Your job contains 1 sequence.
>021034
MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL
NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT
AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER
CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV
DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR
VADIATVLQPGDTLKVCL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 021034
(318 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2145860 - symbol:RPS1 "ribosomal protein S1" s... 1132 8.2e-115 1
TIGR_CMR|BA_1519 - symbol:BA_1519 "ribosomal protein S1" ... 258 3.4e-22 1
UNIPROTKB|O06147 - symbol:rpsA "30S ribosomal protein S1"... 258 1.3e-21 1
TIGR_CMR|SPO_0802 - symbol:SPO_0802 "ribosomal protein S1... 219 3.6e-17 1
TIGR_CMR|CPS_2335 - symbol:CPS_2335 "ribosomal protein S1... 191 7.9e-13 2
UNIPROTKB|Q9KQT3 - symbol:VC_1915 "30S ribosomal protein ... 188 3.3e-12 1
TIGR_CMR|VC_1915 - symbol:VC_1915 "ribosomal protein S1" ... 188 3.3e-12 1
TIGR_CMR|GSU_2603 - symbol:GSU_2603 "ribosomal protein S1... 185 8.5e-12 1
TIGR_CMR|SO_2402 - symbol:SO_2402 "ribosomal protein S1" ... 183 1.3e-11 1
TIGR_CMR|GSU_1200 - symbol:GSU_1200 "ribosomal protein S1... 180 1.6e-11 1
TAIR|locus:2095203 - symbol:AT3G23700 species:3702 "Arabi... 179 1.9e-11 1
UNIPROTKB|P0AG67 - symbol:rpsA "30S ribosomal subunit pro... 180 2.4e-11 2
TIGR_CMR|ECH_0402 - symbol:ECH_0402 "putative ribosomal p... 181 2.4e-11 1
TIGR_CMR|CJE_0972 - symbol:CJE_0972 "ribosomal protein S1... 176 9.1e-11 1
TIGR_CMR|APH_0273 - symbol:APH_0273 "ribosomal protein S1... 175 1.1e-10 1
TIGR_CMR|CHY_1925 - symbol:CHY_1925 "hydroxymethylbutenyl... 176 1.2e-10 1
TIGR_CMR|CBU_0528 - symbol:CBU_0528 "ribosomal protein S1... 165 1.7e-09 1
TAIR|locus:2222662 - symbol:AT5G14580 "AT5G14580" species... 132 2.2e-05 1
UNIPROTKB|Q71X59 - symbol:LMOf2365_2340 "S1 RNA binding d... 105 2.5e-05 1
TIGR_CMR|BA_5132 - symbol:BA_5132 "general stress protein... 103 4.2e-05 1
TIGR_CMR|NSE_0408 - symbol:NSE_0408 "ribosomal protein S1... 125 6.1e-05 1
TAIR|locus:2088644 - symbol:RRP5 "Ribosomal RNA Processin... 107 6.6e-05 2
TIGR_CMR|CPS_2207 - symbol:CPS_2207 "polyribonucleotide n... 124 0.00011 1
UNIPROTKB|Q3IJ73 - symbol:pnp "Polyribonucleotide nucleot... 122 0.00019 1
TAIR|locus:2119946 - symbol:emb2726 "embryo defective 272... 118 0.00075 1
UNIPROTKB|Q724J5 - symbol:LMOf2365_0229 "RNA-binding prot... 99 0.00081 1
TIGR_CMR|GSU_1593 - symbol:GSU_1593 "polyribonucleotide n... 116 0.00085 1
>TAIR|locus:2145860 [details] [associations]
symbol:RPS1 "ribosomal protein S1" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0009570 "chloroplast stroma"
evidence=IDA] [GO:0006098 "pentose-phosphate shunt" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0015995
"chlorophyll biosynthetic process" evidence=RCA] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009570 GO:GO:0016020 GO:GO:0003723 GO:GO:0005840
GO:GO:0009579 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945
EMBL:AF370232 EMBL:AY059914 EMBL:AY088230 EMBL:AY142540
IPI:IPI00524792 RefSeq:NP_850903.1 UniGene:At.24389
ProteinModelPortal:Q93VC7 SMR:Q93VC7 STRING:Q93VC7
World-2DPAGE:0003:Q93VC7 PRIDE:Q93VC7 ProMEX:Q93VC7
EnsemblPlants:AT5G30510.1 GeneID:833138 KEGG:ath:AT5G30510
TAIR:At5g30510 HOGENOM:HOG000232530 InParanoid:Q93VC7 OMA:SEISHEH
PhylomeDB:Q93VC7 ProtClustDB:CLSN2680335 ArrayExpress:Q93VC7
Genevestigator:Q93VC7 Uniprot:Q93VC7
Length = 416
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 227/319 (71%), Positives = 269/319 (84%)
Query: 1 MATLAQQFTGLRCPPISHT-RLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
MA+LAQQF+GLRC P+S + RLSRR S Q K ++ + TIV+AVA+S+ +T+ER E
Sbjct: 1 MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNK--SASVSPTIVAAVAMSSGQTKERLE 58
Query: 60 LNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L ++FE+AYERCRT+PMEGV+FT+++F +A+E+YDFNSE+GT+VKGTVF TD GALVDI
