Length = 542
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 10/108 (9%)
Query: 3 HSPAQDAVMRVHSRIA----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +I E E V AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIVADEIHDGVAHEEKSESADDVTARILVQGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
+R TGA IRV P + P+C DE+VQ+ G V+ AL+ I++RL
Sbjct: 180 LRSDTGAGIRVLPSEDLPQCALKSDELVQISGAPSLVRKALYEISTRL 227
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPA +A++ +H +++ P + RL+V S ++GC+LG GG +++EMRR TGA I
Sbjct: 355 SPAIEALILLHDKVSA----PSEKRHSSTRLVVPSSKVGCILGEGGKVITEMRRRTGAEI 410
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
RV+ K P+ S DE+VQ G H +D
Sbjct: 411 RVYSKADKPKYLSFDDELVQTAGQIHGRED 440
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 17/100 (17%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQ 272
G D RG +++GF +TIE+ IP + + G NL+ IRQ
Sbjct: 437 GREDYRGLTSATGFL-----------------STIELRIPNSSLESIVGVGGVNLAEIRQ 479
Query: 273 ISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
ISGA + +++ G++E VV + GT ++ +AAQSL+ FI
Sbjct: 480 ISGARLRLHEAHAGSSESVVEIQGTLEEAKAAQSLLQGFI 519
Score = 37.4 bits (85), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
+ R+L ++IG +LGRGG +V +R T A IRV D P DE V +I NY +
Sbjct: 44 IYRILCPVKKIGSVLGRGGDVVKALREETKAKIRV--ADPIPGA----DERVIIIFNYQN 97
>gi|116787223|gb|ABK24418.1| unknown [Picea sitchensis]
gi|224286491|gb|ACN40952.1| unknown [Picea sitchensis]
Length = 481
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 95/325 (29%), Positives = 140/325 (43%), Gaps = 59/325 (18%)
Query: 4 SPAQDAVMRVHSRIAEIG----FEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSE 52
SPA D ++RVH RI E G E G+A + RLLV Q G L+GR G +
Sbjct: 145 SPAMDGILRVHKRIIEGGPDGRGELGRAQQGGSGTISTRLLVAGTQAGSLIGRQGATIKA 204
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE-----TIFPM 107
++ +GA +RV + P C D +V+V G SV A+ I S LR+ ++ P+
Sbjct: 205 IQEGSGAIVRVLAAEDLPFCALADDRLVEVQGEAGSVHKAVELIVSHLRKFLVDRSVLPL 264
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA 167
G+ P E P HN +S S PS G G+G +Q +A
Sbjct: 265 FEADRTIGNQ---PQIEENLPHQSWGHNQSS--SVPSSGGA------GLGNTQYMS--SA 311
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFT 227
F H D PP+ D P + V G DP + +G +
Sbjct: 312 FQH--DNYYPPS-------------------DLPLESQGHHGLSVYGRDP----SLAGHS 346
Query: 228 PRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
N P A ++T T + IP Y + G +N+S++R+ SGA + V + +
Sbjct: 347 VANPP-----PAPVITQVTQHMQIPLSYADAIIGTAGANISYMRRNSGATIAVQETRGVP 401
Query: 288 TEGVVMVSGTSDQMRAAQSLIHAFI 312
E V + GT+ Q++ AQ LI F+
Sbjct: 402 GEMTVEIRGTATQVQTAQQLIQNFM 426
>gi|125544080|gb|EAY90219.1| hypothetical protein OsI_11787 [Oryza sativa Indica Group]
Length = 542
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 12/171 (7%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAV---VARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A + + R +E +P A+ RLLV + +IGCL+G+GG I++E+RR + A+
Sbjct: 339 SPTINAAVHLQPRCSE-KTDPESAIPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRAN 397
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ + +E+VQ+ G+ V+ AL IT+RL+ F +R G +G P
Sbjct: 398 IRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF--EREGALSG---FP 452
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVG---PFHSMDRGMGPSQPFDHQAAF 168
P P P P G P+G P+ S RG P D A++
Sbjct: 453 PVIPYHPLPVGVSEGPKYLGRDTKPLGHDYPYSSGYRGSDDISPIDSYASY 503
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 5 PAQDAVMRVHSRIA---EIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH +++ +IG E V RLLV S QIGC++G+GGHI+ +R T
Sbjct: 108 PAQDALFRVHEKLSIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDT 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IRV + P C DE++Q+ G+ V+ AL ++SRL +
Sbjct: 168 GAHIRVLSNENLPACAISGDELLQISGDSTVVRKALLQVSSRLHD 212
>gi|414870928|tpg|DAA49485.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 770
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 3 HSPAQDAVMRVHSRIA----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +I + E V AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R TGA IRV P + P+C DE+VQ+ G V+ AL+ I++RL +
Sbjct: 180 LRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQ 229
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPA +A++ +H +++ P + RL+V S ++GC++G GG ++++MRR TGA I
Sbjct: 354 SPAIEALILLHDKVSA----PSEKHHSSTRLVVPSSKVGCIIGEGGKVITDMRRRTGAEI 409
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
RV+ K P+ S DE+VQV G + AL I SRLR
Sbjct: 410 RVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 449
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 681 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 740
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 741 QSLLQGFI 748
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L ++IG +LGRGG IV +R T A IRV D P DE V +I NY
Sbjct: 43 TIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRV--ADSIPGA----DERVIIIFNYQ 96
Query: 88 S 88
+
Sbjct: 97 N 97
>gi|414870926|tpg|DAA49483.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 541
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/159 (35%), Positives = 78/159 (49%), Gaps = 34/159 (21%)
Query: 3 HSPAQDAVMRVHSRIA--EI--------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +I EI E V AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL----RETIFPM- 107
+R TGA IRV P + P+C DE+VQ+ G V+ AL+ I++RL R+ P+
Sbjct: 180 LRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQHPRKENRPLE 239
Query: 108 ---------KRPGPNNGHSY----------LPPFPEMPP 127
KR P H Y PP P + P
Sbjct: 240 EIIDASTQRKRESPTLQHEYSMLPHLHSDHTPPIPLLDP 278
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPA +A++ +H +++ P + RL+V S ++GC++G GG ++++MRR TGA I
Sbjct: 354 SPAIEALILLHDKVSA----PSEKHHSSTRLVVPSSKVGCIIGEGGKVITDMRRRTGAEI 409
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
RV+ K P+ S DE+VQ G H +D
Sbjct: 410 RVYSKADKPKYLSFDDELVQAAGQIHGRED 439
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 452 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 511
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 512 QSLLQGFI 519
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L ++IG +LGRGG IV +R T A IRV D P DE V +I NY
Sbjct: 43 TIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRV--ADSIPGA----DERVIIIFNYQ 96
Query: 88 S 88
+
Sbjct: 97 N 97
>gi|195655947|gb|ACG47441.1| nucleic acid binding protein [Zea mays]
gi|414870927|tpg|DAA49484.1| TPA: nucleic acid binding protein [Zea mays]
Length = 769
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 64/110 (58%), Gaps = 10/110 (9%)
Query: 3 HSPAQDAVMRVHSRIA----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
H AQDA++++H +I + E V AR+LV Q+GCLLG+GG I+ +
Sbjct: 120 HCFAQDALLKIHDKIVSDEIHDEVANDEKSESADDVTARILVQGNQVGCLLGKGGSIIQQ 179
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R TGA IRV P + P+C DE+VQ+ G V+ AL+ I++RL +
Sbjct: 180 LRSNTGAGIRVLPSENLPQCALKSDELVQISGAPSLVRKALYEISTRLHQ 229
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 6/100 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA--VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SPA +A++ +H +++ P + RL+V S ++GC++G GG ++++MRR TGA I
Sbjct: 354 SPAIEALILLHDKVSA----PSEKHHSSTRLVVPSSKVGCIIGEGGKVITDMRRRTGAEI 409
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
RV+ K P+ S DE+VQV G + AL I SRLR
Sbjct: 410 RVYSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 449
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 680 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 739
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 740 QSLLQGFI 747
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L ++IG +LGRGG IV +R T A IRV D P DE V +I NY
Sbjct: 43 TIYRILCPVKKIGSVLGRGGDIVKALREETKAKIRV--ADSIPGA----DERVIIIFNYQ 96
Query: 88 S 88
+
Sbjct: 97 N 97
>gi|357496471|ref|XP_003618524.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493539|gb|AES74742.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 553
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A + + R +E E +++ RLLV S +IGCL+G+GG I++EMRR T ++
Sbjct: 348 SPTVEAAVLLQPRCSEKS-ERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSN 406
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ S DE+VQ+ G+ +DAL + +RLR +F + P +LP
Sbjct: 407 IRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPG----FLP 462
Query: 121 PFPEMPPP 128
P +P P
Sbjct: 463 VLPYIPAP 470
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 4 SPAQDAVMRVHSRIAEIGF------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPA+DA+ ++H R+ E G V A+LLV S QIGC+LG+GG IV +R T
Sbjct: 114 SPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSET 173
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IR+ D P C DE+VQ+ G+ V+ AL I SRL
Sbjct: 174 GAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>gi|357496469|ref|XP_003618523.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355493538|gb|AES74741.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 569
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 8/128 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A + + R +E E +++ RLLV S +IGCL+G+GG I++EMRR T ++
Sbjct: 348 SPTVEAAVLLQPRCSEKS-ERDSGIISFTTRLLVSSSRIGCLIGKGGSIITEMRRLTKSN 406
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ S DE+VQ+ G+ +DAL + +RLR +F + P +LP
Sbjct: 407 IRILSKENLPKIASDDDEMVQISGDLDVAKDALVQVLTRLRANLFDREGAVPG----FLP 462
Query: 121 PFPEMPPP 128
P +P P
Sbjct: 463 VLPYIPAP 470
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 4 SPAQDAVMRVHSRIAEIGF------EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPA+DA+ ++H R+ E G V A+LLV S QIGC+LG+GG IV +R T
Sbjct: 114 SPAEDALFKIHDRVVAEDLHSDQEEEGGPQVNAKLLVPSDQIGCVLGKGGQIVQNLRSET 173
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IR+ D P C DE+VQ+ G+ V+ AL I SRL
Sbjct: 174 GAQIRILKDDHVPACALRSDELVQISGDAAVVKKALHQIASRL 216
>gi|357501947|ref|XP_003621262.1| KH domain-containing protein [Medicago truncatula]
gi|355496277|gb|AES77480.1| KH domain-containing protein [Medicago truncatula]
Length = 571
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
+RLLV S +IGCL+G+GG I++EMRR T A+IR+ K+ P+ + DE+VQ+ G
Sbjct: 384 SRLLVSSSRIGCLIGKGGSIITEMRRLTKANIRILSKEDLPKIATEDDEMVQISGELDIA 443
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPP-FPEMPPPPFRPRHNPASPGSYPSPVGP 148
+DAL + +RLR +F +R + S LPP +P P P
Sbjct: 444 KDALLQVLTRLRANLFDKER----SVSSLLPPVLAYLPASPEGPDSFSYEGRDGRRHGRG 499
Query: 149 FHSMDRGMGPSQPF 162
+S G G S F
Sbjct: 500 GYSYSDGYGGSSDF 513
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 61/109 (55%), Gaps = 13/109 (11%)
Query: 5 PAQDAVMRVHSRI----------AEIGFEP---GQAVVARLLVHSQQIGCLLGRGGHIVS 51
PA DA++R+H ++ ++ E G V A+LLV S QIGC++G+GG IV
Sbjct: 117 PAMDALVRIHQKVIAEDLRGVEDEDVDMEKVDGGDLVTAKLLVASDQIGCVIGKGGQIVQ 176
Query: 52 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
+R TGA IR+ D+ P C DE+VQ+ G V+ AL + +RL
Sbjct: 177 NIRSETGAQIRILKDDRLPLCALNSDELVQISGEIAVVKKALIQVAARL 225
>gi|115453243|ref|NP_001050222.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|18921324|gb|AAL82529.1|AC084766_15 putative nucleic acid binding protein [Oryza sativa Japonica Group]
gi|108708431|gb|ABF96226.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|108708432|gb|ABF96227.1| KH domain-containing protein, putative, expressed [Oryza sativa
Japonica Group]
gi|113548693|dbj|BAF12136.1| Os03g0376800 [Oryza sativa Japonica Group]
gi|125586438|gb|EAZ27102.1| hypothetical protein OsJ_11034 [Oryza sativa Japonica Group]
gi|215686826|dbj|BAG89676.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215695345|dbj|BAG90536.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704897|dbj|BAG94925.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 542
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 89/171 (52%), Gaps = 12/171 (7%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAV---VARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A + + R +E +P A+ RLLV + +IGCL+G+GG I++E+RR + A+
Sbjct: 339 SPTINAAVHLQPRCSE-KTDPESAIPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRAN 397
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ + +E+VQ+ G+ V+ AL IT+RL+ F +R G +G P
Sbjct: 398 IRILSKENVPKVAAEDEEMVQISGDLDVVRHALLQITTRLKANFF--EREGALSG---FP 452
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVG---PFHSMDRGMGPSQPFDHQAAF 168
P P P P G P+G P+ S RG P D A++
Sbjct: 453 PVIPYHPLPVGVSEGPKYLGRDTKPLGHDYPYSSGYRGSDDIGPIDSYASY 503
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 64/105 (60%), Gaps = 7/105 (6%)
Query: 5 PAQDAVMRVHSRIA---EIGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH +++ +IG E V RLLV S QIGC++G+GGHI+ +R T
Sbjct: 108 PAQDALFRVHEKLSIDDDIGNEESDEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDT 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
GA IRV + P C DE++Q+ G+ V+ AL ++SRL +
Sbjct: 168 GAHIRVLSNENLPACAISGDELLQISGDSTVVRKALLQVSSRLHD 212
>gi|110224788|emb|CAL07994.1| putative nucleic acid binding protein [Platanus x acerifolia]
Length = 288
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 73/123 (59%), Gaps = 8/123 (6%)
Query: 4 SPAQDAVMRVHSRIAEIG-FEPGQAV-VARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ + +E E G + RLLV + +IGCL+G+GG I+SEMR+ T A+I
Sbjct: 156 SPTIDAAVRLQPKCSEKSDRESGDSTFTTRLLVPTSRIGCLIGKGGSIISEMRKVTKANI 215
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH----S 117
R+ K+ P+ S DE+VQ+ G+ ++AL +T+RL+ F +R G + S
Sbjct: 216 RILSKENLPKVASEDDEMVQITGDLDVARNALIQVTTRLKTNFF--EREGALSAFPPPLS 273
Query: 118 YLP 120
YLP
Sbjct: 274 YLP 276
>gi|357463999|ref|XP_003602281.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355491329|gb|AES72532.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 646
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 14/114 (12%)
Query: 4 SPAQDAVMRVHSRIAEI--GFEPGQA-----------VVARLLVHSQQIGCLLGRGGHIV 50
SPAQ+A++ +H R+ E GFE + V +RL+V +G LLG+GG I+
Sbjct: 128 SPAQEALLLIHERLLENDPGFEDEEDYGGGRGGGGKRVSSRLVVSKMHVGSLLGKGGKII 187
Query: 51 SEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+MR T IR+ P+D PRC S +EIVQV G+ H+V++A I+SRLRE+
Sbjct: 188 EQMRIETKTQIRILPRDSYLPRCVSMSEEIVQVTGDIHNVKNAFLVISSRLRES 241
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 63/101 (62%), Gaps = 4/101 (3%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++ + RL+V S I CL G+ + SE+ R+TGAS+++
Sbjct: 392 PAQEALLHIQTHIVDLS---DSIITTRLIVPSSDIECLDGKNASL-SEIERSTGASVQIL 447
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
P+++ P C + DE+VQ++G + ++ + +T++LR ++
Sbjct: 448 PREELPPCIANTDELVQIVGEIEAARNVILDVTAKLRSYVY 488
>gi|297814608|ref|XP_002875187.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297321025|gb|EFH51446.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 469
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 11/138 (7%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ +R +E +G + A+ R+L+ S Q+GCL+G+GG ++SEMR T A+
Sbjct: 303 QSPTVNAALRLQTRCSEKVGKDSSDSAISTRVLIPSSQVGCLIGKGGALISEMRSVTKAN 362
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+F + PR ++E+VQ+ G+ + AL + RLR +F M R G LP
Sbjct: 363 IRIFQGEDVPRIARENEEMVQITGSLDAAIKALTQVMLRLRANVFDMDR-----GLVLLP 417
Query: 121 PF----PEMPPPPFRPRH 134
F + +PRH
Sbjct: 418 TFFPYISQTIETSSKPRH 435
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 60/110 (54%), Gaps = 15/110 (13%)
Query: 5 PAQDAVMRVHSRIAEIGFEPG------------QAVVARLLVHSQQIGCLLGRGGHIVSE 52
PA DA+ +VH I F+ Q V R+LV S QIGCL+G+GG ++ +
Sbjct: 86 PAFDALFKVHDMIVAEEFDNDGDYDNGDEYSERQTVTVRMLVPSDQIGCLIGKGGQVIQK 145
Query: 53 MRRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRL 100
+R T A IRV D P C HDE++Q+IG+ +V++AL+ + L
Sbjct: 146 LRNDTNAQIRVI-NDNLPICALALSHDELLQIIGDPSAVREALYQVAFLL 194
>gi|63115359|gb|AAY33858.1| KH domain-containing protein [Betula platyphylla]
Length = 166
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 62/96 (64%), Gaps = 4/96 (4%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLV + +IGCL+G+GG IV+EMRR T A+IR+ K+ P+ S DE+VQ+ G+ +
Sbjct: 9 RLLVPTSRIGCLIGKGGAIVTEMRRLTKANIRILSKENLPKVASEDDEMVQISGDLDVAK 68
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMP 126
DAL + +RLR +F R G + ++LP P +P
Sbjct: 69 DALMQVVTRLRANLFD--REGAVS--TFLPVLPYLP 100
>gi|297849822|ref|XP_002892792.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
gi|297338634|gb|EFH69051.1| hypothetical protein ARALYDRAFT_471578 [Arabidopsis lyrata subsp.
lyrata]
Length = 477
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SPA +A +R+ R +E +G + A+ RLLV S QIGCL+G+GG ++SEMR T A+
Sbjct: 325 QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 384
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ +E+VQ+ GN + AL + RLR F M ++G LP
Sbjct: 385 IRILQKEDVPKIAREDEEMVQITGNPDAAMKALTQVILRLRANSFDM-----DHGLVLLP 439
Query: 121 P-FPEMP 126
FP +P
Sbjct: 440 TSFPYIP 446
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 13/108 (12%)
Query: 5 PAQDAVMRVHSRIA----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
PA DA+ +VH + + Q V R+LV S QIGC++G+GG ++ +R
Sbjct: 112 PALDALFKVHDMVVADIDHDDGNDDDDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLR 171
Query: 55 RATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRL 100
T A IRV KD P C HDE++Q+IG V++AL+ + S L
Sbjct: 172 NDTNAQIRVI-KDHLPSCALTLSHDELLQIIGEPLVVREALYQVASLL 218
>gi|296086352|emb|CBI31941.3| unnamed protein product [Vitis vinifera]
Length = 583
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH RI A+ E Q V R+LV S QIGC++G+GG ++ +R T
Sbjct: 176 SPAQDALFRVHDRIVAGELPADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSET 235
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
A IR+ + P C DE++Q+IG+ V+ AL + SRL E
Sbjct: 236 RAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHE 280
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 4 SPAQDAVMRVHSRIAEIG-FEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E E +VV RLLV S +IGCL+G+GG I+SEMR T A+I
Sbjct: 379 SPTIDAALRLQPRCSEKAERESSDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANI 438
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
R+ K+ P+ S DE+VQ+ G + +AL +T RL+ +F
Sbjct: 439 RILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLF 482
>gi|147853553|emb|CAN81693.1| hypothetical protein VITISV_009249 [Vitis vinifera]
Length = 543
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 4 SPAQDAVMRVHSRIAEIGF-EPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E E +VV RLLV S +IGCL+G+GG I+SEMR T A+I
Sbjct: 354 SPTIDAALRLQPRCSEKAERESSDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANI 413
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
R+ K+ P+ S DE+VQ+ G + +AL +T RL+ +F
Sbjct: 414 RILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLF 457
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/367 (24%), Positives = 143/367 (38%), Gaps = 84/367 (22%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH RI A+ E Q V R+LV S QIGC++G+GG ++ +R T
Sbjct: 110 SPAQDALFRVHDRIVAGELPADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIV------------QVIGNYHSVQDALFHITSRLRE--- 102
A IR+ + P C DE++ Q+IG+ V+ AL + SRL E
Sbjct: 170 RAQIRILKDEHLPPCALSSDELLQAFGNVFWALTSQIIGDASVVRKALHQLASRLHENPS 229
Query: 103 -TIFPMKRPGPN---NGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG----PFHSMDR 154
+ + PN +G +++ P + P P S G Y G ++S R
Sbjct: 230 RSQHLLLSSSPNMYQSGGTFMTPNIDAPLVGVAPLM--GSYGGYKGDTGDWSHSYYSARR 287
Query: 155 GMGPSQPFD-------------------------HQAAFSHGMDPMVPPNSDRIPFPYGS 189
++ F ++ S +D D I F
Sbjct: 288 DESSAKEFSLRLVCPTGNIGGVIGKGGGIIKQIRQESGASIKVDSSSAEGDDCIIFISAK 347
Query: 190 ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEV 249
E F PSP DA+ PR E + + T +
Sbjct: 348 E-------FFEDPSPT--------------IDAALRLQPRCS--EKAERESSDSVVTTRL 384
Query: 250 VIPQLYMAHVYGENNSNLSHIRQISGANVVV----NDPKPGATEGVVMVSGTSDQMRAAQ 305
++P + + G+ + +S +R ++ AN+ + N PK A+E MV T + A+
Sbjct: 385 LVPSSRIGCLIGKGGAIISEMRSVTRANIRILSKENLPKV-ASEDDEMVQITGELNVASN 443
Query: 306 SLIHAFI 312
+L+ +
Sbjct: 444 ALLQVTL 450
>gi|413933964|gb|AFW68515.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 768
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 3 HSPAQDAVMRVHSRIA------EIGF-EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
H AQDA++++H +I E+ E V AR+LV Q+GCLLG+GG I+ ++R
Sbjct: 120 HCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQGNQVGCLLGKGGSIIQQLRS 179
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
TGA IRV + P+C DE+VQ+ G V+ AL+ I++RL
Sbjct: 180 DTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYEISTRL 224
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 15/134 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +H +++ + + RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 351 SPTIEALILLHDKVSASSEKHHSST--RLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV 408
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
+ K P+ S DE+VQV G + AL I SRLR N
Sbjct: 409 YSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLRTRTLRDTSTANN---------- 458
Query: 124 EMPPPPFRPRHNPA 137
PPPF P +P
Sbjct: 459 ---PPPFAPSDDPT 469
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S+TIE+ IP + + G NL+ IRQISGA + +++ G++E VV + GT DQ +A
Sbjct: 679 SSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSESVVEIQGTLDQAKA 738
Query: 304 AQSLIHAFI 312
AQSL+ FI
Sbjct: 739 AQSLLEGFI 747
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 2 RHSPAQDAV-MRVHSRIAEIGF--EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
RHS + D R+ SR + EP + + R+L +++IG +LGRGG IV +R T
Sbjct: 15 RHSNSDDGKRKRLSSRHDDTSMSSEPIETIY-RILCPAKKIGSVLGRGGDIVKALREETK 73
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
A IRV D P DE V +I NY +
Sbjct: 74 AKIRV--ADSIPGA----DERVIIIFNYQN 97
>gi|357485457|ref|XP_003613016.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355514351|gb|AES95974.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 596
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 137/332 (41%), Gaps = 57/332 (17%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV-- 82
G AVV RLL + G ++G+ G IV TGASI VF AP G + IV +
Sbjct: 272 GHAVVFRLLCSNNVAGSVIGKKGSIVRTFEIRTGASI-VF----APPLGQYEERIVTISA 326
Query: 83 IGNYHS----VQDALF---------HI--------------TSRLRETIFPMKRPGPNNG 115
N S QDA+ HI T+RL T + N G
Sbjct: 327 FENLESSNSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEG 386
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPV-----GPFHSMDRGMGP------SQPFDH 164
+ ++ + H P + + V G + ++ + P +
Sbjct: 387 Q-VISELRQVSGADIQLLHGEPIPNASDNDVVVQITGGYRCVENALRKITSIIRDNPLTN 445
Query: 165 QAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF-DAS 223
+ + P P N D + + + + P F R P PQ G + +
Sbjct: 446 ELLAEAKIKPSFPLNKDTVRSKFITRKKSSFP-FARVP------PQNAGVYQAKKVTENG 498
Query: 224 SGFTPRNRPVE--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
T VE GN A +T+TT+E+++ + VYGE+ NL IRQISGA+V V
Sbjct: 499 ESHTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGADVTVF 558
Query: 282 DP-KPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
DP G + G V++SGT DQ AAQSL+ AFI
Sbjct: 559 DPSSTGTSGGKVVISGTPDQTFAAQSLLQAFI 590
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 9/108 (8%)
Query: 3 HSPAQDAVMRVHSRIAEI----GFEPGQAV----VARLLVHSQQIGCLLGRGGHIVSEMR 54
+SPAQDAV+ V +RIAE GF+P AV ARLL+ + + L G G ++SE+R
Sbjct: 334 NSPAQDAVILVFTRIAEDHIRNGFQPATAVESPVTARLLITTSTLHLLTGNEGQVISELR 393
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+ +GA I++ + P S +D +VQ+ G Y V++AL ITS +R+
Sbjct: 394 QVSGADIQLLHGEPIPN-ASDNDVVVQITGGYRCVENALRKITSIIRD 440
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 62/104 (59%), Gaps = 5/104 (4%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQ--AVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
M S AQ+ V+RV R+ + E G V +LL HS Q+G ++G+GG +S +R +G
Sbjct: 105 MEVSNAQEGVVRVFDRVWGLESEKGGNGEVYGKLLAHSSQVGAIVGKGGKNISNIRNNSG 164
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
++IRV P AP C + +E++ + G +V+ AL +++ L++
Sbjct: 165 SNIRVCP---APHCAAKDEELILITGESLAVKKALIYVSYCLQD 205
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
PGQ + RL+ HS +G L+G G IVS++RR TG I
Sbjct: 36 PGQ-IAFRLVCHSSTVGGLIGSSGSIVSQLRRETGCKI 72
>gi|308081899|ref|NP_001183640.1| uncharacterized protein LOC100502234 [Zea mays]
gi|238013618|gb|ACR37844.1| unknown [Zea mays]
gi|414867002|tpg|DAA45559.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867003|tpg|DAA45560.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
gi|414867004|tpg|DAA45561.1| TPA: hypothetical protein ZEAMMB73_773291 [Zea mays]
Length = 541
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/103 (44%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
Query: 5 PAQDAVMRVHSRIAE---IGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH R+A +G E + V RLLV S QIGC++G+GG I+ +R T
Sbjct: 106 PAQDALFRVHERLASDEGLGNEDSEEISPQVTVRLLVPSDQIGCIIGKGGQIIQGIRSET 165
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IRV D P C DE++Q+ G+ V+ AL ++SRL
Sbjct: 166 GAQIRVLSNDHIPACAISGDELLQISGDTVVVRKALHQVSSRL 208
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/148 (34%), Positives = 77/148 (52%), Gaps = 7/148 (4%)
Query: 4 SPAQDAVMRVHSRIAEIG-FEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E E Q+ RLLV + +IGCL+G+GG I++E+RR + A++
Sbjct: 339 SPTIDAAVRLQPRCSEKSDLESAEQSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANV 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K+ P+ + DE+VQ+ G ++AL I +RL+ F +R G S PP
Sbjct: 399 RILSKENVPKVAAEDDEMVQITGGLDVARNALVQIATRLKANFF--EREGS---LSAFPP 453
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPF 149
P P P G PVG +
Sbjct: 454 VIPYHPLPAGVSDEPKYLGRDTKPVGHY 481
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 22 FEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
+ PG V R L S++IG ++GRGG I ++R T A IR+ + P C I
Sbjct: 31 YAPGPDDTVYRYLCASRKIGSIIGRGGEIAKQLRTETQAKIRI--GESVPGCDERVVTIF 88
Query: 81 QVIGNYHSV----------QDALFHITSRL 100
+++ QDALF + RL
Sbjct: 89 STSRKTNTIDGAEDEVCPAQDALFRVHERL 118
>gi|359473301|ref|XP_002272287.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 517
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH RI A+ E Q V R+LV S QIGC++G+GG ++ +R T
Sbjct: 110 SPAQDALFRVHDRIVAGELPADEEPEEAQQVTVRMLVPSDQIGCVIGKGGQVIQNIRSET 169
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
A IR+ + P C DE++Q+IG+ V+ AL + SRL E
Sbjct: 170 RAQIRILKDEHLPPCALSSDELLQIIGDASVVRKALHQLASRLHEN 215
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 2/104 (1%)
Query: 4 SPAQDAVMRVHSRIAEIG-FEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E E +VV RLLV S +IGCL+G+GG I+SEMR T A+I
Sbjct: 313 SPTIDAALRLQPRCSEKAERESSDSVVTTRLLVPSSRIGCLIGKGGAIISEMRSVTRANI 372
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
R+ K+ P+ S DE+VQ+ G + +AL +T RL+ +F
Sbjct: 373 RILSKENLPKVASEDDEMVQITGELNVASNALLQVTLRLKANLF 416
>gi|413933963|gb|AFW68514.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 464
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 3 HSPAQDAVMRVHSRIA------EIGF-EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
H AQDA++++H +I E+ E V AR+LV Q+GCLLG+GG I+ ++R
Sbjct: 120 HCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQGNQVGCLLGKGGSIIQQLRS 179
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
TGA IRV + P+C DE+VQ+ G V+ AL+ I++RL
Sbjct: 180 DTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYEISTRL 224
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 58/98 (59%), Gaps = 2/98 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +H +++ RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 351 SPTIEALILLHDKVS--ASSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV 408
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ K P+ S DE+VQV G + AL I SRLR
Sbjct: 409 YSKADKPKYLSFGDELVQVAGPPAIARGALTEIASRLR 446
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 2 RHSPAQDAV-MRVHSRIAEIGF--EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
RHS + D R+ SR + EP + + R+L +++IG +LGRGG IV +R T
Sbjct: 15 RHSNSDDGKRKRLSSRHDDTSMSSEPIETIY-RILCPAKKIGSVLGRGGDIVKALREETK 73
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
A IRV D P DE V +I NY +
Sbjct: 74 AKIRVA--DSIP----GADERVIIIFNYQN 97
>gi|118485588|gb|ABK94645.1| unknown [Populus trichocarpa]
Length = 294
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +A +R+ R +E E +++ RLLV S +IGCLLG+GG I+ EMR+ T A
Sbjct: 89 YSPTIEAAVRLQPRCSE-KMERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTKA 147
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
IR+ K+ P+ S DE+VQ+ G+ +DAL I+ RLR +F R G + + L
Sbjct: 148 IIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVFD--REGAMS--AIL 203
Query: 120 PPFPEMP 126
P P +P
Sbjct: 204 PVLPYLP 210
>gi|224098894|ref|XP_002311309.1| predicted protein [Populus trichocarpa]
gi|222851129|gb|EEE88676.1| predicted protein [Populus trichocarpa]
Length = 447
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 73/140 (52%), Gaps = 12/140 (8%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R +E E G +V+ RLLV QIGCL+G+GG I+SEMR T A+
Sbjct: 307 QSPTMNAALRMQPRCSEKTEKESGDSVITTRLLVGRSQIGCLMGKGGAIISEMRNLTRAN 366
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ +D P+ DE+VQ+ G+ +AL + RL+ IF R G L
Sbjct: 367 IRIISEDNLPKVAGEDDEMVQITGSLEVASNALLQVILRLKANIFG--RDGA------LT 418
Query: 121 PFPEMPPPPFRPRHNPASPG 140
FP P P+ P S G
Sbjct: 419 TFP--PALPYIPVSLDTSDG 436
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 57/112 (50%), Gaps = 14/112 (12%)
Query: 5 PAQDAVMRVHSR-IAEI-------------GFEPGQAVVARLLVHSQQIGCLLGRGGHIV 50
PAQDA+ VH R IAE F Q V R+LV + QIGC++G+GG ++
Sbjct: 78 PAQDALFMVHDRVIAEDLNNAAAAEEEEEDRFGEVQQVTVRMLVPTDQIGCVIGKGGQVI 137
Query: 51 SEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+R T A IR+ + P DE++ + G V+ AL+ + +RL E
Sbjct: 138 QNIRSETRAQIRITKDEHLPPLALSTDELLLIHGEPSVVRKALYQVATRLHE 189
>gi|413953981|gb|AFW86630.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 667
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+AV+ + + I ++G + + RLLV S +I C GR G + S+++R T A++++
Sbjct: 403 PAQEAVLHIQTHIVDLGPDKDNIITTRLLVPSSEIACFDGREGSL-SDIQRQTSANVQIL 461
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF-PMKRP---GPNNGHSYLP 120
PK+ P C DE++Q++G + ++AL +T++LR ++ M P G N H +
Sbjct: 462 PKEDLPLCALESDELIQIVGEISAARNALIQVTTKLRSFLYREMSGPIQVGNINVHGAIS 521
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDH 164
P P P P S S + +HS D G S FD
Sbjct: 522 PVAGSPGGPNLGNDMPMSAYHQASQLATSWHSKDSGGSASGSFDQ 566
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E + G RL+V +GCLLG+GG
Sbjct: 151 SPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLGKGG 210
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P+DQ PRC S +E+VQV+G+ + V+ A+ IT RL+E++
Sbjct: 211 KIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGNCVKKAVAIITDRLKESL 268
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 1/109 (0%)
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENN 264
SW + GG FD S R + A ++T +T+EVVIP +A +
Sbjct: 550 SWHSKDSGGSASGSFDQGSNIIDEIRQGATKRFAVPLVTRSTLEVVIPNSAVASLTMRAG 609
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
S L+ I +ISGA V + + +P E VV +SGT +Q A++L+ FIL
Sbjct: 610 SKLAQISEISGATVTLAEDRPDILEKVVRISGTPEQASKAENLLQGFIL 658
>gi|413933966|gb|AFW68517.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 428
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 3 HSPAQDAVMRVHSRIA------EIGF-EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
H AQDA++++H +I E+ E V AR+LV Q+GCLLG+GG I+ ++R
Sbjct: 120 HCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQGNQVGCLLGKGGSIIQQLRS 179
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
TGA IRV + P+C DE+VQ+ G V+ AL+ I++RL
Sbjct: 180 DTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYEISTRL 224
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +H +++ RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 351 SPTIEALILLHDKVS--ASSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV 408
Query: 64 FPKDQAPRCGSPHDEIVQV 82
+ K P+ S DE+VQV
Sbjct: 409 YSKADKPKYLSFGDELVQV 427
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 2 RHSPAQDAV-MRVHSRIAEIGF--EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
RHS + D R+ SR + EP + + R+L +++IG +LGRGG IV +R T
Sbjct: 15 RHSNSDDGKRKRLSSRHDDTSMSSEPIETIY-RILCPAKKIGSVLGRGGDIVKALREETK 73
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
A IRV D P DE V +I NY +
Sbjct: 74 AKIRVA--DSIP----GADERVIIIFNYQN 97
>gi|413933965|gb|AFW68516.1| hypothetical protein ZEAMMB73_983755 [Zea mays]
Length = 537
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 63/105 (60%), Gaps = 7/105 (6%)
Query: 3 HSPAQDAVMRVHSRIA------EIGF-EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
H AQDA++++H +I E+ E V AR+LV Q+GCLLG+GG I+ ++R
Sbjct: 120 HCFAQDALLKIHDKIVADEIYDEVAHDESSDDVTARILVQGNQVGCLLGKGGSIIQQLRS 179
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
TGA IRV + P+C DE+VQ+ G V+ AL+ I++RL
Sbjct: 180 DTGAGIRVLSSENLPQCALQSDELVQISGAPSLVRKALYEISTRL 224
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +H +++ RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 351 SPTIEALILLHDKVS--ASSEKHHSSTRLVVPSNKVGCILGEGGQVITEMRRRTGAEIRV 408
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
+ K P+ S DE+VQ G H ++D
Sbjct: 409 YSKADKPKYLSFGDELVQAAGQIHGLED 436
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S+TIE+ IP + + G NL+ IRQISGA + +++ G++E VV + GT DQ +A
Sbjct: 448 SSTIELRIPNSSLESIVGVGGVNLAEIRQISGARLRLHEAHAGSSESVVEIQGTLDQAKA 507
Query: 304 AQSLIHAFI 312
AQSL+ FI
Sbjct: 508 AQSLLEGFI 516
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 10/90 (11%)
Query: 2 RHSPAQDAV-MRVHSRIAEIGF--EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
RHS + D R+ SR + EP + + R+L +++IG +LGRGG IV +R T
Sbjct: 15 RHSNSDDGKRKRLSSRHDDTSMSSEPIETIY-RILCPAKKIGSVLGRGGDIVKALREETK 73
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHS 88
A IRV D P DE V +I NY +
Sbjct: 74 AKIRV--ADSIPGA----DERVIIIFNYQN 97
>gi|255561850|ref|XP_002521934.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538859|gb|EEF40458.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 704
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-------------------VVARLLVHSQQIGCLLG 44
SPAQ+A+ +H RI E + G + V RL+V +GCLLG
Sbjct: 140 SPAQEALFLIHDRILESDGQFGMSYANEEDEYGGRGINNSNNRVATRLVVSRMHVGCLLG 199
Query: 45 RGGHIVSEMRRATGASIRVFPKDQA-PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P+D PRC S +EIVQV+G+ ++V++A+ I+SRLRE+
Sbjct: 200 KGGKIIEQMRIETKTQIRILPRDHTLPRCVSMSEEIVQVVGDVNAVKNAIAIISSRLRES 259
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 65/101 (64%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++ + + +L+V S +IGCL GR G + SEM R TGA I++
Sbjct: 405 PAQEALLHIQTHIIDLVPDSDNIIKTKLIVSSGEIGCLEGRDGSL-SEMERLTGAKIQIL 463
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
P+++ P C S DE+VQ+ G + +DAL +TSRLR ++
Sbjct: 464 PREKLPACVSEADELVQIEGEIKAARDALVEVTSRLRSYLY 504
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%)
Query: 273 ISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
+SGANV + + +P TE ++ +SGT +Q+ AQSL+ FIL
Sbjct: 595 LSGANVTLLEDRPEVTEKIIQISGTPEQVERAQSLLQGFIL 635
>gi|224141011|ref|XP_002323868.1| predicted protein [Populus trichocarpa]
gi|222866870|gb|EEF04001.1| predicted protein [Populus trichocarpa]
Length = 531
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+SP +A +R+ R +E E +++ RLLV S +IGCLLG+GG I+ EMR+ T A
Sbjct: 340 YSPTIEAAVRLQPRCSE-KMERDSGLISFTTRLLVPSSRIGCLLGKGGAIIDEMRKLTKA 398
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
IR+ K+ P+ S DE+VQ+ G+ +DAL I+ RLR +F R G + + L
Sbjct: 399 IIRIPRKENLPKVASDDDEMVQIAGDLDVAKDALIQISRRLRANVF--DREGAMS--AIL 454
Query: 120 PPFPEMP 126
P P +P
Sbjct: 455 PVLPYLP 461
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 60/103 (58%), Gaps = 6/103 (5%)
Query: 4 SPAQDAVMRVHSRI------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
SPAQDA+ RVH ++ E E V A+LLV S QIGC++G+GG IV +R T
Sbjct: 109 SPAQDALFRVHDKVIAEDLQVEDDSEGSPQVTAKLLVPSDQIGCIIGKGGQIVQNIRSET 168
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
GA IR+ + P C DE+VQ+ G ++ AL+ I SRL
Sbjct: 169 GAVIRILKDEHLPPCALSSDELVQISGEAAVLKKALYQIASRL 211
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 12/85 (14%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-------SPHDE 78
Q V R L +++IG ++GRGG I+ ++R T + IRV + P C SP DE
Sbjct: 40 QDTVYRYLCPARKIGSIIGRGGEIIKQLRIDTKSKIRV--GETVPGCEERVVTIYSPSDE 97
Query: 79 I--VQVIGNYHS-VQDALFHITSRL 100
+ GNY S QDALF + ++
Sbjct: 98 TNEYEDSGNYISPAQDALFRVHDKV 122
>gi|357112139|ref|XP_003557867.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 542
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGF-EPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ + +E E G+ + RLLV + QIGCL+G+GG I++E+RR + A+I
Sbjct: 339 SPTIDATVRLQPKCSEKTDPESGEPSYTTRLLVSTSQIGCLIGKGGSIITEIRRTSRANI 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K+ P+ S +E+VQ+ G+ + AL IT+RL+ F +R G +G + P
Sbjct: 399 RILSKENVPKVASEDEEMVQISGDLEVARHALVQITTRLKANFF--EREGALSGFQPVIP 456
Query: 122 FPEMP 126
+ MP
Sbjct: 457 YHPMP 461
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 67/105 (63%), Gaps = 7/105 (6%)
Query: 5 PAQDAVMRVHSR-IAEIG-----FEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH + IA+ G E G A V RLLV S QIGC++G+GGHI+ +R T
Sbjct: 108 PAQDALFRVHEKLIADDGPGDEENEEGLAQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDT 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G+ IRV ++ P CG DE++Q+ G+ V+ AL ++SRL +
Sbjct: 168 GSQIRVLSNERLPACGISGDELLQISGDPLVVRKALLQVSSRLHD 212
>gi|356496890|ref|XP_003517298.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 602
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 8/112 (7%)
Query: 3 HSPAQDAVMRVHSRIAE----IGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMR 54
+SPAQDAV+ V +RI E GF + V ARLLV + + C G G ++SE+R
Sbjct: 341 NSPAQDAVILVFARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNCFSGNEGQVISELR 400
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106
TGA I++ + P S D +VQ+ G Y VQ+AL+ ITSR+R+ + P
Sbjct: 401 EVTGADIQILHGESVPNGASDEDVVVQITGEYRCVQNALYKITSRIRDNLSP 452
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
GN A +T+TT+E+++ + VYGE+ NL IRQISGA V V DP G + G V++S
Sbjct: 520 GNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGAIVTVYDPSVGTSGGKVVIS 579
Query: 296 GTSDQMRAAQSLIHAFILCGVTS 318
GT DQ AAQSL+ AFI G S
Sbjct: 580 GTPDQTFAAQSLLQAFIQTGQAS 602
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 11/107 (10%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ--------AVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
S AQ+AV+RV R+ ++ E G V ++LL H+ QIG ++G+GG ++ +R
Sbjct: 111 SSAQEAVVRVFERVWDLEAEKGVNSNRAVNGEVFSKLLAHTSQIGAVVGKGGKNITAIRN 170
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
TGA IRVFP P+C + +E+VQ+ G +V+ AL ++ L++
Sbjct: 171 NTGAKIRVFP---PPQCATKDEELVQITGGILAVKKALISVSHCLQD 214
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
PGQ + RL+ H+ +G L+G G IVS++RR TG I S D ++ VI
Sbjct: 38 PGQ-IAFRLVCHASTVGGLIGSSGSIVSQLRRETGCKIHC-----EDSLSSAEDRVILVI 91
Query: 84 GNY 86
G+
Sbjct: 92 GSL 94
>gi|413953982|gb|AFW86631.1| hypothetical protein ZEAMMB73_253509 [Zea mays]
Length = 581
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 6/165 (3%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+AV+ + + I ++G + + RLLV S +I C GR G + S+++R T A++++
Sbjct: 403 PAQEAVLHIQTHIVDLGPDKDNIITTRLLVPSSEIACFDGREGSL-SDIQRQTSANVQIL 461
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF-PMKRP---GPNNGHSYLP 120
PK+ P C DE++Q++G + ++AL +T++LR ++ M P G N H +
Sbjct: 462 PKEDLPLCALESDELIQIVGEISAARNALIQVTTKLRSFLYREMSGPIQVGNINVHGAIS 521
Query: 121 PFPEMPPPPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDH 164
P P P P S S + +HS D G S FD
Sbjct: 522 PVAGSPGGPNLGNDMPMSAYHQASQLATSWHSKDSGGSASGSFDQ 566
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 67/118 (56%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E + G RL+V +GCLLG+GG
Sbjct: 151 SPAQEALLMVHRRILETDADDGDEDGEYGPRGKDSRDRGKTTTRLIVPKMHVGCLLGKGG 210
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P+DQ PRC S +E+VQV+G+ + V+ A+ IT RL+E++
Sbjct: 211 KIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQVVGDGNCVKKAVAIITDRLKESL 268
>gi|255562910|ref|XP_002522460.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223538345|gb|EEF39952.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 559
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 12/132 (9%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
S A +R+ R +E + G +V+ RLLV QIGCL+G+GG I+SEMR T AS
Sbjct: 355 QSATLTAALRLQPRCSEKTERDSGDSVITTRLLVPRSQIGCLMGKGGAIISEMRNVTRAS 414
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ +D P+ S DE+VQ+ G++ +AL H+ RL+ +F R G L
Sbjct: 415 IRILAEDNLPKVASEDDEMVQITGSHDVASNALLHVVLRLKANLFG--RDGA------LT 466
Query: 121 PFPEMPPPPFRP 132
FP P P+ P
Sbjct: 467 AFP--PALPYIP 476
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/118 (33%), Positives = 58/118 (49%), Gaps = 20/118 (16%)
Query: 5 PAQDAVMRVHSRI--------------------AEIGFEPGQAVVARLLVHSQQIGCLLG 44
PAQDA+ VH RI E G Q V R+LV + QIGC++G
Sbjct: 118 PAQDALFMVHDRIIAEDLNNSNNNNEEEDDEEEEEFGESKEQVVTVRMLVPADQIGCVIG 177
Query: 45 RGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+GG ++ +R TGA IR+ + P DE++ +IG V+ AL+ + +RL E
Sbjct: 178 KGGQVIQSIRSETGAQIRILKDEHLPPLALSSDELLLIIGEPAVVRKALYQVATRLHE 235
>gi|326512112|dbj|BAJ96037.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 541
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 84/156 (53%), Gaps = 8/156 (5%)
Query: 4 SPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E I E G+ + RLLV + +IGCL+G+GG I++E+RR + A+I
Sbjct: 339 SPTIDATVRLQPRCSEKIDAESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANI 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K P+ S +E+V + G+ + AL IT+RL+ F +R G +G + P
Sbjct: 399 RIISKQDVPKVASDDEEMVLISGDLDFARHALLQITTRLKANFF--EREGALSGFPPVIP 456
Query: 122 FPEMPP----PPFRPRHNPASPGSYPSPVGPFHSMD 153
+ +P + R N ++ YP G S D
Sbjct: 457 YHPLPASVSDEKYLSRDNKSAGHDYPYSSGYRASDD 492
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/103 (40%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 5 PAQDAVMRVHSRIAE----IGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH ++A + E ++ V RLLV S QIGC++G+GGHI+ +R T
Sbjct: 108 PAQDALFRVHEKLATDDGPVNKENEESLGQVTVRLLVPSDQIGCIIGKGGHIIQGIRSDT 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
G+ IRV + P C + DE++ + G+ V+ AL ++SRL
Sbjct: 168 GSQIRVLSNEHLPLCATSGDELLLITGDPMVVRKALLQVSSRL 210
>gi|186478468|ref|NP_001117282.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|5080792|gb|AAD39302.1|AC007576_25 Unknown protein [Arabidopsis thaliana]
gi|332190995|gb|AEE29116.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 479
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SPA +A +R+ R +E +G + A+ RLLV S QIGCL+G+GG ++SEMR T A+
Sbjct: 327 QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 386
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ +E+VQ+ G+ + AL + RLR F M ++G LP
Sbjct: 387 IRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM-----DHGLVLLP 441
Query: 121 P-FPEMP 126
FP +P
Sbjct: 442 TSFPYIP 448
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 5 PAQDAVMRVHSRIA-----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
PA DA+ +VH + + Q V R+LV S QIGC++G+GG ++ +
Sbjct: 112 PALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNL 171
Query: 54 RRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRL 100
R T A IRV KD P C HDE++ +IG V++AL+ + S L
Sbjct: 172 RNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 219
>gi|30683629|ref|NP_172869.2| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|30102666|gb|AAP21251.1| At1g14170 [Arabidopsis thaliana]
gi|110743444|dbj|BAE99608.1| hypothetical protein [Arabidopsis thaliana]
gi|332190993|gb|AEE29114.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 454
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SPA +A +R+ R +E +G + A+ RLLV S QIGCL+G+GG ++SEMR T A+
Sbjct: 302 QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 361
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ +E+VQ+ G+ + AL + RLR F M ++G LP
Sbjct: 362 IRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM-----DHGLVLLP 416
Query: 121 P-FPEMP 126
FP +P
Sbjct: 417 TSFPYIP 423
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 4 SPAQDAVMRVHSRIA-----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
PA DA+ +VH + + Q V R+LV S QIGC++G+GG ++
Sbjct: 86 CPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQN 145
Query: 53 MRRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRL 100
+R T A IRV KD P C HDE++ +IG V++AL+ + S L
Sbjct: 146 LRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 194
>gi|79317957|ref|NP_001031044.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|222424209|dbj|BAH20063.1| AT1G14170 [Arabidopsis thaliana]
gi|332190994|gb|AEE29115.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 446
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 8/127 (6%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SPA +A +R+ R +E +G + A+ RLLV S QIGCL+G+GG ++SEMR T A+
Sbjct: 294 QSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRAN 353
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
IR+ K+ P+ +E+VQ+ G+ + AL + RLR F M ++G LP
Sbjct: 354 IRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLRANSFDM-----DHGLVLLP 408
Query: 121 P-FPEMP 126
FP +P
Sbjct: 409 TSFPYIP 415
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 4 SPAQDAVMRVHSRIA-----------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSE 52
PA DA+ +VH + + Q V R+LV S QIGC++G+GG ++
Sbjct: 78 CPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQN 137
Query: 53 MRRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNYHSVQDALFHITSRL 100
+R T A IRV KD P C HDE++ +IG V++AL+ + S L
Sbjct: 138 LRNDTNAQIRVI-KDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 186
>gi|357124311|ref|XP_003563844.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 666
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 69/118 (58%), Gaps = 17/118 (14%)
Query: 4 SPAQDAVMRVHSRIAEI----GFEPGQ------------AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E G E G+ V RL+V +GCLLG+GG
Sbjct: 155 SPAQEALIMVHRRILETEPDDGDEDGEYGPRGKDARDRGKVTTRLVVPRLHVGCLLGKGG 214
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
I+ +MR T IR+ P+DQ PRC S +E+VQ++G + V+ A+ I+ RL+E++
Sbjct: 215 KIIEQMRSETKTHIRILPRDQNTPRCVSLSEEVVQIVGEGNCVKKAVAIISDRLKESL 272
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 64/101 (63%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + + I ++G + + RLLV S ++ C GR G + S+++R T A++++
Sbjct: 403 PAQEALLHIQTHIVDLGPDNDNIITTRLLVPSSEVACFEGRDGSL-SDIQRQTSANVQIL 461
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
P+++ P C DE++Q++G + + AL +T+++R I+
Sbjct: 462 PREELPSCALESDELIQIVGGIRAARSALMQVTTKIRSYIY 502
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 57/108 (52%)
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
SW + GG F+ S R ++T +T+EVVIP+ +A + S
Sbjct: 550 SWHSKDSGGSASGSFEQGSNINDDIRSTIKRFAVPLVTRSTLEVVIPKSAVASLSMRAGS 609
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
L+ I ++SGA+V + + +PG E VV +SGT +Q AQSL+ FIL
Sbjct: 610 KLAQISEMSGASVTLGEDRPGVMEKVVRISGTPEQADKAQSLLQGFIL 657
>gi|224077694|ref|XP_002305366.1| predicted protein [Populus trichocarpa]
gi|222848330|gb|EEE85877.1| predicted protein [Populus trichocarpa]
Length = 262
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 6/127 (4%)
Query: 2 RHSPAQDAVMRVHSRIAE-IGFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
++SP +A +R+ R +E + + G + RLLV S IGCLLG+GG I+ EMR+ T A
Sbjct: 89 QYSPTIEAALRLQPRCSEKMERDSGLFSFTTRLLVPSSHIGCLLGKGGLIIDEMRKLTKA 148
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
IR+ KD+ P+ DE+VQ+ G+ +DAL I+ RLR F R G + + L
Sbjct: 149 IIRIPRKDKLPKTALDDDEMVQISGDLDIAKDALIQISRRLRANAFD--REGLMS--AIL 204
Query: 120 PPFPEMP 126
P FP +P
Sbjct: 205 PVFPYLP 211
>gi|224131210|ref|XP_002328482.1| predicted protein [Populus trichocarpa]
gi|222838197|gb|EEE76562.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 137/330 (41%), Gaps = 71/330 (21%)
Query: 5 PAQDAVMRVHSRIAEIGFE---------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA D ++RVH RI + G E G V RLLV + Q G L+G+ G V ++
Sbjct: 14 PAMDGLLRVHKRIID-GLEGDSSHAPPSSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQE 72
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--------IFPM 107
A+ +RV + P D +V+V+G V A+ I S+LR+ +F M
Sbjct: 73 ASACIVRVLGAEDLPVFSLQDDRVVEVLGEAVGVHKAVELIASQLRKFLVDRSIIPLFEM 132
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYP-SPVGPFHSMDRGMGPSQPFDHQA 166
+ N PP +MP P + P S P +PVG GP
Sbjct: 133 QMQMAN------PPMEQMP-----PHQSWGGPQSLPLNPVG---------GP-------- 164
Query: 167 AFSHGMDP--MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASS 224
+G +P M PP + + P D PP P P +G A
Sbjct: 165 --GYGQNPQYMQPPR----------QHDNYYPPSDMPP-PMEKQPH-------QGISAYG 204
Query: 225 GFTPRNRPVESGNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 282
TP S AA ++T T ++ IP Y V G +++S+IR+ SGA V + +
Sbjct: 205 RQTPMGGHASSNAQAAPSMITQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQE 264
Query: 283 PKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ V +SGT+ Q++ AQ LI A
Sbjct: 265 TRGVPEAMTVEISGTASQVQTAQQLIQAIF 294
>gi|357112153|ref|XP_003557874.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 538
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 75/125 (60%), Gaps = 4/125 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGF-EPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
SP DA +R+ R +E E G+ + RLLV + +IGCL+G+GG I++E+RR + A+I
Sbjct: 339 SPTIDATVRLQPRCSEKTDPESGEPSYTTRLLVSTSRIGCLIGKGGSIITEIRRTSRANI 398
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
R+ K+ P+ S +E+VQ+ G+ + AL IT+RL+ F +R G +G + P
Sbjct: 399 RILSKENVPKVASEDEEMVQISGDLDVAKHALVQITTRLKANFF--EREGSLSGFQPVIP 456
Query: 122 FPEMP 126
+ +P
Sbjct: 457 YHPLP 461
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/153 (34%), Positives = 74/153 (48%), Gaps = 32/153 (20%)
Query: 5 PAQDAVMRVHSRIA-------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+ RVH ++ E E V+ RLLV S QIGC++G+GGHI+ +R T
Sbjct: 108 PAQDALFRVHEKLITDDGPGDEENEEGLAQVIVRLLVPSDQIGCIIGKGGHIIQGIRSDT 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
G+ IRV + P C DE++Q+ G+ V+ AL ++SRL +
Sbjct: 168 GSHIRVLSTEHLPACAISGDELLQISGDPLVVRKALLQVSSRLHDN-------------- 213
Query: 118 YLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFH 150
P R +H AS + P PVG H
Sbjct: 214 -----------PSRSQHLLASSLTQPYPVGSRH 235
>gi|357146815|ref|XP_003574121.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 777
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 62/107 (57%), Gaps = 10/107 (9%)
Query: 6 AQDAVMRVHSRIAE----------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
AQDA++++H +I+ E V AR+LV Q+GCLLG+GG I+ ++R
Sbjct: 127 AQDALLKIHDKISTHEDPHDGAIHEKSETAADVTARILVPGNQVGCLLGKGGSIIQQLRN 186
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
TGA IR+ P P+C DE+VQ+ G V+ AL+ I++RL +
Sbjct: 187 DTGAGIRILPSQDLPQCALQSDELVQISGAPSLVRKALYEISTRLHQ 233
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 108/212 (50%), Gaps = 30/212 (14%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPA +A++ +HS+++ + ++ RL+V S ++GC+LG GG +++EMRR GA IRV
Sbjct: 360 SPAIEALILLHSKVS--ASSEKRHLITRLVVPSSKVGCILGEGGKVITEMRRRIGAEIRV 417
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
+ K P+ S +E+VQV G +DAL I SRLR R G +G++ LP P
Sbjct: 418 YSKADKPKYLSFDEELVQVAGPPDIARDALTEIASRLRTRTL---RDG-GSGNNPLPLAP 473
Query: 124 E-------MPPPPFRPRHNPAS-PGSYPSPVGPFHSMDRGMGPSQPFDHQAAFS-HGM-- 172
P F PA+ P P+ P+ R + QP+ A+ S +GM
Sbjct: 474 SDGPRGDIFPSREFTQNGRPANPPYGRPANDSPY----RRLAIDQPYGRPASDSLYGMPA 529
Query: 173 -DPMV--PPNSDRIPFPYGSERPGHGPTFDRP 201
DP+ P N PYG RP + P + RP
Sbjct: 530 NDPIYGRPANDP----PYG--RPANDPPYGRP 555
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+S+++E++IP + V G NL+ IRQISGA + + + PG++E ++ + G DQ+R
Sbjct: 685 SSSSLELMIPNSSLGSVLGAGGVNLAEIRQISGARMKLLEGHPGSSESIMEIQGMPDQVR 744
Query: 303 AAQSLIHAFI 312
AAQSL+ FI
Sbjct: 745 AAQSLLQGFI 754
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V R+L ++IG +LGRGGHIV +R T A IRV
Sbjct: 46 TVYRILCPGKKIGSVLGRGGHIVKALREETKAKIRV 81
>gi|15237393|ref|NP_199431.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|9757739|dbj|BAB08264.1| unnamed protein product [Arabidopsis thaliana]
gi|14532588|gb|AAK64022.1| unknown protein [Arabidopsis thaliana]
gi|21280941|gb|AAM44907.1| unknown protein [Arabidopsis thaliana]
gi|332007968|gb|AED95351.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 644
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E V +LLV S+ IGC++G+ G I+SE+R+ T A I
Sbjct: 377 KSMAVEAVLLLQEKIND---EDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIH 433
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ + P+C P+DE+V++ G +V+DAL I RLR+ + + G N
Sbjct: 434 ISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRN 485
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 44/70 (62%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
STT+EV IP + V G NL +IR+ISGA + ++D K V ++SGTS+Q R
Sbjct: 573 STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKRT 632
Query: 304 AQSLIHAFIL 313
A++L AFI+
Sbjct: 633 AENLFQAFIM 642
>gi|388502730|gb|AFK39431.1| unknown [Lotus japonicus]
Length = 123
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
GN A +T+TT+E+V+ + + VYGE+ N+ IRQISGA+V V DP G ++G V++S
Sbjct: 41 GNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVIS 100
Query: 296 GTSDQMRAAQSLIHAFILCGVTS 318
GT DQ AAQSL+ AFI G S
Sbjct: 101 GTPDQTFAAQSLLQAFIQSGQVS 123
>gi|13605589|gb|AAK32788.1|AF361620_1 AT5g46190/MCL19_25 [Arabidopsis thaliana]
Length = 640
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 3/112 (2%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E V +LLV S+ IGC++G+ G I+SE+R+ T A I
Sbjct: 377 KSMAVEAVLLLQEKIND---EDEDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIH 433
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ + P+C P+DE+V++ G +V+DAL I RLR+ + + G N
Sbjct: 434 ISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRDDVLRDRETGSRN 485
>gi|297740744|emb|CBI30926.3| unnamed protein product [Vitis vinifera]
Length = 435
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + ++I + E V RLLV S+ IGC++G+ G I++E+R+ T A +R
Sbjct: 178 KSMAVEAVLLLQAKIND---EDDDTVAIRLLVPSKIIGCIIGKSGSIINEIRKRTRADVR 234
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ K + P+C +DE+++V+G SV+DAL I RLR+ + G N
Sbjct: 235 I-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDDALKDRDTGHNT 285
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T +T ++VIP + V G+ +N+++IR+ISGA + ++D K + V ++SGT +Q R
Sbjct: 363 TPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKR 422
Query: 303 AAQSLIHAFILC 314
A++LI AFI+
Sbjct: 423 TAENLIQAFIMA 434
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
N PV SG A+ I V+ P + V G S++ +R+ SGA+V V+D K E
Sbjct: 104 NLPVVSGYGASRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDE 163
Query: 290 GVVMVSGTSDQMRAAQSLIHAFIL 313
++ V+ T + A +L
Sbjct: 164 CLITVTSTESVDDLKSMAVEAVLL 187
>gi|224123476|ref|XP_002319087.1| predicted protein [Populus trichocarpa]
gi|222857463|gb|EEE95010.1| predicted protein [Populus trichocarpa]
Length = 392
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 94/330 (28%), Positives = 139/330 (42%), Gaps = 71/330 (21%)
Query: 5 PAQDAVMRVHSRIAEIGFEP---------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA D ++RVH RI + G + G V RLLV + Q G L+G+ G V ++
Sbjct: 58 PAMDGLLRVHKRIID-GLDSDSSNTPPTSGAKVSTRLLVPASQAGSLIGKQGGTVKSIQE 116
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI--------FPM 107
A+ +RV + P D +V+V+G V A+ I S LR+ + F M
Sbjct: 117 ASTCIVRVLGAEDLPVFALQDDRVVEVLGEAAGVHKAVELIASHLRKFLVDRSIIPLFEM 176
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA 167
+ N P +MPP H P P P+ P H G GP
Sbjct: 177 QMQMSN------PSMEQMPP------HQSWGP---PQPLPPNH----GGGPG-------- 209
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGV---GGGDPRGFDASS 224
+G +P P ++ Y P D PP QG+ G P G ASS
Sbjct: 210 --YGQNPQYMPPPRQLDNYY--------PPADMPPLMEKQPHQGISAYGREAPMGSHASS 259
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
+ +++T T ++ IP Y V G +++S+IR+ SGA V + + +
Sbjct: 260 ---------NAQAAPSMITQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQETR 310
Query: 285 --PGATEGVVMVSGTSDQMRAAQSLIHAFI 312
PGA V +SGT+ Q++ AQ LI F+
Sbjct: 311 GVPGAM--TVEISGTASQVQTAQQLIQNFM 338
>gi|255554418|ref|XP_002518248.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223542595|gb|EEF44134.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 451
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 87/321 (27%), Positives = 141/321 (43%), Gaps = 59/321 (18%)
Query: 4 SPAQDAVMRVHSRIAEI----GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DAV+RV R++ + E G A +A RLLV S Q L+G+ G I+ ++
Sbjct: 121 SPAMDAVIRVFKRVSGLPEGNAQELGAAGIAFSSIRLLVASTQAINLIGKQGSIIKSIQE 180
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+TGAS+RV +++ P + + IV + G V +AL I LR+ +
Sbjct: 181 STGASVRVLSENEVPFYVATDERIVDLQGEAMKVLEALEAIVGHLRKFLV---------D 231
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAF---SHG- 171
HS LP F + +Y + + S+DR ++ + +++F S G
Sbjct: 232 HSVLPLFEK----------------NYNALI----SLDR---QAETWSDRSSFHTTSQGR 268
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR 231
+D P + R E P P S S + G DP S R
Sbjct: 269 IDIDYPLSGKRDALLLERETPFESQV---PLSRIS-----LYGQDPAISSVRSSVFNR-- 318
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
+ I+T T + +P Y + G +N+ +IR+ SGA + VN+ + E +
Sbjct: 319 -----SSVPIVTQVTQTMQVPISYAEEIIGIRGNNIEYIRRTSGAIITVNESRGLPDEII 373
Query: 292 VMVSGTSDQMRAAQSLIHAFI 312
V + GT+ +++ AQ LI F+
Sbjct: 374 VEIKGTASEVQMAQQLIQEFL 394
>gi|297792661|ref|XP_002864215.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
gi|297310050|gb|EFH40474.1| hypothetical protein ARALYDRAFT_495374 [Arabidopsis lyrata subsp.
