Query 021032
Match_columns 318
No_of_seqs 182 out of 1672
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 11:45:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021032.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021032hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jvz_A KH type-splicing, FAR u 100.0 3.5E-29 1.2E-33 211.3 15.3 159 28-314 2-160 (164)
2 3krm_A Insulin-like growth fac 100.0 8.2E-29 2.8E-33 209.0 17.2 154 27-315 2-157 (163)
3 2anr_A Neuro-oncological ventr 100.0 6.6E-29 2.3E-33 212.6 13.9 172 25-315 3-176 (178)
4 2jzx_A Poly(RC)-binding protei 100.0 1.4E-28 4.9E-33 206.9 15.1 157 25-314 2-159 (160)
5 1j4w_A FUSE binding protein; s 100.0 2.6E-28 8.8E-33 208.2 14.3 170 27-312 2-174 (174)
6 2qnd_A FMR1 protein; KH domain 99.9 1.8E-21 6.2E-26 160.5 11.6 68 247-314 69-142 (144)
7 2e3u_A PH-DIM2P, hypothetical 99.8 2.2E-18 7.4E-23 151.1 12.7 67 26-102 32-103 (219)
8 3n89_A Defective in GERM LINE 99.7 1.2E-17 4.2E-22 156.2 15.0 76 24-99 26-103 (376)
9 1wvn_A Poly(RC)-binding protei 99.7 7.4E-18 2.5E-22 125.6 8.1 73 243-315 4-76 (82)
10 2p2r_A Poly(RC)-binding protei 99.7 7.8E-18 2.7E-22 123.7 7.8 72 244-315 4-75 (76)
11 1zzk_A Heterogeneous nuclear r 99.7 1.9E-17 6.5E-22 123.4 9.9 72 243-314 5-76 (82)
12 1tua_A Hypothetical protein AP 99.7 5.1E-17 1.7E-21 139.1 10.4 138 30-313 6-159 (191)
13 2axy_A Poly(RC)-binding protei 99.7 2.2E-17 7.5E-22 120.3 6.6 72 25-103 2-73 (73)
14 1x4n_A FAR upstream element bi 99.7 4.2E-17 1.4E-21 124.2 8.2 74 244-317 14-87 (92)
15 1dtj_A RNA-binding neurooncolo 99.7 6.7E-17 2.3E-21 118.6 7.6 71 244-314 2-75 (76)
16 1j5k_A Heterogeneous nuclear r 99.7 5.4E-17 1.8E-21 122.8 7.1 72 243-314 12-83 (89)
17 2axy_A Poly(RC)-binding protei 99.7 8.7E-17 3E-21 117.1 7.8 70 244-315 4-73 (73)
18 1ec6_A RNA-binding protein NOV 99.6 2.5E-16 8.4E-21 118.7 7.1 70 245-314 3-75 (87)
19 2p2r_A Poly(RC)-binding protei 99.6 2E-16 7E-21 116.0 6.5 74 25-103 2-75 (76)
20 1dtj_A RNA-binding neurooncolo 99.6 4.1E-16 1.4E-20 114.4 7.5 74 27-102 2-75 (76)
21 1zzk_A Heterogeneous nuclear r 99.6 7.2E-16 2.5E-20 114.8 8.9 74 25-103 4-77 (82)
22 2hh3_A KH-type splicing regula 99.6 4.1E-16 1.4E-20 121.5 7.6 71 245-315 11-81 (106)
23 1wvn_A Poly(RC)-binding protei 99.6 3.4E-16 1.2E-20 116.6 6.8 74 25-103 3-76 (82)
24 2hh2_A KH-type splicing regula 99.6 6.7E-16 2.3E-20 120.7 7.9 71 245-315 7-80 (107)
25 1x4m_A FAR upstream element bi 99.6 9.7E-16 3.3E-20 117.0 7.7 73 243-315 13-87 (94)
26 2opv_A KHSRP protein; KH domai 99.6 2.4E-15 8.1E-20 112.7 9.3 71 244-314 13-85 (85)
27 2dgr_A Ring finger and KH doma 99.6 7.3E-16 2.5E-20 114.7 6.3 69 243-314 8-76 (83)
28 1j5k_A Heterogeneous nuclear r 99.6 1.2E-15 4.2E-20 115.3 6.9 75 24-103 10-84 (89)
29 1ec6_A RNA-binding protein NOV 99.6 1.1E-15 3.7E-20 115.1 6.5 74 28-103 3-76 (87)
30 2opv_A KHSRP protein; KH domai 99.6 5.3E-15 1.8E-19 110.8 8.6 74 26-102 12-85 (85)
31 2dgr_A Ring finger and KH doma 99.6 1.1E-15 3.9E-20 113.7 4.8 70 25-102 7-76 (83)
32 2hh2_A KH-type splicing regula 99.6 3.3E-15 1.1E-19 116.7 7.4 73 29-103 8-80 (107)
33 1x4n_A FAR upstream element bi 99.6 4.4E-15 1.5E-19 112.9 7.7 74 25-103 12-85 (92)
34 1we8_A Tudor and KH domain con 99.6 6.9E-15 2.4E-19 114.4 8.9 71 244-314 14-86 (104)
35 1x4m_A FAR upstream element bi 99.6 3.6E-15 1.2E-19 113.8 6.1 76 25-103 12-87 (94)
36 1we8_A Tudor and KH domain con 99.5 1.6E-14 5.4E-19 112.4 9.0 77 24-103 11-87 (104)
37 2hh3_A KH-type splicing regula 99.5 1.2E-14 4E-19 113.3 7.4 72 27-103 10-81 (106)
38 2jzx_A Poly(RC)-binding protei 99.5 2.8E-14 9.5E-19 119.4 8.6 74 26-103 87-160 (160)
39 2anr_A Neuro-oncological ventr 99.5 3E-14 1E-18 121.3 8.3 74 27-103 103-176 (178)
40 2cte_A Vigilin; K homology typ 99.5 3E-14 1E-18 108.7 7.1 76 21-103 10-85 (94)
41 2ctm_A Vigilin; K homology typ 99.5 3.8E-14 1.3E-18 108.2 7.4 80 19-104 8-87 (95)
42 1vig_A Vigilin; RNA-binding pr 99.5 3.2E-14 1.1E-18 102.8 6.6 67 244-312 4-70 (71)
43 2ctl_A Vigilin; K homology typ 99.5 6.3E-14 2.2E-18 107.5 8.4 72 243-314 15-87 (97)
44 3krm_A Insulin-like growth fac 99.5 2.5E-13 8.4E-18 113.9 11.0 95 6-103 60-157 (163)
45 2cte_A Vigilin; K homology typ 99.5 8.7E-14 3E-18 106.1 7.2 70 243-314 15-84 (94)
46 2ctl_A Vigilin; K homology typ 99.5 1.2E-13 4.2E-18 105.8 8.1 74 26-103 15-88 (97)
47 2ctm_A Vigilin; K homology typ 99.5 1.6E-13 5.4E-18 104.8 7.9 71 243-314 15-85 (95)
48 1vig_A Vigilin; RNA-binding pr 99.4 1.2E-13 4.2E-18 99.7 5.9 67 26-99 3-69 (71)
49 1j4w_A FUSE binding protein; s 99.4 2.5E-13 8.4E-18 115.2 7.5 70 245-314 3-72 (174)
50 2ctk_A Vigilin; K homology typ 99.4 4.2E-13 1.5E-17 104.1 7.2 69 244-314 16-84 (104)
51 2jvz_A KH type-splicing, FAR u 99.4 1.1E-12 3.6E-17 110.0 8.3 71 245-315 2-74 (164)
52 2ctk_A Vigilin; K homology typ 99.3 1.4E-12 4.7E-17 101.2 6.7 71 26-103 15-85 (104)
53 2ctj_A Vigilin; K homology typ 99.3 2.1E-12 7.3E-17 98.4 5.0 78 19-103 8-86 (95)
54 2ctj_A Vigilin; K homology typ 99.3 6.5E-12 2.2E-16 95.7 6.8 70 243-314 15-85 (95)
55 2ctf_A Vigilin; K homology typ 99.3 1.5E-11 5.2E-16 94.9 8.1 65 245-314 27-92 (102)
56 2ctf_A Vigilin; K homology typ 99.2 1.3E-11 4.5E-16 95.2 7.7 69 25-103 24-93 (102)
57 2qnd_A FMR1 protein; KH domain 99.2 2.3E-11 7.9E-16 99.9 7.4 72 29-102 68-142 (144)
58 2cpq_A FragIle X mental retard 99.1 8.1E-11 2.8E-15 88.3 5.5 65 243-312 13-79 (91)
59 2cpq_A FragIle X mental retard 99.0 5.4E-10 1.9E-14 83.8 4.9 63 25-97 12-76 (91)
60 3n89_A Defective in GERM LINE 98.9 7.2E-10 2.5E-14 103.7 6.1 70 242-311 27-103 (376)
61 1k1g_A SF1-BO isoform; splicin 98.9 5.4E-09 1.9E-13 84.0 8.4 73 242-314 4-99 (131)
62 1k1g_A SF1-BO isoform; splicin 98.8 1.1E-08 3.6E-13 82.4 8.4 78 26-103 5-100 (131)
63 2yqr_A KIAA0907 protein; struc 98.8 1.9E-08 6.4E-13 79.4 9.2 71 244-314 11-99 (119)
64 2yqr_A KIAA0907 protein; struc 98.7 3.6E-08 1.2E-12 77.7 8.1 77 26-102 10-99 (119)
65 2bl5_A MGC83862 protein, quaki 98.6 2.3E-08 8E-13 80.9 3.1 75 27-101 1-100 (140)
66 2e3u_A PH-DIM2P, hypothetical 98.5 9.4E-08 3.2E-12 83.5 6.5 63 245-312 34-101 (219)
67 1tua_A Hypothetical protein AP 98.4 4.8E-07 1.6E-11 77.2 7.0 63 246-313 5-72 (191)
68 3u1k_A Polyribonucleotide nucl 98.4 3.2E-07 1.1E-11 91.7 6.7 85 5-100 538-629 (630)
69 2bl5_A MGC83862 protein, quaki 98.4 2.9E-07 9.9E-12 74.4 5.0 69 245-313 2-100 (140)
70 3v69_A Protein filia; RNA-bind 98.3 1.8E-06 6.2E-11 68.5 8.5 68 246-314 57-124 (140)
71 3u1k_A Polyribonucleotide nucl 98.1 1.9E-06 6.4E-11 86.2 4.6 62 245-312 567-629 (630)
72 3v69_A Protein filia; RNA-bind 98.0 1.6E-05 5.3E-10 63.2 7.1 68 29-102 57-124 (140)
73 4aid_A Polyribonucleotide nucl 97.9 6E-06 2E-10 83.5 3.5 88 5-103 541-635 (726)
74 2cxc_A NUSA; transcription ter 97.8 3E-05 1E-09 62.9 6.4 64 2-65 6-73 (144)
75 4aid_A Polyribonucleotide nucl 97.3 4E-05 1.4E-09 77.5 0.9 63 246-314 571-634 (726)
76 3cdi_A Polynucleotide phosphor 96.4 0.001 3.6E-08 67.4 2.5 86 5-101 531-623 (723)
77 2asb_A Transcription elongatio 96.2 0.0098 3.3E-07 52.3 6.9 39 245-283 184-222 (251)
78 1k0r_A NUSA; two component arr 96.1 0.01 3.4E-07 55.2 7.1 39 245-283 307-345 (366)
79 1e3p_A Guanosine pentaphosphat 95.4 0.0013 4.4E-08 67.0 -2.4 83 5-98 570-658 (757)
80 3cdi_A Polynucleotide phosphor 95.1 0.0037 1.3E-07 63.4 0.0 63 245-313 560-623 (723)
81 1e3p_A Guanosine pentaphosphat 93.8 0.0028 9.6E-08 64.6 -4.3 60 247-312 600-660 (757)
82 2cxc_A NUSA; transcription ter 91.3 0.16 5.5E-06 40.8 3.8 38 245-282 36-73 (144)
83 2asb_A Transcription elongatio 88.0 0.31 1.1E-05 42.8 3.2 39 28-66 184-222 (251)
84 1hh2_P NUSA, N utilization sub 86.7 0.42 1.5E-05 44.0 3.5 40 27-66 302-341 (344)
85 1hh2_P NUSA, N utilization sub 85.4 0.54 1.8E-05 43.3 3.5 38 244-281 302-339 (344)
86 1k0r_A NUSA; two component arr 84.6 0.57 2E-05 43.4 3.3 40 27-66 306-345 (366)
87 1wh9_A 40S ribosomal protein S 83.1 0.4 1.4E-05 35.5 1.3 29 28-56 35-63 (92)
88 2pt7_G HP1451, hypothetical pr 80.3 0.64 2.2E-05 37.7 1.6 67 29-104 34-100 (152)
89 1wh9_A 40S ribosomal protein S 72.5 1.6 5.3E-05 32.2 1.7 28 246-273 36-63 (92)
90 2pt7_G HP1451, hypothetical pr 70.4 2.8 9.5E-05 33.9 2.9 30 245-274 33-62 (152)
91 2ba0_A Archeal exosome RNA bin 66.6 18 0.0006 31.0 7.5 59 247-311 138-196 (229)
92 3iev_A GTP-binding protein ERA 66.3 2.2 7.6E-05 38.2 1.8 37 27-63 239-284 (308)
93 3u5c_D RP13, YS3, 40S ribosoma 65.0 2.6 8.9E-05 36.6 1.9 29 28-56 44-72 (240)
94 3j20_C 30S ribosomal protein S 61.9 2.7 9.2E-05 35.8 1.3 28 28-55 40-67 (210)
95 3iz6_B 40S ribosomal protein S 60.2 2.7 9.1E-05 36.2 1.0 29 28-56 44-72 (227)
96 2xzm_C KH domain containing pr 60.0 3.7 0.00013 35.7 1.9 29 28-56 47-75 (243)
97 2z0s_A Probable exosome comple 58.5 36 0.0012 29.1 8.1 59 247-311 150-209 (235)
98 3r8n_C 30S ribosomal protein S 54.0 3 0.0001 35.4 0.3 35 29-63 62-100 (206)
99 3gku_A Probable RNA-binding pr 52.4 3.6 0.00012 35.4 0.6 66 30-103 94-160 (225)
100 3i1m_C 30S ribosomal protein S 51.3 3.5 0.00012 35.7 0.3 36 28-63 62-101 (233)
101 2zkq_c 40S ribosomal protein S 51.1 3.3 0.00011 36.0 0.1 29 28-56 44-72 (243)
102 2vqe_C 30S ribosomal protein S 48.5 5.7 0.00019 34.5 1.2 28 29-56 63-90 (239)
103 3iev_A GTP-binding protein ERA 48.3 9.1 0.00031 34.1 2.6 37 244-280 239-284 (308)
104 3bbn_C Ribosomal protein S3; s 47.7 4.8 0.00017 34.4 0.6 28 29-56 71-98 (218)