Sbjct: 59 LKKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDI 118
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
+AKSSAYL ++ACIH+IKHVEEAGIVPG+ EEFVIIGENE+DDSL+LSLR IQYELAWE
Sbjct: 119 SAKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWE 178
Query: 180 RCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
RCRQLQ+ED LRGFVPFSQISSK+ AEELL K++PLKFVE
Sbjct: 179 RCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVE 238
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 239 VDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHD 298
Query: 300 RVADIATVLQPGDTLKVCL 318
RV+DIATVLQPGDTLKV +
Sbjct: 299 RVSDIATVLQPGDTLKVMI 317
>TIGR_CMR|BA_1519 [details] [associations]
symbol:BA_1519 "ribosomal protein S1" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 KO:K02945 HOGENOM:HOG000044053 ProtClustDB:PRK06676
RefSeq:NP_843970.1 RefSeq:YP_018142.1 RefSeq:YP_027677.1
ProteinModelPortal:Q81SX5 DNASU:1083667
EnsemblBacteria:EBBACT00000012330 EnsemblBacteria:EBBACT00000016288
EnsemblBacteria:EBBACT00000024070 GeneID:1083667 GeneID:2817299
GeneID:2849711 KEGG:ban:BA_1519 KEGG:bar:GBAA_1519 KEGG:bat:BAS1408
OMA:DMMEEIN BioCyc:BANT260799:GJAJ-1482-MONOMER
BioCyc:BANT261594:GJ7F-1544-MONOMER Uniprot:Q81SX5
Length = 382
Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
Identities = 73/231 (31%), Positives = 120/231 (51%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E + + H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISE--LANV-HIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVP 215
I E D LVLS R + E AW ++ + +RGF+P
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQE-KFNSGHVFDVTVKDIVNGGLVVDLGVRGFIP 129
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-----G 265
S + + + GK L +K VE+D E++R++LS++ + DS+ + I G
Sbjct: 130 ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEG 189
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 190 DVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 144 (55.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 74/312 (23%), Positives = 139/312 (44%)
Query: 26 SITQIQQK--LLN-SRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFT 82
S+T++++K L+N K ++ ++N + ++ +L ++ E + +E
Sbjct: 24 SVTKVEEKQVLVNVGYKTDGVIPISELANVHIEKASDVVEL-DQTLE-LKVIKLEENDLV 81
Query: 83 LEEFHSALEKY------DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
L + EK FNS G TV N G +VD+ + ++P A + +
Sbjct: 82 LSKRAVDAEKAWVELQEKFNS--GHVFDVTVKDIVNGGLVVDLGVRG--FIP---ASLVE 134
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDXXXXX 193
+ +VE+ G I+ + + ++LS + +++ EL ++ + S E
Sbjct: 135 VHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEG 194
Query: 194 XXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVL 249
+ G V SQIS + + E+L G+ + +K + VD + R+ L
Sbjct: 195 TVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISL 254
Query: 250 SNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADI 304
S + A +G G + G V+ L +GAF++I G+ GL+HVSQI++ V +
Sbjct: 255 SIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNP 314
Query: 305 ATVLQPGDTLKV 316
VL+ G +KV
Sbjct: 315 NEVLEMGQEVKV 326
>UNIPROTKB|O06147 [details] [associations]
symbol:rpsA "30S ribosomal protein S1" species:1773
"Mycobacterium tuberculosis" [GO:0005618 "cell wall" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006412 EMBL:BX842577 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
KO:K02945 PIR:D70559 RefSeq:NP_216146.1 RefSeq:NP_336122.1
RefSeq:YP_006515019.1 ProteinModelPortal:O06147 SMR:O06147
PhosSite:P12061590 PRIDE:O06147 EnsemblBacteria:EBMYCT00000003837
EnsemblBacteria:EBMYCT00000072148 GeneID:13316409 GeneID:885188
GeneID:924199 KEGG:mtc:MT1666 KEGG:mtu:Rv1630 KEGG:mtv:RVBD_1630
PATRIC:18125426 TubercuList:Rv1630 HOGENOM:HOG000044053 OMA:WQQFART
ProtClustDB:PRK07899 Uniprot:O06147
Length = 481
