BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021032
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P58223|Y4837_ARATH KH domain-containing protein At4g18375 OS=Arabidopsis thaliana
GN=At4g18375 PE=2 SV=1
Length = 606
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 11/103 (10%)
Query: 3 HSPAQDAVMRVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIR 62
S A +AV+ + I + E + V +LLV S+ IGC++G+ G +++E+R+ T A+I
Sbjct: 373 KSMAVEAVLLLQEYIND---EDAENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANIC 429
Query: 63 VFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
+ D++V+V G SV+DAL I RLRE +
Sbjct: 430 ISK--------GKKDDLVEVSGEVSSVRDALIQIVLRLREDVL 464
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 48/71 (67%)
Query: 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMR 302
+S+ +E++IP M+ V G+ NL +IR+ISGA + ++ K + + ++SGT +QMR
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593
Query: 303 AAQSLIHAFIL 313
A++L+ AF++
Sbjct: 594 CAENLVQAFVM 604
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 6 AQDAVMRVHSRIA--------EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT 57
AQDA+++V+ I + + RLLV Q L+G+ G + +RR T
Sbjct: 109 AQDALLKVYDAIVASDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRT 168
Query: 58 GASIRVFPKDQAP---RCGSPHDEIVQVIGNYHSVQDALFHITS 98
AS++V KD + C +D +V + G SV+ ALF +++
Sbjct: 169 RASVKVVSKDVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSA 212
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND--PKPGATEGVVMVSGTS--DQMRA 303
+V+ P + V G+ S + IR+ SG+ + VND K G E V++V+ T D M++
Sbjct: 315 KVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKS 374
Query: 304 ----AQSLIHAFI 312
A L+ +I
Sbjct: 375 MAVEAVLLLQEYI 387
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 16 RIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSP 75
RI+ + VV R+L +G ++G+ G +++ +R T A I+VF DQ C
Sbjct: 24 RISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVF--DQLHGCSQ- 80
Query: 76 HDEIVQVIGNYHSVQD 91
+VI Y SV++
Sbjct: 81 -----RVITIYCSVKE 91
>sp|O19048|PCBP1_RABIT Poly(rC)-binding protein 1 OS=Oryctolagus cuniculus GN=PCBP1 PE=2
SV=1
Length = 356
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS + V + G+ S+
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQ-VTITGSAASIS 337
Query: 91 DALFHITSRL 100
A + I +RL
Sbjct: 338 LAQYLINARL 347
>sp|P60335|PCBP1_MOUSE Poly(rC)-binding protein 1 OS=Mus musculus GN=Pcbp1 PE=1 SV=1
Length = 356
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS + V + G+ S+
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQ-VTITGSAASIS 337
Query: 91 DALFHITSRL 100
A + I +RL
Sbjct: 338 LAQYLINARL 347
>sp|Q15365|PCBP1_HUMAN Poly(rC)-binding protein 1 OS=Homo sapiens GN=PCBP1 PE=1 SV=2
Length = 356
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS + V + G+ S+
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQ-VTITGSAASIS 337
Query: 91 DALFHITSRL 100
A + I +RL
Sbjct: 338 LAQYLINARL 347
>sp|Q5E9A3|PCBP1_BOVIN Poly(rC)-binding protein 1 OS=Bos taurus GN=PCBP1 PE=2 SV=1
Length = 356
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 116/286 (40%), Gaps = 41/286 (14%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGVPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
SV + + I + ET+ + + P P P P G
Sbjct: 154 SVTECVKQICLVMLETL-------SQSPQGRVMTIPYQPMPASSPVICAGGQDRCSDAAG 206
Query: 148 PFHSMDRGMGPSQPFD-HQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRS 206
H+ GP P D + H + P+ D + + H
Sbjct: 207 YPHATHDLEGP--PLDAYSIQGQHTISPL-----DLAKLNQVARQQSHFAMMH------- 252
Query: 207 WTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAI--LTSTTIEVVIPQLYMAHVYGENN 264
GG G D+SS P G A++ T TT E+ IP + + G
Sbjct: 253 ------GGTGFAGIDSSS-------PEVKGYWASLDASTQTTHELTIPNNLIGCIIGRQG 299
Query: 265 SNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHA 310
+N++ IRQ+SGA + + +P G++ V ++G++ + AQ LI+A
Sbjct: 300 ANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINA 345
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +R +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIREESGARINISE-------GNCPERIITLTGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS + V + G+ S+
Sbjct: 283 ELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----PVEGSSGRQ-VTITGSAASIS 337
Query: 91 DALFHITSRL 100
A + I +RL
Sbjct: 338 LAQYLINARL 347
>sp|Q15366|PCBP2_HUMAN Poly(rC)-binding protein 2 OS=Homo sapiens GN=PCBP2 PE=1 SV=1