105 3u5c_D RP13, YS3, 40S ribosoma 43.6 9.5 0.00033 33.0 1.8 28 246-273 45-72 (240)
106 1wf3_A GTP-binding protein; GT 43.4 4 0.00014 36.4 -0.6 34 30-63 232-274 (301)
107 3gku_A Probable RNA-binding pr 43.2 7.7 0.00026 33.3 1.2 31 246-276 93-123 (225)
108 3j20_C 30S ribosomal protein S 39.9 11 0.00038 31.9 1.7 27 247-273 42-68 (210)
109 2xzm_C KH domain containing pr 39.9 12 0.00041 32.5 1.9 28 246-273 48-75 (243)
110 3iz6_B 40S ribosomal protein S 37.9 9.9 0.00034 32.7 1.0 28 246-273 45-72 (227)
111 1wf3_A GTP-binding protein; GT 35.2 16 0.00054 32.4 2.0 35 246-280 231-274 (301)
112 3dhx_A Methionine import ATP-b 34.4 49 0.0017 24.4 4.4 66 27-98 21-87 (106)
113 2zkq_c 40S ribosomal protein S 33.7 10 0.00036 32.9 0.5 29 245-273 44-72 (243)
114 3r8n_C 30S ribosomal protein S 31.6 11 0.00037 31.9 0.3 34 247-280 63-100 (206)
115 2ba0_A Archeal exosome RNA bin 31.5 75 0.0026 27.0 5.6 44 33-87 141-184 (229)
116 2vqe_C 30S ribosomal protein S 30.8 17 0.00058 31.5 1.3 27 247-273 64-90 (239)
117 3bbn_C Ribosomal protein S3; s 30.1 15 0.00051 31.4 0.9 27 247-273 72-98 (218)
118 2z0s_A Probable exosome comple 29.6 79 0.0027 26.9 5.5 44 32-86 152-195 (235)
119 3i1m_C 30S ribosomal protein S 29.2 12 0.00043 32.2 0.2 33 247-279 64-100 (233)
120 1go3_E DNA-directed RNA polyme 28.9 35 0.0012 27.9 2.9 36 244-282 6-53 (187)
121 2ja9_A Exosome complex exonucl 28.4 65 0.0022 26.2 4.5 58 247-310 93-152 (175)
122 1go3_E DNA-directed RNA polyme 26.2 80 0.0027 25.6 4.7 36 27-65 6-53 (187)
123 1ega_A Protein (GTP-binding pr 25.4 20 0.00068 31.7 0.8 29 28-56 231-260 (301)
No 1
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=211.31 Aligned_cols=159 Identities=19% Similarity=0.354 Sum_probs=129.9
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhcCCC
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFPM 107 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~~~~ 107 (318)
++.+|+||.+++|.||||+|++||+|+++|||+|+|.+... ++...||+|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~---~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGS---QNTNVDKPLRIIGDPYKVQQACEMVMDILRERDQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTT---SSSSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC-
Confidence 57899999999999999999999999999999999964321 23467899999999999999999999988764100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCC
Q 021032 108 KRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFPY 187 (318)
Q Consensus 108 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 187 (318)
.| . .. . .|
T Consensus 78 -------------~~--------------------~-------~~---------------------------~-----~~ 85 (164)
T 2jvz_A 78 -------------GF--------------------G-------DR---------------------------N-----EY 85 (164)
T ss_dssp -------------CC--------------------S-------SC---------------------------S-----SC
T ss_pred -------------CC--------------------C-------Cc---------------------------c-----cc
Confidence 00 0 00 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEecccccccccccccchH
Q 021032 188 GSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSNL 267 (318)
Q Consensus 188 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~IP~~~vG~IIGk~G~~I 267 (318)
+ .....+.+|.||.+++|+||||+|++|
T Consensus 86 ~----------------------------------------------------~~~~~~~~i~vp~~~~g~iIGk~G~~I 113 (164)
T 2jvz_A 86 G----------------------------------------------------SRIGGGIDVPVPRHSVGVVIGRSGEMI 113 (164)
T ss_dssp T----------------------------------------------------TSCSSSBCCEEETTTHHHHHCSSSHHH
T ss_pred C----------------------------------------------------CCCCceEEEEEChhhccccCCCCcHhH
Confidence 0 000124677899999999999999999
Q ss_pred HHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 268 SHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 268 k~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
++|++.|||+|+|.+..+.+.+|.|+|+|++++++.|+.+|.+++.+
T Consensus 114 ~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 114 KKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHTCCEEEECCCCTTSSEEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEEeCCCCCCCcEEEEEEcCHHHHHHHHHHHHHHHhh
Confidence 99999999999998877677799999999999999999999999875
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.96 E-value=8.2e-29 Score=209.00 Aligned_cols=154 Identities=19% Similarity=0.323 Sum_probs=129.8
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhcCC
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~~~ 106 (318)
+-+++|+||.+.+|.||||+|++||+|+++|||+|+|.+. .++.+.+|+|+|+|+++++.+|..+|.+++.+....
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~----~~~~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~~ 77 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP----ETPDSKVRMVIITGPPEAQFKAQGRIYGKLKEENFF 77 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC----SSTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC----CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 4589999999999999999999999999999999999753 234578999999999999999999999999875100
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 021032 107 MKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFP 186 (318)
Q Consensus 107 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 186 (318)
.| .
T Consensus 78 -------------------------------------~~------~---------------------------------- 80 (163)
T 3krm_A 78 -------------------------------------GP------K---------------------------------- 80 (163)
T ss_dssp -------------------------------------CS------S----------------------------------
T ss_pred -------------------------------------cc------c----------------------------------
Confidence 00 0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEecccccccccccccch
Q 021032 187 YGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266 (318)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~IP~~~vG~IIGk~G~~ 266 (318)
.....+.++.||.+++|+||||+|++
T Consensus 81 ------------------------------------------------------~~~~~~~~i~vp~~~~g~iIGkgG~~ 106 (163)
T 3krm_A 81 ------------------------------------------------------EEVKLETHIRVPASAAGRVIGKGGKT 106 (163)
T ss_dssp ------------------------------------------------------CCCCEEEEEEEETTTHHHHHCGGGHH
T ss_pred ------------------------------------------------------cCCceEEEEEcChhheeeEEcCCChH
Confidence 00125679999999999999999999
Q ss_pred HHHHHHHhCCEEEEcCCC-CCCC-CeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 267 LSHIRQISGANVVVNDPK-PGAT-EGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 267 Ik~Ir~~SGA~I~i~~~~-~~~~-er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
|++|++.|||+|+|.+.. ++++ ++.|+|+|++++++.|+.+|.++|.+-
T Consensus 107 I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 107 VNELQNLTAAEVVVPRDQTPDENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHCCEEECCTTCCCCTTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEECCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 999999999999997642 3444 458999999999999999999999863
No 3
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.96 E-value=6.6e-29 Score=212.57 Aligned_cols=172 Identities=22% Similarity=0.357 Sum_probs=133.4
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhc
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~ 104 (318)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+..+ ..+.+.+|+|+|+|..++|.+|..+|.+++.+..
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~--~~~~~~er~v~I~G~~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKD--FYPGTTERVCLIQGTIEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTC--BCTTSSEEEEEEEECHHHHHHHHHHHHHHHTCCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCC--CCCCCCCceEEEEeCHHHHHHHHHHHHHHHhccC
Confidence 45789999999999999999999999999999999999975422 1234679999999999999999999999987751
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 021032 105 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (318)
... . ...+.. +.+
T Consensus 81 ~~~---~------------------------------~~~~~~---------------------------~~~------- 93 (178)
T 2anr_A 81 QNV---A------------------------------KTEPVS---------------------------ILQ------- 93 (178)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred Ccc---c------------------------------cCCccc---------------------------ccC-------
Confidence 100 0 000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccccccccccccc
Q 021032 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264 (318)
Q Consensus 185 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~IP~~~vG~IIGk~G 264 (318)
++. + . ......+.++.||.+++|+||||+|
T Consensus 94 ------------------------~~~-------~------~-------------~~~~~~~~~i~Vp~~~vg~iIGkgG 123 (178)
T 2anr_A 94 ------------------------PQT-------T------V-------------NPDRANQVKIIVPNSTAGLIIGKGG 123 (178)
T ss_dssp --------------------------------------------------------CGGGGEEEEEEEHHHHHHHHCGGG
T ss_pred ------------------------Ccc-------C------C-------------CCCCceEEEEEEchhheeeeECCCc
Confidence 000 0 0 0012367899999999999999999
Q ss_pred chHHHHHHHhCCEEEEcCCC--CCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 265 SNLSHIRQISGANVVVNDPK--PGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 265 ~~Ik~Ir~~SGA~I~i~~~~--~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
++|++|++.|||+|+|.+.. +.+.+|.|+|+|+++++++|+.+|.++|.+.