lyrata]
Length = 652
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 68/120 (56%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAE----IGFEPGQ---------------AVVARLLVHSQQIGCLLG 44
SPAQ+A+ VH RI E G+ Q VV RL+V +GCLLG
Sbjct: 134 SPAQEALFNVHDRILESEPQFGYGGAQPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLG 193
Query: 45 RGGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P++ PRC S +EIVQ++G +V++AL ++SRLRE+
Sbjct: 194 KGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELSAVKNALLIVSSRLRES 253
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 63/101 (62%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + ++I ++ + + RLLV S+ CL G+ G VSE+ R TG S+++
Sbjct: 386 PAQEALLHIQTQIIDLLPDKDNLITTRLLVSSRDSVCLEGKAGS-VSEISRLTGTSVQIL 444
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+++ PRC S +D ++Q+ G+ + +DAL +T LR +F
Sbjct: 445 AREEIPRCASINDVVIQITGDIRAARDALVELTLLLRSHMF 485
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 232 PVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
PV + A ++T +T+EVV+P+ + + ++ + L+ I + SGA+V + + +P T+
Sbjct: 563 PVTTSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTLVEDRPEETQN 622
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
++ +SGT +Q AQSL+ FIL
Sbjct: 623 IIRISGTPEQAERAQSLLQGFIL 645
>gi|225443912|ref|XP_002278367.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
Length = 623
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + ++I + E V RLLV S+ IGC++G+ G I++E+R+ T A +R
Sbjct: 366 KSMAVEAVLLLQAKIND---EDDDTVAIRLLVPSKIIGCIIGKSGSIINEIRKRTRADVR 422
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ K + P+C +DE+++V+G SV+DAL I RLR+ + G N
Sbjct: 423 I-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDDALKDRDTGHNT 473
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T +T ++VIP + V G+ +N+++IR+ISGA + ++D K + V ++SGT +Q R
Sbjct: 551 TPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKR 610
Query: 303 AAQSLIHAFIL 313
A++LI AFI+
Sbjct: 611 TAENLIQAFIM 621
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 5 PAQDAVMRVHSRI--AEIGFEPG-----QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+++VH+ I A E ++LV S Q ++G+ G + +R T
Sbjct: 110 PAQDALLKVHAAIVNAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKT 169
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
A+I++ KD C D V + G+ +V+ ALF I++ M + P
Sbjct: 170 RANIKITAKDSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISA-------IMYKFTPRE 222
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASP--GSYPS 144
PE PP P P P G YPS
Sbjct: 223 EIPLDTTVPEAPPSIIIPSDVPIYPAGGFYPS 254
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
N PV SG A+ I V+ P + V G S++ +R+ SGA+V V+D K E
Sbjct: 292 NLPVVSGYGASRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDE 351
Query: 290 GVVMVSGTSDQMRAAQSLIHAFIL 313
++ V+ T + A +L
Sbjct: 352 CLITVTSTESVDDLKSMAVEAVLL 375
>gi|147818880|emb|CAN73780.1| hypothetical protein VITISV_042181 [Vitis vinifera]
Length = 637
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 4/112 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + ++I + E V RLLV S+ IGC++G+ G I++E+R+ T A +R
Sbjct: 366 KSMAVEAVLLLQAKIND---EDDDTVAIRLLVPSKIIGCIIGKSGSIINEIRKRTRADVR 422
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ K + P+C +DE+++V+G SV+DAL I RLR+ + G N
Sbjct: 423 I-SKSERPKCADANDELIEVVGEVGSVRDALVQIVLRLRDDALKDRDTGHNT 473
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 48/71 (67%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T +T ++VIP + V G+ +N+++IR+ISGA + ++D K + V ++SGT +Q R
Sbjct: 565 TPSTFDMVIPANAVGKVMGKGGANIANIRKISGAVIEISDSKSSRGDRVALISGTPEQKR 624
Query: 303 AAQSLIHAFIL 313
A++LI AFI+
Sbjct: 625 TAENLIQAFIM 635
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 65/152 (42%), Gaps = 19/152 (12%)
Query: 5 PAQDAVMRVHSRI--AEIGFEPG-----QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+++VH+ I A E ++LV S Q ++G+ G + +R T
Sbjct: 110 PAQDALLKVHAAIVNAVASLENSDKKKKDKEECQILVPSSQSANVIGKAGATIKRLRSKT 169
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
A+I++ KD C D V + G+ +V+ ALF I++ M + P
Sbjct: 170 RANIKITAKDSTDPSHSCAMEFDNFVLIAGDSEAVKKALFAISA-------IMYKFTPRE 222
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASP--GSYPS 144
PE PP P P P G YPS
Sbjct: 223 EIPLDTTVPEAPPSIIIPSDVPIYPAGGFYPS 254
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
N PV SG A+ I V+ P + V G S++ +R+ SGA+V V+D K E
Sbjct: 292 NLPVVSGYGASRSEELIIRVLCPFDKIGRVIGRGGSSIKSVREASGAHVEVDDTKADRDE 351
Query: 290 GVVMVSGTSDQMRAAQSLIHAFIL 313
++ V+ T + A +L
Sbjct: 352 CLITVTSTESVDDLKSMAVEAVLL 375
>gi|225445949|ref|XP_002264417.1| PREDICTED: KH domain-containing protein At4g18375 isoform 1 [Vitis
vinifera]
Length = 466
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 130/326 (39%), Gaps = 71/326 (21%)
Query: 4 SPAQDAVMRVHSRIAEI------GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEM 53
SPA DAV+RV R+ + G G A VA RLLV S Q L+G+ G ++ +
Sbjct: 138 SPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAINLIGKQGSLIKSI 197
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+ +TGAS+RV D+ P + + IV++ G VQ AL + LR+ +
Sbjct: 198 QESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLRKFLVD------- 250
Query: 114 NGHSYLPPFPEMPPPPF---RPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQA 166
HS LP F R A G+ + +G +S+ S D +
Sbjct: 251 --HSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLP-AKRESLYLDRET 307
Query: 167 AFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGF 226
H PM YG E HG + R SSG
Sbjct: 308 QMEHSGLPM-----------YGQE---HGLSGIR----------------------SSGL 331
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
P I+T + IP Y + G +N+++IR+ SGA + V + +
Sbjct: 332 GRAGAP--------IVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGL 383
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
E V + GTS Q++ AQ LI FI
Sbjct: 384 PDEITVEIKGTSSQVQTAQQLIQEFI 409
>gi|224112243|ref|XP_002316129.1| predicted protein [Populus trichocarpa]
gi|222865169|gb|EEF02300.1| predicted protein [Populus trichocarpa]
Length = 553
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/165 (36%), Positives = 83/165 (50%), Gaps = 25/165 (15%)
Query: 3 HSPAQDAVMRVHSRIAE-IGFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
SP +A +R+ R ++ E G +V+ RLLV QIGCL+G+GG I+SEMR T A+
Sbjct: 337 QSPTMNAALRLQPRCSDKTEKESGDSVITTRLLVGRSQIGCLMGKGGAIISEMRNQTRAN 396
Query: 61 IRVFPKDQAPRCGSPHDEIVQV-IGNYHSVQ---------DALFHITSRLRETIFPMKRP 110
IR+ +D P+ DE+VQV + N++SVQ +AL + RL+ +F R
Sbjct: 397 IRIISEDNLPKVAVEDDEMVQVNVYNFNSVQITGSLEVASNALLQVILRLKANLFG--RD 454
Query: 111 GPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRG 155
G L FP P P+ P S G S G S RG
Sbjct: 455 GA------LTAFP--PALPYIPMSLDTSDG---SKYGSRDSQSRG 488
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 5 PAQDAVMRVHSR-IAEI-------------GFEPGQAVVARLLVHSQQIGCLLGRGGHIV 50
PAQDA+ VH R IAE F Q V R+LV + QIGC++G+GG ++
Sbjct: 110 PAQDALFMVHDRVIAEDLNNAAAEEEEGEDNFGEVQQVTVRMLVPADQIGCVIGKGGQVI 169
Query: 51 SEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+R T A IR+ D P DE++ + G +V+ AL+ + +RL E
Sbjct: 170 QNIRSETCAQIRITKDDHLPPLALSIDELLLIHGEPSAVRKALYQVATRLHEN 222
>gi|297735477|emb|CBI17917.3| unnamed protein product [Vitis vinifera]
Length = 364
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 90/326 (27%), Positives = 130/326 (39%), Gaps = 71/326 (21%)
Query: 4 SPAQDAVMRVHSRIAEI------GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEM 53
SPA DAV+RV R+ + G G A VA RLLV S Q L+G+ G ++ +
Sbjct: 36 SPAMDAVIRVFKRVTGLSESEGDGKAYGAAGVAFCSIRLLVASTQAINLIGKQGSLIKSI 95
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+ +TGAS+RV D+ P + + IV++ G VQ AL + LR+ +
Sbjct: 96 QESTGASVRVLSGDEVPFYAAADERIVELQGEALKVQKALEAVVGHLRKFLVD------- 148
Query: 114 NGHSYLPPFPEMPPPPF---RPRHNPASP----GSYPSPVGPFHSMDRGMGPSQPFDHQA 166
HS LP F R A G+ + +G +S+ S D +
Sbjct: 149 --HSVLPLFERTYNATISQDRQSDTWADKSLLHGTSQTGMGSDYSLP-AKRESLYLDRET 205
Query: 167 AFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGF 226
H PM YG E HG + R SSG
Sbjct: 206 QMEHSGLPM-----------YGQE---HGLSGIR----------------------SSGL 229
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
P I+T + IP Y + G +N+++IR+ SGA + V + +
Sbjct: 230 GRAGAP--------IVTQIAQTMQIPLSYAEDIIGIGGANIAYIRRTSGAILTVQESRGL 281
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
E V + GTS Q++ AQ LI FI
Sbjct: 282 PDEITVEIKGTSSQVQTAQQLIQEFI 307
>gi|376338927|gb|AFB33992.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338929|gb|AFB33993.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338931|gb|AFB33994.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
gi|376338933|gb|AFB33995.1| hypothetical protein CL1760Contig1_01, partial [Larix decidua]
Length = 86
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/77 (48%), Positives = 53/77 (68%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ +LL+ S Q GCLLG+GG I+SEMR+ T A+IR+ PK+ P C DE+VQ++G+
Sbjct: 3 ITTKLLIPSNQTGCLLGKGGAIISEMRKQTRANIRILPKEDLPPCALDSDEMVQIVGDIR 62
Query: 88 SVQDALFHITSRLRETI 104
+ + AL +TSRLR I
Sbjct: 63 AARAALVQVTSRLRSFI 79
>gi|147817258|emb|CAN62067.1| hypothetical protein VITISV_030085 [Vitis vinifera]
Length = 288
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 57/90 (63%), Gaps = 10/90 (11%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ----------AVVARLLVHSQQIGCLLGRGGHIVSEM 53
SPAQ A++RV RI ++ E + AV RLL S Q+GC+LGRGG IV ++
Sbjct: 193 SPAQQALVRVFERILKVDEEREEKEKKEDLGNVAVCCRLLAPSNQVGCVLGRGGKIVEKI 252
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
R+ +GA IRV PKD P C SP DE++QV+
Sbjct: 253 RQESGAQIRVLPKDHIPACASPGDELIQVV 282
>gi|224115590|ref|XP_002332094.1| predicted protein [Populus trichocarpa]
gi|222874914|gb|EEF12045.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 130/326 (39%), Gaps = 60/326 (18%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA----------------VVARLLVHSQQIGCLLGRGG 47
SPA DAV+RV R++ G PG+ RLLV S Q L+G+ G
Sbjct: 113 SPAMDAVLRVFKRVS--GLSPGEGDNTGSAAAAAAAGSAFCSIRLLVASSQAINLIGKQG 170
Query: 48 HIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107
I+ ++ TG +RV +D P + + IV++ G V AL + LR+ +
Sbjct: 171 SIIKSIQENTGVVVRVMAEDDIPTYATSDERIVEIHGEAMKVFKALEAVIGHLRKFLVD- 229
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQA- 166
HS +P F + +Y + + D +QP H A
Sbjct: 230 --------HSVIPIFEK----------------TYNATISLERPADACADNAQPSLHSAP 265
Query: 167 AFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGF 226
AFS G+ + R P Y E H P + G+ G G ++
Sbjct: 266 AFSSGIISDYSLSLKRDPSIY--EHETHFEHKISQPGFSLYGDPGLVGLRSTGLGRAT-- 321
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
A I+T T + +P Y + G SN+++IR+ SGA + + + +
Sbjct: 322 ------------APIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTSGAILSIQESRGL 369
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
E V + GTS Q++ AQ LI FI
Sbjct: 370 PDEITVEIKGTSSQVQMAQQLIQEFI 395
>gi|326530414|dbj|BAJ97633.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 580
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 70/110 (63%), Gaps = 8/110 (7%)
Query: 4 SPAQDAVMRVHSRI-AEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMRR 55
SP +A++ +HS++ A EP ++ +V RL+V S+++GC+LG GG +++EMRR
Sbjct: 128 SPTIEALILLHSKVSASKVSEPSESEPSGEHKLVTRLVVPSKKVGCILGEGGKVITEMRR 187
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
GA IRV+ K P+ S ++E+VQV G+ ++AL I SRLR+ I
Sbjct: 188 RIGAEIRVYSKADKPKYLSFNEELVQVSGSPDIAREALTEIASRLRDRIL 237
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 46/70 (65%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+S+++E+ IP + V G NL+ IRQISGA + + + +PG++E ++ + G + Q+R
Sbjct: 490 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 549
Query: 303 AAQSLIHAFI 312
AQSL+ FI
Sbjct: 550 VAQSLLQGFI 559
>gi|356529691|ref|XP_003533422.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 611
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 54/83 (65%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
GN A +T+TT+E+++ + VYGE+ NL IRQISGA V V DP G + G V++S
Sbjct: 529 GNMFATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISGATVTVYDPSVGTSGGKVVIS 588
Query: 296 GTSDQMRAAQSLIHAFILCGVTS 318
GT DQ AAQSL+ AFI G S
Sbjct: 589 GTPDQTLAAQSLLQAFIQTGEVS 611
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 8/112 (7%)
Query: 3 HSPAQDAVMRVHSRIAE----IGFEPGQA----VVARLLVHSQQIGCLLGRGGHIVSEMR 54
+SPAQDAV+ V +RI E GF + V ARLLV + + G G ++ E+R
Sbjct: 350 NSPAQDAVILVFARIIEDHIGKGFLQVSSMESPVTARLLVATSTVNSWSGNEGQVILELR 409
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106
TGA I++ + P S D +VQ+ G Y VQ+AL+ ITSR+R+ + P
Sbjct: 410 EVTGADIQILHGESVPNGASDDDVVVQITGEYRCVQNALYKITSRIRDNLSP 461
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 11/107 (10%)
Query: 4 SPAQDAVMRVHSRI----AEIGFEPGQAV----VARLLVHSQQIGCLLGRGGHIVSEMRR 55
S AQ+A++RV R+ AE G +AV ++LL H+ QIG ++G+GG ++ +R
Sbjct: 120 SSAQEAIVRVFERVWGLEAEKGVNSNRAVNSEVFSKLLAHTSQIGAVVGKGGKNITAIRN 179
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+TGA IRV P P+C + +E+V + G +V+ AL ++ L++
Sbjct: 180 STGAKIRVCP---PPQCATKDEELVLITGGILAVKKALISVSHCLQD 223
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
PGQ + RL+ H+ +G L+G G IVS++RR T I S D ++ VI
Sbjct: 47 PGQ-IAFRLVCHASIVGGLIGSSGSIVSQLRRETACKIHC-----EDSLSSAEDRVILVI 100
Query: 84 GNY 86
G+
Sbjct: 101 GSV 103
>gi|384253488|gb|EIE26963.1| hypothetical protein COCSUDRAFT_59455 [Coccomyxa subellipsoidea
C-169]
Length = 648
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query: 6 AQDAVMRVHSRIAEI-GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
AQ+A+ V SR++E + V R+LV Q+GC+LG+GG ++S++RR TGA+IRV
Sbjct: 93 AQEALFAVQSRLSEADAAQEDTCCVVRMLVEQAQVGCVLGKGGEVISDLRRRTGANIRVS 152
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
K P C D +V V G +V DAL +++ LR
Sbjct: 153 DKRDLPACAGSEDSLVAVKGEAQAVSDALRQLSALLR 189
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 69/304 (22%), Positives = 118/304 (38%), Gaps = 76/304 (25%)
Query: 38 QIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHD-------EIVQVIGNYHSVQ 90
Q+G +LG+GG ++++R+ +GA +R+ P + P D ++VQ+ G +
Sbjct: 381 QVGGVLGKGGATITQVRKDSGAGVRLVPLEAEDDRWLPRDVAAGQMHKVVQIEGPITATV 440
Query: 91 DALFHITSRLR------ETIFPMKRPGPNNGHSYLPP---------FPEMPPPPFRPRHN 135
A+ + ++LR + P + G ++ P P P R R
Sbjct: 441 KAVRAVCAQLRAWQARSQGAQPARELTEAYGGAHAPQQFHPMHQAMLPRETAPGLRGRGL 500
Query: 136 P----ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSER 191
P A G Y SP+ H + P D Q MD
Sbjct: 501 PDLSRAEMGMYDSPL--RHCERPVLQLRHPLDLQVLSRGQMDR----------------- 541
Query: 192 PGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVI 251
+P + T Q V D + + E+ +
Sbjct: 542 -----AMSQPLMMQQVTQQVVTAPD--------------------------QTQSCELRL 570
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
+ + V G+ N++ IR+ISGA V ++D G TE ++ +SGT +Q++AA +L+ AF
Sbjct: 571 VGVQVGCVLGKAGENITQIRKISGARVKLSDAPRGVTERLLRLSGTCEQVQAAVNLVQAF 630
Query: 312 ILCG 315
+L G
Sbjct: 631 LLAG 634
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 11/84 (13%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI- 83
G V RLL + +IG ++G+GG ++ +MR +TGA I+V P+ + ++ +
Sbjct: 28 GAMVEYRLLCPATRIGTVIGKGGSVIQQMRDSTGARIKVEPE-----VAGCSERLISLSS 82
Query: 84 -----GNYHSVQDALFHITSRLRE 102
Q+ALF + SRL E
Sbjct: 83 SDEPGAELCRAQEALFAVQSRLSE 106
>gi|8809595|dbj|BAA97146.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 660
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPG-------------------QAVVARLLVHSQQIGCLLG 44
SPAQ+A+ VH RI E + G VV RL+V +GCLLG
Sbjct: 133 SPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLG 192
Query: 45 RGGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P++ PRC S +EIVQ++G ++V++AL ++SRLRE+
Sbjct: 193 KGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRES 252
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + ++I ++ + + RLLV S+ CL G+ G VSE+ R TG S+++
Sbjct: 386 PAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGS-VSEISRLTGTSVQIL 444
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+++ PRC S +D ++Q+ G + ++AL +T LR +F
Sbjct: 445 AREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 232 PVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
PV + A ++T +T+EVV+P+ + + ++ + L+ I + SGA+V + + +P T+
Sbjct: 563 PVTTSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQN 622
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
++ +SGT +Q AQSL+ FIL
Sbjct: 623 IIRISGTPEQAERAQSLLQGFIL 645
>gi|30696273|ref|NP_200118.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|17065220|gb|AAL32764.1| RNA-binding protein-like [Arabidopsis thaliana]
gi|30725478|gb|AAP37761.1| At5g53060 [Arabidopsis thaliana]
gi|332008915|gb|AED96298.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 652
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 20/120 (16%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPG-------------------QAVVARLLVHSQQIGCLLG 44
SPAQ+A+ VH RI E + G VV RL+V +GCLLG
Sbjct: 133 SPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLG 192
Query: 45 RGGHIVSEMRRATGASIRVFPKD-QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+GG I+ +MR T IR+ P++ PRC S +EIVQ++G ++V++AL ++SRLRE+
Sbjct: 193 KGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRES 252
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 62/101 (61%), Gaps = 1/101 (0%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
PAQ+A++ + ++I ++ + + RLLV S+ CL G+ G VSE+ R TG S+++
Sbjct: 386 PAQEALLHIQTQIIDLIPDKDNLITTRLLVPSRDSICLEGKAGS-VSEISRLTGTSVQIL 444
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+++ PRC S +D ++Q+ G + ++AL +T LR +F
Sbjct: 445 AREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF 485
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query: 232 PVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
PV + A ++T +T+EVV+P+ + + ++ + L+ I + SGA+V + + +P T+
Sbjct: 563 PVTTSRMAVPLVTRSTLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQN 622
Query: 291 VVMVSGTSDQMRAAQSLIHAFIL 313
++ +SGT +Q AQSL+ FIL
Sbjct: 623 IIRISGTPEQAERAQSLLQGFIL 645
>gi|255583245|ref|XP_002532387.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223527911|gb|EEF29999.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 688
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 62/109 (56%), Gaps = 10/109 (9%)
Query: 3 HSPAQDAVMRVHSRIAE--------IGFEPGQAVVARLLVHSQQIGCLLGRGG--HIVSE 52
HSPAQ+A + V +R E G G V ARLLV S + CL+ +GG +I SE
Sbjct: 344 HSPAQNAAILVFARSVEHDIEKGHPSGLIEGATVTARLLVASDAVCCLIEKGGTGNIDSE 403
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
M +GA IR+ +Q C S D ++++ G Y +VQ+ALF +T +LR
Sbjct: 404 MIEVSGADIRILDGEQIMACASEDDVVIEITGEYKNVQNALFMVTGKLR 452
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
I+ +T IE+V+P+ + VYGE+ SNL+ +RQISGA V V +P G + +V++SGT DQ
Sbjct: 613 IVVNTIIELVVPEDTIGSVYGEDGSNLARLRQISGAKVEVREPSSGKSGRIVVISGTPDQ 672
Query: 301 MRAAQSLIHAFIL 313
AAQSL+ AFIL
Sbjct: 673 TNAAQSLLQAFIL 685
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 64/146 (43%), Gaps = 39/146 (26%)
Query: 4 SPAQDAVMRVHSRIAEI-----------------GFEPGQAVVARLLVHSQQIGCLLGRG 46
S AQ+AV+RV R+ E+ G G LL + QIG ++G+G
Sbjct: 106 SVAQEAVIRVCERMWEVDGQRERRGGVDNNSNNSGLGEG---YCGLLADTTQIGAVVGKG 162
Query: 47 GHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106
G V MRR +GA IR P P C S D+++Q+ G+ +V+ AL +T L +
Sbjct: 163 GKNVLRMRRESGADIRFLPP---PHCASKDDQLIQITGSILAVKKALVAVTDCLHDC--- 216
Query: 107 MKRPGPNNGHSYLPPFPEMPPPPFRP 132
PP+ + P RP
Sbjct: 217 -------------PPYEKDPTLLMRP 229
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 22 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQ 81
+PGQ V R++ H+ IG L+GR G +S++RR TG ++ + Q GS H ++
Sbjct: 20 LQPGQ-VAFRVVCHASIIGGLIGRSGSAISQIRRDTGCTVHCDEQVQ----GSDH-RVIT 73
Query: 82 VIG 84
++G
Sbjct: 74 IVG 76
>gi|255557235|ref|XP_002519648.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223541065|gb|EEF42621.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 462
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +A++ + +I + E V RLLV + IGC++G+ G I++E+RR T A IR
Sbjct: 204 KSMAVEAILLLQGKIND---EDDDTVSIRLLVPCKVIGCIIGKSGSIINEIRRRTKADIR 260
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 108
+ K Q P+C DE+V+V+G SV+DAL I RLR+ K
Sbjct: 261 I-SKGQKPKCADSSDELVEVLGEVGSVRDALVQIVLRLRDDALKEK 305
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T+E+++P + V G+ +N+++IR+ISGA + ++D K + + +SGT +Q RAA
Sbjct: 392 STLEMLVPANAVGKVLGKGGANIANIRKISGAMIEISDAKSARGDRIAHISGTPEQKRAA 451
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 452 ENLIQAFIM 460
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 6 AQDAVMRVHSRIA-------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA++RVHS I+ + + R+LV S Q ++G+ G + ++R T
Sbjct: 113 AQDALLRVHSAISNAVSSVLDSDRKMKDKEECRILVPSSQSANIIGKAGTTIKKLRSKTR 172
Query: 59 ASIRVFPKD 67
A+I+V PKD
Sbjct: 173 ATIKVTPKD 181
>gi|255574127|ref|XP_002527979.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223532605|gb|EEF34391.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 416
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 83/323 (25%), Positives = 135/323 (41%), Gaps = 52/323 (16%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-----VVA-------RLLVHSQQIGCLLGRGGHIVS 51
SPA DAV+RV R++ G G+A VA +LLV S Q L+G+ G +
Sbjct: 87 SPAMDAVLRVFKRVS--GLSAGEADAMGSAVAGAAFSSVKLLVASSQAINLIGKQGSTIK 144
Query: 52 EMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG 111
++ +T A++RV +++AP + + IV++ G V AL + +LR+ +
Sbjct: 145 SIQESTAATVRVLAEEEAPSYATSDERIVEIHGEASKVLKALEGVIGQLRKFLVD----- 199
Query: 112 PNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGP-FHSMDRGMGPSQPFDHQAAFSH 170
H+ +P F + + + P P ++ P + + S
Sbjct: 200 ----HTVVPIFEKTHNAIISQDRSADARADKTQPSIPSLTALHSAPAPQVGIGSEYSLSL 255
Query: 171 GMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
DP + +DR PQ G G D+S G
Sbjct: 256 KRDPSI---------------------YDRESHLDQKIPQ--SGLLLFGQDSSLGGL--- 289
Query: 231 RPVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
RP G AA I+T T + +P Y + G SN+++IR+ SGA + + + + E
Sbjct: 290 RPTGLGRAAAPIVTQMTQTMQVPLSYAEDIIGVGGSNIAYIRRTSGAILTIQESRT-PDE 348
Query: 290 GVVMVSGTSDQMRAAQSLIHAFI 312
V + GT+ Q++ AQ LI FI
Sbjct: 349 ITVEIKGTASQVQMAQQLIQEFI 371
>gi|224121400|ref|XP_002330818.1| predicted protein [Populus trichocarpa]
gi|222872620|gb|EEF09751.1| predicted protein [Populus trichocarpa]
Length = 405
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 136/333 (40%), Gaps = 71/333 (21%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQA--------------VVARLLVHSQQIGCLLGRGGH 48
SPA DAVMRV R++ G PG+ RLLV S Q L+G+ G
Sbjct: 70 QSPAMDAVMRVFKRVS--GLSPGEGDNTGSAAAAAGSAFCSIRLLVASSQAINLIGKQGS 127
Query: 49 IVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE-----T 103
I+ ++ TGA++ V +D+ P + + IV++ G V AL + +LR+ +
Sbjct: 128 IIKSIQENTGAAVHVMAEDELPSYATSDERIVEIHGEAMKVFKALEAVIGQLRKFLVDHS 187
Query: 104 IFPMKRPGPNNGHSYLPPF---PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQ 160
+ P+ N S P P++ P + P + PS + +S+ PS
Sbjct: 188 VIPIFEKTYNATISQECPADARPDIAQPSLHSAYVP----TIPSGIASDYSLSFKRDPS- 242
Query: 161 PFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF 220
++H+ F H + +PG + G DP
Sbjct: 243 IYEHETQFEHKIS-----------------QPG----------------LSIYGQDP--- 266
Query: 221 DASSGFTPRNRPVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVV 279
GF R G AA I+T T + +P Y + G SN+++IR+ S A +
Sbjct: 267 -GIVGF----RSTGLGRAAAPIVTQVTQTMQVPLSYAEDIIGVAGSNIAYIRRTSRAILS 321
Query: 280 VNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + + E V + GT Q++ AQ LI FI
Sbjct: 322 IQESRGLPDEITVEIKGTGAQVQMAQQLIQEFI 354
>gi|30681758|ref|NP_850026.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|330252232|gb|AEC07326.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 632
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 85/324 (26%), Positives = 129/324 (39%), Gaps = 42/324 (12%)
Query: 2 RHSPAQDAVMRVHSRIAEI--------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ+A+ V +R EI G G V +LLV S G G E
Sbjct: 335 RYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---EA 391
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
ATGA + + +Q S ++ ++++ G Y VQ AL H++S+LRE + P K G
Sbjct: 392 IIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEM 451
Query: 114 NGHS---YLPPFPEMPPPPFRPRHNPASPGS--YPSPVGPFHSMDRGMGPSQPFDHQAAF 168
Y +P AS G S P M R G +
Sbjct: 452 RARVSNPYESAGGRSQIYNLQPSQQDASRGDSLSVSAAVPDLKMVRS-GAEVLKSNSVMH 510
Query: 169 SHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTP 228
+ + + N +P E G Q GD S P
Sbjct: 511 TEVLKEVDELNDFTLPQSLLEEDLTQGMK----------QLQMSSNGDV------SSLPP 554
Query: 229 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 288
R++ V + T+E+ + + + +YG + + + +++QISGANV V DP T
Sbjct: 555 RSKGVS-------VRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVDVKDPT--GT 605
Query: 289 EGVVMVSGTSDQMRAAQSLIHAFI 312
E V++SG +Q R A SLI + +
Sbjct: 606 EATVLISGNPEQARTAMSLIESIL 629
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 4 SPAQDAVMRVHSR-IAEIGFEPGQAVV--------ARLLVHSQQIGCLLGRGGHIVSEMR 54
S AQ A++RV R + + G VV +L QIG +LG GG V MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
R +GA IRV P P CG+ +DE++Q+ G+ +V+ AL ++S ++
Sbjct: 167 RNSGAMIRVLP---PPICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210
>gi|297821485|ref|XP_002878625.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297324464|gb|EFH54884.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 633
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/330 (26%), Positives = 136/330 (41%), Gaps = 53/330 (16%)
Query: 2 RHSPAQDAVMRVHSRIAEI--------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ+A+ V +R EI G G V +LLV SQ L+G G E
Sbjct: 335 RYSHAQNALALVFARSVEIDVEKGLRPGLHNGAVVKTKLLVPSQFANSLVGNGNR---EA 391
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
ATGA + + +Q S ++ ++++ G Y VQ AL H++S+LRE + P K G
Sbjct: 392 IIATGADVHIPVDNQILEWISENEVVIEIKGEYGHVQKALTHVSSKLRENLLPKKVLG-- 449
Query: 114 NGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
EM P + + Y +S RG S D + F
Sbjct: 450 ----------EMRARVSNPYESAGTSQIYNLKQSQQNS-SRGDSLSVS-DGEQNF----- 492
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWT-PQGVGGGD----------PRGFDA 222
MV ++ + H + +T PQ + D R D
Sbjct: 493 KMVRSGAEVMKL----NSVMHTEVLKEVDELKGFTLPQSLLEDDLTQEMKQLQMSRNGDV 548
Query: 223 SSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 282
SS P+ R + T+E+ + + + +YG + + + ++RQISGA V V D
Sbjct: 549 SS--LPQRR-----GKGVYVRKITLELTVEKDALGSLYGRDGTGVDNLRQISGAGVDVKD 601
Query: 283 PKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
P G V+++SG +Q R A SLI + +
Sbjct: 602 P-TGIEATVLIISGNPEQTRTAMSLIESIL 630
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 70/155 (45%), Gaps = 28/155 (18%)
Query: 4 SPAQDAVMRVHSR-IAEIGFEPGQAVV--------ARLLVHSQQIGCLLGRGGHIVSEMR 54
S AQ A++RV R + + G VV +L QIG +LG GG V MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
R++GA IRV P P CG+ DE++Q+ G+ +V+ AL +++ +++
Sbjct: 167 RSSGAMIRVLP---PPICGTNTDELIQITGDVLAVKKALVMVSTCIQDN----------- 212
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPF 149
PP P P + ++ G+ P F
Sbjct: 213 -----PPVNGYPQPLCIKAYESSTDGNSEDPHSEF 242
>gi|363808250|ref|NP_001242748.1| uncharacterized protein LOC100819415 [Glycine max]
gi|255637181|gb|ACU18921.1| unknown [Glycine max]
Length = 318
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 138/321 (42%), Gaps = 40/321 (12%)
Query: 5 PAQDAVMRVHSRIAEIGFEP-------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PA D ++RVH ++ + P G+ VV RLLV Q G L+G+ G + + AT
Sbjct: 14 PAVDVLLRVHKQVVNVDPHPADSASGAGRPVVTRLLVADTQAGSLIGKQGSTIKSFQDAT 73
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
G +IR+ + P D +V++ G V A+ + LR+ F + R S
Sbjct: 74 GCNIRILGSEHLPVFALRDDSVVEIQGESSGVHKAVELVAIHLRK--FLVDR-------S 124
Query: 118 YLPPFP-EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMV 176
+ F +M P R N P GP H + GP Q F A G
Sbjct: 125 IVVVFETQMQRPDVRVNQN--------VPPGPPH---QPWGPPQGFQ---APGPGSGGGP 170
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGF-TPRNRPVES 235
+ P + P D PP + QG R DAS G + +P +S
Sbjct: 171 VFPPNPQYMPPSHNYDNYYPPADLPPMDKHLH-QGPAPAYVR--DASMGIHSSSAQPQQS 227
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
++T T + IP Y V G + +N+S+IR+ SGA++ + + + E V +S
Sbjct: 228 -----VVTKVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVPGEMTVEIS 282
Query: 296 GTSDQMRAAQSLIHAFILCGV 316
GT+ Q++AAQ L+ F G+
Sbjct: 283 GTASQIQAAQQLVQVFHFKGL 303
>gi|257831439|gb|ACV71020.1| UPA21 [Capsicum annuum]
Length = 433
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 86/320 (26%), Positives = 133/320 (41%), Gaps = 65/320 (20%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ---------AVVARLLVHSQQIGCLLGRGGHIVSEMR 54
SPA DAV RV R+A G E G +LL+ S Q L+GR G + E++
Sbjct: 114 SPAMDAVFRVFKRVA--GLEGGDPGAAAAGFAFCSFKLLMASSQAVHLIGRHGSTIKEIQ 171
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+GAS+RV +D + + IV++ G V DA + +LR+ +
Sbjct: 172 ERSGASLRVLSEDDVVPYATADERIVEIRGEGLKVLDAFEAVVRQLRKFLVD-------- 223
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPG-SYPSPVGPFHSMDRGMG-PSQPFDHQAAFSHGM 172
HS +P F E RP + A S S G M + D +AA M
Sbjct: 224 -HSMIPIF-EKTCSQDRPLESWAEKSQSLNSEAGAVSDYSFSMNRDTYLLDCEAA----M 277
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
D +P ++ + YG + PGHG G S+G R P
Sbjct: 278 DSKLPRSTLSL---YGQD-PGHG-----------------------GIRTSAG---RIGP 307
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
V +T T + +P LY + G +N+++IR+ S A + V + + E +
Sbjct: 308 V--------VTQMTKVMQVPLLYAEDIIGIGGTNIAYIRRTSKAVLTVQESRGLPEEITI 359
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+ G+S +++ A+ LI FI
Sbjct: 360 EIKGSSSEVQTAEQLIQEFI 379
>gi|449433573|ref|XP_004134572.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 625
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A + V+ + +I + + G V+ RLL+ S+ IGC++G+ G I++E+R++T A IR
Sbjct: 367 KSMAVETVLLLQEKIND---DEGGTVIMRLLIPSKVIGCIIGKSGSIINEIRKSTRADIR 423
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+ D+ +C S DE+V+V G V+DAL I RLR+ + G N+
Sbjct: 424 ISKGDKL-KCASSSDELVEVTGKVGCVRDALVQIVLRLRDDALKERDVGHNSA 475
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+++E++IP V G+ +N+++IR+ISGA + ++D K + + ++SGTS+Q R A
Sbjct: 555 SSLEMLIPANAAGKVIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQKRTA 614
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 615 ENLIQAFIM 623
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 114/311 (36%), Gaps = 83/311 (26%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQ-------AVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA+++VH+ IA G ++L+ S Q ++G+ G + ++R T
Sbjct: 110 AQDALLKVHAAIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTR 169
Query: 59 ASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
SI++ PKD C D + G V+ ALF I+S + + FP + P +
Sbjct: 170 TSIKISPKDATDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYK--FPPREEIPLDT 227
Query: 116 HSYLPPFPEMPPPPFRPRHNP--ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
+ E PP P P ++ G YPS D
Sbjct: 228 N-----VNEAPPNIIIPSDVPLYSAGGLYPSA---------------------------D 255
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW---------TPQGVGGGDPRGFDASS 224
P++PP S IP G++ D P S +W P G+ G P
Sbjct: 256 PILPPRS--IPPMLGAQHVQD--LHDYPESGNAWPLYSSSLPVVPGGISGHPPS------ 305
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
+ V+ P + V G+ + IRQ SGA V V+D K
Sbjct: 306 ------------------EELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTK 347
Query: 285 PGATEGVVMVS 295
E ++ +S
Sbjct: 348 RDCDECIITIS 358
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 10/86 (11%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + +V R+L IG ++G+GG + +R+A+GA + V D C DE + I
Sbjct: 304 PSEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEV--DDTKRDC----DECIITI 357
Query: 84 GNYHSVQDALFHITSRLRETIFPMKR 109
++ S+ D + S ET+ ++
Sbjct: 358 SSFESLDD----LKSMAVETVLLLQE 379
>gi|356573119|ref|XP_003554712.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Glycine max]
Length = 446
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 136/331 (41%), Gaps = 72/331 (21%)
Query: 5 PAQDAVMRVHSRIAEIGFEP---------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA D ++RVH RI + G E V +LLV + Q G L+G+ G V ++
Sbjct: 108 PAVDGLLRVHKRIID-GLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQE 166
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--------IFPM 107
A+ +RV + P D +V+V+G+ V AL I S LR+ IF M
Sbjct: 167 ASNCIVRVLGAEDLPIFALQDDRVVEVVGDPTGVHKALELIASHLRKFLVDRGVIPIFEM 226
Query: 108 KRPGPNNGHS-YLPPF-----PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQP 161
N H+ ++PP P+ PP P Y P P Q
Sbjct: 227 NMQTANTHHAEHMPPHQSWGPPQGLPPNVGGGSGFGPPSQYMPP------------PRQ- 273
Query: 162 FDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFD 221
+D PP +E P P DR P QG+ G D
Sbjct: 274 ----------LDSYYPP----------AEMP---PPVDRQPH------QGISA---YGRD 301
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
AS G + + + +I+T T ++ IP Y V G +++S+IR+ SGA V +
Sbjct: 302 ASIGVHASSN---TQSAPSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQ 358
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + E V +SGT+ Q++ AQ LI F+
Sbjct: 359 EARGVPGEMTVEISGTASQVQTAQQLIQNFM 389
>gi|297833144|ref|XP_002884454.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
gi|297330294|gb|EFH60713.1| hypothetical protein ARALYDRAFT_477721 [Arabidopsis lyrata subsp.
lyrata]
Length = 568
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 94/316 (29%), Positives = 136/316 (43%), Gaps = 46/316 (14%)
Query: 5 PAQDAVMRVHSRIAE-IGFEPGQA-----VVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
P+ D ++RVH RI + + EP QA V RLLV + Q G L+G+ G V ++ A+
Sbjct: 239 PSMDGLLRVHMRIVDGLDGEPSQAPPASKVSTRLLVPASQAGSLIGKQGGTVKAIQEASA 298
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSY 118
+RV + P D +V+V+G SV AL I S LR+ F + R S
Sbjct: 299 CIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHKALELIASHLRK--FLVDR-------SI 349
Query: 119 LPPFP-EMPPPPFRPRHNPASPGSYPSPVGPFHSM-DRGMGPSQPFDHQAAFSHGMDPMV 176
+P F +M P + H PA ++ P G S+ G G + P Q H D
Sbjct: 350 IPFFENQMQKPTRQMDHMPAPHQAWGPPQGHAPSVGGGGYGHNPPPYMQPPPRH--DSYY 407
Query: 177 PPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG 236
PP P +PP + P +G A P N V S
Sbjct: 408 PP-----------------PEMRQPPMEKQ--PH-------QGISAYGREPPMNVHVSSA 441
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
+ T ++ IP Y V G + SN+S+ R++SGA V + + + E V VSG
Sbjct: 442 P-PMVAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSG 500
Query: 297 TSDQMRAAQSLIHAFI 312
T Q++ A LI F+
Sbjct: 501 TGSQVQTAMQLIQNFM 516
>gi|297806983|ref|XP_002871375.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
gi|297317212|gb|EFH47634.1| hypothetical protein ARALYDRAFT_325507 [Arabidopsis lyrata subsp.
lyrata]
Length = 525
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 69/110 (62%), Gaps = 6/110 (5%)
Query: 2 RHSPAQDAVMRVHSRIAE------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
++SP+Q A++ V S++ E + ++ ARL+V S QI CL+G GHI S +++
Sbjct: 333 KNSPSQRALVLVFSKMYENTTAKVLDSGLTSSITARLVVRSNQINCLMGEEGHIKSTIQQ 392
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
TGA I V +Q P+C S +++IVQ+ G + +V++A+ +TS LRE +
Sbjct: 393 RTGAFITVLNVEQNPKCVSENNQIVQISGAFPNVKEAINQVTSMLREDLI 442
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S AQ A++RV + + F V +RLL+ + + ++G+GG ++ +R+ TG ++ +
Sbjct: 108 SRAQGALIRVFEAL-NVRFGTSSTVSSRLLMEACHVVTVIGKGGELMEMIRKETGCNVEI 166
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR--ETIFPMKRPG-PNNGHSYLP 120
+ P C P D +V++ GN +V+ L I+SRL+ ++IF K G P+N + +
Sbjct: 167 CQYN-LPSCADPDDVMVKIEGNVFAVKKVLVSISSRLQACQSIFKKKMVGNPHNMQTNVV 225
Query: 121 P 121
P
Sbjct: 226 P 226
>gi|449525363|ref|XP_004169687.1| PREDICTED: KH domain-containing protein At4g18375-like, partial
[Cucumis sativus]
Length = 531
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 66/113 (58%), Gaps = 4/113 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A + V+ + +I + + G V+ RLL+ S+ IGC++G+ G I++E+R++T A IR
Sbjct: 367 KSMAVETVLLLQEKIND---DEGGTVIMRLLIPSKVIGCIIGKSGSIINEIRKSTRADIR 423
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+ D+ +C S DE+V+V G V+DAL I RLR+ + G N+
Sbjct: 424 ISKGDKL-KCASSSDELVEVTGKVGCVRDALVQIVLRLRDDALKERDVGHNSA 475
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 115/311 (36%), Gaps = 83/311 (26%)
Query: 6 AQDAVMRVHSRI-------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA+++VH+ I ++ + ++L+ S Q ++G+ G + ++R T
Sbjct: 110 AQDALLKVHAAIANALASAGDLDRKQRDKEQCQILIPSSQSANVIGKAGSTIKKLRSKTR 169
Query: 59 ASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
SI++ PKD C D + G V+ ALF I+S + + FP + P +
Sbjct: 170 TSIKISPKDATDPIHSCAMDFDNFAVIAGEPEGVRRALFAISSIMYK--FPPREEIPLDT 227
Query: 116 HSYLPPFPEMPPPPFRPRHNP--ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMD 173
+ E PP P P ++ G YPS D
Sbjct: 228 N-----VNEAPPNIIIPSDVPLYSAGGLYPSA---------------------------D 255
Query: 174 PMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW---------TPQGVGGGDPRGFDASS 224
P++PP S IP G++ D P S +W P G+ G P
Sbjct: 256 PILPPRS--IPPMLGAQHVQD--LHDYPESGNAWPLYSSSLPVVPGGISGHPPS------ 305
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
+ V+ P + V G+ + IRQ SGA V V+D K
Sbjct: 306 ------------------EELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEVDDTK 347
Query: 285 PGATEGVVMVS 295
E ++ +S
Sbjct: 348 RDCDECIITIS 358
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + +V R+L IG ++G+GG + +R+A+GA + V D C DE + I
Sbjct: 304 PSEELVVRVLCPFDNIGRVIGKGGGTIKSIRQASGARVEV--DDTKRDC----DECIITI 357
Query: 84 GNYHSVQDALFHITSRLRETIFPMK 108
++ S+ D + S ET+ ++
Sbjct: 358 SSFESLDD----LKSMAVETVLLLQ 378
>gi|356505941|ref|XP_003521747.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 94/321 (29%), Positives = 137/321 (42%), Gaps = 52/321 (16%)
Query: 5 PAQDAVMRVHSRIAEIGFEP---------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA D ++R+H RI + G E V +LLV + Q G L+G+ G V ++
Sbjct: 105 PAVDGLLRIHKRIID-GLESDFTHAPSGVAGKVSTKLLVPASQAGSLIGKQGGTVKSIQE 163
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
A+ +RV + P D +V+V+G+ V AL I S LR+ F + R
Sbjct: 164 ASNCIVRVLGAEDLPIFALQDDRVVEVVGDPAGVHKALELIASHLRK--FLVDR------ 215
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP- 174
+P F EM P H P P S GPSQ G P
Sbjct: 216 -GVIPIF-EMNMQTANPHHAEHMP--------PHQS----WGPSQGLPPNVGGGPGFGPP 261
Query: 175 ---MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNR 231
M PP +P +E P P DR P QG+ G DAS G +
Sbjct: 262 SQYMPPPRQLDSYYP-SAEMP---PPVDRQPH------QGISA---YGRDASIGVHASSN 308
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
+ + +I+T T ++ IP Y V G +++S+IR+ SGA V + + + E
Sbjct: 309 ---TQSAPSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGATVTIQEARGVPGEMT 365
Query: 292 VMVSGTSDQMRAAQSLIHAFI 312
V +SGT+ Q++ AQ LI F+
Sbjct: 366 VEISGTASQVQTAQQLIQNFM 386
>gi|388500506|gb|AFK38319.1| unknown [Lotus japonicus]
Length = 437
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 41/111 (36%), Positives = 66/111 (59%), Gaps = 4/111 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I++ E V +LLV S+ IGC++G+ G I++E+R+ T A IR
Sbjct: 179 KSMAVEAVLLIQGKISD---EDDTEVSIQLLVPSKVIGCIIGKSGSIINEIRKRTRADIR 235
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+ D+ P+C +DE+V+V G V+DAL I RLR+ + + G N
Sbjct: 236 ISKGDK-PKCADVNDELVEVGGAIDCVRDALIQIILRLRDDVLRERDTGHN 285
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T++++IP + V G+ +N+++IR+ISGA + ++D + + + ++SGT ++ RAA
Sbjct: 368 STLDILIPANAVGKVLGKGGANIANIRKISGATIEISDARARG-DRIALISGTPEEKRAA 426
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 427 ENLIQAFIM 435
>gi|255561873|ref|XP_002521945.1| Poly(rC)-binding protein, putative [Ricinus communis]
gi|223538749|gb|EEF40349.1| Poly(rC)-binding protein, putative [Ricinus communis]
Length = 548
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 134/322 (41%), Gaps = 55/322 (17%)
Query: 5 PAQDAVMRVHSRIAEIGFE---------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA D ++RVH RI + G + G V RLLV + Q G L+G+ G V ++
Sbjct: 213 PAMDGLLRVHKRIVD-GLDGDSSHASSGTGTKVSTRLLVPASQAGSLIGKQGGTVKSIQE 271
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
A+ +RV + P D +V+V+G+ V A+ I S LR+ F + R
Sbjct: 272 ASSCVVRVLGAEDLPVFALQDDRVVEVLGDAAGVHKAVELIASHLRK--FLVDR------ 323
Query: 116 HSYLPPFP---EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
S +P F +M PP P P + P + G GP
Sbjct: 324 -SIIPLFEMHMQMQNPPHMEHMPPHQSWGPPQGIPP----NAGGGPGYG----------- 367
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
+P P +I Y P D PP P P +G A P
Sbjct: 368 NPQYMPPPRQIENYY--------PPADLPP-PMEKQPH-------QGISAYGREAPMGVH 411
Query: 233 VESGNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
S + AA ++T T ++ IP Y V G +++S+IR+ SGA V + + + E
Sbjct: 412 GSSNSQAAPSMITQITQQMQIPLSYADAVIGTAGTSISYIRRASGATVTIQETRGVPGEM 471
Query: 291 VVMVSGTSDQMRAAQSLIHAFI 312
V +SGT+ Q++ AQ LI F+
Sbjct: 472 TVEISGTASQVQTAQQLIQNFM 493
>gi|224076902|ref|XP_002305041.1| predicted protein [Populus trichocarpa]
gi|222848005|gb|EEE85552.1| predicted protein [Populus trichocarpa]
Length = 623
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 73/143 (51%), Gaps = 7/143 (4%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +A++ + +I + E V R LV S+ IGC++G+ G IV+E+R+ T A +
Sbjct: 365 KSMAVEAILLLQGKIND---EDNDIVGIRFLVPSKVIGCIIGKSGAIVNEIRKRTNADVC 421
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG---HSYL 119
+ D+ +C +DE+V+V G SV+DAL I RLR+ + K G N+ S
Sbjct: 422 ISKVDKL-KCADSNDELVEVAGEVGSVRDALVQIVLRLRDDVLKEKDGGLNSSVGTDSVY 480
Query: 120 PPFPEMPPPPFRPRHNPASPGSY 142
P + P P P +P Y
Sbjct: 481 PVHAGISIPSILPSVPPVAPMGY 503
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 47/69 (68%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T+E+++P + V G+ +N+++IR+ISGA + ++D K + + +SG +Q +AA
Sbjct: 553 STLEMLVPANAVGKVIGKGGANIANIRKISGAMIEISDAKSARGDRIAYISGKPEQKQAA 612
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 613 ENLIQAFIM 621
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/319 (21%), Positives = 115/319 (36%), Gaps = 63/319 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PAQDA+++VH+ I+ G + ++LV + Q ++G+ G + ++R T
Sbjct: 109 PAQDALLKVHAAISNAVAALGDSDKRCRDKKECQILVPTSQSANIIGKAGATIKKLRSKT 168
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
A+I++ KD + C D + + G +V+ ALF +++ M + P
Sbjct: 169 RANIKITAKDASDPTHSCAMDFDNFLLITGESEAVKKALFAVSA-------IMYKFSPKE 221
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
PE PP + P F DP
Sbjct: 222 EIPLETTVPEAPPSII-------------------------ISSDVPIYQPGGFYPNADP 256
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+V S +P G+ H P F G GD R +S PV
Sbjct: 257 IVSSRS--VPPILGAT---HIPEFQ-------------GYGDMR---SSWPIYSSTVPVV 295
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
+ I ++ P + V G+ S + IRQ+SGA + V+D K E ++ V
Sbjct: 296 PSFGNTSRSELIIRLLCPFDKIGRVIGKGGSTIKSIRQVSGARIEVDDTKADRDECIITV 355
Query: 295 SGTSDQMRAAQSLIHAFIL 313
T + A +L
Sbjct: 356 IATESPDDLKSMAVEAILL 374
>gi|148907101|gb|ABR16694.1| unknown [Picea sitchensis]
Length = 490
Score = 77.4 bits (189), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 135/317 (42%), Gaps = 48/317 (15%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56
SPA D +++VH RI E E G+ + RLL+ Q G L+G+ G + ++
Sbjct: 110 SPAMDGILKVHKRIIEGIDEVGRTQQAAGGPTITRLLLAGIQSGSLIGKQGATIKSIQEN 169
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
+G + +V + P C D+++++ G +V AL + S LR+ F + R
Sbjct: 170 SGVAAKVVGSEDIPYCALADDKVLEIQGEPANVHKALELVVSHLRK--FLVDR------- 220
Query: 117 SYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSM-DRGMGPSQPFDHQAAFSHGMDPM 175
S LP + EM + P S+ + G G F + + ++ P
Sbjct: 221 SVLPMY-EMNMSKTNQSQMEQNLSHQPWSHNQTSSLPNSGSG----FGNNSKYT----PT 271
Query: 176 VPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVES 235
PP+ + + P+ D PP S + G DP G + P
Sbjct: 272 APPHDNY-----------YAPS-DLPPETHSHHGLNMYGRDPLGGHSVPNAAP------- 312
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
A ++T + + IP Y V G N +N+S+ R+ SGA + + + + E V +
Sbjct: 313 ---APVITQVSQRMQIPLSYADAVIGTNGANISYCRRNSGAIITIEETRGVPGEMTVEIH 369
Query: 296 GTSDQMRAAQSLIHAFI 312
GT+ Q++ AQ LI F+
Sbjct: 370 GTASQVQTAQQLIQNFM 386
>gi|148909250|gb|ABR17725.1| unknown [Picea sitchensis]
Length = 435
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/155 (33%), Positives = 82/155 (52%), Gaps = 21/155 (13%)
Query: 5 PAQDAVMRVHSRIAEIG------FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
PAQD ++RVHS I + + + ARLLV + QIG L+G+GG+ + ++R +G
Sbjct: 116 PAQDGLLRVHSVIVQESSGKDNDADKKRPQDARLLVANSQIGSLIGKGGNNIQKLRSESG 175
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKRPGPN 113
A I++ KD+ P C DE+V + G+ +V+ AL+ +++ L +E I P P
Sbjct: 176 AQIQIPRKDELPGCAFSFDELVVISGDAAAVKKALYAVSAFLFKHPPKEQI-PWSVILPE 234
Query: 114 NGHSYLPP--FPEMPPPPFRPR-------HNPASP 139
S LPP P PP + P+ HN ++P
Sbjct: 235 TNQSSLPPSGVPTFPPANYLPQGDSLFGHHNLSAP 269
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 2 RHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
R SP +AV+ + + + + G A+ R LV S+ IGCLLG+GG+I+SEMR
Sbjct: 374 RVSPTIEAVLLLQGKTSGTTDKDG-AISTRFLVPSKHIGCLLGKGGNIISEMR 425
>gi|356562072|ref|XP_003549298.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 130/326 (39%), Gaps = 69/326 (21%)
Query: 4 SPAQDAVMRVHSRIA---EIGFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRA 56
SPA +AV+RV R++ EI E + VA RLLV S Q L+G+ G ++ ++
Sbjct: 106 SPAMNAVIRVFKRVSGFSEIDAENKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQEN 165
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
TGAS+RV D+ P + + IV++ G V AL + LR+ + +
Sbjct: 166 TGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLV---------DN 216
Query: 117 SYLPPFPEMPPPPFRPRHNPASPG-SYPSPVGPFHSMDR-GMGPSQPFDHQ-----AAFS 169
S LP F + H + PS HS + + P + A
Sbjct: 217 SVLPLFEKTYNATISQEHQADTTWVDKPS----LHSASQPSIVTDLPLSTKRDSLFADRE 272
Query: 170 HGMDPMVPPNSDRIPFPYGSERPGHG---PTFDRPPSPRSWTPQGVGGGDPRGFDASSGF 226
+D ++PP++ I YG + G RP +P
Sbjct: 273 SQLDSLLPPSTMSI---YGQDSSLSGLRSSALSRPSAP---------------------- 307
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
I+T+ + IP Y + G +N+ +IR SGA + V + P
Sbjct: 308 -------------PIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRCTSGAILTVQE-SPV 353
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
E +V + GTS Q++ AQ LI I
Sbjct: 354 PDEIIVEIKGTSSQVQTAQQLIQEVI 379
>gi|168018585|ref|XP_001761826.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686881|gb|EDQ73267.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 355
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 135/329 (41%), Gaps = 77/329 (23%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQA----------VVARLLVHSQQIGCLLGRGGHIVSEM 53
SPA + ++RVH R+ E G EP A V +RLLV + Q G L+GR G + +
Sbjct: 70 SPAMEGLLRVHRRVIE-GAEPESADAEIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSI 128
Query: 54 RRATGASIRVFP-KDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--------I 104
+ ++GA++RV P ++ P C D +V+V G +VQ A + + LR+ +
Sbjct: 129 QDSSGATVRVLPAAEELPLCALADDRVVEVTGEPRNVQRATELVVAHLRKFLVDRSVLPL 188
Query: 105 FPMKRPGPN--NGHSYLPPFPEMPPPPFRPRHNPASPGS--YPSPVGPFHSMDRGMGPSQ 160
F + R N N S + + + N +S S Y + P HS P Q
Sbjct: 189 FELNRAVANQSNQQSTASQWQQPSSTQQQQPPNYSSNDSSYYGAAELPHHSQ-----PQQ 243
Query: 161 PFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF 220
A HG+ YG + P G T PP+P
Sbjct: 244 QSHDLANHHHGLS------------LYGRD-PTLGGTI-VPPTP---------------- 273
Query: 221 DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 280
A ++T T + IP Y + G +N+S++R+ SGA + +
Sbjct: 274 ------------------APVITQVTQHMQIPLSYADAIIGGAGANISYMRRTSGATITI 315
Query: 281 NDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ + E V + G++ Q++ AQ LI
Sbjct: 316 QETRSVPGEMTVEIHGSASQVQTAQQLIQ 344
>gi|297735516|emb|CBI17956.3| unnamed protein product [Vitis vinifera]
Length = 433
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/328 (25%), Positives = 136/328 (41%), Gaps = 59/328 (17%)
Query: 4 SPAQDAVMRVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+PA D ++RVH I ++ + G V RLLV + Q G L+G+ G + ++ A+
Sbjct: 100 APAIDGLLRVHKCIMDVESDVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQEASNC 159
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE--------TIFPMKRPG 111
+RV ++ P +D +V++ G SV A+ I S LR+ +F M+
Sbjct: 160 IVRVLGEN-LPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDRSVIKVFEMEMQK 218
Query: 112 PNN-GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSH 170
PN G+ +PP P P + PG P+ + QP +
Sbjct: 219 PNTQGNENMPPQQSWDPSQVFPINTGGEPGFVPN-----------LQYMQP-------PY 260
Query: 171 GMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
+D PP + P GP + R T GV +S TP+
Sbjct: 261 QLDNYYPPPAQT---PLDQHHHHQGPPYGRE------TGAGV---------SSPSLTPQQ 302
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
+I+ T + +P Y V G + N+S++R+ SGA + + + K E
Sbjct: 303 ---------SIVNKITQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKGVPGEM 353
Query: 291 VVMVSGTSDQMRAAQSLIHAFILCGVTS 318
V ++G+ Q++ AQ LI F+ +S
Sbjct: 354 TVEINGSVSQVQTAQQLIQNFMAEAASS 381
>gi|357447239|ref|XP_003593895.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|357447243|ref|XP_003593897.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482943|gb|AES64146.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
gi|355482945|gb|AES64148.1| Heterogeneous nuclear ribonucleoprotein K [Medicago truncatula]
Length = 631
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/106 (37%), Positives = 62/106 (58%), Gaps = 4/106 (3%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + +I + E V RLLV S+ IGC++GR G I++E+R+ T A I+
Sbjct: 371 KSVAVEAVLLLQEKIND---EDDAPVSIRLLVPSKVIGCIIGRSGAIINEIRKRTKADIQ 427
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 108
+ + P+ +DE+V+V+G V+DAL I RLRE + K
Sbjct: 428 I-SRSNKPKYADDNDELVEVVGEVDCVRDALIQIVLRLREDVLKNK 472
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 50/69 (72%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T+E+V+P + V G+ +NL++IR+ISGA V +++ K + V ++SGTS++ RAA
Sbjct: 561 STLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRAA 620
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 621 ENLIQAFIM 629
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 77/166 (46%), Gaps = 20/166 (12%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAVVAR-------LLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA+++VHS I+ G + R +LV S Q L+G+ G + ++R T
Sbjct: 116 AQDALIKVHSAISNSIETAGDSEKKRKNKDECQILVPSSQSAILIGKAGATIKQLRVKTR 175
Query: 59 ASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKRP 110
+I+V PKD A C D V ++G +V+ ALF +++ + +E I P+
Sbjct: 176 TNIKVVPKDAADPEHSCAMEFDNFV-LVGESEAVKRALFAVSTIMYKFSPKEDI-PLDTT 233
Query: 111 GPNNGHSYLPP--FPEMPPPPFRPRHNP-ASPGSYPSPVGPFHSMD 153
P HS + P P PP P +P P S+P +G D
Sbjct: 234 VPETPHSIIIPSELPIYPPGGLYPASDPIVQPRSFPQLIGATTMQD 279
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 17 IAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH 76
++ +G + ++ R+L S +IG L+G+GG + MR+A+GA I V D R H
Sbjct: 301 VSSLGASQSEELIVRMLCPSDKIGQLIGKGGGTIKRMRQASGARIEV--DDSKAR----H 354
Query: 77 DEIVQVIGNYHSVQD 91
DE + I S D
Sbjct: 355 DECLITITATESTSD 369
>gi|294460692|gb|ADE75920.1| unknown [Picea sitchensis]
Length = 199
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 219 GFDASSGFTPRNRPVESGNHAAI---LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
G+D G++ +R +SG +++TT+EV IP+ + V G+ SN+ HIR+ISG
Sbjct: 88 GYDPIQGYSS-SRTTDSGFSGGFPKNVSTTTVEVTIPKNAVGSVLGKRGSNIQHIREISG 146
Query: 276 ANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315
A V ++D + GA++ V+ +SGT +Q AA+SL+ AFI G
Sbjct: 147 AKVKLHDSESGASDRVIEISGTPEQTHAAKSLLQAFIATG 186
>gi|242048332|ref|XP_002461912.1| hypothetical protein SORBIDRAFT_02g010550 [Sorghum bicolor]
gi|241925289|gb|EER98433.1| hypothetical protein SORBIDRAFT_02g010550 [Sorghum bicolor]
Length = 579
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 141/350 (40%), Gaps = 68/350 (19%)
Query: 6 AQDAVMRVHSRIAEIGF---EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
AQ +V + H G+ + Q V RLL+ + G L+G+ G I+ + TGA I
Sbjct: 257 AQGSVAKTHCPEGNTGYVQSKTLQQVSFRLLLPTYLAGGLIGKRGLIIKGIEDETGACID 316
Query: 63 VFPKDQAPRCGSPHDEI----VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSY 118
V AP G I +++ G ++++AL + +LR IF NN H
Sbjct: 317 V----GAPVTGCKERVITICALEITGEQVNIRNALSLVCWKLRNHIFS-NETDYNNSH-- 369
Query: 119 LPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPP 178
E+ + N S Y SMD + DH + S+G+D +
Sbjct: 370 -ISSSEIASSNATNQANNYSTSQY--------SMDN----AHKVDHGPSLSYGVDSVEKS 416
Query: 179 NSD------RIPF-------------------PYGSERP--GHGPTFDRPPS----PRSW 207
SD I P G +P G+G + S P W
Sbjct: 417 FSDLELSSSEIQLGSLGVQGLKVRGSNSHHFEPMGRMKPDNGNGVRINNSDSGIQNPTEW 476
Query: 208 TPQGVGGGDPRGFDASSG--FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
D + + G F+ N V HA+I T T E + + VYG+N S
Sbjct: 477 N-------DIVTNNLNHGIIFSEENNLVRGVEHASI-TRITYETAVSGSILTLVYGDNGS 528
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315
NL+ + ++SGA++ V +P E +++VSG DQ ++AQ L+ IL G
Sbjct: 529 NLAKLTEVSGADIAVYNPPSEGNEAMIVVSGPPDQAQSAQRLLVELILQG 578
>gi|242040159|ref|XP_002467474.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
gi|241921328|gb|EER94472.1| hypothetical protein SORBIDRAFT_01g028800 [Sorghum bicolor]
Length = 452
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 84/325 (25%), Positives = 135/325 (41%), Gaps = 69/325 (21%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQA-----------VVARLLVHSQQIGCLLGRGGHIVSEM 53
PA DA+MRV R+ IG G A ARLLV Q L+G+ G + +
Sbjct: 111 PAMDALMRVFKRV--IGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGKQGATIKAI 168
Query: 54 RRATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG 111
+ +TGA+IRV D+ R + + I+++ G+ V AL +++ LR+ +
Sbjct: 169 QESTGATIRVISVDERERPFYVTDDERIIEIQGDTEKVLKALQAVSNHLRKFLVD----- 223
Query: 112 PNNGHSYLPPFPEMPPPPFRPRH-NPASPGSYPSPVG------PFHSMDRGMGPSQPFDH 164
HS LP F + + R+ + S S+PS +G P +D + P +
Sbjct: 224 ----HSVLPLFEKTNTTVSQDRNGDGWSDMSHPS-IGSAQVNQPPSVVDEYILPVK---- 274
Query: 165 QAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASS 224
+ + +P+V N R + R P+ + P G+ G P
Sbjct: 275 RESLYLEREPLVDHNIHRSGVSL----------YGRDPALSTLRPSGIHGAGP------- 317
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
+LT T + IP Y + G +N+++IR SGA V + +
Sbjct: 318 ----------------LLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESL 361
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIH 309
+ V + GTS Q++AAQ LI
Sbjct: 362 GSPDDITVEIKGTSSQVQAAQQLIQ 386
>gi|356549146|ref|XP_003542958.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 436
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 69/326 (21%)
Query: 4 SPAQDAVMRVHSRIA---EIGFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRA 56
SPA DAV+RV R++ EI + + VA RLLV S Q L+G+ G ++ ++
Sbjct: 106 SPAMDAVIRVFKRVSGFSEIDAKNKASAVAFCSVRLLVASTQAINLIGKQGSLIKSIQEN 165
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
TGAS+RV D+ P + + IV++ G V AL + LR+ + +
Sbjct: 166 TGASVRVLSGDEVPFYAAADERIVELQGEAMKVLKALEAVVGHLRKFLV---------DN 216
Query: 117 SYLPPFPEMPPPPF-RPRHNPASPGSYPSPVGPFHSMDR-GMGPSQPFDHQ-----AAFS 169
S LP F + + R + PS HS + + P + A
Sbjct: 217 SVLPLFEKTYNATISQERQADTTWVDKPS----LHSASQPSIVTDIPLSTKRDSLFADRE 272
Query: 170 HGMDPMVPPNSDRIPFPYGSERPGHG---PTFDRPPSPRSWTPQGVGGGDPRGFDASSGF 226
+D ++PP++ + YG + G RP +P
Sbjct: 273 SQLDSLLPPSTMSM---YGQDSSLSGLRSSALSRPSAP---------------------- 307
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
I+T+ + IP Y + G +N+ +IR+ SGA + V + +
Sbjct: 308 -------------PIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV- 353
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
E +V + GTS Q++ AQ LI I
Sbjct: 354 PDEIIVEIKGTSSQVQTAQQLIQEVI 379
>gi|4314357|gb|AAD15568.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 649
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/335 (25%), Positives = 131/335 (39%), Gaps = 47/335 (14%)
Query: 2 RHSPAQDAVMRVHSRIAEI--------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
R+S AQ+A+ V +R EI G G V +LLV S G G E
Sbjct: 335 RYSHAQNALALVFARSVEIDVEKGLRPGLHNGAIVKTKLLVPSHFANSFNGNGNR---EA 391
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP- 112
ATGA + + +Q S ++ ++++ G Y VQ AL H++S+LRE + P K G
Sbjct: 392 IIATGADVHISVGNQVLEWISENEVVIEIKGEYSHVQKALTHVSSKLRENLLPKKVLGEM 451
Query: 113 ----------NNGHSYLPPF--PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQ 160
G S + + P +P+ S P M R G
Sbjct: 452 RARVSNPYESAGGRSQIYNLQPSQQPSNSIKPQDASRGDSLSVSAAVPDLKMVRS-GAEV 510
Query: 161 PFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSP---RSWTPQGVGGGDP 217
+ + + + N +P E G + S S P+ V
Sbjct: 511 LKSNSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGMKQLQMSSNGDVSSLPPRSVLAKQQ 570
Query: 218 RGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGAN 277
R S G + R +E + + + + +YG + + + +++QISGAN
Sbjct: 571 R---RSKGVSVRKITLE--------------LAVEKDALGSLYGRDGTGVDNLQQISGAN 613
Query: 278 VVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
V V DP TE V++SG +Q R A SLI + +
Sbjct: 614 VDVKDPT--GTEATVLISGNPEQARTAMSLIESIL 646
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 12/107 (11%)
Query: 4 SPAQDAVMRVHSR-IAEIGFEPGQAVV--------ARLLVHSQQIGCLLGRGGHIVSEMR 54
S AQ A++RV R + + G VV +L QIG +LG GG V MR
Sbjct: 107 SAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYCGILADRNQIGAVLGLGGKNVEWMR 166
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
R +GA IRV P P CG+ +DE++Q+ G+ +V+ AL ++S ++
Sbjct: 167 RNSGAMIRVLP---PPICGTKNDELIQITGDVLAVKKALVMVSSYIQ 210
>gi|242078463|ref|XP_002444000.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
gi|241940350|gb|EES13495.1| hypothetical protein SORBIDRAFT_07g005630 [Sorghum bicolor]
Length = 629
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/102 (41%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + ++I + +E + + RLLV ++ IGCL+GRGG IV++MR+ T A+I +
Sbjct: 370 SAAVEAVLLLQAKIND--YEDDRMNL-RLLVPNKVIGCLIGRGGSIVNDMRKKTKANILI 426
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
D+ PR S DE+V+V G ++DAL I RLRE +
Sbjct: 427 SKGDK-PRRASSSDELVEVSGEADKLRDALVQIILRLREDVL 467
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 78/352 (22%), Positives = 140/352 (39%), Gaps = 62/352 (17%)
Query: 6 AQDAVMRVHSRIAEI------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
AQDA++RVH+ I + + A +LV + Q ++G+ G ++ +R + A
Sbjct: 112 AQDALLRVHNAIVDTLHRNRRDSDKKNTEEANILVPASQASNVIGKSGAVIKHLRSTSRA 171
Query: 60 SIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMKRPG 111
I+V PKD + C D VQ+ G +V+ ALF +++ + +E I P++
Sbjct: 172 FIKVSPKDPSDATHSCAMSFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENI-PLETSI 230
Query: 112 PNNGHSYLPP--FPEMPPPPFRPRHNPASPGSYPSP--VGPFHSMDRGMGPSQPFDHQAA 167
P S + P P P F + A P +PS +G H + P A
Sbjct: 231 PEPTPSIIIPSELPVYPASNFYSAPDAAIPSVHPSLSILGSTHHVPELALP--------A 282
Query: 168 FSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFT 227
HG P+ P IP + G PS + G GG + SG
Sbjct: 283 DDHGRLPIYPSILPVIPTYSAPKCSGELEFRVLCPSGKIGLVIGRGGATIKNIRQESGAR 342
Query: 228 PRNRPVESGNHAAILTSTTIE-------------------------------VVIPQLYM 256
++ +I+T T+ E +++P +
Sbjct: 343 IDVDDAKNDREESIITITSTEAIDDVKSAAVEAVLLLQAKINDYEDDRMNLRLLVPNKVI 402
Query: 257 AHVYGENNSNLSHIRQISGANVVVND----PKPGATEGVVMVSGTSDQMRAA 304
+ G S ++ +R+ + AN++++ + +++ +V VSG +D++R A
Sbjct: 403 GCLIGRGGSIVNDMRKKTKANILISKGDKPRRASSSDELVEVSGEADKLRDA 454
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 45/66 (68%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E+ IP ++ V G+ +NL +IR+ISGA++ + + K + + +SGTS+Q ++A++L
Sbjct: 562 EMTIPASGLSKVMGKRGTNLDNIRKISGAHIEIIESKSSRHDHIAYISGTSEQRQSAENL 621
Query: 308 IHAFIL 313
I AFI+
Sbjct: 622 IKAFIM 627
>gi|226502036|ref|NP_001148766.1| nucleic acid binding protein [Zea mays]
gi|195621990|gb|ACG32825.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 134/328 (40%), Gaps = 68/328 (20%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQA-----------VVARLLVHSQQIGCLLGRGGHI 49
+ SPA DA+MRV R+ IG G A ARLLV Q L+G+ G
Sbjct: 97 LELSPAMDALMRVFKRV--IGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGKQGAT 154
Query: 50 VSEMRRATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107
+ ++ +TGA+IRV D+ R + + IV++ G+ V AL +++ LR+ +
Sbjct: 155 IKAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVD- 213
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG------PFHSMDRGMGPSQP 161
HS LP F + + + S S+PS +G P +D + P +
Sbjct: 214 --------HSVLPLFEKTNTAVSQDHNVGWSDMSHPS-IGSAQVNQPPSVVDEYILPVK- 263
Query: 162 FDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFD 221
+ +P++ N R + R P+ + P G+ G P
Sbjct: 264 ---RDTLYLEREPLLDHNIHRSGVSL----------YGRDPALSTLRPPGIHGAGP---- 306
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
+LT T + IP Y + G +N+++IR SGA V +
Sbjct: 307 -------------------LLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQ 347
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ + V + GTS Q++AAQ LI
Sbjct: 348 ESLGSPDDITVEIKGTSSQVQAAQQLIQ 375
>gi|383158165|gb|AFG61431.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 5 PAQDAVMRVHSRIAE---------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PAQDA++RVHS IA+ + GQ ARLLV + QIG L+G+GG+ + +MR
Sbjct: 18 PAQDALLRVHSVIAQESSVKDKDNDADKKGQQN-ARLLVANSQIGSLIGKGGNNIQKMRT 76
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
+GA I++ KD+ P C DE+V + G+ +V+ AL+ +++ L
Sbjct: 77 ESGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKKALYSVSAFL 121
>gi|361066701|gb|AEW07662.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158160|gb|AFG61426.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158161|gb|AFG61427.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158162|gb|AFG61428.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158163|gb|AFG61429.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158164|gb|AFG61430.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158166|gb|AFG61432.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158167|gb|AFG61433.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158168|gb|AFG61434.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158169|gb|AFG61435.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158170|gb|AFG61436.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158171|gb|AFG61437.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158172|gb|AFG61438.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158173|gb|AFG61439.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158174|gb|AFG61440.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158175|gb|AFG61441.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158176|gb|AFG61442.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
gi|383158177|gb|AFG61443.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 5 PAQDAVMRVHSRIAE---------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PAQDA++RVHS IA+ + GQ ARLLV + QIG L+G+GG+ + +MR
Sbjct: 18 PAQDALLRVHSVIAQESSVKDKDNDADKKGQQN-ARLLVANSQIGSLIGKGGNNIQKMRT 76
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
+GA I++ KD+ P C DE+V + G+ +V+ AL+ +++ L
Sbjct: 77 ESGAQIQIPRKDELPGCAFSFDELVVISGDAKAVKKALYSVSAFL 121
>gi|449463577|ref|XP_004149510.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 3-like
[Cucumis sativus]
Length = 468
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 130/322 (40%), Gaps = 65/322 (20%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
SPA DAV+RV R++ + +A + RLLV S Q L+G+ G ++ ++ +TGA
Sbjct: 141 SPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQAINLIGKQGSLIKSIQESTGA 200
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
S+RV D+ P + +V++ G V AL + LR+ + HS L
Sbjct: 201 SVRVLSGDEMPFYAGADERMVELQGESLKVLKALEGVVGHLRKFLVD---------HSVL 251
Query: 120 PPFPE---MPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQP-----FDHQAAFSHG 171
P F + P R A S + S + PS D +A F
Sbjct: 252 PLFEKSFNTPASQDRQTETWADKSSLLTASQSIISAE--YAPSTKRESLFLDREAHFDSH 309
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG-GGDPRGFDASSGFTPRN 230
+ +S I YG +R P+ RS GVG G P
Sbjct: 310 I------SSSGISL-YGQDRV--------LPTIRS---SGVGRSGGP------------- 338
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
I+T T + IP Y + G +N++ IR+ SGA + + + + E
Sbjct: 339 ----------IVTQVTQTMQIPLSYAEDIIGVGGTNIAFIRRNSGAILTIQESRGLPDEI 388
Query: 291 VVMVSGTSDQMRAAQSLIHAFI 312
V + GTS Q++ AQ LI +
Sbjct: 389 TVEIKGTSSQVQMAQQLIQEAV 410
>gi|334187557|ref|NP_196518.3| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|332004027|gb|AED91410.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 612
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Query: 4 SPAQDAVMRVHSRIAEIG----FEPG--QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S +Q A++ V S + E + G ++ ARL+V S QI CLLG G I + +++ T
Sbjct: 364 SESQRALVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRT 423
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNGH 116
GA I V +Q P+C S ++++VQ+ G + +V++A+ +TS LRE + + G
Sbjct: 424 GAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAV 483
Query: 117 SYLP-PFPEMPPP 128
+Y PFPE+ P
Sbjct: 484 NYSEDPFPELFSP 496
>gi|7671433|emb|CAB89374.1| putative protein [Arabidopsis thaliana]
Length = 567
Score = 74.3 bits (181), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 75/133 (56%), Gaps = 8/133 (6%)
Query: 4 SPAQDAVMRVHSRIAEIG----FEPG--QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S +Q A++ V S + E + G ++ ARL+V S QI CLLG G I + +++ T
Sbjct: 368 SESQRALVLVFSNMYENATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRT 427
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK-RPGPNNGH 116
GA I V +Q P+C S ++++VQ+ G + +V++A+ +TS LRE + + G
Sbjct: 428 GAFITVLNVEQNPKCVSENNQVVQISGEFPNVREAINQVTSMLREDLINQSFQRGSQYAV 487
Query: 117 SYLP-PFPEMPPP 128
+Y PFPE+ P
Sbjct: 488 NYSEDPFPELFSP 500
>gi|413955216|gb|AFW87865.1| nucleic acid binding protein [Zea mays]
Length = 441
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 132/328 (40%), Gaps = 68/328 (20%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQA-----------VVARLLVHSQQIGCLLGRGGHI 49
+ SPA DA+MRV R+ IG G A ARLLV Q L+G+ G
Sbjct: 97 LELSPAMDALMRVFKRV--IGITDGAAEGTQAAATPGVCAARLLVPGAQAINLIGKQGAT 154
Query: 50 VSEMRRATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107
+ ++ +TGA+IRV D+ R + + IV++ G+ V AL +++ LR+ +
Sbjct: 155 IKAIQESTGATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVD- 213
Query: 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAA 167
HS LP F + + + S S+PS S PS ++
Sbjct: 214 --------HSVLPLFEKTNTAVSQDHNVGWSDMSHPS----IGSAQVNQPPSVVDEY--- 258
Query: 168 FSHGMDPMVPPNSDRI------PFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFD 221
++P D + + R G + R P+ + P G+ G P
Sbjct: 259 -------ILPVKRDTLYLERETLLDHNIHRSGVS-LYGRDPALSTLRPPGIHGAGP---- 306
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
+LT T + IP Y + G +N+++IR SGA V +
Sbjct: 307 -------------------LLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQ 347
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ + V + GTS Q++AAQ LI
Sbjct: 348 ESLGSPDDITVEIKGTSSQVQAAQQLIQ 375
>gi|413917022|gb|AFW56954.1| hypothetical protein ZEAMMB73_179405 [Zea mays]
Length = 632
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 4/102 (3%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
S A +AV+ + ++I + + RLLV ++ IGCL+GRGG IV++MR+ T A+I +
Sbjct: 373 SAAVEAVLLLQAKIND---SEDDRMNLRLLVPNKVIGCLIGRGGSIVNDMRKKTKANILI 429
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
D+ PR S DE+V+V G ++DAL I RLRE +
Sbjct: 430 SKGDK-PRRASSSDELVEVSGEADKLRDALVQIILRLREAVL 470
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 47/67 (70%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+E+ +P ++ V G++ +NL +IR+ISGA++ + +PK E + +SGTS+Q +A++
Sbjct: 564 LEMTVPASGISKVMGKHGTNLDNIRKISGAHIEIIEPKSSRHEHIAYISGTSEQRHSAEN 623
Query: 307 LIHAFIL 313
LI AFI+
Sbjct: 624 LIKAFIM 630
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 73/158 (46%), Gaps = 20/158 (12%)
Query: 6 AQDAVMRVHSRIAEI---------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRA 56
AQDA++RVH+ I + + A +LV + Q ++G+ G ++ +R
Sbjct: 112 AQDALLRVHNAIVDALQTLHKNHKDSDKKSTEEANILVPASQASNVIGKSGAVIKHLRST 171
Query: 57 TGASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRL-----RETIFPMK 108
+ A I+V PKD + C D VQ+ G +V+ ALF +++ + +E I P++
Sbjct: 172 SRAFIKVSPKDPSDPTHSCAMSFDNFVQITGGAEAVKKALFGVSTIIYKHPSKENI-PLE 230
Query: 109 RPGPNNGHSYLPP--FPEMPPPPFRPRHNPASPGSYPS 144
P+ S + P P P F + A P +PS
Sbjct: 231 TSIPDPTPSIIIPSELPVYPASNFYSAPDAAIPSVHPS 268
>gi|212723602|ref|NP_001132277.1| uncharacterized protein LOC100193713 [Zea mays]
gi|194693942|gb|ACF81055.1| unknown [Zea mays]
Length = 510
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SPA +A++ +H +++ + + RL+V S ++GC++G GG ++++MRR TGA IRV
Sbjct: 94 SPAIEALILLHDKVSAPSEKHHSST--RLVVPSSKVGCIIGEGGKVITDMRRRTGAEIRV 151
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+ K P+ S DE+VQV G + AL I SRLR
Sbjct: 152 YSKADKPKYLSFDDELVQVAGPPTIARGALTEIASRLR 189
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 421 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 480
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 481 QSLLQGFI 488
>gi|361066699|gb|AEW07661.1| Pinus taeda anonymous locus 0_8463_01 genomic sequence
Length = 139
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 10/105 (9%)
Query: 5 PAQDAVMRVHSRIAE---------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
PAQDA++RVHS IA+ + GQ ARLLV + QIG L+G+GG+ + +MR
Sbjct: 18 PAQDALLRVHSVIAQESSAKDKDSDADKKGQQN-ARLLVANSQIGSLIGKGGNNIQKMRT 76
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
+GA I++ KD+ P C DE+V + G+ +V+ AL+ +++ L
Sbjct: 77 ESGAQIQIPRKDELPGCAFSFDELVVISGDATAVKKALYAVSAFL 121
>gi|195606546|gb|ACG25103.1| hypothetical protein [Zea mays]
Length = 100
Score = 73.2 bits (178), Expect = 2e-10, Method: Composition-based stats.