Score = 258 (95.9 bits), Expect = 1.3e-21, P = 1.3e-21
Identities = 74/260 (28%), Positives = 132/260 (50%)
Query: 73 TAPMEGVSF--TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
T+P V+ + E+F +A++K Y FN G V+GT+ D L+DI K+ +
Sbjct: 7 TSPQVAVNDIGSSEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVI 63
Query: 128 PTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
P +E I H + E + G + E +++ + + + L+LS + QYE AW L+
Sbjct: 64 PARELSIKHDVDPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKE 121
Query: 187 EDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
+D LRGF+P S + + + +GK++ K +E+D+ +
Sbjct: 122 KDEAVKGTVIEVVKGGLILDIG-LRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+ +VLS R + +Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSEL 240
Query: 297 SHDRVADIATVLQPGDTLKV 316
S + + V+Q GD + V
Sbjct: 241 SWKHIDHPSEVVQVGDEVTV 260
Score = 131 (51.2 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 59/227 (25%), Positives = 101/227 (44%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLRG--FLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K E++ G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>TIGR_CMR|SPO_0802 [details] [associations]
symbol:SPO_0802 "ribosomal protein S1" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 OMA:SRRYPQG
RefSeq:YP_166055.1 ProteinModelPortal:Q5LVA0 SMR:Q5LVA0
GeneID:3195039 KEGG:sil:SPO0802 PATRIC:23374881 Uniprot:Q5LVA0
Length = 558
Score = 219 (82.2 bits), Expect = 3.6e-17, P = 3.6e-17
Identities = 66/247 (26%), Positives = 116/247 (46%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 5 SMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXX 199
E I G + E + A V+S M + E AW+R + ++D
Sbjct: 61 GEAPEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 120
Query: 200 XXXXXXXXXXLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +L
Sbjct: 181 SRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPNEILN 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETVKV 247
>TIGR_CMR|CPS_2335 [details] [associations]
symbol:CPS_2335 "ribosomal protein S1" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 RefSeq:YP_269055.1 ProteinModelPortal:Q482G3
SMR:Q482G3 STRING:Q482G3 GeneID:3519189 KEGG:cps:CPS_2335
PATRIC:21467761 BioCyc:CPSY167879:GI48-2400-MONOMER Uniprot:Q482G3
Length = 553
Score = 191 (72.3 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 57/242 (23%), Positives = 113/242 (46%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE-EAG 144
F +L++ + + G+ ++GT+ + +VD KS + + I + K+ E
Sbjct: 9 FEESLKEIE--TRPGSIIRGTIVAVNKDNVIVDAGLKSESVIS-----IDQFKNAAGEVE 61
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXX 204
+V G + + + ++ +LS + AW+ + E
Sbjct: 62 VVVGDEIDVALDATDDGFGETILSREKAKRHEAWQVLEKAYEEKETVIGVINGKVKGGFT 121
Query: 205 XXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+R F+P S + + + L GK L K +++D++++ +V+S R + A+ A+
Sbjct: 122 VEVSDIRAFLPGSLVDVRPVRDTAHLEGKPLEFKVIKLDQKRNNVVVSRRAVIEAEGSAE 181
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G V G V++L YGAF+D+GGI+GLLH++ ++ RV + ++ GD +
Sbjct: 182 RDELLESLAEGQEVKGIVKNLTDYGAFVDLGGIDGLLHITDMAWKRVKHPSEIVNVGDEI 241
Query: 315 KV 316
+V
Sbjct: 242 QV 243
Score = 106 (42.4 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 52/227 (22%), Positives = 91/227 (40%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G+K+ G V + G V+I + E K++ + +V G E +++
Sbjct: 277 GSKLSGRVTNLTDYGCFVEIQEGVEGLVHVSEMDWTN-KNIHPSKVVNLGDTVEVLVLEI 335
Query: 159 NEADDSLVLSLRMIQYELAWER-CRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ WE + D + G V S
Sbjct: 336 DEERRRISLGLKQCIAN-PWEEFAKNFNKGDKVSGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 218 QIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
IS ++ + G ++ ++VD E+ R+ L ++A D A G++V
Sbjct: 395 DISWAGGEEAVRDYKKGDEIDAIVLQVDPERERISLGVKQAEDDPFNMYLADKKKGAIVT 454
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