T Consensus 124 ~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 124 ATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp HHHHHHHHHSSCEEEECCCC----CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999998653 3567899999999999999999999999875
No 4
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=206.92 Aligned_cols=157 Identities=24% Similarity=0.412 Sum_probs=132.8
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhc
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~ 104 (318)
+.+++++|+||.+.+|.||||||++||+|+++|||+|+|... .+.+|.|+|+|+.++|.+|+.+|.+++.+.+
T Consensus 2 ~~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~-------~~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~ 74 (160)
T 2jzx_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEEDI 74 (160)
T ss_dssp CCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC-------TTTEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC-------CCCceEEEEEeCHHHHHHHHHHHHHHHHhhc
Confidence 467899999999999999999999999999999999999743 2468999999999999999999999998863
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 021032 105 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (318)
... . .+.+.
T Consensus 75 ~~~-------------------------~-----~~~~~----------------------------------------- 83 (160)
T 2jzx_A 75 SSS-------------------------M-----TNSTA----------------------------------------- 83 (160)
T ss_dssp TSC-------------------------C-----CSSSC-----------------------------------------
T ss_pred ccc-------------------------C-----CCCcc-----------------------------------------
Confidence 100 0 00000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEeccccccccccccc
Q 021032 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENN 264 (318)
Q Consensus 185 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~IP~~~vG~IIGk~G 264 (318)
......+.++.||.+++|+||||+|
T Consensus 84 -------------------------------------------------------~~~~~~~~~i~vp~~~~g~iIGkgG 108 (160)
T 2jzx_A 84 -------------------------------------------------------ASRPPVTLRLVVPASQCGSLIGKGG 108 (160)
T ss_dssp -------------------------------------------------------CCCCSEEEEEEEEHHHHHHHHCGGG
T ss_pred -------------------------------------------------------CCCCCEEEEEEEChhheeeEECCCC
Confidence 0001368999999999999999999
Q ss_pred chHHHHHHHhCCEEEEcC-CCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 265 SNLSHIRQISGANVVVND-PKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 265 ~~Ik~Ir~~SGA~I~i~~-~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
++|++|++.|||+|+|.+ ..++++++.|+|+|++++++.|+.+|.+++.+
T Consensus 109 ~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 109 CKIKEIRESTGAQVQVAGDMLPNSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeEEECCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 999999999999999975 34677899999999999999999999999875
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.96 E-value=2.6e-28 Score=208.20 Aligned_cols=170 Identities=22% Similarity=0.351 Sum_probs=127.7
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhcCC
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETIFP 106 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~~~ 106 (318)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+.+ ....||+|+|+|+.++|.+|+.+|.+++++..
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~-----~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~-- 74 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD-----GTTPERIAQITGPPDRAQHAAEIITDLLRSVQ-- 74 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT-----TSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc--
Confidence 46799999999999999999999999999999999996431 23678999999999999999999999998861
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCC
Q 021032 107 MKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIPFP 186 (318)
Q Consensus 107 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 186 (318)
.. .|. . +.|.+. ++.
T Consensus 75 ~~--------------------~~~------~----~~p~~~----------------------~~~------------- 89 (174)
T 1j4w_A 75 AG--------------------NPG------G----PGPGGR----------------------GRG------------- 89 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cC--------------------CCC------C----CCCCCC----------------------CCC-------------
Confidence 00 000 0 000000 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEEEEecccccccccccccch
Q 021032 187 YGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIEVVIPQLYMAHVYGENNSN 266 (318)
Q Consensus 187 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~v~IP~~~vG~IIGk~G~~ 266 (318)
++. ..|.. .......+.++.||.+++|+||||+|++
T Consensus 90 ~~~------~~~~~--------------------------------------~~~~~~~~~~i~vp~~~~g~iIGkgG~~ 125 (174)
T 1j4w_A 90 RGQ------GNWNM--------------------------------------GPPGGLQEFNFIVPTGKTGLIIGKGGET 125 (174)
T ss_dssp ----------------------------------------------------------CEEEEEEETTTHHHHHCGGGHH
T ss_pred CCC------Ccccc--------------------------------------CCCCCcEEEEEEEChHHcCeeECCCchH
Confidence 000 00000 0001135789999999999999999999
Q ss_pred HHHHHHHhCCEEEEcCCC---CCCCCeEEEEEcCHHHHHHHHHHHHHHH
Q 021032 267 LSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLIHAFI 312 (318)
Q Consensus 267 Ik~Ir~~SGA~I~i~~~~---~~~~er~v~I~Gt~~~v~~A~~lI~~~i 312 (318)
|++|++.|||+|+|.+.. +++.+|.|+|+|++++++.|+.||+++|
T Consensus 126 Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 126 IKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHCCEEEEECCCTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCEEEECCCCCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999999999999998653 3477899999999999999999999874
No 6
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.86 E-value=1.8e-21 Score=160.53 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=59.1
Q ss_pred EEEEecccccccccccccchHHHHHHHhCC-EEEEcCCCCC---CCC--eEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGA-NVVVNDPKPG---ATE--GVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA-~I~i~~~~~~---~~e--r~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
.+|.||.+.+|++|||+|.+|+.|++.||| +|+|....+. .++ +.|+|+|++++|+.|+.||.++|.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999997 9999754321 233 3589999999999999999999975
No 7
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.77 E-value=2.2e-18 Score=151.07 Aligned_cols=67 Identities=16% Similarity=0.133 Sum_probs=59.1
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEec-----HHHHHHHHHHHHHHH
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGN-----YHSVQDALFHITSRL 100 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~-----~~~V~~A~~~I~~~l 100 (318)
.+...++.||...+|.|||+||++|+.|+++|||+|+|.. .++.|+|.+. ++++.+|...|..+.
T Consensus 32 aP~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~----------~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 32 FKQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS----------ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp -CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT----------TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc----------CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999942 3688999986 699999999999988
Q ss_pred Hh
Q 021032 101 RE 102 (318)
Q Consensus 101 ~e 102 (318)
+.
T Consensus 102 rg 103 (219)
T 2e3u_A 102 RG 103 (219)
T ss_dssp TT
T ss_pred cc
Confidence 54
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.75 E-value=1.2e-17 Score=156.17 Aligned_cols=76 Identities=16% Similarity=0.195 Sum_probs=63.8
Q ss_pred CCCeeEEEEEEecccceeeeCCCC--chHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHH
Q 021032 24 PGQAVVARLLVHSQQIGCLLGRGG--HIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSR 99 (318)
Q Consensus 24 ~~~~~~~rllVp~~~vG~IIGkgG--~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~ 99 (318)
+.+.+|+++.||..+++.|||||| ++|++|+++|||+|++...+.-.....+....|+|+|.+++|++|...|.++
T Consensus 26 ~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 26 NPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp CTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred cCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 578999999999999999999999 9999999999999999654300011124567899999999999999999874
No 9
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.73 E-value=7.4e-18 Score=125.63 Aligned_cols=73 Identities=30% Similarity=0.517 Sum_probs=67.7
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
...+.+|.||.+++|+||||+|++|++|++.|||+|+|.++.+++.+|.|+|+|+++++++|+.||.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999999999999999999999999998778889999999999999999999999998775
No 10
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.73 E-value=7.8e-18 Score=123.67 Aligned_cols=72 Identities=28% Similarity=0.511 Sum_probs=68.6
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|.++.+++.+|.|+|+|++++++.|+.||.+++.++
T Consensus 4 ~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 4 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 578999999999999999999999999999999999998888889999999999999999999999999864
No 11
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.72 E-value=1.9e-17 Score=123.39 Aligned_cols=72 Identities=26% Similarity=0.507 Sum_probs=68.1
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++.+|.|+|+|+++++++|+.||++++.+
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~ 76 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 76 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999999999999999999999877788999999999999999999999999875
No 12
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.70 E-value=5.1e-17 Score=139.07 Aligned_cols=138 Identities=17% Similarity=0.196 Sum_probs=111.2
Q ss_pred EEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEE-----ecHHHHHHHHHHHHHHHHhhc
Q 021032 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVI-----GNYHSVQDALFHITSRLRETI 104 (318)
Q Consensus 30 ~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~-----G~~~~V~~A~~~I~~~l~e~~ 104 (318)
.+++||...+|.|||++|++++.|++++|++|++.. .++.|+|. |++.++.+|...|....+.+-
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf~ 75 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGFP 75 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 689999999999999999999999999999999963 47889999 999999999999999888751
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCC
Q 021032 105 FPMKRPGPNNGHSYLPPFPEMPPPPFRPRHNPASPGSYPSPVGPFHSMDRGMGPSQPFDHQAAFSHGMDPMVPPNSDRIP 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 184 (318)
.++ | ..
T Consensus 76 ~e~-----------------------------------------------------------A----~~----------- 81 (191)
T 1tua_A 76 PEK-----------------------------------------------------------A----FR----------- 81 (191)
T ss_dssp HHH-----------------------------------------------------------H----GG-----------
T ss_pred HHH-----------------------------------------------------------h----hh-----------
Confidence 100 0 00
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccCcceEEE-EEec----------c
Q 021032 185 FPYGSERPGHGPTFDRPPSPRSWTPQGVGGGDPRGFDASSGFTPRNRPVESGNHAAILTSTTIE-VVIP----------Q 253 (318)
Q Consensus 185 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~t~~-v~IP----------~ 253 (318)
+ .......+ +.++ .
T Consensus 82 ------------------------------------------------L-------l~Dd~~~e~i~i~~~~~~~~~~~~ 106 (191)
T 1tua_A 82 ------------------------------------------------L-------LEEDQILVVVDLKQVVGDSQNHLK 106 (191)
T ss_dssp ------------------------------------------------G-------GSTTEEEEEEETHHHHTTCHHHHH
T ss_pred ------------------------------------------------c-------ccCcceeEEEEcccccccCchhHH
Confidence 0 00001111 1122 3
Q ss_pred cccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHH
Q 021032 254 LYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFIL 313 (318)
Q Consensus 254 ~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~ 313 (318)
...|+||||+|.+|+.|++.|||+|.|.+ ++|.|.|++++++.|+.+|.++|.
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~-------~~v~i~G~~~~i~~Ar~~i~~li~ 159 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE-------YEVAIIGDYERAMAAKQAIEMLAE 159 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS-------SEEEEEEEHHHHHHHHHHHHHHHT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC-------CEEEEEeChHHHHHHHHHHHHHHc
Confidence 46899999999999999999999999953 489999999999999999999996
No 13
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.70 E-value=2.2e-17 Score=120.25 Aligned_cols=72 Identities=26% Similarity=0.515 Sum_probs=65.5
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
+.+++++|+||++++|.||||||++||+|+++|||+|+|.+. ...+|+|+|.|++++|.+|+.+|.++|+++
T Consensus 2 ~~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 2 NVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred CceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 457899999999999999999999999999999999999753 246999999999999999999999999873
No 14
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.69 E-value=4.2e-17 Score=124.16 Aligned_cols=74 Identities=23% Similarity=0.399 Sum_probs=69.7
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHcCcC
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCGVT 317 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~~~ 317 (318)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..++..+|.|+|+|+++++++|+.||+++|.+.++
T Consensus 14 ~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 14 VMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhccc
Confidence 57899999999999999999999999999999999999877778899999999999999999999999998664
No 15
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.68 E-value=6.7e-17 Score=118.63 Aligned_cols=71 Identities=21% Similarity=0.438 Sum_probs=64.9
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCC---CCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~---~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
..+.++.||.+++|+||||+|++|++|++.|||+|+|.+. .+++.+|.|+|+|++++++.|+.+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 3688999999999999999999999999999999999864 3577899999999999999999999998865
No 16
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.68 E-value=5.4e-17 Score=122.81 Aligned_cols=72 Identities=26% Similarity=0.507 Sum_probs=68.2
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|+++.+++.+|.|+|+|+++++++|+.+|++++.+
T Consensus 12 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 12 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999999877788999999999999999999999999875
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.68 E-value=8.7e-17 Score=117.07 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=65.0
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
..+.++.||.+.+|.||||+|++|++|++.|||+|+|++. +..||.|+|+|+++++..|+.+|.++|.++
T Consensus 4 ~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~--~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC--CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999865 568999999999999999999999999863
No 18
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.64 E-value=2.5e-16 Score=118.66 Aligned_cols=70 Identities=21% Similarity=0.451 Sum_probs=65.4
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCC---CCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP---KPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~---~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
.+.++.||.+++|+||||+|++|++|++.|||+|+|.+. .+++.+|.|+|+|++++++.|+.||.+++.+
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 75 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999874 3577899999999999999999999999876
No 19
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.64 E-value=2e-16 Score=116.04 Aligned_cols=74 Identities=28% Similarity=0.505 Sum_probs=66.2
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++++|+||.+++|.||||||++||+|+++|||+|+|.+ .++.+.+|.|+|+|++++|.+|..+|.+++.+.