Identities = 41/96 (42%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 221 DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 280
DA R PV N A T TT EV+IP Y+ V G N S + I ++SGA++ V
Sbjct: 3 DAVPATDFRKGPVAIENQVATPTGTT-EVIIPCNYIGFVCGNNGSEIEEIEKMSGASITV 61
Query: 281 NDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGV 316
+DPK G V++ G ++ + AQSLIHAFI CG+
Sbjct: 62 HDPKAGDANSKVVICGDPEETKKAQSLIHAFIFCGL 97
>gi|224153471|ref|XP_002337357.1| predicted protein [Populus trichocarpa]
gi|222838904|gb|EEE77255.1| predicted protein [Populus trichocarpa]
Length = 103
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
++ RLLV S ++GC+LG+G ++EMRR A I V+PK++ P+C S +E+VQ+ GNY
Sbjct: 1 MITRLLVPSSKVGCILGQGSQDINEMRRLQ-AEICVYPKNEKPKCASEDEELVQISGNYG 59
Query: 88 SVQDALFHITSRLRETIFPMK 108
+D L I S + + MK
Sbjct: 60 VAKDVLVDIASDSEQELCMMK 80
>gi|358343600|ref|XP_003635888.1| Poly(rC)-binding protein [Medicago truncatula]
gi|358344098|ref|XP_003636130.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355501823|gb|AES83026.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355502065|gb|AES83268.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 241
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/156 (33%), Positives = 76/156 (48%), Gaps = 11/156 (7%)
Query: 159 SQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPR 218
+ P ++ + P P N D + + + + P F R P PQ G +
Sbjct: 91 NNPLTNEVLAEARIKPSFPLNKDTVRSKFITRKKSSFP-FARVP------PQNAGVYQAK 143
Query: 219 GF-DASSGFTPRNRPVE--SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISG 275
+ T VE GN A +T+TT+E+++ + VYGE+ NL IRQISG
Sbjct: 144 KVTENGESHTNLIENVEPGRGNIVATVTNTTVEIIVSEHVFGSVYGEDGGNLDRIRQISG 203
Query: 276 ANVVVNDP-KPGATEGVVMVSGTSDQMRAAQSLIHA 310
A+V V DP G + G V++SGT DQ AAQSL+ A
Sbjct: 204 ADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQA 239
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 3/67 (4%)
Query: 35 HSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALF 94
HS Q+G ++G+GG +S +R +G++IRV P AP C + +E++ + G Y +++AL
Sbjct: 27 HSSQVGAIVGKGGKNISNIRNNSGSNIRVCP---APHCAAKDEELILITGGYRCIENALR 83
Query: 95 HITSRLR 101
ITS +R
Sbjct: 84 KITSIIR 90
>gi|224116388|ref|XP_002317285.1| predicted protein [Populus trichocarpa]
gi|222860350|gb|EEE97897.1| predicted protein [Populus trichocarpa]
Length = 165
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 74/140 (52%), Gaps = 7/140 (5%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 65
A +A++ + +I + E V RLLV S+ IGC++G+GG ++E+R+ T A +R+
Sbjct: 2 AVEAILLLQGKIND---EDDDTVGCRLLVLSKVIGCIIGKGGSTINEIRKRTNADVRI-S 57
Query: 66 KDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN---GHSYLPPF 122
K P C +DE+V+V+G SV+DAL I RLR+ + K G N+ S P
Sbjct: 58 KGAKPNCADSNDELVEVVGEVSSVRDALVQIVLRLRDDVLKEKDGGLNSLVGTDSVYPVG 117
Query: 123 PEMPPPPFRPRHNPASPGSY 142
+ P P P +P Y
Sbjct: 118 AGLSIPSILPSVPPVAPMGY 137
>gi|147789222|emb|CAN69137.1| hypothetical protein VITISV_022037 [Vitis vinifera]
Length = 587
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 5/83 (6%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
S AQ+AV+RV RI E+ G PG V RLL + Q+G ++G+GG +V ++RR +G
Sbjct: 122 SAAQEAVLRVFERILEVAAVVDGVPPGGVVSCRLLAETSQVGSVIGKGGKVVEKIRRESG 181
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQ 81
+ I+V ++ P C + DE+V+
Sbjct: 182 SKIKVLTAEKLPTCAASTDEMVE 204
>gi|296087074|emb|CBI33448.3| unnamed protein product [Vitis vinifera]
Length = 333
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
SP QDA+ RVH ++ FE V +LLV S QIGC++G+GG I+ + +G
Sbjct: 55 SPTQDALFRVHDKVVSEKVHSEDFEEASQVTVQLLVTSDQIGCVIGKGGQIIQNIYSESG 114
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQVIGN 85
A I + D C DE+VQ+ G
Sbjct: 115 AQIYILKNDHLLSCALSFDELVQISGE 141
>gi|168039902|ref|XP_001772435.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162676232|gb|EDQ62717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 20/129 (15%)
Query: 4 SPAQDAVMRVHSRIAEIGFEP----------GQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
SPA + ++RVH R+ E G EP G V +RLLV + Q G L+GR G + +
Sbjct: 73 SPAMEGLLRVHRRVIE-GAEPESVDAEIAPGGAPVSSRLLVAATQAGSLIGRQGATIKSI 131
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+ +GA++RV P ++ P C D +V+V G+ +VQ A+ + S LR+ F + R
Sbjct: 132 QDTSGANVRVLPAEELPLCALADDRVVEVQGDPRNVQRAMELVVSHLRK--FLVDR---- 185
Query: 114 NGHSYLPPF 122
S LP F
Sbjct: 186 ---SVLPLF 191
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T T + IP Y + G +N+S++R+ SGA + + + + E V + G++ Q
Sbjct: 278 VITQVTQHMQIPLSYADAIIGSAGANISYMRRTSGATITIQETRSVPGEMTVEIHGSASQ 337
Query: 301 MRAAQSLIHAFI 312
++ AQ LI F+
Sbjct: 338 VQTAQQLIQNFM 349
>gi|414867775|tpg|DAA46332.1| TPA: nucleic acid binding protein [Zea mays]
Length = 448
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 53/317 (16%)
Query: 5 PAQDAVMRVHSRIAEI---GFEPGQAVV------ARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA DA+MRV R+ I E QA ARLLV Q L+G+ G + ++
Sbjct: 107 PAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAARLLVPGAQAINLIGKQGATIKAIQE 166
Query: 56 ATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+T A+IRV D+ R + + IV++ G+ V AL +++ LR+ +
Sbjct: 167 STSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVD------- 219
Query: 114 NGHSYLPPFPEMPPPPFRPRH-NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
HS LP F + + R+ + S S PS S PS D+
Sbjct: 220 --HSVLPLFEKTNTTVSQDRNGDGWSDMSRPS----IGSAQVNQLPSVLDDY--ILQVKR 271
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
DP+ + + R G + R P+ + P V G
Sbjct: 272 DPLYLERESLV--DHNIHRSGVS-LYGRDPALSTLRPSAVHGA----------------- 311
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
++LT T + IP Y + G +N+++IR SGA V + + + V
Sbjct: 312 ------GSLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITV 365
Query: 293 MVSGTSDQMRAAQSLIH 309
+ GTS Q++AAQ LI
Sbjct: 366 EIKGTSSQVQAAQQLIQ 382
>gi|145347410|ref|XP_001418160.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578389|gb|ABO96453.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 651
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 128/320 (40%), Gaps = 86/320 (26%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
AQ A+ RV+ I E G + RLLV + QIGCL+G+GG I+ ++R TGA++RV
Sbjct: 375 AQVALFRVYRCIVE---SAGNEIPLPFRLLVQTSQIGCLIGKGGSIIKQIRNETGATVRV 431
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDAL-FHITS-RLRETIFPMKRPGPNNGHSYLPP 121
P + P C + DE+++ IG + + AL I S RLR I
Sbjct: 432 LPSEALPSCAN-DDELLE-IGQWPADACALGIRIVSGRLRGNI----------------- 472
Query: 122 FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSD 181
RH A + D Q + G D
Sbjct: 473 -----------RHKAAER------------------LTSTADAQNTQTMGFDATWQQAE- 502
Query: 182 RIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI 241
PYG + +G P + + GG R PVE ++
Sbjct: 503 --LIPYGMTQTAYGS----PETVMMSKTKSTGG-------------ARAPPVEIAPGVSV 543
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA---------TEGVV 292
+ S +++ I ++ V G N+S RQ+SGA + + G+ ++ ++
Sbjct: 544 VNS--VQMAISSQHIGSVLGRGGCNISLARQVSGARIKLYPGAAGSRRTADRSVDSDRLL 601
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+SG+S+Q+ +AQ +I FI
Sbjct: 602 EISGSSEQVASAQDIIQRFI 621
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 61/127 (48%), Gaps = 18/127 (14%)
Query: 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG---- 84
+ RLLV Q+G L+G+GG ++S +R ++GA++RV P + P C S DE++Q+
Sbjct: 168 ICRLLVPRVQVGSLIGKGGTVISAIRASSGATVRVMPANMLPACASQGDELLQITAPSRD 227
Query: 85 ----------NYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRH 134
+ SV++AL I LRE +P K + S F M P
Sbjct: 228 ADGAERDQKLSMASVKNALRMIAKHLRE--YPSKNAATESNRSPFEAF--MIGNKTAPHA 283
Query: 135 NPASPGS 141
SPG+
Sbjct: 284 GVESPGA 290
>gi|427796273|gb|JAA63588.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 510
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 117/283 (41%), Gaps = 58/283 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R TGASI+V + P + + V V G
Sbjct: 172 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTVSGTAE 227
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
++ ++ I + E+ P G + P P MPP F G Y P
Sbjct: 228 AITKCIYQICCVMMES--------PPKGATIPYRPKPAMPPVIFAGGQAYTVQGQYAIP- 278
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A H P++P GH
Sbjct: 279 ----------HPDLTKLHQLALQHA--PLLP---------------GHS----------- 300
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
VG +P+ A+ T RP + A ++TT E+ IP + + G+ S
Sbjct: 301 -----VGAINPQAL-AALATTNNLRPNTAAAAIATASTTTTEMTIPNDLIGCIIGKGGSK 354
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + +++ + G+ + V +SGT + + AQ LI+
Sbjct: 355 INEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLIN 397
>gi|219888687|gb|ACL54718.1| unknown [Zea mays]
Length = 448
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 128/317 (40%), Gaps = 53/317 (16%)
Query: 5 PAQDAVMRVHSRIAEI---GFEPGQAVV------ARLLVHSQQIGCLLGRGGHIVSEMRR 55
PA DA+MRV R+ I E QA ARLLV Q L+G+ G + ++
Sbjct: 107 PAMDALMRVFKRVTGITDGAAEGTQAAATPDVCAARLLVPGAQAINLIGKQGATIKAIQE 166
Query: 56 ATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPN 113
+T A+IRV D+ R + + IV++ G+ V AL +++ LR+ +
Sbjct: 167 STSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVD------- 219
Query: 114 NGHSYLPPFPEMPPPPFRPRH-NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
HS LP F + + R+ + S S PS S PS D+
Sbjct: 220 --HSVLPLFEKTNTTVSQDRNGDGWSDMSRPS----IGSAQVNQLPSVLDDY--ILQVKR 271
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
DP+ + + R G + R P+ + P V G
Sbjct: 272 DPLYLERESLV--DHNIHRSGVS-LYGRDPALSTLRPSAVHGA----------------- 311
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
++LT T + IP Y + G +N+++IR SGA V + + + V
Sbjct: 312 ------GSLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITV 365
Query: 293 MVSGTSDQMRAAQSLIH 309
+ GTS Q++AAQ LI
Sbjct: 366 EIKGTSSQVQAAQQLIQ 382
>gi|356556240|ref|XP_003546434.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 442
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 81/320 (25%), Positives = 128/320 (40%), Gaps = 57/320 (17%)
Query: 4 SPAQDAVMRVHSRIA---EIGFEPGQAVVA------RLLVHSQQIGCLLGRGGHIVSEMR 54
SPA DAV+R+ R++ E E ++ RLLV S Q L+G+ G ++ ++
Sbjct: 112 SPAMDAVVRIFKRVSGLSETDAENKESAAGLAFCSIRLLVASTQAINLIGKQGSLIKSIQ 171
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
T AS+RV D+ + + IV++ G V AL + LR+ +
Sbjct: 172 ENTSASVRVLSGDEVQSYATVDERIVEIQGEALKVLKALEAVVGHLRKFLVD-------- 223
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
HS LP F + + + S H+ R + F+
Sbjct: 224 -HSVLPLFEK----TYNASTSQDRQAETWSDKSLLHTTSR----------TSIFAD---- 264
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDAS-SGFTPRNRPV 233
PY ++R DR S+ P G D+S SG R
Sbjct: 265 ----------IPYSTKR--DSVLADRESQLDSFLPSSTMS--LYGQDSSLSGV----RSS 306
Query: 234 ESGNHAAILTSTTIEVV-IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
G A + +T I+ + IP Y + G +N+ +IR+ SGA + V + + E VV
Sbjct: 307 ALGRVGAPIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV-PDEIVV 365
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+ GTS +++ AQ LI I
Sbjct: 366 EIKGTSSEVQTAQQLIQDVI 385
>gi|218184819|gb|EEC67246.1| hypothetical protein OsI_34185 [Oryza sativa Indica Group]
Length = 470
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 95/203 (46%), Gaps = 37/203 (18%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+++ + + RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 240 SPTIEALILLHSKVSTLA--ENHQLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRV 297
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFP 123
+ K P+ S +E+VQ ++F T L+ R GP + P+
Sbjct: 298 YSKADKPKYLSFDEELVQA---------SVFSFTLGLQNL-----RTGPAH-----DPYT 338
Query: 124 EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQ--AAFSHGMDPM------ 175
P F R P S S V P S +R ++ + + ++ S G D M
Sbjct: 339 VYPVEYFSKREYP----SGSSKVAPSASYERYAATTRLPNRELPSSISPGADYMSCRSYL 394
Query: 176 --VPPN--SDRIPFPYGSERPGH 194
VP + S+R+ G R G+
Sbjct: 395 DQVPTDRYSNRVTLQLGLLRAGN 417
>gi|169647179|gb|ACA61608.1| hypothetical protein AP1_E07.1 [Arabidopsis lyrata subsp. petraea]
Length = 532
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 10/110 (9%)
Query: 4 SPAQDAVMRVHSRI------AEI---GFEPGQA-VVARLLVHSQQIGCLLGRGGHIVSEM 53
S AQ A++RV RI A + G + G++ + R++V Q+ L+ +GG ++ +
Sbjct: 337 SSAQMALLRVLERIVFGDDAASVDGDGLDKGESESLCRMIVRGNQVDFLMSKGGKMIQRI 396
Query: 54 RRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
R +GA +R+ DQ P C P D ++Q+ G + SV+ AL IT+ L+E+
Sbjct: 397 REDSGAIVRISSTDQIPPCAFPGDVVIQITGKFSSVKKALLLITNCLQES 446
>gi|357147442|ref|XP_003574345.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 1-like
[Brachypodium distachyon]
Length = 447
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 126/321 (39%), Gaps = 60/321 (18%)
Query: 5 PAQDAVMRVHSR---IAEIGFE-------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
PA DA++RV R I ++ + P ARLLV Q L+G+ G + ++
Sbjct: 108 PAMDALIRVFKRVNGITDVAADSTTQTAAPPGVCAARLLVPGAQAINLIGKQGASIKAIQ 167
Query: 55 RATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP 112
TGA+IRV D+ R + + IV++ G V AL +++ LR+ +
Sbjct: 168 EGTGATIRVISIDERERPFYVTDDERIVEIQGETEKVLKALQAVSNHLRKFLV------- 220
Query: 113 NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
HS LP F + P S DR H + S +
Sbjct: 221 --DHSVLPLFEKTNAPV---------------------SQDRSADTWADMPHHSIVSTQV 257
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG--GGDPRGFDASSGFTPRN 230
+ P D P E H P + GV G DP A S P
Sbjct: 258 NQQ-PEVRDEYILPMKRE---HLYLEREPLVDHNIHRSGVSLYGRDP----ALSALRP-- 307
Query: 231 RPVESGNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 288
SG H+ +LT T + IP Y + G +N+++IR SGA V + +
Sbjct: 308 ----SGMHSVGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPD 363
Query: 289 EGVVMVSGTSDQMRAAQSLIH 309
+ V + GTS Q++AAQ LI
Sbjct: 364 DITVEIKGTSSQVQAAQQLIQ 384
>gi|359489188|ref|XP_002272998.2| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 343
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 4 SPAQDAVMRVHSRIAE----------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
S A++A+++V S I + +G A RLL+ Q GCL+G G + ++
Sbjct: 119 SDAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKL 178
Query: 54 RRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRE-------TI 104
R ++GA+I + P++Q P C S H D +VQ+ G+ +V AL I +LRE +I
Sbjct: 179 RNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISI 238
Query: 105 FPMKRPGPN-NGHSYLPP 121
P+ P N YL P
Sbjct: 239 SPIYNPNTNRTSQQYLDP 256
>gi|147832545|emb|CAN68300.1| hypothetical protein VITISV_009906 [Vitis vinifera]
Length = 408
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
E V RLLV S QIGC++G+GG I+ +R +GA IR+ D P C +E++Q+
Sbjct: 278 EEANQVTVRLLVPSNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSCSLSSNELIQI 337
Query: 83 IGNYHSVQDALFHITSRLRE 102
V+ L+ I SRL +
Sbjct: 338 SREPFIVRKILYQIASRLHD 357
>gi|297734587|emb|CBI16638.3| unnamed protein product [Vitis vinifera]
Length = 346
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 20/138 (14%)
Query: 4 SPAQDAVMRVHSRIAE----------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEM 53
S A++A+++V S I + +G A RLL+ Q GCL+G G + ++
Sbjct: 119 SDAENALLQVASLILKEDDSNTDALKVGVGHVVANAIRLLIAGSQAGCLIGMSGQNIEKL 178
Query: 54 RRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHSVQDALFHITSRLRE-------TI 104
R ++GA+I + P++Q P C S H D +VQ+ G+ +V AL I +LRE +I
Sbjct: 179 RNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPAVLKALEEIGCQLRENPPRQVISI 238
Query: 105 FPMKRPGPN-NGHSYLPP 121
P+ P N YL P
Sbjct: 239 SPIYNPNTNRTSQQYLDP 256
>gi|390458234|ref|XP_003732080.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
Length = 349
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 121/288 (42%), Gaps = 41/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R++TGA ++V D P + ++ + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQV-AGDMLP---NSTEQAITIAGMPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ETI + + P P P P Y + G
Sbjct: 154 SVTECVKQICLVMLETI-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRYSNTAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ N +++ HG T
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPLHLANLNQVARQQSHFAMMHGGT--------- 255
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
G G D N P G A++ T TT E+ IP + + G
Sbjct: 256 ----GFAGIDS------------NSPEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A +
Sbjct: 300 TNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINAKL 347
>gi|326511144|dbj|BAJ87586.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 450
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 125/322 (38%), Gaps = 63/322 (19%)
Query: 5 PAQDAVMRVHSRIAEIGFEPGQA-----------VVARLLVHSQQIGCLLGRGGHIVSEM 53
PA DA++RV R+ G G A ARL+V Q L+G+ G + +
Sbjct: 112 PAMDALIRVFKRVN--GISDGAAEGTQTSAAPGVCAARLVVPGAQAINLIGKQGASIKAI 169
Query: 54 RRATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG 111
+ TGA+IRV D+ R + + IV++ G V AL +++ LR+ +
Sbjct: 170 QEGTGATIRVISVDERDRPFYVTDDERIVEIQGETEKVLKALQAVSNHLRKFLV------ 223
Query: 112 PNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHG 171
HS LP F + P S DR H + S
Sbjct: 224 ---DHSVLPLFEKTNAPV---------------------SQDRSAETWNDMPHHSIVSTQ 259
Query: 172 MDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVG--GGDPRGFDASSGFTPR 229
++ P D P + H P + GV G DP A S P
Sbjct: 260 VNQQ-PEVRDEYVLPMKRD---HLYLEREPLVEHNIHRSGVSLYGRDP----ALSALRP- 310
Query: 230 NRPVESGNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
SG H A +LT T + IP Y + G +N+++IR SGA V + +
Sbjct: 311 -----SGMHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSP 365
Query: 288 TEGVVMVSGTSDQMRAAQSLIH 309
+ V + GTS Q+++AQ LI
Sbjct: 366 DDITVEIKGTSSQVQSAQQLIQ 387
>gi|403286483|ref|XP_003934516.1| PREDICTED: poly(rC)-binding protein 1-like isoform 1 [Saimiri
boliviensis boliviensis]
gi|403286485|ref|XP_003934517.1| PREDICTED: poly(rC)-binding protein 1-like isoform 2 [Saimiri
boliviensis boliviensis]
Length = 376
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 125/288 (43%), Gaps = 45/288 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + ++ + V
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-SGDMLP---NSTEQAITVAVVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPE--MPPPPFRPRHNPASPGSYPSP 145
SV + + I + ET LP P+ + P P++P PAS SP
Sbjct: 154 SVTECVQQICLVMLET---------------LPQCPQGRVMPIPYQPM--PAS-----SP 191
Query: 146 VGPFHSMDRGMGPSQPFDHQAAFSHGM-DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSP 204
V DRG A + H D VPP + P H ++
Sbjct: 192 VTCAGGQDRG-------SDAAGYPHATRDLGVPPLDACSTQGQHTISPLHLAKLNQVARQ 244
Query: 205 RSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGE 262
+S GG G ++SS P G A++ T TT E+ IP + + G
Sbjct: 245 QSHIAMLHGGTGFAGIESSS-------PEVKGYRASLDASTQTTHELTIPNNLIGCIIGR 297
Query: 263 NNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 298 QGVNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|308804768|ref|XP_003079696.1| putative KH domain containing protein (ISS) [Ostreococcus tauri]
gi|116058152|emb|CAL53341.1| putative KH domain containing protein (ISS), partial [Ostreococcus
tauri]
Length = 709
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
RLLV + QIGCL+G+GG I+ ++R TGA++RV P D P C + DE++++
Sbjct: 429 RLLVQTSQIGCLIGKGGSIIRQIRNETGATVRVLPSDALPACANADDELLEI 480
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 15/111 (13%)
Query: 25 GQAV-VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
G+AV + RLLV Q+G L+G+GG ++S +R ++GA++R+ P P C S DE++Q+
Sbjct: 189 GRAVPICRLLVPRAQVGSLIGKGGAVISAIRASSGATVRLMPATMLPTCASRGDELLQIT 248
Query: 84 -------GN-----YHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPF 122
GN SV+ AL + LRE +P K + S L F
Sbjct: 249 APVRDTDGNDVDLALASVKSALRMVAKNLRE--YPTKMATSESFRSPLEAF 297
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA-----------TE 289
+ T ++ + I ++ V G N+S RQ+SGA + + PGA +E
Sbjct: 571 VTTVNSVHMTISSQHIGSVLGRGGCNISIARQVSGARIKL---YPGASGRNGARRAQDSE 627
Query: 290 GVVMVSGTSDQMRAAQSLIHAFI 312
++ +SGTS+Q+ +AQ++I FI
Sbjct: 628 RLLEISGTSEQVSSAQTIIERFI 650
>gi|147767494|emb|CAN60206.1| hypothetical protein VITISV_036062 [Vitis vinifera]
Length = 242
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 14/137 (10%)
Query: 7 QDAVMRVHSRIAEI-----GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
+DA+ RVH ++ FE V +LLV S QIGC++G+GG I+ + +GA I
Sbjct: 56 EDALFRVHDKVVSEKVHSEDFEEASQVTVQLLVTSDQIGCVIGKGGQIIQNIYSESGAQI 115
Query: 62 RVFPKDQAPRCGSPHDEIVQV------IGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+ D C DE+VQ+ +G F I L +I P+ G ++G
Sbjct: 116 YILKNDHLLSCALSFDELVQISGERPLLGRLFIKLHLFFMIIQHLLASIVPI---GYSSG 172
Query: 116 HSYLPPFPEMPPPPFRP 132
S + P P P
Sbjct: 173 GSLIGPTSGAPIMGLAP 189
>gi|242093092|ref|XP_002437036.1| hypothetical protein SORBIDRAFT_10g019330 [Sorghum bicolor]
gi|241915259|gb|EER88403.1| hypothetical protein SORBIDRAFT_10g019330 [Sorghum bicolor]
Length = 319
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 17/97 (17%)
Query: 4 SPAQDAVMRVHSRIAEI--------------GFEPGQ--AVVARLLVHSQQIGCLLGRGG 47
SPAQ+A++ VH RI E G +P RL+V +GCLLG+GG
Sbjct: 151 SPAQEALLMVHRRILETDADDGDEDGEYGPRGKDPRDRGKTTTRLIVPKLHVGCLLGKGG 210
Query: 48 HIVSEMRRATGASIRVFPKDQ-APRCGSPHDEIVQVI 83
I+ +MR T IR+ P+DQ PRC S +E+VQ +
Sbjct: 211 KIIEQMRMETKTHIRILPRDQHTPRCVSLSEEVVQSL 247
>gi|224079280|ref|XP_002305814.1| predicted protein [Populus trichocarpa]
gi|222848778|gb|EEE86325.1| predicted protein [Populus trichocarpa]
Length = 270
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 52/74 (70%), Gaps = 4/74 (5%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+A++++ ++ +E E G ++ RLLV S ++GC+LG+G ++EMRR A IRV+PK+
Sbjct: 65 EAILQLQNKTSEFS-EKG--MITRLLVPSSKVGCILGQGSQDINEMRRLQ-AEIRVYPKN 120
Query: 68 QAPRCGSPHDEIVQ 81
+ P+C S +E+VQ
Sbjct: 121 EKPKCASEDEELVQ 134
>gi|125597123|gb|EAZ36903.1| hypothetical protein OsJ_21247 [Oryza sativa Japonica Group]
Length = 114
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 56/103 (54%), Gaps = 1/103 (0%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAA-ILTSTTIEVVIPQLYMAHVYGENNSNLSHIR 271
GGG F+ S R + A ++T +T+EVVIP+ +A + S L+ I
Sbjct: 4 GGGANMSFEQGSNINDDMRQSAAKRFAVPLVTRSTLEVVIPKSAVASLTMRAGSKLAQIS 63
Query: 272 QISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
++SGA V + D +P A E VV +SGT +Q AQSL+ FIL
Sbjct: 64 EMSGATVTLADERPDAIEKVVRISGTPEQADKAQSLLQGFILS 106
>gi|47214279|emb|CAG01336.1| unnamed protein product [Tetraodon nigroviridis]
Length = 408
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/283 (25%), Positives = 121/283 (42%), Gaps = 42/283 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + EMR +TGA ++V D P + + V + G
Sbjct: 150 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV-AGDMLP---NSTERAVTISGTPE 205
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ + I + E+ P G + P+RP+ P S P
Sbjct: 206 AIIQCVKQICVVMLES--------PPKGATI----------PYRPK-----PASTPVIFS 242
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
+ + P Q + H + PP + P G P T+ PP+ R
Sbjct: 243 GGQAYTIQGQYAIPHPDQLSKLHQLAMQQPPFT-----PLGQTTPAFPGTY--PPTWRPR 295
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
PQ + P +SS T +++GN A +T E+ IP + + G + +
Sbjct: 296 WPQLLLSFVPADARSSSSVTA---ALDAGNQA-----STHELTIPNDLIGCIIGRQGTKI 347
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ IRQ+SGA + + + G++E + ++GT + AQ LI+A
Sbjct: 348 NEIRQMSGAQIKIANAMEGSSERQITITGTPANISLAQYLINA 390
>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
Length = 952
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 2/78 (2%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP +A++ +HS+ + + + RL+V S ++GC+LG GG +++EMRR TGA IRV
Sbjct: 581 SPTIEALILLHSKASTLA--ENHQLTTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRV 638
Query: 64 FPKDQAPRCGSPHDEIVQ 81
+ K P+ S +E+VQ
Sbjct: 639 YSKADKPKYLSFDEELVQ 656
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
N +LS + ISGA V +++ PG++E +V + G DQ++AAQSL+ FI
Sbjct: 885 NWSLSLVLVISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLLQGFI 933
>gi|339258170|ref|XP_003369271.1| putative KH domain protein [Trichinella spiralis]
gi|316966532|gb|EFV51093.1| putative KH domain protein [Trichinella spiralis]
Length = 640
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 67/290 (23%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE-IVQVIG 84
Q R+LVH Q G ++GR G + E+R TGA IRV+ + C E ++Q G
Sbjct: 356 QEAEVRMLVHQSQAGAIIGRAGFKIKELRDITGAGIRVYSE-----CAPLSTERVIQFSG 410
Query: 85 NYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPS 144
+ + +A+ H+ ET
Sbjct: 411 DKEKIVNAIRHVKEICEET----------------------------------------- 429
Query: 145 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSP 204
P ++R + + +D A +G +DR + R G SP
Sbjct: 430 ---PIKGVER-LYDANNYDMSYALDYG-----GYTTDRNWRSNSTTRRSSGI---HSSSP 477
Query: 205 RSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
+ TP G + A G++P + E+ L +T ++V IP+ + G+
Sbjct: 478 AASTPHFTGVNEISPMQA-LGYSPMSLYAEN------LIAT-VQVTIPKELGGTIIGKGG 529
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
++ IR+ SGA +VV+ P P + E ++ +SGT+ Q++ Q L+ I C
Sbjct: 530 ERINRIREESGAQIVVDPPTPDSDERIITISGTTSQIKLGQYLLQQCIPC 579
>gi|302803885|ref|XP_002983695.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
gi|300148532|gb|EFJ15191.1| hypothetical protein SELMODRAFT_445667 [Selaginella moellendorffii]
Length = 1020
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 67/282 (23%), Positives = 110/282 (39%), Gaps = 65/282 (23%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP--HDEIVQV 82
G + RLL+ Q G L+G+ G + +R ++ AS+RV P DQ P C + D +VQ+
Sbjct: 595 GSPNLTRLLIAGSQAGSLIGKAGANIKNIRGSSSASVRVLPSDQLPLCSAACETDRLVQI 654
Query: 83 IGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSY 142
G +VQ A+ + + LR+ PP +P P
Sbjct: 655 SGEVAAVQMAIELVAANLRDN----------------PPKETVPTTP------------- 685
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
+ + A+ G+D ++ P+ S +G
Sbjct: 686 --------------------EAKTAYFLGID---GKTGQQVLLPHSSVAAVYG------H 716
Query: 203 SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAA----ILTSTTIEVVIPQLYMAH 258
SP S G+ P A +G P N AA +L + E+ +P M
Sbjct: 717 SPSSMALYGL-QPHPLAGPAYAGGVLAQAPPLYANPAARLPPMLPKVSAEMSVPSSVMGG 775
Query: 259 VYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ G+ ++SH+R +SGA + VN K + E ++ GT +Q
Sbjct: 776 LIGKGGFHISHMRSVSGATIKVNGSKESSVERTILFEGTQEQ 817
>gi|413933627|gb|AFW68178.1| nucleic acid binding protein [Zea mays]
Length = 637
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 85/323 (26%), Positives = 132/323 (40%), Gaps = 55/323 (17%)
Query: 4 SPAQDAVMRVHSRIAEIG--------FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA D ++RVH RI + G RLLV S Q G L+G+ G + ++
Sbjct: 291 SPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQD 350
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
++ + +R+ + P D +V++ G VQ+A+ I+S LR+ F + R
Sbjct: 351 SSKSIVRIV--ENVPPVALNDDRVVEIQGEPLGVQEAVELISSHLRK--FLVDR------ 400
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM 175
S LP F PR P P P GP + R M P
Sbjct: 401 -SVLPLFEAHMKMHGMPREQPVPP---PQHWGPPQTWIRPPNIPPGGPGFGGNPQFMHPR 456
Query: 176 VPPNSDRIP---FPYGSERPGHGPTF---DRPPSPRSWTPQGVGGGDPRGFDASSGFTPR 229
P P P+ ++P +G + + PPS S T G P
Sbjct: 457 --PQDSYYPSPDVPHMEKQPHYGISAYGREAPPSGASAT-----GNQP------------ 497
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
P +G+ A ++ IP Y V G +++S+IR+ SGA V + + + E
Sbjct: 498 --PSHAGSQVAH------DMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGE 549
Query: 290 GVVMVSGTSDQMRAAQSLIHAFI 312
V ++GT+ Q++ AQ LI F+
Sbjct: 550 MTVEITGTAAQVQTAQQLIQNFM 572
>gi|226528431|ref|NP_001149906.1| nucleic acid binding protein [Zea mays]
gi|195635381|gb|ACG37159.1| nucleic acid binding protein [Zea mays]
Length = 448
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 125/319 (39%), Gaps = 57/319 (17%)
Query: 5 PAQDAVMRVHSRIAEIGFEPG-----------QAVVARLLVHSQQIGCLLGRGGHIVSEM 53
PA DA+MRV + G G ARLLV Q L+G+ G + +
Sbjct: 107 PAMDALMRVFKXVT--GITDGAAEXTQAAATPDVCAARLLVPGAQAINLIGKQGATIKAI 164
Query: 54 RRATGASIRVFPKDQAPR--CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPG 111
+ +T A+IRV D+ R + + IV++ G+ V AL +++ LR+ +
Sbjct: 165 QESTSATIRVISVDEHERPFYVTDDERIVEIQGDTEKVLKALQAVSNHLRKFLVD----- 219
Query: 112 PNNGHSYLPPFPEMPPPPFRPRH-NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSH 170
HS LP F + + R+ + S S PS S PS D+
Sbjct: 220 ----HSVLPLFEKTNTTVSQDRNGDGWSDMSRPS----IGSAQVNQLPSVLDDYILQVKR 271
Query: 171 GMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN 230
DP+ + + R G + R P+ + P V G
Sbjct: 272 --DPLYLERESLVD--HNIHRSGVS-LYGRDPALSTLRPSAVHGA--------------- 311
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
++LT T + IP Y + G +N+++IR SGA V + + +
Sbjct: 312 --------GSLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDI 363
Query: 291 VVMVSGTSDQMRAAQSLIH 309
V + GTS Q++AAQ LI
Sbjct: 364 TVEIKGTSSQVQAAQQLIQ 382
>gi|357121091|ref|XP_003562255.1| PREDICTED: poly(rC)-binding protein 1-like [Brachypodium
distachyon]
Length = 518
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 81/317 (25%), Positives = 128/317 (40%), Gaps = 44/317 (13%)
Query: 4 SPAQDAVMRVHSRIA-----EIG-FEPGQAVV--ARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA D ++R+H RIA E G + G + RLLV + Q G L+G+ G + ++
Sbjct: 174 SPAMDGLLRIHKRIADGSDGEFGQTQRGTGTMGPTRLLVPASQAGSLIGKQGATIKSIQD 233
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
++ A +R+ + P D +V++ G SVQ A+ I S LR+ +
Sbjct: 234 SSKAVVRIV--ENVPPVALNDDRVVEIQGEPLSVQKAVELIASHLRKFLV---------D 282
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM 175
HS LP F + PR P P + GP G
Sbjct: 283 HSVLPLFEQQMKMHSMPREQPM-------PAPQQWGPPQPWGPPPNHPPGGPGYAGNPQF 335
Query: 176 VPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVES 235
+PP +P P P ++ P + G P G AS P +
Sbjct: 336 MPPRPQDNYYP-----PPDVPPMEKQPH---YGISAYGREAPSGVSASGNQPPSH----- 382
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
+ + T + IP Y V G +++S+IR+ SGA V + + + E V +
Sbjct: 383 -----VASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGAAVTIQESRGAPGEMNVEII 437
Query: 296 GTSDQMRAAQSLIHAFI 312
G++ Q++ AQ LI F+
Sbjct: 438 GSASQVQTAQQLIQNFM 454
>gi|297803502|ref|XP_002869635.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
gi|297315471|gb|EFH45894.1| hypothetical protein ARALYDRAFT_492216 [Arabidopsis lyrata subsp.
lyrata]
Length = 495
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 76/321 (23%), Positives = 127/321 (39%), Gaps = 59/321 (18%)
Query: 4 SPAQDAVMRVHSRIA--------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DAV+RV R++ ++ RLLV S Q L+G+ G ++ +
Sbjct: 134 SPAMDAVLRVFRRVSGLPDNDDDDVQNAGSAFCSVRLLVASTQAINLIGKQGSLIKSIVE 193
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+GAS+R+ +++ P + + IV + G + AL I LR+ +
Sbjct: 194 NSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLRKFLV---------D 244
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM 175
H+ +P F + Y + V +P + H +
Sbjct: 245 HTVVPLFEKQ----------------YLARVSQTRQ-------EEPLAESKSSLHTI--- 278
Query: 176 VPPNSDRIPFPYGSERPGHGPTF-DRPPSPRSWT-PQGVG--GGDPRGFDASSGFTPRNR 231
S + P S P F DR S P GV DP + R+
Sbjct: 279 ----SSNVIEPDFSLLARRDPLFLDRDARVESRVQPTGVSIYSQDPV-------LSARHS 327
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
P + +A +T + + IP Y + G +N+++IR+ SGA + + + P +
Sbjct: 328 PGLARVSSAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKE-SPHPDQIT 386
Query: 292 VMVSGTSDQMRAAQSLIHAFI 312
V + GTS Q++ A+ LI FI
Sbjct: 387 VEIKGTSSQVQTAEQLIQEFI 407
>gi|388509486|gb|AFK42809.1| unknown [Lotus japonicus]
Length = 134
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 64/112 (57%), Gaps = 3/112 (2%)
Query: 205 RSWTPQGV-GGGDPRGFDASSGFTPRNRPVESGNHAAILT--STTIEVVIPQLYMAHVYG 261
+ W PQG+ GG G +G PR G + I+T S T+EVV+P+ + +YG
Sbjct: 17 KPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATVEVVVPRAVVPEIYG 76
Query: 262 ENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
E+ L I QI A +++ DPKPGA E +++SGT +Q AQS I AF++
Sbjct: 77 EDGECLRQILQIFDAKIMITDPKPGAVETKIIISGTPEQTHTAQSFIQAFVM 128
>gi|226497902|ref|NP_001151605.1| nucleic acid binding protein [Zea mays]
gi|195648058|gb|ACG43497.1| nucleic acid binding protein [Zea mays]
Length = 524
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 130/320 (40%), Gaps = 52/320 (16%)
Query: 4 SPAQDAVMRVHSRIAEIG--------FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA D ++RVH RI + G RLLV S Q G L+G+ G + ++
Sbjct: 181 SPAMDGLLRVHKRITDSSDGESSQPQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQD 240
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
++ + +R+ + P D +V++ G VQ A+ I+S LR+ F + R
Sbjct: 241 SSKSIVRIV--ENVPPVALNDDRVVEIQGEPLGVQKAVELISSHLRK--FLVDR------ 290
Query: 116 HSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPM 175
S LP F PR P P P GP + R M P
Sbjct: 291 -SVLPLFEAHMKMHGMPREQPVPP---PQHWGPPQTWIRPPNIPPGGPGFGGNPQFMPPR 346
Query: 176 VPPNSDRIPFPYGSERPGHGPTF---DRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRP 232
P P P ++P +G + + PPS S T G P P
Sbjct: 347 --PQDSYYPPPDVEKQPHYGISAYGREAPPSGASAT-----GNQP--------------P 385
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
+G+ A ++ IP Y V G +++S+IR+ SGA V + + + + V
Sbjct: 386 SHAGSQVAH------DMHIPLAYADAVIGAAGASISYIRRHSGATVTIQESRGAPGDMTV 439
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
++GT+ Q++ AQ LI F+
Sbjct: 440 EITGTAAQVQTAQQLIQNFM 459
>gi|357508127|ref|XP_003624352.1| KH domain-containing protein [Medicago truncatula]
gi|355499367|gb|AES80570.1| KH domain-containing protein [Medicago truncatula]
Length = 188
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+ V + + +IG G+AV+ V + IGCL+G+GG I++EMRR T ++IR+ K+
Sbjct: 14 EVVQLLQEELTKIGHSMGKAVI----VAANMIGCLIGKGGSIITEMRRLTRSNIRILSKE 69
Query: 68 QAPRCGSPHDEIVQ 81
P+ S DE+VQ
Sbjct: 70 NLPKIASDDDEMVQ 83
>gi|30684386|ref|NP_849406.1| KH domain-containing protein [Arabidopsis thaliana]
gi|24762211|gb|AAN64172.1| putative KH domain protein [Arabidopsis thaliana]
gi|332658635|gb|AEE84035.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 532
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + I + E + V +LLV S+ IGC++G+ G +++E+R+ T A+I
Sbjct: 373 KSMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANIC 429
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ D++V+V G SV+DAL I RLRE +
Sbjct: 430 ISK--------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVL 464
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 AQDAVMRVHSRIA--------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQDA+++V+ I + + RLLV Q L+G+ G + +RR T
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRT 168
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITS 98
AS++V KD + C +D +V + G SV+ ALF +++
Sbjct: 169 RASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
>gi|7486302|pir||T04533 hypothetical protein F28J12.30 - Arabidopsis thaliana
gi|2832642|emb|CAA16717.1| putative protein [Arabidopsis thaliana]
gi|7268630|emb|CAB78839.1| putative protein [Arabidopsis thaliana]
Length = 846
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + I + E + V +LLV S+ IGC++G+ G +++E+R+ T A+I
Sbjct: 695 KSMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANIC 751
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 108
+ D++V+V G SV+DAL I RLRE + K
Sbjct: 752 ISK--------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVLGDK 789
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 AQDAVMRVHSRIA--------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQDA+++V+ I + + RLLV Q L+G+ G + +RR T
Sbjct: 417 AQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRT 476
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITS 98
AS++V KD + C +D +V + G SV+ ALF +++
Sbjct: 477 RASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 520
>gi|297804330|ref|XP_002870049.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297315885|gb|EFH46308.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 605
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 49/71 (69%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+S+ +E++IP M+ V G+ NL +IR+ISGA + ++D K + + ++SGT +QMR
Sbjct: 533 SSSALEILIPANAMSKVMGKGGGNLENIRRISGAMIEISDSKTSQGDHIALLSGTLEQMR 592
Query: 303 AAQSLIHAFIL 313
A++L+ AFI+
Sbjct: 593 CAENLVQAFIM 603
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + I + E + V +L V S+ IGC++G+ G +++E+R+ T A+I
Sbjct: 372 KSMAVEAVLLLQEYIND---EDAEKVKMQLFVSSKDIGCVIGKSGSVINEIRKRTNANIC 428
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ D++V+V G SV++A+ I RLRE +
Sbjct: 429 ISK--------GKKDDLVEVAGEISSVRNAIIQIVLRLREDVL 463
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 6 AQDAVMRVHSRIA-----EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
AQDA+++V+ I I + LLV S Q L+G+ G + +R T AS
Sbjct: 112 AQDALLKVYDAIVASDEENIKIDRDDKKECLLLVPSSQSFSLIGKAGENIKRIRSTTRAS 171
Query: 61 IRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITSRL 100
++V KD + C +D IV + G SV+ ALF +++ L
Sbjct: 172 VKVVSKDVSDPSHVCAMDYDNIVVISGEPESVKKALFAVSAIL 214
>gi|147789387|emb|CAN73316.1| hypothetical protein VITISV_043333 [Vitis vinifera]
Length = 511
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
SP Q+ + RVH R+ V + QIGC++G+GG I+ +R +GA IR+
Sbjct: 359 SPTQNVLFRVHDRVIS------DEVHDENFEEASQIGCVIGKGGQIIQSIRSESGAQIRI 412
Query: 64 FPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
D P D+++Q+ G V AL+ I SRL +
Sbjct: 413 LKDDHLPSRVLSSDKLIQISGEPSLVMKALYQIASRLHD 451
>gi|15236863|ref|NP_193572.1| KH domain-containing protein [Arabidopsis thaliana]
gi|15214341|sp|P58223.1|Y4837_ARATH RecName: Full=KH domain-containing protein At4g18375
gi|22136632|gb|AAM91635.1| unknown protein [Arabidopsis thaliana]
gi|332658636|gb|AEE84036.1| KH domain-containing protein [Arabidopsis thaliana]
Length = 606
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + I + E + V +LLV S+ IGC++G+ G +++E+R+ T A+I
Sbjct: 373 KSMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANIC 429
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ D++V+V G SV+DAL I RLRE +
Sbjct: 430 ISK--------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVL 464
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 48/71 (67%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+S+ +E++IP M+ V G+ NL +IR+ISGA + ++ K + + ++SGT +QMR
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593
Query: 303 AAQSLIHAFIL 313
A++L+ AF++
Sbjct: 594 CAENLVQAFVM 604
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 AQDAVMRVHSRIA--------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQDA+++V+ I + + RLLV Q L+G+ G + +RR T
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRT 168
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITS 98
AS++V KD + C +D +V + G SV+ ALF +++
Sbjct: 169 RASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
>gi|297742912|emb|CBI35779.3| unnamed protein product [Vitis vinifera]
Length = 340
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P RLLV QIGC++G+GG I+ +R +GA IR+ D P C +E++Q+
Sbjct: 126 PSGTFTVRLLVSFNQIGCVIGKGGQIIQSIRSESGAQIRILKDDHLPSCSLSSNELIQIS 185
Query: 84 GNYHSVQDALFHITSRLRE 102
V+ L+ I SRL +
Sbjct: 186 KEPSIVRKILYQIASRLHD 204
>gi|413933967|gb|AFW68518.1| hypothetical protein ZEAMMB73_983755, partial [Zea mays]
Length = 131
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 17/100 (17%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQ 272
G D RG ++SGF S+TIE+ IP + + G NL+ IRQ
Sbjct: 28 GLEDYRGLPSASGF-----------------SSTIELRIPNSSLESIVGVGGVNLAEIRQ 70
Query: 273 ISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
ISGA + +++ G++E VV + GT DQ +AAQSL+ FI
Sbjct: 71 ISGARLRLHEAHAGSSESVVEIQGTLDQAKAAQSLLEGFI 110
>gi|384248562|gb|EIE22046.1| hypothetical protein COCSUDRAFT_43031 [Coccomyxa subellipsoidea
C-169]
Length = 243
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 2 RHS-PAQDAVMRVHSRIAEIGFEPG-----QAVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
RH+ AQ+A+ +VH+R+ E E G R+LV Q GCL+G+ G I+ E+R
Sbjct: 160 RHTDAAQEALFKVHARVHE--HEEGPHPPPANATTRMLVCHTQAGCLIGKAGAIIKEIRE 217
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQ 81
A+GA I++ P + P CG +D +VQ
Sbjct: 218 ASGAHIKILPAEDLPPCGLSNDRVVQ 243
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 13/86 (15%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P V RLLV S+++G ++G+ G IV +R TGA IRV + P C DE V VI
Sbjct: 99 PQTETVYRLLVQSKKVGSVIGKAGTIVKAIRDETGARIRVV--EGVPNC----DERVIVI 152
Query: 84 G-------NYHSVQDALFHITSRLRE 102
+ + Q+ALF + +R+ E
Sbjct: 153 SARSDAARHTDAAQEALFKVHARVHE 178
>gi|147855522|emb|CAN83854.1| hypothetical protein VITISV_031103 [Vitis vinifera]
Length = 321
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q GCL+G G + ++R ++GA+I + P++Q P C S H D +VQ+ G+ +
Sbjct: 156 RLLIAGSQAGCLIGMSGQNIEKLRNSSGATITILPQNQLPLCASAHDSDRMVQISGDVPA 215
Query: 89 VQDALFHITSRLRET 103
V AL I +LR T
Sbjct: 216 VLKALEEIGCQLRTT 230
>gi|74007267|ref|XP_548937.2| PREDICTED: poly(rC)-binding protein 1-like [Canis lupus familiaris]
Length = 362
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 74/286 (25%), Positives = 122/286 (42%), Gaps = 35/286 (12%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPAYQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ P + P++P PAS SPV
Sbjct: 154 SVTECVKQICLVMLETLSQ-------------SPQGRVMTIPYQPM--PAS-----SPVI 193
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFP-YGSERPGHGPTFDRPPSPRS 206
DR G + + H A + H + P D + P ++ +S
Sbjct: 194 CAGGQDR-WGYAAGYPHAAGYPHDTHYLEGPPLDAYSIQGQHTVSPLDLAKLNQVARQQS 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+ N P G A++ T TT E IP + + G
Sbjct: 253 HFAMMHGGTGFAGIDS-------NSPEVKGYWASLDASTQTTHEFTIPNNLIGCIIGRQG 305
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 306 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 351
>gi|115471839|ref|NP_001059518.1| Os07g0439100 [Oryza sativa Japonica Group]
gi|38175703|dbj|BAC84296.2| unknown protein [Oryza sativa Japonica Group]
gi|50508539|dbj|BAD30838.1| unknown protein [Oryza sativa Japonica Group]
gi|113611054|dbj|BAF21432.1| Os07g0439100 [Oryza sativa Japonica Group]
Length = 233
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 106/262 (40%), Gaps = 38/262 (14%)
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP 112
M T +++ + P C S ++ ++Q+ G +V+DAL + +LR F ++
Sbjct: 1 MNNTTRTKMKILEETAVPACASQYELVLQITGEPMNVRDALSLVCEKLRNHCFSSEKTTY 60
Query: 113 NNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGM 172
NGH E+ +S S + D G S P + G
Sbjct: 61 GNGHVPSSAIDELTT---------SSQNEIDSVQNSISAFDLGCLGS-PQIQKPTIGCGT 110
Query: 173 DPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASS--GFTPRN 230
+ P N E+P +G + G + G D S+ +
Sbjct: 111 EINNPINE--------VEKPANG-------NGTGINNLNTGMQNENGIDVSNHGATSLEE 155
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
+ + G A +T T EV V G+N ++ + IR++SGA+V + P P ++G
Sbjct: 156 KKLLRGIKTATITRITYEVA--------VCGDNGNDFTMIREMSGADVTAHYPLPETSDG 207
Query: 291 VVMVSGTSDQMRAAQSLIHAFI 312
++++SGT D+ AQS + F+
Sbjct: 208 MIVISGTPDE---AQSALAMFL 226
>gi|410227970|gb|JAA11204.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 117/284 (41%), Gaps = 37/284 (13%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GG G D+SS P + +G A+ T TT E+ IP + + G +N
Sbjct: 253 ------GGTGFAGIDSSS---PEVKGYWAGLDAS--TQTTHELTIPNNLIGCIIGRQGAN 301
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 302 INEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|357146019|ref|XP_003573848.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 470
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/319 (22%), Positives = 118/319 (36%), Gaps = 66/319 (20%)
Query: 4 SPAQDAVMRVHSRIAEI-GFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
+PA DA +++ + EI G + ARLLV +Q L+G+ G ++ ++
Sbjct: 148 APAMDAAIKIFKHVNEIEGINASVTFSASAPEICSARLLVPKEQAAHLIGKQGIMIKSIQ 207
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
TG++IR+ KD + IV+++G +AL + LR+ +
Sbjct: 208 ETTGSTIRIIDKDDLLNYRMVDERIVEILGASLKALNALKSVLGLLRKFLV--------- 258
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
HS L F R N A + S D + P S G P
Sbjct: 259 DHSVLHLF---------ERKNQAIAHAQDISKENQVSNDYAL----PVSRDLLLSDGQSP 305
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVE 234
+ P + + + G DP D S + P E
Sbjct: 306 LSPKGNRYLSY----------------------------GRDPSVCDPYS--SQIRHPTE 335
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
S ++ T + IP + G N++HIR +SGA VV+ + E +V +
Sbjct: 336 S-----LIKKITQTMKIPLPQADEIIGVGGRNIAHIRSVSGAIVVLEETGDYLNEVLVTI 390
Query: 295 SGTSDQMRAAQSLIHAFIL 313
G+S Q+ A L+ +L
Sbjct: 391 QGSSSQVHTAHQLVQVILL 409
>gi|340726176|ref|XP_003401437.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus terrestris]
Length = 466
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 120/290 (41%), Gaps = 64/290 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V D P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASDMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 160 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP +SD + G P
Sbjct: 193 PVI-----LAGGQAYTIQGNYA------VPAHSDM-------GKLGSNPLAGLAALGLGG 234
Query: 208 --TPQGVGGGDPRGFDASSGFTPR----NRPVESGNHAAILTSTTIEVVIPQLYMAHVYG 261
TP GG +P A +G R NR +GN+ T E+ +P + + G
Sbjct: 235 LATPANTGGLNPAALAALAGSQLRTSNTNRQQPAGNNQ------THEMTVPNELIGCIIG 288
Query: 262 ENNSNLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
+ + ++ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 289 KGGTKIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 275 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 332
Query: 91 DALFHIT 97
A + I+
Sbjct: 333 LAQYLIS 339
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
>gi|224097170|ref|XP_002310862.1| predicted protein [Populus trichocarpa]
gi|222853765|gb|EEE91312.1| predicted protein [Populus trichocarpa]
Length = 245
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 3 HSPAQDAVMRVHSRIAE--------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
HSPAQ+A++ V +R E +G V A LL+ S ++ CL+GRGG + SEM
Sbjct: 141 HSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNKVYCLIGRGGRVDSEMI 200
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQV 82
TGA I++ DQ S +D +VQV
Sbjct: 201 ETTGADIQIMQGDQFFDLASKNDAVVQV 228
>gi|412992928|emb|CCO16461.1| predicted protein [Bathycoccus prasinos]
Length = 703
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 4 SPAQDAVMRVHSRI---AEIGFEPGQA------VVARLLVHSQQIGCLLGRGGHIVSEMR 54
+P+Q A++R+ I AE G A +V RLL+ S QI ++GR G+++ +R
Sbjct: 327 APSQIALLRIVETIVLDAERNTTIGAAEENNGHIVIRLLLPSSQIRNVIGRFGNVIERIR 386
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIG-NYHSVQDALFHITSRLR 101
+G+ +RV P + PRC +DE++Q+ + +V AL IT++LR
Sbjct: 387 VGSGSHVRVLPSSETPRCAKRNDEVLQISAESMENVASALAMITTQLR 434
>gi|147794489|emb|CAN67081.1| hypothetical protein VITISV_007074 [Vitis vinifera]
Length = 534
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 69/147 (46%), Gaps = 22/147 (14%)
Query: 5 PAQDAVMRVHSRIAEIGFE-------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PA D +++VH RI + G E PG V RLLV + Q G L+G+ G V ++ A+
Sbjct: 189 PAMDGLLKVHKRIVD-GLEGDSSHMPPGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEAS 247
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
+RV + P D +V+V+G V A+ I S LR+ F + R S
Sbjct: 248 NCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLRK--FLVDR-------S 298
Query: 118 YLPPFP---EMPPPPF--RPRHNPASP 139
+P F +M PP RP H P P
Sbjct: 299 VIPLFEMQMQMSNPPIEHRPPHQPWGP 325
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 51/97 (52%), Gaps = 8/97 (8%)
Query: 225 GFTPRNRPVESGNHA--------AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
G + R V G HA +++T T ++ IP Y V G +++S+IR+ SGA
Sbjct: 372 GISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGA 431
Query: 277 NVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
V + + + E V ++GT+ Q++AAQ LI A L
Sbjct: 432 TVTIQETRGVPGEMTVEINGTASQVQAAQQLIQALFL 468
>gi|460771|emb|CAA55016.1| hnRNP-E1 [Homo sapiens]
Length = 356
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 117/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P VG
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAVG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|388503270|gb|AFK39701.1| unknown [Medicago truncatula]
Length = 110
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 49/68 (72%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T+E+V+P + V G+ +NL++IR+ISGA V +++ K + V ++SGTS++ RAA
Sbjct: 40 STLEMVVPANAVGKVMGKGGANLANIRKISGATVEISESKSYRGDRVALISGTSEEKRAA 99
Query: 305 QSLIHAFI 312
++LI AFI
Sbjct: 100 ENLIQAFI 107
>gi|410355313|gb|JAA44260.1| poly(rC) binding protein 1 [Pan troglodytes]
Length = 356
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 117/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + ++ G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGYIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|328778258|ref|XP_391921.3| PREDICTED: poly(rC)-binding protein 3-like [Apis mellifera]
Length = 466
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 117/286 (40%), Gaps = 56/286 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V D P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASDMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 160 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP +SD + G P
Sbjct: 193 PVI-----LAGGQAYTIQGNYA------VPAHSDM-------GKLGSNPLAGLAALGLGG 234
Query: 208 --TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
TP GG +P A +G R AA + T E+ +P + + G+ +
Sbjct: 235 LATPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGT 292
Query: 266 NLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
++ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 293 KIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVSLAQYLI 338
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 275 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVS 332
Query: 91 DALFHIT 97
A + I+
Sbjct: 333 LAQYLIS 339
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
>gi|350405177|ref|XP_003487350.1| PREDICTED: poly(rC)-binding protein 3-like [Bombus impatiens]
Length = 466
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 117/286 (40%), Gaps = 56/286 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V D P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASDMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 160 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP +SD + G P
Sbjct: 193 PVI-----LAGGQAYTIQGNYA------VPAHSDM-------GKLGSNPLAGLAALGLGG 234
Query: 208 --TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
TP GG +P A +G R AA + T E+ +P + + G+ +
Sbjct: 235 LATPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGT 292
Query: 266 NLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
++ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 293 KIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 275 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 332
Query: 91 DALFHIT 97
A + I+
Sbjct: 333 LAQYLIS 339
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
>gi|414870925|tpg|DAA49482.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 170
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 81 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 140
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 141 QSLLQGFI 148
>gi|414870924|tpg|DAA49481.1| TPA: hypothetical protein ZEAMMB73_398324 [Zea mays]
Length = 169
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+TIE+ IP + + G NL+ IRQ+SGA + +++ G++E VV + GT DQ +AA
Sbjct: 80 STIELRIPNSSLGSIVGAGGVNLAEIRQVSGARLRLHEAHAGSSESVVEIQGTLDQAKAA 139
Query: 305 QSLIHAFI 312
QSL+ FI
Sbjct: 140 QSLLQGFI 147
>gi|440907813|gb|ELR57910.1| Poly(rC)-binding protein 1 [Bos grunniens mutus]
Length = 356
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
SN++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 SNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|296087899|emb|CBI35182.3| unnamed protein product [Vitis vinifera]
Length = 511
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 5 PAQDAVMRVHSRIAEIGFE-------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PA D +++VH RI + G E PG V RLLV + Q G L+G+ G V ++ A+
Sbjct: 178 PAMDGLLKVHKRIVD-GLEGDSSHMPPGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEAS 236
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--------IFPMKR 109
+RV + P D +V+V+G V A+ I S LR+ +F M+
Sbjct: 237 NCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLRKFLVDRSVIPLFEMQM 296
Query: 110 PGPNNGHSYLPPFPEMPP 127
N PP MPP
Sbjct: 297 QMSN------PPIEHMPP 308
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 225 GFTPRNRPVESGNHA--------AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
G + R V G HA +++T T ++ IP Y V G +++S+IR+ SGA
Sbjct: 361 GISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGA 420
Query: 277 NVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
V + + + E V ++GT+ Q++AAQ LI F+
Sbjct: 421 TVTIQETRGVPGEMTVEINGTASQVQAAQQLIQNFM 456
>gi|225463940|ref|XP_002269249.1| PREDICTED: poly(rC)-binding protein 3-like [Vitis vinifera]
Length = 442
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 63/138 (45%), Gaps = 22/138 (15%)
Query: 5 PAQDAVMRVHSRIAEIGFE-------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PA D +++VH RI + G E PG V RLLV + Q G L+G+ G V ++ A+
Sbjct: 109 PAMDGLLKVHKRIVD-GLEGDSSHMPPGGKVSTRLLVAASQAGSLIGKQGGTVKSIQEAS 167
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET--------IFPMKR 109
+RV + P D +V+V+G V A+ I S LR+ +F M+
Sbjct: 168 NCIVRVLGAEDLPIFALQDDRVVEVVGEPIGVHKAVELIASHLRKFLVDRSVIPLFEMQM 227
Query: 110 PGPNNGHSYLPPFPEMPP 127
N PP MPP
Sbjct: 228 QMSN------PPIEHMPP 239
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 225 GFTPRNRPVESGNHA--------AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
G + R V G HA +++T T ++ IP Y V G +++S+IR+ SGA
Sbjct: 292 GISAYGREVPMGGHAPSSAQPAPSMITQVTQQMQIPLSYADAVIGTAGASISYIRRASGA 351
Query: 277 NVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
V + + + E V ++GT+ Q++AAQ LI F+
Sbjct: 352 TVTIQETRGVPGEMTVEINGTASQVQAAQQLIQNFM 387
>gi|296189557|ref|XP_002742821.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Callithrix
jacchus]
Length = 375
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 74/287 (25%), Positives = 120/287 (41%), Gaps = 43/287 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R++TGA ++V D P + + + + G
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRKSTGAQVQV-AGDMLP---NSTERAITIAGVPQ 152
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGS-YPSPV 146
SV + I + ET+ P P P P + S + YP
Sbjct: 153 SVTKCVKQICLVMLETLS--HSPQGKVKTILYQPMPSRSPVTCAGGQDRCSDAAGYP--- 207
Query: 147 GPFHSMDRGMGPSQPFDHQAAFS-HGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
H+ GP P D A+S G + P N + ++ +
Sbjct: 208 ---HATHDLEGP--PLD---AYSIQGQHTISPLNLAK---------------LNQVARQQ 244
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTI--EVVIPQLYMAHVYGEN 263
S GG G D+SS P G A++ ST I E+ IP + + G
Sbjct: 245 SHFAMMHGGTGFAGIDSSS-------PEVKGYWASLDASTQITHELTIPNNLIGCIIGRQ 297
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI A
Sbjct: 298 GTNINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLIKA 344
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R+ +GA I++ G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRKESGARIKILE-------GNCPERIITLTGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIYKLEEDI 83
>gi|344283688|ref|XP_003413603.1| PREDICTED: poly(rC)-binding protein 1-like [Loxodonta africana]
Length = 438
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 180 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 235
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 236 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 288
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 289 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMLH------- 334
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 335 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 381
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A +
Sbjct: 382 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 429
>gi|397521888|ref|XP_003831016.1| PREDICTED: poly(rC)-binding protein 1 [Pan paniscus]
Length = 455
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 197 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 252
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 253 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 305
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 306 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 351
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 352 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 398
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A +
Sbjct: 399 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 446
>gi|297605767|ref|NP_001057572.2| Os06g0342500 [Oryza sativa Japonica Group]
gi|255677019|dbj|BAF19486.2| Os06g0342500 [Oryza sativa Japonica Group]
Length = 96
Score = 60.8 bits (146), Expect = 8e-07, Method: Composition-based stats.