Length = 365
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 126/311 (40%), Gaps = 85/311 (27%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + ET+ S PP + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLETL------------SQSPP--KGVTIPYRPK--PSS-----SPVI 192
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 193 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 230
Query: 208 TPQGV-------------------------GGGDPRGFDASS----GFTPRNRPVESGNH 238
T QG G G ++SS G+ + ++ +H
Sbjct: 231 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNTGFSGIESSSPEVKGYWGLDASAQTTSH 290
Query: 239 AAILTSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTS 298
E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++
Sbjct: 291 ---------ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSA 341
Query: 299 DQMRAAQSLIH 309
+ AQ LI+
Sbjct: 342 ASISLAQYLIN 352
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+ S+
Sbjct: 291 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGSAASIS 345
Query: 91 DALFHITSRL 100
A + I RL
Sbjct: 346 LAQYLINVRL 355
>sp|Q61990|PCBP2_MOUSE Poly(rC)-binding protein 2 OS=Mus musculus GN=Pcbp2 PE=1 SV=1
Length = 362
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/305 (23%), Positives = 126/305 (41%), Gaps = 76/305 (24%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
V RL+V + Q G L+G+GG + E+R +TGA ++V D P + + + + G
Sbjct: 98 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLP---NSTERAITIAGIPQ 153
Query: 88 SVQDALFHITSRLRETIFPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVG 147
S+ + + I + E+ P G + P+RP+ P+S SPV
Sbjct: 154 SIIECVKQICVVMLES--------PPKGVTI----------PYRPK--PSS-----SPVI 188
Query: 148 PFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPYGSERPGHGPTFDRPPSPRSW 207
DR +S G SD FP+ + P + PP ++
Sbjct: 189 FAGGQDR-------------YSTG--------SDSASFPHTTPSMCLNPDLEGPP-LEAY 226
Query: 208 TPQG-----------------------VGGGDPRGFDASSGFTPRNRPVESGNHAAILTS 244
T QG + G+ GF +P + +G A+ T
Sbjct: 227 TIQGQYAIPQPDLTKLHQLAMQQSHFPMTHGNT-GFSGIESSSPEVKGYWAGLDASAQT- 284
Query: 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ E+ IP + + G + ++ IRQ+SGA + + +P G+T+ V ++G++ + A
Sbjct: 285 TSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLA 344
Query: 305 QSLIH 309
Q LI+
Sbjct: 345 QYLIN 349
Score = 39.7 bits (91), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ RLL+H +++G ++G+ G V +MR +GA I + G+ + I+ + G +
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISE-------GNCPERIITLAGPTN 66
Query: 88 SVQDALFHITSRLRETI 104
++ A I +L E I
Sbjct: 67 AIFKAFAMIIDKLEEDI 83
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ P GS D V + G+ S+
Sbjct: 288 ELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI----ANPVEGST-DRQVTITGSAASIS 342
Query: 91 DALFHITSRL 100
A + I RL
Sbjct: 343 LAQYLINVRL 352
>sp|O19049|HNRPK_RABIT Heterogeneous nuclear ribonucleoprotein K OS=Oryctolagus cuniculus
GN=HNRNPK PE=2 SV=1
Length = 463
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|P61980|HNRPK_RAT Heterogeneous nuclear ribonucleoprotein K OS=Rattus norvegicus
GN=Hnrnpk PE=1 SV=1
Length = 463
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|P61979|HNRPK_MOUSE Heterogeneous nuclear ribonucleoprotein K OS=Mus musculus GN=Hnrnpk
PE=1 SV=1
Length = 463
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|P61978|HNRPK_HUMAN Heterogeneous nuclear ribonucleoprotein K OS=Homo sapiens GN=HNRNPK
PE=1 SV=1
Length = 463
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|Q5R5H8|HNRPK_PONAB Heterogeneous nuclear ribonucleoprotein K OS=Pongo abelii GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|Q4R4M6|HNRPK_MACFA Heterogeneous nuclear ribonucleoprotein K OS=Macaca fascicularis
GN=HNRNPK PE=2 SV=1
Length = 464
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|Q3T0D0|HNRPK_BOVIN Heterogeneous nuclear ribonucleoprotein K OS=Bos taurus GN=HNRNPK
PE=2 SV=1
Length = 464
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 389 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 448
Query: 306 SLIH 309
L+
Sbjct: 449 YLLQ 452
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 41/78 (52%), Gaps = 5/78 (6%)
Query: 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIG 84
G + ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 385 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITG 439
Query: 85 NYHSVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 440 TQDQIQNAQYLLQNSVKQ 457