T Consensus 2 ~~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~-----~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 2 AQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN-----PVEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp -CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECC-----CCTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcC-----CCCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 35688999999999999999999999999999999999964 234578999999999999999999999998763
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.64 E-value=4.1e-16 Score=114.42 Aligned_cols=74 Identities=24% Similarity=0.408 Sum_probs=64.3
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHh
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e 102 (318)
..+++|+||.+.+|.||||||++||+|+++|||+|+|.+.++ .++++.+|.|+|+|++++|.+|..+|.+++.+
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~--~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE--FLPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTC--CSTTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCC--CCCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 367899999999999999999999999999999999975422 22346789999999999999999999988754
No 21
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.64 E-value=7.2e-16 Score=114.77 Aligned_cols=74 Identities=20% Similarity=0.517 Sum_probs=66.9
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+. ++.+.+|.|+|+|++++|.+|..+|.+++.+.
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999999632 23467899999999999999999999999886
No 22
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=4.1e-16 Score=121.53 Aligned_cols=71 Identities=17% Similarity=0.309 Sum_probs=65.8
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.+..+.+.||.|+|+|+++++++|+.||++++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999987666778999999999999999999999999763
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.63 E-value=3.4e-16 Score=116.58 Aligned_cols=74 Identities=27% Similarity=0.508 Sum_probs=65.6
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++++|+||.+++|.||||||++||+|+++|||+|+|.+. ++.+.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999999999999999999642 24468999999999999999999999998775
No 24
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=6.7e-16 Score=120.72 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=64.7
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCC---CCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK---PGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~---~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. .+..+|.|+|+|+++++++|+.||+++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999998753 3457899999999999999999999998764
No 25
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.61 E-value=9.7e-16 Score=117.03 Aligned_cols=73 Identities=15% Similarity=0.328 Sum_probs=66.7
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCC--CCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKP--GATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~--~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+ ...+|.|+|+|++++++.|+.||++++.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999999999999999987533 457999999999999999999999999763
No 26
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.61 E-value=2.4e-15 Score=112.72 Aligned_cols=71 Identities=13% Similarity=0.254 Sum_probs=64.7
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCC--CCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK--PGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~--~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
..+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. +.+.||.|+|+|++++++.|+.+|.+++.+
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999999999998753 357899999999999999999999998853
No 27
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.3e-16 Score=114.71 Aligned_cols=69 Identities=26% Similarity=0.348 Sum_probs=62.6
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+.+|.||.+++|.||||+|++||+|+++|||+|+|.... +++.|+|+|+++++++|+++|.+++..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~---~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRD---KEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSS---SCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCC---CCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999997532 368999999999999999999998764
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.60 E-value=1.2e-15 Score=115.31 Aligned_cols=75 Identities=20% Similarity=0.503 Sum_probs=67.8
Q ss_pred CCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 24 ~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
....++++|+||.+++|.||||+|++||+|+++|||+|+|.+. ++.+.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3568999999999999999999999999999999999999632 23467999999999999999999999999886
No 29
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.60 E-value=1.1e-15 Score=115.08 Aligned_cols=74 Identities=24% Similarity=0.410 Sum_probs=65.8
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
++++|+||.+.+|.||||||++||+|+++|||+|+|.+.++ .++++.+|.|+|+|++++|.+|..+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGE--FLPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTC--BSTTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCC--CCCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 57899999999999999999999999999999999975422 223467899999999999999999999999875
No 30
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.58 E-value=5.3e-15 Score=110.83 Aligned_cols=74 Identities=20% Similarity=0.437 Sum_probs=64.8
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHh
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e 102 (318)
...+.+|+||.+++|.||||||++||+|+++|||+|+|.+.... ..+.||.|.|+|+++++.+|+.+|.++++|
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 45789999999999999999999999999999999999753221 236799999999999999999999988764
No 31
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=113.68 Aligned_cols=70 Identities=17% Similarity=0.249 Sum_probs=63.2
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e 102 (318)
...++++|.||.+++|+||||+|++||+||++|||+|+|.+. ..+++|+|+|++++|++|..+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 356889999999999999999999999999999999999643 2478999999999999999999997665
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.3e-15 Score=116.74 Aligned_cols=73 Identities=21% Similarity=0.396 Sum_probs=64.2
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
+++|+||.+++|+||||+|++||+|+++|||+|+|.+.. .+ .....+|+|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999996432 22 23357899999999999999999999988775
No 33
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.57 E-value=4.4e-15 Score=112.93 Aligned_cols=74 Identities=22% Similarity=0.401 Sum_probs=66.9
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++++|+||.+.+|.||||+|++||+|+++|||+|+|.+.. ....+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999999999999999996432 2357899999999999999999999999885
No 34
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.57 E-value=6.9e-15 Score=114.38 Aligned_cols=71 Identities=21% Similarity=0.350 Sum_probs=64.9
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCC--CCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPG--ATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~--~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
..+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..++ +.+|.|+|+|+++++++|+.||.+++..
T Consensus 14 p~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 14 PVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAKHLILEKVSE 86 (104)
T ss_dssp EEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999999999999999999999875443 3689999999999999999999999864
No 35
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.56 E-value=3.6e-15 Score=113.83 Aligned_cols=76 Identities=16% Similarity=0.379 Sum_probs=66.5
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++++|+||.+++|.||||+|++||+|+++|||+|+|.+.... ....+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 356899999999999999999999999999999999999643211 1247899999999999999999999999874
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.54 E-value=1.6e-14 Score=112.36 Aligned_cols=77 Identities=22% Similarity=0.388 Sum_probs=67.2
Q ss_pred CCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 24 PGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 24 ~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...+++++|+||.+++|.||||||++||+|+++|||+|+|.+... . ..+.+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~-~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE--G-TLLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC--C-SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC--C-CCCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 356789999999999999999999999999999999999975321 1 1246899999999999999999999999775
No 37
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-14 Score=113.28 Aligned_cols=72 Identities=19% Similarity=0.382 Sum_probs=63.9
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
..+++|+||.+++|.||||+|++||+|+++|||+|+|.+.+ ..+.||+|+|+|++++|++|+.+|.+++.+.
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----GTGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34789999999999999999999999999999999996432 2356899999999999999999999999886
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.51 E-value=2.8e-14 Score=119.39 Aligned_cols=74 Identities=31% Similarity=0.524 Sum_probs=66.6
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
..++++|+||.+++|+||||||++||+|+++|||+|+|.+ +..| .+.++.|+|+|++++|.+|+.+|.+++.|+
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~-~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 160 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAG-DMLP---NSTERAITIAGIPQSIIECVKQICVVMLET 160 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCC-CCST---TCCEEEEEEEECHHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECC-CCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcC
Confidence 4689999999999999999999999999999999999964 3333 468999999999999999999999998873
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.51 E-value=3e-14 Score=121.33 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=65.6
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
.++++|+||.+++|+||||+|++||+|+++|||+|+|.+.+. ++.+.+|.|+|+|+.++|.+|+.+|.++|+++
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GINLQNRVVTVSGEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEESSHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999999999999975432 34467899999999999999999999999986
No 40
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=3e-14 Score=108.72 Aligned_cols=76 Identities=12% Similarity=0.199 Sum_probs=67.7
Q ss_pred ccCCCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHH
Q 021032 21 GFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRL 100 (318)
Q Consensus 21 ~~e~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l 100 (318)
+.+....++.+|.||...+|.||||||++||+|+++|||+|+|.+.+ +.++.|+|+|+.++|.+|..+|..++
T Consensus 10 v~~l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~ 82 (94)
T 2cte_A 10 VARLQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLIS 82 (94)
T ss_dssp CCCCCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHhCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHh
Confidence 34456789999999999999999999999999999999999996431 24689999999999999999999999
Q ss_pred Hhh
Q 021032 101 RET 103 (318)
Q Consensus 101 ~e~ 103 (318)
.+.
T Consensus 83 ~~~ 85 (94)
T 2cte_A 83 AEQ 85 (94)
T ss_dssp HHH
T ss_pred hcc
Confidence 886
No 41
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=3.8e-14 Score=108.21 Aligned_cols=80 Identities=21% Similarity=0.236 Sum_probs=70.5
Q ss_pred hhccCCCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHH
Q 021032 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITS 98 (318)
Q Consensus 19 ~~~~e~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~ 98 (318)
+++.+....+++.|.||..++|.||||||++||+|+++|||+|+|.... ...+|.|+|+|..++|.+|+.+|..
T Consensus 8 ~iv~~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~ 81 (95)
T 2ctm_A 8 RIVGELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILN 81 (95)
T ss_dssp CCCCCTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHhhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHH
Confidence 4455678899999999999999999999999999999999999996431 1347899999999999999999999
Q ss_pred HHHhhc
Q 021032 99 RLRETI 104 (318)
Q Consensus 99 ~l~e~~ 104 (318)
++.+..
T Consensus 82 i~~e~~ 87 (95)
T 2ctm_A 82 LEEEYL 87 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998874
No 42
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.50 E-value=3.2e-14 Score=102.82 Aligned_cols=67 Identities=13% Similarity=0.308 Sum_probs=61.0
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFI 312 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i 312 (318)
..+.++.||.+++|.|||++|++|++|+++|||+|+|.++ +..+|.|+|+|+++++++|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~--g~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD--SEKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC--CSSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC--CCcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999753 347899999999999999999998764
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.49 E-value=6.3e-14 Score=107.46 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=64.8
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCC-CCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK-PGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~-~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+..|.||.+++|.||||+|++|++|+++|||+|+|.+.. +...+|.|+|+|+++++++|+.+|..++..
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999997653 234789999999999999999999998864
No 44
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.47 E-value=2.5e-13 Score=113.94 Aligned_cols=95 Identities=26% Similarity=0.390 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhhcc---CCCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEE
Q 021032 6 AQDAVMRVHSRIAEIGF---EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQV 82 (318)
Q Consensus 6 a~~a~~~v~~~i~~~~~---e~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I 82 (318)
+..|...+++.+.+... .....++++|+||.+++|+||||||++||+|+++|||+|+|.. +..|. ...++.|+|
T Consensus 60 v~~A~~~I~~~~~e~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~-~~~~~--~~~~~~v~I 136 (163)
T 3krm_A 60 QFKAQGRIYGKLKEENFFGPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPR-DQTPD--ENDQVIVKI 136 (163)
T ss_dssp HHHHHHHHHHHHHHTTSSCSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCT-TCCCC--TTSEEEEEE
T ss_pred HHHHHHHHHHHHhcccccccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECC-CCCCC--CCCceEEEE
Confidence 34555666666655421 1234678899999999999999999999999999999999964 44443 233458999
Q ss_pred EecHHHHHHHHHHHHHHHHhh
Q 021032 83 IGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 83 ~G~~~~V~~A~~~I~~~l~e~ 103 (318)
+|++++|.+|..+|.+++++.