Identities = 32/73 (43%), Positives = 47/73 (64%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
++T +T+EVVIP+ +A + S L+ I ++SGA V + D +P A E VV +SGT +Q
Sbjct: 15 LVTRSTLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQ 74
Query: 301 MRAAQSLIHAFIL 313
AQSL+ FIL
Sbjct: 75 ADKAQSLLQGFIL 87
>gi|79550843|ref|NP_178410.2| putative RNA-binding protein [Arabidopsis thaliana]
gi|45752620|gb|AAS76208.1| At2g03110 [Arabidopsis thaliana]
gi|46359791|gb|AAS88759.1| At2g03110 [Arabidopsis thaliana]
gi|330250570|gb|AEC05664.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 153
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/79 (44%), Positives = 49/79 (62%), Gaps = 4/79 (5%)
Query: 25 GQAVV-ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP--HDEIVQ 81
GQ VV R+LV S QIG L+G+GG I+ +R T A IRV D P C HDE++Q
Sbjct: 69 GQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALALSHDELLQ 127
Query: 82 VIGNYHSVQDALFHITSRL 100
+IG+ +V++AL+ + L
Sbjct: 128 IIGDPSAVREALYQVAFLL 146
>gi|224097168|ref|XP_002310861.1| predicted protein [Populus trichocarpa]
gi|222853764|gb|EEE91311.1| predicted protein [Populus trichocarpa]
Length = 404
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Query: 3 HSPAQDAVMRVHSRIAE--------IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
HSPAQ+A++ V +R E +G V A LL+ S ++ CL+ RGG I SEM
Sbjct: 315 HSPAQNALLLVFARSIEHDIERARSLGLIEEITVTATLLLPSNRVSCLIERGGRIDSEMI 374
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQV 82
TGA I++ DQ C S +D ++QV
Sbjct: 375 ETTGADIQILQGDQFFYCASNNDVVLQV 402
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 60/104 (57%), Gaps = 7/104 (6%)
Query: 4 SPAQDAVMRVHSRIAEI-GFEPGQAV--VARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
S AQ+AV+RV R+ E+ + G LL ++ QIG ++GR G + M+RA+GA
Sbjct: 96 SAAQEAVVRVLERMWEVDAVKDGGDCEGYCGLLANTSQIGAVVGREGRNIKRMKRASGAH 155
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYH-SVQDALFHITSRLRET 103
I + P AP C D+++Q+ G+ +V+ A+ ITS L++
Sbjct: 156 IWILP---APLCALKEDQLIQITGSSTVAVKKAVIAITSCLQDC 196
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 21/115 (18%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
I +PGQ V R++ H+ +IG L+G G ++S++R TG + ++A + GS H I
Sbjct: 19 IELQPGQ-VAFRVVCHASKIGALIGHSGSVISQIRLETGCLVHC---EEAVK-GSEHRAI 73
Query: 80 VQ----------VIGNYHSV-----QDALFHITSRLRETIFPMKRPGPNNGHSYL 119
V +G +V Q+A+ + R+ E + +K G G+ L
Sbjct: 74 VVAGSASPERKIAVGEDETVEVSAAQEAVVRVLERMWE-VDAVKDGGDCEGYCGL 127
>gi|149036630|gb|EDL91248.1| similar to Pol(yrC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)
(predicted) [Rattus norvegicus]
Length = 337
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 79 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 134
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 135 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 187
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 188 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 233
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 234 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 280
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 281 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 326
>gi|392347468|ref|XP_003749842.1| PREDICTED: poly(rC)-binding protein 1 [Rattus norvegicus]
Length = 516
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 117/288 (40%), Gaps = 41/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 258 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 313
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 314 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 366
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 367 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 412
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 413 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 459
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A +
Sbjct: 460 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARL 507
>gi|392340090|ref|XP_002726454.2| PREDICTED: poly(rC)-binding protein 1, partial [Rattus norvegicus]
Length = 365
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 162
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 163 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 215
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 216 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 261
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 262 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 308
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 309 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 354
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 15 SRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGS 74
+R+ E G + RLL+H +++G ++G+ G V +R +GA I + G+
Sbjct: 12 NRVTESGLNV--TLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GN 62
Query: 75 PHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+ I+ + G +++ A I +L E I
Sbjct: 63 CPERIITLTGPTNAIFKAFAMIIDKLEEDI 92
>gi|383862493|ref|XP_003706718.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Megachile
rotundata]
Length = 466
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 117/286 (40%), Gaps = 56/286 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 160 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP +SD + G P
Sbjct: 193 PLI-----LAGGQAYTIQGNYA------VPAHSDM-------GKLGSNPLAGLAALGLGG 234
Query: 208 --TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
TP GG +P A +G R AA + T E+ +P + + G+ +
Sbjct: 235 LATPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGT 292
Query: 266 NLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
++ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 293 KIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 338
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 275 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 332
Query: 91 DALFHIT 97
A + I+
Sbjct: 333 LAQYLIS 339
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
>gi|307199010|gb|EFN79734.1| Poly(rC)-binding protein 3 [Harpegnathos saltator]
Length = 469
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/287 (24%), Positives = 118/287 (41%), Gaps = 56/287 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 106 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 161
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 162 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 194
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP +SD + G P
Sbjct: 195 PVI-----LAGGQAYTIQGNYA------VPAHSDM-------GKLGSNPLASLAALGLGG 236
Query: 208 --TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
TP GG +P A +G R AA + T E+ +P + + G+ +
Sbjct: 237 LATPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGT 294
Query: 266 NLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQISGA + +++ + GAT+ + ++G D + AQ LI+
Sbjct: 295 KIAEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLIN 341
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 10 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 62
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 63 TGPTNSIFKAFTLICKKFEE 82
>gi|417410101|gb|JAA51528.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 365
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 107 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 162
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 163 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 215
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 216 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 261
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 262 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 308
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 309 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 354
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +
Sbjct: 23 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTN 75
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 76 AIFKAFAMIIDKLEEDI 92
>gi|351714348|gb|EHB17267.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 152
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 153 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 205
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 206 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 251
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 252 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 298
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 299 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 344
>gi|410922719|ref|XP_003974830.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Takifugu
rubripes]
Length = 434
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 77/322 (23%), Positives = 124/322 (38%), Gaps = 57/322 (17%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T SI++F + C D +V V G V
Sbjct: 124 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQE----CCPQSTDRVVLVGGKMERVV 179
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHS--YLPPFPEMP------PPPFRPRHNPASP-GS 141
+ + +T+ + P G + Y P F + F R P G
Sbjct: 180 ECI--------KTMLELIADAPIKGRAQPYDPNFYDETYEYGGFTVMFEERVGGRRPMGG 231
Query: 142 YPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP 201
+PS DRG F+ ++ G PM D P P H R
Sbjct: 232 FPSRGNRSSGGDRG------FERMSSSRGGRGPMSSSRRDYDDSPRRGPPPPHSSRVSRG 285
Query: 202 PSPRSWTPQGVG--GGDPRGFDASSGFTPRN-----RP----------VESGN-----HA 239
S G GGD R +D+ G R+ RP ++G+ H+
Sbjct: 286 NSRGRNMSIGHSHRGGDDRYYDSYRGSDERSNDRRGRPDRYSDSMSGGYDNGSSWDNYHS 345
Query: 240 AILTS--------TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
S T +V IP+ + G+ + IR SGA + +++P G+ + +
Sbjct: 346 GGRCSYNDIGGPVVTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKIDEPLEGSEDRI 405
Query: 292 VMVSGTSDQMRAAQSLIHAFIL 313
+ ++GT DQ++ AQ L+ + +L
Sbjct: 406 ITITGTQDQIQNAQFLLQSSVL 427
>gi|90086375|dbj|BAE91740.1| unnamed protein product [Macaca fascicularis]
Length = 283
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 25 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 80
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 81 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 133
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 134 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 179
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 180 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 226
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 227 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 272
>gi|6754994|ref|NP_035995.1| poly(rC)-binding protein 1 [Mus musculus]
gi|62751650|ref|NP_001015565.1| poly(rC)-binding protein 1 [Bos taurus]
gi|126723096|ref|NP_001075593.1| poly(rC)-binding protein 1 [Oryctolagus cuniculus]
gi|222352151|ref|NP_006187.2| poly(rC)-binding protein 1 [Homo sapiens]
gi|379642963|ref|NP_001243850.1| poly(rC)-binding protein 1 [Equus caballus]
gi|114577924|ref|XP_515530.2| PREDICTED: poly(rC)-binding protein 1 isoform 3 [Pan troglodytes]
gi|296223628|ref|XP_002757702.1| PREDICTED: poly(rC)-binding protein 1-like [Callithrix jacchus]
gi|297667414|ref|XP_002811975.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Pongo abelii]
gi|301758216|ref|XP_002914950.1| PREDICTED: poly(rC)-binding protein 1-like [Ailuropoda melanoleuca]
gi|332226765|ref|XP_003262561.1| PREDICTED: poly(rC)-binding protein 1 [Nomascus leucogenys]
gi|348566575|ref|XP_003469077.1| PREDICTED: poly(rC)-binding protein 1-like [Cavia porcellus]
gi|354491739|ref|XP_003508012.1| PREDICTED: poly(rC)-binding protein 1-like [Cricetulus griseus]
gi|395731716|ref|XP_003775951.1| PREDICTED: poly(rC)-binding protein 1 isoform 2 [Pongo abelii]
gi|395841306|ref|XP_003793486.1| PREDICTED: poly(rC)-binding protein 1 [Otolemur garnettii]
gi|402891162|ref|XP_003908824.1| PREDICTED: poly(rC)-binding protein 1 [Papio anubis]
gi|410954989|ref|XP_003984141.1| PREDICTED: poly(rC)-binding protein 1 [Felis catus]
gi|426223390|ref|XP_004005858.1| PREDICTED: poly(rC)-binding protein 1 [Ovis aries]
gi|426335835|ref|XP_004029412.1| PREDICTED: poly(rC)-binding protein 1 [Gorilla gorilla gorilla]
gi|12230408|sp|O19048.1|PCBP1_RABIT RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42559420|sp|P60335.1|PCBP1_MOUSE RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1
gi|42560548|sp|Q15365.2|PCBP1_HUMAN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E1; Short=hnRNP E1; AltName: Full=Nucleic acid-binding
protein SUB2.3
gi|75040221|sp|Q5E9A3.1|PCBP1_BOVIN RecName: Full=Poly(rC)-binding protein 1; AltName: Full=Alpha-CP1
gi|2134737|pir||S58529 alpha-complex protein 1 - human
gi|5805273|gb|AAD51920.1|AF139894_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|5805275|gb|AAD51921.1|AF139895_1 RNA-binding protein alpha-CP1 [Mus musculus]
gi|1215671|gb|AAA91317.1| alpha-CP1 [Homo sapiens]
gi|2644966|emb|CAA05814.1| hnRNP-E1 protein [Oryctolagus cuniculus]
gi|13435897|gb|AAH04793.1| Poly(rC) binding protein 1 [Mus musculus]
gi|24980783|gb|AAH39742.1| Poly(rC) binding protein 1 [Homo sapiens]
gi|47124405|gb|AAH69915.1| Poly(rC) binding protein 1 [Mus musculus]
gi|59858399|gb|AAX09034.1| poly(rC) binding protein 1 [Bos taurus]
gi|62702265|gb|AAX93191.1| unknown [Homo sapiens]
gi|119620240|gb|EAW99834.1| poly(rC) binding protein 1 [Homo sapiens]
gi|148666767|gb|EDK99183.1| mCG130511 [Mus musculus]
gi|189054893|dbj|BAG36897.1| unnamed protein product [Homo sapiens]
gi|208968661|dbj|BAG74169.1| poly(rC) binding protein 1 [synthetic construct]
gi|281346699|gb|EFB22283.1| hypothetical protein PANDA_002891 [Ailuropoda melanoleuca]
gi|296482414|tpg|DAA24529.1| TPA: poly(rC)-binding protein 1 [Bos taurus]
gi|312151908|gb|ADQ32466.1| poly(rC) binding protein 1 [synthetic construct]
gi|344250809|gb|EGW06913.1| Poly(rC)-binding protein 1 [Cricetulus griseus]
gi|355565760|gb|EHH22189.1| hypothetical protein EGK_05412 [Macaca mulatta]
gi|355751386|gb|EHH55641.1| hypothetical protein EGM_04885 [Macaca fascicularis]
gi|380813262|gb|AFE78505.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|380813264|gb|AFE78506.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|383418769|gb|AFH32598.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384940310|gb|AFI33760.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|384947378|gb|AFI37294.1| poly(rC)-binding protein 1 [Macaca mulatta]
gi|410262902|gb|JAA19417.1| poly(rC) binding protein 1 [Pan troglodytes]
gi|431912608|gb|ELK14626.1| Poly(rC)-binding protein 1 [Pteropus alecto]
gi|444723406|gb|ELW64063.1| Poly(rC)-binding protein 1 [Tupaia chinensis]
Length = 356
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|351712813|gb|EHB15732.1| Poly(rC)-binding protein 1 [Heterocephalus glaber]
Length = 355
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 97 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 152
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 153 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 205
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 206 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 251
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 252 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 298
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ + ++G++ + AQ LI+A
Sbjct: 299 ANINEIRQMSGAQIKIANPVEGSSGRQITITGSAASISLAQYLINA 344
>gi|57093423|ref|XP_538537.1| PREDICTED: poly(rC)-binding protein 1 isoform 1 [Canis lupus
familiaris]
Length = 356
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCGDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|124359391|gb|ABN05855.1| KH, type 1 [Medicago truncatula]
Length = 222
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 4 SPAQDAVMRVHSRIAEI-----GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
S AQ+A++RV RI E+ G E G + V RL+ S Q G ++G+GG +V ++++ T
Sbjct: 122 SKAQEALLRVFDRILEVAAEMEGIELGDRTVSCRLVADSAQAGSVIGKGGKVVEKIKKDT 181
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHIT 97
G I V KD P C S DE+++ + A+ I
Sbjct: 182 GCKIWVC-KDNLPACISSPDEVIECSASRSMFGSAVTRIV 220
>gi|432110248|gb|ELK34019.1| Poly(rC)-binding protein 3 [Myotis davidii]
Length = 347
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 132/331 (39%), Gaps = 55/331 (16%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 42 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 93
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFR 131
G+ + IV + G ++ A I + E I N S P + PP R
Sbjct: 94 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII--------NSMSNSPATSK-PPVTLR 143
Query: 132 PRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGS-- 189
+ GS +G S + + S Q A M+P +++R G+
Sbjct: 144 LVVPASQCGSL---IGKGGSKIKEIRESTGAQVQVA-----GDMLPNSTERAVTISGTPD 195
Query: 190 --------------ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGF---------DASSGF 226
E P G T P P S TP GG D S F
Sbjct: 196 AIIQCVKQICVVMLESPPKGATIPYRPKPAS-TPVIFAGGQAYTIQGQYAIPHPDVSFHF 254
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
P S A+ ST E+ IP + + G + ++ IRQ+SGA + + + G
Sbjct: 255 V--CLPFSSCLDASPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEG 311
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
++E + ++GT + AQ LI+A + VT
Sbjct: 312 SSERQITITGTPANISLAQYLINARLTSEVT 342
>gi|417399455|gb|JAA46731.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 351
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 125/290 (43%), Gaps = 54/290 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 193 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 230
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR--PVESGN--HAAIL---TSTTIEVVIPQLYMAHVY 260
T QG + P+ GN +A L T TT E+ IP + +
Sbjct: 231 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSASLDASTQTTHELTIPNNLIGCII 290
Query: 261 GENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
G +N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 291 GRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 340
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|359479585|ref|XP_002275698.2| PREDICTED: uncharacterized protein LOC100266515 [Vitis vinifera]
Length = 858
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 4 SPAQDAVMRVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+PA D ++RVH I ++ + G V RLLV + Q G L+G+ G + ++ A+
Sbjct: 100 APAIDGLLRVHKCIMDVESDVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQEASNC 159
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE--------TIFPMKRPG 111
+RV ++ P +D +V++ G SV A+ I S LR+ +F M+
Sbjct: 160 IVRVLGEN-LPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDRSVIKVFEMEMQK 218
Query: 112 PNN-GHSYLPPFPEMPPPPFRPRHNPASPGSYPS 144
PN G+ +PP P P + PG P+
Sbjct: 219 PNTQGNENMPPQQSWDPSQVFPINTGGEPGFVPN 252
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 226 FTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
T R++ E G+ T + +P Y V G + N+S++R+ SGA + + + K
Sbjct: 719 LTWRSKKAECGSKV-----ITQYMQVPLSYADAVIGASGVNISYVRRTSGATIAIEETKG 773
Query: 286 GATEGVVMVSGTSDQMRAAQSLIHAFILCGVTS 318
E V ++G+ Q++ AQ LI F+ +S
Sbjct: 774 VPGEMTVEINGSVSQVQTAQQLIQNFMAEAASS 806
>gi|356572245|ref|XP_003554280.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 528
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 53/108 (49%), Gaps = 7/108 (6%)
Query: 5 PAQDAVMRVHSRI-------AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
PA D ++RVH ++ A+ G++VV RLLV Q G L+G+ G + ++ +
Sbjct: 186 PAVDGLLRVHKQVINVDRDLADSALAAGRSVVTRLLVADTQAGSLIGKQGSTIKSIQDGS 245
Query: 58 GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G +IRV + P D IV++ G V A+ I LR+ +
Sbjct: 246 GCTIRVLGSENLPIFALRDDSIVEIQGESAGVHKAVELIAVHLRKFLV 293
>gi|390347463|ref|XP_792931.3| PREDICTED: poly(rC)-binding protein 3-like [Strongylocentrotus
purpuratus]
Length = 369
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 53/288 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + ++R T ASI V + P S + V + G
Sbjct: 18 VSLRLIVPTSQCGSLIGKGGSKIKDIRETTSASITV-ASEMLP---SSTERAVTISGTPE 73
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ A++ + + E+ P G + P+RP+ PA+ +P+
Sbjct: 74 AITKAIYQVCCVMLES--------PPKGATI----------PYRPK--PAT-----API- 107
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
F M QA HG + P+ ++
Sbjct: 108 IFAGGSVSMTEQHLHQQQAYAVHGNYALAQPDLTKLHHQLALHH--------------QQ 153
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR---PVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
TP + G P A + F + P G +TT E+ IP + V G
Sbjct: 154 TPYAIPGQTPFSPAALTQFAAQTAAPPPQVQGQ------ATTQEITIPNHLIGCVIGRGG 207
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + IRQ+SGAN+ + + + G+T+ V ++G+ + + AQ LI+ +
Sbjct: 208 TKIQEIRQMSGANIKIANSQEGSTDRSVTITGSPESVAVAQCLINTSL 255
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
GQA + + + IGC++GRGG + E+R+ +GA+I++ + GS D V + G
Sbjct: 185 GQATTQEITIPNHLIGCVIGRGGTKIQEIRQMSGANIKIANSQE----GS-TDRSVTITG 239
Query: 85 NYHSVQDALFHITSRLR 101
+ SV A I + L
Sbjct: 240 SPESVAVAQCLINTSLE 256
>gi|384947380|gb|AFI37295.1| poly(rC)-binding protein 1 [Macaca mulatta]
Length = 358
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/283 (24%), Positives = 116/283 (40%), Gaps = 36/283 (12%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GG G D+SS P + +G A+ T T+ E+ IP + + G +
Sbjct: 253 ------GGTGFAGIDSSS---PEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 302
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 303 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 345
>gi|417410186|gb|JAA51570.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 376
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 128/306 (41%), Gaps = 73/306 (23%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 165
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 166 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 204
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 205 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 242
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + + A+ T
Sbjct: 243 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWASLDAS--TQ 299
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ + A
Sbjct: 300 TTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLA 359
Query: 305 QSLIHA 310
Q LI+A
Sbjct: 360 QYLINA 365
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 78
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 79 AIFKAFAMIIDKLEEDI 95
>gi|116784616|gb|ABK23409.1| unknown [Picea sitchensis]
Length = 407
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + E+R +GA+I++ P++ +P C S D +VQ+ G
Sbjct: 190 RLLIAGSQAGSLIGASGKTIKEIRNDSGATIKILPQNLSPICASASETDRLVQISGEVSQ 249
Query: 89 VQDALFHITSRLRE 102
V AL HI LRE
Sbjct: 250 VLKALDHIGVTLRE 263
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
L T+E+ IP V G+ N+S IR +SGA V V K GAT + GT+ Q+
Sbjct: 326 LPKVTVEMKIPSSVAGGVIGKRGDNISQIRSLSGAIVKVIGEKDGATR-TIFFEGTAHQV 384
Query: 302 RAAQSLIHAFI 312
AQ+L++ I
Sbjct: 385 ATAQNLVNNHI 395
>gi|356528013|ref|XP_003532600.1| PREDICTED: poly(rC)-binding protein 3-like [Glycine max]
Length = 167
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 51/82 (62%), Gaps = 4/82 (4%)
Query: 4 SPAQDAVMRVHSRIAEI--GFEPGQAVVA-RLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
S AQ+A+++V R+ ++ G E G VV+ RLL + Q+G ++G+ G +V ++R TG
Sbjct: 86 STAQEALLKVFDRVLDVAAGTEVGDLVVSCRLLAETSQVGAVIGKAGKVVEKIRMDTGCK 145
Query: 61 IRVFPKDQAPRCGSPHDEIVQV 82
IRV + P +P DEIV+V
Sbjct: 146 IRVL-NEGLPAGTAPSDEIVEV 166
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF--PKDQAPRCGSPHDEIVQVIGN 85
V RLL H+ ++G ++G+ G ++ ++ ATGA IR+ P D R V G
Sbjct: 25 VTFRLLCHASRVGAIIGKSGVLIKSLQEATGAKIRIVDAPPDSPDRVILVSAPSVTEDGE 84
Query: 86 YHSVQDALFHITSRLRET 103
+ Q+AL + R+ +
Sbjct: 85 LSTAQEALLKVFDRVLDV 102
>gi|311252459|ref|XP_003125105.1| PREDICTED: poly(rC)-binding protein 1-like [Sus scrofa]
Length = 356
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 123/287 (42%), Gaps = 43/287 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ P + P++P PAS SPV
Sbjct: 154 SVTECVKQICLVMLETLSQ-------------SPQGRVMTIPYQPM--PAS-----SPVI 193
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPM--VPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
DR A + H + P ++ I + + P ++ +
Sbjct: 194 CAGGQDR-------CSDAAGYPHATHDLEGTPLDAYSIQGQH-TISPLDLAKLNQVARQQ 245
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGEN 263
S GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 246 SHFAMMHGGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQ 298
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 299 GANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
>gi|147807331|emb|CAN73002.1| hypothetical protein VITISV_044056 [Vitis vinifera]
Length = 1121
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 14/154 (9%)
Query: 4 SPAQDAVMRVHSRIAEIGFE----PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+PA D ++RVH I ++ + G V RLLV + Q G L+G+ G + ++ A+
Sbjct: 100 APAIDGLLRVHKCIMDVESDVPSAAGVMVSTRLLVVAAQAGSLIGKQGATIKSIQEASNC 159
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE--------TIFPMKRPG 111
+RV ++ P +D +V++ G SV A+ I S LR+ +F M+
Sbjct: 160 IVRVLGEN-LPLFALQNDTVVEIQGEPASVHKAVELIASNLRKFLVDRSVIKVFEMEMQK 218
Query: 112 PNN-GHSYLPPFPEMPPPPFRPRHNPASPGSYPS 144
PN G+ +PP P P + PG P+
Sbjct: 219 PNTQGNENMPPQQSWDPSQVFPINTGGEPGFVPN 252
>gi|14141168|ref|NP_005007.2| poly(rC)-binding protein 2 isoform a [Homo sapiens]
gi|47940610|gb|AAH71942.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|119617115|gb|EAW96709.1| poly(rC) binding protein 2, isoform CRA_d [Homo sapiens]
Length = 366
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 193 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 230
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 231 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWAGLDASAQT- 288
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 289 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 348
Query: 305 QSLIH 309
Q LI+
Sbjct: 349 QYLIN 353
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|321455064|gb|EFX66209.1| hypothetical protein DAPPUDRAFT_332423 [Daphnia pulex]
Length = 384
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
ARLLVH QIGC++GRGG V E+R +TG I V+ + C D IVQ++G
Sbjct: 117 ARLLVHQSQIGCIIGRGGAKVKELRESTGTRITVY----SVCCPRSTDRIVQILGKPSDC 172
Query: 90 QDALFHITSRLRET 103
+ + I + ++E+
Sbjct: 173 GECIKQIIALVKES 186
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+ T +V IP+ + G+ + + IR SGA++ +++P+PG+TE ++ +SG+S Q+
Sbjct: 306 TETTQVSIPKDLAGAIIGKGGARIRKIRGDSGASITIDEPRPGSTERIITISGSSHQIWK 365
Query: 304 AQSLIHAFI 312
AQ L+ +
Sbjct: 366 AQYLLQQSV 374
>gi|307136423|gb|ADN34230.1| hypothetical protein [Cucumis melo subsp. melo]
Length = 331
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GASI + +Q P C S H D +VQ+ G+ +
Sbjct: 165 RLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILA 224
Query: 89 VQDALFHITSRLRET 103
V AL I ++LR+T
Sbjct: 225 VLKALEEIGNQLRKT 239
>gi|348528027|ref|XP_003451520.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 429
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 78/317 (24%), Positives = 125/317 (39%), Gaps = 61/317 (19%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK------DQAPRCGSPHDEIVQVI- 83
RLL+H G ++G G + E+R T +I++F + D+ G + +V+ I
Sbjct: 125 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLVGGKPERVVECIK 184
Query: 84 --------------------GNYHSVQD-----ALFHITSRLRETIFPMKRPGPNNGHSY 118
Y D LF R FP++ G G
Sbjct: 185 VILELVSEAPIKGRAQPYDPNFYDETYDYGGFTMLFEERGRRPIGGFPIRVRG---GFER 241
Query: 119 LPPFP-EMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVP 177
+PP P PP R ++ SP P P + RG G S+ +
Sbjct: 242 MPPVRGSRPMPPSRRDYDDMSPRRGPPP-----PLSRGRGGSRARNLPLPPPP----PPR 292
Query: 178 PNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQ--GVGGGDPRGFDASSG---FTPRNRP 232
DR F +GS HG DRP R + + GG G+D SS F R
Sbjct: 293 GGGDR--FSHGSY---HGSMDDRPSDRRGRGDRYDSMSGG---GYDNSSSWDHFQSGGRG 344
Query: 233 VESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
S ++T+ +V IP+ + G+ + IR SGA++ +++P G+ + ++
Sbjct: 345 SYSDIGGPVITT---QVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRII 401
Query: 293 MVSGTSDQMRAAQSLIH 309
++GT DQ++ AQ L+
Sbjct: 402 TITGTQDQIQNAQYLLQ 418
Score = 37.4 bits (85), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 351 GPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 405
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +R+
Sbjct: 406 TQDQIQNAQYLLQNSVRQ 423
>gi|125558153|gb|EAZ03689.1| hypothetical protein OsI_25823 [Oryza sativa Indica Group]
Length = 610
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 130/321 (40%), Gaps = 45/321 (14%)
Query: 21 GFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGASI-----------RVFPK 66
G E + V+ RLL G L+G+ G ++ + +GAS+ R
Sbjct: 299 GIEQTECVMQFSFRLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITV 358
Query: 67 DQAPRCGSPHDEI----------VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
+ G + +Q+ G +V+DAL + +LR F ++ +NGH
Sbjct: 359 SALEKPGQKFSMVENAVLRIFDRMQITGEPMNVRDALSLVCEKLRNHCFSSEKTTYSNGH 418
Query: 117 SYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFS-HGMDPM 175
E+ + N +S G Y + G +D + ++ Q + S + +
Sbjct: 419 VPSSAIDELTTS---SQVNISSTGQYSA--GNLSRVDHRLSQNEIDSVQNSISAFDLGCL 473
Query: 176 VPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGG--DPRGFDASS--GFTPRNR 231
P + G+E ++P + + G + G D S+ + +
Sbjct: 474 GSPQIQKPTIGCGTEINNPINEVEKPANGNGTGINNLNTGMQNENGIDVSNHGATSLEEK 533
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
+ G A +T T EV V G+N ++ + IR++SGA+V + P P ++G+
Sbjct: 534 KLLRGIKTATITRITYEVA--------VCGDNGNDFTMIREMSGADVTAHYPLPETSDGM 585
Query: 292 VMVSGTSDQMRAAQSLIHAFI 312
+++SGT D+ AQS + F+
Sbjct: 586 IVISGTPDE---AQSALAMFL 603
>gi|417410200|gb|JAA51577.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 378
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 75/305 (24%), Positives = 128/305 (41%), Gaps = 72/305 (23%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 165
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 166 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 204
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 205 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 242
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 243 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWAGLDASAQT- 300
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 301 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 360
Query: 305 QSLIH 309
Q LI+
Sbjct: 361 QYLIN 365
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 78
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 79 AIFKAFAMIIDKLEEDI 95
>gi|432873594|ref|XP_004072294.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Oryzias
latipes]
Length = 433
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 123/312 (39%), Gaps = 46/312 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T SI++F + C D +V V G V
Sbjct: 124 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQE----CCPQSTDRVVLVGGKSERVV 179
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLPPFPEMPPPPFRPRHNPASP-GSYPSPVGP 148
+ + + + E P+K R P + + Y + F R GS+P G
Sbjct: 180 ECVKTMLELISEA--PIKGRTQPYDPNFYDETYEYGGFTMFEERGGGRRLMGSFPMR-GS 236
Query: 149 FHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWT 208
S DRG +D + G P+ P D P + PS RS
Sbjct: 237 RSSGDRG------YDRMPSSRVGRGPLPPSRRDYDDISPRRGPPPPHHSRVVRPSGRSRN 290
Query: 209 -PQGV--GGGDPRGFDASSGFTPRN-----RPVESGNHAAILTST--------------- 245
P G GGD R +D+ G R+ RP G++ +
Sbjct: 291 MPMGHPHRGGDDRYYDSYRGSDERSNDRRSRPDRYGDNMSGGYDNSSSWDSYQSGGRGSY 350
Query: 246 --------TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT
Sbjct: 351 SDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT 410
Query: 298 SDQMRAAQSLIH 309
DQ++ AQ L+
Sbjct: 411 QDQIQNAQYLLQ 422
>gi|291237680|ref|XP_002738761.1| PREDICTED: poly(rC) binding protein 2-like [Saccoglossus
kowalevskii]
Length = 409
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 107/288 (37%), Gaps = 73/288 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R TGAS++V + V + G
Sbjct: 102 VTLRLVVPASQCGSLIGKGGSKIKEIRENTGASVQV----AGDMLHQSTERAVTISGTPE 157
Query: 88 SVQDALFHITSRLRET-----IFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSY 142
++ ++ I + E+ P RP P N + P + A G+Y
Sbjct: 158 AITKCVYQICCVMLESPPKGATIPY-RPKPTNATATHPAY--------------AVHGNY 202
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
P F + H H PF PG P
Sbjct: 203 AVPYPDFMKL-----------HHLTMQH------------TPF-----LPGQTP------ 228
Query: 203 SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGE 262
+TP + G AS+G A T E++IP + V G
Sbjct: 229 ----FTPTALNMGYGVANAASAG-----------TQVATTGQQTYEIMIPNDLIGCVIGR 273
Query: 263 NNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ ++ IRQISGA + + + + G+ + V +SGT + + A LI++
Sbjct: 274 GGAKINEIRQISGATIKIANSQEGSNDRSVTISGTVEAINLAHFLINS 321
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + RL++ +++G ++G+GG + + R +GA I + A R IV V
Sbjct: 15 PAVTLTIRLIMQGKEVGSIIGKGGETIKKFREQSGARINISDSSCAER-------IVTVT 67
Query: 84 GNYHSVQDALFHITSRLRETI 104
G+ ++ +A IT + E +
Sbjct: 68 GSTEAINNAFEMITKKFEEDV 88
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+++ + IGC++GRGG ++E+R+ +GA+I++ + +D V + G ++
Sbjct: 259 EIMIPNDLIGCVIGRGGAKINEIRQISGATIKIANSQEG-----SNDRSVTISGTVEAIN 313
Query: 91 DALFHITSRLR 101
A F I S L
Sbjct: 314 LAHFLINSSLE 324
>gi|189234912|ref|XP_969611.2| PREDICTED: similar to AGAP004942-PA [Tribolium castaneum]
Length = 446
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 68/289 (23%), Positives = 118/289 (40%), Gaps = 62/289 (21%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 100 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTGE 155
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + + E+ P G + P+RP+ P G
Sbjct: 156 AITQCIYHICTVMLES--------PPKGATI----------PYRPK---------PQVGG 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q + Q ++ VP ++D G P
Sbjct: 189 PVI-----LAGGQAYTIQGNYA------VPAHTDMSAL-------GKSPLAGLAALGLGG 230
Query: 208 T-PQGVGGGDPRGFDASSGF---TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
P GG +P A +G T +R ++ N T E+ +P + + G+
Sbjct: 231 LAPTNTGGLNPAALAALAGSQLRTSNSRNQQNSNQQ------THEMTVPNELIGCIIGKG 284
Query: 264 NSNLSHIRQISGANVVV---NDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ ++ IRQISGA + + +D + G T+ + +SG D + AQ LI+
Sbjct: 285 GTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVALAQYLIN 333
>gi|432931637|ref|XP_004081712.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Oryzias
latipes]
Length = 321
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 125/327 (38%), Gaps = 63/327 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + IV + G
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GNCPERIVTITGPTD 68
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ A I + E I N S P + PP R + GS +G
Sbjct: 69 TIFKAFAMIAYKFEEDII--------NSMSNSPATSK-PPVTLRLVVPASQCGSL---IG 116
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGS----------------ER 191
S + M S Q A M+P +++R G+ E
Sbjct: 117 KGGSKIKEMRESTGAQVQVA-----GDMLPNSTERAVTISGTPEAIIQCVKQICVVMLES 171
Query: 192 PGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG-------------------FTP--RN 230
P G T P P S TP GG FTP +
Sbjct: 172 PPKGATIPYRPKPAS-TPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQT 230
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
P G AA ST E+ IP + + G + ++ IRQ+SGA + + + G++E
Sbjct: 231 TPAFPGLDAAPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSER 289
Query: 291 VVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++GT + AQ LI+A + VT
Sbjct: 290 QITITGTPANISLAQYLINARLTSEVT 316
>gi|222636947|gb|EEE67079.1| hypothetical protein OsJ_24052 [Oryza sativa Japonica Group]
Length = 544
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 129/321 (40%), Gaps = 45/321 (14%)
Query: 21 GFEPGQAVVA---RLLVHSQQIGCLLGRGGHIVSEMRRATGASI-----------RVFPK 66
G E + V+ RLL G L+G+ G ++ + +GAS+ R
Sbjct: 233 GIEQTECVMQFSFRLLCPVTLAGGLIGKNGMVIKAIEVNSGASVDVGGPVHRCMERAITV 292
Query: 67 DQAPRCGSPHDEI----------VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGH 116
+ G + +Q+ G +V+DAL + +LR F ++ NGH
Sbjct: 293 SALEKPGQKFSMVENAVLRIFDRMQITGEPMNVRDALSLVCEKLRNHCFSSEKTTYGNGH 352
Query: 117 SYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFS-HGMDPM 175
P + + N +S G Y + G +D + ++ Q + S + +
Sbjct: 353 ---VPSSAIDELTTSSQVNISSTGQYSA--GNLSRVDHRLSQNEIDSVQNSISAFDLGCL 407
Query: 176 VPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGG--DPRGFDASS--GFTPRNR 231
P + G+E ++P + + G + G D S+ + +
Sbjct: 408 GSPQIQKPTIGCGTEINNPINEVEKPANGNGTGINNLNTGMQNENGIDVSNHGATSLEEK 467
Query: 232 PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGV 291
+ G A +T T EV V G+N ++ + IR++SGA+V + P P ++G+
Sbjct: 468 KLLRGIKTATITRITYEVA--------VCGDNGNDFTMIREMSGADVTAHYPLPETSDGM 519
Query: 292 VMVSGTSDQMRAAQSLIHAFI 312
+++SGT D+ AQS + F+
Sbjct: 520 IVISGTPDE---AQSALAMFL 537
>gi|417399108|gb|JAA46584.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 333
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/284 (23%), Positives = 109/284 (38%), Gaps = 60/284 (21%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + ET+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLETL----SQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 208
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 209 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 232
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + + A+ T TT E+ IP + + G +N
Sbjct: 233 ------------GFSGIESSSPEVKGYWASLDAS--TQTTHELTIPNNLIGCIIGRQGAN 278
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 279 INEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 322
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|363747263|ref|XP_003643960.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Gallus
gallus]
Length = 349
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 36/284 (12%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPNSD-RIPFPYGSERPGHGPTFDRPPSPR 205
DR S + H A + D PP I Y +P + +
Sbjct: 189 FAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDL-TKLHQLAMQQ 247
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
S P G G ++SS P + +G A+ T T+ E+ IP + + G +
Sbjct: 248 SHFPMSHGNTGFSGIESSS---PEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGA 303
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 304 KINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 347
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|443687982|gb|ELT90806.1| hypothetical protein CAPTEDRAFT_1308 [Capitella teleta]
Length = 333
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 119/283 (42%), Gaps = 35/283 (12%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R TGASI+V + P + + V V G
Sbjct: 85 VTLRLIVPASQCGSLIGKGGAKIKEIRELTGASIQV-ASEMLP---NSTERAVTVSGQAD 140
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ +++I + E+ P G + P P P P P+S G +
Sbjct: 141 AITQCIYNICCVMLES--------PPKGAT----IPYRPKPCVPPVMLPSSCGGQAFSIQ 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
+ + PS P Q S P+ PP + + D P +
Sbjct: 189 GQQIL---LPPSHPNATQPDVSPHCVPLPPPCFISLRARLQTHSLICIIIRDVYPGMNAA 245
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
G+ P+ P ++G A +++ T E+ IP + + G + +
Sbjct: 246 MAAGI---------------PQFAPRQAGPGAN-MSAQTHEMTIPNDLIGCIIGRGGAKI 289
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ IRQ+SGA + + + G+++ V + G+ + + AAQ +I+A
Sbjct: 290 NEIRQLSGATIKIANADEGSSDRKVTIMGSLETIHAAQYMINA 332
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
IGC++GRGG ++E+R+ +GA+I++ D+ GS D V ++G+ ++ A + I +
Sbjct: 278 IGCIIGRGGAKINEIRQLSGATIKIANADE----GS-SDRKVTIMGSLETIHAAQYMINA 332
Query: 99 R 99
R
Sbjct: 333 R 333
>gi|327263852|ref|XP_003216731.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Anolis
carolinensis]
Length = 360
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 124/284 (43%), Gaps = 36/284 (12%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPNSD-RIPFPYGSERPGHGPTFDRPPSPR 205
DR S + H A + D PP I Y +P + +
Sbjct: 189 FAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDL-TKLHQLAMQQ 247
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
S P G G ++SS P + +G A+ T T+ E+ IP + + G +
Sbjct: 248 SHFPMSHGNTGFSGVESSS---PDEKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGA 303
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 304 KINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 347
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|345486914|ref|XP_001607400.2| PREDICTED: poly(rC)-binding protein 3-like [Nasonia vitripennis]
Length = 476
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 114/285 (40%), Gaps = 52/285 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 112 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 167
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ ++HI + E+ P G + P+RP+ P G
Sbjct: 168 AITQCIYHICCVMLES--------PPKGATI----------PYRPK---------PQVGG 200
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P + Q F Q ++ VP +SD G
Sbjct: 201 PVI-----LAGGQAFTIQGNYA------VPAHSD-----MGKLGSSPLAGLAALGLGGLA 244
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
P GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 245 APANTGGLNPAALAALAGSQLRTNNANRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 302
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIH 309
+ IRQISGA + +++ + G T+ + ++G D + AQ LI+
Sbjct: 303 AEIRQISGAMIRISNCEEREGGPTDRTITITGNPDSVALAQYLIN 347
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 15 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 67
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 68 TGPTNSIFKAFTLICKKFEE 87
>gi|307108077|gb|EFN56318.1| hypothetical protein CHLNCDRAFT_57590 [Chlorella variabilis]
Length = 688
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P ++V ARLLV S +G L+GRGG + + +GA +R+ PK + P C DE+V+V+
Sbjct: 193 PQRSVEARLLVDSSVVGFLVGRGGATIKDTMARSGAGVRILPKAELPACACLGDEVVRVV 252
Query: 84 GNYHSVQDALFHITSRLRETIF 105
G+ + AL + S+++ +
Sbjct: 253 GSCEAACAALRLLASQIKAHVL 274
>gi|449445515|ref|XP_004140518.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
gi|449529952|ref|XP_004171961.1| PREDICTED: poly(rC)-binding protein 2-like [Cucumis sativus]
Length = 276
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GASI + +Q P C S H D +VQ+ G+ +
Sbjct: 165 RLLIAGSQAGSLIGASGQNIEKLRNSSGASITILAPNQLPLCASAHESDRVVQISGDILA 224
Query: 89 VQDALFHITSRLR 101
V AL I ++LR
Sbjct: 225 VLKALEEIGNQLR 237
>gi|302814684|ref|XP_002989025.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
gi|300143126|gb|EFJ09819.1| hypothetical protein SELMODRAFT_447544 [Selaginella moellendorffii]
Length = 1034
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP--HDEIVQVIGNY 86
+ RLL+ Q G L+G+ G + +R ++ AS+RV P DQ P C + D +VQ+ G
Sbjct: 598 LTRLLIAGSQAGSLIGKAGANIKNIRGSSSASVRVLPSDQLPLCSAACETDRLVQISGEV 657
Query: 87 HSVQDALFHITSRLRETIFPMKRPGPNN 114
+VQ A+ + + LR+ P K P N
Sbjct: 658 AAVQMAIELVAANLRDN--PPKETVPTN 683
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+L + E+ +P M + G+ ++SH+R +SGA + VN K + E ++ GT +Q
Sbjct: 757 MLPKVSAEMSVPSSVMGGLIGKGGFHISHMRSVSGATIKVNGSKESSVERTILFEGTQEQ 816
>gi|410920039|ref|XP_003973491.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 327
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 109/286 (38%), Gaps = 72/286 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R++V + Q G L+G+GG + E+R +TGA ++V D P + + + + G H
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGTAH 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPG--SYPS 144
S+ + + I + E+ P G + P P P F A G + P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIPQ 205
Query: 145 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSP 204
P S + P HQ A G PFP +
Sbjct: 206 P----DSSSAAISPQLSKLHQLAMQQG------------PFPMAT--------------- 234
Query: 205 RSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
+ GFT + ++ +H E+ IP + + G
Sbjct: 235 -----------------CNQGFTGMDASAQACSH---------EMTIPNDLIGCIIGRQG 268
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ +S IRQ+SGA + + +P G+T+ V ++G+ + A+ LI A
Sbjct: 269 AKISEIRQMSGAQIKIANPVDGSTDRQVTITGSPASIGLAEYLIKA 314
>gi|348511523|ref|XP_003443293.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 321
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 79/328 (24%), Positives = 125/328 (38%), Gaps = 63/328 (19%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + IV + G
Sbjct: 15 TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GNCPERIVTITGPT 67
Query: 87 HSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPV 146
++ A I + E I N S P + PP R + GS +
Sbjct: 68 DTIFKAFAMIAYKFEEDII--------NSMSNSPATSK-PPVTLRLVVPASQCGSL---I 115
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGS----------------E 190
G S + M S Q A M+P +++R G+ E
Sbjct: 116 GKGGSKIKEMRESTGAQVQVA-----GDMLPNSTERAVTISGTPEAIIQCVRQICVVMLE 170
Query: 191 RPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG-------------------FTP--R 229
P G T P P S TP GG FTP +
Sbjct: 171 SPPKGATIPYRPKPTS-TPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQ 229
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
P G A+ ST E+ IP + + G + ++ IRQ+SGA + + + G++E
Sbjct: 230 TTPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSE 288
Query: 290 GVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++GT + AQ LI+A + VT
Sbjct: 289 RQITITGTPANISLAQYLINARLTSEVT 316
>gi|291402366|ref|XP_002717547.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 334
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 59/283 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 97 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 152
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + ET+ P G + P P P F G Y P
Sbjct: 153 SIIECVKQICVVMLETL----SQSPPKGVTIPYWPKPSSSPVIFAGGQAYTIQGQYAIP- 207
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 208 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 231
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 232 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 278
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 279 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 321
>gi|193083112|ref|NP_001122385.1| poly(rC)-binding protein 2 isoform f [Homo sapiens]
gi|66911068|gb|AAH97410.1| Pcbp2 protein [Rattus norvegicus]
gi|78395095|gb|AAI07689.1| PCBP2 protein [Homo sapiens]
gi|417399138|gb|JAA46599.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 335
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 59/283 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + ET+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLETL----SQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 208
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 209 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 232
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 233 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 279
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 280 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 322
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|449442959|ref|XP_004139248.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 483
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 9/109 (8%)
Query: 5 PAQDAVMRVHSRIAEIGFE--------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRA 56
PA D ++RVH RI + G E G V RLLV + Q G L+G+ G V ++
Sbjct: 146 PAVDGLLRVHKRIVD-GLEGDNAHAPNAGSKVSTRLLVAASQAGSLIGKQGGTVKSIQEE 204
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ +RV + P D +V+V+G+ V A+ I S LR+ +
Sbjct: 205 SNCIVRVLGSEDLPVFALQDDRVVEVLGDPAGVHKAVELIASHLRKFLV 253
>gi|297262518|ref|XP_001105618.2| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Macaca mulatta]
Length = 335
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 109/283 (38%), Gaps = 59/283 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + ET+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLETL----SQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 208
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 209 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 232
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 233 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 279
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 280 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 322
>gi|397521979|ref|XP_003846057.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC)-binding protein 2 [Pan
paniscus]
Length = 465
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/308 (23%), Positives = 126/308 (40%), Gaps = 77/308 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P+ P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES-------------------PKGVTIPYRPK--PSS-----SPVI 187
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 188 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPPL-EAY 225
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 226 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGN-TGFSGIESSSPEVKGYWAGLDASAQT- 283
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 284 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 343
Query: 305 QSLIHAFI 312
Q LI+ +
Sbjct: 344 QYLINVSL 351
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|347300276|ref|NP_001231441.1| poly(rC) binding protein 2 [Sus scrofa]
gi|417399505|gb|JAA46755.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 353
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 122/290 (42%), Gaps = 55/290 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 193 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 230
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR--PVESGNHA------AILTSTTIEVVIPQLYMAHV 259
T QG + P+ GN A +T+ E+ IP + +
Sbjct: 231 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCI 290
Query: 260 YGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
G + ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 291 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 340
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|356530005|ref|XP_003533576.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 385
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GASI V +Q P C S H D +VQ+ G+ +
Sbjct: 198 RLLIAGSQAGGLIGMSGQNIEKLRDSSGASITVLAPNQLPLCASAHESDRVVQLSGDVPA 257
Query: 89 VQDALFHITSRLRE 102
V AL I +LRE
Sbjct: 258 VMKALEEIGCQLRE 271
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 9/71 (12%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
GQ V+ R++V S+QIG ++G+ GH + ++R T A+I++ D R H+E V +I
Sbjct: 99 GQDVIFRIVVPSRQIGKVIGKEGHRIQKIREDTKATIKI--ADAIAR----HEERVIIIS 152
Query: 85 ---NYHSVQDA 92
N V DA
Sbjct: 153 SKDNDEKVTDA 163
>gi|213511793|ref|NP_001133381.1| poly(rC)-binding protein 2 [Salmo salar]
gi|209152662|gb|ACI33123.1| PolyrC-binding protein 2 [Salmo salar]
Length = 327
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 118/283 (41%), Gaps = 65/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R++V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ + SP + G
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPKPS-GSPVIFAG--G 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
+++ QP A+ S + + + PFP G PG
Sbjct: 193 QAYAVQGQHAIPQPDSSSASISPQLTKLHQLAMQQSPFPMGPNNPGF------------- 239
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
QG G DAS+ ++ +H E+ IP + + G S +
Sbjct: 240 --QG-------GMDASA---------QTSSH---------EMTIPNDLIGCIIGRQGSKI 272
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ IRQ+SGA + + +P G+ + V ++G++ + A+ LI+A
Sbjct: 273 NEIRQMSGAQIKIANPVEGSADRQVTITGSAASISLAEYLINA 315
>gi|242060324|ref|XP_002451451.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
gi|241931282|gb|EES04427.1| hypothetical protein SORBIDRAFT_04g002170 [Sorghum bicolor]
Length = 508
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 124/324 (38%), Gaps = 61/324 (18%)
Query: 4 SPAQDAVMRVHSRIAEI---------GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
SPA +A +++ I EI RLLV +Q L+G+ G + +
Sbjct: 126 SPAMNAAIKIFKHINEIEEINSDGTLSASASDICSVRLLVPFEQAVHLIGKQGVTIKSIE 185
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+TG ++R+ +D+ + + IV++ G V +AL + LR+ +
Sbjct: 186 ESTGTTVRIRDEDELLSHETVDERIVEIRGASLKVLNALKSVLELLRKFLV--------- 236
Query: 115 GHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP 174
H L F +P+ +YP + +Q F SHG DP
Sbjct: 237 DHGVLHLFERKNQEVVQPQ----DASNYP------------LAVNQDFLLSDQRSHG-DP 279
Query: 175 MVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPR----- 229
+ S R+ + GH P+F P +P+G G P
Sbjct: 280 I----SSRLLY-------GHDPSFCGPHHATDSLMIQQSRANPKGSRFLYGRDPSFHDPY 328
Query: 230 ----NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
++P +S ++T T + +P Y V G N+ +IR +SGA VV +
Sbjct: 329 SRDLSQPTDS-----LITKITRTMQVPLAYAEDVIGVRGENIEYIRSVSGA-VVALEEIG 382
Query: 286 GATEGVVMVSGTSDQMRAAQSLIH 309
E VM+ GT Q++ A L+
Sbjct: 383 DYQEVQVMIEGTPSQVQTAHQLVQ 406
>gi|449531912|ref|XP_004172929.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 453
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 5 PAQDAVMRVHSRIAEIGFE--------PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRA 56
PA D ++RVH RI + G E G V RLLV + Q G L+G+ G V ++
Sbjct: 146 PAVDGLLRVHKRIVD-GLEGDNAHAPNAGSKVSTRLLVAASQAGSLIGKQGGTVKSIQEE 204
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
+ +RV + P D +V+V+G+ V A+ I S LR+
Sbjct: 205 SNCIVRVLGSEDLPVFALQDDRVVEVLGDPAGVHKAVELIASHLRK 250
>gi|328709625|ref|XP_001951678.2| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Acyrthosiphon
pisum]
Length = 411
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 128/315 (40%), Gaps = 64/315 (20%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RL+V + Q G L+G+GG+ + E+R ATGA I+V D P+ + V + G S+
Sbjct: 102 RLIVPASQCGSLIGKGGNKIKEIREATGAQIQV-ASDVLPQ---STERAVTLTGTRDSIT 157
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPF---PEMPPPPFRPRHNPASPGSYPSPVG 147
+FHI + + E+ P G + P+ P+M P + S S G
Sbjct: 158 QCIFHICAVMVES--------PPKGVTI--PYRAKPQMGAPVILAGGQAFTLASAGSAAG 207
Query: 148 -PFHSMDRGMGP-SQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
+M G GP + P MVPP+ P + G D P
Sbjct: 208 CDVGTMMVGGGPYNAPM-----------LMVPPS------PGAAASLGLIDPLDYPLLKN 250
Query: 206 SWTPQGVGG--GDPRGFDASSGFTPRNRPVESGNHAAILT-------------------- 243
++ P +G G+P A+ G P S N AA+
Sbjct: 251 AFGPSQLGKLTGNPLAGLAALGLGSLGGPANSFNPAALAALAGSQLRSNGSGANINSRSG 310
Query: 244 --STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK----PGATEGVVMVSGT 297
T E+ +P + + G+ + ++ IRQISGA + +++ + +T+ + ++G
Sbjct: 311 GGQQTHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDRTITITGN 370
Query: 298 SDQMRAAQSLIHAFI 312
D + AQ LI+ I
Sbjct: 371 PDSVALAQYLINMRI 385
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH-DEIVQVIGNYHSV 89
+ V + IGC++G+GG ++E+R+ +GA IR+ + R GS D + + GN SV
Sbjct: 317 EMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRI--SNCEDREGSASTDRTITITGNPDSV 374
Query: 90 QDALFHITSRLRETIFPMKRPG 111
A + I R+ + PG
Sbjct: 375 ALAQYLINMRISMETAGLALPG 396
>gi|449531366|ref|XP_004172657.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 86
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 48/69 (69%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+++E++IP V G+ +N+++IR+ISGA + ++D K + + ++SGTS+Q R A
Sbjct: 16 SSLEMLIPANAAGKVIGKGGANIANIRKISGALIEISDSKSSRGDRIALISGTSEQKRTA 75
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 76 ENLIQAFIM 84
>gi|410897345|ref|XP_003962159.1| PREDICTED: poly(rC)-binding protein 3-like [Takifugu rubripes]
Length = 321
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 79/327 (24%), Positives = 125/327 (38%), Gaps = 63/327 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + IV + G
Sbjct: 16 LTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE-------GNCPERIVTITGPTD 68
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ A I + E I N S P + PP R + GS +G
Sbjct: 69 TIFKAFAMIAYKFEEDII--------NSMSNSPATSK-PPVTLRLVVPASQCGSL---IG 116
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGS----------------ER 191
S + M S Q A M+P +++R G+ E
Sbjct: 117 KGGSKIKEMRESTGAQVQVA-----GDMLPNSTERAVTISGTPEAIIQCVKQICVVMLES 171
Query: 192 PGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSG-------------------FTPRNR- 231
P G T P P S TP GG FTP +
Sbjct: 172 PPKGATIPYRPKPAS-TPVIFSGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFTPLGQA 230
Query: 232 -PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
P G A+ ST E+ IP + + G + ++ IRQ+SGA + + + G++E
Sbjct: 231 TPAFPGLDASPPASTH-ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSER 289
Query: 291 VVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++GT + AQ LI+A + VT
Sbjct: 290 QITITGTPANISLAQYLINARLTSEVT 316
>gi|344266063|ref|XP_003405100.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Loxodonta
africana]
Length = 360
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/307 (22%), Positives = 114/307 (37%), Gaps = 82/307 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITS------------------RLRETIFPMKRPGPNNGHSYLP-------PF 122
S+ + + I RL+ +I+P R + + P
Sbjct: 154 SIIECVKQICVVMLEVSPQAPPKLQCIPWRLKSSIYPQDRYSTGSDSASFPHTTPSMCLN 213
Query: 123 PEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDR 182
P++ PP G Y P P HQ A PM
Sbjct: 214 PDLEGPPLEAY---TIQGQYAIP-----------QPDLTKLHQLAMQQSHFPMT------ 253
Query: 183 IPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAIL 242
HG T GF +P + +G A+
Sbjct: 254 -----------HGNT---------------------GFSGIESSSPEVKGYWAGLDASAQ 281
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 282 T-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASIS 340
Query: 303 AAQSLIH 309
AQ LI+
Sbjct: 341 LAQYLIN 347
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|426218397|ref|XP_004003433.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Ovis aries]
Length = 319
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 78/341 (22%), Positives = 130/341 (38%), Gaps = 63/341 (18%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP 132
G+ + IV + G ++ A I + E I N S P + PP R
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII--------NSMSNSPATSK-PPVTLRL 102
Query: 133 RHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGS--- 189
+ GS +G S + + S Q A M+P +++R G+
Sbjct: 103 VVPASQCGSL---IGKGGSKIKEIRESTGAQVQVA-----GDMLPNSTERAVTISGTPDA 154
Query: 190 -------------ERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGF---------- 226
E P G T P P S TP GG
Sbjct: 155 IIQCVKQICVVMLESPRKGVTVVVAPKPAS-TPVIFAGGQAYTIQGQYAIPHPDLTKLHQ 213
Query: 227 -----TP-----RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
TP + P A ++T E+ IP + + G + ++ IRQ+SGA
Sbjct: 214 LAMQQTPFPPLGQTNPAFPAGLDASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGA 273
Query: 277 NVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ + + G++E + ++GT + AQ LI+A + VT
Sbjct: 274 QIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 314
>gi|260829253|ref|XP_002609576.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
gi|229294938|gb|EEN65586.1| hypothetical protein BRAFLDRAFT_87781 [Branchiostoma floridae]
Length = 408
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 108/289 (37%), Gaps = 82/289 (28%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R TGASI+V D P + + V V G
Sbjct: 103 VTLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-AGDMLP---NSTERAVTVSGTPD 158
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPV- 146
++ ++HI + E+ P G + P++PR PAS S PV
Sbjct: 159 AISQCVYHICCVMLES--------PPKGATI----------PYKPR--PASGTSTSGPVV 198
Query: 147 ---GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPS 203
G + HQ A P + P + P T +P +
Sbjct: 199 FAGGQLTKL-----------HQLALQQ--TPYITPGTT---LPAALATQFGVQTASQPGN 242
Query: 204 PRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
P S T + + IP + + G+
Sbjct: 243 PSSQTHE--------------------------------------LTIPNELIGCIIGKG 264
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
++ IRQ SGA + + + G+T+ V ++GT + + AQ LI+ +
Sbjct: 265 GCKINEIRQCSGATIKIAGMQEGSTDRQVTITGTPESISMAQFLINTSL 313
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V D P +TE V VSGT D + +
Sbjct: 104 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVAGDMLPNSTERAVTVSGTPDAI--S 161
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 162 QCVYH--ICC 169
>gi|126345443|ref|XP_001362482.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Monodelphis
domestica]
gi|351706147|gb|EHB09066.1| Poly(rC)-binding protein 2 [Heterocephalus glaber]
gi|440900676|gb|ELR51755.1| Poly(rC)-binding protein 2, partial [Bos grunniens mutus]
Length = 351
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 76/305 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGN-TGFSGIESSSPEVKGYWAGLDASAQT- 284
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 344
Query: 305 QSLIH 309
Q LI+
Sbjct: 345 QYLIN 349
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|348517286|ref|XP_003446165.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Oreochromis niloticus]
Length = 435
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 124/325 (38%), Gaps = 70/325 (21%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T SI++F + C D +V V G V
Sbjct: 124 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQE----CCPQSTDRVVLVGGKTERVV 179
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLPPFP-------------------EMPPPPF 130
+ + + + E P+K R P + + Y + P
Sbjct: 180 ECIKTMLELISEA--PIKGRTQPYDPNFYDETYEYGGFTMMFEERGGGRRPMGGFPMRGS 237
Query: 131 RPRHNPASPGSYPSPVGPFHSMDRGMGPSQP----FDHQAAF---------------SHG 171
R H S PS G G GP P +D + S G
Sbjct: 238 RSSHGERSFDRMPSSRG-------GRGPMPPSRRDYDEMSPRRGPPPPHPSRVGRGSSRG 290
Query: 172 MD-PMVPPN--SDRIPFPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTP 228
+ PM P+ DR Y S R + DR P ++ GGG +D SS +
Sbjct: 291 RNMPMGHPHRGDDRY---YDSYRGSDERSNDRRGRPDRYSDSMSGGG----YDNSSSWDS 343
Query: 229 RNRPVESGNHAAILTS----TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
+SG + T +V IP+ + G+ + IR SGA++ +++P
Sbjct: 344 ----YQSGGRGSYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPL 399
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIH 309
G+ + ++ +SGT DQ++ AQ L+
Sbjct: 400 EGSEDRIITISGTQDQIQNAQYLLQ 424
>gi|363747261|ref|XP_003643959.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Gallus
gallus]
Length = 348
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/288 (24%), Positives = 122/288 (42%), Gaps = 45/288 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPNSD-RIPFPYGSERPGHGPTFDRPPSPR 205
DR S + H A + D PP I Y +P + +
Sbjct: 189 FAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDL-TKLHQLAMQQ 247
Query: 206 SWTPQGVGGGDPRGFDASS----GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYG 261
S P G G ++SS G+ + ++ +H E+ IP + + G
Sbjct: 248 SHFPMSHGNTGFSGIESSSPEVKGYWGLDASAQTTSH---------ELTIPNDLIGCIIG 298
Query: 262 ENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 299 RQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 346
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|356530338|ref|XP_003533739.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 443
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 62/135 (45%), Gaps = 18/135 (13%)
Query: 4 SPAQDAVMRVHSRIA---EIGFEPGQAVVA------RLLVHSQQIGCLLGRGGHIVSEMR 54
SPA DAV+R+ R++ E E ++ RLLV S Q L+G+ G ++ ++
Sbjct: 113 SPAMDAVVRIFKRVSGFSETDAENQESAAGLAFSSIRLLVASTQAINLIGKQGSLIKSIQ 172
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
T AS+RV D+ + ++ IV++ G V AL + LR+ +
Sbjct: 173 ENTSASVRVLSGDEVQFYATANERIVEIQGEALKVLKALEAVVGHLRKFLV--------- 223
Query: 115 GHSYLPPFPEMPPPP 129
HS LP F + P
Sbjct: 224 DHSVLPLFEKTYNAP 238
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
A I+T+ + IP Y + G +N+ +IR+ SGA + V + + E VV + GTS
Sbjct: 314 APIVTTVIQTMQIPLSYAEDIIGIQGTNIEYIRRTSGAILTVQESRV-PDEIVVEIKGTS 372
Query: 299 DQMRAAQSLIHAFI 312
+++ AQ LI I
Sbjct: 373 SEVQTAQQLIQDVI 386
>gi|328709627|ref|XP_003244018.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Acyrthosiphon
pisum]
Length = 525
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 77/312 (24%), Positives = 127/312 (40%), Gaps = 64/312 (20%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RL+V + Q G L+G+GG+ + E+R ATGA I+V D P+ + V + G S+
Sbjct: 102 RLIVPASQCGSLIGKGGNKIKEIREATGAQIQV-ASDVLPQ---STERAVTLTGTRDSIT 157
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPF---PEMPPPPFRPRHNPASPGSYPSPVG 147
+FHI + + E+ P G + P+ P+M P + S S G
Sbjct: 158 QCIFHICAVMVES--------PPKGVTI--PYRAKPQMGAPVILAGGQAFTLASAGSAAG 207
Query: 148 -PFHSMDRGMGP-SQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
+M G GP + P MVPP+ P + G D P
Sbjct: 208 CDVGTMMVGGGPYNAPM-----------LMVPPS------PGAAASLGLIDPLDYPLLKN 250
Query: 206 SWTPQGVGG--GDPRGFDASSGFTPRNRPVESGNHAAILT-------------------- 243
++ P +G G+P A+ G P S N AA+
Sbjct: 251 AFGPSQLGKLTGNPLAGLAALGLGSLGGPANSFNPAALAALAGSQLRSNGSGANINSRSG 310
Query: 244 --STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK----PGATEGVVMVSGT 297
T E+ +P + + G+ + ++ IRQISGA + +++ + +T+ + ++G
Sbjct: 311 GGQQTHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEDREGSASTDRTITITGN 370
Query: 298 SDQMRAAQSLIH 309
D + AQ LI+
Sbjct: 371 PDSVALAQYLIN 382
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH-DEIVQVIGNYHSVQDALFHIT 97
IGC++G+GG ++E+R+ +GA IR+ + R GS D + + GN SV A + I
Sbjct: 325 IGCIIGKGGTKIAEIRQISGAMIRI--SNCEDREGSASTDRTITITGNPDSVALAQYLIN 382
Query: 98 SRLR 101
L
Sbjct: 383 MSLE 386
>gi|242024312|ref|XP_002432572.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
gi|212518032|gb|EEB19834.1| heterogeneous nuclear ribonucleoprotein k, putative [Pediculus
humanus corporis]
Length = 365
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 11/107 (10%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
D ++RV ++EI + R+LVH Q GC++G+GG + E+R TGA I+++
Sbjct: 75 DTMLRV---VSEILPNLEDVIDIRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY--- 128
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
+ C D IVQ+ G + DA+ L+ + P+K G NN
Sbjct: 129 -SNCCPQSTDRIVQINGKGNLCVDAIRECMELLKTS--PIK--GMNN 170
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+ +V IP+ + G+ S + IR SGA + +++P PG+ + ++ +SGT +Q++
Sbjct: 290 KNSTQVTIPKDLAGAIIGKGGSRIRKIRMESGAAITIDEPLPGSNDRIITISGTPNQIQM 349
Query: 304 AQSLIHAFIL 313
AQ L+ ++
Sbjct: 350 AQYLLQQRLV 359
>gi|61557337|ref|NP_001013241.1| poly(rC)-binding protein 2 [Rattus norvegicus]
gi|193083108|ref|NP_001122383.1| poly(rC)-binding protein 2 isoform d [Homo sapiens]
gi|6707736|sp|Q15366.1|PCBP2_HUMAN RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=Heterogeneous nuclear ribonucleoprotein
E2; Short=hnRNP E2
gi|460773|emb|CAA55015.1| hnRNP-E2 [Homo sapiens]
gi|50926841|gb|AAH78906.1| Poly(rC) binding protein 2 [Rattus norvegicus]
gi|119617116|gb|EAW96710.1| poly(rC) binding protein 2, isoform CRA_e [Homo sapiens]
Length = 365
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 126/311 (40%), Gaps = 85/311 (27%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 193 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 230
Query: 208 TPQGV-------------------------GGGDPRGFDASS----GFTPRNRPVESGNH 238
T QG G G ++SS G+ + ++ +H
Sbjct: 231 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSH 290
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++
Sbjct: 291 ---------ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 341
Query: 299 DQMRAAQSLIH 309
+ AQ LI+
Sbjct: 342 ASISLAQYLIN 352
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|14141166|ref|NP_114366.1| poly(rC)-binding protein 2 isoform b [Homo sapiens]
gi|157041229|ref|NP_001096635.1| poly(rC)-binding protein 2 isoform 1 [Mus musculus]
gi|73996203|ref|XP_534789.2| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Canis lupus
familiaris]
gi|149714829|ref|XP_001504573.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Equus caballus]
gi|297692024|ref|XP_002823365.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pongo abelii]
gi|301775803|ref|XP_002923308.1| PREDICTED: poly(rC)-binding protein 2-like [Ailuropoda melanoleuca]
gi|332206039|ref|XP_003252097.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Nomascus
leucogenys]
gi|332839234|ref|XP_003313706.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Pan troglodytes]
gi|395541533|ref|XP_003772697.1| PREDICTED: poly(rC)-binding protein 2 [Sarcophilus harrisii]
gi|403296804|ref|XP_003939285.1| PREDICTED: poly(rC)-binding protein 2 [Saimiri boliviensis
boliviensis]
gi|410964553|ref|XP_003988818.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Felis catus]
gi|426224368|ref|XP_004006343.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Ovis aries]
gi|426372753|ref|XP_004053282.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Gorilla gorilla
gorilla]
gi|2500577|sp|Q61990.1|PCBP2_MOUSE RecName: Full=Poly(rC)-binding protein 2; AltName: Full=Alpha-CP2;
AltName: Full=CTBP; Short=CBP; AltName: Full=Putative
heterogeneous nuclear ribonucleoprotein X; Short=hnRNP X
gi|436894|gb|AAA03705.1| nucleic acid binding protein [Mus musculus]
gi|12654635|gb|AAH01155.1| Poly(rC) binding protein 2 [Homo sapiens]
gi|13172240|gb|AAK14059.1| alpha-CP2 [Mus musculus]
gi|50925529|gb|AAH78909.1| Pcbp2 protein [Rattus norvegicus]
gi|119617113|gb|EAW96707.1| poly(rC) binding protein 2, isoform CRA_b [Homo sapiens]
gi|148672029|gb|EDL03976.1| poly(rC) binding protein 2, isoform CRA_c [Mus musculus]
gi|149031920|gb|EDL86832.1| rCG50739, isoform CRA_a [Rattus norvegicus]
gi|158257714|dbj|BAF84830.1| unnamed protein product [Homo sapiens]
Length = 362
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 76/305 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWAGLDASAQT- 284
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 344
Query: 305 QSLIH 309
Q LI+
Sbjct: 345 QYLIN 349
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|426218399|ref|XP_004003434.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Ovis aries]
Length = 336
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 114/294 (38%), Gaps = 64/294 (21%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGT-- 151
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHS-YLPPFPEMPPPPFRPRHNPASPGSYPSPV 146
DA+ ++ + ++ P G S + P P P F G Y P
Sbjct: 152 --PDAIIQCVKQICVVMLEVQSKSPPRGVSRVVAPKPASTPVIFAGGQAYTIQGQYAIP- 208
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFP-YGSERPGHGPTFDRP-PSP 204
H P HQ A + PFP G P P DR P
Sbjct: 209 ---H-------PDLTKLHQLAM------------QQTPFPPLGQTNPAF-PGTDRAVPFV 245
Query: 205 RS-WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
RS W DAS ++T E+ IP + + G
Sbjct: 246 RSPWA----------CLDASP------------------PASTHELTIPNDLIGCIIGRQ 277
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 278 GTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 331
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|431921619|gb|ELK18971.1| Poly(rC)-binding protein 2 [Pteropus alecto]
Length = 446
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 121/293 (41%), Gaps = 59/293 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 90 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 145
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 146 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 180
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 181 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPPL-EAY 218
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR--PVESGNHA------AILTSTTIEVVIPQLYMAHV 259
T QG + P+ GN A +T+ E+ IP + +
Sbjct: 219 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCI 278
Query: 260 YGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
G + ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+ +
Sbjct: 279 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVSL 331
>gi|224116384|ref|XP_002317284.1| predicted protein [Populus trichocarpa]
gi|222860349|gb|EEE97896.1| predicted protein [Populus trichocarpa]
Length = 85
Score = 54.3 bits (129), Expect = 6e-05, Method: Composition-based stats.
Identities = 25/69 (36%), Positives = 47/69 (68%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
+T+E+++P + V G+ +N+++IR+ISGA + ++D + + +SGT +Q RAA
Sbjct: 15 STLEMLVPANAVGKVMGKGGANIANIRKISGAMIEISDANSARGDRIARISGTLEQKRAA 74
Query: 305 QSLIHAFIL 313
++LI AFI+
Sbjct: 75 ENLIQAFIM 83
>gi|189238821|ref|XP_968538.2| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein k
[Tribolium castaneum]
gi|270010156|gb|EFA06604.1| hypothetical protein TcasGA2_TC009519 [Tribolium castaneum]
Length = 414
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + R+++H Q GC++G+ G+ + E+R TGA I++F + AP+ D I+Q++G
Sbjct: 95 GNELDLRMMIHQSQAGCVIGKAGYKIKELREKTGARIKIF-SNVAPQS---TDRIIQIVG 150
Query: 85 NYHSVQDALFHITSRLR 101
D++ I + ++
Sbjct: 151 EPSKCVDSIREIITLIK 167
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 5/86 (5%)
Query: 232 PVESG-----NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
P++SG N A + TT +V IP+ + G+ + IRQ SGA + +++P PG
Sbjct: 320 PLQSGGMGPQNGGATGSKTTTQVTIPKDLAGAIIGKGGGRIRKIRQDSGAGITIDEPLPG 379
Query: 287 ATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + ++ +SGT +Q++ AQ L+ +
Sbjct: 380 SNDRIITISGTPNQIQMAQYLLQQSV 405
>gi|327263854|ref|XP_003216732.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Anolis
carolinensis]
Length = 331
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 63/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPM-----------------SHGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 229 ------------GFSGVESSSPDEKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 275
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 276 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|194387672|dbj|BAG61249.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/282 (23%), Positives = 109/282 (38%), Gaps = 72/282 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 60 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 115
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P S P
Sbjct: 116 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK-----PSSSPVIFA 156
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
G HQ A PM N+ G P W
Sbjct: 157 ---------GGQLTKLHQLAMQQSHFPMTHGNTGF-----------SGIESSSPEVKGYW 196
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
G DAS+ +T+ E+ IP + + G + +
Sbjct: 197 -----------GLDASA------------------QTTSHELTIPNDLIGCIIGRQGAKI 227
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 228 NEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 269
>gi|328702411|ref|XP_003241892.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Acyrthosiphon pisum]
Length = 428
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R+LVH Q GC++G+GG V E+R TG+ I+++ C D +VQ+ G +
Sbjct: 118 VDVRMLVHQSQAGCIIGKGGLKVKELREKTGSRIKIY----TSCCPMSTDRVVQITGKPN 173
Query: 88 SVQDALFHITSRLR 101
+ D + + L+
Sbjct: 174 TCSDCVREVLDLLK 187
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
+G AA ST +V IP+ + G+ + + IRQ SGA + + +P G+ E ++ +
Sbjct: 339 AGKPAAFNGST--QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITI 396
Query: 295 SGTSDQMRAAQSLIHAFI 312
+GT Q++ AQ L+ +
Sbjct: 397 NGTDSQIQMAQYLLQQCV 414
>gi|328702409|ref|XP_001943097.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Acyrthosiphon pisum]
gi|328702413|ref|XP_003241893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Acyrthosiphon pisum]
Length = 426
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R+LVH Q GC++G+GG V E+R TG+ I+++ C D +VQ+ G +
Sbjct: 116 VDVRMLVHQSQAGCIIGKGGLKVKELREKTGSRIKIY----TSCCPMSTDRVVQITGKPN 171
Query: 88 SVQDALFHITSRLR 101
+ D + + L+
Sbjct: 172 TCSDCVREVLDLLK 185
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
+G AA ST +V IP+ + G+ + + IRQ SGA + + +P G+ E ++ +
Sbjct: 337 AGKPAAFNGST--QVTIPKDLAGAIIGKAGARIRRIRQDSGAGITIGEPTEGSDERIITI 394
Query: 295 SGTSDQMRAAQSLIHAFI 312
+GT Q++ AQ L+ +
Sbjct: 395 NGTDSQIQMAQYLLQQCV 412
>gi|334350022|ref|XP_003342305.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
Length = 320
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 63/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 229 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 275
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 276 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|148833484|ref|NP_001092090.1| poly(rC)-binding protein 2 isoform c [Homo sapiens]
gi|157042772|ref|NP_001096636.1| poly(rC)-binding protein 2 isoform 3 [Mus musculus]
gi|73996241|ref|XP_857995.1| PREDICTED: poly(rC)-binding protein 2 isoform 20 [Canis lupus
familiaris]
gi|149714839|ref|XP_001504575.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Equus caballus]
gi|291389259|ref|XP_002711066.1| PREDICTED: poly(rC) binding protein 2-like isoform 3 [Oryctolagus
cuniculus]
gi|332206041|ref|XP_003252098.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Nomascus
leucogenys]
gi|348581075|ref|XP_003476303.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cavia porcellus]
gi|410964551|ref|XP_003988817.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Felis catus]
gi|426224372|ref|XP_004006345.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Ovis aries]
gi|426372755|ref|XP_004053283.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Gorilla gorilla
gorilla]
gi|51491472|dbj|BAD36897.1| poly(rC) binding protein 2 [Homo sapiens]
gi|119617112|gb|EAW96706.1| poly(rC) binding protein 2, isoform CRA_a [Homo sapiens]
gi|148672027|gb|EDL03974.1| poly(rC) binding protein 2, isoform CRA_a [Mus musculus]
gi|149031921|gb|EDL86833.1| rCG50739, isoform CRA_b [Rattus norvegicus]
Length = 331
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 63/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 229 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 275
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 276 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|357449597|ref|XP_003595075.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355484123|gb|AES65326.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 470
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 17/129 (13%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQ--------AVVARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DAV+R+ R++ + + RLLV S Q L+G+ G I+ ++
Sbjct: 130 SPAMDAVIRIFKRVSGLSETDSENKGPAGVTLCSIRLLVASTQAISLIGKQGTIIRSIQE 189
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
++GAS+RV D+ + + IV + G V AL + LR+ +
Sbjct: 190 SSGASVRVLSGDEVQYFATAEERIVDLQGEALMVLKALEAVIGHLRKFLVD--------- 240
Query: 116 HSYLPPFPE 124
HS LP + +
Sbjct: 241 HSILPVYEK 249
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
A I+T+ + IP Y + G +N+ +IR+ SGA + V + + E VV + GT+
Sbjct: 331 APIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRV-PDEIVVEIKGTT 389
Query: 299 DQMRAAQSLIHAFI 312
Q++ AQ LI I
Sbjct: 390 SQVQTAQQLIQEVI 403
>gi|356504987|ref|XP_003521274.1| PREDICTED: KH domain-containing protein At4g18375-like [Glycine
max]
Length = 529
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 221 DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 280
DAS G + P + +++T T + IP Y V G + +N+S+IR+ SGA++ +
Sbjct: 383 DASMGIHSSSAPPQQ----SVVTKVTQHMQIPLTYADAVIGASGTNISYIRRASGASITI 438
Query: 281 NDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + E V +SGTS Q++AAQ L+ F+
Sbjct: 439 QETRGVPGEMTVEISGTSSQIQAAQQLVQNFM 470
>gi|363747265|ref|XP_003643961.1| PREDICTED: poly(rC)-binding protein 2-like isoform 3 [Gallus
gallus]
Length = 320
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 108/283 (38%), Gaps = 63/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPM-----------------SHGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 229 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 275
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 276 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|291327528|ref|NP_001167544.1| poly(rC)-binding protein 2 isoform 4 [Mus musculus]
gi|348581081|ref|XP_003476306.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Cavia porcellus]
gi|74149644|dbj|BAE36444.1| unnamed protein product [Mus musculus]
gi|194378584|dbj|BAG63457.1| unnamed protein product [Homo sapiens]
gi|417398924|gb|JAA46495.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 322
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 106/283 (37%), Gaps = 72/283 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + ET+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLETL----SQSPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 208
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 209 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 232
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G G DAS+ +T+ E+ IP + + G +
Sbjct: 233 --------GFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQGAK 266
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 267 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 309
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|255541092|ref|XP_002511610.1| conserved hypothetical protein [Ricinus communis]
gi|223548790|gb|EEF50279.1| conserved hypothetical protein [Ricinus communis]
Length = 363
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GA+I V +Q P C S H D +VQ+ G+
Sbjct: 168 RLLIAGSQAGSLIGVSGQNIEKLRNSSGATITVLAPNQLPLCASAHESDRVVQISGDVPV 227
Query: 89 VQDALFHITSRLRE 102
V A+ I +LRE
Sbjct: 228 VLKAVEEIGCQLRE 241
>gi|358255903|dbj|GAA57520.1| heterogeneous nuclear ribonucleoprotein K, partial [Clonorchis
sinensis]
Length = 1085
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATG-ASIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C D ++Q++G
Sbjct: 62 EGVDLRLLVHQSQAGCIIGRGGYKIKELREQSGLQTLKVYQM----LCPGSTDRVIQLVG 117
Query: 85 NYHSVQDALFHITSRL 100
+ V D L I L
Sbjct: 118 DLDKVVDCLQAIAELL 133
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+TT +V + + + G ++ +RQ S A++ ++ +PG + ++ ++GT +Q++
Sbjct: 278 TTTTQVSVSNKMIGAIMGRAGVRINQVRQESNADIKISRQEPGVEDRIITITGTPEQIQN 337
Query: 304 AQSLIHAF-ILCGVTS 318
AQ L+ + IL +S
Sbjct: 338 AQFLLQMWKILVSCSS 353
>gi|354490191|ref|XP_003507243.1| PREDICTED: poly(rC)-binding protein 2 isoform 1 [Cricetulus
griseus]
gi|344239259|gb|EGV95362.1| Poly(rC)-binding protein 2 [Cricetulus griseus]
Length = 362
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 125/305 (40%), Gaps = 76/305 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWAGLDASAQT- 284
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + +P G+T+ V ++G++ + A
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLA 344
Query: 305 QSLIH 309
Q LI+
Sbjct: 345 QYLIN 349
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|348502908|ref|XP_003439009.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 324
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 108/284 (38%), Gaps = 70/284 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R + GA ++V D P + + + V G
Sbjct: 98 VTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQV-AGDMLP---NSTERAITVAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F A G + P
Sbjct: 154 SIIECVKQICIVMLES--------PPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
D GPS HQ A PFP G
Sbjct: 205 ----QPDVSEGPSLTKLHQLAMQQS------------PFPIAHSNQGF------------ 236
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G DAS+ ++G+H E+ IP + + G +
Sbjct: 237 ----------QAGMDASA---------QTGSH---------ELTIPNDLIGCIIGRQGAK 268
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G+T+ V ++G+ + A+ LI+A
Sbjct: 269 INEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 312
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G S+
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTTSIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFSMIIEKLEEDI 83
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 21 GFEPGQAVVAR-----LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
GF+ G A+ L + + IGC++GR G ++E+R+ +GA I++ P GS
Sbjct: 235 GFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGST 290
Query: 76 HDEIVQVIGNYHSVQDALFHITSRL 100
D V + G++ S+ A + I +RL
Sbjct: 291 -DRQVTITGSHASISLAEYLINARL 314
>gi|395835433|ref|XP_003790684.1| PREDICTED: poly(rC)-binding protein 2-like [Otolemur garnettii]
Length = 414
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 76/318 (23%), Positives = 128/318 (40%), Gaps = 65/318 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR---CGSPHDEIVQVIG 84
+ RLL+H +++G ++G+ G V +MR +GA I + + R P + I +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGPTNAIFKAFS 73
Query: 85 NYHSVQ---DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPP----PFRPRHNPA 137
VQ D L + T R TI + + E PP P+RP+ P+
Sbjct: 74 TGAQVQVAGDMLPNSTERAI-TIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPK--PS 130
Query: 138 SPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPT 197
S SPV DR +S G SD FP+ + P
Sbjct: 131 S-----SPVIFAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPD 164
Query: 198 FDRPPSPRSWTPQG-----------------------VGGGDPRGFDASSGFTPRNRPVE 234
+ PP ++T QG + G+ GF +P +
Sbjct: 165 LEGPPL-EAYTIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGN-TGFSGIESSSPEVKGYW 222
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
+G A+ T T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V +
Sbjct: 223 AGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTI 281
Query: 295 SGTSDQMRAAQSLIHAFI 312
+G++ + AQ LI+ +
Sbjct: 282 TGSAASISLAQYLINVSL 299
>gi|431893776|gb|ELK03594.1| Poly(rC)-binding protein 3 [Pteropus alecto]
Length = 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 115/294 (39%), Gaps = 61/294 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGTPD 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ + I + E+ P G + P+RP+ P S P
Sbjct: 154 AIIQCVKQICVVMLES--------PPKGATI----------PYRPK-----PASTP---- 186
Query: 148 PFHSMDRGMGPSQPFDHQAAFSH--GMDPMVPPNSDRIPFP-YGSERPGH-GPTFDRPPS 203
+ G + Q A H + + + PFP G P G S
Sbjct: 187 ----VIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTNPAFPGEKLSLHSS 242
Query: 204 PRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
+ G P G DAS ++T E+ IP + + G
Sbjct: 243 EEAQNLMG----QPSGLDASP------------------PASTHELTIPNDLIGCIIGRQ 280
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 281 GTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 334
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMRDESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|387017714|gb|AFJ50975.1| Poly(rC)-binding protein 2-like [Crotalus adamanteus]
Length = 347
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 119/285 (41%), Gaps = 51/285 (17%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQA-AFSHGMDPMVPPNSD-RIPFPYGSERPGHGPTFDRPPSPR 205
DR S + H A + D PP I Y +P + +
Sbjct: 189 FAGGQDRYSSGSASYPHTAPSMCLNSDLEGPPQEAYTIQGQYAIPQPDL-TKLHQLAMQQ 247
Query: 206 SWTPQGVGG-GDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
S P G G G DAS+ +T+ E+ IP + + G
Sbjct: 248 SHFPMSHGNTGFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQG 289
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 290 AKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 334
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|9957161|gb|AAG09238.1|AF176327_1 alphaCP-3 [Mus musculus]
Length = 339
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/291 (25%), Positives = 114/291 (39%), Gaps = 55/291 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGT-- 151
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
DA+F ++ + ++ P P P P P F G Y P
Sbjct: 152 --PDAIFQCVKQI--CVVMLESP-PKGATIPYRPKPACTPVIFAGGQAYTIQGQYAIP-- 204
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H P Q HQ A P P FP G + P H S
Sbjct: 205 --H-------PDQLTKLHQLAMQQ--TPFPPLGQTNPAFP-GEKLPLHS----------S 242
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
Q + G G DAS ++T E+ IP + + G +
Sbjct: 243 EEAQNLMG-QSSGLDASP------------------PASTHELTIPNDLIGCIIGRQGTK 283
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 284 INEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 334