G V + GA I + + G L VS IS +R+ D +TVL+ GD ++
Sbjct: 455 GKVTEVDAKGATILLAESVEGYLRVSDISVERIEDASTVLKVGDDVE 501
Score = 53 (23.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 35 LNSRKNKTIVSAVAISNAE-TREREELNQLFEEAYE 69
L+ ++N +VS A+ AE + ER+EL + E E
Sbjct: 159 LDQKRNNVVVSRRAVIEAEGSAERDELLESLAEGQE 194
Score = 39 (18.8 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 58 EELNQLFEEAYERCRTAP 75
E QLFEE+ + T P
Sbjct: 3 ENFAQLFEESLKEIETRP 20
>UNIPROTKB|Q9KQT3 [details] [associations]
symbol:VC_1915 "30S ribosomal protein S1" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 HSSP:P05055
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
PIR:B82141 RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 188 (71.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 61/247 (24%), Positives = 113/247 (45%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
E F E++ + + GT VKGTV +N LVD KS + +P ++ K+
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQ-----FKNAA 57
Query: 142 -EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + G + + + + LS + AW + E
Sbjct: 58 GELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVK 117
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
+R F+P S + + + L K+L K +++D++++ +V+S R+A+ +S
Sbjct: 118 GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIES 176
Query: 259 QAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
++ L G+ V G V++L YGAF+D+GG++GLLH++ ++ RV + ++
Sbjct: 177 ESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236
Query: 310 PGDTLKV 316
GD + V
Sbjct: 237 VGDEILV 243
Score = 116 (45.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 51/228 (22%), Positives = 96/228 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G K+ G V + G V+I + E K++ + +V G + E +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W+ + Q++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVV 268
IS EE + G ++ + VD E+ R+ L ++ D A + G++V
Sbjct: 395 DISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALV 454
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
GTV ++ GA I++ G+ G + S++S DR+ D + +L GD ++
Sbjct: 455 NGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVE 502
Score = 55 (24.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 15 PISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETR-EREELNQLFEEAYE 69
PI T K + + + L+ ++N +VS A+ +E+ ER+EL + +E E
Sbjct: 140 PIRDTAHLENKEL-EFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTE 194
>TIGR_CMR|VC_1915 [details] [associations]
symbol:VC_1915 "ribosomal protein S1" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 KO:K02945 OMA:QLGQDPW
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 PIR:B82141
RefSeq:NP_231549.1 ProteinModelPortal:Q9KQT3 SMR:Q9KQT3
DNASU:2613544 GeneID:2613544 KEGG:vch:VC1915 PATRIC:20082874
Uniprot:Q9KQT3
Length = 556
Score = 188 (71.2 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 61/247 (24%), Positives = 113/247 (45%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
E F E++ + + GT VKGTV +N LVD KS + +P ++ K+
Sbjct: 3 ESFAQLFEEFLNETQFQQGTIVKGTVVAIENGYVLVDAGLKSESAIPAEQ-----FKNAA 57
Query: 142 -EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + G + + + + LS + AW + E
Sbjct: 58 GELEVQVGSQVDVALDAVEDGFGETQLSREKAKRHEAWIVLEKAYEEAATVIGIINGKVK 117
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
+R F+P S + + + L K+L K +++D++++ +V+S R+A+ +S
Sbjct: 118 GGFTVELNGIRAFLPGSLVDVRPIRDTAHLENKELEFKVIKLDQKRNNVVVS-RRAVIES 176
Query: 259 QAQ---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
++ L G+ V G V++L YGAF+D+GG++GLLH++ ++ RV + ++
Sbjct: 177 ESSVERDELLETLQEGTEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVN 236
Query: 310 PGDTLKV 316
GD + V
Sbjct: 237 VGDEILV 243
Score = 116 (45.9 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 51/228 (22%), Positives = 96/228 (42%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G K+ G V + G V+I + E K++ + +V G + E +++