T Consensus 137 ~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 137 IGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp EECHHHHHHHHHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999886
No 45
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=8.7e-14 Score=106.12 Aligned_cols=70 Identities=17% Similarity=0.301 Sum_probs=63.4
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+.+|.||.+++|.|||++|.+|++|+++|||+|+|++.. ..++.|+|+|+++++++|+.+|.+++.+
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~--~~~~~V~I~G~~e~v~~A~~~I~~i~~~ 84 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD--DPSNQIKITGTKEGIEKARHEVLLISAE 84 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT--SSCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC--CCCCeEEEEECHHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999999999999997532 3468999999999999999999999875
No 46
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.46 E-value=1.2e-13 Score=105.83 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=65.1
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
..++++|.||...+|.||||||++||+|+++|||+|+|.+... ++..+|.|+|+|..+++.+|..+|..++.+.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~----~~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD----GNQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT----CSSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC----CCCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999965321 2246899999999999999999999988774
No 47
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=1.6e-13 Score=104.78 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=63.8
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+.++.||.+++|.|||++|++|++|+++|||+|+|.+.. ..++|.|+|+|+++++++|+.+|.+++.+
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g-~~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG-APDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT-CSCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC-CCCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999999996532 23578999999999999999999999875
No 48
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.44 E-value=1.2e-13 Score=99.74 Aligned_cols=67 Identities=15% Similarity=0.295 Sum_probs=59.9
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHH
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSR 99 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~ 99 (318)
...+..|.||...+|.||||||++|++|+++|||+|+|.+.+ ..+|.|+|+|+.+++.+|+.+|..+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999996431 3578999999999999999999764
No 49
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.42 E-value=2.5e-13 Score=115.22 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=65.9
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..++..||.|+|+|+++++++|+.+|.+++..
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~ 72 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRS 72 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 6789999999999999999999999999999999998766678899999999999999999999999875
No 50
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=4.2e-13 Score=104.10 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=62.4
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
..+.++.||.+++|.|||++|++|++|+++|||+|+|.+. +...+.|+|+|++++++.|+.+|..++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~--g~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP--ELQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT--TTTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC--CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 3789999999999999999999999999999999999753 33467999999999999999999998865
No 51
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.37 E-value=1.1e-12 Score=109.99 Aligned_cols=71 Identities=13% Similarity=0.248 Sum_probs=64.7
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCC--CCCCCeEEEEEcCHHHHHHHHHHHHHHHHcC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPK--PGATEGVVMVSGTSDQMRAAQSLIHAFILCG 315 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~--~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~~ 315 (318)
.+.++.||.+++|+||||+|++|++|++.|||+|+|.+.. ++..+|.|+|+|+++++..|+.+|.+++.+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~ 74 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACEMVMDILRER 74 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999997543 4577999999999999999999999998753
No 52
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.34 E-value=1.4e-12 Score=101.22 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=63.1
Q ss_pred CeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 26 QAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 26 ~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
.+++..|.||...+|.|||+||++||+|+++|||+|+|.+.. ...+.|+|+|..++|.+|+.+|..++.+.
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~ 85 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKEL 85 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhH
Confidence 468899999999999999999999999999999999996431 23569999999999999999999988664
No 53
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=2.1e-12 Score=98.36 Aligned_cols=78 Identities=14% Similarity=0.205 Sum_probs=69.4
Q ss_pred hhccCCCCeeEEEEEEecccceeeeCCCCchHHHHHHHh-CCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHH
Q 021032 19 EIGFEPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRAT-GASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHIT 97 (318)
Q Consensus 19 ~~~~e~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~t-Ga~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~ 97 (318)
++..|.++.++..|.||...++.|||+||.+||+|+++| ||+|+|... ++..+.|+|.|+.++|.+|+.+|.
T Consensus 8 ~i~~e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~ 80 (95)
T 2ctj_A 8 SIQKDLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLL 80 (95)
T ss_dssp CCCCCCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHH
Confidence 445677889999999999999999999999999999999 999999532 245679999999999999999999
Q ss_pred HHHHhh
Q 021032 98 SRLRET 103 (318)
Q Consensus 98 ~~l~e~ 103 (318)
.++.+.
T Consensus 81 ~iv~e~ 86 (95)
T 2ctj_A 81 HLAEEK 86 (95)
T ss_dssp HHHHHH
T ss_pred HHHhhh
Confidence 999875
No 54
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.27 E-value=6.5e-12 Score=95.66 Aligned_cols=70 Identities=17% Similarity=0.262 Sum_probs=63.8
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHh-CCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQIS-GANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~S-GA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
...+..|.||.++++.|||++|.+|++|+++| ||+|+|.+ +++..+.|+|+|+.+++++|+.+|+.++..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~--~g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPV--EGSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCC--TTTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCC--CCCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 45788999999999999999999999999999 99999954 456678999999999999999999999875
No 55
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=1.5e-11 Score=94.91 Aligned_cols=65 Identities=20% Similarity=0.341 Sum_probs=60.2
Q ss_pred eEEEEEecccccccccccccchHHHHHHH-hCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQI-SGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~-SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
.+.+|.||.++++.|||++|++|++|++. ++++|.+++ .++.|+|+|++++|.+|+..|+.++++
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~-----~~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE-----GEDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS-----SSCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC-----CCCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 599999965 467999999999999999999999875
No 56
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=1.3e-11 Score=95.24 Aligned_cols=69 Identities=13% Similarity=0.192 Sum_probs=62.0
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHH-hCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRA-TGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~-tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
...++.+|.||+.+++.||||+|++||+|+++ ++++|+|+. .++.|+|+|+++.|.+|..+|..++.+.
T Consensus 24 ~~~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 24 NSFTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CCCEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred cCeEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999999999999999997 589999853 3689999999999999999999998775
No 57
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.20 E-value=2.3e-11 Score=99.89 Aligned_cols=72 Identities=15% Similarity=0.326 Sum_probs=60.4
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHHhCC-eEEEecCCCCCCCCCCCCc--eEEEEecHHHHHHHHHHHHHHHHh
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGA-SIRVFPKDQAPRCGSPHDE--IVQVIGNYHSVQDALFHITSRLRE 102 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa-~I~i~~~~~~p~~~~~~er--~V~I~G~~~~V~~A~~~I~~~l~e 102 (318)
++++.||.+++|++|||+|.+||+|++.||| +|+|.+.++... ...++ .|+|+|++++|++|..+|..+|.+
T Consensus 68 e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 68 EDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHHHHHHh
Confidence 3899999999999999999999999999997 999986433211 12344 489999999999999999998865
No 58
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.10 E-value=8.1e-11 Score=88.26 Aligned_cols=65 Identities=18% Similarity=0.393 Sum_probs=58.2
Q ss_pred cceEEEEEecccccccccccccchHHHHHHHhCCE-EEEcCCCCCCCCeEEEEEc-CHHHHHHHHHHHHHHH
Q 021032 243 TSTTIEVVIPQLYMAHVYGENNSNLSHIRQISGAN-VVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAFI 312 (318)
Q Consensus 243 ~~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~-I~i~~~~~~~~er~v~I~G-t~~~v~~A~~lI~~~i 312 (318)
.....++.||.+++|.|||++|.+|++|++.|||+ |.|.+ ++++|+|.| +.+++++|+.+|..+.
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e-----ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE-----DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc-----CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 35789999999999999999999999999999998 99963 358999999 8999999999997543
No 59
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=5.4e-10 Score=83.76 Aligned_cols=63 Identities=17% Similarity=0.321 Sum_probs=56.6
Q ss_pred CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCe-EEEecCCCCCCCCCCCCceEEEEe-cHHHHHHHHHHHH
Q 021032 25 GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGAS-IRVFPKDQAPRCGSPHDEIVQVIG-NYHSVQDALFHIT 97 (318)
Q Consensus 25 ~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~-I~i~~~~~~p~~~~~~er~V~I~G-~~~~V~~A~~~I~ 97 (318)
...+...|.||...+|.+||+||++||+|+++|||+ |.|.. .+..|+|.| +.+++.+|+.+|.
T Consensus 12 ~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~ 76 (91)
T 2cpq_A 12 AAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLE 76 (91)
T ss_dssp SCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHS
T ss_pred cCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHH
Confidence 456889999999999999999999999999999998 99942 359999999 8999999998884
No 60
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.94 E-value=7.2e-10 Score=103.70 Aligned_cols=70 Identities=17% Similarity=0.245 Sum_probs=62.0
Q ss_pred CcceEEEEEeccccccccccccc--chHHHHHHHhCCEEEEcCCC-----CCCCCeEEEEEcCHHHHHHHHHHHHHH
Q 021032 242 LTSTTIEVVIPQLYMAHVYGENN--SNLSHIRQISGANVVVNDPK-----PGATEGVVMVSGTSDQMRAAQSLIHAF 311 (318)
Q Consensus 242 ~~~~t~~v~IP~~~vG~IIGk~G--~~Ik~Ir~~SGA~I~i~~~~-----~~~~er~v~I~Gt~~~v~~A~~lI~~~ 311 (318)
.+.+|.++.||..+++.||||+| ++|++|+++|||+|++.+.. +......|+|+|.++.|++|+..|.++
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l 103 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRN 103 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHS
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhc
Confidence 35789999999999999999999 99999999999999997654 124557899999999999999999874
No 61
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.88 E-value=5.4e-09 Score=84.04 Aligned_cols=73 Identities=18% Similarity=0.270 Sum_probs=61.7
Q ss_pred CcceEEEEEeccc------ccccccccccchHHHHHHHhCCEEEEcCCC----------------CCCCCeEEEEEc-CH
Q 021032 242 LTSTTIEVVIPQL------YMAHVYGENNSNLSHIRQISGANVVVNDPK----------------PGATEGVVMVSG-TS 298 (318)
Q Consensus 242 ~~~~t~~v~IP~~------~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~----------------~~~~er~v~I~G-t~ 298 (318)
....+..|.||.+ ++|.|||.+|.+||+|+++|||+|.|...- ....+-.|.|++ +.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 3468899999987 899999999999999999999999996421 112366899999 68
Q ss_pred HHHHHHHHHHHHHHHc
Q 021032 299 DQMRAAQSLIHAFILC 314 (318)
Q Consensus 299 ~~v~~A~~lI~~~i~~ 314 (318)
+.+++|..+|..++..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999965
No 62
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.82 E-value=1.1e-08 Score=82.36 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=62.9
Q ss_pred CeeEEEEEEecc------cceeeeCCCCchHHHHHHHhCCeEEEecCCCCC-----------CCCCCCCceEEEEe-cHH
Q 021032 26 QAVVARLLVHSQ------QIGCLLGRGGHIVSEMRRATGASIRVFPKDQAP-----------RCGSPHDEIVQVIG-NYH 87 (318)
Q Consensus 26 ~~~~~rllVp~~------~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p-----------~~~~~~er~V~I~G-~~~ 87 (318)
..++.+|.||.. ++|.|||.+|.+||+|+++|||+|.|..+.... ......+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 468899999988 899999999999999999999999997543211 11123356788999 578
Q ss_pred HHHHHHHHHHHHHHhh
Q 021032 88 SVQDALFHITSRLRET 103 (318)
Q Consensus 88 ~V~~A~~~I~~~l~e~ 103 (318)
++.+|+..|..+|.+.