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|77736367|ref|NP_001029883.1| poly(rC)-binding protein 2 [Bos taurus]
gi|157057549|ref|NP_035172.2| poly(rC)-binding protein 2 isoform 2 [Mus musculus]
gi|291389257|ref|XP_002711065.1| PREDICTED: poly(rC) binding protein 2-like isoform 2 [Oryctolagus
cuniculus]
gi|348581077|ref|XP_003476304.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cavia porcellus]
gi|426224370|ref|XP_004006344.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Ovis aries]
gi|74268197|gb|AAI03398.1| Poly(rC) binding protein 2 [Bos taurus]
gi|119617114|gb|EAW96708.1| poly(rC) binding protein 2, isoform CRA_c [Homo sapiens]
gi|148672028|gb|EDL03975.1| poly(rC) binding protein 2, isoform CRA_b [Mus musculus]
gi|149031923|gb|EDL86835.1| rCG50739, isoform CRA_d [Rattus norvegicus]
gi|296487920|tpg|DAA30033.1| TPA: poly(rC) binding protein 2 [Bos taurus]
Length = 349
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 59/290 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR--PVESGNHA------AILTSTTIEVVIPQLYMAHV 259
T QG + P+ GN A +T+ E+ IP + +
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCI 286
Query: 260 YGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
G + ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 287 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|126345445|ref|XP_001362564.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Monodelphis
domestica]
Length = 338
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 120/290 (41%), Gaps = 59/290 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQGVGGGDPRGFDASSGFTPRNR--PVESGNHA------AILTSTTIEVVIPQLYMAHV 259
T QG + P+ GN A +T+ E+ IP + +
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSAGLDASAQTTSHELTIPNDLIGCI 286
Query: 260 YGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
G + ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 287 IGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 336
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|357140452|ref|XP_003571781.1| PREDICTED: uncharacterized protein LOC100836040 [Brachypodium
distachyon]
Length = 587
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 16/152 (10%)
Query: 5 PAQDAVMRVHSRIAE---IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
PA DA++RV+ I +G AVV R+L+ S+Q L+G G +++ + A+ I
Sbjct: 123 PAMDALLRVYQNIVNDDGLGMGSDSAVVTRILIPSEQALNLIGEQGSMINLIEEASQTDI 182
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
RV + P D IV++ G V+ AL + LR+ + S +P
Sbjct: 183 RVLDCNLPP-AALDEDRIVEIWGQPTRVRKALELVARHLRKYLV---------DRSVIPL 232
Query: 122 FPEMPPPPFRPRHNPASPGSYPS-PVGPFHSM 152
F P P H SP Y P GP ++
Sbjct: 233 FD--PHVPMTTSHVDTSPCYYSDHPEGPLQAI 262
>gi|395536907|ref|XP_003770450.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Sarcophilus
harrisii]
Length = 339
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 118/293 (40%), Gaps = 59/293 (20%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGTPD 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ + I + E+ P G + P+RP+ P S P
Sbjct: 154 AIIQCVKQICVVMLES--------PPKGATI----------PYRPK-----PASTP---- 186
Query: 148 PFHSMDRGMGPSQPFDHQAAFSH--GMDPMVPPNSDRIPFP-YGSERPGHGPTFDRPPSP 204
+ G + Q A H + + + PFP G P ++ P
Sbjct: 187 ----VIFAGGQAYTIQGQYAIPHPDQLTKLHQLAMQQTPFPPLGQTTPAF--PGEKLPLH 240
Query: 205 RSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
S Q + G P G DAS ++T E+ IP + + G
Sbjct: 241 SSEEAQNLMGQSP-GLDASP------------------PASTHELTIPNDLIGCIIGRQG 281
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 282 TKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 334
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|351697348|gb|EHB00267.1| Poly(rC)-binding protein 3 [Heterocephalus glaber]
Length = 427
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 78/306 (25%), Positives = 121/306 (39%), Gaps = 72/306 (23%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC--------GSPHDEI 79
V RL+V + Q G L+G+GG + E+R +TGA ++V D P G+P D I
Sbjct: 173 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPNSTERAVTISGTP-DAI 230
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN-------GHSYLPPFPEMPPPPFRP 132
+Q + Q + + S + P RP P + G +Y P P
Sbjct: 231 IQCVK-----QICVVMLESPPKGATIPY-RPKPASTPVIFAGGQAYTIQGQYAIPHP--- 281
Query: 133 RHNPASPGSY-PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSER 191
+P + G Y PS + + HQ A P P FP G +
Sbjct: 282 --DPLAHGLYQPSAILQLTKL-----------HQLAMQQ--TPFPPLGQTNPAFP-GEKL 325
Query: 192 PGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVI 251
P H S Q + G P G DAS ++T E+ I
Sbjct: 326 PLHS----------SEEAQNLMGQSP-GLDASP------------------PASTHELTI 356
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
P + + G + ++ IRQ+SGA + + + G++E + ++GT + AQ LI+A
Sbjct: 357 PNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINAR 416
Query: 312 ILCGVT 317
+ VT
Sbjct: 417 LTSEVT 422
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 75 KMESKVSEGGL--NVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 126
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 127 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 159
>gi|149031922|gb|EDL86834.1| rCG50739, isoform CRA_c [Rattus norvegicus]
Length = 317
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/302 (23%), Positives = 124/302 (41%), Gaps = 37/302 (12%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPP------------FRPRHNPAS 138
A I +L E I N+ + PP P + + S
Sbjct: 70 KAFAMIIDKLEEDI---SSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 126
Query: 139 PGSYPSPVGPF--HSMDRGM---GPSQPFDHQAAFSHGMDPMVPPNSDRIPF-PYGSERP 192
G+ G +S +R + G Q + PP IP+ P S P
Sbjct: 127 TGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLESPPKGVTIPYRPKPSSSP 186
Query: 193 -----GHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTI 247
G + +S P G G ++SS P + +G A+ T T+
Sbjct: 187 VIFAGGQLTKLHQLAMQQSHFPMTHGNTGFSGIESSS---PEVKGYWAGLDASAQT-TSH 242
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + AQ L
Sbjct: 243 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYL 302
Query: 308 IH 309
I+
Sbjct: 303 IN 304
>gi|47213422|emb|CAF94921.1| unnamed protein product [Tetraodon nigroviridis]
Length = 381
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 70/313 (22%), Positives = 116/313 (37%), Gaps = 52/313 (16%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H G ++G G + E+R T SI++F + C D +V V G V
Sbjct: 85 RLLIHQSLAGSIIGVKGAKIKELRENTKTSIKLFQE----CCPQSTDRVVLVGGKMERVV 140
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHS--YLPPFPEMP------PPPFRPRHNPASP-GS 141
+ + +T+ + P G + Y P F + F R P G
Sbjct: 141 ECI--------KTMLELIVDAPIKGRAQPYDPNFYDETYEYGGFTVMFEERVGGRRPMGG 192
Query: 142 YPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP 201
+PS + F+ ++ G PM D P P H R
Sbjct: 193 FPSRSSRSSG------GDRGFERMSSSRGGRGPMPSSRRDYDDSPRRGPPPPHSSRASRG 246
Query: 202 PSPRSWTPQGVG--GGDPRGFDASSGFTPRNRPV-------------------ESGNHAA 240
S P G GGD R +D+ R++ + SG ++
Sbjct: 247 NSRGRNMPMGHSHRGGDDRYYDSYRSSDDRSKTLVMFKADLLSHFDNTPQLFCASGGRSS 306
Query: 241 ILT----STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
T +V IP+ + G+ + IR SGA + +++P G+ + ++ ++G
Sbjct: 307 YSDIGGPVVTTQVTIPKDLAGSIIGKGGQRIKQIRHDSGAAIKIDEPLEGSEDRIITITG 366
Query: 297 TSDQMRAAQSLIH 309
T DQ++ AQ L+
Sbjct: 367 TQDQIQNAQFLLQ 379
>gi|357507881|ref|XP_003624229.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355499244|gb|AES80447.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 275
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GA I V Q P C S H D +VQ+ G+ +
Sbjct: 196 RLLIAGSQAGGLIGMSGQNIEKLRNSSGAMITVLAPSQLPLCASAHESDRVVQLSGDVST 255
Query: 89 VQDALFHITSRLR 101
V AL I +LR
Sbjct: 256 VMKALEEIGCQLR 268
>gi|354490193|ref|XP_003507244.1| PREDICTED: poly(rC)-binding protein 2 isoform 2 [Cricetulus
griseus]
Length = 331
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/283 (23%), Positives = 107/283 (37%), Gaps = 63/283 (22%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
GF +P + +G A+ T T+ E+ IP + + G +
Sbjct: 229 ------------GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAK 275
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + +P G+T+ V ++G++ + AQ LI+
Sbjct: 276 INEIRQMSGAQIKTANPVEGSTDRQVTITGSAASISLAQYLIN 318
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|209156062|gb|ACI34263.1| PolyrC-binding protein 2 [Salmo salar]
Length = 318
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/284 (23%), Positives = 109/284 (38%), Gaps = 76/284 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R++V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F A G + P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PFP G PG
Sbjct: 205 ----------QPDLTKLHQLAMQQS------------PFPMGPNNPGF------------ 230
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
QG G DAS+ ++ +H E+ IP + + G S
Sbjct: 231 ---QG-------GMDASA---------QTSSH---------EMTIPNDLIGCIIGRQGSK 262
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G+ + V ++G++ + A+ LI+A
Sbjct: 263 INEIRQMSGAQIKIANPVEGSADRQVTITGSAASISLAEYLINA 306
>gi|443685583|gb|ELT89137.1| hypothetical protein CAPTEDRAFT_171528 [Capitella teleta]
Length = 398
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 21/121 (17%)
Query: 14 HSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG 73
+ R ++ FE R L+H Q GC++GRGG+ + E+R TGA I+V+ + C
Sbjct: 94 YKRFKDLEFE----CEMRWLIHQSQAGCVIGRGGNKIKELRDETGAQIKVYSQ-----CA 144
Query: 74 -SPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS--YLP-PFPEMPPPP 129
+ IVQ+ G V ++L TIF + + P G + Y P F E P
Sbjct: 145 PQSSERIVQLTGKPRVVVNSL--------ATIFDLLQTAPPKGFNNPYDPNNFDEFYAPE 196
Query: 130 F 130
+
Sbjct: 197 Y 197
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
+V IP+ + G+ S + IRQ SGA + +++P G+ + ++ ++G+ DQ++ AQ L
Sbjct: 327 QVSIPKDLAGAIIGKGGSRIRQIRQESGAGINIDEPMQGSQDRIITITGSQDQIQNAQYL 386
Query: 308 IH 309
+
Sbjct: 387 LQ 388
>gi|209148569|gb|ACI32944.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 443
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 64/138 (46%), Gaps = 19/138 (13%)
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTP-----QGVGGGDPRGFDASSGFTPRNRPVESGNHA 239
+ Y S R G DR S R P +GGG G+D SS + +SG A
Sbjct: 309 YSYDSYR---GSADDRQNSDRRGRPGDRYGDNMGGG---GYDNSSSWNS----YQSGGRA 358
Query: 240 AILTS----TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
+ T +V IP+ + G+ + IR SGA++ +++P G+ + ++ +S
Sbjct: 359 SYNDMGGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITIS 418
Query: 296 GTSDQMRAAQSLIHAFIL 313
GT DQ++ AQ L+ L
Sbjct: 419 GTQDQIQNAQYLLQNSAL 436
>gi|195042483|ref|XP_001991440.1| GH12054 [Drosophila grimshawi]
gi|193901198|gb|EDW00065.1| GH12054 [Drosophila grimshawi]
Length = 611
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 371 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 430
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 431 PPSGGDEETPVHIIGQFYSVQSAQRRIRAMMLST 464
>gi|62087230|dbj|BAD92062.1| poly(rC)-binding protein 2 isoform b variant [Homo sapiens]
Length = 373
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 124/312 (39%), Gaps = 89/312 (28%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 110 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 165
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 166 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 200
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 201 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 238
Query: 208 TPQGV-------------------------GGGDPRGFDASS----GFTPRNRPVESGNH 238
T QG G G ++SS G+ + ++ +H
Sbjct: 239 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSH 298
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++
Sbjct: 299 ---------ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 349
Query: 299 DQMRAAQSLIHA 310
+ AQ LI+
Sbjct: 350 ASISLAQYLINV 361
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G
Sbjct: 25 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPT 77
Query: 87 HSVQDALFHITSRLRETI 104
+++ A I +L E I
Sbjct: 78 NAIFKAFAMIIDKLEEDI 95
>gi|193083110|ref|NP_001122384.1| poly(rC)-binding protein 2 isoform e [Homo sapiens]
gi|291389255|ref|XP_002711064.1| PREDICTED: poly(rC) binding protein 2-like isoform 1 [Oryctolagus
cuniculus]
gi|348581079|ref|XP_003476305.1| PREDICTED: poly(rC)-binding protein 2 isoform 3 [Cavia porcellus]
gi|184186908|gb|ACC69194.1| poly(rC) binding protein 2 [Mus musculus]
gi|208967068|dbj|BAG73548.1| poly(rC) binding protein 2 [synthetic construct]
Length = 361
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 124/311 (39%), Gaps = 89/311 (28%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQGV-------------------------GGGDPRGFDASS----GFTPRNRPVESGNH 238
T QG G G ++SS G+ + ++ +H
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSH 286
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++
Sbjct: 287 ---------ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 337
Query: 299 DQMRAAQSLIH 309
+ AQ LI+
Sbjct: 338 ASISLAQYLIN 348
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|341894976|gb|EGT50911.1| hypothetical protein CAEBREN_13773 [Caenorhabditis brenneri]
Length = 397
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 72/285 (25%), Positives = 106/285 (37%), Gaps = 32/285 (11%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSV 89
R+L+H G L+GR G + E+R A +++F C D ++ G +V
Sbjct: 128 RMLIHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTDRVLITSGEQKNV 182
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPA--SPGSYPSPVG 147
+ + L+E P+K + YLP F P P S G P+ G
Sbjct: 183 LAIIEEVMRELKE--IPIK----GSATPYLPSFHYDPSNISEYGGFPGTMSSGGPPNSRG 236
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P P P + A + G P D F G P G + P P
Sbjct: 237 PSQQRGGQGPPGGPRSYGGAVTPGGGPRSFEAGDFQQFRGG---PVQGYAMNAPGYP--- 290
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
QG GG P P N G TT +V IP + G +
Sbjct: 291 PQQGQFGGAP----------PANTGYGYGPGGGGPV-TTAQVTIPSDLGGTIIGRGGERI 339
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ IRQ SGA + + +P G E ++ + GT Q+ +AQ L+ +
Sbjct: 340 ARIRQDSGAQITL-EPSNGQPERIITIKGTEQQIHSAQYLLQQCV 383
>gi|334350025|ref|XP_003342306.1| PREDICTED: poly(rC)-binding protein 2-like [Monodelphis domestica]
gi|444513888|gb|ELV10473.1| Poly(rC)-binding protein 2 [Tupaia chinensis]
Length = 307
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 105/283 (37%), Gaps = 76/283 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G G DAS+ +T+ E+ IP + + G +
Sbjct: 229 --------GFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQGAK 262
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 263 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 305
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|357479529|ref|XP_003610050.1| Poly(rC)-binding protein [Medicago truncatula]
gi|355511105|gb|AES92247.1| Poly(rC)-binding protein [Medicago truncatula]
Length = 431
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA--------RLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DA++R+ R++ + A RLLV S Q L+G+ G + ++
Sbjct: 104 SPAMDAILRIFKRVSGLSETDNNNTAAAGVALCSIRLLVASTQAINLIGKQGSSIKAIQE 163
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
TGA IRV D+ P + I+ + G V AL + LR+
Sbjct: 164 NTGAVIRVLSGDELPSYAGADERIIDLQGETLKVLKALEAVVGHLRK 210
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
A+I+T+ + IP Y + G +N+ +IR+ SGA + V + + E +V + GTS
Sbjct: 303 ASIVTTVIQTMQIPLSYAEDIIGIQGTNIDYIRRTSGAILTVQESRV-PDEIIVEIKGTS 361
Query: 299 DQMRAAQSLIHAFI 312
Q++ AQ LI I
Sbjct: 362 TQVQTAQQLIQEVI 375
>gi|15236094|ref|NP_194330.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|4538929|emb|CAB39665.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|7269451|emb|CAB79455.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|15810499|gb|AAL07137.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|20466386|gb|AAM20510.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|21280915|gb|AAM45112.1| putative nucleic acid binding protein [Arabidopsis thaliana]
gi|332659742|gb|AEE85142.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 495
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 4 SPAQDAVMRVHSRIAEI------GFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA DAV+RV R++ + + +V + RLLV S Q L+G+ G ++ +
Sbjct: 134 SPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVE 193
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+GAS+R+ +++ P + + IV + G + AL I LR
Sbjct: 194 NSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAIVGHLR 239
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+A +T + + IP Y + G +N+++IR+ SGA + + + P + V + GT+
Sbjct: 335 SAFVTQVSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKE-SPHPDQITVEIKGTT 393
Query: 299 DQMRAAQSLIHAFIL 313
Q++ A+ LI FI+
Sbjct: 394 SQVQTAEQLIQEFII 408
>gi|226470354|emb|CAX70457.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 370
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C S D ++Q++G
Sbjct: 80 EGVDLRLLVHYSQAGCVIGRGGYKIKELREQSGLHTLKVYQM----LCPSSTDRVIQLVG 135
Query: 85 NYHSVQDALFHITSRL 100
+ V + L I L
Sbjct: 136 DVGKVLNCLQSIAELL 151
>gi|193083114|ref|NP_001122386.1| poly(rC)-binding protein 2 isoform g [Homo sapiens]
gi|73996231|ref|XP_857798.1| PREDICTED: poly(rC)-binding protein 2 isoform 15 [Canis lupus
familiaris]
gi|291389261|ref|XP_002711067.1| PREDICTED: poly(rC) binding protein 2-like isoform 4 [Oryctolagus
cuniculus]
gi|338726296|ref|XP_003365293.1| PREDICTED: poly(rC)-binding protein 2 [Equus caballus]
gi|426224374|ref|XP_004006346.1| PREDICTED: poly(rC)-binding protein 2 isoform 4 [Ovis aries]
gi|119617117|gb|EAW96711.1| poly(rC) binding protein 2, isoform CRA_f [Homo sapiens]
Length = 318
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 105/283 (37%), Gaps = 76/283 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G G DAS+ +T+ E+ IP + + G +
Sbjct: 229 --------GFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQGAK 262
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 263 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 305
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|393905262|gb|EJD73914.1| hypothetical protein LOAG_18700 [Loa loa]
Length = 228
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q GC++G+GG + E+R ATGASI+V + P S + V + G+
Sbjct: 83 ITMRLIVPATQCGCIIGKGGSKIKEIREATGASIQV-ASEMLP---SSTERAVTISGSAD 138
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP 132
S+ D + +I L E P G++ P P P F P
Sbjct: 139 SIVDCMRNICQILLE--------APAKGNT----LPYRPKPTFNP 171
>gi|260814700|ref|XP_002602052.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
gi|229287357|gb|EEN58064.1| hypothetical protein BRAFLDRAFT_127356 [Branchiostoma floridae]
Length = 499
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V IP+ + G S + IR+ S A + +++P PG+T+ ++ +SG +DQ+R A
Sbjct: 408 TSTQVTIPKELAGSIIGRGGSRIRTIRERSEAQIKIDEPLPGSTDRIITISGDNDQIRNA 467
Query: 305 QSLIH 309
Q L+
Sbjct: 468 QFLLQ 472
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66
R+LVH Q GC++GR G + E+R T A+I+V+ +
Sbjct: 128 RMLVHQSQAGCIIGRAGFKIKELREQTEANIKVYSE 163
>gi|224137186|ref|XP_002327061.1| predicted protein [Populus trichocarpa]
gi|222835376|gb|EEE73811.1| predicted protein [Populus trichocarpa]
Length = 357
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH--DEIVQVIGNYHS 88
RLL+ Q G L+G G + ++R ++GA I V +Q P C S + D +VQ+ G+
Sbjct: 154 RLLIAGSQAGSLIGMSGQNIVKLRNSSGAMITVLAPNQLPLCASAYESDRVVQISGDVPV 213
Query: 89 VQDALFHITSRLRE 102
V AL I +LRE
Sbjct: 214 VLKALEEIGCQLRE 227
>gi|363747267|ref|XP_423701.3| PREDICTED: poly(rC)-binding protein 2-like isoform 4 [Gallus
gallus]
Length = 307
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 65/283 (22%), Positives = 105/283 (37%), Gaps = 76/283 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F G Y P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAMQQSHFPM-----------------SHGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G G DAS+ +T+ E+ IP + + G +
Sbjct: 229 --------GFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQGAK 262
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 263 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 305
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|226485615|emb|CAX75227.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C S D ++Q++G
Sbjct: 7 EGVDLRLLVHYSQAGCVIGRGGYKIKELREQSGLHTLKVYQM----LCPSSTDRVIQLVG 62
Query: 85 NYHSVQDALFHITSRL 100
+ V + L I L
Sbjct: 63 DVGKVLNCLQSIAELL 78
>gi|226485617|emb|CAX75228.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C S D ++Q++G
Sbjct: 7 EGVDLRLLVHYSQAGCVIGRGGYKIKELREQSGLHTLKVYQM----LCPSSTDRVIQLVG 62
Query: 85 NYHSVQDALFHITSRL 100
+ V + L I L
Sbjct: 63 DVGKVLNCLQSIAELL 78
>gi|148672030|gb|EDL03977.1| poly(rC) binding protein 2, isoform CRA_d [Mus musculus]
Length = 316
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 63/282 (22%), Positives = 107/282 (37%), Gaps = 76/282 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ++ P P+ P+RP+ P S P
Sbjct: 154 SIIECVKQIC------VVMLESP------------PKGVTIPYRPK-----PSSSPVIFA 190
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
G HQ A PM N+ G P W
Sbjct: 191 ---------GGQLTKLHQLAMQQSHFPMTHGNTGF-----------SGIESSSPEVKGYW 230
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
G DAS+ +T+ E+ IP + + G + +
Sbjct: 231 -----------GLDASA------------------QTTSHELTIPNDLIGCIIGRQGAKI 261
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 262 NEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLIN 303
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|226485613|emb|CAX75226.1| Heterogeneous nuclear ribonucleoprotein K [Schistosoma japonicum]
Length = 297
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C S D ++Q++G
Sbjct: 7 EGVDLRLLVHYSQAGCVIGRGGYKIKELREQSGLHTLKVYQM----LCPSSTDRVIQLVG 62
Query: 85 NYHSVQDALFHITSRL 100
+ V + L I L
Sbjct: 63 DVGKVLNCLQSIAELL 78
>gi|295120371|gb|ADF77083.1| CG1691 [Drosophila melanogaster]
Length = 99
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 2 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 61
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 62 PTSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 95
>gi|193848519|gb|ACF22709.1| hypothetical protein-2 [Brachypodium distachyon]
Length = 429
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 2 RHSPAQDAVMRVHSRIAEI--GFEPGQ-AVVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
+HS Q A++ + R+ E+ G+ AR+LV Q L+G GG I+ EM ++TG
Sbjct: 338 KHSKVQSAILCIFDRMEEVERNLMFGKPECSARVLVPKSQFSSLVGLGGAIIKEMVKSTG 397
Query: 59 ASIRVFPKDQAPRCGSPHDEIVQ 81
A I + + P C S + ++Q
Sbjct: 398 ARIEILDEMDVPACASNCERVLQ 420
>gi|402590061|gb|EJW83992.1| hypothetical protein WUBG_05097, partial [Wuchereria bancrofti]
Length = 210
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q GC++G+GG + E+R ATGASI+V + P S + V + G+
Sbjct: 72 ITMRLIVPATQCGCIIGKGGTKIKEIREATGASIQV-ASEMLP---SSTERAVTISGSAD 127
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP 132
S+ D + +I L E P G++ P P P F P
Sbjct: 128 SIVDCMRNICQILLE--------APPKGNT----LPYRPKPTFNP 160
>gi|25012807|gb|AAN71494.1| RE72930p [Drosophila melanogaster]
Length = 580
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 378 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 437
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 438 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 471
>gi|24641097|ref|NP_727451.1| IGF-II mRNA-binding protein, isoform D [Drosophila melanogaster]
gi|24641099|ref|NP_727452.1| IGF-II mRNA-binding protein, isoform E [Drosophila melanogaster]
gi|24641101|ref|NP_727453.1| IGF-II mRNA-binding protein, isoform F [Drosophila melanogaster]
gi|24641103|ref|NP_727454.1| IGF-II mRNA-binding protein, isoform G [Drosophila melanogaster]
gi|24641105|ref|NP_727455.1| IGF-II mRNA-binding protein, isoform H [Drosophila melanogaster]
gi|22832052|gb|AAN09269.1| IGF-II mRNA-binding protein, isoform D [Drosophila melanogaster]
gi|22832053|gb|AAN09270.1| IGF-II mRNA-binding protein, isoform E [Drosophila melanogaster]
gi|22832054|gb|AAN09271.1| IGF-II mRNA-binding protein, isoform F [Drosophila melanogaster]
gi|22832055|gb|AAN09272.1| IGF-II mRNA-binding protein, isoform G [Drosophila melanogaster]
gi|22832056|gb|AAN09273.1| IGF-II mRNA-binding protein, isoform H [Drosophila melanogaster]
Length = 573
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 371 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 430
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 431 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 464
>gi|281360685|ref|NP_001162717.1| IGF-II mRNA-binding protein, isoform J [Drosophila melanogaster]
gi|272506050|gb|ACZ95252.1| IGF-II mRNA-binding protein, isoform J [Drosophila melanogaster]
gi|383873394|gb|AFH55503.1| FI20063p1 [Drosophila melanogaster]
Length = 580
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 378 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 437
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 438 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 471
>gi|158293685|ref|XP_557579.3| AGAP004942-PA [Anopheles gambiae str. PEST]
gi|157016566|gb|EAL40201.3| AGAP004942-PA [Anopheles gambiae str. PEST]
Length = 382
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 119/290 (41%), Gaps = 50/290 (17%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RL+V + Q G L+G+GG + E+R TG SI+V + P + + V + G+ ++
Sbjct: 109 RLIVPASQCGSLIGKGGSKIKEIREITGCSIQV-ASEMLP---NSTERAVTLSGSAEAIT 164
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFH 150
++HI + E+ P G + P+RP+ P G G +
Sbjct: 165 QCIYHICCVMLES--------PPKGATI----------PYRPK--PQVNGPVIVANGQAY 204
Query: 151 SMDRGMG-PSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFD-RPPSPRSWT 208
++ P+Q A +P+ + + S G PT P+ +
Sbjct: 205 TIQGNYAVPAQEVSGIAK-----NPLAGLAALGLAGAIPSNTGGLNPTGKYSSPNALEYI 259
Query: 209 PQGVGGGDPRGFDASSGFTPRNR---PVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
P S T NR PV+S +H E+ +P + + G+ +
Sbjct: 260 PHAALA----ALAGSQLRTNNNRNVAPVQSQSH---------EMTVPNDLIGCIIGKGGT 306
Query: 266 NLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIHAFI 312
++ IRQISGA + +++ + G T+ + ++G D + AQ LI+ I
Sbjct: 307 KIAEIRQISGAMIRISNCEERDSGNTDRTITITGNPDSVALAQYLINMRI 356
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 12/98 (12%)
Query: 7 QDAVMRVHSRIAEIGF--EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
+DA M +I +I +P + RL++ +++G ++G+ G IV R +GA I +
Sbjct: 2 EDAKM---VKIGDINLSDDPAVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINI- 57
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
C P + IV V G+ ++ A IT + E
Sbjct: 58 -----SDCSCP-ERIVTVSGSRSAIYKAFTLITKKFEE 89
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P Q+ + V + IGC++G+GG ++E+R+ +GA IR+ ++ R D + +
Sbjct: 282 PVQSQSHEMTVPNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--RDSGNTDRTITIT 339
Query: 84 GNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
GN SV A + I R+ M P G+ Y+ P
Sbjct: 340 GNPDSVALAQYLINMRISMETAGMPIP----GYHYITP 373
>gi|405977635|gb|EKC42074.1| Poly(rC)-binding protein 3 [Crassostrea gigas]
Length = 439
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 114/286 (39%), Gaps = 45/286 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R TGASI+V + P + + V V G
Sbjct: 92 VTLRLVVPASQCGSLIGKGGSKIKEIRETTGASIQV-ASEMLP---NSTERAVTVSGTAD 147
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
++ + +I S + E+ P P P +PP F PG
Sbjct: 148 AITLCIQNICSIMLES-------PPKGATIQYRPKPVVPPVIFAGGQAYTVPGQM----- 195
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP-PSPRS 206
+G+ S+ +R+ P H + +P P
Sbjct: 196 ------QGVQASE-------------------KERLGIPKMELSKLHQLSLGQPIPIIPC 230
Query: 207 WTPQGVGGGDPRGFDASSGFTPR--NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
+PQ + P G + PR N ++ TT E+ IP + + G
Sbjct: 231 TSPQLIQATMP-GLPHMAAAYPRATNTVPQALPAQPQQQQTTTEMAIPNDLIGCIIGRGG 289
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + +++ + GA + V ++GT + + AQ LI+
Sbjct: 290 QKINEIRQMSGAMIKISNAEEGAPDRKVTITGTPETIGLAQYLINT 335
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
IGC++GRGG ++E+R+ +GA I++ ++ G+P D V + G ++ A + I +
Sbjct: 281 IGCIIGRGGQKINEIRQMSGAMIKISNAEE----GAP-DRKVTITGTPETIGLAQYLINT 335
Query: 99 RLR 101
+
Sbjct: 336 SME 338
>gi|386764191|ref|NP_001245616.1| IGF-II mRNA-binding protein, isoform L [Drosophila melanogaster]
gi|383293324|gb|AFH07330.1| IGF-II mRNA-binding protein, isoform L [Drosophila melanogaster]
Length = 638
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 436 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 495
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 496 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 529
>gi|17530887|ref|NP_511111.1| IGF-II mRNA-binding protein, isoform A [Drosophila melanogaster]
gi|24641108|ref|NP_727456.1| IGF-II mRNA-binding protein, isoform B [Drosophila melanogaster]
gi|24641110|ref|NP_727457.1| IGF-II mRNA-binding protein, isoform C [Drosophila melanogaster]
gi|7533029|gb|AAF63331.1|AF241237_1 IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|17862978|gb|AAL39966.1| SD07045p [Drosophila melanogaster]
gi|22832057|gb|AAF47958.2| IGF-II mRNA-binding protein, isoform A [Drosophila melanogaster]
gi|22832058|gb|AAN09274.1| IGF-II mRNA-binding protein, isoform B [Drosophila melanogaster]
gi|22832059|gb|AAN09275.1| IGF-II mRNA-binding protein, isoform C [Drosophila melanogaster]
gi|220947510|gb|ACL86298.1| Imp-PA [synthetic construct]
gi|220956906|gb|ACL90996.1| Imp-PA [synthetic construct]
Length = 566
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 364 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 423
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 424 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 457
>gi|195350752|ref|XP_002041902.1| GM11285 [Drosophila sechellia]
gi|194123707|gb|EDW45750.1| GM11285 [Drosophila sechellia]
Length = 566
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 364 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 423
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 424 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 457
>gi|195401727|ref|XP_002059464.1| GJ17213 [Drosophila virilis]
gi|194142470|gb|EDW58876.1| GJ17213 [Drosophila virilis]
Length = 511
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
D+ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 74 DSTLEIITEMLKYFEERDEEFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 133
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
AP+ D +VQ +G V DA+ + + R+T P+K P
Sbjct: 134 VAPQS---TDRVVQTVGKQSQVIDAVREVITLTRDT--PIKGP 171
>gi|194762728|ref|XP_001963486.1| GF20264 [Drosophila ananassae]
gi|190629145|gb|EDV44562.1| GF20264 [Drosophila ananassae]
Length = 590
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 371 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 430
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 431 PPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 464
>gi|386764188|ref|NP_001036268.2| IGF-II mRNA-binding protein, isoform K [Drosophila melanogaster]
gi|383293323|gb|ABI30974.2| IGF-II mRNA-binding protein, isoform K [Drosophila melanogaster]
Length = 631
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 429 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 488
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 489 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 522
>gi|195566105|ref|XP_002106631.1| Imp [Drosophila simulans]
gi|194204013|gb|EDX17589.1| Imp [Drosophila simulans]
Length = 204
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 2 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 61
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 62 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 95
>gi|432866565|ref|XP_004070866.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 318
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/283 (22%), Positives = 113/283 (39%), Gaps = 74/283 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R + GA ++V D P + + + V G
Sbjct: 98 VTMRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQV-AGDMLP---NSTERAITVAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I I ++ P P+ P+RP+ P G
Sbjct: 154 SIIECVKQIC------IVMLESP------------PKGVTIPYRPK-----------PSG 184
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P QA G + P+ ++ H + P P +
Sbjct: 185 S---------PVIFAGGQAYAVQGQHAIPQPDLTKL----------HQLAMQQSPFPIAH 225
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
+ QG G DAS+ ++G+H E+ IP + + G + +
Sbjct: 226 SNQGF----QAGMDASA---------QTGSH---------ELTIPNDLIGCIIGRQGAKI 263
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ IRQ+SGA + + +P G+T+ V ++G+ + A+ LI+A
Sbjct: 264 NEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 306
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G S+
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTTSIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFSMIIEKLEEDI 83
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 21 GFEPGQAVVAR-----LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
GF+ G A+ L + + IGC++GR G ++E+R+ +GA I++ P GS
Sbjct: 229 GFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGST 284
Query: 76 HDEIVQVIGNYHSVQDALFHITSRL 100
D V + G++ S+ A + I +RL
Sbjct: 285 -DRQVTITGSHASISLAEYLINARL 308
>gi|194889982|ref|XP_001977205.1| GG18899 [Drosophila erecta]
gi|190648854|gb|EDV46132.1| GG18899 [Drosophila erecta]
Length = 568
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF 64
A + ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++
Sbjct: 360 KAQFMIFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLP 419
Query: 65 PKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP G + V +IG ++SVQ A I + + T
Sbjct: 420 EHALAPPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 458
>gi|195439130|ref|XP_002067484.1| GK16164 [Drosophila willistoni]
gi|194163569|gb|EDW78470.1| GK16164 [Drosophila willistoni]
Length = 587
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 371 IFEKMREEGFMCGTDDVRLTIELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 430
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 431 PPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 464
>gi|195481990|ref|XP_002101863.1| GE15370 [Drosophila yakuba]
gi|194189387|gb|EDX02971.1| GE15370 [Drosophila yakuba]
Length = 566
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 365 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 424
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 425 PPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 458
>gi|195394077|ref|XP_002055672.1| GJ18657 [Drosophila virilis]
gi|194150182|gb|EDW65873.1| GJ18657 [Drosophila virilis]
Length = 650
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 429 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 488
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 489 PPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 522
>gi|115482006|ref|NP_001064596.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|78708635|gb|ABB47610.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|113639205|dbj|BAF26510.1| Os10g0414700 [Oryza sativa Japonica Group]
gi|215693240|dbj|BAG88622.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222612825|gb|EEE50957.1| hypothetical protein OsJ_31513 [Oryza sativa Japonica Group]
Length = 586
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 19/151 (12%)
Query: 5 PAQDAVMRVHSRIAE---IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
PA DA++RV+ I + VVAR+L S+Q L+G G +++ +++A+ +I
Sbjct: 120 PAIDALLRVYECIINDDGLDVRYNNIVVARILTPSEQAASLIGDQGSVINYIKKASKTNI 179
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE-----TIFPMKRPGPNNGH 116
V D P D I+++ G V AL + LR+ ++ P+ P H
Sbjct: 180 HVIDGDLPP-VALEDDMIIEIWGLPARVHQALELVACHLRKYLVHRSVIPLFDP-----H 233
Query: 117 SYLPPFP-EMPPPPFRPRHN----PASPGSY 142
+P P +MPP + H ASPG Y
Sbjct: 234 VSIPISPVDMPPFHYSDHHEGLLHEASPGYY 264
>gi|255645221|gb|ACU23108.1| unknown [Glycine max]
Length = 208
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 225 GFTPRNRPVESGNHAA--------ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276
G + R G HA+ I+T T ++ IP Y V G +++S+IR+ SGA
Sbjct: 56 GISAYGRDASIGVHASSNTQSAPSIVTQITQQMQIPLSYADAVIGTAGASISYIRRASGA 115
Query: 277 NVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
V + + + E V +SGT+ Q++ AQ LI F+
Sbjct: 116 TVTIQEARGVPGEMTVEISGTASQVQTAQQLIQNFM 151
>gi|159153716|gb|ABW93366.1| IGF-II mRNA-binding protein [Drosophila simulans]
gi|159153718|gb|ABW93367.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153720|gb|ABW93368.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153722|gb|ABW93369.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153724|gb|ABW93370.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153726|gb|ABW93371.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153728|gb|ABW93372.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153730|gb|ABW93373.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153732|gb|ABW93374.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153734|gb|ABW93375.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153736|gb|ABW93376.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153738|gb|ABW93377.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|159153740|gb|ABW93378.1| IGF-II mRNA-binding protein [Drosophila melanogaster]
gi|295120363|gb|ADF77079.1| CG1691 [Drosophila melanogaster]
gi|295120365|gb|ADF77080.1| CG1691 [Drosophila melanogaster]
gi|295120367|gb|ADF77081.1| CG1691 [Drosophila melanogaster]
gi|295120369|gb|ADF77082.1| CG1691 [Drosophila melanogaster]
gi|295120373|gb|ADF77084.1| CG1691 [Drosophila melanogaster]
gi|295120375|gb|ADF77085.1| CG1691 [Drosophila melanogaster]
gi|295120377|gb|ADF77086.1| CG1691 [Drosophila melanogaster]
Length = 99
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 2 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 61
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 62 PPSGGDEETPVHIIGLFYSVQSAQRRIRAMMLST 95
>gi|356536806|ref|XP_003536925.1| PREDICTED: poly(rC)-binding protein 1-like [Glycine max]
Length = 561
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 231 RPVESGNH---AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
R V G H A S T + IP Y V G + +N+S+IR+ SGA++ + + +
Sbjct: 420 RDVSMGIHSSSAQAQQSVTQHMQIPLSYADAVIGASGANISYIRRASGASITIQETRGVP 479
Query: 288 TEGVVMVSGTSDQMRAAQSLIHAFI 312
E V +SGT+ Q++AAQ L+ F+
Sbjct: 480 GEMTVEISGTASQIQAAQQLVQNFM 504
>gi|195131533|ref|XP_002010205.1| GI15803 [Drosophila mojavensis]
gi|193908655|gb|EDW07522.1| GI15803 [Drosophila mojavensis]
Length = 596
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 362 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 421
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
P G + V +IG ++SVQ A I + + T
Sbjct: 422 PPSGGDEETPVHIIGPFYSVQSAQRRIRAMMLST 455
>gi|242038781|ref|XP_002466785.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
gi|241920639|gb|EER93783.1| hypothetical protein SORBIDRAFT_01g014200 [Sorghum bicolor]
Length = 430
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 4 SPAQDAVMRVHSRIAEIGF-EPGQAVVA-------RLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA D ++RVH RI + E GQ + RLLV S Q G L+G+ G + ++
Sbjct: 181 SPAVDGLLRVHKRITDSSNGESGQLQRSAGNIGPTRLLVPSSQAGSLIGKQGATIKSIQD 240
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
++ + +R+ + P D +V++ G VQ A+ I S LR+ +
Sbjct: 241 SSKSVVRIV--ENVPPVALNDDRVVEIQGEPLGVQKAVELIASHLRKFLV 288
>gi|410900025|ref|XP_003963497.1| PREDICTED: poly(rC)-binding protein 2-like [Takifugu rubripes]
Length = 318
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 113/283 (39%), Gaps = 74/283 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R + GA ++V D P + + + + G
Sbjct: 98 VTIRLVVPASQCGSLIGKGGCKIKEIRESAGAQVQV-AGDMLP---NSTERAITIAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P G
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK-----------PSG 184
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
P QA G + P+ ++ H + P P +
Sbjct: 185 S---------PVIFAGGQAYAVQGQHAIPQPDLTKL----------HQLAMQQSPFPIAH 225
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
+ QG G DAS+ ++G+H E+ IP + + G + +
Sbjct: 226 SNQGF----QAGMDASA---------QTGSH---------ELTIPNDLIGCIIGRQGAKI 263
Query: 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+ IRQ+SGA + + +P G+T+ V ++G+ + A+ LI+A
Sbjct: 264 NEIRQMSGAQIKIANPVEGSTDRQVTITGSHASISLAEYLINA 306
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 21 GFEPGQAVVAR-----LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
GF+ G A+ L + + IGC++GR G ++E+R+ +GA I++ P GS
Sbjct: 229 GFQAGMDASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGST 284
Query: 76 HDEIVQVIGNYHSVQDALFHITSRL 100
D V + G++ S+ A + I +RL
Sbjct: 285 -DRQVTITGSHASISLAEYLINARL 308
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G S+
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTTSIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFSMIIEKLEEDI 83
>gi|256083131|ref|XP_002577803.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230295|emb|CCD76466.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 322
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIGN 85
V RLLVH Q GC++GR G+ + E+R +G +++V+ C D ++Q++G+
Sbjct: 81 GVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQM----LCPCSTDRVIQLVGD 136
Query: 86 YHSVQDALFHITSRL 100
V D L I L
Sbjct: 137 VGKVLDCLRSIAELL 151
>gi|256083129|ref|XP_002577802.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230296|emb|CCD76467.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 368
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIGN 85
V RLLVH Q GC++GR G+ + E+R +G +++V+ C D ++Q++G+
Sbjct: 81 GVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQM----LCPCSTDRVIQLVGD 136
Query: 86 YHSVQDALFHITSRL 100
V D L I L
Sbjct: 137 VGKVLDCLRSIAELL 151
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 240 AILT-STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+ILT +T+ +V + + + G + ++ +R S A++ ++ +PG + ++ ++GT
Sbjct: 291 SILTPTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITGTP 350
Query: 299 DQMRAAQSLIHAF 311
+Q++ AQ L+ +
Sbjct: 351 EQIQNAQFLLQMW 363
>gi|383849051|ref|XP_003700160.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Megachile rotundata]
Length = 460
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+LVH Q GC++G+GG + E+R TGA I+++ + C D ++ + G
Sbjct: 124 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY----SHCCPHSTDRLISICGKPS 179
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNN 114
+ D + + + ++ + P+K G NN
Sbjct: 180 TCIDCIRELIATIKTS--PLK--GMNN 202
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Query: 230 NRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE 289
N GN + TST +V IP+ + G+ + + IR SGA + +++P PG+ +
Sbjct: 373 NNQGNQGNMGSNKTST--QVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSND 430
Query: 290 GVVMVSGTSDQMRAAQSLIHAFI 312
++ ++G Q++ AQ L+ +
Sbjct: 431 RIITITGLPSQIQMAQYLLQQSV 453
>gi|256083127|ref|XP_002577801.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230297|emb|CCD76468.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 363
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIGN 85
V RLLVH Q GC++GR G+ + E+R +G +++V+ C D ++Q++G+
Sbjct: 81 GVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQM----LCPCSTDRVIQLVGD 136
Query: 86 YHSVQDALFHITSRL 100
V D L I L
Sbjct: 137 VGKVLDCLRSIAELL 151
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 240 AILT-STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+ILT +T+ +V + + + G + ++ +R S A++ ++ +PG + ++ ++GT
Sbjct: 291 SILTPTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITGTP 350
Query: 299 DQMRAAQSLIH 309
+Q++ AQ L+
Sbjct: 351 EQIQNAQFLLQ 361
>gi|414589868|tpg|DAA40439.1| TPA: hypothetical protein ZEAMMB73_485730 [Zea mays]
Length = 116
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 229 RNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGAT 288
R PV N A T TT EV+IP Y+ V G N S + I ++SGA++ V+DPK G
Sbjct: 11 RKGPVAIENQVATPTGTT-EVIIPCNYIGFVCGNNGSEIEEIEKMSGASITVHDPKAGDA 69
Query: 289 EGVVMVSG 296
V++ G
Sbjct: 70 NSKVVICG 77
>gi|195029383|ref|XP_001987553.1| GH21981 [Drosophila grimshawi]
gi|193903553|gb|EDW02420.1| GH21981 [Drosophila grimshawi]
Length = 512
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
D+ + + + + + E RLL+H GC++G+GG + E+R G +
Sbjct: 74 DSTLEIITEMLKYFEERDDEFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 133
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
AP+ D +VQ +G V DA+ + + R+T P+K P H+Y P
Sbjct: 134 VAPQS---TDRVVQTVGKQTQVIDAVREVITLTRDT--PIKGP----IHNYDP 177
>gi|256083125|ref|XP_002577800.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230298|emb|CCD76469.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 371
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIGN 85
V RLLVH Q GC++GR G+ + E+R +G +++V+ C D ++Q++G+
Sbjct: 81 GVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQM----LCPCSTDRVIQLVGD 136
Query: 86 YHSVQDALFHITSRL 100
V D L I L
Sbjct: 137 VGKVLDCLRSIAELL 151
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 240 AILT-STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+ILT +T+ +V + + + G + ++ +R S A++ ++ +PG + ++ ++GT
Sbjct: 291 SILTPTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITGTP 350
Query: 299 DQMRAAQSLIHAFI 312
+Q++ AQ L+ +
Sbjct: 351 EQIQNAQFLLQMCV 364
>gi|193784719|dbj|BAG53872.1| unnamed protein product [Homo sapiens]
gi|193788384|dbj|BAG53278.1| unnamed protein product [Homo sapiens]
Length = 223
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 149 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 208
Query: 306 SLIH 309
L+
Sbjct: 209 YLLQ 212
>gi|256083133|ref|XP_002577804.1| heterogeneous nuclear ribonucleoprotein [Schistosoma mansoni]
gi|353230299|emb|CCD76470.1| putative heterogeneous nuclear ribonucleoprotein k [Schistosoma
mansoni]
Length = 298
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIGN 85
V RLLVH Q GC++GR G+ + E+R +G +++V+ C D ++Q++G+
Sbjct: 8 GVDLRLLVHQSQAGCVIGRAGYKIKELREQSGLHTLKVYQM----LCPCSTDRVIQLVGD 63
Query: 86 YHSVQDALFHITSRL 100
V D L I L
Sbjct: 64 VGKVLDCLRSIAELL 78
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/74 (22%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 240 AILT-STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
+ILT +T+ +V + + + G + ++ +R S A++ ++ +PG + ++ ++GT
Sbjct: 218 SILTPTTSTQVSVSNKMIGAIMGRSGCRINQVRHESNADIKISKQEPGVEDRIITITGTP 277
Query: 299 DQMRAAQSLIHAFI 312
+Q++ AQ L+ +
Sbjct: 278 EQIQNAQFLLQMCV 291
>gi|322708646|gb|EFZ00223.1| hypothetical protein MAA_04000 [Metarhizium anisopliae ARSEF 23]
Length = 456
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/294 (25%), Positives = 128/294 (43%), Gaps = 44/294 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D S + + V+G +V
Sbjct: 188 RLLIPHILIGSIIGKGGARIREIQEASGA--RLNASDSCLPMSS--ERSLVVMGVADAVH 243
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYL----PPFPEMP----PPPFRPRHNPASPGSY 142
A +++ S L E + +R G +Y P +P P+ P+ PAS G Y
Sbjct: 244 IATYYVGSTLLEQLN--ERFGGPAASAYATRSGAPAGSIPGGMQVVPYSPQ--PAS-GHY 298
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHG----PTF 198
P DR P + + H PPN +P YG ++ +G T
Sbjct: 299 GRPENYGRHQDRRAHHMPPATYPPHYPHNA---APPNP-AMPMQYGGQQAAYGGAPHATQ 354
Query: 199 DRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAH 258
PP PQ GG P+ P++ G LT ++ IP +
Sbjct: 355 HMPPH---VGPQPHGG-------------PQGPPMQHGMPGGPLTQ---QIFIPNDMVGA 395
Query: 259 VYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A ++++ +
Sbjct: 396 IIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMALYMLYSRL 449
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 61/156 (39%)
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
P P ++ PS+ D A +D ++ + +R + D
Sbjct: 6 PQPTSTKRPLEEASSPSRATDQPDAKRPALDKVIKNDEEREASESTIDVADKNGDEDGSK 65
Query: 203 SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGE 262
S + P GG D + AS+ + S + I VI A + G+
Sbjct: 66 SDQPDVPVTDGGSDTKAAGASNATASSDTAANSAAAHDETSWIHIRAVISSPEAATIIGK 125
Query: 263 NNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
N+S+IR++S A V+D + GA E ++ VSG +
Sbjct: 126 GGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIA 161
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 378 PGGPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTI 431
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 432 TGTEECNRMALYMLYSRLE 450
>gi|56753095|gb|AAW24757.1| SJCHGC01201 protein [Schistosoma japonicum]
Length = 270
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDEIVQVIG 84
+ V RLLVH Q GC++GRGG+ + E+R +G +++V+ C S D ++ ++G
Sbjct: 7 EGVDLRLLVHYSQAGCVIGRGGYKIKELREQSGLHTLKVYQM----LCPSSTDRVIHLVG 62
Query: 85 NYHSVQDALFHITSRL 100
+ V + L I L
Sbjct: 63 DVGKVLNCLQSIAELL 78
>gi|313151207|ref|NP_998159.2| heterogeneous nuclear ribonucleoprotein K [Danio rerio]
Length = 429
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 213 GGGDPRGFDASSGFTPRNRPVESGNHAAILTS--TTIEVVIPQLYMAHVYGENNSNLSHI 270
GG G+D++S + + +SG ++ T +V IP+ + G+ + I
Sbjct: 323 GGSMNDGYDSNSSW---DSSYQSGGRSSYSDGPVITTQVTIPKDLAGSIIGKGGQRIKQI 379
Query: 271 RQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313
R SGA++ +++P G+ + ++ ++GT DQ++ AQ L+ L
Sbjct: 380 RHESGASIKIDEPLQGSEDRIITITGTQDQIQNAQYLLQNSAL 422
>gi|195119576|ref|XP_002004307.1| GI19683 [Drosophila mojavensis]
gi|193909375|gb|EDW08242.1| GI19683 [Drosophila mojavensis]
Length = 509
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
D+ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 74 DSTLEIITEMLKYFEERDEEYDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 133
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
AP+ D +VQ +G V +A+ + + R+T P+K P H+Y P
Sbjct: 134 VAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT--PIKGP----IHNYDP 177
>gi|110349919|emb|CAJ19273.1| putative RNA binding protein [Solanum commersonii]
Length = 184
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
G DAS G +P +S I++ T + IP Y V G + SN+S+IR+ SGA +
Sbjct: 95 GRDASVGAHGNAQPQQS-----IVSKVTQNIQIPLSYADAVIGASGSNISYIRRASGATI 149
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
V + + E V ++G++ Q++ AQ L+
Sbjct: 150 AVQETRGVPGEMTVEINGSASQVQTAQQLVQ 180
>gi|268567874|ref|XP_002640100.1| Hypothetical protein CBG12588 [Caenorhabditis briggsae]
Length = 398
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 109/298 (36%), Gaps = 57/298 (19%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSV 89
R+L+H G L+GR G + E+R A +++F C D ++ G +V
Sbjct: 128 RVLIHQSHAGALIGRNGTKIKELREKCSARLKIFTG-----CAPGSTDRVLITSGEQKNV 182
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPV--- 146
+ + L+E P+K + YLP F P N + G +P V
Sbjct: 183 LAIIEEVMKELKE--IPIK----GSATPYLPSFHYDPS-------NISEYGGFPGNVSGG 229
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGP---------T 197
GP ++ S+G G+ PG GP
Sbjct: 230 GPQNNRGPAPPRGGQGPPGGPRSYG----------------GAITPGGGPRSFEAGDFHQ 273
Query: 198 FDRPPSPRSWTPQ--GVGGGDPRG-FDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQL 254
F P P ++ G G P+G F A P N TT +V IP
Sbjct: 274 FRGGPVPGQYSMNAPGYAQGPPQGQFGA-----PAN-AGYGYGPGGGGPVTTAQVTIPSD 327
Query: 255 YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ G ++ IRQ SGA + + +P G E ++ + GT Q+ +AQ L+ +
Sbjct: 328 LGGTIIGRGGERIARIRQESGAQITL-EPSNGQPERIITIKGTEQQIHSAQYLLQQCV 384
>gi|296213265|ref|XP_002753197.1| PREDICTED: poly(rC)-binding protein 2-like isoform 1 [Callithrix
jacchus]
Length = 342
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 104/284 (36%), Gaps = 76/284 (26%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V L+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLSLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + + IF + P G + P P P F G Y P
Sbjct: 154 SIIECV--------KQIFVVMLESPPKGVTIPYRPKPSSSPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PM HG T
Sbjct: 205 ----------QPDLTKLHQLAIQQSHFPMT-----------------HGNT--------- 228
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
G G DAS+ +T+ E+ IP + + G +
Sbjct: 229 --------GFSAGLDASA------------------QTTSHELTIPNDLIGCIIGRQGAK 262
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G+T+ V ++G++ + AQ LI+
Sbjct: 263 INEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINV 306
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 21 GFEPG-----QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
GF G Q L + + IGC++GR G ++E+R+ +GA I++ P GS
Sbjct: 229 GFSAGLDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST 284
Query: 76 HDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPP 128
D V + G+ S+ A + I RL M NN S + PF PPP
Sbjct: 285 -DRQVTITGSAASISLAQYLINVRLSLVTGGMGS-SYNNADSSIIPFCCSPPP 335
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|212275472|ref|NP_001130567.1| uncharacterized protein LOC100191666 [Zea mays]
gi|194689502|gb|ACF78835.1| unknown [Zea mays]
gi|413934214|gb|AFW68765.1| hypothetical protein ZEAMMB73_642279 [Zea mays]
Length = 580
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 16/150 (10%)
Query: 5 PAQDAVMRVHSRIAE---IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
PA DA++RV+ + + P +V R+L S+Q L+G G +++ + A+ I
Sbjct: 116 PAMDALLRVYQQTINNDSLDVGPDNVIVRRILAPSEQAASLIGEHGVMINSIMEASQTDI 175
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPP 121
RV D P D ++++ G+ V AL + S LR+ + S +P
Sbjct: 176 RVL-DDDLPPVALEEDRVIEIWGSPAGVYKALELVASHLRKYLV---------DRSVIPL 225
Query: 122 FPEMPPPPFRPRHNPASPGSYPS-PVGPFH 150
F P P H P Y P GP H
Sbjct: 226 FDRYVPMPI--LHMDMPPCHYIDYPEGPVH 253
>gi|426258121|ref|XP_004022667.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
Length = 404
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 330 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 389
Query: 306 SLIH 309
L+
Sbjct: 390 YLLQ 393
>gi|223649086|gb|ACN11301.1| Heterogeneous nuclear ribonucleoprotein K [Salmo salar]
Length = 440
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 11/122 (9%)
Query: 196 PTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTS----TTIEVVI 251
P DR P +GGG G+D +S + +SG + T +V I
Sbjct: 319 PNSDRRGRPGDRYGDNMGGG---GYDNNSSWDS----YQSGGRGSYNDMGGPVITTQVTI 371
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
P+ + G+ + IR SGA++ +++P G+ + ++ +SGT DQ++ AQ L+
Sbjct: 372 PKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITISGTQDQIQNAQYLLQNS 431
Query: 312 IL 313
L
Sbjct: 432 AL 433
>gi|25144314|ref|NP_740869.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
gi|373218905|emb|CCD64191.1| Protein F26B1.2, isoform a [Caenorhabditis elegans]
Length = 397
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 102/287 (35%), Gaps = 36/287 (12%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSV 89
R+LVH G L+GR G + E+R A +++F C D ++ G +V
Sbjct: 128 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTDRVLITSGEQKNV 182
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFR----PRHNPASPGSYPSP 145
+ + L+E P+K + YLP F P P + PA G P+
Sbjct: 183 LGIIEEVMKELKE--IPIK----GSATPYLPAFNYDPSNISDYGGFPGNMPA--GGPPNN 234
Query: 146 VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
GP P P + A + G D F R G GP S
Sbjct: 235 RGPAPQRGGQGPPGGPRSYGGAITQGGGQRSFEAGDFQQF-----RGGPGPVPGYAMSAP 289
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
+ PQ F N TT +V IP + G
Sbjct: 290 GYPPQ------------QGQFGAPNNAGYGYGPGGGGPVTTAQVTIPSDLGGTIIGRGGE 337
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
++ IRQ SGA + + + G E ++ + GT Q+ +AQ L+ +
Sbjct: 338 RIARIRQESGAQITL-EQSNGQPERIITIKGTEQQIHSAQYLLQQCV 383
>gi|392347947|ref|XP_003749978.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDWIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|32564028|ref|NP_491825.2| Protein F26B1.2, isoform c [Caenorhabditis elegans]
gi|373218907|emb|CCD64193.1| Protein F26B1.2, isoform c [Caenorhabditis elegans]
Length = 380
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 102/287 (35%), Gaps = 36/287 (12%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSV 89
R+LVH G L+GR G + E+R A +++F C D ++ G +V
Sbjct: 111 RMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTDRVLITSGEQKNV 165
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFR----PRHNPASPGSYPSP 145
+ + L+E P+K + YLP F P P + PA G P+
Sbjct: 166 LGIIEEVMKELKE--IPIK----GSATPYLPAFNYDPSNISDYGGFPGNMPA--GGPPNN 217
Query: 146 VGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
GP P P + A + G D F R G GP S
Sbjct: 218 RGPAPQRGGQGPPGGPRSYGGAITQGGGQRSFEAGDFQQF-----RGGPGPVPGYAMSAP 272
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
+ PQ F N TT +V IP + G
Sbjct: 273 GYPPQ------------QGQFGAPNNAGYGYGPGGGGPVTTAQVTIPSDLGGTIIGRGGE 320
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
++ IRQ SGA + + + G E ++ + GT Q+ +AQ L+ +
Sbjct: 321 RIARIRQESGAQITL-EQSNGQPERIITIKGTEQQIHSAQYLLQQCV 366
>gi|291221774|ref|XP_002730893.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Saccoglossus kowalevskii]
Length = 437
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
TT +V IP+ + G+ S + IR+ SGA + +++P PG+ + ++ + GT +Q++ A
Sbjct: 355 TTTQVTIPKDLAGSIIGKGGSRIGQIREDSGALIKIDEPLPGSNDRIITIKGTPEQIQNA 414
Query: 305 QSLIH 309
Q L+
Sbjct: 415 QYLLQ 419
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 53/101 (52%), Gaps = 10/101 (9%)
Query: 10 VMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
V+ + + ++ F+ R+LVH Q G ++GR G + E+R TGA+I+V+ +
Sbjct: 112 VLEEYQQYKDLDFD----CEMRMLVHQSQAGAIIGRAGFKIKELREQTGANIKVY----S 163
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
C + + +VQ+ G+ V + + I L +T P+K P
Sbjct: 164 EVCPNSTERVVQMNGSPEVVINCMRMILDVLNQT--PIKGP 202
>gi|281341834|gb|EFB17418.1| hypothetical protein PANDA_012445 [Ailuropoda melanoleuca]
Length = 320
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 124/305 (40%), Gaps = 77/305 (25%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R GA ++V D P + + + + G
Sbjct: 68 VTLRLVVPASQCGSLIGKGGCKIKEIREV-GAQVQV-AGDMLP---NSTERAITIAGIPQ 122
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 123 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 157
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 158 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPPL-EAY 195
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 196 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGN-TGFSGIESSSPEVKGYWAGLDASAQT- 253
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 254 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 313
Query: 305 QSLIH 309
Q LI+
Sbjct: 314 QYLIN 318
>gi|396482778|ref|XP_003841545.1| similar to KH domain RNA binding protein [Leptosphaeria maculans
JN3]
gi|312218120|emb|CBX98066.1| similar to KH domain RNA binding protein [Leptosphaeria maculans
JN3]
Length = 488
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 122/296 (41%), Gaps = 42/296 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+ G + E++ A+ A + P G + + V+G +V
Sbjct: 214 RLLIPHILIGSIIGKAGVRIREIQEASNAKLNAS-DTLLPNSG---ERSLVVLGVADAVH 269
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSY--------------LPPFPEMPPPPFRPRHNP 136
A++++ L E + +R G Y + P +P P +P
Sbjct: 270 IAVYYVAQTLVEQL--TERFGGPAASQYATRSGMAANVVPGGMSVQPYVPQPAGGQYSHP 327
Query: 137 ASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGP 196
+ P+ P H G G AA HG P P PYG+ PG P
Sbjct: 328 QNFRREPTQRTPAHG---GYG--------AAHMHGGQPPQPSPYGHPNMPYGAGSPGRAP 376
Query: 197 TFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYM 256
+ P +P S+ GG + G TP V S + T ++ IP +
Sbjct: 377 -YGGPAAPTSY------GGHHAAAPVAHGSTPMQPAVGSMPGQPL----TQQIFIPNDMV 425
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A ++++ +
Sbjct: 426 GAIIGKGGAKINEIRQLSGSMIKINEPTDNSNERLVTITGTQECNQMALYMLYSRL 481
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 47/83 (56%), Gaps = 7/83 (8%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDE 78
+G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + ++
Sbjct: 406 VGSMPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSMIKINEPTDNS------NER 459
Query: 79 IVQVIGNYHSVQDALFHITSRLR 101
+V + G Q AL+ + SRL
Sbjct: 460 LVTITGTQECNQMALYMLYSRLE 482
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
A + G+ N++ IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 140 ATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQVDAVSKAFGLI 191
>gi|431902890|gb|ELK09105.1| Heterogeneous nuclear ribonucleoprotein K [Pteropus alecto]
Length = 438
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 307 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 366
Query: 306 SLIHAFI 312
L+ I
Sbjct: 367 YLLQNSI 373
>gi|340718655|ref|XP_003397779.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
terrestris]
Length = 466
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+LVH Q GC++G+GG + E+R TGA I+++ + C D ++ + G +
Sbjct: 138 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY----SHCCPHSTDRLISICGKPN 193
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNN 114
+ + + + + ++ + P+K G NN
Sbjct: 194 TCIECIRELIATIKTS--PLK--GVNN 216
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT +V IP+ + G+ + + +R SGA + +++P G+ + ++ ++G Q++
Sbjct: 391 KTTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQM 450
Query: 304 AQSLIHAFI 312
AQ L+ +
Sbjct: 451 AQYLLQQSV 459
>gi|74223189|dbj|BAE40731.1| unnamed protein product [Mus musculus]
Length = 394
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 320 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 379
Query: 306 SLIH 309
L+
Sbjct: 380 YLLQ 383
>gi|392873506|gb|AFM85585.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 424
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 306 SLIH 309
L+
Sbjct: 411 YLLQ 414
>gi|332027899|gb|EGI67954.1| Heterogeneous nuclear ribonucleoprotein K [Acromyrmex echinatior]
Length = 992
Score = 48.1 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V IP+ + G+ + + IR SGA + +++P PG+ + ++ ++G Q++ A
Sbjct: 161 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 220
Query: 305 QSLIHAFILCGVTS 318
Q L+ + G T+
Sbjct: 221 QYLLQQRYMDGFTT 234
>gi|391338059|ref|XP_003743379.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Metaseiulus occidentalis]
Length = 707
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/72 (38%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 36 SQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQ----VIGNYHSVQD 91
S Q+G ++GRGG V +M+R +GA I+ P++ + R GSP DE V+ +IG++++VQ
Sbjct: 603 SNQVGRIIGRGGSTVKDMQRQSGAIIK-LPEETSRRAGSP-DEAVETPLYIIGDFYAVQA 660
Query: 92 ALFHITSRLRET 103
A I + + T
Sbjct: 661 AQRRIRALIART 672
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL H+ +G ++GR G ++ ++ T A I V + P + ++ + GN
Sbjct: 292 ITLRLLAHNNLVGRVIGRSGIVIKKIMEETNAKINV------SQMTDPRERVIVIRGNLE 345
Query: 88 SVQDALFHITSRLRE 102
+ A ITS++R+
Sbjct: 346 EMSKAQQQITSKMRQ 360
>gi|348528761|ref|XP_003451884.1| PREDICTED: poly(rC)-binding protein 2-like [Oreochromis niloticus]
Length = 317
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/284 (22%), Positives = 109/284 (38%), Gaps = 77/284 (27%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V R++V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGTPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
S+ + + I + E+ P G + P P P F A G + P
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTIPYRPKPSGSPVIFAGGQAYAVQGQHAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
P HQ A PFP PS +
Sbjct: 205 ----------QPDLTKLHQLAMQQS------------PFPIA-------------PSNQG 229
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266
+T G DAS+ ++ +H E+ IP + + G +
Sbjct: 230 FT----------GMDASA---------QTSSH---------EMTIPNDLIGCIIGRQGAK 261
Query: 267 LSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
++ IRQ+SGA + + +P G+T+ V ++G+ + A+ LI+A
Sbjct: 262 INEIRQMSGAQIKIANPVDGSTDRQVTITGSPASISLAEYLINA 305
>gi|332236655|ref|XP_003267515.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Nomascus leucogenys]
gi|332832094|ref|XP_001154460.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 8 [Pan
troglodytes]
gi|338719652|ref|XP_003364039.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475607|ref|XP_003809225.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5 [Pan
paniscus]
gi|402897763|ref|XP_003911914.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Papio anubis]
gi|410978219|ref|XP_003995493.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Felis catus]
gi|426362137|ref|XP_004048237.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Gorilla gorilla gorilla]
gi|26341878|dbj|BAC34601.1| unnamed protein product [Mus musculus]
gi|26353476|dbj|BAC40368.1| unnamed protein product [Mus musculus]
gi|194374597|dbj|BAG62413.1| unnamed protein product [Homo sapiens]
Length = 439
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|126723252|ref|NP_001075594.1| heterogeneous nuclear ribonucleoprotein K [Oryctolagus cuniculus]
gi|12230546|sp|O19049.1|HNRPK_RABIT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|2644968|emb|CAA05815.1| hnRNP-K protein [Oryctolagus cuniculus]
Length = 463
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|281337729|gb|EFB13313.1| hypothetical protein PANDA_003005 [Ailuropoda melanoleuca]
Length = 453
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|426256848|ref|XP_004022049.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Ovis aries]
Length = 466
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|74144445|dbj|BAE36070.1| unnamed protein product [Mus musculus]
Length = 463
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|392513715|ref|NP_001254774.1| heterogeneous nuclear ribonucleoprotein K [Sus scrofa]
Length = 463
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|354500000|ref|XP_003512091.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Cricetulus griseus]
Length = 463
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|148674926|gb|EDL06873.1| mCG121849, isoform CRA_d [Mus musculus]
Length = 261
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 186 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDQIITITGTQDQIQNAQ 245
Query: 306 SLIH 309
L+
Sbjct: 246 YLLQ 249
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ ++ + G ++G+GG + ++R +GASI++ P GS D+I+ + G
Sbjct: 185 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDQIITITGTQD 239
Query: 88 SVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 240 QIQNAQYLLQNSVKQ 254
>gi|426219907|ref|XP_004004159.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Ovis aries]
Length = 439
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|354500004|ref|XP_003512093.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 4
[Cricetulus griseus]
Length = 439
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|387915114|gb|AFK11166.1| heterogeneous nuclear ribonucleoprotein K [Callorhinchus milii]
Length = 436
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 363 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 422
Query: 306 SLIH 309
L+
Sbjct: 423 YLLQ 426
>gi|13384620|ref|NP_079555.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
gi|14165435|ref|NP_112552.1| heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
gi|16923998|ref|NP_476482.1| heterogeneous nuclear ribonucleoprotein K [Rattus norvegicus]
gi|114625188|ref|XP_001155028.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 17
[Pan troglodytes]
gi|114625190|ref|XP_001155252.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 21
[Pan troglodytes]
gi|126334813|ref|XP_001368466.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Monodelphis domestica]
gi|296189583|ref|XP_002742833.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6
[Callithrix jacchus]
gi|332236649|ref|XP_003267512.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Nomascus leucogenys]
gi|332236653|ref|XP_003267514.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Nomascus leucogenys]
gi|338719650|ref|XP_003364038.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Equus
caballus]
gi|397475601|ref|XP_003809222.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2 [Pan
paniscus]
gi|397475605|ref|XP_003809224.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4 [Pan
paniscus]
gi|402897757|ref|XP_003911911.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Papio anubis]
gi|402897759|ref|XP_003911912.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Papio anubis]
gi|403300940|ref|XP_003941170.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Saimiri boliviensis boliviensis]
gi|410978215|ref|XP_003995491.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Felis catus]
gi|410978217|ref|XP_003995492.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Felis catus]
gi|426362133|ref|XP_004048235.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Gorilla gorilla gorilla]
gi|426362135|ref|XP_004048236.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Gorilla gorilla gorilla]
gi|48429097|sp|P61980.1|HNRPK_RAT RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=dC stretch-binding protein;
Short=CSBP
gi|48429103|sp|P61978.1|HNRPK_HUMAN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K; AltName: Full=Transformation up-regulated
nuclear protein; Short=TUNP
gi|48429104|sp|P61979.1|HNRPK_MOUSE RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|241478|gb|AAB20770.1| heterogeneous nuclear ribonucleoprotein complex K [Homo sapiens]
gi|409389|dbj|BAA04566.1| dC-stretch binding protein [Rattus norvegicus]
gi|12847547|dbj|BAB27614.1| unnamed protein product [Mus musculus]
gi|15929044|gb|AAH14980.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|119583079|gb|EAW62675.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Homo
sapiens]
gi|148709316|gb|EDL41262.1| mCG6893, isoform CRA_a [Mus musculus]
gi|149039793|gb|EDL93909.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_a [Rattus
norvegicus]
gi|380812324|gb|AFE78036.1| heterogeneous nuclear ribonucleoprotein K isoform b [Macaca
mulatta]
gi|410337441|gb|JAA37667.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401355|gb|JAA47567.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 463
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|74225344|dbj|BAE31602.1| unnamed protein product [Mus musculus]
Length = 459
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|334333295|ref|XP_003341704.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
Length = 470
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 396 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 455
Query: 306 SLIH 309
L+
Sbjct: 456 YLLQ 459
>gi|375065844|ref|NP_001243477.1| heterogeneous nuclear ribonucleoprotein K [Canis lupus familiaris]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|168277712|dbj|BAG10834.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|184186906|gb|ACC69193.1| heterogeneous nuclear ribonucleoprotein K [Mus musculus]
Length = 440
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|350409768|ref|XP_003488838.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Bombus
impatiens]
Length = 439
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+LVH Q GC++G+GG + E+R TGA I+++ + C D ++ + G +
Sbjct: 152 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY----SHCCPHSTDRLISICGKPN 207
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNN 114
+ + + + + ++ + P+K G NN
Sbjct: 208 TCIECIRELIATIKTS--PLK--GVNN 230
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT +V IP+ + G+ + + +R SGA + +++P G+ + ++ ++G Q++
Sbjct: 364 KTTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQM 423
Query: 304 AQSLIHAFI 312
AQ L+ +
Sbjct: 424 AQYLLQQSV 432
>gi|291358560|gb|ADD96765.1| heterogeneous nuclear ribonuclear protein K [Capra hircus]
Length = 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 367 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 426
Query: 306 SLIH 309
L+
Sbjct: 427 YLLQ 430
>gi|74198765|dbj|BAE30613.1| unnamed protein product [Mus musculus]
Length = 450
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|14165437|ref|NP_112553.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|14165439|ref|NP_002131.2| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197101649|ref|NP_001126766.1| heterogeneous nuclear ribonucleoprotein K [Pongo abelii]
gi|388454448|ref|NP_001253875.1| heterogeneous nuclear ribonucleoprotein K [Macaca mulatta]
gi|114625208|ref|XP_001155079.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 18
[Pan troglodytes]
gi|114625210|ref|XP_001155315.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 22
[Pan troglodytes]
gi|149758457|ref|XP_001489114.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Equus caballus]
gi|296189573|ref|XP_002742828.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Callithrix jacchus]
gi|296189575|ref|XP_002742829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Callithrix jacchus]
gi|296189579|ref|XP_002742831.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Callithrix jacchus]
gi|301758414|ref|XP_002915066.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Ailuropoda melanoleuca]
gi|332236647|ref|XP_003267511.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Nomascus leucogenys]
gi|332236651|ref|XP_003267513.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Nomascus leucogenys]
gi|344272026|ref|XP_003407837.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Loxodonta africana]
gi|395819298|ref|XP_003783031.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Otolemur
garnettii]
gi|397475599|ref|XP_003809221.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1 [Pan
paniscus]
gi|397475603|ref|XP_003809223.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3 [Pan
paniscus]
gi|397475609|ref|XP_003809226.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 6 [Pan
paniscus]
gi|402897753|ref|XP_003911909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Papio anubis]
gi|402897755|ref|XP_003911910.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Papio anubis]
gi|402897761|ref|XP_003911913.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 5
[Papio anubis]
gi|403300938|ref|XP_003941169.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Saimiri boliviensis boliviensis]
gi|403300942|ref|XP_003941171.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 3
[Saimiri boliviensis boliviensis]
gi|403300944|ref|XP_003941172.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 4
[Saimiri boliviensis boliviensis]
gi|410978211|ref|XP_003995489.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Felis catus]
gi|410978213|ref|XP_003995490.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Felis catus]
gi|426362129|ref|XP_004048233.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Gorilla gorilla gorilla]
gi|426362131|ref|XP_004048234.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Gorilla gorilla gorilla]
gi|75056718|sp|Q5R5H8.1|HNRPK_PONAB RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|75075750|sp|Q4R4M6.1|HNRPK_MACFA RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|12653175|gb|AAH00355.1| Heterogeneous nuclear ribonucleoprotein K [Homo sapiens]
gi|13879427|gb|AAH06694.1| Hnrpk protein [Mus musculus]
gi|26347481|dbj|BAC37389.1| unnamed protein product [Mus musculus]
gi|38197650|gb|AAH61867.1| Hnrpk protein [Rattus norvegicus]
gi|48145659|emb|CAG33052.1| HNRPK [Homo sapiens]
gi|55732576|emb|CAH92988.1| hypothetical protein [Pongo abelii]
gi|58475965|gb|AAH89328.1| Hnrpk protein [Mus musculus]
gi|61359196|gb|AAX41682.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|67971214|dbj|BAE01949.1| unnamed protein product [Macaca fascicularis]
gi|74139420|dbj|BAE40851.1| unnamed protein product [Mus musculus]
gi|74141211|dbj|BAE35915.1| unnamed protein product [Mus musculus]
gi|74178242|dbj|BAE29905.1| unnamed protein product [Mus musculus]
gi|74183280|dbj|BAE22563.1| unnamed protein product [Mus musculus]
gi|74185026|dbj|BAE39121.1| unnamed protein product [Mus musculus]
gi|119583081|gb|EAW62677.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_c [Homo
sapiens]
gi|123979648|gb|ABM81653.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|123994453|gb|ABM84828.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
gi|158256108|dbj|BAF84025.1| unnamed protein product [Homo sapiens]
gi|197692227|dbj|BAG70077.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|197692481|dbj|BAG70204.1| heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
gi|351696771|gb|EHA99689.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
gi|380812328|gb|AFE78038.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|380812330|gb|AFE78039.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
gi|410337439|gb|JAA37666.1| heterogeneous nuclear ribonucleoprotein K [Pan troglodytes]
gi|417401379|gb|JAA47578.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Desmodus
rotundus]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|473912|gb|AAA21731.1| phosphoprotein [Mus cookii]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|460789|emb|CAA51267.1| transformation upregulated nuclear protein [Homo sapiens]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|354499998|ref|XP_003512090.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Cricetulus griseus]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|1083569|pir||A54143 kappa-B motif-binding phosphoprotein - mouse
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|59381084|gb|AAW84289.1| heterogeneous nuclear ribonucleoprotein K transcript variant [Homo
sapiens]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|77736071|ref|NP_001029734.1| heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|426219903|ref|XP_004004157.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Ovis aries]
gi|426219905|ref|XP_004004158.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ovis aries]
gi|426224282|ref|XP_004006301.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Ovis
aries]
gi|426256846|ref|XP_004022048.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Ovis aries]
gi|108860777|sp|Q3T0D0.1|HNRPK_BOVIN RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|74354615|gb|AAI02451.1| Heterogeneous nuclear ribonucleoprotein K [Bos taurus]
gi|296484523|tpg|DAA26638.1| TPA: heterogeneous nuclear ribonucleoprotein K [Bos taurus]
Length = 464
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|354500002|ref|XP_003512092.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 3
[Cricetulus griseus]
Length = 440
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|345329393|ref|XP_001506808.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Ornithorhynchus anatinus]
Length = 464
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|148674927|gb|EDL06874.1| mCG121849, isoform CRA_e [Mus musculus]
Length = 266
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 186 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDQIITITGTQDQIQNAQ 245
Query: 306 SLIH 309
L+
Sbjct: 246 YLLQ 249
>gi|62088704|dbj|BAD92799.1| heterogeneous nuclear ribonucleoprotein K isoform a variant [Homo
sapiens]
Length = 442
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 367 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 426
Query: 306 SLIH 309
L+
Sbjct: 427 YLLQ 430
>gi|74177637|dbj|BAE38921.1| unnamed protein product [Mus musculus]
Length = 464
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|148674928|gb|EDL06875.1| mCG121849, isoform CRA_f [Mus musculus]
Length = 306
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 186 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDQIITITGTQDQIQNAQ 245
Query: 306 SLIH 309
L+
Sbjct: 246 YLLQ 249
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D+I+ + G
Sbjct: 182 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDQIITITG 236
Query: 85 NYHSVQDALFHITSRLRETIF 105
+Q+A + + + ++ +I
Sbjct: 237 TQDQIQNAQYLLQNSVKHSIL 257
>gi|126330639|ref|XP_001363707.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Monodelphis domestica]
gi|395515329|ref|XP_003761858.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Sarcophilus
harrisii]
Length = 471
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 396 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 455
Query: 306 SLIH 309
L+
Sbjct: 456 YLLQ 459
>gi|380812326|gb|AFE78037.1| heterogeneous nuclear ribonucleoprotein K isoform a [Macaca
mulatta]
Length = 459
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 384 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 443
Query: 306 SLIH 309
L+
Sbjct: 444 YLLQ 447
>gi|363744460|ref|XP_003643054.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Gallus gallus]
Length = 426
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 352 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 411
Query: 306 SLIH 309
L+
Sbjct: 412 YLLQ 415
>gi|119583082|gb|EAW62678.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
gi|119583085|gb|EAW62681.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_d [Homo
sapiens]
Length = 463
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|61369343|gb|AAX43320.1| heterogeneous nuclear ribonucleoprotein K [synthetic construct]
Length = 465
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|119583083|gb|EAW62679.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_e [Homo
sapiens]
Length = 464
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|119583084|gb|EAW62680.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_f [Homo
sapiens]
Length = 440
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 365 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 424
Query: 306 SLIH 309
L+
Sbjct: 425 YLLQ 428
>gi|119583080|gb|EAW62676.1| heterogeneous nuclear ribonucleoprotein K, isoform CRA_b [Homo
sapiens]
Length = 462
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 388 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 447
Query: 306 SLIH 309
L+
Sbjct: 448 YLLQ 451
>gi|71897277|ref|NP_001026556.1| heterogeneous nuclear ribonucleoprotein K [Gallus gallus]
gi|75571241|sp|Q5ZIQ3.1|HNRPK_CHICK RecName: Full=Heterogeneous nuclear ribonucleoprotein K;
Short=hnRNP K
gi|53135051|emb|CAG32390.1| hypothetical protein RCJMB04_24e23 [Gallus gallus]
Length = 427
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLIH 309
L+
Sbjct: 413 YLLQ 416
>gi|363744462|ref|XP_425032.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Gallus gallus]
Length = 430
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 355 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 414
Query: 306 SLIH 309
L+
Sbjct: 415 YLLQ 418
>gi|327260862|ref|XP_003215252.1| PREDICTED: poly(rC)-binding protein 3-like [Anolis carolinensis]
Length = 339
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 57/292 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGTPD 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
++ + I + E+ P G + P P P F G Y P
Sbjct: 154 AIIQCVKQICVVMLES--------PPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
H P Q HQ A P P FP G + P H
Sbjct: 205 ---H-------PDQLTKLHQLAMQQ--TPFTPLGQTTPAFP-GEKLPLHS---------- 241
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
S Q + G G DAS P S + I P + + G +
Sbjct: 242 SEEAQNL-MGQSSGLDAS--------PPASTHELTI----------PNDLIGCIIGRQGT 282
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 283 KINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 334
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|194376532|dbj|BAG57412.1| unnamed protein product [Homo sapiens]
Length = 459
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 384 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 443
Query: 306 SLIH 309
L+
Sbjct: 444 YLLQ 447
>gi|198465289|ref|XP_001353580.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
gi|198150092|gb|EAL31093.2| GA20351 [Drosophila pseudoobscura pseudoobscura]
Length = 330
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 119/312 (38%), Gaps = 48/312 (15%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSY 142
G +++ A IT + E G G + +P +P
Sbjct: 72 SGTTNAIFSAFTLITKKFEEWCSQFNDAGK-IGKTQIPIRLIVPASQC------------ 118
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
S +G S + + + Q A M+P +++R GS +
Sbjct: 119 GSLIGKSGSKIKEIRQTTGCSIQVA-----SEMLPNSTERAVTLSGSAEQITQCIYQICL 173
Query: 203 SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESG--NHAAILTSTTI------------- 247
P+ +P A+ G N P +G NH A L +
Sbjct: 174 VMLESCPRSTVAKNPLASLAALGLAGMN-PASTGGINHTAALAALAGSQLRTANAANRAQ 232
Query: 248 ----EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQ 300
E+ + + + G+ + ++ IRQISGA + +++ + G T+ + +SG D
Sbjct: 233 QQQHEMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDS 292
Query: 301 MRAAQSLIHAFI 312
+ AQ LI+ I
Sbjct: 293 VALAQYLINMRI 304
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 237 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 294
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 295 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 328
>gi|355753438|gb|EHH57484.1| hypothetical protein EGM_07121 [Macaca fascicularis]
Length = 464
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|363735768|ref|XP_003641607.1| PREDICTED: poly(rC)-binding protein 3-like [Gallus gallus]
gi|449506326|ref|XP_002191682.2| PREDICTED: poly(rC)-binding protein 3 [Taeniopygia guttata]
Length = 339
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 111/292 (38%), Gaps = 57/292 (19%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGTPD 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSY-LPPFPEMPPPPFRPRHNPASPGSYPSPV 146
++ + I + E+ P G + P P P F G Y P
Sbjct: 154 AIIQCVKQICVVMLES--------PPKGATIPYRPKPASTPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPR 205
H P Q HQ A P P FP G + P H
Sbjct: 205 ---H-------PDQLTKLHQLAMQQ--TPFTPLGQTTPAFP-GEKLPLHS---------- 241
Query: 206 SWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNS 265
S Q + G G DAS P S + I P + + G +
Sbjct: 242 SEEAQNL-MGQSSGLDAS--------PPASTHELTI----------PNDLIGCIIGRQGT 282
Query: 266 NLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 283 KINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 334
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
>gi|291575150|ref|NP_065151.2| poly(rC)-binding protein 4 isoform a [Homo sapiens]
gi|114587204|ref|XP_001170813.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan troglodytes]
gi|16877720|gb|AAH17098.1| PCBP4 protein [Homo sapiens]
gi|119585570|gb|EAW65166.1| poly(rC) binding protein 4, isoform CRA_b [Homo sapiens]
Length = 360
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 108/288 (37%), Gaps = 42/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L+H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTA 70
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
+V A+ I +L E + P NG + PP R + GS G
Sbjct: 71 AVFHAVSMIAFKLDEDLCA----APANGGNV-----SRPPVTLRLVIPASQCGSLIGKAG 121
Query: 148 PFHSMDRGMGPS-QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
R P + + S G + + YG+ P + S
Sbjct: 122 TKIKEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPAEVTKLQQLSSHAV 181
Query: 207 --WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
TP V G DP G SS E ++P + V G
Sbjct: 182 PFATPSVVPGLDP-GTQTSSQ----------------------EFLVPNDLIGCVIGRQG 218
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
S +S IRQ+SGA++ + + GA E V ++G+ + AQ LI A +
Sbjct: 219 SKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL 266
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
>gi|170027830|ref|XP_001841800.1| heterogeneous nuclear ribonucleoprotein k [Culex quinquefasciatus]
gi|167862370|gb|EDS25753.1| heterogeneous nuclear ribonucleoprotein k [Culex quinquefasciatus]
Length = 429
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+LVH GC++GRGG + E++ G +++F + AP+ D I QV+G
Sbjct: 94 RILVHQSLAGCVIGRGGTKIKELKDQIGCRLKIFS-NIAPQS---TDRIAQVVGTEDQCL 149