>sp|Q5ZIQ3|HNRPK_CHICK Heterogeneous nuclear ribonucleoprotein K OS=Gallus gallus
GN=HNRNPK PE=2 SV=1
Length = 427
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 38/64 (59%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQ 305
T +V IP+ + G+ + IR SGA++ +++P G+ + ++ ++GT DQ++ AQ
Sbjct: 353 TTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQ 412
Query: 306 SLIH 309
L+
Sbjct: 413 YLLQ 416
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ ++ + G ++G+GG + ++R +GASI++ P GS D I+ + G
Sbjct: 352 ITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI----DEPLEGS-EDRIITITGTQD 406
Query: 88 SVQDALFHITSRLRE 102
+Q+A + + + +++
Sbjct: 407 QIQNAQYLLQNSVKQ 421
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK------DQAPRCGSPHDEIVQVI 83
RLL+H G ++G G + E+R T +I++F + D+ G D +V+ I
Sbjct: 121 RLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQECCPHSTDRVVLIGGKPDRVVECI 179
>sp|P57721|PCBP3_HUMAN Poly(rC)-binding protein 3 OS=Homo sapiens GN=PCBP3 PE=2 SV=2
Length = 371
Score = 44.7 bits (104), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
R+ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 RMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D +
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 190
Query: 305 QSLIHAFIL 313
I +L
Sbjct: 191 VKQICVVML 199
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANIS 351
Query: 91 DALFHITSRLRETIFPM 107
A + I +RL + M
Sbjct: 352 LAQYLINARLTSEVTGM 368
>sp|P57722|PCBP3_MOUSE Poly(rC)-binding protein 3 OS=Mus musculus GN=Pcbp3 PE=2 SV=3
Length = 371
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%)
Query: 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRA 303
++T E+ IP + + G + ++ IRQ+SGA + + + G++E + ++GT +
Sbjct: 293 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 352
Query: 304 AQSLIHAFILCGVT 317
AQ LI+A + VT
Sbjct: 353 AQYLINARLTSEVT 366
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 12 RVHSRIAEIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPR 71
++ S+++E G + RLL+H +++G ++G+ G V +MR +GA I +
Sbjct: 32 KMESKVSEGGLNV--TLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISE------ 83
Query: 72 CGSPHDEIVQVIGNYHSVQDALFHITSRLRETIF 105
G+ + IV + G ++ A I + E I
Sbjct: 84 -GNCPERIVTITGPTDAIFKAFAMIAYKFEEDII 116
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL+V + Q G L+G+GG + E+R +TGA ++V
Sbjct: 130 VTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +V+P + G+ S + IR+ +GA V V D P +TE V +SGT D +
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDMLPNSTERAVTISGTPDAIIQC 190
Query: 305 QSLIHAFIL 313
I +L
Sbjct: 191 VKQICVVML 199
Score = 36.2 bits (82), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 5/77 (6%)
Query: 31 RLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQ 90
L + + IGC++GR G ++E+R+ +GA I++ + GS +I + G ++
Sbjct: 297 ELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATE----GSSERQIT-ITGTPANIS 351
Query: 91 DALFHITSRLRETIFPM 107
A + I +RL + M
Sbjct: 352 LAQYLINARLTSEVTGM 368
>sp|O74919|RNC1_SCHPO RNA-binding protein rnc1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rnc1 PE=1 SV=1
Length = 398
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 12/78 (15%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE----IVQVI 83
V + + + +GC++GRGG +SE+RR +G+ I + PHDE + +
Sbjct: 321 VTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI--------AKEPHDETGERMFTIT 372
Query: 84 GNYHSVQDALFHITSRLR 101
G + + ALF + +L
Sbjct: 373 GTHEENEKALFLLYQQLE 390
>sp|P57723|PCBP4_HUMAN Poly(rC)-binding protein 4 OS=Homo sapiens GN=PCBP4 PE=2 SV=1
Length = 403
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +PG Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 38.9 bits (89), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L+H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTA 70
Query: 88 SVQDALFHITSRLRETI 104
+V A+ I +L E +
Sbjct: 71 AVFHAVSMIAFKLDEDL 87
>sp|P57724|PCBP4_MOUSE Poly(rC)-binding protein 4 OS=Mus musculus GN=Pcbp4 PE=2 SV=1
Length = 403
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GMDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 38.9 bits (89), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 35.4 bits (80), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78
E G E + R+L+H +++G ++G+ G V +R + A I + GS +
Sbjct: 9 EEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPER 61