T Consensus 85 ~~~~A~~~I~~ll~~~ 100 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQG 100 (131)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999998774
No 63
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=1.9e-08 Score=79.38 Aligned_cols=71 Identities=18% Similarity=0.194 Sum_probs=57.6
Q ss_pred ceEEEEEeccc-------ccccccccccchHHHHHHHhCCEEEEcCCC----------CCCCCeEEEEEc-CHHHHHHHH
Q 021032 244 STTIEVVIPQL-------YMAHVYGENNSNLSHIRQISGANVVVNDPK----------PGATEGVVMVSG-TSDQMRAAQ 305 (318)
Q Consensus 244 ~~t~~v~IP~~-------~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~----------~~~~er~v~I~G-t~~~v~~A~ 305 (318)
..+.+|.||.+ ++|.|||.+|.+||+|+++|||+|.|...- +..++-.|.|++ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46777888764 889999999999999999999999996321 112345788887 689999999
Q ss_pred HHHHHHHHc
Q 021032 306 SLIHAFILC 314 (318)
Q Consensus 306 ~lI~~~i~~ 314 (318)
.||.+++..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999999874
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=3.6e-08 Score=77.73 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=58.4
Q ss_pred CeeEEEEEEecc-------cceeeeCCCCchHHHHHHHhCCeEEEecCCCC-----CCCCCCCCceEEEEe-cHHHHHHH
Q 021032 26 QAVVARLLVHSQ-------QIGCLLGRGGHIVSEMRRATGASIRVFPKDQA-----PRCGSPHDEIVQVIG-NYHSVQDA 92 (318)
Q Consensus 26 ~~~~~rllVp~~-------~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~-----p~~~~~~er~V~I~G-~~~~V~~A 92 (318)
..++.||.||-. ++|.|||++|.+||+|+++|||+|.|..+... .......+-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 357789999865 69999999999999999999999999643211 000112344677776 58999999
Q ss_pred HHHHHHHHHh
Q 021032 93 LFHITSRLRE 102 (318)
Q Consensus 93 ~~~I~~~l~e 102 (318)
+.+|..++.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999888865
No 65
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.57 E-value=2.3e-08 Score=80.86 Aligned_cols=75 Identities=21% Similarity=0.269 Sum_probs=55.0
Q ss_pred eeEEEEEEeccc------ceeeeCCCCchHHHHHHHhCCeEEEecCCCC------------CCCC-CCCCceEEEEec-H
Q 021032 27 AVVARLLVHSQQ------IGCLLGRGGHIVSEMRRATGASIRVFPKDQA------------PRCG-SPHDEIVQVIGN-Y 86 (318)
Q Consensus 27 ~~~~rllVp~~~------vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~------------p~~~-~~~er~V~I~G~-~ 86 (318)
+++-||.||.+. +|.|||.+|.++|+|+++|||+|.|..+.+. |.+. .+.+--|.|+++ .
T Consensus 1 ~~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~ 80 (140)
T 2bl5_A 1 QLQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDA 80 (140)
T ss_dssp CEEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSC
T ss_pred CceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCc
Confidence 357789999766 9999999999999999999999999854321 1111 122236889884 3
Q ss_pred -----HHHHHHHHHHHHHHH
Q 021032 87 -----HSVQDALFHITSRLR 101 (318)
Q Consensus 87 -----~~V~~A~~~I~~~l~ 101 (318)
..+.+|+..|..+|.
T Consensus 81 ~~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 81 QNRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHSS
T ss_pred hhhHHHHHHHHHHHHHHHCC
Confidence 268888888877664
No 66
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.54 E-value=9.4e-08 Score=83.47 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=57.3
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcC-----HHHHHHHHHHHHHHH
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT-----SDQMRAAQSLIHAFI 312 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt-----~~~v~~A~~lI~~~i 312 (318)
.+.++.||.+.+|.|||++|.+|+.|++.|||+|+|+. .++.|+|+|+ ++++++|+.+|.+++
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~-----~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS-----ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT-----TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc-----CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 46789999999999999999999999999999999952 3678999986 699999999999987
No 67
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=98.40 E-value=4.8e-07 Score=77.16 Aligned_cols=63 Identities=19% Similarity=0.252 Sum_probs=58.0
Q ss_pred EEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEE-----cCHHHHHHHHHHHHHHHH
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVS-----GTSDQMRAAQSLIHAFIL 313 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~-----Gt~~~v~~A~~lI~~~i~ 313 (318)
..++.||.+.+|.|||++|+.++.|++.+|++|+++ ..++.|+|+ |+|.++++|+.+|.++..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id-----~~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVD-----TENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEE-----TTTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEE-----cCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999996 357889999 999999999999988765
No 68
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.39 E-value=3.2e-07 Score=91.69 Aligned_cols=85 Identities=20% Similarity=0.221 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHHhhccCC------CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCc
Q 021032 5 PAQDAVMRVHSRIAEIGFEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78 (318)
Q Consensus 5 ~a~~a~~~v~~~i~~~~~e~------~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er 78 (318)
-|.++..+|++.+.+...+. -.+....|-||...+|.|||+||++||+|+++|||+|.|. .+.
T Consensus 538 ~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G 606 (630)
T 3u1k_A 538 QASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEE 606 (630)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCc
Confidence 36777888887777765432 4577899999999999999999999999999999999993 368
Q ss_pred eEEEEec-HHHHHHHHHHHHHHH
Q 021032 79 IVQVIGN-YHSVQDALFHITSRL 100 (318)
Q Consensus 79 ~V~I~G~-~~~V~~A~~~I~~~l 100 (318)
.|.|.|. .+++.+|+..|..++
T Consensus 607 ~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 607 TFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEESSHHHHHHHHHHTTC--
T ss_pred EEEEEeCCHHHHHHHHHHHHHHh
Confidence 8999996 678899998886543
No 69
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.38 E-value=2.9e-07 Score=74.44 Aligned_cols=69 Identities=9% Similarity=0.256 Sum_probs=53.8
Q ss_pred eEEEEEecc------cccccccccccchHHHHHHHhCCEEEEcCCCC------------------CCCCeEEEEEcC-HH
Q 021032 245 TTIEVVIPQ------LYMAHVYGENNSNLSHIRQISGANVVVNDPKP------------------GATEGVVMVSGT-SD 299 (318)
Q Consensus 245 ~t~~v~IP~------~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~------------------~~~er~v~I~Gt-~~ 299 (318)
.+.+|.||. +++|+|||.+|.++|+|+++|||+|.|...-. ...+-.|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 456777875 45999999999999999999999999975321 112237889983 43
Q ss_pred -----HHHHHHHHHHHHHH
Q 021032 300 -----QMRAAQSLIHAFIL 313 (318)
Q Consensus 300 -----~v~~A~~lI~~~i~ 313 (318)
.++.|..+|..++.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 79999999999876
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=98.34 E-value=1.8e-06 Score=68.54 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=61.0
Q ss_pred EEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHHHHc
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAFILC 314 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~i~~ 314 (318)
-..+.+..+.++.|||++|+.|+.|++.|.|.|+|..-.+ +++..|+|.|++..-+.|+.||+.+...
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s-~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP-ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT-TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC-CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 3667799999999999999999999999999999987644 4788999999999999999999987653
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.08 E-value=1.9e-06 Score=86.17 Aligned_cols=62 Identities=19% Similarity=0.242 Sum_probs=54.6
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT-SDQMRAAQSLIHAFI 312 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt-~~~v~~A~~lI~~~i 312 (318)
....+.||.+.+|.|||++|.+||+|+++|||+|+|. ++..|.|.|+ ++++++|+.+|.+++
T Consensus 567 ~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 567 VVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp EEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred eEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999995 3578999996 689999999998765
No 72
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.98 E-value=1.6e-05 Score=63.19 Aligned_cols=68 Identities=16% Similarity=0.176 Sum_probs=58.3
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHh
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRE 102 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e 102 (318)
.+.|.|...+++.|||++|+.|++|++.|++.|+|..- .++.+--|+|.|++..=.+|..+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~------~s~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVW------GPERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECC------CTTSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEecc------CCCCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999999999999999643 124577899999999999999988776643
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.86 E-value=6e-06 Score=83.52 Aligned_cols=88 Identities=19% Similarity=0.310 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhhccCC------CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCc
Q 021032 5 PAQDAVMRVHSRIAEIGFEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78 (318)
Q Consensus 5 ~a~~a~~~v~~~i~~~~~e~------~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er 78 (318)
-|.++..+|++.+.+...+. ..+....|-||...+|.|||+||.+||+|+++||++|.|. .+.
T Consensus 541 ~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG 609 (726)
T 4aid_A 541 QAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDG 609 (726)
T ss_dssp HHHHHHHHHHHHHHTTCSSCCSSCCSSCCC--------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCc
Confidence 46778888888877765432 3466788999999999999999999999999999999993 356
Q ss_pred eEEEEec-HHHHHHHHHHHHHHHHhh
Q 021032 79 IVQVIGN-YHSVQDALFHITSRLRET 103 (318)
Q Consensus 79 ~V~I~G~-~~~V~~A~~~I~~~l~e~ 103 (318)
.|.|.+. .+++.+|+..|..++.+.
T Consensus 610 ~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 610 VVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp ----CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 7777775 788899999888777653
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.82 E-value=3e-05 Score=62.93 Aligned_cols=64 Identities=23% Similarity=0.333 Sum_probs=48.9
Q ss_pred CCChHHHHHHHHHHHHHhhcc----CCCCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEec
Q 021032 2 RHSPAQDAVMRVHSRIAEIGF----EPGQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFP 65 (318)
Q Consensus 2 ~~s~a~~a~~~v~~~i~~~~~----e~~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~ 65 (318)
+++..+=..+.+|+.+..... ..++.-.+.++|+...+|..||++|++|+.|+++.|-+|.|..
T Consensus 6 ~l~~~~~r~i~lfe~~t~a~~~dcvid~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 6 RITLEELRYISVFHSITGVTAYRCIVDEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp -CCHHHHHHHHHHHHHHSCCEEEEEEEGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred EeCHHHHHHHHHHHHHhCCCeeeEEEeCCCCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 355566667777877755421 1122345889999999999999999999999999999999974
No 75
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.33 E-value=4e-05 Score=77.51 Aligned_cols=63 Identities=27% Similarity=0.357 Sum_probs=11.6
Q ss_pred EEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHHHc
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT-SDQMRAAQSLIHAFILC 314 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt-~~~v~~A~~lI~~~i~~ 314 (318)
...+.||.+.++.|||+||.+|+.|.++||++|.|. ++..|.|.++ .+++++|+.+|..++..
T Consensus 571 ~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~------ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 571 IETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN------DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred EEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE------CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 567789999999999999999999999999999995 3567888885 88999999999887653
No 76
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=96.44 E-value=0.001 Score=67.43 Aligned_cols=86 Identities=16% Similarity=0.298 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHhhccCC------CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCc
Q 021032 5 PAQDAVMRVHSRIAEIGFEP------GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE 78 (318)
Q Consensus 5 ~a~~a~~~v~~~i~~~~~e~------~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er 78 (318)
-|.++..++++.+.+...+. -.+....+-||...++.+||+||.+|++|.++||+.|.|- .+.
T Consensus 531 ~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-----------~dg 599 (723)
T 3cdi_A 531 QAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-----------DDG 599 (723)
T ss_dssp HHHHHHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEec-----------CCc
Confidence 36677778887777665332 3456788889999999999999999999999999999983 256
Q ss_pred eEEEEec-HHHHHHHHHHHHHHHH
Q 021032 79 IVQVIGN-YHSVQDALFHITSRLR 101 (318)
Q Consensus 79 ~V~I~G~-~~~V~~A~~~I~~~l~ 101 (318)
.|.|.+. .+.+.+|...|..+..