Query: 91 DALFHITSRLRETIFPMKRPGPNNG-HSYLPPFPE 124
AL I ++ T P+K P N H+Y + E
Sbjct: 150 KALNDIIGLIKGT--PIKGPVHNYDPHNYDDVYSE 182
>gi|198427864|ref|XP_002125995.1| PREDICTED: similar to heterogeneous nuclear ribonucleoprotein K
[Ciona intestinalis]
Length = 402
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 213 GGGDPRGF-DASSGFTP--RNRPVESGN-HAAILTSTTIEVVIPQLYMAHVYGENNSNLS 268
GG D G+ D F P N +SG+ T +V IP A V G+ +
Sbjct: 293 GGYDEDGYQDYDDNFDPYQENLYNDSGDGQTGNGDQKTTQVTIPTSCAASVIGKTGQRIR 352
Query: 269 HIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
IR+ SGA +V+++ PG E V+ ++G +Q + AQ L+
Sbjct: 353 QIREDSGAVIVIDEAGPGEEERVISITGNEEQTQNAQFLLQ 393
>gi|426218401|ref|XP_004003435.1| PREDICTED: poly(rC)-binding protein 3 isoform 4 [Ovis aries]
Length = 332
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 111/294 (37%), Gaps = 68/294 (23%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + V + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLP---NSTERAVTISGTPD 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHS-YLPPFPEMPPPPFRPRHNPASPGSYPSPV 146
++ + I + E+ P G + + P P P F G Y P
Sbjct: 154 AIIQCVKQICVVMLES--------PRKGVTVVVAPKPASTPVIFAGGQAYTIQGQYAIP- 204
Query: 147 GPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPF-PYGSERPGHGPTFDRP-PSP 204
H P HQ A + PF P G P P DR P
Sbjct: 205 ---H-------PDLTKLHQLAM------------QQTPFPPLGQTNPAF-PGTDRAVPFV 241
Query: 205 RS-WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
RS W DAS P S + I P + + G
Sbjct: 242 RSPWA----------CLDAS--------PPASTHELTI----------PNDLIGCIIGRQ 273
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317
+ ++ IRQ+SGA + + + G++E + ++GT + AQ LI+A + VT
Sbjct: 274 GTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISLAQYLINARLTSEVT 327
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|357481253|ref|XP_003610912.1| Far upstream element-binding protein [Medicago truncatula]
gi|355512247|gb|AES93870.1| Far upstream element-binding protein [Medicago truncatula]
Length = 807
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 21 GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH 76
G P QA+V ++ V ++++G ++G+GG + ++ TGA I++ P+ P
Sbjct: 270 GLSPAQAIVGSDQIQIQVPNEKVGLIIGKGGETIKSLQTKTGARIQLIPQ-HLPEGDDSK 328
Query: 77 DEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL 119
+ VQV G+ ++ A I L + I+P+ P P H +L
Sbjct: 329 ERTVQVTGDKRQIEIAQEMIKEVLSQ-IWPL--PFPWGQHCFL 368
>gi|449514357|ref|XP_002192510.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Taeniopygia
guttata]
Length = 434
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 359 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 418
Query: 306 SLIH 309
L+
Sbjct: 419 YLLQ 422
>gi|361132042|gb|EHL03657.1| putative Poly(rC)-binding protein 2 [Glarea lozoyensis 74030]
Length = 481
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 73/193 (37%), Gaps = 25/193 (12%)
Query: 126 PPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPF 185
PPP P + P PS PS P D A +D +V D+ P
Sbjct: 5 PPPTTTPAQSTKRPLEDPS------------SPSAPDDRPEAKRPALDKIVKGEEDQKPD 52
Query: 186 PYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRN-RPVESGNHAAILTS 244
E P T D QGV G +G A P++ S N ++S
Sbjct: 53 AGTVELPVVSSTPDTKAPTNGVKSQGVDG---QGDTAVPDVAPQSIETTTSSNREHSVSS 109
Query: 245 TT---------IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
T I VI A V G+ N+S IR++SGA V++ + GA E ++ VS
Sbjct: 110 TLPHDESSWIHIRAVITSAEAATVIGKGGENVSLIRKMSGAKCTVSEYQKGAVERILTVS 169
Query: 296 GTSDQMRAAQSLI 308
G D A LI
Sbjct: 170 GVVDAAAKAFGLI 182
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 400 GLVPGQPLTQQIFIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNS------NERL 453
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 454 VTITGTQECNQMALYMLYSRLE 475
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 408 TQQIFIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 467
Query: 306 SLIHAFI 312
++++ +
Sbjct: 468 YMLYSRL 474
>gi|328781397|ref|XP_392536.4| PREDICTED: heterogeneous nuclear ribonucleoprotein K [Apis
mellifera]
Length = 482
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+LVH Q GC++G+GG + E+R TGA I+++ + C D ++ + G
Sbjct: 159 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY----SHCCPHSTDRLISICGKPT 214
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNN 114
+ + + + + ++ + P+K G NN
Sbjct: 215 TCIECIRELIATIKTS--PLK--GVNN 237
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 37/66 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT +V IP+ + G+ + + +R SGA + +++P G+ + ++ ++G Q++
Sbjct: 407 KTTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQM 466
Query: 304 AQSLIH 309
AQ L+
Sbjct: 467 AQYLLQ 472
>gi|194881635|ref|XP_001974928.1| GG22043 [Drosophila erecta]
gi|190658115|gb|EDV55328.1| GG22043 [Drosophila erecta]
Length = 498
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V DA+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQSQVIDAVREVITLTRDT 167
>gi|195486812|ref|XP_002091665.1| GE12124 [Drosophila yakuba]
gi|194177766|gb|EDW91377.1| GE12124 [Drosophila yakuba]
Length = 497
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V DA+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQSQVIDAVREVITLTRDT 167
>gi|405957027|gb|EKC23265.1| Heterogeneous nuclear ribonucleoprotein K [Crassostrea gigas]
Length = 594
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLVH Q GC++GR G + E+R TGA I+V+ + C + +V + G V
Sbjct: 159 RLLVHQSQAGCIIGRAGFKIKELRERTGAQIKVYSQ----CCPESTERVVAIGGKPKIVV 214
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRH 134
D + ETI + + P P+ P P+ P +
Sbjct: 215 DCI--------ETIHDLLQTAP----------PKGPNQPYDPLY 240
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 41/65 (63%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
+ +V IP+ + G+ + + IR+ S A +V+++ PG+ + ++ ++GT +Q+++AQ
Sbjct: 472 STQVTIPKDLAGAIIGKGGARIQEIRRQSNAQIVIDEGLPGSNDRIITITGTHEQIQSAQ 531
Query: 306 SLIHA 310
L+ +
Sbjct: 532 FLLQS 536
>gi|324518489|gb|ADY47116.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
gi|324519835|gb|ADY47493.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 361
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLVH G ++GRGG+ + E+R T ++V+ + C + ++Q+IG +
Sbjct: 125 RLLVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQC----CPQSTERVIQIIGVPEKII 180
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPF 122
+ I + L+E P+K P P Y P F
Sbjct: 181 ACVILIINMLKE--IPIKGPSRPYESMFYDPNF 211
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP + G+ ++ IR+ SGA++VV +P +E ++ +SG+ Q++ AQ
Sbjct: 270 TTQVTIPNELGGTIIGKGGERINRIREESGAHIVVEPQQPN-SERIITISGSHAQIQTAQ 328
Query: 306 SLIHAFIL 313
L+ +I+
Sbjct: 329 YLLQQWIV 336
>gi|327263405|ref|XP_003216510.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Anolis
carolinensis]
Length = 425
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 306 SLIH 309
L+
Sbjct: 411 YLLQ 414
>gi|387018122|gb|AFJ51179.1| Heterogeneous nuclear ribonucleoprotein K-like [Crotalus
adamanteus]
Length = 426
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 351 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 410
Query: 306 SLIH 309
L+
Sbjct: 411 YLLQ 414
>gi|449524744|ref|XP_004169381.1| PREDICTED: poly(rC)-binding protein 3-like [Cucumis sativus]
Length = 224
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 4 SPAQDAVMRVHSRIAEIGFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGA 59
SPA DAV+RV R++ + +A + RLLV S Q L+G+ G ++ ++ +TGA
Sbjct: 141 SPAMDAVIRVFKRVSGLSENEDEAKASFCSIRLLVASTQAINLIGKQGSLIKSIQESTGA 200
Query: 60 SIRVF 64
S+RV
Sbjct: 201 SVRVL 205
>gi|380012793|ref|XP_003690459.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Apis
florea]
Length = 443
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+LVH Q GC++G+GG + E+R TGA I+++ + C D ++ + G
Sbjct: 120 IDVRMLVHQSQAGCIIGKGGLKIKELREKTGARIKIY----SHCCPHSTDRLISICGKPT 175
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNN 114
+ + + + + ++ + P+K G NN
Sbjct: 176 TCIECIRELIATIKTS--PLK--GVNN 198
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT +V IP+ + G+ + + +R SGA + +++P G+ + ++ ++G Q++
Sbjct: 368 KTTTQVTIPKDLAGAIIGKGGARIRKVRSDSGAGITIDEPLSGSNDRIITITGLPSQIQM 427
Query: 304 AQSLIHAFI 312
AQ L+ +
Sbjct: 428 AQYLLQQSV 436
>gi|355567865|gb|EHH24206.1| hypothetical protein EGK_07823 [Macaca mulatta]
Length = 464
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGFKDQIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|426340777|ref|XP_004034304.1| PREDICTED: poly(rC)-binding protein 4 isoform 4 [Gorilla gorilla
gorilla]
Length = 360
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 67/288 (23%), Positives = 108/288 (37%), Gaps = 42/288 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L+H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTA 70
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
+V A+ I +L E + P NG + PP R + GS G
Sbjct: 71 AVFHAVSMIAFKLDEDLCA----APANGGNV-----SRPPVTLRLVIPASQCGSLIGKAG 121
Query: 148 PFHSMDRGMGPS-QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
R P + + S G + + YG+ P + S
Sbjct: 122 TKIKEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGAVTPTEVTKLQQLSSHAV 181
Query: 207 --WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264
TP V G DP G SS E ++P + V G
Sbjct: 182 PFATPSVVPGLDP-GTQTSSQ----------------------EFLVPNDLIGCVIGRQG 218
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
S +S IRQ+SGA++ + + GA E V ++G+ + AQ LI A +
Sbjct: 219 SKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYLITACL 266
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
>gi|449272169|gb|EMC82214.1| Heterogeneous nuclear ribonucleoprotein K [Columba livia]
Length = 422
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLNLSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLIH 309
L+
Sbjct: 413 YLLQ 416
>gi|452837822|gb|EME39763.1| hypothetical protein DOTSEDRAFT_74610 [Dothistroma septosporum
NZE10]
Length = 490
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 403 GMVPGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQD------NNNERL 456
Query: 80 VQVIGNYHSVQDALFHITSRLRET 103
V + G Q AL+ + SRL E+
Sbjct: 457 VTITGTQECNQMALYMLYSRLGES 480
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 124/296 (41%), Gaps = 44/296 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSV 89
RLL+ IG ++G+ G + E++ A+GA + + + C E + V+G +V
Sbjct: 212 RLLIPHILIGSIIGKQGVRIREIQEASGARL-----NASESCLPLSTERSLVVLGVADAV 266
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYL--------PPFPEMPPPPFRPRHNPASPGS 141
A +++ S L E + +R G +Y M P+ P+H G
Sbjct: 267 HIATYYVGSTLVEQL--TERFGGPAASNYAGRHGGPQGVVPGGMQVVPYVPQHAGGQMGH 324
Query: 142 YPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERP-----GHGP 196
H+ + P+QP+ Q + G P+ P + P YG+ P G GP
Sbjct: 325 PDYNRNKQHAQPQ-RTPAQPYGGQQ-YMQGQTPLPP---QQAPMGYGAGSPRAPYVGAGP 379
Query: 197 TFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYM 256
+ P P G P+ G P +P+ T ++ IP +
Sbjct: 380 ---QQPQPYGHAAPQAHAGPPQ--QPMQGMVP-GQPI------------TQQIFIPNDMV 421
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ G+ + ++ IRQ+SG+ + +N+P+ E +V ++GT + + A ++++ +
Sbjct: 422 GAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQECNQMALYMLYSRL 477
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ +I A V G+ N++ IR+++GA V++ GA E ++ VSG D + A
Sbjct: 128 VRAIISSAEAATVIGKGGENVTQIRRMAGAKCTVSEYTRGAVERILTVSGLVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
>gi|357485437|ref|XP_003613006.1| hypothetical protein MTR_5g031580 [Medicago truncatula]
gi|355514341|gb|AES95964.1| hypothetical protein MTR_5g031580 [Medicago truncatula]
Length = 61
Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 272 QISGANVVVNDP-KPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
QISGA+V V DP G + G V++SGT DQ AAQSL+ AFI
Sbjct: 14 QISGADVTVFDPSNTGTSGGKVVISGTPDQTFAAQSLLQAFI 55
>gi|452978145|gb|EME77909.1| hypothetical protein MYCFIDRAFT_63821 [Pseudocercospora fijiensis
CIRAD86]
Length = 480
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 49/84 (58%), Gaps = 7/84 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 393 GMVPGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQD------NNNERL 446
Query: 80 VQVIGNYHSVQDALFHITSRLRET 103
V + G Q AL+ + SRL E+
Sbjct: 447 VTITGTQECNQMALYMLYSRLGES 470
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ E +V ++GT + + A
Sbjct: 401 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQECNQMAL 460
Query: 306 SLIHAFI 312
++++ +
Sbjct: 461 YMLYSRL 467
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ +I A V G+ N++ IR+++GA V++ GA E ++ VSG D + A
Sbjct: 119 VRAIISSAEAATVIGKGGENVTQIRRLAGAKCTVSEYTRGAVERILTVSGHVDAVAKAFG 178
Query: 307 LI 308
LI
Sbjct: 179 LI 180
>gi|348578485|ref|XP_003475013.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Cavia
porcellus]
Length = 338
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 263 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 322
Query: 306 SLIH 309
L+
Sbjct: 323 YLLQ 326
>gi|321455006|gb|EFX66153.1| hypothetical protein DAPPUDRAFT_2216 [Daphnia pulex]
Length = 388
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 13 VHSRIAEIGFEP-GQAV--VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF P G+ V LLV S Q+G ++G+GG V EM+R T + I++ +Q
Sbjct: 296 IFEKMREEGFMPAGEDVRLTVELLVASSQVGRIIGKGGQNVREMQRTTSSVIKL--PEQG 353
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102
G + V +IGN+ +VQ A I + + +
Sbjct: 354 ASTG--EETTVHIIGNFFAVQSAQRRIRAMMSQ 384
>gi|76155692|gb|AAX26976.2| SJCHGC04382 protein [Schistosoma japonicum]
Length = 176
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
VV +++ + IGC++GRGG ++E+R A+ A I++ + + + + V G
Sbjct: 93 NVVVREMIISNDVIGCIIGRGGTTINEIRNASKAQIKISNCEDGAK-----ERKITVTGK 147
Query: 86 YHSVQDALFHITSRLRETIFP 106
SV A F I SR+ +
Sbjct: 148 LDSVNLAQFLINSRISAELLA 168
>gi|198469242|ref|XP_001354960.2| GA14212 [Drosophila pseudoobscura pseudoobscura]
gi|198146781|gb|EAL32016.2| GA14212 [Drosophila pseudoobscura pseudoobscura]
Length = 521
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + LLV S Q+G ++G+GG V E++R TG+ I++ A
Sbjct: 371 IFEKMREEGFMCGTDDVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALA 430
Query: 70 PRCGSPHDEIVQVIGNYHSVQ 90
P G + V +IG ++SVQ
Sbjct: 431 PPAGGDEETPVHIIGPFYSVQ 451
>gi|453080702|gb|EMF08752.1| hypothetical protein SEPMUDRAFT_151698 [Mycosphaerella populorum
SO2202]
Length = 518
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D ++ +
Sbjct: 431 GVGPGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNN------NERL 484
Query: 80 VQVIGNYHSVQDALFHITSRLRET 103
V + G Q AL+ + SRL E+
Sbjct: 485 VTITGTQECNQMALYMLYSRLGES 508
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ +I A V G+ N+S IR+++GA V++ GA E V+ VSG D + A
Sbjct: 154 VRAIISSAEAATVIGKGGENVSQIRKLAGAKCTVSEYTRGAVERVLTVSGQVDAVAKAFG 213
Query: 307 LI 308
LI
Sbjct: 214 LI 215
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ E +V ++GT + + A
Sbjct: 439 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQECNQMAL 498
Query: 306 SLIHAFI 312
++++ +
Sbjct: 499 YMLYSRL 505
>gi|334343559|ref|XP_003341817.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Monodelphis
domestica]
Length = 367
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 110/289 (38%), Gaps = 44/289 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+++H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMIMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTG 70
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
+V A+ I +L E + GP NG S PP R + GS G
Sbjct: 71 AVFHAVSMIAFKLDEDLCT----GPPNGGSI-----SKPPVTLRLVIPASQCGSLIGKAG 121
Query: 148 PFHSMDRGMGPS-QPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRP---PS 203
R P + + S G + + YG+ P + P
Sbjct: 122 TKIKEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGTVTPAEVSKLQQLSGHPV 181
Query: 204 PRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGEN 263
P + +P V G DP +S F ++P + V G
Sbjct: 182 PFA-SPSVVPGLDPSAQTSSQEF-----------------------LVPNDLIGCVIGRQ 217
Query: 264 NSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
S +S IRQ+SGA++ + + G+ E V ++G+ + AQ LI A +
Sbjct: 218 GSKISEIRQMSGAHIKIGNQAEGSGERHVTITGSPVSIALAQYLITACL 266
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 21 GFEP-GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPSAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGSGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL-PPF-PEMPPPPFRPRHNPA 137
V + G+ S+ A + IT+ L ET P +G + L PF P + P P A
Sbjct: 246 VTITGSPVSIALAQYLITACL-ETAKSTSGGTPGSGTADLSAPFSPPLAPSPALTALPAA 304
Query: 138 SPGSYPSPVGPFHSMDRGMGP 158
PG +P S G+ P
Sbjct: 305 PPGLLGTPYAISLSNFIGLKP 325
>gi|348581995|ref|XP_003476762.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Cavia porcellus]
Length = 360
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 67/305 (21%), Positives = 113/305 (37%), Gaps = 76/305 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L+H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTA 70
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
+V A+ I +L E + P NG S PP R + GS G
Sbjct: 71 AVFHAVSMIAFKLDEDLCA----APANGGSV-----SRPPVTLRLVIPASQCGSLIGKAG 121
Query: 148 ----------------PFH-SMDRG---MGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPY 187
P+H S+ G + +Q F Q + + P ++
Sbjct: 122 TKIKEIRESPPKGATIPYHPSLSLGTVLLSANQGFSVQGQYGA----VTPAEVTKL---- 173
Query: 188 GSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTI 247
+ GH F +P V G DP +S F
Sbjct: 174 -QQLSGHAVPF--------ASPSVVPGLDPAAQTSSQEF--------------------- 203
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
++P + V G S +S IRQ+SGA++ + + GA E + ++G+ + AQ L
Sbjct: 204 --LVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHITITGSPVSIALAQYL 261
Query: 308 IHAFI 312
I A +
Sbjct: 262 ITACL 266
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPAAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
+ + G+ S+ A + IT+ L
Sbjct: 246 ITITGSPVSIALAQYLITACLE 267
>gi|380024759|ref|XP_003696159.1| PREDICTED: poly(rC)-binding protein 3-like [Apis florea]
Length = 560
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V D P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASDMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 160 AITQCIYHICCVMLES 175
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 369 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVS 426
Query: 91 DALFHIT 97
A + I+
Sbjct: 427 LAQYLIS 433
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
TP GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 331 TPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 388
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
+ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 389 AEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVSLAQYLI 432
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V +D P +TE V +SGTS+ +
Sbjct: 105 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASDMLPNSTERAVTISGTSEAI--T 162
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 163 QCIYH--ICC 170
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
>gi|346473549|gb|AEO36619.1| hypothetical protein [Amblyomma maculatum]
Length = 320
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H GC++GR G + E+R +TGA+I+V C + IV+V G+ V
Sbjct: 122 RLLMHQSHAGCIIGRAGCRIKELRESTGANIKV----HGSCCPGSTERIVKVTGSPAVVV 177
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLPPFPE 124
D + I + + P+K P + H++ P F +
Sbjct: 178 DCIKQICDII--GVAPIKGLNKPYDPHNFDPEFSQ 210
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G+AV R L+ S+ G ++G+GG ++ +R+ ASI V P C P + I+ ++
Sbjct: 36 GRAVDVRFLLQSRNAGAIIGKGGTNINSLRKEFKASISV------PDCPGP-ERILSIVA 88
Query: 85 NYHSVQDALFHITSRLRE 102
+ ++ D L +I +L +
Sbjct: 89 DLDTLGDILLNIIPKLDD 106
>gi|427784321|gb|JAA57612.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp [Rhipicephalus
pulchellus]
Length = 334
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G RLL+H GC++GR G + E+R +TGA+I+V C + IV+V G
Sbjct: 119 GSESEMRLLMHQSHAGCIIGRAGCRIKELRESTGANIKV----HGSCCPGSTERIVKVTG 174
Query: 85 NYHSVQDALFHITSRLRETIFPMK-RPGPNNGHSYLPPFPE 124
+ V D + I + + P+K P + H++ P F +
Sbjct: 175 SPSVVVDCIKQICDIV--GVAPIKGLNKPYDPHNFDPEFAQ 213
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G+AV R L+ S+ G ++G+GG ++ +R+ ASI V P C P + I+ ++
Sbjct: 35 GRAVDVRFLLQSRNAGAIIGKGGSNINSLRKEFKASISV------PDCPGP-ERILSIVA 87
Query: 85 NYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
+ ++ + L +I +L + + NG S
Sbjct: 88 DLDTLGEILLNIIPKLDDRSMQFAQHTGQNGGS 120
>gi|171687621|ref|XP_001908751.1| hypothetical protein [Podospora anserina S mat+]
gi|170943772|emb|CAP69424.1| unnamed protein product [Podospora anserina S mat+]
Length = 500
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 220 FDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVV 279
D +S N P ES + A + I VI A + G+ N+S IRQ SGA
Sbjct: 113 VDTASSEAQANPPAESRDETAWIH---IRAVISSPEAATIIGKGGENVSKIRQSSGAKCT 169
Query: 280 VNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
V+D + GA E ++ VSG D A LI
Sbjct: 170 VSDYQKGAVERILTVSGVVDAAAKAFGLI 198
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 39/67 (58%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + + A
Sbjct: 427 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTDECNKMAL 486
Query: 306 SLIHAFI 312
+++ +
Sbjct: 487 YMLYTRL 493
>gi|344250996|gb|EGW07100.1| Kinesin-like protein KIF27 [Cricetulus griseus]
Length = 1648
Score = 46.6 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 321 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 380
Query: 306 SLIH 309
L+
Sbjct: 381 YLLQ 384
>gi|427797377|gb|JAA64140.1| Putative polyc-binding hnrnp-k protein hrb57a/hnrnp, partial
[Rhipicephalus pulchellus]
Length = 303
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H GC++GR G + E+R +TGA+I+V C + IV+V G+ V
Sbjct: 94 RLLMHQSHAGCIIGRAGCRIKELRESTGANIKV----HGSCCPGSTERIVKVTGSPSVVV 149
Query: 91 DALFHITSRLRETIFPMK-RPGPNNGHSYLPPFPE 124
D + I + + P+K P + H++ P F +
Sbjct: 150 DCIKQICDIV--GVAPIKGLNKPYDPHNFDPEFAQ 182
>gi|357615456|gb|EHJ69667.1| putative igf2 mRNA binding protein [Danaus plexippus]
Length = 599
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 4/83 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + ++V S Q+G ++G+GG V E++R TG+ I++ + Q
Sbjct: 424 IFEKMREEGFMSGSDDVRLTVAIVVASSQVGRIIGKGGQNVRELQRVTGSLIKLPEQPQP 483
Query: 70 PR-CGSPHDEIVQVIGNYHSVQD 91
P G+ H+ V ++G+++SVQ+
Sbjct: 484 PTAAGNDHETTVHIVGHFYSVQE 506
>gi|324505572|gb|ADY42393.1| Heterogeneous nuclear ribonucleoprotein K [Ascaris suum]
Length = 415
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLLVH G ++GRGG+ + E+R T ++V+ + C + ++Q+IG +
Sbjct: 192 RLLVHQSHAGAIIGRGGYRIKELREETSTQLKVYSQC----CPQSTERVIQIIGVPEKII 247
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPF 122
+ I + L+E P+K P P Y P F
Sbjct: 248 ACVILIINMLKE--IPIKGPSRPYESMFYDPNF 278
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP + G+ ++ IR+ SGA++VV +P +E ++ +SG+ Q++ AQ
Sbjct: 337 TTQVTIPNELGGTIIGKGGERINRIREESGAHIVVEPQQPN-SERIITISGSHAQIQTAQ 395
Query: 306 SLIHAFI 312
L+ +
Sbjct: 396 YLLQQCV 402
>gi|392333155|ref|XP_003752811.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ Q
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNTQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|195401780|ref|XP_002059489.1| GJ19833 [Drosophila virilis]
gi|194150778|gb|EDW66460.1| GJ19833 [Drosophila virilis]
Length = 315
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
RLL+H GC++G+GG + E+R G + AP+ D +VQ +G V
Sbjct: 14 VRLLIHPSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQ---STDRVVQTVGKQSQV 70
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLP 120
DA+ + + R+T P+K P H+Y P
Sbjct: 71 IDAVRDVITLTRDT--PIKGP----IHNYDP 95
>gi|326500580|dbj|BAK06379.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 471
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 4 SPAQDAVMRVHSRIAEI-GFEPG--------QAVVARLLVHSQQIGCLLGRGGHIVSEMR 54
+PA DA +R+ + +I G P + ARLLV Q L+G+ G + M+
Sbjct: 154 APAMDAAVRIFKHVNDIEGINPDFTLPVSGPEICSARLLVPKAQGRHLIGKQGTTIQLMQ 213
Query: 55 RATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLR 101
+TG +IR+ KD+ + IV++ G V +AL + LR
Sbjct: 214 ESTGTTIRIIDKDELLSNQMVEERIVEIRGASLKVLNALKSVLGLLR 260
Score = 41.2 bits (95), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 240 AILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSD 299
++++ T + IP + G ++HIR +SGA VV+ + E +V + GTS
Sbjct: 342 SLISKITQTMRIPLPQAEEIIGVRGQTIAHIRSVSGAMVVLEETGNYLDEVLVSIEGTSS 401
Query: 300 QMRAAQSLIHAFIL 313
Q++ A LI +L
Sbjct: 402 QVQTAHQLIQEVLL 415
>gi|195154050|ref|XP_002017936.1| GL17034 [Drosophila persimilis]
gi|194113732|gb|EDW35775.1| GL17034 [Drosophila persimilis]
Length = 506
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+A + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 76 EATLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 135
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 136 VAPQS---TDRVVQTVGKQAQVIEAVREVITLTRDT 168
>gi|270007202|gb|EFA03650.1| hypothetical protein TcasGA2_TC013744 [Tribolium castaneum]
Length = 710
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 55/99 (55%), Gaps = 6/99 (6%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + ++V S Q+G ++G+GG V E++R TG+ I++ + +
Sbjct: 569 IFEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKLPEQGAS 628
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMK 108
P+ + V +IG + SVQ A I + + +++ P++
Sbjct: 629 PQ---EDETTVHIIGPFFSVQSAQRRIRAMVLQSVVPLQ 664
>gi|296081618|emb|CBI20623.3| unnamed protein product [Vitis vinifera]
Length = 479
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 80/188 (42%), Gaps = 30/188 (15%)
Query: 8 DAVMRVHSRIAEIGFEP---GQAVVARLL------------VHSQQIGCLLGRGGHIVSE 52
D + + I ++ E G +V+R L V + ++G ++G+GG +
Sbjct: 193 DQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGETIKN 252
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF---PMKR 109
M+ TGA I+V P P + + VQ+ G ++ A + + E M
Sbjct: 253 MQARTGARIQVIPL-HLPPGDTSMERTVQIDGTSEQIESAKQLVNEVISENRIRNPAMAG 311
Query: 110 PGPNNGHSYLPP----FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDR--GMGPSQP-- 161
P G+ PP P PP +P ++ A PGSYP P P ++M + G SQP
Sbjct: 312 GYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGPS-PQYNMSQPAYAGYSQPNA 370
Query: 162 --FDHQAA 167
+D AA
Sbjct: 371 TGWDQTAA 378
>gi|449667206|ref|XP_002160219.2| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Hydra
magnipapillata]
Length = 393
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP + G + +IRQ SGA++ + DP G + V+ ++GT DQ++ Q
Sbjct: 316 TTQVTIPNDLAGAIIGRGGERIRNIRQRSGADIKIQDPGEGKNDRVITITGTQDQIQYGQ 375
Query: 306 SLIHAFI 312
L+ +
Sbjct: 376 FLMQQSV 382
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSVQ 90
LVHS Q+G ++GR G + E+R T A+++VF + C + + +V + G +
Sbjct: 115 FLVHSSQVGGIIGRSGFKIKELREQTNANVKVFQE-----CLPNSTERVVALGGGEAEIV 169
Query: 91 DALFHITSRLRET 103
DAL I ++E+
Sbjct: 170 DALKKILEIMQES 182
>gi|170586586|ref|XP_001898060.1| KH domain containing protein [Brugia malayi]
gi|158594455|gb|EDP33039.1| KH domain containing protein [Brugia malayi]
Length = 451
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 70/283 (24%), Positives = 111/283 (39%), Gaps = 67/283 (23%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCG-SPHDEIVQVIGNYHSV 89
++LVH G ++GRGG + E+R TGA ++VF RC + IV + G +
Sbjct: 222 KVLVHESHAGAVIGRGGSRIKELREKTGAQLKVF-----SRCAPQSTERIVLLNGEVEKI 276
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPF 149
D + I L+E P+K P + P+ M ++P Y V
Sbjct: 277 IDCINIIIDVLKE--IPIKGP--------VRPYDPMY-------YDPDIISDYGGYVPDR 319
Query: 150 HSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSWTP 209
+ + R +G + F FS G+ P P D YG R G P P T
Sbjct: 320 NFISR-VGRGRDF----GFSSGIIPSRYPGRDD---RYGGMRDMMGRY---SPIPAMQTT 368
Query: 210 QGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSH 269
Q VE+ T TI P + G+ S ++
Sbjct: 369 Q----------------------VET-------TDVTI----PDELGGAIIGKGGSRINR 395
Query: 270 IRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+R+ SGA + V + + ++ +SGT +Q++AAQ L+ +
Sbjct: 396 VREESGAQIEVEPHRDNGGDRIITISGTREQIQAAQYLLQQCV 438
>gi|417398902|gb|JAA46484.1| Putative polyc-binding alphacp-1 [Desmodus rotundus]
Length = 320
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ +
Sbjct: 242 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 301
Query: 303 AAQSLIHA 310
AQ LI+A
Sbjct: 302 LAQYLINA 309
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|198458337|ref|XP_002138531.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
gi|198136305|gb|EDY69089.1| GA24337 [Drosophila pseudoobscura pseudoobscura]
Length = 505
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
+A + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 EATLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQAQVIEAVREVITLTRDT 167
>gi|410925642|ref|XP_003976289.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 1
[Takifugu rubripes]
Length = 430
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR GA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 356 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 415
Query: 306 SLIH 309
L+
Sbjct: 416 YLLQ 419
>gi|444517457|gb|ELV11574.1| Heterogeneous nuclear ribonucleoprotein K [Tupaia chinensis]
Length = 392
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + + G+ + IR SGA++ +++P G+ + ++ ++GT Q++ AQ
Sbjct: 318 TTQVTIPKDFAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQGQVQNAQ 377
Query: 306 SLIH 309
L+
Sbjct: 378 YLLQ 381
>gi|410925644|ref|XP_003976290.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Takifugu rubripes]
Length = 430
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR GA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 356 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 415
Query: 306 SLIH 309
L+
Sbjct: 416 YLLQ 419
>gi|339242773|ref|XP_003377312.1| poly(rC)-binding protein 3 [Trichinella spiralis]
gi|316973900|gb|EFV57443.1| poly(rC)-binding protein 3 [Trichinella spiralis]
Length = 410
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
+ RL+V + Q GCL+GRGG + ++R ATGASI+V
Sbjct: 110 ITFRLIVPATQCGCLIGRGGSKIKDIREATGASIQV 145
>gi|407917412|gb|EKG10721.1| K-like protein [Macrophomina phaseolina MS6]
Length = 488
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 407 GMMPGQPMTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERL 460
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 461 VTITGTQECNQMALYMLYSRLE 482
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/293 (23%), Positives = 123/293 (41%), Gaps = 40/293 (13%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+ G + E++ A+GA R+ D + +V +G +V
Sbjct: 218 RLLIPHILIGSIIGKSGVRIREIQEASGA--RLNASDSCLPLSTERSLVV--LGVADAVH 273
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP--------PFPEMPPPPFRPRHNPASPGSY 142
A +++ S L E + +R G +Y M P+ P+ PA G
Sbjct: 274 IATYYVGSTLVEQL--TERFGGPAASAYATRSGGPAGVVPGGMQVVPYVPQ--PA--GGQ 327
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFS---HGMDPMVPPNSDRIPFPYGSERPGHGPTFD 199
P FH GP A + HG P P + P YG+ P H T
Sbjct: 328 WGPPDTFHRK----GPQAQRTPAAGYGAPMHGQYPQQP----QAPLHYGAGSPRHAYTGA 379
Query: 200 RPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHV 259
P P+ + G P S P +P++ +T ++ IP + +
Sbjct: 380 GPHQPQQY-------GAPHVAQPSHAGQPA-QPMQGMMPGQPMTQ---QIFIPNDMVGAI 428
Query: 260 YGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT + + A ++++ +
Sbjct: 429 IGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQMALYMLYSRL 481
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ +I A V G+ N++ IR++SGA V+D GA E ++ VSG D + A
Sbjct: 134 VRAIISSAEAATVIGKGGENVTQIRRMSGAKCTVSDYSRGAVERILTVSGLVDAVAKAFG 193
Query: 307 LI 308
LI
Sbjct: 194 LI 195
>gi|297266217|ref|XP_002799331.1| PREDICTED: poly(rC)-binding protein 1-like, partial [Macaca
mulatta]
Length = 126
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ +
Sbjct: 48 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 107
Query: 303 AAQSLIHA 310
AQ LI+A
Sbjct: 108 LAQYLINA 115
>gi|6006748|gb|AAF00596.1|AF142631_1 hnRNP K protein homolog [Drosophila melanogaster]
Length = 490
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 167
>gi|359495228|ref|XP_002277528.2| PREDICTED: uncharacterized protein LOC100253453 [Vitis vinifera]
Length = 772
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 82/193 (42%), Gaps = 20/193 (10%)
Query: 21 GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH 76
GF QAV A ++ V ++++G ++G+GG + ++ +GA I++ P+ P
Sbjct: 261 GFATAQAVGAAEQVQIQVPNEKVGLIIGKGGETIKSLQTRSGARIQLIPQ-HLPEGDQSK 319
Query: 77 DEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMP-------PPP 129
+ V+V G+ ++ A I + + + PG N Y P P P P P
Sbjct: 320 ERTVRVTGDKKQIEMAREMIKEVMNQPVRSSTYPGSYNQQGYRPRGPTGPSQWGPRGPHP 379
Query: 130 FRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP------MVPPNSDRI 183
+P G+YPS + G P Q +++F G + PP S
Sbjct: 380 GQPTGYDYQRGAYPSQNQQYAPPSYGGYPPQQMAPRSSFGSGWEQRPPANMQGPPQSGGY 439
Query: 184 PFPYGSERPGHGP 196
F YG + GHGP
Sbjct: 440 DF-YGGQG-GHGP 450
>gi|146332457|gb|ABQ22734.1| poly (rC)-binding protein 1-like protein [Callithrix jacchus]
Length = 116
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ +
Sbjct: 38 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 97
Query: 303 AAQSLIHA 310
AQ LI+A
Sbjct: 98 LAQYLINA 105
>gi|24656342|ref|NP_665890.2| bancal, isoform B [Drosophila melanogaster]
gi|23240206|gb|AAM68390.2| bancal, isoform B [Drosophila melanogaster]
Length = 413
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
RLL+H GC++G+GG + E+R G + AP+ D +VQ +G V
Sbjct: 14 VRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSNVAPQS---TDRVVQTVGKQSQV 70
Query: 90 QDALFHITSRLRETIFPMK 108
+A+ + + R+T P+K
Sbjct: 71 IEAVREVITLTRDT--PIK 87
>gi|61661324|gb|AAX51268.1| FLK [Arabidopsis thaliana]
gi|61661326|gb|AAX51269.1| FLK [Arabidopsis thaliana]
Length = 577
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ T ++ IP Y V G + SN+S+ R++SGA V + + + E V VSGT Q
Sbjct: 454 VAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQ 513
Query: 301 MRAAQSLIHAFI 312
++ A LI F+
Sbjct: 514 VQTAVQLIQNFM 525
>gi|15229321|ref|NP_187112.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
gi|6175183|gb|AAF04909.1|AC011437_24 putative RNA-binding protein [Arabidopsis thaliana]
gi|17979249|gb|AAL49941.1| AT3g04610/F7O18_9 [Arabidopsis thaliana]
gi|332640585|gb|AEE74106.1| RNA-binding KH domain-containing protein [Arabidopsis thaliana]
Length = 577
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 241 ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQ 300
+ T ++ IP Y V G + SN+S+ R++SGA V + + + E V VSGT Q
Sbjct: 454 VAQQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQ 513
Query: 301 MRAAQSLIHAFI 312
++ A LI F+
Sbjct: 514 VQTAVQLIQNFM 525
>gi|242039711|ref|XP_002467250.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
gi|241921104|gb|EER94248.1| hypothetical protein SORBIDRAFT_01g022040 [Sorghum bicolor]
Length = 588
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 5 PAQDAVMRVHSR-IAEIGFEPGQ--AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI 61
PA DA++RV+ + I + + G +V R+LV S+Q L+G G +++ + A+ I
Sbjct: 116 PAMDALLRVYQQTINDESLDVGSDGVIVRRILVPSEQAESLIGEHGVMINSIMEASQTDI 175
Query: 62 RVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
RV D P D +V++ G V AL + S LR+ +
Sbjct: 176 RVLDGDLPP-VALEEDRVVEIWGLPARVHKALELVASHLRKYLV 218
>gi|322801544|gb|EFZ22205.1| hypothetical protein SINV_16423 [Solenopsis invicta]
Length = 327
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
T+ +V IP+ + G+ + + IR SGA + +++P PG+ + ++ ++G Q++
Sbjct: 260 KTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQM 319
Query: 304 AQSLIH 309
AQ L+
Sbjct: 320 AQYLLQ 325
>gi|8699624|gb|AAF78762.1|AF275629_1 bancal protein [Drosophila melanogaster]
Length = 508
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 167
>gi|328787572|ref|XP_393878.3| PREDICTED: IGF-II mRNA-binding protein [Apis mellifera]
gi|380027404|ref|XP_003697415.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Apis florea]
Length = 626
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ + Q+
Sbjct: 473 IFEKMREEGFVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSIIK-LSEQQS 531
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + VQ+IG + SVQ A I
Sbjct: 532 TSPSADEEATVQIIGPFFSVQSAQRRI 558
>gi|398389867|ref|XP_003848394.1| hypothetical protein MYCGRDRAFT_111290 [Zymoseptoria tritici
IPO323]
gi|339468269|gb|EGP83370.1| hypothetical protein MYCGRDRAFT_111290 [Zymoseptoria tritici
IPO323]
Length = 879
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D ++ +
Sbjct: 413 GMVPGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNN------NERL 466
Query: 80 VQVIGNYHSVQDALFHITSRLRET-IFPMKR 109
V + G Q AL+ + SRL T + P ++
Sbjct: 467 VTITGTQECNQMALYMLYSRLVPTGVLPTRQ 497
Score = 40.8 bits (94), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 41/68 (60%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ E +V ++GT + + A
Sbjct: 421 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQECNQMAL 480
Query: 306 SLIHAFIL 313
++++ ++
Sbjct: 481 YMLYSRLV 488
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ +I A V G+ N++ IR+++GA V++ GA E ++ VSG D + A
Sbjct: 137 VRAIISSAEAATVIGKGGENVTQIRKMAGAKCTVSEYTRGAVERILTVSGLVDAVAKAFG 196
Query: 307 LI 308
LI
Sbjct: 197 LI 198
>gi|47219921|emb|CAF97191.1| unnamed protein product [Tetraodon nigroviridis]
Length = 339
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR GA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 274 TTQVTIPKDLAGSIIGKGGQRIKQIRHECGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 333
Query: 306 SLIH 309
L+
Sbjct: 334 YLLQ 337
>gi|402086578|gb|EJT81476.1| Poly(rC)-binding protein 3 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 486
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IRQ+SGA V+D + GA E ++ VSG D + A
Sbjct: 128 IRAVISSPEAATVIGKGGENVSKIRQLSGAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ IP + + G+ + ++ IRQISG+ + +N+P+ + E +V ++GT + R
Sbjct: 411 SLTQQIYIPNDMVGAIIGKGGTKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRM 470
Query: 304 AQSLIHAFI 312
A ++++ +
Sbjct: 471 ALYMLYSRL 479
>gi|391348567|ref|XP_003748518.1| PREDICTED: poly(rC)-binding protein 3-like [Metaseiulus
occidentalis]
Length = 418
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S+T E+ IP + V G+ ++ IRQ+SGA + ++ + G+ E V +SGT + +
Sbjct: 304 SSTQEMQIPNDLIGCVIGKGGQKINEIRQLSGATIKISSTEEGSKERCVSISGTPEAINL 363
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 364 AQYLIN 369
>gi|224116392|ref|XP_002317286.1| predicted protein [Populus trichocarpa]
gi|222860351|gb|EEE97898.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQA-------VVARLLVHSQQIGCLLGRGGHIVSEMRRATG 58
AQDA+++VH+ I+ G + ++LV + Q ++G+ G + +R T
Sbjct: 110 AQDALLKVHAAISNAVASLGDSDKRLRDKEECQILVPASQSANIIGKAGATIKRLRSKTR 169
Query: 59 ASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITS 98
SI++ KD C D + + G +V+ ALF +++
Sbjct: 170 TSIKIIAKDSTDPTHSCAMDFDNFLLITGESEAVKKALFAVSA 212
>gi|45552765|ref|NP_995907.1| bancal, isoform A [Drosophila melanogaster]
gi|442624312|ref|NP_001261102.1| bancal, isoform F [Drosophila melanogaster]
gi|21626883|gb|AAF57450.2| bancal, isoform A [Drosophila melanogaster]
gi|189182182|gb|ACD81867.1| LP16172p [Drosophila melanogaster]
gi|440214543|gb|AGB93634.1| bancal, isoform F [Drosophila melanogaster]
Length = 496
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 134
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 135 VAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 167
>gi|357603478|gb|EHJ63796.1| Heterogeneous nuclear ribonucleoprotein K [Danaus plexippus]
Length = 264
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT +V IP+ + G+ S + IR SGA + + +P PGA + ++ ++GT +++
Sbjct: 184 ETTTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGAADRIITITGTPPRIQK 243
Query: 304 AQSLIH 309
AQ L+
Sbjct: 244 AQYLLQ 249
>gi|326935103|ref|XP_003213618.1| PREDICTED: UPF0553 protein C9orf64-like, partial [Meleagris
gallopavo]
Length = 400
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 52 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 111
Query: 306 SLIH 309
L+
Sbjct: 112 YLLQ 115
>gi|75765942|pdb|1ZZI|A Chain A, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
gi|75765943|pdb|1ZZI|B Chain B, Crystal Structure Analysis Of The Third Kh Domain Of Hnrnp
K In Complex With Ssdna
gi|75765946|pdb|1ZZJ|A Chain A, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765947|pdb|1ZZJ|B Chain B, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765948|pdb|1ZZJ|C Chain C, Structure Of The Third Kh Domain Of Hnrnp K In Complex
With 15-Mer Ssdna
gi|75765950|pdb|1ZZK|A Chain A, Crystal Structure Of The Third Kh Domain Of Hnrnp K At
0.95a Resolution
Length = 82
Score = 45.4 bits (106), Expect = 0.031, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 8 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 67
Query: 306 SLIH 309
L+
Sbjct: 68 YLLQ 71
>gi|345311367|ref|XP_001520914.2| PREDICTED: poly(rC)-binding protein 4-like [Ornithorhynchus
anatinus]
Length = 447
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +Q G H
Sbjct: 272 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQTEGSGERH--- 326
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP-PF-PEMPPPPFRPRHNPA 137
V + G+ S+ A + IT+ L ET P +G S LP PF P + P P A
Sbjct: 327 VTITGSPVSIALAQYLITACL-ETAKSTSAGTPGSGPSDLPAPFSPPLAPSPALTALPTA 385
Query: 138 SPGSYPSPVGPFHSMDRGMGPSQPF 162
PG +P S G+ P PF
Sbjct: 386 PPGLLGTPYAISLSNFIGLKP-MPF 409
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + G+ E V ++G+ + AQ L
Sbjct: 283 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQTEGSGERHVTITGSPVSIALAQYL 342
Query: 308 IHAFI 312
I A +
Sbjct: 343 ITACL 347
>gi|108709930|gb|ABF97725.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
Length = 389
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 4 SPAQDAVMRVHSRIAE----IGFEPGQAVV----ARLLVHSQQIGCLLGRGGHIVSEMRR 55
SPA D + RV+ RI + +P + + RLLV + Q G L+G+ G + ++
Sbjct: 168 SPAMDGLFRVYKRITDGSDGDSGQPERNISNVGPTRLLVPASQAGSLIGKQGATIKSIQD 227
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
++ + +R+ + P D +V++ G VQ AL I S LR+ +
Sbjct: 228 SSKSIVRIV--ETLPLVALNDDRVVEIQGEPVGVQKALESIASHLRKFL 274
>gi|157108094|ref|XP_001650073.1| heterogeneous nuclear ribonucleoprotein k [Aedes aegypti]
gi|108868581|gb|EAT32806.1| AAEL014959-PA [Aedes aegypti]
Length = 430
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 10/90 (11%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+LVH GC++GRGG + E++ G +++F + AP+ D I QVIG
Sbjct: 114 RILVHQSLAGCVIGRGGTKIKELKDQIGCRLKIFS-NIAPQ---STDRIAQVIGTEDQCL 169
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP 120
AL I ++ T P+K P H+Y P
Sbjct: 170 TALNDIIGLIQGT--PIKGP----VHNYDP 193
>gi|45552763|ref|NP_995906.1| bancal, isoform C [Drosophila melanogaster]
gi|45445681|gb|AAM68389.2| bancal, isoform C [Drosophila melanogaster]
gi|261338783|gb|ACX70073.1| RE05515p [Drosophila melanogaster]
Length = 502
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
++ + + + + + E + RLL+H GC++G+GG + E+R G +
Sbjct: 81 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFSN 140
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
AP+ D +VQ +G V +A+ + + R+T
Sbjct: 141 VAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 173
>gi|451855342|gb|EMD68634.1| hypothetical protein COCSADRAFT_350318 [Cochliobolus sativus
ND90Pr]
Length = 488
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 18 AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPH 76
A +G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + +
Sbjct: 404 APVGAIPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNS------N 457
Query: 77 DEIVQVIGNYHSVQDALFHITSRLR 101
+ +V + G Q AL+ + SRL
Sbjct: 458 ERLVTITGTQECNQMALYMLYSRLE 482
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%)
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
RPV S + I A + G+ N++ IR++SGA V+D GA E
Sbjct: 115 RPVNSNQQVDETNWLHVRACIGTSEAATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVER 174
Query: 291 VVMVSGTSDQMRAAQSLI 308
++ VSG D + A LI
Sbjct: 175 ILTVSGQVDAVSKAFGLI 192
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A
Sbjct: 415 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSNERLVTITGTQECNQMAL 474
Query: 306 SLIHAFI 312
++++ +
Sbjct: 475 YMLYSRL 481
>gi|307189125|gb|EFN73581.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Camponotus
floridanus]
Length = 587
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E G+ G + +LV S Q+G ++G+GG V E++R TG+ I+ + QA
Sbjct: 433 IFEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIK-LSEQQA 491
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
+ + V +IG + SVQ A R+R + PG +G
Sbjct: 492 TPPSAEEETTVHIIGPFFSVQSA----QRRIRAMVLQSGTPGGTSG 533
>gi|195430448|ref|XP_002063267.1| GK21481 [Drosophila willistoni]
gi|194159352|gb|EDW74253.1| GK21481 [Drosophila willistoni]
Length = 505
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPK 66
++ + + + + + E + RLL+H GC++G+GG + E+R G ++VF
Sbjct: 74 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFS- 132
Query: 67 DQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+ AP+ D +VQ +G V +A+ + + R+T
Sbjct: 133 NVAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 166
>gi|392353290|ref|XP_003751453.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Rattus
norvegicus]
Length = 463
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ ++P G+ + ++ ++GT DQ++ Q
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKTDEPLEGSEDRIITITGTQDQIQNTQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|402886179|ref|XP_003906515.1| PREDICTED: poly(rC)-binding protein 2 [Papio anubis]
Length = 340
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 219 GFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
GF +P + +G A+ T T+ E+ IP + + G + ++ IRQ+SGA +
Sbjct: 238 GFSGIESSSPEVKGYWAGLDASAQT-TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQI 296
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
+ +P G+T+ V ++G++ + AQ LI+
Sbjct: 297 KIANPVEGSTDRQVTITGSAASISLAQYLIN 327
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
>gi|351695057|gb|EHA97975.1| Heterogeneous nuclear ribonucleoprotein K [Heterocephalus glaber]
Length = 445
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SG ++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 370 TTQVTIPKDLAGSIIGKGAQQIKQIRHESGVSIKIDEPLEGSEDRIITITGTQDQIQNAQ 429
Query: 306 SLIH 309
L+
Sbjct: 430 YLLQ 433
>gi|452004384|gb|EMD96840.1| hypothetical protein COCHEDRAFT_1220374 [Cochliobolus
heterostrophus C5]
Length = 489
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 48/85 (56%), Gaps = 7/85 (8%)
Query: 18 AEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPH 76
A +G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + +
Sbjct: 405 APVGSIPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNS------N 458
Query: 77 DEIVQVIGNYHSVQDALFHITSRLR 101
+ +V + G Q AL+ + SRL
Sbjct: 459 ERLVTITGTQECNQMALYMLYSRLE 483
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 36/78 (46%)
Query: 231 RPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEG 290
RPV S I I A + G+ N++ IR++SGA V+D GA E
Sbjct: 115 RPVNSNQQVDETNWLHIRACIGTSEAATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVER 174
Query: 291 VVMVSGTSDQMRAAQSLI 308
++ VSG D + A LI
Sbjct: 175 ILTVSGQVDAVSKAFGLI 192
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A
Sbjct: 416 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|108862919|gb|ABA99242.2| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|222617409|gb|EEE53541.1| hypothetical protein OsJ_36750 [Oryza sativa Japonica Group]
Length = 517
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 5 PAQDAVMRVHSRIAE-IGFEPGQAVVA-------RLLVHSQQIGCLLGRGGHIVSEMRRA 56
PA D ++RVH RI + + E Q A RLLV + Q G L+G+ G + ++ A
Sbjct: 176 PAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQDA 235
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ +R+ + P D +V++ G V A+ I S LR+ +
Sbjct: 236 SKCVLRIL--ESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLRKFLV 282
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P Y V G +++S+IR+ SGA + + + PG E V +SG++ Q++ AQ LI
Sbjct: 396 VPLSYADAVIGAAGASISYIRRHSGATISIQEGVPG--EMTVEISGSASQVQTAQQLIKN 453
Query: 311 FI 312
F+
Sbjct: 454 FM 455
>gi|225429462|ref|XP_002278761.1| PREDICTED: uncharacterized protein LOC100259454 [Vitis vinifera]
Length = 690
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 72/169 (42%), Gaps = 24/169 (14%)
Query: 8 DAVMRVHSRIAEIGFEP---GQAVVARLL------------VHSQQIGCLLGRGGHIVSE 52
D + + I ++ E G +V+R L V + ++G ++G+GG +
Sbjct: 193 DQIAKAEQLINDVLSEAEAGGSGIVSRRLTGQAGSEQFVMKVPNNKVGLIIGKGGETIKN 252
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF---PMKR 109
M+ TGA I+V P P S + VQ+ G ++ A + + E M
Sbjct: 253 MQARTGARIQVIPLHLPPGDTS-MERTVQIDGTSEQIESAKQLVNEVISENRIRNPAMAG 311
Query: 110 PGPNNGHSYLPP----FPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDR 154
P G+ PP P PP +P ++ A PGSYP P P ++M +
Sbjct: 312 GYPQQGYQARPPSGWGAPPGAPPMQQPGYSYAQPGSYPGPS-PQYNMSQ 359
>gi|383862495|ref|XP_003706719.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Megachile
rotundata]
Length = 560
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 104 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 159
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 160 AITQCIYHICCVMLES 175
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 369 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 426
Query: 91 DALFHIT 97
A + I+
Sbjct: 427 LAQYLIS 433
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
TP GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 331 TPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 388
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLI 308
+ IRQISGA + +++ + GAT+ + ++G D + AQ LI
Sbjct: 389 AEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLI 432
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V ++ P +TE V +SGTS+ +
Sbjct: 105 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAI--T 162
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 163 QCIYH--ICC 170
>gi|330914909|ref|XP_003296833.1| hypothetical protein PTT_07029 [Pyrenophora teres f. teres 0-1]
gi|311330863|gb|EFQ95085.1| hypothetical protein PTT_07029 [Pyrenophora teres f. teres 0-1]
Length = 485
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDE 78
+G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + ++
Sbjct: 408 VGAMPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNS------NER 461
Query: 79 IVQVIGNYHSVQDALFHITSRL 100
+V + G Q AL+ + SRL
Sbjct: 462 LVTITGTQECNQMALYMLYSRL 483
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A
Sbjct: 417 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSNERLVTITGTQECNQMAL 476
Query: 306 SLIHAFI 312
++++ +
Sbjct: 477 YMLYSRL 483
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
A + G+ N++ IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 142 ATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQVDAVSKAFGLI 193
>gi|108862918|gb|ABG22073.1| FLK, putative, expressed [Oryza sativa Japonica Group]
gi|215694782|dbj|BAG89973.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 355
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 5 PAQDAVMRVHSRIAE-IGFEPGQAVVA-------RLLVHSQQIGCLLGRGGHIVSEMRRA 56
PA D ++RVH RI + + E Q A RLLV + Q G L+G+ G + ++ A
Sbjct: 14 PAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQDA 73
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ +R+ + P D +V++ G V A+ I S LR+ +
Sbjct: 74 SKCVLRIL--ESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLRKFLV 120
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P Y V G +++S+IR+ SGA + + + PG E V +SG++ Q++ AQ LI
Sbjct: 234 VPLSYADAVIGAAGASISYIRRHSGATISIQEGVPG--EMTVEISGSASQVQTAQQLIKN 291
Query: 311 FI 312
F+
Sbjct: 292 FM 293
>gi|367043886|ref|XP_003652323.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
gi|346999585|gb|AEO65987.1| hypothetical protein THITE_2113686 [Thielavia terrestris NRRL 8126]
Length = 482
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IRQ+SGA V+D + GA E ++ VSG D + A
Sbjct: 125 IRAVISSPEAATVIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 184
Query: 307 LI 308
LI
Sbjct: 185 LI 186
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 409 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRIAL 468
Query: 306 SLIHAFI 312
++++ +
Sbjct: 469 YMLYSRL 475
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 404 PGAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTI 457
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 458 TGTEECNRIALYMLYSRLE 476
>gi|308798891|ref|XP_003074225.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
gi|116000397|emb|CAL50077.1| putative nucleic acid binding protein (ISS) [Ostreococcus tauri]
Length = 402
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMR-RATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86
V RLLV + Q G L+G+GG + E+R RA GA + V Q P C + D +V++ G
Sbjct: 137 VTLRLLVPAGQAGHLIGKGGENIQEVRKRANGAHVAVQEVGQVPPCATSEDRVVEIHGKP 196
Query: 87 HSVQDALFHITSRLRETIF 105
V+ A + L++ +
Sbjct: 197 KDVRVAADAVFESLKDYLV 215
>gi|22218811|pdb|1J5K|A Chain A, Complex Of The Kh3 Domain Of Hnrnp K With A
Single_stranded 10mer Dna Oligonucleotide
Length = 89
Score = 45.1 bits (105), Expect = 0.039, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 15 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Query: 306 SLIH 309
L+
Sbjct: 75 YLLQ 78
>gi|328723977|ref|XP_001952825.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 1 [Acyrthosiphon pisum]
Length = 563
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 13 VHSRIAEIGFEPGQAVV---ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ + GF P V +LV S Q+G ++GRGG V E++R TG+ I++ Q
Sbjct: 448 IFDKLRDEGFVPNNEEVRLTVEILVPSSQVGRIIGRGGSNVRELQRVTGSIIKL--PTQG 505
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
G+ V +IG++ + Q A I S + P+ RP N
Sbjct: 506 STDGTEDTTTVHIIGHFLATQSAQRRIRSMVASGANPVPRPQQRN 550
>gi|328723973|ref|XP_003247998.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 3 [Acyrthosiphon pisum]
gi|328723975|ref|XP_003247999.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 4 [Acyrthosiphon pisum]
Length = 553
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 13 VHSRIAEIGFEPGQAVV---ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ + GF P V +LV S Q+G ++GRGG V E++R TG+ I++ Q
Sbjct: 442 IFDKLRDEGFVPNNEEVRLTVEILVPSSQVGRIIGRGGSNVRELQRVTGSIIKL--PTQG 499
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
G+ V +IG++ + Q A I S + P+ RP N
Sbjct: 500 STDGTEDTTTVHIIGHFLATQSAQRRIRSMVASGANPVPRPQQRN 544
>gi|195592300|ref|XP_002085873.1| GD15007 [Drosophila simulans]
gi|194197882|gb|EDX11458.1| GD15007 [Drosophila simulans]
Length = 180
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 87 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 144
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 145 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 178
>gi|307175339|gb|EFN65358.1| Poly(rC)-binding protein 3 [Camponotus floridanus]
Length = 547
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 90 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 145
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 146 AITQCIYHICCVMLES 161
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 355 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 412
Query: 91 DALFHI 96
A + I
Sbjct: 413 LAQYLI 418
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
TP GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 317 TPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 374
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ IRQISGA + +++ + GAT+ + ++G D + AQ LI+ +
Sbjct: 375 AEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLINMSV 422
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V ++ P +TE V +SGTS+ +
Sbjct: 91 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAI--T 148
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 149 QCIYH--ICC 156
>gi|328723971|ref|XP_003247997.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 2 [Acyrthosiphon pisum]
Length = 559
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 13 VHSRIAEIGFEPGQAVV---ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ + GF P V +LV S Q+G ++GRGG V E++R TG+ I++ Q
Sbjct: 448 IFDKLRDEGFVPNNEEVRLTVEILVPSSQVGRIIGRGGSNVRELQRVTGSIIKL--PTQG 505
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNN 114
G+ V +IG++ + Q A I S + P+ RP N
Sbjct: 506 STDGTEDTTTVHIIGHFLATQSAQRRIRSMVASGANPVPRPQQRN 550
>gi|449303999|gb|EMD00007.1| hypothetical protein BAUCODRAFT_359485 [Baudoinia compniacensis
UAMH 10762]
Length = 471
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 48/81 (59%), Gaps = 7/81 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 387 PGQPITQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQD------NNNERLVTI 440
Query: 83 IGNYHSVQDALFHITSRLRET 103
G Q AL+ + SRL E+
Sbjct: 441 TGTQECNQMALYMLYSRLGES 461
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ E +V ++GT + + A
Sbjct: 392 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNNNERLVTITGTQECNQMAL 451
Query: 306 SLIHAFI 312
++++ +
Sbjct: 452 YMLYSRL 458
>gi|45553235|ref|NP_996145.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|194876029|ref|XP_001973701.1| GG16232 [Drosophila erecta]
gi|195496648|ref|XP_002095782.1| GE22592 [Drosophila yakuba]
gi|16648354|gb|AAL25442.1| LD32520p [Drosophila melanogaster]
gi|45446078|gb|AAS65095.1| mushroom-body expressed, isoform C [Drosophila melanogaster]
gi|190655484|gb|EDV52727.1| GG16232 [Drosophila erecta]
gi|194181883|gb|EDW95494.1| GE22592 [Drosophila yakuba]
gi|220951950|gb|ACL88518.1| mub-PC [synthetic construct]
Length = 364
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 271 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 328
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 329 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 362
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|195022402|ref|XP_001985568.1| GH14429 [Drosophila grimshawi]
gi|193899050|gb|EDV97916.1| GH14429 [Drosophila grimshawi]
Length = 362
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 269 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 326
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 327 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 360
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G ++ A IT + E
Sbjct: 72 SGTTSAIFAAFTLITKKFEE 91
>gi|332019831|gb|EGI60292.1| Poly(rC)-binding protein 3 [Acromyrmex echinatior]
Length = 566
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 109 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 164
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 165 AITQCIYHICCVMLES 180
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 374 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 431
Query: 91 DALFHI 96
A + I
Sbjct: 432 LAQYLI 437
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 5/108 (4%)
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
TP GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 336 TPANTGGLNPAALAALAGSQLRTNNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 393
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ IRQISGA + +++ + GAT+ + ++G D + AQ LI+ +
Sbjct: 394 AEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLINMSV 441
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V ++ P +TE V +SGTS+ +
Sbjct: 110 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAI--T 167
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 168 QCIYH--ICC 175
>gi|386771593|ref|NP_730700.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|442634089|ref|NP_001262197.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
gi|383292066|gb|AAN12194.2| mushroom-body expressed, isoform G [Drosophila melanogaster]
gi|440216174|gb|AGB94890.1| mushroom-body expressed, isoform M [Drosophila melanogaster]
Length = 359
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 266 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 323
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 324 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 357
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|194753778|ref|XP_001959187.1| GF12183 [Drosophila ananassae]
gi|190620485|gb|EDV36009.1| GF12183 [Drosophila ananassae]
Length = 511
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 8 DAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPK 66
++ + + + + + E + RLL+H GC++G+GG + E+R G ++VF
Sbjct: 75 ESTLEIITEMLKYFEERDEDFDVRLLIHQSLAGCVIGKGGQKIKEIRDRIGCRFLKVFS- 133
Query: 67 DQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103
+ AP+ D +VQ +G V +A+ + + R+T
Sbjct: 134 NVAPQS---TDRVVQTVGKQSQVIEAVREVITLTRDT 167
>gi|425778068|gb|EKV16213.1| hypothetical protein PDIP_37280 [Penicillium digitatum Pd1]
gi|425780605|gb|EKV18611.1| hypothetical protein PDIG_09250 [Penicillium digitatum PHI26]
Length = 496
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 21/108 (19%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + S ++ +V +
Sbjct: 392 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----SSNERLVTIT 446
Query: 84 GNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFR 131
G Q AL+ + SRL + PPFP+ P P +
Sbjct: 447 GTAECNQMALYMLYSRL----------------GWSPPFPDFPSLPGK 478
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 112 IRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 171
Query: 307 LI 308
LI
Sbjct: 172 LI 173
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 41/67 (61%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 397 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQESSNERLVTITGTAECNQMAL 456
Query: 306 SLIHAFI 312
++++ +
Sbjct: 457 YMLYSRL 463
>gi|322698027|gb|EFY89801.1| hypothetical protein MAC_04233 [Metarhizium acridum CQMa 102]
Length = 456
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 126/294 (42%), Gaps = 44/294 (14%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D S +V +G +V
Sbjct: 188 RLLIPHILIGSIIGKGGARIREIQEASGA--RLNASDSCLPMSSERSLVV--MGVADAVH 243
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYL----PPFPEMP----PPPFRPRHNPASPGSY 142
A +++ S L E + +R G +Y P +P P+ P+ PAS G Y
Sbjct: 244 IATYYVGSTLLEQLN--ERFGGPAASAYATRSGAPAGSIPGGMQVVPYSPQ--PAS-GHY 298
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHG----PTF 198
P DR + A H PPN +P YG ++ +G T
Sbjct: 299 GRPENYGRHQDR---RAHHMPPAAYPPHYPHNAAPPNP-AMPMQYGGQQAAYGGAPHATQ 354
Query: 199 DRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAH 258
PP PQ GG P+ P++ G LT ++ IP +
Sbjct: 355 HMPPH---VGPQPHGG-------------PQGPPMQHGMPGGPLTQ---QIYIPNDMVGA 395
Query: 259 VYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R A ++++ +
Sbjct: 396 IIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTEECNRMALYMLYSRL 449
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 378 PGGPLTQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNS------NERLVTI 431
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 432 TGTEECNRMALYMLYSRLE 450
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG +
Sbjct: 110 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIA 161
>gi|195128219|ref|XP_002008562.1| GI13561 [Drosophila mojavensis]
gi|193920171|gb|EDW19038.1| GI13561 [Drosophila mojavensis]
Length = 362
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 269 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 326
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 327 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 360
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|195440454|ref|XP_002068057.1| GK10610 [Drosophila willistoni]
gi|194164142|gb|EDW79043.1| GK10610 [Drosophila willistoni]
Length = 363
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 270 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 327
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 328 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 361
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G ++ A IT + E
Sbjct: 72 SGTTSAIFSAFTLITKKFEE 91
>gi|169617928|ref|XP_001802378.1| hypothetical protein SNOG_12147 [Phaeosphaeria nodorum SN15]
gi|111059439|gb|EAT80559.1| hypothetical protein SNOG_12147 [Phaeosphaeria nodorum SN15]
Length = 485
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + ++ +V +
Sbjct: 409 PGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNS------NERLVTI 462
Query: 83 IGNYHSVQDALFHITSRLRE 102
G Q AL+ + SRL E
Sbjct: 463 TGTQECNQMALYMLYSRLGE 482
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 63/298 (21%), Positives = 116/298 (38%), Gaps = 46/298 (15%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+ G + E++ A+ A + P G + + V+G +V
Sbjct: 213 RLLIPHILIGSIIGKAGVRIREIQEASNAKLNAS-DTLLPNSG---ERSLVVLGVADAVH 268
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPAS---PGSY----- 142
A++++ L E + + GP + R A+ PG
Sbjct: 269 IAVYYVAQTLVEQLT-ERFGGPAASQ-------------YATRSGMAANVVPGGMSVQPY 314
Query: 143 -PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP-------FPYGSERPGH 194
P P G + +P A +G P + P + P PYG+ PG
Sbjct: 315 VPQPAGGQYQQPNNFRRQEPQRTPAHGGYGAAPHMQPGAPVHPSPYGQPQMPYGAGSPGR 374
Query: 195 GPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQL 254
P P + G P+G G P PV T ++ IP
Sbjct: 375 AHYGGPPQQPGPY-------GAPQGAPVPHGGPPNQPPVSMPGQ-----PLTQQIFIPND 422
Query: 255 YMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
+ + G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A ++++ +
Sbjct: 423 MVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSNERLVTITGTQECNQMALYMLYSRL 480
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
A + G+ N++ IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 139 ATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQVDAVSKAFGLI 190
>gi|297670563|ref|XP_002813434.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like isoform 2
[Pongo abelii]
Length = 464
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
G++A + T +V IP+ V G+ + I SGA++ +++P G+ + ++ ++
Sbjct: 377 GSYADLGGPITTQVTIPKDLAGSVIGKGGQRIKQICHESGASIKIDEPLEGSEDRIITIT 436
Query: 296 GTSDQMRAAQSLIH 309
GT +Q++ AQ L+
Sbjct: 437 GTQEQIQNAQYLLQ 450
>gi|340722699|ref|XP_003399741.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 2 [Bombus terrestris]
Length = 577
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ + Q+
Sbjct: 423 IFEKMREEGFVGGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSIIK-LSEQQS 481
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + VQ+IG + SVQ A I
Sbjct: 482 TSPSADEEATVQIIGPFFSVQSAQRRI 508
>gi|115489418|ref|NP_001067196.1| Os12g0597600 [Oryza sativa Japonica Group]
gi|113649703|dbj|BAF30215.1| Os12g0597600, partial [Oryza sativa Japonica Group]
Length = 367
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 5 PAQDAVMRVHSRIAE-IGFEPGQAVVA-------RLLVHSQQIGCLLGRGGHIVSEMRRA 56
PA D ++RVH RI + + E Q A RLLV + Q G L+G+ G + ++ A
Sbjct: 26 PAVDGLLRVHKRITDGLDGESDQPQRAAGTVGPTRLLVPASQAGSLIGKQGATIKSIQDA 85
Query: 57 TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ +R+ + P D +V++ G V A+ I S LR+ +
Sbjct: 86 SKCVLRIL--ESVPPVALSDDRVVEIQGEPLDVHKAVELIASHLRKFLV 132
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P Y V G +++S+IR+ SGA + + + PG E V +SG++ Q++ AQ LI
Sbjct: 246 VPLSYADAVIGAAGASISYIRRHSGATISIQEGVPG--EMTVEISGSASQVQTAQQLIKN 303
Query: 311 FI 312
F+
Sbjct: 304 FM 305
>gi|395733402|ref|XP_003776232.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like [Pongo
abelii]
Length = 462
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
G++A + T +V IP+ V G+ + I SGA++ +++P G+ + ++ ++
Sbjct: 377 GSYADLGGPITTQVTIPKDLAGSVIGKGGQRIKQICHESGASIKIDEPLEGSEDRIITIT 436
Query: 296 GTSDQMRAAQSLIH 309
GT +Q++ AQ L+
Sbjct: 437 GTQEQIQNAQYLLQ 450
>gi|357485429|ref|XP_003613002.1| hypothetical protein MTR_5g031530 [Medicago truncatula]
gi|355514337|gb|AES95960.1| hypothetical protein MTR_5g031530 [Medicago truncatula]
Length = 60
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 272 QISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQSLIHAFI 312
QISGA+V V DP G + G V++SGT DQ AAQSL+ AFI
Sbjct: 13 QISGADVTVFDPSSTGTSGGKVVISGTPDQTFAAQSLLQAFI 54
>gi|442634098|ref|NP_001262198.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
gi|440216175|gb|AGB94891.1| mushroom-body expressed, isoform L [Drosophila melanogaster]
Length = 368
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 275 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 332
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 333 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 366
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|402592326|gb|EJW86255.1| hypothetical protein WUBG_02833 [Wuchereria bancrofti]
Length = 313
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V + +RI E+ + ++LVH G ++GRGG + E+R G ++V+
Sbjct: 97 CVEMIIARIDEVHDNQDRDSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVY---- 152
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
+ C + I+Q+ G + L I + L+E P+K P
Sbjct: 153 SECCPQSTERIIQINGKPEKIVACLVTIINTLKE--IPIKGP 192
>gi|406866225|gb|EKD19265.1| KH domain RNA binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 545
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D + GA E ++ VSG D A
Sbjct: 122 IRAVITSAEAATVIGKGGENVSSIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKAFG 181
Query: 307 LI 308
LI
Sbjct: 182 LI 183
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 399 PGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERLVTI 452
Query: 83 IGNYHSVQDALFHITSRLR 101
G Q AL+ + SRL
Sbjct: 453 TGTAECNQMALYMLYSRLE 471
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 41/65 (63%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 404 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMAL 463
Query: 306 SLIHA 310
++++
Sbjct: 464 YMLYS 468
>gi|17737727|ref|NP_524208.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
gi|1770212|emb|CAA67719.1| nucleic acid binding protein [Drosophila melanogaster]
gi|7296507|gb|AAF51792.1| mushroom-body expressed, isoform A [Drosophila melanogaster]
Length = 386
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 293 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 350
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 351 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 384
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|340722697|ref|XP_003399740.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
isoform 1 [Bombus terrestris]
Length = 627
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ + Q+
Sbjct: 473 IFEKMREEGFVGGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSIIK-LSEQQS 531
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + VQ+IG + SVQ A I
Sbjct: 532 TSPSADEEATVQIIGPFFSVQSAQRRI 558
>gi|299116281|emb|CBN76089.1| poly(rc) binding protien (Partial) [Ectocarpus siliculosus]
Length = 334
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V+R+L+ + +IG ++G+GG I+ +R +GA + + G D +V G ++
Sbjct: 101 TVSRVLIPNCKIGAVIGKGGAIIKHIREVSGAKVTISDSCTGLH-GDSDDRMVTAAGTFN 159
Query: 88 SVQDALFHITS 98
SVQ A HI S
Sbjct: 160 SVQLAFTHILS 170
>gi|440905354|gb|ELR55741.1| Heterogeneous nuclear ribonucleoprotein K [Bos grunniens mutus]
Length = 464
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + I SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIHHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|390478281|ref|XP_002761548.2| PREDICTED: poly(rC)-binding protein 3 [Callithrix jacchus]
Length = 393
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 315 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 374
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 375 AQYLINARLTSEVT 388
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|119629731|gb|EAX09326.1| poly(rC) binding protein 3, isoform CRA_d [Homo sapiens]
Length = 393
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 315 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 374
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 375 AQYLINARLTSEVT 388
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|384947752|gb|AFI37481.1| poly(rC)-binding protein 3 isoform 1 [Macaca mulatta]
Length = 370
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|195161145|ref|XP_002021430.1| GL24805 [Drosophila persimilis]
gi|194118543|gb|EDW40586.1| GL24805 [Drosophila persimilis]
Length = 180
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 87 EMTVSDDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 144
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 145 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 178
>gi|332256670|ref|XP_003277439.1| PREDICTED: poly(rC)-binding protein 3 [Nomascus leucogenys]
Length = 393
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 315 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 374
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 375 AQYLINARLTSEVT 388
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|380798665|gb|AFE71208.1| poly(rC)-binding protein 3 isoform 1, partial [Macaca mulatta]
Length = 370
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 31 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 82
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 83 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 115
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 129 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 164
>gi|350424346|ref|XP_003493765.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Bombus impatiens]
Length = 626
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ + Q+
Sbjct: 473 IFEKMREEGFVGGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSIIK-LSEQQS 531
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + VQ+IG + SVQ A I
Sbjct: 532 TSPSADEEATVQIIGPFFSVQSAQRRI 558
>gi|332872312|ref|XP_001157899.2| PREDICTED: poly(rC)-binding protein 3 isoform 8 [Pan troglodytes]
gi|397506692|ref|XP_003823855.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Pan paniscus]
gi|426393341|ref|XP_004062983.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 371
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|109065035|ref|XP_001099540.1| PREDICTED: poly(rC)-binding protein 3-like isoform 4 [Macaca
mulatta]
Length = 370
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|315050398|ref|XP_003174573.1| Poly(rC)-binding protein 3 [Arthroderma gypseum CBS 118893]
gi|311339888|gb|EFQ99090.1| Poly(rC)-binding protein 3 [Arthroderma gypseum CBS 118893]
Length = 489
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 133 IRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 192
Query: 307 LI 308
LI
Sbjct: 193 LI 194
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 46/78 (58%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 411 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERLVTI 464
Query: 83 IGNYHSVQDALFHITSRL 100
G Q AL+ + SRL
Sbjct: 465 TGTQECNQMALYMLYSRL 482
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 41/67 (61%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|119629730|gb|EAX09325.1| poly(rC) binding protein 3, isoform CRA_c [Homo sapiens]
Length = 370
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|194306631|ref|NP_065389.2| poly(rC)-binding protein 3 isoform 1 [Homo sapiens]
gi|296439262|sp|P57721.2|PCBP3_HUMAN RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|119629729|gb|EAX09324.1| poly(rC) binding protein 3, isoform CRA_b [Homo sapiens]
Length = 371
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|189194345|ref|XP_001933511.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187979075|gb|EDU45701.1| Poly(rC)-binding protein 4 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 434
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 20 IGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDE 78
+G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + ++
Sbjct: 357 VGAMPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNS------NER 410
Query: 79 IVQVIGNYHSVQDALFHITSRL 100
+V + G Q AL+ + SRL
Sbjct: 411 LVTITGTQECNQMALYMLYSRL 432
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 257 AHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
A + G+ N++ IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 138 ATIIGKGGENVTQIRRLSGAKCTVSDYSRGAVERILTVSGQVDAVSKAFGLI 189
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P + E +V ++GT + + A
Sbjct: 366 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPTDNSNERLVTITGTQECNQMAL 425
Query: 306 SLIHAFI 312
++++ +
Sbjct: 426 YMLYSRL 432
>gi|114684793|ref|XP_001157578.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan troglodytes]
gi|397506694|ref|XP_003823856.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Pan paniscus]
gi|426393343|ref|XP_004062984.1| PREDICTED: poly(rC)-binding protein 3 [Gorilla gorilla gorilla]
Length = 351
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 273 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 332
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 333 AQYLINARLTSEVT 346
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|322796009|gb|EFZ18633.1| hypothetical protein SINV_09712 [Solenopsis invicta]
Length = 440
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 109 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 164
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 165 AITQCIYHICCVMLES 180
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN +V
Sbjct: 374 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGATDRTITITGNPDAVA 431
Query: 91 DALFHITSR 99
A + I R
Sbjct: 432 LAQYLINMR 440
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 208 TPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
TP GG +P A +G R AA + T E+ +P + + G+ + +
Sbjct: 336 TPANTGGLNPAALAALAGSQLRTSNTNRQQPAA--NNQTHEMTVPNELIGCIIGKGGTKI 393
Query: 268 SHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIH 309
+ IRQISGA + +++ + GAT+ + ++G D + AQ LI+
Sbjct: 394 AEIRQISGAMIRISNCEEREGGATDRTITITGNPDAVALAQYLIN 438
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV R +GA I + GS + IV V
Sbjct: 13 DPSVTLTIRLIMQGKEVGSIIGKKGEIVKRFREESGAKINISD-------GSCPERIVTV 65
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +S+ A I + E
Sbjct: 66 TGPTNSIFKAFTLICKKFEE 85
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V ++ P +TE V +SGTS+ +
Sbjct: 110 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAI--T 167
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 168 QCIYH--ICC 175
>gi|62738324|pdb|1WVN|A Chain A, Crsytal Structure Of Domain 3 Of Human Alpha Polyc Binding
Protein
Length = 82
Score = 44.7 bits (104), Expect = 0.058, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+ TT E+ IP + + G +N++ IRQ+SGA + + +P G++ V ++G++ +
Sbjct: 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASIS 63
Query: 303 AAQSLIHA 310
AQ LI+A
Sbjct: 64 LAQYLINA 71
>gi|74195705|dbj|BAE39657.1| unnamed protein product [Mus musculus]
Length = 463
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + + + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIVKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|302509454|ref|XP_003016687.1| hypothetical protein ARB_04979 [Arthroderma benhamiae CBS 112371]
gi|327303250|ref|XP_003236317.1| KH domain RNA binding protein [Trichophyton rubrum CBS 118892]
gi|291180257|gb|EFE36042.1| hypothetical protein ARB_04979 [Arthroderma benhamiae CBS 112371]
gi|326461659|gb|EGD87112.1| KH domain RNA binding protein [Trichophyton rubrum CBS 118892]
Length = 483
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 133 IRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 192
Query: 307 LI 308
LI
Sbjct: 193 LI 194
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +V +
Sbjct: 411 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERLVTI 464
Query: 83 IGNYHSVQDALFHITSRL 100
G Q AL+ + SRL
Sbjct: 465 TGTQECNQMALYMLYSRL 482
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|356495760|ref|XP_003516741.1| PREDICTED: uncharacterized protein LOC100800173 [Glycine max]
Length = 793
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Query: 21 GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH 76
G P QA V ++ V ++++G ++GRGG + ++ +GA I++ P+ P
Sbjct: 283 GLSPAQATVGSEQIQIQVPNEKVGLIIGRGGETIKSLQTKSGARIQLIPQ-HLPEGDDSK 341
Query: 77 DEIVQVIGNYHSVQDALFHITSRLRETIFP 106
+ VQV G+ ++ A I + + + P
Sbjct: 342 ERTVQVTGDKRQIEIAQELIKEVMNQPVRP 371
>gi|326469510|gb|EGD93519.1| KH domain RNA binding protein [Trichophyton tonsurans CBS 112818]
gi|326478964|gb|EGE02974.1| KH domain RNA binding protein [Trichophyton equinum CBS 127.97]
Length = 483
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 133 IRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 192
Query: 307 LI 308
LI
Sbjct: 193 LI 194
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +V +
Sbjct: 411 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERLVTI 464
Query: 83 IGNYHSVQDALFHITSRL 100
G Q AL+ + SRL
Sbjct: 465 TGTQECNQMALYMLYSRL 482
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|302655788|ref|XP_003019678.1| hypothetical protein TRV_06307 [Trichophyton verrucosum HKI 0517]
gi|291183415|gb|EFE39033.1| hypothetical protein TRV_06307 [Trichophyton verrucosum HKI 0517]
Length = 483
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 133 IRAVISSAEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 192
Query: 307 LI 308
LI
Sbjct: 193 LI 194
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +V +
Sbjct: 411 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERLVTI 464
Query: 83 IGNYHSVQDALFHITSRL 100
G Q AL+ + SRL
Sbjct: 465 TGTQECNQMALYMLYSRL 482
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|270001418|gb|EEZ97865.1| hypothetical protein TcasGA2_TC000237 [Tribolium castaneum]
Length = 415
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 102 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTGE 157
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + + E+
Sbjct: 158 AITQCIYHICTVMLES 173
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 8/92 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ D R D + + GN +V
Sbjct: 322 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDD--RESGVTDRTITISGNPDAVA 379
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPP 121
A + I R+ M+ G P G+ Y+ P
Sbjct: 380 LAQYLINMRIS-----METAGLPMPGYHYIAP 406
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVV---NDPKPGATEGVVMVSGTSDQMRAA 304
E+ +P + + G+ + ++ IRQISGA + + +D + G T+ + +SG D + A
Sbjct: 322 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCDDRESGVTDRTITISGNPDAVALA 381
Query: 305 QSLIHAFI 312
Q LI+ I
Sbjct: 382 QYLINMRI 389
>gi|403297203|ref|XP_003939468.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 371
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|195348691|ref|XP_002040881.1| GM22416 [Drosophila sechellia]
gi|194122391|gb|EDW44434.1| GM22416 [Drosophila sechellia]
Length = 302
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 8/98 (8%)
Query: 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 210 MTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVAL 267
Query: 92 ALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 268 AQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 300
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|156030905|ref|XP_001584778.1| hypothetical protein SS1G_14233 [Sclerotinia sclerotiorum 1980]
gi|154700624|gb|EDO00363.1| hypothetical protein SS1G_14233 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 487
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 404 GAIPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERL 457
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 458 VTITGTAECNQMALYMLYSRLE 479
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A V G+ N+S +R++SGA V+D + GA E ++ VSG D + A
Sbjct: 129 VRSVITSAEAATVIGKGGENVSLVRKLSGAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 188
Query: 307 LI 308
LI
Sbjct: 189 LI 190
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 412 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMAL 471
Query: 306 SLIHAFI 312
++++ +
Sbjct: 472 YMLYSRL 478
>gi|148699887|gb|EDL31834.1| poly(rC) binding protein 3, isoform CRA_c [Mus musculus]
Length = 373
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 295 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 354
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 355 AQYLINARLTSEVT 368
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 35 KMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 86
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 87 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 119
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 168
>gi|312085525|ref|XP_003144713.1| hypothetical protein LOAG_09137 [Loa loa]
Length = 327
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V + +RI E+ + ++LVH G ++GRGG + E+R G ++V+
Sbjct: 97 CVEMIIARIDEVHDNQDRDSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVY---- 152
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
+ C + I+Q+ G + L I S L+E P+K P
Sbjct: 153 SECCPQSTERIIQINGKPEKIVACLVTIISTLKE--IPIKGP 192
>gi|440894425|gb|ELR46887.1| Poly(rC)-binding protein 3 [Bos grunniens mutus]
Length = 374
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 296 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 355
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 356 AQYLINARLTSEVT 369
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 35 KMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 86
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 87 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 119
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 133 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 168
>gi|3548819|gb|AAC34491.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 155
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 4 SPAQDAVMRVHS------------RIAEIGFEPGQAVV-ARLLVHSQQIGCLLGRGGHIV 50
PA DA+ +VH + GQ VV R+LV S QIG L+G+GG I+
Sbjct: 36 CPAFDALFKVHDMVVVEEFDDDDDYNDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPII 95
Query: 51 SEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+R T A IRV D P C I+ V N
Sbjct: 96 QTLRNDTNAQIRV-RNDNLPMCTEKARTILMVQRN 129
>gi|26330216|dbj|BAC28838.1| unnamed protein product [Mus musculus]
Length = 370
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 292 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 351
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 352 AQYLINARLTSEVT 365
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|403297205|ref|XP_003939469.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 351
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 273 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 332
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 333 AQYLINARLTSEVT 346
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|378731796|gb|EHY58255.1| hypothetical protein HMPREF1120_06267 [Exophiala dermatitidis
NIH/UT8656]
Length = 492
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +V +
Sbjct: 414 PGQPITQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERLVTI 467
Query: 83 IGNYHSVQDALFHITSRLR 101
G Q AL+ + SRL
Sbjct: 468 TGTQECNQMALYMLYSRLE 486
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 223 SSGFTPRNRPVESGNHAAILTSTT----IEVVIPQLYMAHVYGENNSNLSHIRQISGANV 278
++G P+ + S H+A T I VI A G+ N++ IR++SGA
Sbjct: 108 ATGAVPQTDRLPSQGHSAPTQDETNWIHIRAVISSAEAATCIGKGGENVTQIRKLSGAKC 167
Query: 279 VVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
V+D GA E ++ VSG+ + + A LI
Sbjct: 168 TVSDYSRGAVERILTVSGSQEAVSKAFGLI 197
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 419 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 478
Query: 306 SLIHAFI 312