Query: 79 IVQVIGNYHSVQDALFHITSRLRETIFPMKRPGPNNGHS 117
I + G+ +V A+ I +L E + P NG S
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDEDLC----AAPANGGS 96
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>sp|Q0VCU0|PCBP4_BOVIN Poly(rC)-binding protein 4 OS=Bos taurus GN=PCBP4 PE=2 SV=1
Length = 403
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
E ++P + V G S +S IRQ+SGA++ + + GA E V ++G+ + AQ L
Sbjct: 245 EFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIALAQYL 304
Query: 308 IHAFI 312
I A +
Sbjct: 305 ITACL 309
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 6/82 (7%)
Query: 21 GFEPG-QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79
G +P Q LV + IGC++GR G +SE+R+ +GA I++ +QA G H
Sbjct: 234 GLDPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI--GNQAEGAGERH--- 288
Query: 80 VQVIGNYHSVQDALFHITSRLR 101
V + G+ S+ A + IT+ L
Sbjct: 289 VTITGSPVSIALAQYLITACLE 310
Score = 38.9 bits (89), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANV-VVNDPKPGATEGVVMVSGTSDQMRAA 304
T+ +VIP + G+ + + IR+ +GA V V D P +TE V VSG D +
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGDLLPNSTERAVTVSGVPDAIILC 162
Query: 305 QSLIHAFIL 313
I A IL
Sbjct: 163 VRQICAVIL 171
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRV 63
V RL++ + Q G L+G+ G + E+R TGA ++V
Sbjct: 102 VTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87
+ R+L+H +++G ++G+ G V +R + A I + GS + I + G+
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISE-------GSCPERITTITGSTA 70
Query: 88 SVQDALFHITSRLRETI 104
+V A+ I +L E +
Sbjct: 71 AVFHAVSMIAFKLDEDL 87
>sp|Q99NH0|ANR17_MOUSE Ankyrin repeat domain-containing protein 17 OS=Mus musculus
GN=Ankrd17 PE=1 SV=2
Length = 2603
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
+V +P ++ V G N++ IR+ +GA++ ++ K + ++ + G ++ R A L
Sbjct: 1725 KVSVPSTVISRVIGRGGCNINAIRECTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1784
Query: 308 IHAFI 312
I+A I
Sbjct: 1785 INALI 1789
>sp|O75179|ANR17_HUMAN Ankyrin repeat domain-containing protein 17 OS=Homo sapiens
GN=ANKRD17 PE=1 SV=3
Length = 2603
Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 248 EVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSL 307
+V +P ++ V G N++ IR+ +GA++ ++ K + ++ + G ++ R A L
Sbjct: 1729 KVSVPSTVISRVIGRGGCNINAIREFTGAHIDIDKQKDKTGDRIITIRGGTESTRQATQL 1788
Query: 308 IHAFI 312
I+A I
Sbjct: 1789 INALI 1793
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 OS=Homo sapiens GN=FUBP1
PE=1 SV=3
Length = 644
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GRGG +S +++ +G I++ AP G + + G SVQ A
Sbjct: 112 VGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQSA-----K 161
Query: 99 RLRETIFPMKRPGP 112
RL + I RP P
Sbjct: 162 RLLDQIVEKGRPAP 175
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 OS=Mus musculus GN=Fubp1
PE=1 SV=1
Length = 651
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GRGG +S +++ +G I++ AP G + + G SVQ A
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQSA-----K 157
Query: 99 RLRETIFPMKRPGP 112
RL + I RP P
Sbjct: 158 RLLDQIVEKGRPAP 171
Score = 32.7 bits (73), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GR G ++ +++ G I+ P D G+ D I Q+ G Q A IT
Sbjct: 283 VGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTPDRIAQITGPPDRCQHAAEIITD 337
Query: 99 RLR 101
LR
Sbjct: 338 LLR 340
>sp|Q32PX7|FUBP1_RAT Far upstream element-binding protein 1 OS=Rattus norvegicus
GN=Fubp1 PE=1 SV=1
Length = 639
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 10/74 (13%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GRGG +S +++ +G I++ AP G + + G SVQ A
Sbjct: 107 VGFIIGRGGEQISRIQQESGCKIQI-----APDSGGLPERSCMLTGTPESVQSA-----K 156
Query: 99 RLRETIFPMKRPGP 112
RL + I RP P
Sbjct: 157 RLLDQIVEKGRPAP 170
Score = 32.7 bits (73), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 39 IGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98
+G ++GR G ++ +++ G I+ P D G+ D I Q+ G Q A IT
Sbjct: 282 VGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTPDRIAQITGPPDRCQHAAEIITD 336
Query: 99 RLR 101
LR
Sbjct: 337 LLR 339
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,390,074
Number of Sequences: 539616
Number of extensions: 7065439
Number of successful extensions: 29520
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 735
Number of HSP's that attempted gapping in prelim test: 24645
Number of HSP's gapped (non-prelim): 3500
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)