T Consensus 600 ~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 600 TVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ------------------------
T ss_pred cEEEecCCHHHHHHHHHHHHHHhh
Confidence 6777654 4566677666655443
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.18 E-value=0.0098 Score=52.35 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=36.0
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 283 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~ 283 (318)
.+..+.||.+..+.-|||+|.|++--.++||.+|.|...
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 468899999999999999999999999999999999643
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=96.14 E-value=0.01 Score=55.16 Aligned_cols=39 Identities=15% Similarity=0.348 Sum_probs=36.0
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDP 283 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~ 283 (318)
.+..+.||.+..+..|||+|.|++-..++||.+|.|...
T Consensus 307 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 307 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred cEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 478899999999999999999999999999999999643
No 79
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.37 E-value=0.0013 Score=67.01 Aligned_cols=83 Identities=18% Similarity=0.269 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHhhccCC-----CCeeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCce
Q 021032 5 PAQDAVMRVHSRIAEIGFEP-----GQAVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEI 79 (318)
Q Consensus 5 ~a~~a~~~v~~~i~~~~~e~-----~~~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~ 79 (318)
-|.++..+|++.+.+...+. ..+....|-||...+|-+||++|.+||+|++++|+.|.|. .+..
T Consensus 570 ~A~~~~~~I~~~m~~al~~~~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~-----------~dG~ 638 (757)
T 1e3p_A 570 QARDARLHILDVMMEAIDTPDEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIE-----------DDGT 638 (757)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCCCTTSCBCCCC------------------CTTCCCCCSCC------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEec-----------CCce
Confidence 36677777887777654332 2355567889999999999999999999999999999984 2456
Q ss_pred EEEEec-HHHHHHHHHHHHH
Q 021032 80 VQVIGN-YHSVQDALFHITS 98 (318)
Q Consensus 80 V~I~G~-~~~V~~A~~~I~~ 98 (318)
|.|... .+...+|...|..
T Consensus 639 v~Is~~~~~~~~~a~~~i~~ 658 (757)
T 1e3p_A 639 IYIGAADGPAAEAARATING 658 (757)
T ss_dssp -CCCBSSHHHHCC-------
T ss_pred EEEecCCHHHHHHHHHHHHH
Confidence 666653 4555566555544
No 80
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.09 E-value=0.0037 Score=63.38 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=0.0
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHHH
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT-SDQMRAAQSLIHAFIL 313 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt-~~~v~~A~~lI~~~i~ 313 (318)
....+.||.+.++.|||++|.+|+.|.+.+|+.|+|.+ +..|.|.+. .+.+++|+.+|..++.
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 35677899999999999999999999999999999853 567888775 5678888888776653
No 81
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.80 E-value=0.0028 Score=64.55 Aligned_cols=60 Identities=23% Similarity=0.448 Sum_probs=20.5
Q ss_pred EEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcC-HHHHHHHHHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGT-SDQMRAAQSLIHAFI 312 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt-~~~v~~A~~lI~~~i 312 (318)
..+.||.+.+|.+||++|.+|++|++.+|+.|+|.+ +..|.|+.. .+..++|+.+|..+.
T Consensus 600 ~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 600 ITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCC------------------CTTCCCCCSCC--------------CCCBSSHHHHCC---------
T ss_pred EEEEEChHHeehcccccceeeehhhHhhCCEEEecC------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 346699999999999999999999999999999952 567888885 567777877776654
No 82
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=91.30 E-value=0.16 Score=40.85 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=35.0
Q ss_pred eEEEEEecccccccccccccchHHHHHHHhCCEEEEcC
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVND 282 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~ 282 (318)
....+.|+...+|+.||++|++|+.|+++.|-+|+|-+
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~ 73 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVE 73 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEE
Confidence 57888999999999999999999999999999999854
No 83
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=87.97 E-value=0.31 Score=42.76 Aligned_cols=39 Identities=26% Similarity=0.306 Sum_probs=36.2
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecC
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~ 66 (318)
..+.+.||..+.+.-|||+|.+|+--..-||.+|.|.+.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 468899999999999999999999999999999999754
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=86.73 E-value=0.42 Score=43.98 Aligned_cols=40 Identities=30% Similarity=0.439 Sum_probs=36.6
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecC
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~ 66 (318)
...+.+.||..+.+.-|||+|.+++--..-||.+|.|.+.
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 3468899999999999999999999999999999999754
No 85
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=85.43 E-value=0.54 Score=43.31 Aligned_cols=38 Identities=13% Similarity=0.325 Sum_probs=35.4
Q ss_pred ceEEEEEecccccccccccccchHHHHHHHhCCEEEEc
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVN 281 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~ 281 (318)
..+..+.||.+..+.-|||+|.|++--.+.||.+|.|.
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~ 339 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIK 339 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEecee
Confidence 35788999999999999999999999999999999985
No 86
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=84.59 E-value=0.57 Score=43.39 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=36.8
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecC
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPK 66 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~ 66 (318)
...+.+.||..+.+..|||+|.+++-...-||.+|.|...
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 3468999999999999999999999999999999999754
No 87
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=83.15 E-value=0.4 Score=35.47 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=24.9
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
-.+++.|....-|.||||+|..|++|+.+
T Consensus 35 ~~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 35 TRTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp SCEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 34788899999999999999999988753
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=80.30 E-value=0.64 Score=37.68 Aligned_cols=67 Identities=9% Similarity=0.007 Sum_probs=44.3
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHHHHHHHHHHHHHHHHhhc
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYHSVQDALFHITSRLRETI 104 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~~V~~A~~~I~~~l~e~~ 104 (318)
++.+-+.....|.||||.|.|++.||--+...+.- . + ...-.+.|.|=.+.-++.+..++..+.+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~vn~--~-----~--~~~V~LDve~YRerReetL~~lA~~~A~kV 100 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWIHP--T-----Y--GYSIRLEISTFLQNQEKVMDTQLQSVIMTV 100 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHHHH--H-----H--SCEEEEEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHhhh--c-----C--CceEEEEhHHhHHHHHHHHHHHHHHHHHHH
Confidence 36666778899999999999999998554222211 0 0 011224466667777788888877777654
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=72.48 E-value=1.6 Score=32.22 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=23.1
Q ss_pred EEEEEecccccccccccccchHHHHHHH
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
..+|.|-...-|.||||+|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4667777778899999999999988764
No 90
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=70.36 E-value=2.8 Score=33.87 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=25.9
Q ss_pred eEEEEEecccccccccccccchHHHHHHHh
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQIS 274 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~S 274 (318)
.++.+.+-.+-.|.+|||.|.+++.|+-.+
T Consensus 33 ~~i~i~i~ged~glLIGK~G~TL~ALQyL~ 62 (152)
T 2pt7_G 33 GVLLIDIDGEDSALLIGEKGYRYKALSYLL 62 (152)
T ss_dssp TEEEEEEEEGGGTTTTCGGGHHHHHHHHHH
T ss_pred CEEEEEEecCCcceEECCCCcchHHHHHHH
Confidence 356677778899999999999999999876
No 91
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=66.64 E-value=18 Score=31.04 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=47.0
Q ss_pred EEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEcCHHHHHHHHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSGTSDQMRAAQSLIHAF 311 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~Gt~~~v~~A~~lI~~~ 311 (318)
.-+.++...+.+++|+++..++.|.+.+++.|-+- ....|-|.++.+....+...|+.+
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG------~NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG------QNGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC------TTSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE------CCcEEEEeCCchhHHHHHHHHHHH
Confidence 33578999999999999999999999999999993 345567999887666666666544
No 92
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=66.32 E-value=2.2 Score=38.20 Aligned_cols=37 Identities=14% Similarity=0.337 Sum_probs=29.5
Q ss_pred eeEEEEEEec-ccceeeeCCCCchHHHHH--------HHhCCeEEE
Q 021032 27 AVVARLLVHS-QQIGCLLGRGGHIVSEMR--------RATGASIRV 63 (318)
Q Consensus 27 ~~~~rllVp~-~~vG~IIGkgG~~Ik~I~--------e~tGa~I~i 63 (318)
.+...++|.. +|.+.||||+|+.||+|. +-.|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4667788885 699999999999999885 346777665
No 93
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=65.02 E-value=2.6 Score=36.57 Aligned_cols=29 Identities=14% Similarity=0.348 Sum_probs=24.9
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
.-+++.|....-|.||||+|..|++|+..
T Consensus 44 ~~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 44 TKTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp SCEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34788899999999999999999988744
No 94
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=61.91 E-value=2.7 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.662 Sum_probs=23.9
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRR 55 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e 55 (318)
--+++.|....-|.||||+|..|++|+.
T Consensus 40 ~~~~I~I~t~rPg~vIG~~G~~I~~L~~ 67 (210)
T 3j20_C 40 LGTKVIIFAANPGYVIGRGGRRIRELTR 67 (210)
T ss_dssp SCCEEEEEESCHHHHHCSSSHHHHHHHH
T ss_pred CeEEEEEEeCCCceEEcCCchhHHHHHH
Confidence 3467888888999999999999998864
No 95
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=60.22 E-value=2.7 Score=36.25 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=25.0
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
--+++.|....-|.||||+|+.|++|++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 45788899999999999999999988643
No 96
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=59.96 E-value=3.7 Score=35.71 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=25.4
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
.-+++.|....-|.||||+|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45888899999999999999999998754
No 97
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=58.46 E-value=36 Score=29.10 Aligned_cols=59 Identities=19% Similarity=0.193 Sum_probs=47.4
Q ss_pred EEEEecccccccccccccchHHHHHHHhCCEEEEcCCCCCCCCeEEEEEc-CHHHHHHHHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHAF 311 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~G-t~~~v~~A~~lI~~~ 311 (318)
.-+.++...+.+++|++|..+..|.+.++++|-+-. +..|-|.+ +++....+...|+.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~------NG~IWi~~~~~~~~~~~~~ai~~~ 209 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR------NGRIHLECPNEDLEAIAVMAIKII 209 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET------TTEEEEECSCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC------CCEEEEecCCHHHHHHHHHHHHHH
Confidence 445789999999999999999999988999999942 55667886 666777777777655
No 98
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=53.96 E-value=3 Score=35.44 Aligned_cols=35 Identities=23% Similarity=0.571 Sum_probs=27.7
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHH----HhCCeEEE
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRR----ATGASIRV 63 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e----~tGa~I~i 63 (318)
-+++.|....-|.||||+|+.|++|+. .++..++|
T Consensus 62 ~i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 62 SIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp SBCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred eEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 367778888889999999999998864 57766555
No 99
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=52.43 E-value=3.6 Score=35.40 Aligned_cols=66 Identities=8% Similarity=0.152 Sum_probs=41.5
Q ss_pred EEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCc-eEEEEecHHHHHHHHHHHHHHHHhh
Q 021032 30 ARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDE-IVQVIGNYHSVQDALFHITSRLRET 103 (318)
Q Consensus 30 ~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er-~V~I~G~~~~V~~A~~~I~~~l~e~ 103 (318)
+.+-|.....|.||||.|.+++.||.-+..-++-... ..-| .|.|.|=.+.-++.+..+...+.+.
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~--------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~k 160 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS--------DYIRVKLDTENYRERRKETLETLAKNIAYK 160 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS--------SCCEEEEESTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC--------CceEEEEecchHHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999999999999877644432111 1112 3445565655556666555555443
No 100
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=51.30 E-value=3.5 Score=35.69 Aligned_cols=36 Identities=22% Similarity=0.540 Sum_probs=27.4
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHH----HhCCeEEE
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRR----ATGASIRV 63 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e----~tGa~I~i 63 (318)
--+++.|....-|.||||+|+.|++|+. .++..++|
T Consensus 62 ~~i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~I 101 (233)
T 3i1m_C 62 KSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 101 (233)
T ss_dssp SCBCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBCC
T ss_pred CeEEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 3467778888899999999999998874 46654443
No 101
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=51.10 E-value=3.3 Score=36.00 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=25.2
Q ss_pred eEEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
.-+++.|....-|.||||+|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 45788888899999999999999998765
No 102
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=48.48 E-value=5.7 Score=34.48 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=23.1
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
.+++.|....-|.||||+|+.|++|++.