++++ +
Sbjct: 479 YMLYSRL 485
>gi|170592745|ref|XP_001901125.1| KH domain containing protein [Brugia malayi]
gi|158591192|gb|EDP29805.1| KH domain containing protein [Brugia malayi]
Length = 354
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V + +RI E+ + ++LVH G ++GRGG + E+R G ++V+
Sbjct: 124 CVEMIIARIDEVHDNQNRDSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVY---- 179
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
+ C + I+Q+ G + L I + L+E P+K P
Sbjct: 180 SECCPQSTERIIQINGKPEKIVACLVTIINTLKE--IPIKGP 219
>gi|171906586|ref|NP_067543.2| poly(rC)-binding protein 3 [Mus musculus]
gi|296439279|sp|P57722.3|PCBP3_MOUSE RecName: Full=Poly(rC)-binding protein 3; AltName: Full=Alpha-CP3
gi|26348076|dbj|BAC37686.1| unnamed protein product [Mus musculus]
gi|148699881|gb|EDL31828.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699882|gb|EDL31829.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699883|gb|EDL31830.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
gi|148699888|gb|EDL31835.1| poly(rC) binding protein 3, isoform CRA_a [Mus musculus]
Length = 371
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|393908932|gb|EFO19357.2| hypothetical protein LOAG_09137 [Loa loa]
Length = 265
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V + +RI E+ + ++LVH G ++GRGG + E+R G ++V+
Sbjct: 35 CVEMIIARIDEVHDNQDRDSELKVLVHQSHAGAVIGRGGSRIKELREENGVDLKVY---- 90
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP 110
+ C + I+Q+ G + L I S L+E P+K P
Sbjct: 91 SECCPQSTERIIQINGKPEKIVACLVTIISTLKE--IPIKGP 130
>gi|347842448|emb|CCD57020.1| similar to KH domain RNA binding protein [Botryotinia fuckeliana]
Length = 488
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 405 GAIPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERL 458
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 459 VTITGTAECNQMALYMLYSRLE 480
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A V G+ N+S +R++SGA V+D + GA E ++ VSG D + A
Sbjct: 128 VRSVITSAEAATVIGKGGENVSLVRKLSGAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 413 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMAL 472
Query: 306 SLIHAFI 312
++++ +
Sbjct: 473 YMLYSRL 479
>gi|126343878|ref|XP_001381277.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Monodelphis
domestica]
Length = 214
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 136 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 195
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 196 AQYLINARLTSEVT 209
>gi|354476790|ref|XP_003500606.1| PREDICTED: poly(rC)-binding protein 3 [Cricetulus griseus]
gi|149043674|gb|EDL97125.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043675|gb|EDL97126.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043676|gb|EDL97127.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|149043677|gb|EDL97128.1| rCG61051, isoform CRA_a [Rattus norvegicus]
gi|344241934|gb|EGV98037.1| Poly(rC)-binding protein 3 [Cricetulus griseus]
Length = 371
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|402862105|ref|XP_003895410.1| PREDICTED: poly(rC)-binding protein 3-like isoform 1 [Papio anubis]
Length = 123
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 45 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 104
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 105 AQYLINARLTSEVT 118
>gi|338720838|ref|XP_001488421.3| PREDICTED: poly(rC)-binding protein 3 [Equus caballus]
Length = 393
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 315 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 374
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 375 AQYLINARLTSEVT 388
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|386771595|ref|NP_001246876.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
gi|383292067|gb|AFH04547.1| mushroom-body expressed, isoform H [Drosophila melanogaster]
Length = 433
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 8/99 (8%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 340 EMTVSNDLIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVA 397
Query: 91 DALFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPP 128
A + I R+ M+ G P G+ Y+ P + P
Sbjct: 398 LAQYLINMRI-----SMETAGLPIPGYHYIAPSAIVKTP 431
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|116180584|ref|XP_001220141.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88185217|gb|EAQ92685.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 485
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A + G+ N+S IRQ+SGA V+D + GA E ++ VSG D + A
Sbjct: 127 VRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 186
Query: 307 LI 308
LI
Sbjct: 187 LI 188
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 412 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 471
Query: 306 SLIHAFI 312
++++ +
Sbjct: 472 YMLYSRL 478
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 407 PGGPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTI 460
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 461 TGTEECNRMALYMLYSRLE 479
>gi|154319404|ref|XP_001559019.1| hypothetical protein BC1G_02183 [Botryotinia fuckeliana B05.10]
Length = 453
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 370 GAIPGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERL 423
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 424 VTITGTAECNQMALYMLYSRLE 445
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A V G+ N+S +R++SGA V+D + GA E ++ VSG D + A
Sbjct: 128 VRSVITSAEAATVIGKGGENVSLVRKLSGAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 378 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMAL 437
Query: 306 SLIHAFI 312
++++ +
Sbjct: 438 YMLYSRL 444
>gi|395851184|ref|XP_003798146.1| PREDICTED: poly(rC)-binding protein 3 [Otolemur garnettii]
Length = 361
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDIV 84
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|395529320|ref|XP_003766764.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Sarcophilus harrisii]
Length = 474
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 37/64 (57%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + +R SGA++ +++P G+ + ++ ++GT DQ++ A
Sbjct: 397 TTQVTIPKDLAGSIIGKGGQRIKQLRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAX 456
Query: 306 SLIH 309
L+
Sbjct: 457 YLLQ 460
>gi|90081810|dbj|BAE90186.1| unnamed protein product [Macaca fascicularis]
Length = 300
Score = 44.3 bits (103), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 222 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 281
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 282 AQYLINARLTSEVT 295
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 60 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 95
>gi|355560220|gb|EHH16906.1| hypothetical protein EGK_13160 [Macaca mulatta]
Length = 361
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|348554794|ref|XP_003463210.1| PREDICTED: poly(rC)-binding protein 3-like [Cavia porcellus]
Length = 384
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 306 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 365
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 366 AQYLINARLTSEVT 379
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 45 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 96
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 97 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 129
Score = 37.7 bits (86), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 143 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 178
>gi|395536909|ref|XP_003770451.1| PREDICTED: poly(rC)-binding protein 3 isoform 2 [Sarcophilus
harrisii]
Length = 361
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|367019960|ref|XP_003659265.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
gi|347006532|gb|AEO54020.1| hypothetical protein MYCTH_2296066 [Myceliophthora thermophila ATCC
42464]
Length = 482
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A + G+ N+S IRQ+SGA V+D + GA E ++ VSG D + A
Sbjct: 125 VRAVISSPEAATIIGKGGENVSKIRQMSGAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 184
Query: 307 LI 308
LI
Sbjct: 185 LI 186
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 409 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 468
Query: 306 SLIHAFI 312
++++ +
Sbjct: 469 YMLYSRL 475
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 404 PGAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTI 457
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 458 TGTEECNRMALYMLYSRLE 476
>gi|189237154|ref|XP_973939.2| PREDICTED: similar to igf2 mRNA binding protein, putative
[Tribolium castaneum]
Length = 1116
Score = 44.3 bits (103), Expect = 0.077, Method: Composition-based stats.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + ++V S Q+G ++G+GG V E++R TG+ I++ + +
Sbjct: 418 IFEKMREEGFVAGSDDVRLTVEIMVPSSQVGRIIGKGGQNVRELQRVTGSVIKLPEQGAS 477
Query: 70 PRCGSPHDEIVQVIGNYHSVQDA 92
P+ + V +IG + SVQ A
Sbjct: 478 PQ---EDETTVHIIGPFFSVQSA 497
>gi|83767359|dbj|BAE57498.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391864064|gb|EIT73362.1| polyC-binding proteins alphaCP-1 [Aspergillus oryzae 3.042]
Length = 482
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 213 GGGDPRGFDA--SSGFTPRNRPVES-GNHAAILTSTT------------IEVVIPQLYMA 257
G GD DA + G P +P++S +HA + + I VI A
Sbjct: 64 GQGDTVVPDAPNAKGTNPETQPIQSTASHAETGSQSEQHRPQDESSWIHIRAVISSQEAA 123
Query: 258 HVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
V G+ N+S IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 124 TVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFGLI 174
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 387 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 441
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 442 TITGTQECNQMALYMLYSRL 461
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 395 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 454
Query: 306 SLIHAFI 312
++++ +
Sbjct: 455 YMLYSRL 461
>gi|56566054|gb|AAV98363.1| poly(rC) binding protein 3 [Homo sapiens]
Length = 361
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|194306633|ref|NP_001123613.1| poly(rC)-binding protein 3 isoform 2 [Homo sapiens]
gi|119629728|gb|EAX09323.1| poly(rC) binding protein 3, isoform CRA_a [Homo sapiens]
Length = 345
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 267 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 326
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 327 AQYLINARLTSEVT 340
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 25/147 (17%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR--------CGSPHDEI 79
V RL+V + Q G L+G+GG + E+R +TGA ++V D P G+P D I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPNSTERAVTISGTP-DAI 187
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+Q + V + I + + + P H + P PP + NPA P
Sbjct: 188 IQCVKQICVVMLEAYTIQGQ-----YAIPHPDLTKLHQL--AMQQTPFPPL-GQTNPAFP 239
Query: 140 GSYPSPVGPFHSMDRG---MGPSQPFD 163
G P HS + MG S D
Sbjct: 240 GEKL----PLHSSEEAQNLMGQSSGLD 262
>gi|115399196|ref|XP_001215187.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192070|gb|EAU33770.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 459
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 221 DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV 280
DA + T + RP + + I VI A V G+ N+S IR++SGA V
Sbjct: 84 DAGASQTEQQRPQDESSW------IHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV 137
Query: 281 NDPKPGATEGVVMVSGTSDQMRAAQSLI 308
+D GA E ++ VSG D + A LI
Sbjct: 138 SDYSRGAVERILTVSGPQDAVAKAFGLI 165
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 378 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 432
Query: 81 QVIGNYHSVQDALFHITSRLR 101
+ G Q AL+ + SRL
Sbjct: 433 TITGTQECNQMALYMLYSRLE 453
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 386 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 445
Query: 306 SLIHAFI 312
++++ +
Sbjct: 446 YMLYSRL 452
>gi|402862107|ref|XP_003895411.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Papio anubis]
Length = 103
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 25 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 84
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 85 AQYLINARLTSEVT 98
>gi|340914749|gb|EGS18090.1| putative pab1-binding protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 484
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 406 PGQTITQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTI 459
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 460 TGTEECNRMALYMLYSRLE 478
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N++ IRQ+SGA V+D + GA E ++ VSG D + A
Sbjct: 127 IRAVISSPEAATIIGKGGENVTKIRQMSGARCTVSDYQKGAVERILTVSGIVDAVAKAFG 186
Query: 307 LI 308
LI
Sbjct: 187 LI 188
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+ T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R
Sbjct: 409 TITQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRM 468
Query: 304 AQSLIHAFI 312
A ++++ +
Sbjct: 469 ALYMLYSRL 477
>gi|115495373|ref|NP_001069752.1| poly(rC)-binding protein 3 [Bos taurus]
gi|301767382|ref|XP_002919105.1| PREDICTED: poly(rC)-binding protein 3-like [Ailuropoda melanoleuca]
gi|359323604|ref|XP_848733.3| PREDICTED: poly(rC)-binding protein 3 [Canis lupus familiaris]
gi|109659150|gb|AAI18167.1| Poly(rC) binding protein 3 [Bos taurus]
gi|296490840|tpg|DAA32953.1| TPA: poly(rC) binding protein 3 [Bos taurus]
Length = 361
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|367008424|ref|XP_003678712.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
gi|359746369|emb|CCE89501.1| hypothetical protein TDEL_0A01690 [Torulaspora delbrueckii]
Length = 430
Score = 44.3 bits (103), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 46/307 (14%)
Query: 10 VMRVHSRIAEIGFEPGQAVVA--RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKD 67
V ++ R E G++ G ++++ LL+ +GC++G+ G + E+ + A + P+
Sbjct: 147 VRSINDRHGEEGYD-GNSIMSTINLLISHHLMGCIIGKHGSRLREIEELSAARLSASPQ- 204
Query: 68 QAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPP 127
+ +D I+ + G V DA+ T + +TI K + + P
Sbjct: 205 ---QLIMSNDRILSITG----VADAIHIATFYIGQTIMKCKEAFKSKKAIFYQP-----S 252
Query: 128 PPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDP-MVPPNSDRIPFP 186
P + N AS G Y H P+ + + A + P M+ P P
Sbjct: 253 PVYSVLVNGASHGGYS------HQKHHQYHPNDKYTNSRAGKRVVRPAMMATTPTAQPLP 306
Query: 187 YGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFT-PRNRPVES----GNHAAI 241
+ T + S+TP FT P R ++ AI
Sbjct: 307 QENNGSQVTYTAAAAANATSFTP---------------SFTIPNVRIIDEPAPPAQTMAI 351
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
+ EV I + Y+ ++ G+ +++ I++ +G ++ + DP G+ E + V GTS
Sbjct: 352 IEQ---EVYIDENYVGNIIGKEGKHINSIKEATGCSIYIADPVEGSLERRLTVKGTSMGS 408
Query: 302 RAAQSLI 308
+AA LI
Sbjct: 409 QAAIMLI 415
>gi|346322193|gb|EGX91792.1| KH domain RNA binding protein [Cordyceps militaris CM01]
Length = 464
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V V+GT + R A
Sbjct: 391 TQQIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNSNERLVTVTGTEECNRMAL 450
Query: 306 SLIHAFI 312
L++A +
Sbjct: 451 YLLYARL 457
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG D A
Sbjct: 109 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAAAKAFG 168
Query: 307 LI 308
LI
Sbjct: 169 LI 170
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V V
Sbjct: 386 PGAPMTQQIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNS------NERLVTV 439
Query: 83 IGNYHSVQDALFHITSRL 100
G + AL+ + +RL
Sbjct: 440 TGTEECNRMALYLLYARL 457
>gi|148699884|gb|EDL31831.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699885|gb|EDL31832.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699886|gb|EDL31833.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699889|gb|EDL31836.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|148699890|gb|EDL31837.1| poly(rC) binding protein 3, isoform CRA_b [Mus musculus]
gi|149043678|gb|EDL97129.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043679|gb|EDL97130.1| rCG61051, isoform CRA_b [Rattus norvegicus]
gi|149043680|gb|EDL97131.1| rCG61051, isoform CRA_b [Rattus norvegicus]
Length = 339
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 321 AQYLINARLTSEVT 334
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|328909277|gb|AEB61306.1| heterogeneous nuclear ribonucleoprotein K-like protein, partial
[Equus caballus]
Length = 245
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ A
Sbjct: 187 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNA 245
>gi|9957165|gb|AAG09240.1|AF176329_1 alphaCP-3 [Homo sapiens]
Length = 339
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 321 AQYLINARLTSEVT 334
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|410969851|ref|XP_003991405.1| PREDICTED: poly(rC)-binding protein 3 [Felis catus]
Length = 361
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 283 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 342
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 343 AQYLINARLTSEVT 356
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|320583120|gb|EFW97336.1| RNA binding protein, putative [Ogataea parapolymorpha DL-1]
Length = 404
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
++ +PQ+++ V G+ NL IR I+G V VND PGATE + + TS
Sbjct: 326 DIYVPQMHIGLVIGKGGKNLKDIRTITGCYVKVNDEVPGATERKLTLMSTS 376
>gi|440634730|gb|ELR04649.1| hypothetical protein GMDG_06931 [Geomyces destructans 20631-21]
Length = 473
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 47/82 (57%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 392 GVVPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERL 445
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 446 VTITGTAECNQMALYMLYSRLE 467
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N++ IR++SGA V+D + GA E ++ VSG D A
Sbjct: 121 IRAVISSAEAATVIGKGGENVTLIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKAFG 180
Query: 307 LI 308
LI
Sbjct: 181 LI 182
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 42/67 (62%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 400 TQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTAECNQMAL 459
Query: 306 SLIHAFI 312
++++ +
Sbjct: 460 YMLYSRL 466
>gi|402587695|gb|EJW81630.1| KH domain-containing protein [Wuchereria bancrofti]
Length = 273
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 10/108 (9%)
Query: 215 GDPRGFDASSGFTPRNRPVES----------GNHAAILTSTTIEVVIPQLYMAHVYGENN 264
G R F SSG P P G ++ I T +V IP + G+
Sbjct: 153 GRGRDFGFSSGIIPSRYPGRDDRYGGMRDMMGRYSPIPAMQTTQVTIPDELGGAIIGKGG 212
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312
S ++ +R+ SGA + V + + ++ +SGT +Q++AAQ L+ +
Sbjct: 213 SRINRVREESGAQIEVEPHRDNGGDRIITISGTREQIQAAQYLLQQCV 260
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66
++LVH G ++GRGG + E+R TGA ++VF +
Sbjct: 49 KVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSR 84
>gi|238487586|ref|XP_002375031.1| KH domain RNA binding protein [Aspergillus flavus NRRL3357]
gi|317143475|ref|XP_001819500.2| KH domain RNA binding protein [Aspergillus oryzae RIB40]
gi|220699910|gb|EED56249.1| KH domain RNA binding protein [Aspergillus flavus NRRL3357]
Length = 468
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 15/111 (13%)
Query: 213 GGGDPRGFDA--SSGFTPRNRPVES-GNHAAILTSTT------------IEVVIPQLYMA 257
G GD DA + G P +P++S +HA + + I VI A
Sbjct: 64 GQGDTVVPDAPNAKGTNPETQPIQSTASHAETGSQSEQHRPQDESSWIHIRAVISSQEAA 123
Query: 258 HVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
V G+ N+S IR++SGA V+D GA E ++ VSG D + A LI
Sbjct: 124 TVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFGLI 174
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 387 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 441
Query: 81 QVIGNYHSVQDALFHITSRLR 101
+ G Q AL+ + SRL
Sbjct: 442 TITGTQECNQMALYMLYSRLE 462
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 395 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 454
Query: 306 SLIHAFI 312
++++ +
Sbjct: 455 YMLYSRL 461
>gi|307204631|gb|EFN83253.1| Heterogeneous nuclear ribonucleoprotein K [Harpegnathos saltator]
Length = 207
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V IP+ + G+ + + IR SGA + +++P PG+ + ++ ++G Q++ A
Sbjct: 141 TSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQMA 200
Query: 305 QSLIH 309
Q L+
Sbjct: 201 QYLLQ 205
>gi|242021846|ref|XP_002431354.1| polyrC binding protein, putative [Pediculus humanus corporis]
gi|212516622|gb|EEB18616.1| polyrC binding protein, putative [Pediculus humanus corporis]
Length = 234
Score = 43.9 bits (102), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TGASI+V + P + + V + G
Sbjct: 100 ITLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQV-ASEMLP---NSTERAVTISGTSE 155
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 156 AITQCIYHICCVMLES 171
Score = 38.1 bits (87), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+++GA++ V ++ P +TE V +SGTS+ +
Sbjct: 101 TLRLIVPASQCGSLIGKGGSKIKEIREVTGASIQVASEMLPNSTERAVTISGTSEAI--T 158
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 159 QCIYH--ICC 166
>gi|159162602|pdb|1KHM|A Chain A, C-Terminal Kh Domain Of Hnrnp K (Kh3)
Length = 89
Score = 43.9 bits (102), Expect = 0.089, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 15 TTQVTIPKDLARSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 74
Query: 306 SLIH 309
L+
Sbjct: 75 YLLQ 78
>gi|193248243|dbj|BAC04327.2| unnamed protein product [Homo sapiens]
Length = 319
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 241 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 300
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 301 AQYLINARLTSEVT 314
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|291414465|ref|XP_002723480.1| PREDICTED: poly(rC) binding protein 2-like [Oryctolagus cuniculus]
Length = 319
Score = 43.9 bits (102), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 241 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 300
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 301 AQYLINARLTSEVT 314
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|444519891|gb|ELV12903.1| Poly(rC)-binding protein 3 [Tupaia chinensis]
Length = 300
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 222 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 281
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 282 AQYLINARLTSEVT 295
Score = 38.1 bits (87), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 79 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 114
>gi|58865460|ref|NP_001011945.1| poly(rC)-binding protein 3 [Rattus norvegicus]
gi|50927011|gb|AAH79196.1| Poly(rC) binding protein 3 [Rattus norvegicus]
Length = 319
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 241 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 300
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 301 AQYLINARLTSEVT 314
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|159129031|gb|EDP54145.1| KH domain RNA binding protein [Aspergillus fumigatus A1163]
Length = 464
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 114 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 173
Query: 307 LI 308
LI
Sbjct: 174 LI 175
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 389 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 443
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 444 TITGTQECNQMALYMLYSRL 463
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 123/308 (39%), Gaps = 68/308 (22%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D S + ++G SV
Sbjct: 198 RLLIPHLLIGSIIGKGGSRIREIQEASGA--RLNASDSCLPLSSERSLV--ILGVADSVH 253
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSY--------------LPPFPEMPPPP------- 129
A +++ L E + +R G +Y + P +P P
Sbjct: 254 IATYYVAVTLVEQL--TERFGGPAASAYATRSGGPAGAVPGGMQVVPYVPQPAGGQYGHP 311
Query: 130 --FRPRH---NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
F+ H N A+ G+Y P H +QP H A H P+ P
Sbjct: 312 EHFKRHHPHPNRAAAGAYGVPY--LHGQPAPAPVAQPALHYGAAPHAPYAGAGPHQ---P 366
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
PYG+ +P P +P VGG P +P+
Sbjct: 367 APYGAPQPAQARGAPTPATP-------VGGVMP------------GQPL----------- 396
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 397 -TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMA 455
Query: 305 QSLIHAFI 312
++++ +
Sbjct: 456 LYMLYSRL 463
>gi|121710178|ref|XP_001272705.1| KH domain RNA binding protein [Aspergillus clavatus NRRL 1]
gi|119400855|gb|EAW11279.1| KH domain RNA binding protein [Aspergillus clavatus NRRL 1]
Length = 464
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 114 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 173
Query: 307 LI 308
LI
Sbjct: 174 LI 175
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 389 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 443
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 444 TITGTQECNQMALYMLYSRL 463
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 397 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 456
Query: 306 SLIHAFI 312
++++ +
Sbjct: 457 YMLYSRL 463
>gi|67969673|dbj|BAE01185.1| unnamed protein product [Macaca fascicularis]
Length = 324
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 224 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 283
Query: 304 AQSLIHAFIL 313
AQ LI+ L
Sbjct: 284 AQYLINVSCL 293
>gi|67523265|ref|XP_659693.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
gi|40745765|gb|EAA64921.1| hypothetical protein AN2089.2 [Aspergillus nidulans FGSC A4]
Length = 745
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 384 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 438
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 439 TITGTQECNQMALYMLYSRL 458
>gi|426218395|ref|XP_004003432.1| PREDICTED: poly(rC)-binding protein 3 isoform 1 [Ovis aries]
Length = 345
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 267 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 326
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 327 AQYLINARLTSEVT 340
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 25/147 (17%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR--------CGSPHDEI 79
V RL+V + Q G L+G+GG + E+R +TGA ++V D P G+P D I
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPNSTERAVTISGTP-DAI 187
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+Q + V + I + + + P H + P PP + NPA P
Sbjct: 188 IQCVKQICVVMLEAYTIQGQ-----YAIPHPDLTKLHQL--AMQQTPFPPL-GQTNPAFP 239
Query: 140 GSYPSPVGPFHSMDRG---MGPSQPFD 163
G P HS + MG S D
Sbjct: 240 GEKL----PLHSSEEAQNLMGQSSGLD 262
>gi|70989551|ref|XP_749625.1| KH domain RNA binding protein [Aspergillus fumigatus Af293]
gi|66847256|gb|EAL87587.1| KH domain RNA binding protein [Aspergillus fumigatus Af293]
Length = 464
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 114 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 173
Query: 307 LI 308
LI
Sbjct: 174 LI 175
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 123/308 (39%), Gaps = 68/308 (22%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D S + ++G SV
Sbjct: 198 RLLIPHLLIGSIIGKGGSRIREIQEASGA--RLNASDSCLPLSSERSLV--ILGVADSVH 253
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSY--------------LPPFPEMPPPP------- 129
A +++ L E + +R G +Y + P +P P
Sbjct: 254 IATYYVAVTLVEQL--TERFGGPAASAYATRSGGPAGAVPGGMQVVPYVPQPAGGQYGHP 311
Query: 130 --FRPRH---NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
F+ H N A+ G+Y P H +QP H A H P+ P
Sbjct: 312 EHFKRHHHHPNRAAAGAYGVPY--LHGQPAPAPVAQPALHYGAAPHAPYAGAGPHQ---P 366
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
PYG+ +P P +P VGG P +P+
Sbjct: 367 APYGAPQPAQARGAPTPATP-------VGGVMP------------GQPL----------- 396
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 397 -TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMA 455
Query: 305 QSLIHAFI 312
++++ +
Sbjct: 456 LYMLYSRL 463
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 389 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 443
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 444 TITGTQECNQMALYMLYSRL 463
>gi|119480179|ref|XP_001260118.1| KH domain RNA binding protein [Neosartorya fischeri NRRL 181]
gi|119408272|gb|EAW18221.1| KH domain RNA binding protein [Neosartorya fischeri NRRL 181]
Length = 464
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 114 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 173
Query: 307 LI 308
LI
Sbjct: 174 LI 175
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 389 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 443
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 444 TITGTQECNQMALYMLYSRL 463
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 68/308 (22%), Positives = 123/308 (39%), Gaps = 68/308 (22%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D S + ++G SV
Sbjct: 198 RLLIPHLLIGSIIGKGGSRIREIQEASGA--RLNASDSCLPLSSERSLV--ILGVADSVH 253
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSY--------------LPPFPEMPPPP------- 129
A +++ L E + +R G +Y + P +P P
Sbjct: 254 IATYYVAVTLVEQL--TERFGGPAASAYATRSGGPAGAVPGGMQVVPYVPQPAGGQYGHP 311
Query: 130 --FRPRH---NPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184
F+ H N A+ G+Y P H +QP H A H P+ P
Sbjct: 312 EHFKRHHPHPNRAAAGAYGVPY--LHGQPAPAPVAQPALHYGAAPHAPYAGAGPHQ---P 366
Query: 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
PYG+ +P P +P VGG P +P+
Sbjct: 367 APYGAPQPAQARGAPTPATP-------VGGVMP------------GQPL----------- 396
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 397 -TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMA 455
Query: 305 QSLIHAFI 312
++++ +
Sbjct: 456 LYMLYSRL 463
>gi|395536911|ref|XP_003770452.1| PREDICTED: poly(rC)-binding protein 3 isoform 3 [Sarcophilus
harrisii]
Length = 318
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 240 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 299
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 300 AQYLINARLTSEVT 313
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
>gi|427795265|gb|JAA63084.1| Putative polyc-binding alphacp-1, partial [Rhipicephalus
pulchellus]
Length = 228
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E+ IP + + G+ S ++ IRQ+SGA + +++ + G+ + V +SGT + + AQ L
Sbjct: 54 EMTIPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYL 113
Query: 308 IH 309
I+
Sbjct: 114 IN 115
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
IGC++G+GG ++E+R+ +GA+I++ ++ + D V + G ++ A + I +
Sbjct: 62 IGCIIGKGGSKINEIRQLSGATIKISNSEEGSK-----DRTVTISGTPEAINLAQYLINT 116
Query: 99 RLR 101
+
Sbjct: 117 SME 119
>gi|47220208|emb|CAF98973.1| unnamed protein product [Tetraodon nigroviridis]
Length = 345
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 268 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISL 327
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 328 AQYLINARLTSEVT 341
>gi|413955215|gb|AFW87864.1| hypothetical protein ZEAMMB73_706163 [Zea mays]
Length = 204
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 236 GNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
G H A +LT T + IP Y + G +N+++IR SGA V + + + V
Sbjct: 63 GIHGAGPLLTQITQTMQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVE 122
Query: 294 VSGTSDQMRAAQSLIH 309
+ GTS Q++AAQ LI
Sbjct: 123 IKGTSSQVQAAQQLIQ 138
>gi|259487459|tpe|CBF86155.1| TPA: KH domain RNA binding protein (AFU_orthologue; AFUA_2G04940)
[Aspergillus nidulans FGSC A4]
Length = 465
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 5/81 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + + ++ +V
Sbjct: 384 GAMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----NSNERLV 438
Query: 81 QVIGNYHSVQDALFHITSRLR 101
+ G Q AL+ + SRL
Sbjct: 439 TITGTQECNQMALYMLYSRLE 459
>gi|429859891|gb|ELA34647.1| kh domain rna binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 471
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S+IR++SGA V+D + GA E ++ VSG D A
Sbjct: 116 IRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKAFG 175
Query: 307 LI 308
LI
Sbjct: 176 LI 177
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 398 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 457
Query: 306 SLIHAFI 312
++++ +
Sbjct: 458 YMLYSRL 464
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +
Sbjct: 390 GAMPGAPLTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERL 443
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G + AL+ + SRL
Sbjct: 444 VTITGTEECNRMALYMLYSRLE 465
>gi|440469758|gb|ELQ38855.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae Y34]
gi|440482264|gb|ELQ62771.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae P131]
Length = 490
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R
Sbjct: 408 SLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTEECNRM 467
Query: 304 AQSLIHAFI 312
A ++++ +
Sbjct: 468 ALYMLYSRL 476
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S IRQ+S A V+D + GA E ++ VSG D + A
Sbjct: 128 IRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVI 83
G ++ ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 406 GASLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNS------NERLVTIT 459
Query: 84 GNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
G + AL+ + SRL GPN+G
Sbjct: 460 GTEECNRMALYMLYSRL----------GPNDG 481
>gi|308499839|ref|XP_003112105.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
gi|308268586|gb|EFP12539.1| hypothetical protein CRE_29640 [Caenorhabditis remanei]
Length = 721
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 74/299 (24%), Positives = 115/299 (38%), Gaps = 62/299 (20%)
Query: 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSV 89
R+L+H G L+GR G + E+R A +++F AP GS D ++ G +V
Sbjct: 449 VRMLIHQSHAGALIGRNGTKIKELREKCSARLKIFT-GCAP--GST-DRVLITSGEQKNV 504
Query: 90 QDALFHITSRLRETIFPMKRPGPNNGHS--YLPPFPEMPPPPFRPRHNPASPGSYP---S 144
+ + L+E P G S YLP F P N + G +P S
Sbjct: 505 LAIIEEVMKELKEI--------PIKGSSTPYLPSFHYDPS-------NISEYGGFPGNLS 549
Query: 145 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSP 204
GP +S GP+ P Q P G +R G P
Sbjct: 550 SGGPQNS----RGPAPPRGGQG-------------------PAGGQRSYGGGAITPGGGP 586
Query: 205 RSWTP---QGVGGGDPRGFDASS-GFTPRNRPVESGNHA----------AILTSTTIEVV 250
RS+ Q GG G+ ++ G+ P+ + +A + T+ V
Sbjct: 587 RSFESGDFQQFRGGPMPGYAMNAPGYAPQQGQFGAPANAGYGYGPGGGGPVTTAQVSFVT 646
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
IP + G ++ IRQ SGA + + +P G E ++ + GT Q+ +AQ L+
Sbjct: 647 IPSDLGGTIIGRGGERIARIRQESGAQITL-EPSTGQPERIITIKGTEPQIHSAQYLLQ 704
>gi|33150676|gb|AAP97216.1|AF092441_1 CBP [Homo sapiens]
Length = 397
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLP-PF-PEMPPPPFRPRHNPA 137
V + G+ S+ A + IT+ L ET P++ + LP PF P + P P A
Sbjct: 289 VTITGSPVSIALAQYLITACL-ETAKSTSGGTPSSAPADLPAPFSPPLTALPQLPLACWA 347
Query: 138 SPGSYPSP 145
P PSP
Sbjct: 348 HPMPSPSP 355
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGQAGTKIKEIRETTGAQVQVAGDLFPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|345497208|ref|XP_001599286.2| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Nasonia vitripennis]
Length = 643
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I++ +
Sbjct: 474 IFEKMREEGFVSGTEDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSVIKLSEQQAT 533
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
P + + V +IG + SVQ A I
Sbjct: 534 PPT-ADEETTVHIIGPFFSVQSAQRRI 559
>gi|432931639|ref|XP_004081713.1| PREDICTED: poly(rC)-binding protein 3-like isoform 2 [Oryzias
latipes]
Length = 343
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 265 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISL 324
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 325 AQYLINARLTSEVT 338
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + EMR +TGA ++V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
>gi|380478963|emb|CCF43298.1| KH domain-containing protein [Colletotrichum higginsianum]
Length = 469
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S+IR++SGA V+D + GA E ++ VSG D A
Sbjct: 113 IRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKAFG 172
Query: 307 LI 308
LI
Sbjct: 173 LI 174
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 396 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 455
Query: 306 SLIHAFI 312
++++ +
Sbjct: 456 YMLYSRL 462
>gi|336465527|gb|EGO53767.1| hypothetical protein NEUTE1DRAFT_119308 [Neurospora tetrasperma
FGSC 2508]
gi|350295174|gb|EGZ76151.1| eukaryotic type KH-domain (KH-domain type I) [Neurospora
tetrasperma FGSC 2509]
Length = 481
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+ T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R
Sbjct: 406 ALTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRM 465
Query: 304 AQSLIH 309
A L++
Sbjct: 466 ALYLLY 471
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A + G+ N+S IR++S A V+D + GA E ++ VSG D + A
Sbjct: 127 VRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 186
Query: 307 LI 308
LI
Sbjct: 187 LI 188
>gi|380800003|gb|AFE71877.1| poly(rC)-binding protein 2 isoform g, partial [Macaca mulatta]
Length = 151
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 73 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 132
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 133 AQYLIN 138
>gi|356538917|ref|XP_003537947.1| PREDICTED: uncharacterized protein LOC100786134 [Glycine max]
Length = 794
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 21 GFEPGQAVVA----RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPH 76
G P QA V ++ V ++++G ++GR G + ++ +GA I++ P+ P
Sbjct: 282 GLSPAQATVGSEQIQIQVPNEKVGLIIGRSGETIKSLQTKSGARIQLIPQ-HLPEGDDSK 340
Query: 77 DEIVQVIGNYHSVQDALFHITSRLRETIFP 106
+ VQV G+ +Q A I + + + P
Sbjct: 341 ERTVQVTGDKRQIQIAQELIKEVMNQPVRP 370
>gi|389641821|ref|XP_003718543.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
gi|351641096|gb|EHA48959.1| Poly(rC)-binding protein 3 [Magnaporthe oryzae 70-15]
Length = 483
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R
Sbjct: 408 SLTQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTEECNRM 467
Query: 304 AQSLIHAFI 312
A ++++ +
Sbjct: 468 ALYMLYSRL 476
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S IRQ+S A V+D + GA E ++ VSG D + A
Sbjct: 128 IRAVISSPEAATIIGKGGENVSKIRQMSSAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 187
Query: 307 LI 308
LI
Sbjct: 188 LI 189
>gi|50557074|ref|XP_505945.1| YALI0F27401p [Yarrowia lipolytica]
gi|49651815|emb|CAG78757.1| YALI0F27401p [Yarrowia lipolytica CLIB122]
Length = 565
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 61/126 (48%), Gaps = 19/126 (15%)
Query: 192 PGHGPTFDRPPSPRSWTPQGVGGGDPRGFDAS----SGFTPRNRPVESGNHAAILTSTTI 247
P GP +PP+ P+G GG P DA F+PR SG TT
Sbjct: 444 PRDGPRDFKPPTG----PRGRGGDRPVRQDARGPEIREFSPRE---ASGQ-------TTQ 489
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAAQS 306
++ + + + + G+ S++S IR+ SG N+ V++ P E V ++GT+D ++ A
Sbjct: 490 QINVRKDMIGAIIGKGGSSISEIRKKSGTNIRVIDSEDPSQLERSVSITGTADGVKIAVR 549
Query: 307 LIHAFI 312
LIH I
Sbjct: 550 LIHQKI 555
>gi|321475563|gb|EFX86525.1| hypothetical protein DAPPUDRAFT_307836 [Daphnia pulex]
Length = 364
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ + S + + + G SV
Sbjct: 272 EMAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRE---SSSERTITITGTAESVA 328
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEM 125
A + I +RL M G+ +L P P M
Sbjct: 329 LAQYLINTRLAMETAAMGM----MGYPFLAPSPIM 359
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ S + IR+I+GA+VVV ++ P +TE V VSGTSD +
Sbjct: 102 TLRLIMPASQCGSLIGKGGSKIKEIREITGASVVVASEMLPNSTERAVTVSGTSDAI--T 159
Query: 305 QSLIHAFILC 314
Q + H I C
Sbjct: 160 QCIYH--ICC 167
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL++ + Q G L+G+GG + E+R TGAS+ V + P + + V V G
Sbjct: 101 ITLRLIMPASQCGSLIGKGGSKIKEIREITGASV-VVASEMLP---NSTERAVTVSGTSD 156
Query: 88 SVQDALFHITSRLRET 103
++ ++HI + E+
Sbjct: 157 AITQCIYHICCVMLES 172
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
P + RLL+ +++G ++G+ G IV R +GA I + GS + IV +
Sbjct: 14 PSVTLTIRLLMAGKEVGSIIGKKGEIVKRFREESGARINISD-------GSCPERIVTIT 66
Query: 84 GNYHSVQDALFHITSRLRETI 104
G ++ A I +L E +
Sbjct: 67 GTTDAIFKAFNLICKKLEEEV 87
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN--DPKPGATEGVVMVSGTSDQMRAAQ 305
E+ +P + + G+ + ++ IRQISGA + ++ + + ++E + ++GT++ + AQ
Sbjct: 272 EMAVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEDRESSSERTITITGTAESVALAQ 331
Query: 306 SLIH 309
LI+
Sbjct: 332 YLIN 335
>gi|383858850|ref|XP_003704912.1| PREDICTED: insulin-like growth factor 2 mRNA-binding protein 1-like
[Megachile rotundata]
Length = 624
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ + Q+
Sbjct: 473 IFEKMREEGFVAGTDDVRLTIEILVPSAQVGRIIGKGGQNVRELQRVTGSIIK-LSEQQS 531
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+ + V +IG + SVQ A I S
Sbjct: 532 TSPSADEEATVHIIGPFFSVQSAQRRIRS 560
>gi|384490263|gb|EIE81485.1| hypothetical protein RO3G_06190 [Rhizopus delemar RA 99-880]
Length = 426
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
++ + ++ +GC++G+GG ++E+R+ +G+ I++ A H+ ++ + G S Q
Sbjct: 352 QIYIPNEMVGCIIGKGGMKINEIRQTSGSHIKI-----ADPSTDSHERLITITGTPESNQ 406
Query: 91 DALFHITSRLR 101
AL+ + SRL
Sbjct: 407 MALYLLYSRLE 417
>gi|85111179|ref|XP_963814.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|28925551|gb|EAA34578.1| hypothetical protein NCU09237 [Neurospora crassa OR74A]
gi|38566984|emb|CAE76284.1| related to hnRNP protein E2 [Neurospora crassa]
Length = 489
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+ T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R
Sbjct: 406 ALTQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRM 465
Query: 304 AQSLIH 309
A L++
Sbjct: 466 ALYLLY 471
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A + G+ N+S IR++S A V+D + GA E ++ VSG D + A
Sbjct: 127 VRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 186
Query: 307 LI 308
LI
Sbjct: 187 LI 188
>gi|15082311|gb|AAH12061.1| PCBP3 protein [Homo sapiens]
Length = 313
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 235 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 294
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 295 AQYLINARLTSEVT 308
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 61/147 (41%), Gaps = 25/147 (17%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR--------CGSPHDEI 79
V RL+V + Q G L+G+GG + E+R +TGA ++V D P G+P D I
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPNSTERAVTISGTP-DAI 155
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
+Q + V + I + + + P H + P PP + NPA P
Sbjct: 156 IQCVKQICVVMLEAYTIQGQ-----YAIPHPDLTKLHQL--AMQQTPFPPL-GQTNPAFP 207
Query: 140 GSYPSPVGPFHSMDRG---MGPSQPFD 163
G P HS + MG S D
Sbjct: 208 GEKL----PLHSSEEAQNLMGQSSGLD 230
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 84
>gi|324519086|gb|ADY47282.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 342
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R ATGASI+V + P S + V + G+
Sbjct: 104 ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQV-ASEMLP---SSTERAVTISGSAD 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP 132
++ + HI L E P G + P P P F P
Sbjct: 160 AIVLCMQHICHILLE--------APPKGTT----LPYRPKPTFNP 192
>gi|302414660|ref|XP_003005162.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
gi|261356231|gb|EEY18659.1| Poly(rC)-binding protein [Verticillium albo-atrum VaMs.102]
Length = 478
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S+IR++SGA V+D + GA E ++ VSG D A
Sbjct: 117 IRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDASAKAFG 176
Query: 307 LI 308
LI
Sbjct: 177 LI 178
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQVIG 84
Q + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V + G
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTITG 454
Query: 85 NYHSVQDALFHITSRLRETI 104
+ + AL+ + SRL T+
Sbjct: 455 TDETNRMALYMLYSRLDRTV 474
>gi|346979418|gb|EGY22870.1| Poly(rC)-binding protein [Verticillium dahliae VdLs.17]
Length = 477
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S+IR++SGA V+D + GA E ++ VSG D A
Sbjct: 117 IRAVISSPEAATVIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDASAKAFG 176
Query: 307 LI 308
LI
Sbjct: 177 LI 178
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQVIG 84
Q + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V + G
Sbjct: 401 QPLTQQIFIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNS------NERLVTITG 454
Query: 85 NYHSVQDALFHITSRLR 101
+ + AL+ + SRL
Sbjct: 455 TDETNRMALYMLYSRLE 471
>gi|134079139|emb|CAK45951.1| unnamed protein product [Aspergillus niger]
Length = 421
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
>gi|324516472|gb|ADY46541.1| Poly(rC)-binding protein 3 [Ascaris suum]
Length = 360
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R ATGASI+V + P S + V + G+
Sbjct: 104 ITMRLIVPATQCGSLIGKGGSKIKEIREATGASIQV-ASEMLP---SSTERAVTISGSAD 159
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP 132
++ + HI L E P G + P P P F P
Sbjct: 160 AIVLCMQHICHILLE--------APPKGTT----LPYRPKPTFNP 192
>gi|225681071|gb|EEH19355.1| Poly(rC)-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 495
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 139 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 198
Query: 307 LI 308
LI
Sbjct: 199 LI 200
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PG V ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +
Sbjct: 414 GVVPGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERL 467
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 468 VTITGTPECNQMALYMLYSRLE 489
Score = 37.4 bits (85), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 422 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTPECNQMAL 481
Query: 306 SLIHAFI 312
++++ +
Sbjct: 482 YMLYSRL 488
>gi|212529012|ref|XP_002144663.1| KH domain RNA binding protein [Talaromyces marneffei ATCC 18224]
gi|210074061|gb|EEA28148.1| KH domain RNA binding protein [Talaromyces marneffei ATCC 18224]
Length = 461
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 126/301 (41%), Gaps = 55/301 (18%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D + +V +G +V
Sbjct: 190 RLLIPHILIGSIIGKGGVRIREIQEASGA--RLNASDACLPLSTERSLVV--LGVADAVH 245
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP--------PFPEMPPPPFRPRHNPASPGSY 142
A +++ L E + +R G +Y M P+ P+ PA G Y
Sbjct: 246 IATYYVAVTLVEQL--TERFGGPAASAYATRSGGPAGVVPGGMQVVPYVPQ--PAG-GQY 300
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
P +A H P N+ P PYG+ P GP
Sbjct: 301 GHP-------------------DSARRH-----YPQNNRPGPGPYGAPYPHGGPAAQ--- 333
Query: 203 SPRSWTPQGVGGGDPRGFDASSG-------FTPRNRPVESGNH--AAILTS--TTIEVVI 251
+P + P GGG R A +G P +P + A +++S T ++ I
Sbjct: 334 APVTQPPLHYGGGAARAPYAGAGPHQPAPYGAPHAQPHGASTQPLAGVVSSQPITQQIYI 393
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
P + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A +++A
Sbjct: 394 PNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYMLYAR 453
Query: 312 I 312
+
Sbjct: 454 L 454
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 106 IRAVISSQEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAVAKAFG 165
Query: 307 LI 308
LI
Sbjct: 166 LI 167
>gi|386771590|ref|NP_001246875.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
gi|383292065|gb|AFH04546.1| mushroom-body expressed, isoform K [Drosophila melanogaster]
Length = 573
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 108/295 (36%), Gaps = 51/295 (17%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK------DQAPRCGSPHDEIVQVIG 84
RL+V + Q G L+G+ G + E+R+ TG SI+V + ++A ++I Q I
Sbjct: 110 RLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASEMLPNSTERAVTLSGSAEQITQCI- 168
Query: 85 NYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPS 144
Q L + S R P RP P P F + N A P
Sbjct: 169 ----YQICLVMLESPPRGATIPY-RPKP----QVTGPVILANGQAFTIQGNYAVPTQETC 219
Query: 145 PVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP-- 202
PV P G+ A S DP++ + P P + P
Sbjct: 220 PVFPLALATGGL--------HAGISGLADPLLKGAHLQGAIPAHHHHLQQMPDVAKNPLA 271
Query: 203 -----SPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMA 257
P GG + P NR + + E+ + +
Sbjct: 272 SLAALGLAGMNPASTGGINHTA-------NPANRAQQQQH----------EMTVSNDLIG 314
Query: 258 HVYGENNSNLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAAQSLIH 309
+ G+ + ++ IRQISGA + +++ + G T+ + +SG D + AQ LI+
Sbjct: 315 CIIGKGGTKIAEIRQISGAMIRISNCEEREGGNTDRTITISGNPDSVALAQYLIN 369
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+P + RL++ +++G ++G+ G IV+ R +GA I + GS + IV V
Sbjct: 19 DPSVTLTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINISD-------GSCPERIVTV 71
Query: 83 IGNYHSVQDALFHITSRLRE 102
G +++ A IT + E
Sbjct: 72 SGTTNAIFSAFTLITKKFEE 91
>gi|336265613|ref|XP_003347577.1| hypothetical protein SMAC_04885 [Sordaria macrospora k-hell]
gi|380096444|emb|CCC06492.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 469
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 388 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 447
Query: 306 SLIH 309
L++
Sbjct: 448 YLLY 451
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A + G+ N+S IR++S A V+D + GA E ++ VSG D + A
Sbjct: 127 VRSVISSPEAATIIGKGGENVSKIREMSNAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 186
Query: 307 LI 308
LI
Sbjct: 187 LI 188
>gi|295673384|ref|XP_002797238.1| Poly(rC)-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282610|gb|EEH38176.1| Poly(rC)-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 495
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 139 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 198
Query: 307 LI 308
LI
Sbjct: 199 LI 200
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PG V ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +
Sbjct: 414 GVVPGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERL 467
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 468 VTITGTPECNQMALYMLYSRLE 489
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 422 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTPECNQMAL 481
Query: 306 SLIHAFI 312
++++ +
Sbjct: 482 YMLYSRL 488
>gi|326922311|ref|XP_003207393.1| PREDICTED: poly(rC)-binding protein 3-like [Meleagris gallopavo]
Length = 313
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 235 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 294
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 295 AQYLINARLTSEVT 308
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 58/147 (39%), Gaps = 25/147 (17%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF------PKDQAPRCGSPHDEIVQ 81
V RL+V + Q G L+G+GG + E+R +TGA ++V ++A D I+Q
Sbjct: 98 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQ 157
Query: 82 VIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRP--RHNPASP 139
+ V + I + + + P H M PF P + PA P
Sbjct: 158 CVKQICVVMLEAYTIQGQ-----YAIPHPDLTKLHQL-----AMQQTPFTPLGQTTPAFP 207
Query: 140 GSYPSPVGPFHSMDRG---MGPSQPFD 163
G P HS + MG S D
Sbjct: 208 GEKL----PLHSSEEAQNLMGQSSGLD 230
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 13 VHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC 72
+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 1 MESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------- 51
Query: 73 GSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
G+ + IV + G ++ A I + E I
Sbjct: 52 GNCPERIVTITGPTDAIFKAFAMIAYKFEEDI 83
>gi|226292229|gb|EEH47649.1| Poly(rC)-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 495
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 139 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 198
Query: 307 LI 308
LI
Sbjct: 199 LI 200
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PG V ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +
Sbjct: 414 GVVPGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERL 467
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 468 VTITGTPECNQMALYMLYSRLE 489
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 422 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTPECNQMAL 481
Query: 306 SLIHAFI 312
++++ +
Sbjct: 482 YMLYSRL 488
>gi|193785510|dbj|BAG50876.1| unnamed protein product [Homo sapiens]
Length = 243
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 74 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 128
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 129 VTITGSPVSIALAQYLITACLE 150
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 85 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 144
Query: 308 IHAFI 312
I A +
Sbjct: 145 ITACL 149
>gi|296418898|ref|XP_002839062.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635056|emb|CAZ83253.1| unnamed protein product [Tuber melanosporum]
Length = 354
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 276 PGQPLTQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERLVTI 329
Query: 83 IGNYHSVQDALFHITSRLR 101
G Q AL+ + SRL
Sbjct: 330 TGTQECNQMALYMLYSRLE 348
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/67 (23%), Positives = 41/67 (61%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 281 TQQIFIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 340
Query: 306 SLIHAFI 312
++++ +
Sbjct: 341 YMLYSRL 347
>gi|349802451|gb|AEQ16698.1| putative poly(rC)-binding protein 2 isoform g [Pipa carvalhoi]
Length = 207
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 129 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSTASISL 188
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 189 AQYLIN 194
>gi|310790849|gb|EFQ26382.1| KH domain-containing protein [Glomerella graminicola M1.001]
Length = 471
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++SGA V+D + GA E ++ VSG D A
Sbjct: 114 IRAVISSPEAATIIGKGGENVSNIRKMSGAKCTVSDYQKGAVERILTVSGVVDAAAKAFG 173
Query: 307 LI 308
LI
Sbjct: 174 LI 175
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQISG+ + +N+P+ + E +V ++GT + R A
Sbjct: 398 TQQIYIPNDMVGAIIGKGGQKINEIRQISGSVIKINEPQDNSNERLVTITGTEECNRMAL 457
Query: 306 SLIHAFI 312
++++ +
Sbjct: 458 YMLYSRL 464
>gi|261195190|ref|XP_002623999.1| KH domain RNA binding protein [Ajellomyces dermatitidis SLH14081]
gi|239587871|gb|EEQ70514.1| KH domain RNA binding protein [Ajellomyces dermatitidis SLH14081]
gi|239610640|gb|EEQ87627.1| KH domain RNA binding protein [Ajellomyces dermatitidis ER-3]
gi|327348926|gb|EGE77783.1| KH domain RNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 496
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 140 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGMQDAVAKAFG 199
Query: 307 LI 308
LI
Sbjct: 200 LI 201
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEI 79
G PG V ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +
Sbjct: 415 GVVPGAPVTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERL 468
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G Q AL+ + SRL
Sbjct: 469 VTITGTPECNQMALYMLYSRLE 490
>gi|317032830|ref|XP_001394456.2| KH domain RNA binding protein [Aspergillus niger CBS 513.88]
Length = 444
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
>gi|196012987|ref|XP_002116355.1| hypothetical protein TRIADDRAFT_30852 [Trichoplax adhaerens]
gi|190580946|gb|EDV21025.1| hypothetical protein TRIADDRAFT_30852 [Trichoplax adhaerens]
Length = 97
Score = 43.1 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 36/64 (56%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T++V IP+ + G+ + + +R+ SGA + ++D +PG V+ +SG DQ+ A
Sbjct: 23 TVQVSIPKDLAGSIIGKGGTRIRDVRERSGAMIKIDDARPGEDYRVITISGGKDQIDEAH 82
Query: 306 SLIH 309
L+
Sbjct: 83 GLLQ 86
>gi|12239354|gb|AAG49443.1|AF141340_1 LYST-interacting protein LIP4 [Homo sapiens]
Length = 276
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+++ E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ +
Sbjct: 84 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL 143
Query: 304 AQSLIHAFI 312
AQ LI A +
Sbjct: 144 AQYLITACL 152
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 77 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 131
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 132 VTITGSPVSIALAQYLITACLE 153
>gi|324533465|gb|ADY49308.1| Heterogeneous nuclear ribonucleoprotein K, partial [Ascaris suum]
Length = 182
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 4/76 (5%)
Query: 238 HAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT 297
H AI++ T V IP + G+ ++ IR+ SGA++VV +P+ +E ++ +SG+
Sbjct: 86 HDAIISHT---VTIPNELGGTIIGKGGERINRIREESGAHIVV-EPQQPNSERIITISGS 141
Query: 298 SDQMRAAQSLIHAFIL 313
Q++ AQ L+ +I+
Sbjct: 142 HAQIQTAQYLLQQWIV 157
>gi|402862114|ref|XP_003895414.1| PREDICTED: poly(rC)-binding protein 3-like, partial [Papio anubis]
Length = 327
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 9/105 (8%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+ H P R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 21 LSHHPQPQFGRRMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 78
Query: 61 IRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
I + G+ + IV + G ++ A I + E I
Sbjct: 79 INISE-------GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D +
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 190
Query: 305 QSLIHAFIL 313
I +L
Sbjct: 191 VKQICVVML 199
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
>gi|332025247|gb|EGI65421.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Acromyrmex
echinatior]
Length = 568
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E G+ G + +LV S Q+G ++G+GG V E++R TG+ I+ + QA
Sbjct: 407 IFEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIK-LSEQQA 465
Query: 70 PRCGSPHDEIVQVIGNYHSVQDA 92
+ + V +IG + SVQ A
Sbjct: 466 TPPSAEEETTVHIIGPFFSVQSA 488
>gi|158293805|ref|XP_315123.4| AGAP005015-PA [Anopheles gambiae str. PEST]
gi|157016622|gb|EAA10478.5| AGAP005015-PA [Anopheles gambiae str. PEST]
Length = 447
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 11/101 (10%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R+L+H GC++GRGG + E++ G +++F + P+ D I QVIG+
Sbjct: 132 RILIHLSLAGCVIGRGGSKIKEIKDEIGCRLKIFS-NIPPQ---STDRIAQVIGSEEQCL 187
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP-PFPEMPPPPF 130
L I ++ T P+K P H+Y P + +M +
Sbjct: 188 KTLNEIIKLIKGT--PIKGP----VHNYDPHNYDDMYADEY 222
>gi|350631260|gb|EHA19631.1| hypothetical protein ASPNIDRAFT_52961 [Aspergillus niger ATCC 1015]
Length = 462
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 387 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 441
Query: 81 QVIGNYHSVQDALFHITSRL 100
+ G Q AL+ + SRL
Sbjct: 442 TITGTQECNQMALYMLYSRL 461
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 395 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 454
Query: 306 SLIHAFI 312
++++ +
Sbjct: 455 YMLYSRL 461
>gi|307185706|gb|EFN71622.1| Heterogeneous nuclear ribonucleoprotein K [Camponotus floridanus]
Length = 139
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 38/66 (57%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
T+ +V IP+ + G+ + + IR SGA + +++P PG+ + ++ ++G Q++
Sbjct: 72 KTSTQVTIPKDLAGAIIGKGGARIRKIRSDSGAGITIDEPLPGSNDRIITITGIPSQIQM 131
Query: 304 AQSLIH 309
AQ L+
Sbjct: 132 AQYLLQ 137
>gi|335299140|ref|XP_003358506.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Sus scrofa]
Length = 360
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 202 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 261
Query: 308 IHAFI 312
I A +
Sbjct: 262 ITACL 266
>gi|358367184|dbj|GAA83803.1| KH domain RNA binding protein [Aspergillus kawachii IFO 4308]
Length = 468
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 110 IRAVISSQEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 169
Query: 307 LI 308
LI
Sbjct: 170 LI 171
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ P+ S ++ +V
Sbjct: 387 GVMPGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI----NEPQENS-NERLV 441
Query: 81 QVIGNYHSVQDALFHITSRLR 101
+ G Q AL+ + SRL
Sbjct: 442 TITGTQECNQMALYMLYSRLE 462
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 395 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMAL 454
Query: 306 SLIHAFI 312
++++ +
Sbjct: 455 YMLYSRL 461
>gi|322792902|gb|EFZ16735.1| hypothetical protein SINV_14612 [Solenopsis invicta]
Length = 555
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E G+ G + +LV S Q+G ++G+GG V E++R TG+ I+ + QA
Sbjct: 398 IFEKMREEGYVAGTEDVRLTIEILVPSTQVGRIIGKGGQNVRELQRVTGSVIK-LSEQQA 456
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + V +IG + SVQ A I
Sbjct: 457 TPPSAEEETTVHIIGPFFSVQSAQRRI 483
>gi|400603119|gb|EJP70717.1| KH domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 464
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V V+GT + R A
Sbjct: 391 TQQIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNSNERLVTVTGTEECNRMAL 450
Query: 306 SLIHAFI 312
L+++ +
Sbjct: 451 YLLYSRL 457
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 109 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 168
Query: 307 LI 308
LI
Sbjct: 169 LI 170
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V V
Sbjct: 386 PGGPMTQQIYIPNDMVGAIIGKGGQKINEIRQLSGSVIKINEPQDNS------NERLVTV 439
Query: 83 IGNYHSVQDALFHITSRL 100
G + AL+ + SRL
Sbjct: 440 TGTEECNRMALYLLYSRL 457
>gi|320591828|gb|EFX04267.1| kh domain containing RNA-binding protein [Grosmannia clavigera
kw1407]
Length = 476
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S IRQ+S A V+D + GA E ++ VSG D + A
Sbjct: 119 IRAVISSPEAATIIGKGGENVSKIRQMSNAKCTVSDYQKGAVERILTVSGVVDAVAKAFG 178
Query: 307 LI 308
LI
Sbjct: 179 LI 180
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R A
Sbjct: 403 TQQIYIPNDMVGAIIGKGGQKINEIRQVSGSVIKINEPQDNSNERLVTITGTEECNRMAL 462
Query: 306 SLIHAFI 312
++++ +
Sbjct: 463 YMLYSRL 469
>gi|74218201|dbj|BAE43196.1| unnamed protein product [Mus musculus]
Length = 99
Score = 42.7 bits (99), Expect = 0.20, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 21 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 80
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 81 AQYLIN 86
>gi|301767224|ref|XP_002919001.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Ailuropoda
melanoleuca]
Length = 360
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 202 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 261
Query: 308 IHAFI 312
I A +
Sbjct: 262 ITACL 266
>gi|410951301|ref|XP_003982336.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Felis catus]
Length = 360
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 202 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 261
Query: 308 IHAFI 312
I A +
Sbjct: 262 ITACL 266
>gi|338714774|ref|XP_003363150.1| PREDICTED: poly(rC)-binding protein 4-like isoform 2 [Equus
caballus]
Length = 360
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 191 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 245
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 246 VTITGSPVSIALAQYLITACLE 267
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 202 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 261
Query: 308 IHAFI 312
I A +
Sbjct: 262 ITACL 266
>gi|32451938|gb|AAH54653.1| Heterogeneous nuclear ribonucleoprotein K [Danio rerio]
gi|182890942|gb|AAI65841.1| Hnrnpk protein [Danio rerio]
Length = 420
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ A
Sbjct: 343 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLQGSEDRIITITGTQDQIQNA 401
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 22 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQ 81
+ G + ++ + G ++G+GG + ++R +GASI++ P GS D I+
Sbjct: 336 YSDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLQGS-EDRIIT 390
Query: 82 VIGNYHSVQDALFH 95
+ G +Q+AL+
Sbjct: 391 ITGTQDQIQNALYQ 404
>gi|255932595|ref|XP_002557854.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582473|emb|CAP80658.1| Pc12g10310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 473
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI 83
PGQ + ++ + + +G ++G+GG ++E+R +G+ I++ + S ++ +V +
Sbjct: 389 PGQPLTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQE-----SSNERLVTIT 443
Query: 84 GNYHSVQDALFHITSRL 100
G Q AL+ + SRL
Sbjct: 444 GTAECNQMALYMLYSRL 460
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S IR++SGA V+D GA E ++ VSG D A
Sbjct: 109 IRAVISSPEAATVIGKGGENVSQIRRLSGAKCTVSDYSRGAVERILTVSGPQDAAAKAFG 168
Query: 307 LI 308
LI
Sbjct: 169 LI 170
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 41/67 (61%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT++ + A
Sbjct: 394 TQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQESSNERLVTITGTAECNQMAL 453
Query: 306 SLIHAFI 312
++++ +
Sbjct: 454 YMLYSRL 460
>gi|358400710|gb|EHK50036.1| hypothetical protein TRIATDRAFT_51252 [Trichoderma atroviride IMI
206040]
Length = 477
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 47/81 (58%), Gaps = 7/81 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 396 PGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNS------NERLVTI 449
Query: 83 IGNYHSVQDALFHITSRLRET 103
G + AL+ + SRL ET
Sbjct: 450 TGTEECNRMALYMLYSRLGET 470
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R A
Sbjct: 401 TQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTEECNRMAL 460
Query: 306 SLIHAFI 312
++++ +
Sbjct: 461 YMLYSRL 467
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 120 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 179
Query: 307 LI 308
LI
Sbjct: 180 LI 181
>gi|449447567|ref|XP_004141539.1| PREDICTED: uncharacterized protein LOC101203078 [Cucumis sativus]
gi|449481514|ref|XP_004156205.1| PREDICTED: uncharacterized LOC101203078 [Cucumis sativus]
Length = 787
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 46/90 (51%), Gaps = 1/90 (1%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+L V ++++G ++GRGG + ++ +GA I++ P++ P + ++V G+ ++
Sbjct: 286 QLQVPNEKVGLIIGRGGETIKSLQTRSGARIQLIPQN-LPEGDESKERTIRVTGDKKQIE 344
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP 120
A I + +T+ P N +Y P
Sbjct: 345 IATDMIKEVMNQTVRPSPHSTGFNQQAYRP 374
>gi|393236643|gb|EJD44191.1| eukaryotic type KH-domain (KH-domain type I) [Auricularia delicata
TFB-10046 SS5]
Length = 450
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQVIGNYHSV 89
++ + + +GC++G+GG ++E+R + ++I++ P G P++ +V + G H++
Sbjct: 366 QIFIPNDLVGCIIGKGGSKINEIRHLSASAIKIMEPGVAGDAGGGPNERLVTITGAPHNI 425
Query: 90 QDALFHITSRLRE 102
Q A+ + RL +
Sbjct: 426 QMAVSLLYQRLEQ 438
>gi|219887089|gb|ACL53919.1| unknown [Zea mays]
gi|414868823|tpg|DAA47380.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 217
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A + T + +P Y V G +++S+IR+ SGA + + + PG E V ++G
Sbjct: 83 NQAHGSSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPG--EMTVEITG 140
Query: 297 TSDQMRAAQSLIHAFI 312
++ Q++ AQ LI F+
Sbjct: 141 SASQVQTAQQLIKNFM 156
>gi|307196422|gb|EFN78011.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Harpegnathos
saltator]
Length = 647
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E G+ G + +LV S Q+G ++G+GG V E++R TG+ I+ + QA
Sbjct: 445 IFEKMREEGYVSGTEDVRLTIEILVPSAQVGRIIGKGGQNVRELQRVTGSVIK-LSEQQA 503
Query: 70 PRCGSPHDEIVQVIGNYHSVQDALFHI 96
+ + V +IG + SVQ A I
Sbjct: 504 TPPSADEETTVHIIGPFFSVQSAQRRI 530
>gi|242764737|ref|XP_002340835.1| KH domain RNA binding protein [Talaromyces stipitatus ATCC 10500]
gi|218724031|gb|EED23448.1| KH domain RNA binding protein [Talaromyces stipitatus ATCC 10500]
Length = 461
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 66/301 (21%), Positives = 121/301 (40%), Gaps = 55/301 (18%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+ IG ++G+GG + E++ A+GA R+ D + +V +G +V
Sbjct: 190 RLLIPHILIGSIIGKGGVRIREIQEASGA--RLNASDACLPLSTERSLVV--LGVADAVH 245
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLP--------PFPEMPPPPFRPRHNPASPGSY 142
A +++ L E + +R G +Y M P+ P
Sbjct: 246 IATYYVAVTLVEQL--TERFGGPAASAYATRSGGPAGVVPGGMQVVPYVP---------- 293
Query: 143 PSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPP 202
QP Q + P N+ P PYG+ GP
Sbjct: 294 -----------------QPAGGQYGHPDSVRRHYPQNNRPGPGPYGAPYAHGGPAAQ--- 333
Query: 203 SPRSWTPQGVGGGDPRGFDASSG-------FTPRNRPVESGNH--AAILTS--TTIEVVI 251
+P + P GGG R A +G P +P +G A +++S T ++ I
Sbjct: 334 APVAQPPLHYGGGAARAPYAGAGPHQPAPYGAPHAQPHGAGAQPLAGVVSSQPITQQIYI 393
Query: 252 PQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311
P + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A +++A
Sbjct: 394 PNDMVGAIIGKGGTKINEIRHLSGSVIKINEPQENSNERLVTITGTQECNQMALYMLYAR 453
Query: 312 I 312
+
Sbjct: 454 L 454
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IRQ+SG+ V+D GA E ++ VSG D + A
Sbjct: 106 IRAVISSQEAATCIGKGGENVSKIRQLSGSKCTVSDYSRGAVERILTVSGPQDAVAKAFG 165
Query: 307 LI 308
LI
Sbjct: 166 LI 167
>gi|432092458|gb|ELK25073.1| Poly(rC)-binding protein 4 [Myotis davidii]
Length = 403
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL-----PPFPEMPPPP 129
V + G+ S+ A + IT+ L ET P++ + L PP +P P
Sbjct: 289 VTITGSPVSIALAQYLITACL-ETAKSTSGGTPSSAPADLSTPFSPPLTALPTAP 342
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
>gi|417410720|gb|JAA51826.1| Putative polyc-binding alphacp-1, partial [Desmodus rotundus]
Length = 440
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 271 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 325
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 326 VTITGSPVSIALAQYLITACLE 347
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 282 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 341
Query: 308 IHAFI 312
I A +
Sbjct: 342 ITACL 346
>gi|241025456|ref|XP_002406183.1| poly(rc) binding protein, putative [Ixodes scapularis]
gi|215491885|gb|EEC01526.1| poly(rc) binding protein, putative [Ixodes scapularis]
Length = 398
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIH 309
IP + + G+ S ++ IRQ+SGA + +++ + G+ + V +SGT + + AQ LI+
Sbjct: 226 IPNDLIGCIIGKGGSKINEIRQLSGATIKISNSEEGSKDRTVTISGTPEAINLAQYLIN 284
>gi|3402264|emb|CAA63936.1| heterogeneous nuclear ribonucleoprotein [Sus scrofa]
Length = 135
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 57 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 116
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 117 AQYLIN 122
>gi|397495989|ref|XP_003818826.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Pan paniscus]
gi|397495991|ref|XP_003818827.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pan paniscus]
Length = 403
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|312079807|ref|XP_003142332.1| hypothetical protein LOAG_06748 [Loa loa]
gi|307762504|gb|EFO21738.1| hypothetical protein LOAG_06748 [Loa loa]
Length = 342
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%)
Query: 236 GNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS 295
G ++ I T +V IP + G+ S ++ +R+ SGA + V + + ++ +S
Sbjct: 253 GRYSPIPAMQTTQVTIPDELGGAIIGKGGSRINRVREESGAQIEVEPHRDNGGDRIITIS 312
Query: 296 GTSDQMRAAQSLIHAFI 312
GT +Q++AAQ L+ +
Sbjct: 313 GTREQIQAAQYLLQQCV 329
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66
++LVH G ++GRGG + E+R TGA ++VF +
Sbjct: 118 KVLVHESHAGAVIGRGGSRIKELREKTGAQLKVFSR 153
>gi|393911422|gb|EJD76298.1| KH domain-containing protein [Loa loa]
Length = 632
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 11/110 (10%)
Query: 13 VHSRIAEIG--FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP 70
++ RIAE + + + V S+ +G ++G+GG V E++R TGA +++ P D
Sbjct: 517 IYQRIAEQSCHYMDEVRLCTEIAVPSRLVGRIIGKGGQNVRELQRMTGAQVKI-PDDTGD 575
Query: 71 RCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRP---GPNNGHS 117
+ IV+V+GN+ S Q + +RL + I + GP NG S
Sbjct: 576 D-ETQKATIVRVLGNFQSSQ----AVQARLSQLINDFSQRLNIGPTNGQS 620
>gi|9931476|gb|AAG02185.1| RNA binding protein MCG10 [Homo sapiens]
gi|119585575|gb|EAW65171.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585578|gb|EAW65174.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
gi|119585579|gb|EAW65175.1| poly(rC) binding protein 4, isoform CRA_d [Homo sapiens]
Length = 369
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 200 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 254
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 255 VTITGSPVSIALAQYLITACLE 276
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 211 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 270
Query: 308 IHAFI 312
I A +
Sbjct: 271 ITACL 275
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 69 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 128
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 129 VRQICAVIL 137
>gi|14670369|ref|NP_127501.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|14670373|ref|NP_127503.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|291575148|ref|NP_001167571.1| poly(rC)-binding protein 4 isoform c [Homo sapiens]
gi|114587184|ref|XP_001170982.1| PREDICTED: poly(rC)-binding protein 4 isoform 12 [Pan troglodytes]
gi|114587188|ref|XP_001171026.1| PREDICTED: poly(rC)-binding protein 4 isoform 14 [Pan troglodytes]
gi|410037040|ref|XP_003950173.1| PREDICTED: poly(rC)-binding protein 4 [Pan troglodytes]
gi|12230429|sp|P57723.1|PCBP4_HUMAN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957167|gb|AAG09241.1|AF176330_1 alphaCP-4 [Homo sapiens]
gi|10436225|dbj|BAB14761.1| unnamed protein product [Homo sapiens]
gi|12804299|gb|AAH03008.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|13278756|gb|AAH04153.1| Poly(rC) binding protein 4 [Homo sapiens]
gi|119585571|gb|EAW65167.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585572|gb|EAW65168.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585573|gb|EAW65169.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585576|gb|EAW65172.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|119585577|gb|EAW65173.1| poly(rC) binding protein 4, isoform CRA_c [Homo sapiens]
gi|261861404|dbj|BAI47224.1| poly(rC) binding protein 4 [synthetic construct]
gi|410227440|gb|JAA10939.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227442|gb|JAA10940.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410227444|gb|JAA10941.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262892|gb|JAA19412.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262894|gb|JAA19413.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410262896|gb|JAA19414.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301312|gb|JAA29256.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410301314|gb|JAA29257.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350315|gb|JAA41761.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350319|gb|JAA41763.1| poly(rC) binding protein 4 [Pan troglodytes]
gi|410350321|gb|JAA41764.1| poly(rC) binding protein 4 [Pan troglodytes]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|410951299|ref|XP_003982335.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Felis catus]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|335299138|ref|XP_003358505.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Sus scrofa]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 57/115 (49%), Gaps = 12/115 (10%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL-----PPFPEMPPPP 129
V + G+ S+ A + IT+ L ET P++ + L PP +P P
Sbjct: 289 VTITGSPVSIALAQYLITACL-ETAKSTSGGTPSSAPTDLPAPFSPPLTALPTAP 342
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|258574629|ref|XP_002541496.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901762|gb|EEP76163.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 491
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 134 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYTRGAVERILTVSGPQDAVAKAFG 193
Query: 307 LI 308
LI
Sbjct: 194 LI 195
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQVIGNY 86
+ ++ + + +G ++G+GG ++E+R +G+ I++ P+D + ++ +V + G
Sbjct: 415 LTQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNS------NERLVTITGTQ 468
Query: 87 HSVQDALFHITSRLRET 103
Q AL+ + SRL E+
Sbjct: 469 ECNQMALYMLYSRLGES 485
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|426340771|ref|XP_004034301.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Gorilla gorilla
gorilla]
gi|426340773|ref|XP_004034302.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Gorilla gorilla
gorilla]
gi|426340775|ref|XP_004034303.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Gorilla gorilla
gorilla]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|395832731|ref|XP_003789409.1| PREDICTED: poly(rC)-binding protein 4 [Otolemur garnettii]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|73985377|ref|XP_849987.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Canis lupus
familiaris]
gi|301767222|ref|XP_002919000.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Ailuropoda
melanoleuca]
Length = 403
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|149728835|ref|XP_001494599.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Equus
caballus]
Length = 403
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
>gi|326488325|dbj|BAJ93831.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 520
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P Y V G +N+S+IR+ SGA + + + PG E V ++G++ Q++ AQ LI
Sbjct: 400 VPLSYADAVIGSAGANISYIRKHSGATISIQEGVPG--EMTVEIAGSASQVQTAQQLIKN 457
Query: 311 FI 312
F+
Sbjct: 458 FM 459
>gi|9931474|gb|AAG02184.1|AF257770_1 RNA binding protein MCG10 [Homo sapiens]
gi|9931478|gb|AAG02186.1| RNA binding protein MCG10 [Homo sapiens]
gi|119585569|gb|EAW65165.1| poly(rC) binding protein 4, isoform CRA_a [Homo sapiens]
gi|119585574|gb|EAW65170.1| poly(rC) binding protein 4, isoform CRA_a [Homo sapiens]
Length = 424
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 255 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 309
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 310 VTITGSPVSIALAQYLITACLE 331
Score = 41.6 bits (96), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 266 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 325
Query: 308 IHAFI 312
I A +
Sbjct: 326 ITACL 330
>gi|296489238|tpg|DAA31351.1| TPA: poly(rC) binding protein 1-like [Bos taurus]
Length = 107
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
T TT E+ IP + + G +N++ IRQ+S A + + +P G++ V ++G++ +
Sbjct: 29 TQTTHELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIANPVEGSSGRQVTITGSAASIS 88
Query: 303 AAQSLIHA 310
AQ LI+A
Sbjct: 89 LAQYLINA 96
>gi|296225349|ref|XP_002758447.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Callithrix
jacchus]
gi|296225353|ref|XP_002758449.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Callithrix
jacchus]
gi|297671175|ref|XP_002813714.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Pongo abelii]
gi|297671177|ref|XP_002813715.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Pongo abelii]
gi|395733705|ref|XP_003776278.1| PREDICTED: poly(rC)-binding protein 4 [Pongo abelii]
Length = 403
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|386780909|ref|NP_001247796.1| poly(rC)-binding protein 4 [Macaca mulatta]
gi|332216103|ref|XP_003257183.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|332216105|ref|XP_003257184.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|332216107|ref|XP_003257185.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|402859923|ref|XP_003894386.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Papio anubis]
gi|402859925|ref|XP_003894387.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Papio anubis]
gi|402859927|ref|XP_003894388.1| PREDICTED: poly(rC)-binding protein 4 isoform 3 [Papio anubis]
gi|403291118|ref|XP_003936646.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
gi|403291120|ref|XP_003936647.1| PREDICTED: poly(rC)-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
gi|355559585|gb|EHH16313.1| hypothetical protein EGK_11579 [Macaca mulatta]
gi|355746662|gb|EHH51276.1| hypothetical protein EGM_10621 [Macaca fascicularis]
gi|380788331|gb|AFE66041.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|380788333|gb|AFE66042.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|383414707|gb|AFH30567.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
gi|384943104|gb|AFI35157.1| poly(rC)-binding protein 4 isoform c [Macaca mulatta]
Length = 403
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|449473856|ref|XP_004186185.1| PREDICTED: LOW QUALITY PROTEIN: poly(rC) binding protein 4
[Taeniopygia guttata]
Length = 245
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 41/68 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S++ E ++P + + G + S +S IRQ+SGA++ + + G++E V ++GT +
Sbjct: 178 SSSQEFLVPNDLIGCIIGRHGSKISEIRQMSGAHIKIGNQTEGSSERHVTITGTPVSITL 237
Query: 304 AQSLIHAF 311
AQ LI A+
Sbjct: 238 AQYLITAW 245
>gi|405976740|gb|EKC41236.1| Insulin-like growth factor 2 mRNA-binding protein 1 [Crassostrea
gigas]
Length = 416
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 18 AEIGFEPGQAVVAR--LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
E GF+ + V R +LV IG ++G+GG V EM+R +GA ++V ++ +
Sbjct: 305 TEGGFQRIEEVHLRSEVLVPRSMIGRIIGKGGQNVREMQRVSGAIVKVPDQNSQTQSDGD 364
Query: 76 HDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGP 112
+ V +IG+++++Q A+ R+R + P + GP
Sbjct: 365 MEVAVSIIGHFYAMQPAI----RRIRSLVNPRPQQGP 397
>gi|348518109|ref|XP_003446574.1| PREDICTED: poly(rC)-binding protein 3-like [Oreochromis niloticus]
Length = 349
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 265 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISL 324
Query: 304 AQSLIHA 310
AQ LI+A
Sbjct: 325 AQYLINA 331
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + EMR +TGA ++V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
>gi|431913482|gb|ELK15157.1| Poly(rC)-binding protein 4 [Pteropus alecto]
Length = 403
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
>gi|383139538|gb|AFG51032.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139540|gb|AFG51033.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139542|gb|AFG51034.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139544|gb|AFG51035.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139546|gb|AFG51036.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139548|gb|AFG51037.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139550|gb|AFG51038.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139552|gb|AFG51039.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
gi|383139554|gb|AFG51040.1| Pinus taeda anonymous locus CL1760Contig1_04 genomic sequence
Length = 76
Score = 42.4 bits (98), Expect = 0.30, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 2/75 (2%)
Query: 227 TPRNRPVESG-NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP 285
T + P SG + A ++T TT+EVVIP+ +A + + ++ I QISGA V + + +P
Sbjct: 1 TKQGGPKGSGISTAGLVTKTTVEVVIPEHAIAPLIANSGKGVTQISQISGAKVNLLEVRP 60
Query: 286 GATEGVVMVSGTSDQ 300
G ++ V+ +SGT +Q
Sbjct: 61 G-SDKVIEISGTPEQ 74
>gi|343424730|emb|CBQ68268.1| related to poly(rC)-binding protein 3 [Sporisorium reilianum SRZ2]
Length = 436
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 228 PRNRPVESGNHAA--ILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK- 284
P N PV++ A ST++ ++I M V G + HI+ +SGA +V +
Sbjct: 118 PLNTPVQADGSPAESAAQSTSVRLLISHNLMGTVIGRQGLKIKHIQDLSGARMVASKEML 177
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
P +TE VV V G+ D +R A IH + C
Sbjct: 178 PQSTERVVEVQGSVDSIRVA---IHEIVKC 204
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 22 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI---RVFPKDQAPRCGSPHDE 78
+P ++ R LV +++ G ++G+GG V+++R TG +V P HD
Sbjct: 41 IDPNATLLVRALVSTKEAGIIIGKGGANVADLREQTGVKAGVSKVVP--------GVHDR 92
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
++ V G + DA I + E P+ P +G
Sbjct: 93 VLSVTGTLVGIADAFALIAKTILEN--PLNTPVQADG 127
>gi|242061024|ref|XP_002451801.1| hypothetical protein SORBIDRAFT_04g007950 [Sorghum bicolor]
gi|241931632|gb|EES04777.1| hypothetical protein SORBIDRAFT_04g007950 [Sorghum bicolor]
Length = 688
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 12/121 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
++ + + ++G ++G+GG + M++ TGA I+V P P + + V + G ++
Sbjct: 240 QMKIANNKVGLVIGKGGETIKSMQQKTGARIQVIPL-HLPAGDTSTERTVHIDGTPEQIE 298
Query: 91 DA---LFHITSRLRETIFPMKRPGPNNGHSYLPPFPEM---PP--PPFRPRHNPASPGSY 142
A + +TS R PM G + Y PP P+ PP PP +P + PG+Y
Sbjct: 299 SAKQLVIEVTSENR-ARNPMS--GGYSQQGYRPPRPQSNWGPPSAPPQQPGYGYMQPGAY 355
Query: 143 P 143
P
Sbjct: 356 P 356
>gi|432848574|ref|XP_004066413.1| PREDICTED: poly(rC)-binding protein 3-like [Oryzias latipes]
Length = 349
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 265 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANAMEGSSERQITITGTPANISL 324
Query: 304 AQSLIHA 310
AQ LI+A
Sbjct: 325 AQYLINA 331
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + EMR +TGA ++V
Sbjct: 100 VTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
>gi|344266065|ref|XP_003405101.1| PREDICTED: poly(rC)-binding protein 2-like isoform 2 [Loxodonta
africana]
Length = 293
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 40/66 (60%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ +
Sbjct: 215 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 274
Query: 304 AQSLIH 309
AQ LI+
Sbjct: 275 AQYLIN 280
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +++
Sbjct: 17 RLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTNAIF 69
Query: 91 DALFHITSRLRETI 104
A I +L E I
Sbjct: 70 KAFAMIIDKLEEDI 83
>gi|90652817|ref|NP_001035073.1| uncharacterized protein LOC664755 [Danio rerio]
gi|68533566|gb|AAH98540.1| Zgc:110045 [Danio rerio]
Length = 222
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RLL+H +++G ++G+ G V +MR +GA I + GS + IV + G +
Sbjct: 20 RLLMHGKEVGSIIGKKGETVKKMREESGARINISD-------GSSPERIVTITGASEVIF 72
Query: 91 DALFHITSRLRETIF 105
A I + E I
Sbjct: 73 KAFAMIAEKFEEDIL 87
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+ + Q G L+G+GG + E+R +TGA ++V D P + V + G H
Sbjct: 101 VTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDLLP---DSTERAVTISGTPH 156
Query: 88 SVQDALFHITSRLRET-----IFPMK-RPGPNNGHSYL 119
++ + HI + + E+ P + +P GH+ L
Sbjct: 157 AITQCVKHICTVMLESPPKGATIPYRPKPSAGGGHTVL 194
>gi|45198501|ref|NP_985530.1| AFL018Cp [Ashbya gossypii ATCC 10895]
gi|44984452|gb|AAS53354.1| AFL018Cp [Ashbya gossypii ATCC 10895]
gi|374108759|gb|AEY97665.1| FAFL018Cp [Ashbya gossypii FDAG1]
Length = 392
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
A++ P R VE N +TS E+ I +L + +V G N++ I++ +G ++ +
Sbjct: 281 ANNLALPHVRIVEGINPQTRITSVVQEIFIEELMVGNVIGRGGKNITQIKESTGCSIQIA 340
Query: 282 DPKPGATEGVVMVSGT 297
DP PG E + + GT
Sbjct: 341 DPVPGKDERKLTIIGT 356
>gi|390604812|gb|EIN14203.1| hypothetical protein PUNSTDRAFT_95868 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 330
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 12/69 (17%)
Query: 36 SQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE----IVQVIGNYHSVQD 91
S +GC++GRGG ++E+RR +G+ I + +PHDE + ++G + +
Sbjct: 253 SDMVGCIIGRGGSKITEIRRLSGSKISI--------AKAPHDETGERMFTIVGTPEANEK 304
Query: 92 ALFHITSRL 100
ALF + ++L
Sbjct: 305 ALFLLYNQL 313
>gi|345564609|gb|EGX47569.1| hypothetical protein AOL_s00083g77 [Arthrobotrys oligospora ATCC
24927]
Length = 459
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 236 GNHAAIL--TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
GN AA++ T ++ IP + + G+ + ++ IRQ+SG+ + +N+P+ + E +V
Sbjct: 374 GNMAAMIPGAPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNSNERLVT 433
Query: 294 VSGTSDQMRAAQSLIHAFI 312
++GT + + A ++++ +
Sbjct: 434 ITGTQECNQMALYMLYSRL 452
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 381 PGAPLTQQIYIPNDMVGAIIGKGGAKINEIRQLSGSVIKINEPQDNS------NERLVTI 434
Query: 83 IGNYHSVQDALFHITSRLR 101
G Q AL+ + SRL
Sbjct: 435 TGTQECNQMALYMLYSRLE 453
>gi|119193374|ref|XP_001247293.1| hypothetical protein CIMG_01064 [Coccidioides immitis RS]
gi|303312121|ref|XP_003066072.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240105734|gb|EER23927.1| KH domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320040053|gb|EFW21987.1| KH domain RNA binding protein [Coccidioides posadasii str.