T Consensus 63 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 63 NVAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp CBCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred eEEEEEEeCCCcceecCCchHHHHHHHH
Confidence 3556777788899999999999988754
No 103
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=48.30 E-value=9.1 Score=34.08 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred ceEEEEEecc-cccccccccccchHHHHHH--------HhCCEEEE
Q 021032 244 STTIEVVIPQ-LYMAHVYGENNSNLSHIRQ--------ISGANVVV 280 (318)
Q Consensus 244 ~~t~~v~IP~-~~vG~IIGk~G~~Ik~Ir~--------~SGA~I~i 280 (318)
.....+.|.. +.-+-||||+|+.||+|.. ..|++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 4567777876 5679999999999998765 45665554
No 104
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=47.72 E-value=4.8 Score=34.44 Aligned_cols=28 Identities=11% Similarity=0.186 Sum_probs=22.8
Q ss_pred EEEEEEecccceeeeCCCCchHHHHHHH
Q 021032 29 VARLLVHSQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 29 ~~rllVp~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
.+++.|....-|.||||+|..|++|+++
T Consensus 71 ~i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 71 LIQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CBCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred eEEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 3566777778899999999999998754
No 105
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=43.61 E-value=9.5 Score=33.02 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=23.0
Q ss_pred EEEEEecccccccccccccchHHHHHHH
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3667777778899999999999988754
No 106
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=43.38 E-value=4 Score=36.45 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=25.5
Q ss_pred EEEEEe-cccceeeeCCCCchHHHHH--------HHhCCeEEE
Q 021032 30 ARLLVH-SQQIGCLLGRGGHIVSEMR--------RATGASIRV 63 (318)
Q Consensus 30 ~rllVp-~~~vG~IIGkgG~~Ik~I~--------e~tGa~I~i 63 (318)
..++|. .+|.+.||||+|+.||+|. +-.|++|.+
T Consensus 232 ~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 232 AILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 445555 4789999999999999875 446777665
No 107
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=43.22 E-value=7.7 Score=33.34 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.1
Q ss_pred EEEEEecccccccccccccchHHHHHHHhCC
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQISGA 276 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~SGA 276 (318)
++.+.|..+..|.+|||.|.+++.||..+..
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~ 123 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSL 123 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHH
Confidence 4566676778999999999999999998853
No 108
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.88 E-value=11 Score=31.95 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=21.4
Q ss_pred EEEEecccccccccccccchHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
.+|.|-...-|.|||++|..|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 455666667799999999999987653
No 109
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=39.85 E-value=12 Score=32.46 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=23.6
Q ss_pred EEEEEecccccccccccccchHHHHHHH
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
..+|.|-...-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4677777788899999999999998875
No 110
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=37.86 E-value=9.9 Score=32.67 Aligned_cols=28 Identities=18% Similarity=0.394 Sum_probs=23.4
Q ss_pred EEEEEecccccccccccccchHHHHHHH
Q 021032 246 TIEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 246 t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
..+|.|-...-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4667777888899999999999987764
No 111
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=35.18 E-value=16 Score=32.45 Aligned_cols=35 Identities=23% Similarity=0.301 Sum_probs=25.1
Q ss_pred EEEEEecc-cccccccccccchHHHHHH--------HhCCEEEE
Q 021032 246 TIEVVIPQ-LYMAHVYGENNSNLSHIRQ--------ISGANVVV 280 (318)
Q Consensus 246 t~~v~IP~-~~vG~IIGk~G~~Ik~Ir~--------~SGA~I~i 280 (318)
...+.|.. +..+.||||+|+.||+|.. ..|++|.+
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 34556654 6779999999999997654 56666655
No 112
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=34.39 E-value=49 Score=24.39 Aligned_cols=66 Identities=14% Similarity=0.116 Sum_probs=41.8
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCC-CCCCCceEEEEecHHHHHHHHHHHHH
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRC-GSPHDEIVQVIGNYHSVQDALFHITS 98 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~-~~~~er~V~I~G~~~~V~~A~~~I~~ 98 (318)
...+||..+.+.+ ..-.|.+|-.++|..+.|...+--... .....=+|.+.|+.+++.+|+..+.+
T Consensus 21 ~~lvrL~f~g~~~------~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 21 VPMLRLEFTGQSV------DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp EEEEEEEEEEECT------TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred ceEEEEEEcCCcc------ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4456776653332 233789999999999999753110000 00112368899999999998887754
No 113
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.70 E-value=10 Score=32.85 Aligned_cols=29 Identities=21% Similarity=0.389 Sum_probs=24.3
Q ss_pred eEEEEEecccccccccccccchHHHHHHH
Q 021032 245 TTIEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 245 ~t~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
...+|.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 45677777788899999999999998875
No 114
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=31.59 E-value=11 Score=31.93 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=24.4
Q ss_pred EEEEecccccccccccccchHHHHHH----HhCCEEEE
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQ----ISGANVVV 280 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~----~SGA~I~i 280 (318)
.+|.|-...-|.|||++|+.|++|+. .++-.+.|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 34445556678999999999988775 46665554
No 115
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.45 E-value=75 Score=27.01 Aligned_cols=44 Identities=14% Similarity=0.341 Sum_probs=34.5
Q ss_pred EEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecHH
Q 021032 33 LVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNYH 87 (318)
Q Consensus 33 lVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~~ 87 (318)
-++...+..++|+++..++.|.+.+++.|-+- ..-.|=|.++..
T Consensus 141 ~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-----------~NG~IWi~~~~~ 184 (229)
T 2ba0_A 141 AINPARVPRVIGKKGSMIKLLKSELDVQIVVG-----------QNGLIWVNGDRR 184 (229)
T ss_dssp ECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-----------TTSEEEEESCHH
T ss_pred EECHHHhHHHhcCCchHHHHhcccCCeEEEEE-----------CCcEEEEeCCch
Confidence 45666777899999999999999999999983 234555778765
No 116
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=30.76 E-value=17 Score=31.47 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=20.7
Q ss_pred EEEEecccccccccccccchHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
.+|.|-...-|.|||++|..|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 344455566799999999999888764
No 117
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=30.10 E-value=15 Score=31.35 Aligned_cols=27 Identities=11% Similarity=0.181 Sum_probs=20.6
Q ss_pred EEEEecccccccccccccchHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQI 273 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~~ 273 (318)
.+|.|-...-|.|||++|..|++|++.
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHH
Confidence 444555566789999999999988764
No 118
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=29.56 E-value=79 Score=26.91 Aligned_cols=44 Identities=11% Similarity=0.175 Sum_probs=34.9
Q ss_pred EEEecccceeeeCCCCchHHHHHHHhCCeEEEecCCCCCCCCCCCCceEEEEecH
Q 021032 32 LLVHSQQIGCLLGRGGHIVSEMRRATGASIRVFPKDQAPRCGSPHDEIVQVIGNY 86 (318)
Q Consensus 32 llVp~~~vG~IIGkgG~~Ik~I~e~tGa~I~i~~~~~~p~~~~~~er~V~I~G~~ 86 (318)
+-++...+..++|++|..+..|.++++++|-+-. ...|-|.+..
T Consensus 152 v~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~ 195 (235)
T 2z0s_A 152 VEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPN 195 (235)
T ss_dssp EECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSC
T ss_pred EEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCC
Confidence 4566678889999999999999999999999832 4566687643
No 119
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=29.15 E-value=12 Score=32.17 Aligned_cols=33 Identities=24% Similarity=0.393 Sum_probs=23.6
Q ss_pred EEEEecccccccccccccchHHHHHH----HhCCEEE
Q 021032 247 IEVVIPQLYMAHVYGENNSNLSHIRQ----ISGANVV 279 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~~Ik~Ir~----~SGA~I~ 279 (318)
.+|.|-...-|.|||++|..|++|+. .++-.+.
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~L~k~~~~~v~ 100 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQ 100 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHHHHHHHTSCBC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceE
Confidence 44555566778999999999988775 4565433
No 120
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=28.87 E-value=35 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.132 Sum_probs=29.3
Q ss_pred ceEEEEEecccccccccccccchHHHH-HHHh--------CC---EEEEcC
Q 021032 244 STTIEVVIPQLYMAHVYGENNSNLSHI-RQIS--------GA---NVVVND 282 (318)
Q Consensus 244 ~~t~~v~IP~~~vG~IIGk~G~~Ik~I-r~~S--------GA---~I~i~~ 282 (318)
.....+.||.+.+|.+|| ..|++| ++.+ |+ .|.|.+
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 456788999999999999 589995 9989 98 556643
No 121
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=28.45 E-value=65 Score=26.25 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=43.2
Q ss_pred EEEEecccccccccccccc-hHHHHHHHhCCEEEEcCCCCCCCCeEEEEEc-CHHHHHHHHHHHHH
Q 021032 247 IEVVIPQLYMAHVYGENNS-NLSHIRQISGANVVVNDPKPGATEGVVMVSG-TSDQMRAAQSLIHA 310 (318)
Q Consensus 247 ~~v~IP~~~vG~IIGk~G~-~Ik~Ir~~SGA~I~i~~~~~~~~er~v~I~G-t~~~v~~A~~lI~~ 310 (318)
.-+.|+..++-+++||.|. .++.|.+.+++.|-+- ....|=|.+ ++...-++...|..
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG------~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG------LNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE------TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE------CCcEEEEecCCHHHHHHHHHHHHH
Confidence 4577999999999999898 9999999999999994 234455775 55555545455555
No 122
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=26.18 E-value=80 Score=25.61 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=29.3
Q ss_pred eeEEEEEEecccceeeeCCCCchHHHH-HHHh--------CC---eEEEec
Q 021032 27 AVVARLLVHSQQIGCLLGRGGHIVSEM-RRAT--------GA---SIRVFP 65 (318)
Q Consensus 27 ~~~~rllVp~~~vG~IIGkgG~~Ik~I-~e~t--------Ga---~I~i~~ 65 (318)
.+...+.||.+..|.+|| .+|+++ ++++ |+ .+.|..
T Consensus 6 ~l~~~i~I~P~~~~~~i~---~~I~~~L~~~~~gk~~~~~G~~i~~idi~~ 53 (187)
T 1go3_E 6 EIADVVKVPPEEFGKDLK---ETVKKILMEKYEGRLDKDVGFVLSIVDVKD 53 (187)
T ss_dssp EEEEEEEECGGGTTSCHH---HHHHHHHHHHHTTCEETTTEEEEEEEEEEE
T ss_pred EEEEEEEECHHHhCccHH---HHHHHHHHHHhCCeEcCCccEEEEEEEEee
Confidence 456788999999999999 689995 9999 88 556643
No 123
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=25.40 E-value=20 Score=31.73 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=22.4
Q ss_pred eEEEEEEe-cccceeeeCCCCchHHHHHHH
Q 021032 28 VVARLLVH-SQQIGCLLGRGGHIVSEMRRA 56 (318)
Q Consensus 28 ~~~rllVp-~~~vG~IIGkgG~~Ik~I~e~ 56 (318)
+...++|- .++-+.|||++|+.||+|-.+
T Consensus 231 i~~~i~v~~~~~k~i~ig~~G~~~k~ig~~ 260 (301)
T 1ega_A 231 INGLILVEREGQKKMVIGNKGAKIKTIGIE 260 (301)
T ss_dssp EEEEEEESSHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEEECCceEEEECCCcHHHHHHHHH
Confidence 44666774 468899999999999987543
Done!