Silveira]
gi|392863461|gb|EAS35786.2| KH domain RNA binding protein [Coccidioides immitis RS]
Length = 489
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A G+ N+S IR++SGA V+D GA E ++ VSG D + A
Sbjct: 135 IRAVISSAEAATCIGKGGENVSQIRRLSGAKCTVSDYTRGAVERILTVSGPQDAVAKAFG 194
Query: 307 LI 308
LI
Sbjct: 195 LI 196
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IR +SG+ + +N+P+ + E +V ++GT + + A
Sbjct: 416 TQQIFIPNDMVGAIIGKGGAKINEIRHLSGSVIKINEPQDNSNERLVTITGTQECNQMAL 475
Query: 306 SLIHAFI 312
++++ +
Sbjct: 476 YMLYSRL 482
>gi|342880970|gb|EGU81981.1| hypothetical protein FOXB_07505 [Fusarium oxysporum Fo5176]
Length = 471
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A V G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 113 IRAVISSPEAATVIGKGGENVSNIRKLSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 172
Query: 307 LI 308
LI
Sbjct: 173 LI 174
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEI 79
G PG + ++ + + +G ++G+GG ++E+R+ + + I++ P+D + ++ +
Sbjct: 387 GAIPGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSNSVIKINEPQDNS------NERL 440
Query: 80 VQVIGNYHSVQDALFHITSRLRET 103
V + G + AL+ + SRL E
Sbjct: 441 VTITGTEECNRMALYMLYSRLGEV 464
>gi|126336339|ref|XP_001367908.1| PREDICTED: poly(rC)-binding protein 4-like isoform 1 [Monodelphis
domestica]
Length = 410
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 21 GFEP-GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGSGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYL-PPF-PEMPPPPFRPRHNPA 137
V + G+ S+ A + IT+ L ET P +G + L PF P + P P A
Sbjct: 289 VTITGSPVSIALAQYLITACL-ETAKSTSGGTPGSGTADLSAPFSPPLAPSPALTALPAA 347
Query: 138 SPGSYPSPVGPFHSMDRGMGP 158
PG +P S G+ P
Sbjct: 348 PPGLLGTPYAISLSNFIGLKP 368
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + G+ E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGSGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
>gi|198285613|gb|ACH85345.1| poly(rC) binding protein 2-like [Salmo salar]
Length = 114
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 228 PRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGA 287
P N + G A+ TS+ E+ IP + + G S ++ IRQ+SGA + + +P G+
Sbjct: 21 PNNPGFQGGMDASAQTSSH-EMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPVEGS 79
Query: 288 TEGVVMVSGTSDQMRAAQSLIHA 310
+ V ++G++ + A+ LI+A
Sbjct: 80 ADRQVTITGSAASISLAEYLINA 102
>gi|17384400|emb|CAD13196.1| hnRNP-E2 protein copy b [Xenopus laevis]
Length = 251
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 164 SGGIDASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 223
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 224 TGSTASISLAQYLIN 238
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
QA L + + IGC++GR G ++E+R+ +GA I++ P GS +D V + G+
Sbjct: 172 QATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGS-NDRQVTITGS 226
Query: 86 YHSVQDALFHITSRL 100
S+ A + I RL
Sbjct: 227 TASISLAQYLINVRL 241
>gi|297825693|ref|XP_002880729.1| hypothetical protein ARALYDRAFT_481452 [Arabidopsis lyrata subsp.
lyrata]
gi|297326568|gb|EFH56988.1| hypothetical protein ARALYDRAFT_481452 [Arabidopsis lyrata subsp.
lyrata]
Length = 634
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 50/104 (48%), Gaps = 14/104 (13%)
Query: 215 GDPRGFDAS-------SGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
GD +GF + SG P + PV G+ TT ++ IP + + + G+ +
Sbjct: 101 GDNKGFSSYPSEGKQMSGTPPSSIPVSYGS----FQGTTKKIDIPNMRVGVIIGKGGETI 156
Query: 268 SHIRQISGANVVVN---DPKPGATEGVVMVSGTSDQMRAAQSLI 308
+++ SGA + V D P AT V ++GT DQ+ A+ LI
Sbjct: 157 KYLQLQSGAKIQVTRDMDADPNATTRTVDLTGTPDQISKAEQLI 200
>gi|54037961|gb|AAH84195.1| Pcbp2 protein [Xenopus laevis]
Length = 353
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 266 SGGIDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 325
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 326 TGSTASISLAQYLIN 340
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFSMIIDKLEEDI 83
>gi|53749712|ref|NP_001005451.1| poly(rC) binding protein 3 [Xenopus (Silurana) tropicalis]
gi|49250542|gb|AAH74565.1| poly(rC) binding protein 2 [Xenopus (Silurana) tropicalis]
gi|89266917|emb|CAJ82240.1| novel protein similar to poly(rC) binding protein 2 [Xenopus
(Silurana) tropicalis]
Length = 353
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 266 SGGIDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 325
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 326 TGSTASISLAQYLIN 340
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFSMIIDKLEEDI 83
>gi|355733306|gb|AES10986.1| poly binding protein 2 [Mustela putorius furo]
Length = 94
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 227 TPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG 286
+P + +G A+ TS+ E+ IP + + G + ++ IRQ+SGA + + +P G
Sbjct: 2 SPEVKGYWAGLDASAQTSSH-ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEG 60
Query: 287 ATEGVVMVSGTSDQMRAAQSLIH 309
+T+ V ++G++ + AQ LI+
Sbjct: 61 STDRQVTITGSAASISLAQYLIN 83
>gi|147901405|ref|NP_001084264.1| poly(rC) binding protein 2 [Xenopus laevis]
gi|5459450|emb|CAB50743.1| hnRNP-E2 protein [Xenopus laevis]
Length = 353
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 266 SGGIDASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 325
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 326 TGSTASISLAQYLIN 340
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFSMIIDKLEEDI 83
>gi|148226696|ref|NP_001080123.1| poly(rC) binding protein 3 [Xenopus laevis]
gi|27370875|gb|AAH41241.1| Pcbp2b protein [Xenopus laevis]
Length = 353
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 266 SGGIDASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 325
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 326 TGSTASISLAQYLIN 340
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFSMIIDKLEEDI 83
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
QA L + + IGC++GR G ++E+R+ +GA I++ P GS +D V + G+
Sbjct: 274 QATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGS-NDRQVTITGS 328
Query: 86 YHSVQDALFHITSRL 100
S+ A + I RL
Sbjct: 329 TASISLAQYLINVRL 343
>gi|302837871|ref|XP_002950494.1| hypothetical protein VOLCADRAFT_104736 [Volvox carteri f.
nagariensis]
gi|300264043|gb|EFJ48240.1| hypothetical protein VOLCADRAFT_104736 [Volvox carteri f.
nagariensis]
Length = 907
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
TT+E+ P++ + V G+ + + IRQ SGA+V V D +PG +VM+ G+ +Q++
Sbjct: 303 ETTVEI-YPEM-VGSVLGKAGATIKVIRQKSGAHVRVEDLQPGERMQLVMIHGSIEQVKT 360
Query: 304 AQSLIHAFI 312
A + + I
Sbjct: 361 AYAEVKGII 369
>gi|302926012|ref|XP_003054209.1| hypothetical protein NECHADRAFT_30745 [Nectria haematococca mpVI
77-13-4]
gi|256735150|gb|EEU48496.1| hypothetical protein NECHADRAFT_30745 [Nectria haematococca mpVI
77-13-4]
Length = 472
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 242 LTSTT---IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
L TT I VI A V G+ N+S+IR++S A V+D + GA E ++ VSG
Sbjct: 106 LDETTWIHIRAVISSPEAATVIGKGGENVSNIRKLSNARCTVSDYQKGAVERILTVSGIV 165
Query: 299 DQMRAAQSLI 308
D + A LI
Sbjct: 166 DAVAKAFGLI 175
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ + + I++ P+D + ++ +V +
Sbjct: 391 PGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSNSVIKINEPQDNS------NERLVTI 444
Query: 83 IGNYHSVQDALFHITSRLRET 103
G + AL+ + SRL E
Sbjct: 445 TGTEECNRMALYMLYSRLGEV 465
>gi|317418810|emb|CBN80848.1| PolyrC-binding protein 2 [Dicentrarchus labrax]
Length = 306
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
++ GFT + ++ +H E+ IP + + G + ++ IRQ+SGA + +
Sbjct: 226 SNQGFTGIDASAQTSSH---------EMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 276
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P G+T+ V ++G+ + A+ LI+A
Sbjct: 277 NPVDGSTDRQVTITGSPASISLAEYLINA 305
>gi|157114471|ref|XP_001652287.1| igf2 mRNA binding protein, putative [Aedes aegypti]
gi|108877277|gb|EAT41502.1| AAEL006876-PA [Aedes aegypti]
Length = 541
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 13 VHSRIAEIGFEPGQA---VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + +LV S Q+G ++G+GG V E++R TG+ I+ P+
Sbjct: 413 IFEKMREEGFVSGTDDVRLTVEILVPSAQVGRIIGKGGQNVRELQRVTGSIIK-LPEHT- 470
Query: 70 PRCGSPHDE--IVQVIGNYHSVQDALFHITSRLRET 103
+P DE V +IG + SVQ A I + + T
Sbjct: 471 --TNTPVDEETTVHIIGPFFSVQSAQRRIRTMMLAT 504
>gi|156388117|ref|XP_001634548.1| predicted protein [Nematostella vectensis]
gi|156221632|gb|EDO42485.1| predicted protein [Nematostella vectensis]
Length = 338
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVV-NDPKPGATEGVVMVSGTSDQMRAA 304
T+ +++P + G+ + + IR++SGA+VVV + PG++E V +SGT + +
Sbjct: 109 TLRLIVPGSQCGSIIGKGGAKIKEIREVSGASVVVAGEFLPGSSERAVTLSGTPEALETC 168
Query: 305 QSLIHAFILCGV 316
L LCGV
Sbjct: 169 IDL-----LCGV 175
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%), Gaps = 2/69 (2%)
Query: 242 LTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQM 301
+TS T+ ++ + + + G+ S ++ IRQ+SGA++ + D + G + V+++GT++ +
Sbjct: 246 ITSHTMTIL--KGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDKREVLITGTAEAV 303
Query: 302 RAAQSLIHA 310
AQ LI+A
Sbjct: 304 GLAQFLINA 312
>gi|28317389|tpe|CAD29864.1| TPA: hnRNP-E2 b [Xenopus laevis]
Length = 319
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG A +T+ E+ IP + + G + ++ IRQ+SGA + + +P G+ + V +
Sbjct: 232 SGGIDASAQATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSNDRQVTI 291
Query: 295 SGTSDQMRAAQSLIH 309
+G++ + AQ LI+
Sbjct: 292 TGSTASISLAQYLIN 306
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFSMIIDKLEEDI 83
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
QA L + + IGC++GR G ++E+R+ +GA I++ P GS +D V + G+
Sbjct: 240 QATSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGS-NDRQVTITGS 294
Query: 86 YHSVQDALFHITSRL 100
S+ A + I RL
Sbjct: 295 TASISLAQYLINVRL 309
>gi|358379880|gb|EHK17559.1| hypothetical protein TRIVIDRAFT_231881 [Trichoderma virens Gv29-8]
Length = 477
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R A
Sbjct: 401 TQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTEECNRMAL 460
Query: 306 SLIHAFI 312
++++ +
Sbjct: 461 YMLYSRL 467
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 118 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 177
Query: 307 LI 308
LI
Sbjct: 178 LI 179
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQVIGNY 86
+ ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V + G
Sbjct: 400 ITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNS------NERLVTITGTE 453
Query: 87 HSVQDALFHITSRLRET 103
+ AL+ + SRL ET
Sbjct: 454 ECNRMALYMLYSRLGET 470
>gi|432857624|ref|XP_004068722.1| PREDICTED: poly(rC)-binding protein 2-like [Oryzias latipes]
Length = 317
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 47/89 (52%), Gaps = 9/89 (10%)
Query: 222 ASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281
++ GFT + ++ +H E+ IP + + G + ++ IRQ+SGA + +
Sbjct: 226 SNQGFTGIDASAQTSSH---------EMTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIA 276
Query: 282 DPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P G+T+ V ++G+ + A+ LI+A
Sbjct: 277 NPVDGSTDRQVTITGSPASISLAEYLINA 305
>gi|390355846|ref|XP_003728637.1| PREDICTED: LOW QUALITY PROTEIN: heterogeneous nuclear
ribonucleoprotein K-like [Strongylocentrotus purpuratus]
Length = 345
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
+TT++V IP + V G + +IR S A + + +P P A + V+ + GT +Q+
Sbjct: 269 TTTLQVTIPNDLVGAVIGRGGERIRNIRSRSQAEIEIANPLPEAEDRVITIRGTQEQISH 328
Query: 304 AQSLIHAFI 312
AQ L+ I
Sbjct: 329 AQFLLQNCI 337
>gi|357621941|gb|EHJ73587.1| hypothetical protein KGM_22691 [Danaus plexippus]
Length = 431
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++ IGC++G+GG ++E+R+ +GA IR+ ++ R G D + + GN SV
Sbjct: 281 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGSTDRTITISGNPDSVA 338
Query: 91 DALFHI 96
A + I
Sbjct: 339 LAQYLI 344
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP---GATEGVVMVSGTSDQMRAA 304
E+ +P + + G+ + ++ IRQISGA + +++ + G+T+ + +SG D + A
Sbjct: 281 EMTVPNELIGCIIGKGGTKIAEIRQISGAMIRISNCEEREGGSTDRTITISGNPDSVALA 340
Query: 305 QSLIH 309
Q LI+
Sbjct: 341 QYLIN 345
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 21/112 (18%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RL+V + Q G L+G+GG + E+R TG R++ + + + V + G
Sbjct: 78 ITLRLIVPASQCGSLIGKGGSKIKEIRDVTG---RLYVHVASEMLPNSTERAVTISGTCD 134
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASP 139
++ ++HI + E+ P P+ P+RP+ N A P
Sbjct: 135 AITQCIYHICCVMLES--P----------------PKGATIPYRPKPNVAGP 168
>gi|340521021|gb|EGR51256.1| predicted protein [Trichoderma reesei QM6a]
Length = 475
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 40/67 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ ++ IRQ+SG+ + +N+P+ + E +V ++GT + R A
Sbjct: 402 TQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNSNERLVTITGTEECNRMAL 461
Query: 306 SLIHAFI 312
++++ +
Sbjct: 462 YMLYSRL 468
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
I VI A + G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 121 IRAVISSPEAATIIGKGGENVSNIRKMSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 180
Query: 307 LI 308
LI
Sbjct: 181 LI 182
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV-FPKDQAPRCGSPHDEIVQV 82
PG + ++ + + +G ++G+GG ++E+R+ +G+ I++ P+D + ++ +V +
Sbjct: 397 PGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSGSVIKINEPQDNS------NERLVTI 450
Query: 83 IGNYHSVQDALFHITSRLR 101
G + AL+ + SRL
Sbjct: 451 TGTEECNRMALYMLYSRLE 469
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
S TI ++P M V G+ S + I++ SGA + + PG+TE V+ +SG +D +
Sbjct: 629 SVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISGVADAVH 688
Query: 303 AAQSLIHAFIL 313
A + + +L
Sbjct: 689 IAVYYVGSILL 699
>gi|321258532|ref|XP_003193987.1| telomere length regulating RNA binding protein; Pbp2p [Cryptococcus
gattii WM276]
gi|317460457|gb|ADV22200.1| Telomere length regulating RNA binding protein, putative; Pbp2p
[Cryptococcus gattii WM276]
Length = 357
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ S + I++ SGA + ++ PG+TE V+ VSG +D +
Sbjct: 162 AVTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVH 221
Query: 303 AAQSLIHAFIL 313
A I +L
Sbjct: 222 IAVYYIGTILL 232
>gi|58259741|ref|XP_567283.1| cytoplasm protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134116752|ref|XP_773048.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255668|gb|EAL18401.1| hypothetical protein CNBJ3240 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229333|gb|AAW45766.1| cytoplasm protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 357
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ S + I++ SGA + ++ PG+TE V+ VSG +D +
Sbjct: 162 AVTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVH 221
Query: 303 AAQSLIHAFIL 313
A I +L
Sbjct: 222 IAVYYIGTILL 232
>gi|408389667|gb|EKJ69103.1| hypothetical protein FPSE_10721 [Fusarium pseudograminearum CS3096]
Length = 474
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQS 306
+ VI A V G+ N+S+IR++S A V+D + GA E ++ VSG D + A
Sbjct: 115 VRAVISSPEAATVIGKGGENVSNIRKLSNAKCTVSDYQKGAVERILTVSGIVDAVAKAFG 174
Query: 307 LI 308
LI
Sbjct: 175 LI 176
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEI 79
G PG + ++ + + +G ++G+GG ++E+R+ + + I++ P+D + ++ +
Sbjct: 390 GAIPGGPITQQIYIPNDMVGAIIGKGGQKINEIRQMSNSVIKINEPQDNS------NERL 443
Query: 80 VQVIGNYHSVQDALFHITSRLRE 102
V + G + AL+ + SRL E
Sbjct: 444 VTITGTEECNRMALYMLYSRLGE 466
>gi|359324034|ref|XP_003640270.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 1
[Canis lupus familiaris]
Length = 466
Score = 41.2 bits (95), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V I + + G+ + +R SGA++ +++P G+ + V+ ++GT DQ++ A
Sbjct: 389 TTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAP 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|405122865|gb|AFR97631.1| cytoplasmic protein [Cryptococcus neoformans var. grubii H99]
Length = 357
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ S + I++ SGA + ++ PG+TE V+ VSG +D +
Sbjct: 162 AVTIKFIIPNSRMGSVIGKGGSKIKEIQEASGARLNASEAMLPGSTERVLSVSGVADAVH 221
Query: 303 AAQSLIHAFIL 313
A I +L
Sbjct: 222 IAVYYIGTILL 232
>gi|359324036|ref|XP_003640271.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K isoform 2
[Canis lupus familiaris]
Length = 464
Score = 41.2 bits (95), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V I + + G+ + +R SGA++ +++P G+ + V+ ++GT DQ++ A
Sbjct: 389 TTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKIDEPLEGSEDRVITITGTQDQIQNAP 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
>gi|156372967|ref|XP_001629306.1| predicted protein [Nematostella vectensis]
gi|156216303|gb|EDO37243.1| predicted protein [Nematostella vectensis]
Length = 419
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 40/78 (51%)
Query: 235 SGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMV 294
SG + A T+ +V IP+ + G+ + IR A + ++DP PG+ + ++ +
Sbjct: 334 SGGNTAGGDQTSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLPGSNDRIITI 393
Query: 295 SGTSDQMRAAQSLIHAFI 312
+G +Q+ AQ L+ +
Sbjct: 394 TGNQEQINHAQYLLQQSV 411
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 6 AQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 65
A D + V +I E+ + G + ++LV Q+G ++GR G+ + E+R +GA+++VF
Sbjct: 107 ALDILAEVVPKIGEVQY--GHEI--QMLVQRSQVGSIIGRAGYKIKEIREGSGANVKVFA 162
>gi|223947189|gb|ACN27678.1| unknown [Zea mays]
gi|223950255|gb|ACN29211.1| unknown [Zea mays]
gi|414868821|tpg|DAA47378.1| TPA: KH domain containing protein [Zea mays]
Length = 508
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A + T + +P Y V G +++S+IR+ SGA + + + PG E V ++G
Sbjct: 374 NQAHGSSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPG--EMTVEITG 431
Query: 297 TSDQMRAAQSLIHAFI 312
++ Q++ AQ LI F+
Sbjct: 432 SASQVQTAQQLIKNFM 447
>gi|385305943|gb|EIF49885.1| kh domain rna binding protein [Dekkera bruxellensis AWRI1499]
Length = 541
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
+ V + IG ++GRGG + ++R+ TG +++ D+ P GS ++ + N + +Q+
Sbjct: 449 IFVPQKHIGLIIGRGGRNLKDIRQQTGCYVKI--NDEVP--GSTERKLTLMSNNMYGIQN 504
Query: 92 ALFHITSRLRETIFPMKR 109
AL I +++ +R
Sbjct: 505 ALLLINNKIENEKMREQR 522
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATE-GVVMVSGTSDQMRAAQS 306
++ +PQ ++ + G NL IRQ +G V +ND PG+TE + ++S ++ A
Sbjct: 448 DIFVPQKHIGLIIGRGGRNLKDIRQQTGCYVKINDEVPGSTERKLTLMSNNMYGIQNALL 507
Query: 307 LIHAFI 312
LI+ I
Sbjct: 508 LINNKI 513
>gi|344276217|ref|XP_003409905.1| PREDICTED: poly(rC)-binding protein 4-like [Loxodonta africana]
Length = 362
Score = 41.2 bits (95), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 204 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 263
Query: 308 IHAFI 312
I A +
Sbjct: 264 ITACL 268
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 193 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 247
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 248 VTITGSPVSIALAQYLITACLE 269
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 62 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 121
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 122 VRQICAVIL 130
>gi|26346528|dbj|BAC36915.1| unnamed protein product [Mus musculus]
Length = 403
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|355709449|gb|AES03595.1| poly binding protein 3 [Mustela putorius furo]
Length = 92
Score = 41.2 bits (95), Expect = 0.61, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 1 MRHSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS 60
+RH P R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA
Sbjct: 18 LRHYPQLHIGRRMESKVSEGGLN--VTLTIRLLMHGKEVGSIIGKKGETVKKMREESGAR 75
Query: 61 IRV 63
I +
Sbjct: 76 INI 78
>gi|351698877|gb|EHB01796.1| Poly(rC)-binding protein 4 [Heterocephalus glaber]
Length = 443
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 285 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 344
Query: 308 IHAFI 312
I A +
Sbjct: 345 ITACL 349
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEP-GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 274 GLDPSAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 328
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 329 VTITGSPVSIALAQYLITACLE 350
>gi|227497228|ref|NP_067542.3| poly(rC)-binding protein 4 [Mus musculus]
gi|14715061|gb|AAH10694.1| Poly(rC) binding protein 4 [Mus musculus]
Length = 403
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|12230430|sp|P57724.1|PCBP4_MOUSE RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|9957163|gb|AAG09239.1|AF176328_1 alphaCP-4 [Mus musculus]
Length = 403
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|300798415|ref|NP_001178812.1| poly(rC)-binding protein 4 [Rattus norvegicus]
Length = 403
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|115497150|ref|NP_001068751.1| poly(rC)-binding protein 4 [Bos taurus]
gi|119390858|sp|Q0VCU0.1|PCBP4_BOVIN RecName: Full=Poly(rC)-binding protein 4; AltName: Full=Alpha-CP4
gi|111304931|gb|AAI20010.1| Poly(rC) binding protein 4 [Bos taurus]
gi|296474781|tpg|DAA16896.1| TPA: poly(rC)-binding protein 4 [Bos taurus]
Length = 403
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
>gi|354476373|ref|XP_003500399.1| PREDICTED: poly(rC)-binding protein 4 [Cricetulus griseus]
gi|344252773|gb|EGW08877.1| Poly(rC)-binding protein 4 [Cricetulus griseus]
Length = 403
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|12837891|dbj|BAB23990.1| unnamed protein product [Mus musculus]
Length = 403
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
>gi|218193355|gb|EEC75782.1| hypothetical protein OsI_12699 [Oryza sativa Indica Group]
Length = 510
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 235 SGNH--AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
SGN + + + T + IP Y V G +++S+IR+ SGA V + + + E V
Sbjct: 370 SGNQPPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTV 429
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+ G++ Q++ AQ L+ F+
Sbjct: 430 EIIGSASQVQTAQQLVQNFM 449
>gi|16924113|gb|AAL31692.1|AC092390_13 putative RNA binding protein [Oryza sativa Japonica Group]
gi|108709929|gb|ABF97724.1| KH domain containing protein, expressed [Oryza sativa Japonica
Group]
gi|215695360|dbj|BAG90551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625405|gb|EEE59537.1| hypothetical protein OsJ_11804 [Oryza sativa Japonica Group]
Length = 510
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 235 SGNH--AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
SGN + + + T + IP Y V G +++S+IR+ SGA V + + + E V
Sbjct: 370 SGNQPPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTV 429
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+ G++ Q++ AQ L+ F+
Sbjct: 430 EIIGSASQVQTAQQLVQNFM 449
>gi|406608142|emb|CCH40576.1| Poly(rC)-binding protein 2 [Wickerhamomyces ciferrii]
Length = 457
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T E+ IP Y+ +V G++ N+ I+ SG+ + + DP P + E + + GTS + A
Sbjct: 359 TQEIFIPNEYVGNVIGKSGKNIKLIKDTSGSKIQIADPNPESKERKITLVGTSAGNQTAI 418
Query: 306 SLIHAFI 312
LI+ I
Sbjct: 419 FLINNRI 425
>gi|225707620|gb|ACO09656.1| PolyrC-binding protein 2 [Osmerus mordax]
Length = 318
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 225 GFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK 284
GFT + ++ +H E+ IP + + G S ++ IRQ+SGA + + +P
Sbjct: 230 GFTGMDASAQTSSH---------EMTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIANPV 280
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIHA 310
G+ + V ++G+ + A+ LI+A
Sbjct: 281 DGSADRQVTITGSPASISLAEYLINA 306
>gi|297601352|ref|NP_001050707.2| Os03g0627500 [Oryza sativa Japonica Group]
gi|255674723|dbj|BAF12621.2| Os03g0627500, partial [Oryza sativa Japonica Group]
Length = 512
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 235 SGNH--AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVV 292
SGN + + + T + IP Y V G +++S+IR+ SGA V + + + E V
Sbjct: 372 SGNQPPSHVASQVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTV 431
Query: 293 MVSGTSDQMRAAQSLIHAFI 312
+ G++ Q++ AQ L+ F+
Sbjct: 432 EIIGSASQVQTAQQLVQNFM 451
>gi|226494805|ref|NP_001148654.1| KH domain containing protein [Zea mays]
gi|195621126|gb|ACG32393.1| KH domain containing protein [Zea mays]
Length = 529
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A + T + +P Y V G +++S+IR+ SGA + + + PG E V ++G
Sbjct: 374 NQAHGSSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPG--EMTVEITG 431
Query: 297 TSDQMRAAQSLIHAFI 312
++ Q++ AQ LI F+
Sbjct: 432 SASQVQTAQQLIKNFM 447
>gi|326505208|dbj|BAK02991.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 513
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 1/79 (1%)
Query: 235 SGNHAAILTSTTI-EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVM 293
SGN + ++ + + IP Y V G +++S+IR+ SGA V + + + E V
Sbjct: 374 SGNQPPLHVASQVHNMQIPLSYADAVIGAAGASISYIRRQSGAAVTIQESRGAPGEMTVE 433
Query: 294 VSGTSDQMRAAQSLIHAFI 312
+ G++ Q++ AQ LI F+
Sbjct: 434 IIGSASQVQTAQQLIQNFM 452
>gi|444319418|ref|XP_004180366.1| hypothetical protein TBLA_0D03470 [Tetrapisispora blattae CBS 6284]
gi|387513408|emb|CCH60847.1| hypothetical protein TBLA_0D03470 [Tetrapisispora blattae CBS 6284]
Length = 759
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 13/87 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ LL+ +GC++GRGG+ + E+ +GA R+F Q + + +D ++ + GN
Sbjct: 199 LTLHLLIPHHLVGCIIGRGGNHLREIESFSGA--RLFASPQ--QLVASNDRLLSITGNSG 254
Query: 88 SVQDALFHITSRL---------RETIF 105
S++ A +HI L R T+F
Sbjct: 255 SIKIATYHIAESLLNANNQLKNRNTVF 281
>gi|343427422|emb|CBQ70949.1| related to PBP2-PAB1 binding protein [Sporisorium reilianum SRZ2]
Length = 416
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
S TI ++P M V G+ S + I++ SGA + + PG+TE V+ +SG +D +
Sbjct: 195 SVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISGVADAVH 254
Query: 303 AAQSLIHAFIL 313
A + +L
Sbjct: 255 IAVYYVGTILL 265
>gi|219886695|gb|ACL53722.1| unknown [Zea mays]
Length = 702
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++G ++G+GG + M+ +GA I++ P+ P + + IV+V GN ++
Sbjct: 241 EMTVPDNKVGLIIGKGGETIKGMQTKSGARIQLIPQ-HPPEGVTLTERIVRVTGNKKQIE 299
Query: 91 DALFHITSRLRETI 104
A I + +T
Sbjct: 300 AAKDLIKQAMNQTF 313
>gi|357437527|ref|XP_003589039.1| Far upstream element-binding protein [Medicago truncatula]
gi|355478087|gb|AES59290.1| Far upstream element-binding protein [Medicago truncatula]
Length = 605
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 66/161 (40%), Gaps = 25/161 (15%)
Query: 8 DAVMRVHSRIAEIGFEP---GQAVVAR------------LLVHSQQIGCLLGRGGHIVSE 52
DA+ I E+ E G +V R + + + ++G ++G+GG +
Sbjct: 169 DAIATAEKLIKEVLAEAESGGNGLVTRRMTGQGGADEFSMKIPNNKVGLIIGKGGETIKS 228
Query: 53 MRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ------DALFHITSRLRETIFP 106
M+ TGA I+V P P S + +++ G ++ D++ +RLR
Sbjct: 229 MQATTGARIQVIPLHLPPGDTS-TERTLKIEGTSEQIESAKQLVDSILSGENRLRNPS-- 285
Query: 107 MKRPGPNNGHSYLPPFPEMPPPPF-RPRHNPASPGSYPSPV 146
M G+ PP PP +P + A PG+YP P
Sbjct: 286 MSGGYSQQGYQARPPSSWAPPAASQQPGYGYAQPGAYPGPT 326
>gi|226529800|ref|NP_001141507.1| uncharacterized protein LOC100273619 [Zea mays]
gi|194704864|gb|ACF86516.1| unknown [Zea mays]
gi|223950149|gb|ACN29158.1| unknown [Zea mays]
gi|413941634|gb|AFW74283.1| hypothetical protein ZEAMMB73_757154 [Zea mays]
Length = 702
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++G ++G+GG + M+ +GA I++ P+ P + + IV+V GN ++
Sbjct: 241 EMTVPDNKVGLIIGKGGETIKGMQTKSGARIQLIPQ-HPPEGVTLTERIVRVTGNKKQIE 299
Query: 91 DALFHITSRLRETI 104
A I + +T
Sbjct: 300 AAKDLIKQAMNQTF 313
>gi|226506792|ref|NP_001146241.1| uncharacterized protein LOC100279814 [Zea mays]
gi|219886335|gb|ACL53542.1| unknown [Zea mays]
gi|413926084|gb|AFW66016.1| hypothetical protein ZEAMMB73_777138 [Zea mays]
Length = 692
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 58/126 (46%), Gaps = 7/126 (5%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+PG A ++ + + ++G ++G+GG + M+ +GA I+V P P + + V +
Sbjct: 230 QPG-AETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPL-HLPAGDTSTERTVHI 287
Query: 83 IGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEM---PP--PPFRPRHNPA 137
G ++ A I+ E G + Y PP P+ PP PP +P +
Sbjct: 288 DGTQEQIEAAKQLISEVTSENRARNPMSGGYSQQGYRPPRPQSNWGPPSVPPQQPGYGYM 347
Query: 138 SPGSYP 143
PG+YP
Sbjct: 348 QPGAYP 353
>gi|348581993|ref|XP_003476761.1| PREDICTED: poly(rC)-binding protein 4 isoform 1 [Cavia porcellus]
Length = 403
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E + ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHITITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPAAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
+ + G+ S+ A + IT+ L
Sbjct: 289 ITITGSPVSIALAQYLITACLE 310
>gi|294460497|gb|ADE75825.1| unknown [Picea sitchensis]
Length = 113
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
IP Y V G +N+ ++R+ SGA + + + + +E V + GT+ Q++ AQ LI
Sbjct: 3 IPLSYADDVIGVEGTNIGYMRRASGATITIQETRGVPSEITVEIKGTNTQVQTAQHLIQN 62
Query: 311 FILCG 315
F+ G
Sbjct: 63 FMAGG 67
>gi|223947067|gb|ACN27617.1| unknown [Zea mays]
gi|413926085|gb|AFW66017.1| hypothetical protein ZEAMMB73_777138 [Zea mays]
Length = 704
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 19/138 (13%)
Query: 23 EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82
+PG A ++ + + ++G ++G+GG + M+ +GA I+V P P + + V +
Sbjct: 230 QPG-AETFQMKIANNKVGLIIGKGGETIKSMQANSGARIQVIPL-HLPAGDTSTERTVHI 287
Query: 83 IGNYHSVQDA---LFHITSRL--RETIFPMKRPGPNN----GHS---YLPPFPEM---PP 127
G ++ A + +TS L R +P ++ N G+S Y PP P+ PP
Sbjct: 288 DGTQEQIEAAKQLISEVTSELARRTANYPGEQNRARNPMSGGYSQQGYRPPRPQSNWGPP 347
Query: 128 --PPFRPRHNPASPGSYP 143
PP +P + PG+YP
Sbjct: 348 SVPPQQPGYGYMQPGAYP 365
>gi|356514579|ref|XP_003525983.1| PREDICTED: uncharacterized protein LOC100797476 [Glycine max]
Length = 554
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 12/136 (8%)
Query: 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQD 91
+ + + ++G ++G+GG + M+ +TGA I+V P P S + +++ G ++
Sbjct: 180 MKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTS-TERTLKIDGTPEQIES 238
Query: 92 A---LFHITSRLRETIFPMKRPG-PNNGHSYLPPFPEMPPPPF-RPRHNPASPGSYPSPV 146
A ++ + S P G P G+ PP PP P +P + PG+Y P
Sbjct: 239 AKQLVYQVISGENRVRNPAMSGGYPQQGYQSRPPSNWAPPAPTQQPGYGYVQPGAYSGPS 298
Query: 147 GPFHSMDRGMGPSQPF 162
P ++M P QP+
Sbjct: 299 -PQYNM-----PQQPY 308
>gi|320165866|gb|EFW42765.1| hypothetical protein CAOG_07897 [Capsaspora owczarzaki ATCC 30864]
Length = 556
Score = 40.4 bits (93), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN-DPKPGATEGVVMVSGTSDQMRA 303
T I+V +P V G++ N+ ++ Q +GA + +N D P A E VSG + + A
Sbjct: 409 TNIQVAVPARITGLVIGKSGENVKYMEQATGARIQLNKDAPPNAVEKFFNVSGEAAAVEA 468
Query: 304 AQSLIHAFI 312
AQ+++ I
Sbjct: 469 AQNMLRERI 477
>gi|430814085|emb|CCJ28637.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 207
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Query: 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVF-PKDQAPRCGSPHDEIVQV 82
PGQ + ++ + + +G ++G+GG ++E+R+ +G+ I++ P D + + +V +
Sbjct: 129 PGQPITQQIFIPNDMVGAIIGKGGTKINEIRQLSGSHIKINEPADNSA------ERLVTI 182
Query: 83 IGNYHSVQDALFHITSRLR 101
G Q AL+ + SRL
Sbjct: 183 TGTPECNQMALYMLYSRLE 201
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 40/65 (61%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T ++ IP + + G+ + ++ IRQ+SG+++ +N+P + E +V ++GT + + A
Sbjct: 134 TQQIFIPNDMVGAIIGKGGTKINEIRQLSGSHIKINEPADNSAERLVTITGTPECNQMAL 193
Query: 306 SLIHA 310
++++
Sbjct: 194 YMLYS 198
>gi|388854780|emb|CCF51673.1| related to PBP2-PAB1 binding protein [Ustilago hordei]
Length = 446
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
S TI ++P M V G+ S + I++ SGA + + PG+TE V+ +SG +D +
Sbjct: 222 SVTIRFIVPNSRMGSVIGKQGSKIKEIQEASGARLTAGEAMLPGSTERVLSISGVADAVH 281
Query: 303 AAQSLIHAFIL 313
A + +L
Sbjct: 282 IAVYYVGTILL 292
>gi|71019141|ref|XP_759801.1| hypothetical protein UM03654.1 [Ustilago maydis 521]
gi|46099599|gb|EAK84832.1| hypothetical protein UM03654.1 [Ustilago maydis 521]
Length = 442
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 6/90 (6%)
Query: 228 PRNRPVESGNH--AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK- 284
P N PV++ A +T++ ++I M V G + HI+ +SGA +V +
Sbjct: 123 PLNAPVQADGSPAEAAAQTTSVRLLISHNLMGTVIGRQGLKIKHIQDLSGARMVASKEML 182
Query: 285 PGATEGVVMVSGTSDQMRAAQSLIHAFILC 314
P +TE VV V G+ D +R A IH C
Sbjct: 183 PQSTERVVEVQGSVDAIRVA---IHEIAKC 209
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 22 FEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASI---RVFPKDQAPRCGSPHDE 78
+P + R LV +++ G ++G+GG V+E+R TG +V P HD
Sbjct: 46 IDPNATLQLRALVSTKEAGIIIGKGGANVAELREQTGVKAGVSKVVP--------GVHDR 97
Query: 79 IVQVIGNYHSVQDALFHITSRLRE 102
++ V G + DA I + E
Sbjct: 98 VLSVTGTLVGISDAFALIAKTILE 121
>gi|118792630|ref|XP_320427.3| AGAP012103-PA [Anopheles gambiae str. PEST]
gi|116116989|gb|EAA00333.3| AGAP012103-PA [Anopheles gambiae str. PEST]
Length = 494
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 13 VHSRIAEIGFEPGQ---AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQA 69
+ ++ E GF G + + V S Q+G ++G+GG V E++R TG+ I+ P+ A
Sbjct: 350 IFEKMREEGFVSGTDDVRLTVEIFVPSAQVGRIIGKGGQNVRELQRVTGSIIK-LPEHTA 408
Query: 70 PRCGSPHDE--IVQVIGNYHSVQDALFHITSRLRET 103
+P DE V +IG + SVQ A I + + T
Sbjct: 409 S---APVDEETTVHIIGPFFSVQSAQRRIRTMMLAT 441
>gi|72013105|ref|XP_781909.1| PREDICTED: heterogeneous nuclear ribonucleoprotein K-like
[Strongylocentrotus purpuratus]
Length = 447
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
R++VH G ++GR G + E+R TGA +V+ + C D +VQ+ G+ +
Sbjct: 117 RIMVHQSHAGAIIGRAGFKIKELREKTGAHFKVYTE----TCPKSTDRVVQLTGSPDVIA 172
Query: 91 DALFHITSRLRET 103
A + ET
Sbjct: 173 KAAREVYEICTET 185
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
+V IP + G + IR SGA + ++DP GA + ++ ++GT + A+ L
Sbjct: 372 QVTIPNDLAGSIIGRGGQRIKRIRMQSGAQIKIDDPLSGAKDRIITITGTQHDIAHAKFL 431
Query: 308 IH 309
+
Sbjct: 432 LQ 433
>gi|145336377|ref|NP_174629.3| far upstream element-binding protein [Arabidopsis thaliana]
gi|110739541|dbj|BAF01679.1| putative single-strand nucleic acid-binding protein [Arabidopsis
thaliana]
gi|110739658|dbj|BAF01737.1| putative single-strand nucleic acid-binding protein [Arabidopsis
thaliana]
gi|110739944|dbj|BAF01877.1| putative single-strand nucleic acid-binding protein [Arabidopsis
thaliana]
gi|332193492|gb|AEE31613.1| far upstream element-binding protein [Arabidopsis thaliana]
Length = 763
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 63/132 (47%), Gaps = 18/132 (13%)
Query: 7 QDAVMRVHSRIAEIGFEPGQAVVAR-------LLVHSQQIGCLLGRGGHIVSEMRRATGA 59
+ A +++ IAE+ A+ AR + V S ++G ++GRGG + M+ + A
Sbjct: 292 EKAEKLINAVIAEVEAGGVPALAARGVPEQMEIKVPSDKVGVIIGRGGETIKNMQTKSRA 351
Query: 60 SIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG---- 115
I++ P+++ + V++ G+ + A T+ +++ ++ RP P +G
Sbjct: 352 RIQLIPQNEGDAS---KERTVRISGDKRQIDIA----TALIKDVMYQDGRPSPYSGGFNQ 404
Query: 116 HSYLPPFPEMPP 127
+Y P P PP
Sbjct: 405 QAYQPRGPGGPP 416
>gi|413921493|gb|AFW61425.1| hypothetical protein ZEAMMB73_181287 [Zea mays]
Length = 699
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVAR-------------LLVHSQQIGCLLGRGGHIVSEMRR 55
A + + S IAE A++AR + V ++G ++G+GG + M+
Sbjct: 209 AELLIKSVIAEAEAGGSPALIARGFGSGQPGSEQFEMTVPDNKVGLIIGKGGDAIKGMQT 268
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+GA I++ P+ P + + IV+V GN ++ A I + +T
Sbjct: 269 KSGARIQLIPQ-HPPEGVTLTERIVRVTGNKKQIELAKDLIKQAMNQTF 316
>gi|223947885|gb|ACN28026.1| unknown [Zea mays]
gi|224031081|gb|ACN34616.1| unknown [Zea mays]
gi|413921492|gb|AFW61424.1| hypothetical protein ZEAMMB73_181287 [Zea mays]
Length = 706
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 9 AVMRVHSRIAEIGFEPGQAVVAR-------------LLVHSQQIGCLLGRGGHIVSEMRR 55
A + + S IAE A++AR + V ++G ++G+GG + M+
Sbjct: 216 AELLIKSVIAEAEAGGSPALIARGFGSGQPGSEQFEMTVPDNKVGLIIGKGGDAIKGMQT 275
Query: 56 ATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104
+GA I++ P+ P + + IV+V GN ++ A I + +T
Sbjct: 276 KSGARIQLIPQ-HPPEGVTLTERIVRVTGNKKQIELAKDLIKQAMNQTF 323
>gi|15225229|ref|NP_180167.1| upstream element-binding protein [Arabidopsis thaliana]
gi|19310435|gb|AAL84954.1| F17H15.1/F17H15.1 [Arabidopsis thaliana]
gi|20197266|gb|AAM15002.1| unknown protein [Arabidopsis thaliana]
gi|20197368|gb|AAM15045.1| unknown protein [Arabidopsis thaliana]
gi|110741998|dbj|BAE98938.1| hypothetical protein [Arabidopsis thaliana]
gi|330252684|gb|AEC07778.1| upstream element-binding protein [Arabidopsis thaliana]
Length = 632
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 14/104 (13%)
Query: 215 GDPRGFDAS-------SGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267
GD +GF + SG P + PV G+ TT ++ IP + + + G+ +
Sbjct: 101 GDNKGFSSYPSEGKQMSGTVPSSIPVSYGS----FQGTTKKIDIPNMRVGVIIGKGGETI 156
Query: 268 SHIRQISGANVVVN---DPKPGATEGVVMVSGTSDQMRAAQSLI 308
+++ SGA + V D P V ++GT DQ+ A+ LI
Sbjct: 157 KYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPDQISKAEQLI 200
>gi|443926268|gb|ELU44971.1| cytoplasmic protein [Rhizoctonia solani AG-1 IA]
Length = 389
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 41/68 (60%), Gaps = 7/68 (10%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVF-PKDQAP---RCGSPHDEIVQVIGNYHSVQDA-- 92
+GC++G+GG ++E+R + + IR+ P Q P G+P++ +V + G ++Q A
Sbjct: 286 VGCIIGKGGSKINEIRSLSASQIRIMEPGVQGPPGTAQGNPNERLVIITGQPQNIQMAVN 345
Query: 93 -LFHITSR 99
L+H++ R
Sbjct: 346 LLYHVSFR 353
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G S + I+ SGA + ++ PG+TE ++ VSG +D +
Sbjct: 151 AVTIKFIIPHSRMGSVIGRGGSKIKEIQDASGAKLNASEGMLPGSTERILSVSGVADAIH 210
Query: 303 AAQSLIHAFIL 313
A + ++
Sbjct: 211 IATYYVGNILI 221
>gi|401880798|gb|EJT45110.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 2479]
Length = 793
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G S + I+ SGA + ++ PG+TE ++ VSG +D +
Sbjct: 170 AVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNASEVMLPGSTERILSVSGVADAIH 229
Query: 303 AAQSLIHAFIL 313
A I +L
Sbjct: 230 IAVYYIGTILL 240
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 10 VMRVHSRIAEIGFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V R++ ++ PG +AV + ++ + ++G ++GRGG + E++ A+GA + +
Sbjct: 152 VRRINDEPFDVASVPGSRAVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNA---SE 208
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
GS + I+ V G ++ A+++I + L E + + PGP++G
Sbjct: 209 VMLPGS-TERILSVSGVADAIHIAVYYIGTILLE--YQERNPGPHSG 252
>gi|406697218|gb|EKD00483.1| telomere length regulating RNA binding protein, Pbp2p [Trichosporon
asahii var. asahii CBS 8904]
Length = 793
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G S + I+ SGA + ++ PG+TE ++ VSG +D +
Sbjct: 170 AVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNASEVMLPGSTERILSVSGVADAIH 229
Query: 303 AAQSLIHAFIL 313
A I +L
Sbjct: 230 IAVYYIGTILL 240
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 59/107 (55%), Gaps = 7/107 (6%)
Query: 10 VMRVHSRIAEIGFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQ 68
V R++ ++ PG +AV + ++ + ++G ++GRGG + E++ A+GA + +
Sbjct: 152 VRRINDEPFDVASVPGSRAVTIKFIIPNSRMGSVIGRGGSKIKEIQDASGARLNA---SE 208
Query: 69 APRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNG 115
GS + I+ V G ++ A+++I + L E + + PGP++G
Sbjct: 209 VMLPGS-TERILSVSGVADAIHIAVYYIGTILLE--YQERNPGPHSG 252
>gi|125559909|gb|EAZ05357.1| hypothetical protein OsI_27561 [Oryza sativa Indica Group]
gi|125601956|gb|EAZ41281.1| hypothetical protein OsJ_25788 [Oryza sativa Japonica Group]
Length = 700
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 21 GFEPGQAVVAR--LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
GF GQ+ + +LV ++G ++G+GG + ++ +GA I++ P+ P + +
Sbjct: 237 GFGSGQSGSEQFEMLVPDNKVGLIIGKGGETIKTLQTRSGARIQLIPQ-HPPEGVTLTER 295
Query: 79 IVQVIGNYHSVQDALFHITSRLRETI 104
V++ GN ++ A I + +T
Sbjct: 296 TVRITGNKKQIEAAKDMIKQAMSQTF 321
>gi|224145055|ref|XP_002325510.1| predicted protein [Populus trichocarpa]
gi|222862385|gb|EEE99891.1| predicted protein [Populus trichocarpa]
Length = 581
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++++G ++GRGG + ++ +GA I++ P+ P + V+V G+ V+
Sbjct: 94 EIPVPNEKVGLIIGRGGETIKGLQAKSGARIQLIPQ-HLPEGDGSKERTVRVTGDKRQVE 152
Query: 91 DALFHITSRLRETIFP 106
A I + +T+ P
Sbjct: 153 MAREMIMDVMNQTVRP 168
>gi|332856422|ref|XP_524310.3| PREDICTED: RNA-binding protein Nova-2 [Pan troglodytes]
Length = 607
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRA 303
++V+IP + G+ + +++ +GA + ++ K PG TE V +V GT++ + A
Sbjct: 150 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 209
Query: 304 AQSLIHAFI 312
+H+FI
Sbjct: 210 ----VHSFI 214
>gi|426199945|gb|EKV49869.1| hypothetical protein AGABI2DRAFT_63586 [Agaricus bisporus var.
bisporus H97]
Length = 365
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ S + I+ SGA + ++ PG+TE V+ V+G +D +
Sbjct: 146 AVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKLNASEGMLPGSTERVLSVAGVADAIH 205
Query: 303 AAQSLIHAFIL 313
A I ++
Sbjct: 206 IATYYIGTILI 216
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+AV + ++ + ++G ++G+GG + E++ A+GA + + GS + ++ V G
Sbjct: 145 RAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKLNA---SEGMLPGST-ERVLSVAGV 200
Query: 86 YHSVQDALFHITSRLRETIFPM--------------KRPGPNNGHSYLPPFPEMPPPPFR 131
++ A ++I + L E M +RP G SY+P + P+
Sbjct: 201 ADAIHIATYYIGTILIEAQERMPSTSNSTYRPSSQPRRPTQGGGSSYVPGYSHH--APYG 258
Query: 132 PRHNP 136
P HNP
Sbjct: 259 PPHNP 263
>gi|409082121|gb|EKM82479.1| hypothetical protein AGABI1DRAFT_33710 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 365
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ S + I+ SGA + ++ PG+TE V+ V+G +D +
Sbjct: 146 AVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKLNASEGMLPGSTERVLSVAGVADAIH 205
Query: 303 AAQSLIHAFIL 313
A I ++
Sbjct: 206 IATYYIGTILI 216
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 58/125 (46%), Gaps = 20/125 (16%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+AV + ++ + ++G ++G+GG + E++ A+GA + + GS + ++ V G
Sbjct: 145 RAVTIKFMIPNSRMGSVIGKGGSKIKEIQDASGAKLNA---SEGMLPGST-ERVLSVAGV 200
Query: 86 YHSVQDALFHITSRLRETIFPM--------------KRPGPNNGHSYLPPFPEMPPPPFR 131
++ A ++I + L E M +RP G SY+P + P+
Sbjct: 201 ADAIHIATYYIGTILIEAQERMPSTSNSTYRPSSQPRRPTQGGGSSYVPGYSHH--APYG 258
Query: 132 PRHNP 136
P HNP
Sbjct: 259 PPHNP 263
>gi|414868822|tpg|DAA47379.1| TPA: hypothetical protein ZEAMMB73_380288 [Zea mays]
Length = 499
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A + T + +P Y V G +++S+IR+ SGA + + + PG E V ++G
Sbjct: 374 NQAHGSSQVTHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGAPG--EMTVEITG 431
Query: 297 TSDQMRAAQSLI 308
++ Q++ AQ LI
Sbjct: 432 SASQVQTAQQLI 443
>gi|358055492|dbj|GAA98612.1| hypothetical protein E5Q_05299 [Mixia osmundae IAM 14324]
Length = 549
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 8/119 (6%)
Query: 198 FDRPPSP-RSWTPQGVGGGDPRGF---DASSGFTPRNRPVESGNHAAILTSTTIEVVIPQ 253
D PP+P + +P +G DP G S +P P +G+ AAI T+ V +
Sbjct: 133 IDAPPAPVAASSPGELGTSDPAGIRNGTDSGALSPPPPPSATGSGAAIATAANPHVTLRA 192
Query: 254 LYMAH----VYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLI 308
L + + G+ ++ IR+ +G V+V++ P E ++ VSG D + A LI
Sbjct: 193 LIVTQDASIIIGKGGQSIKEIREKAGVKVLVSESIPNNPERILNVSGLLDGVSKAFGLI 251
>gi|242084058|ref|XP_002442454.1| hypothetical protein SORBIDRAFT_08g020260 [Sorghum bicolor]
gi|241943147|gb|EES16292.1| hypothetical protein SORBIDRAFT_08g020260 [Sorghum bicolor]
Length = 352
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 237 NHAAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG 296
N A + T + +P Y V G +++S+IR+ SGA + + + PG E V ++G
Sbjct: 229 NQAHGSSQVTHSMQVPLSYADAVIGSAGASISYIRRHSGATISIQEGAPG--EMTVEITG 286
Query: 297 TSDQMRAAQSLI 308
++ Q++ AQ LI
Sbjct: 287 SASQVQTAQQLI 298
>gi|348668189|gb|EGZ08013.1| hypothetical protein PHYSODRAFT_339892 [Phytophthora sojae]
Length = 644
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIV 80
G P LLV ++++G ++GRGG + +++ TG S+ + Q P P ++
Sbjct: 286 GINPDGTDSVELLVPNERVGLIIGRGGCTIKAIQQRTGTSVTIP---QTPDPNHPDMRLI 342
Query: 81 QVIGNYHSVQDALFHITSRLRE 102
+ G + + A F I S + E
Sbjct: 343 TIRGTMEAKEAAKFEIHSMINE 364
>gi|326510613|dbj|BAJ87523.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528939|dbj|BAJ97491.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 360
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 14/125 (11%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
RL+V + G ++G+GG + + A I++ P+D HD +V + G +S
Sbjct: 136 RLVVPNSSCGGIIGKGGATIKSFIEDSHAGIKISPQDN--NFVGLHDRLVTITGPLNSQM 193
Query: 91 DALFHITSRLRETI-FP--MKRPGPNNGHSYLPPFPE-------MPPPPFRPRHNPASPG 140
A+ I S+L E + +P + P P G + P +P +PP P+ N P
Sbjct: 194 RAIHLILSKLSEDVHYPPNLSSPFPYAGLGF-PSYPAAVPVGYMIPPVPYNNTVN-YGPN 251
Query: 141 SYPSP 145
Y +P
Sbjct: 252 GYAAP 256
>gi|195643386|gb|ACG41161.1| zinc finger C-x8-C-x5-C-x3-H type family protein [Zea mays]
Length = 301
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ + + G+ +N HI +++GA + + D + + + GT DQ++
Sbjct: 169 SATAKISVDASLAGAIIGKGGTNTKHISRVTGAKLAIRDNEADPNHKNIELEGTFDQIKH 228
Query: 304 AQSLIHAFIL 313
A +++ I+
Sbjct: 229 ASAMVTELIV 238
>gi|212275666|ref|NP_001130889.1| uncharacterized protein LOC100191993 [Zea mays]
gi|194690374|gb|ACF79271.1| unknown [Zea mays]
gi|238008302|gb|ACR35186.1| unknown [Zea mays]
gi|408690356|gb|AFU81638.1| C3H-type transcription factor, partial [Zea mays subsp. mays]
gi|413943639|gb|AFW76288.1| zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1 [Zea
mays]
gi|413943640|gb|AFW76289.1| zinc finger C-x8-C-x5-C-x3-H type family protein isoform 2 [Zea
mays]
Length = 301
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ + + G+ +N HI +++GA + + D + + + GT DQ++
Sbjct: 169 SATAKISVDASLAGAIIGKGGTNTKHISRVTGAKLAIRDNEADPNHKNIELEGTFDQIKH 228
Query: 304 AQSLIHAFIL 313
A +++ I+
Sbjct: 229 ASAMVTELIV 238
>gi|392558575|gb|EIW51762.1| hypothetical protein TRAVEDRAFT_156921 [Trametes versicolor
FP-101664 SS1]
Length = 378
Score = 37.7 bits (86), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMR 302
+ TI+ +IP M V G+ + + I++ SGA + ++ PG+TE ++ VSG +D +
Sbjct: 145 AVTIKFMIPNSRMGSVIGKGGTKIKEIQEASGARLNASETMLPGSTERLLSVSGVADAIH 204
Query: 303 AAQSLIHAFIL 313
A I ++
Sbjct: 205 IATYYIGNILI 215
>gi|218187184|gb|EEC69611.1| hypothetical protein OsI_38985 [Oryza sativa Indica Group]
Length = 453
Score = 37.7 bits (86), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Query: 251 IPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+P Y V G +++S+IR+ SGA + + + PG E V +SG++ Q++ AQ LI
Sbjct: 331 VPLSYADAVIGAAGASISYIRRHSGATISIQEGVPG--EMTVEISGSASQVQTAQQLIKL 388
Query: 311 F 311
Sbjct: 389 L 389
>gi|357157425|ref|XP_003577794.1| PREDICTED: KH domain-containing protein At4g18375-like
[Brachypodium distachyon]
Length = 527
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+ T + +P Y V G +++S+IR+ SGA + + + PG E + ++G++ Q++
Sbjct: 399 SQITQTLQVPLSYADAVIGAAGASISYIRKHSGATISIQEGVPG--EMNLEMTGSASQVQ 456
Query: 303 AAQSLIHAFI 312
AQ LI F+
Sbjct: 457 TAQQLIKNFM 466
>gi|255569106|ref|XP_002525522.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223535201|gb|EEF36880.1| nucleic acid binding protein, putative [Ricinus communis]
Length = 798
Score = 37.4 bits (85), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V ++++G ++GRGG + ++ +GA I++ P+ P + + V+V G+ ++
Sbjct: 299 EMQVPNEKVGLIIGRGGDTIKALQAKSGARIQLIPQ-HPPEGDASKERTVRVTGDRKQIE 357
Query: 91 DALFHITSRLRETI--FPMKRPGPNNGHSYLPPFPEMP 126
A I + + + P+ G N SY P P P
Sbjct: 358 IAREMIKDVMSQNVRLSPLSG-GYNQQQSYRPRGPTGP 394
>gi|410924031|ref|XP_003975485.1| PREDICTED: uncharacterized protein LOC101068273 [Takifugu rubripes]
Length = 652
Score = 37.4 bits (85), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GR G ++ +++ TG I+ P D GS D I Q++G + Q A IT
Sbjct: 276 VGIVIGRNGEMIKKIQNDTGVRIQFKPDD-----GSTPDRIAQIMGPPNQAQHAADIITD 330
Query: 99 RLR 101
LR
Sbjct: 331 LLR 333
>gi|403417714|emb|CCM04414.1| predicted protein [Fibroporia radiculosa]
Length = 420
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 56/118 (47%), Gaps = 6/118 (5%)
Query: 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN 85
+AV + ++ + ++G ++G+GG + E++ A+GA + + GS + ++ V G
Sbjct: 201 RAVTIKFMIPNSRMGSVIGKGGAKIKEIQDASGARLNA---SEGMLPGST-ERVLSVSGV 256
Query: 86 YHSVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYP 143
++ A ++I + L E + P NN Y P PPP + P +YP
Sbjct: 257 ADAIHIATYYIGNILIEA--NERLPSYNNSSYYRPSSNSRRPPPNGSSYVPGYSNTYP 312
>gi|297813443|ref|XP_002874605.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
gi|297320442|gb|EFH50864.1| KH domain-containing protein [Arabidopsis lyrata subsp. lyrata]
Length = 730
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
+ V + ++G ++GRGG + +M+ +GA I++ P Q + V++ G+ +
Sbjct: 281 EIKVPNDKVGLIIGRGGETIKDMQTRSGARIQLIP--QHAEGDGLKERTVRISGDKMQID 338
Query: 91 DALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPP 127
A I + + P G N +Y P P PP
Sbjct: 339 IATDMIKDVMNQNARPSPYSGCYNQPAYRPRGPGGPP 375
>gi|413943642|gb|AFW76291.1| hypothetical protein ZEAMMB73_850778 [Zea mays]
Length = 234
Score = 37.4 bits (85), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/70 (21%), Positives = 35/70 (50%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
S T ++ + + G+ +N HI +++GA + + D + + + GT DQ++
Sbjct: 102 SATAKISVDASLAGAIIGKGGTNTKHISRVTGAKLAIRDNEADPNHKNIELEGTFDQIKH 161
Query: 304 AQSLIHAFIL 313
A +++ I+
Sbjct: 162 ASAMVTELIV 171
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,977,549,830
Number of Sequences: 23463169
Number of extensions: 303691126
Number of successful extensions: 1194330
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1086
Number of HSP's successfully gapped in prelim test: 6289
Number of HSP's that attempted gapping in prelim test: 1130963
Number of HSP's gapped (non-prelim): 45677
length of query: 318
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 176
effective length of database: 9,027,425,369
effective search space: 1588826864944
effective search space used: 1588826864944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 77 (34.3 bits)