Sbjct: 277 GHKLSGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDEVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W+ + Q++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQSFAEAQAKGDKVTGKIKSITDFGIFIGLEGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVV 268
IS EE + G ++ + VD E+ R+ L ++ D A + G++V
Sbjct: 395 DISWNVPGEEAVREFKKGDEISAVVLAVDAERERISLGIKQMENDPFNAYVSDNKKGALV 454
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
GTV ++ GA I++ G+ G + S++S DR+ D + +L GD ++
Sbjct: 455 NGTVTAVDAKGATIELEDGVEGYIRASEVSRDRIEDASLILNVGDKVE 502
Score = 55 (24.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 15 PISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETR-EREELNQLFEEAYE 69
PI T K + + + L+ ++N +VS A+ +E+ ER+EL + +E E
Sbjct: 140 PIRDTAHLENKEL-EFKVIKLDQKRNNVVVSRRAVIESESSVERDELLETLQEGTE 194
>TIGR_CMR|GSU_2603 [details] [associations]
symbol:GSU_2603 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681
PROSITE:PS50126 GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HOGENOM:HOG000044052 KO:K02945
ProtClustDB:PRK06299 TIGRFAMs:TIGR00717 RefSeq:NP_953648.2
GeneID:2686316 KEGG:gsu:GSU2603 PATRIC:22028059
BioCyc:GSUL243231:GH27-2582-MONOMER Uniprot:Q749Y9
Length = 586
Score = 185 (70.2 bits), Expect = 8.5e-12, P = 8.5e-12
Identities = 64/245 (26%), Positives = 110/245 (44%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
EF ++ + +G VKG V N LVDI KS +P +E ++EAG
Sbjct: 32 EFAELFQESIRHHHVGEVVKGKVVHISNDYVLVDIGYKSEGSIPVEE-------FLDEAG 84
Query: 145 -IVPGLKEEFVIIGENEADDS--LVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXX 201
+ + +E + E + + VLS R AW+ E
Sbjct: 85 NLTVQVGDEVKALFERKENQKGYAVLSKRKADRLSAWDSIDAAGGEGGIVEGKITGKVKG 144
Query: 202 XXXXXXXXLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
++ F+P SQ+ + ++ +G K +++++++ +VLS R + + +
Sbjct: 145 GLTVDIG-VQAFLPASQVDLRPGGNLDKYIGVTDRFKVLKLNKKRGNIVLSRRVLLEEER 203
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
A L G G V+++ YGAF+DIGG++GLLHV+ +S R+ + +L+PG
Sbjct: 204 AGVRTETLANLAEGQTREGVVKNITDYGAFVDIGGVDGLLHVTDMSWGRLGHPSEMLKPG 263
Query: 312 DTLKV 316
D L V
Sbjct: 264 DKLSV 268
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 56/241 (23%), Positives = 107/241 (44%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
SA + D G V+G + G VDI + A+LP + + ++++
Sbjct: 119 SAWDSIDAAGGEGGIVEGKITGKVKGGLTVDIGVQ--AFLPASQVDLRPGGNLDK---YI 173
Query: 148 GLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDXXXXXXXXXXXXXXXX 204
G+ + F ++ N+ ++VLS R +++ E A R L + E
Sbjct: 174 GVTDRFKVLKLNKKRGNIVLSRRVLLEEERAGVRTETLANLAEGQTREGVVKNITDYGAF 233
Query: 205 XXXXXLRGFVPFSQIS--SKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-- 258
+ G + + +S E+L G L +K ++ D+E+ ++ L ++ D
Sbjct: 234 VDIGGVDGLLHVTDMSWGRLGHPSEMLKPGDKLSVKILKYDQEKGKISLGLKQITPDPWL 293
Query: 259 --QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTL 314
+ + +G V G V S+ YGAF+ + G+ GL+HVS++S R+ + +L GD +
Sbjct: 294 AVEQKFQVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDLLTVGDEV 353
Query: 315 K 315
+
Sbjct: 354 E 354
Score = 115 (45.5 bits), Expect = 0.00087, P = 0.00087
Identities = 54/229 (23%), Positives = 94/229 (41%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G +V G V + GA V + + E + +++H + + G + E V++
Sbjct: 300 QVGDRVSGRVVSMTDYGAFVALDEGVEGLVHVSEMSWTKRLRHPSDL-LTVGDEVETVVL 358
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXX-LRGFVP 215
G + + + L L+ Q W + + + G V
Sbjct: 359 GIDTGNRRISLGLKQAQAN-PWTQLEEKYPVGTKLEGQIKSITDFGVFIGVDEGIDGLVH 417
Query: 216 FSQIS-SKSTAE--ELLGKDLPLKFV--EVDEEQSRLVLSNRKAMADSQAQLGI----GS 266
S IS +K E+ K ++ V VD E RL L ++ D + + G+
Sbjct: 418 VSDISWTKRIKHPGEVYAKGQTVQAVVLNVDAENERLSLGIKQLTPDPWSVIPATYRPGT 477
Query: 267 VVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTL 314
V G V S+ +G F++I GI GL+HVS++S ++VA GD L
Sbjct: 478 RVRGKVTSVTDFGVFLEIEEGIEGLVHVSELSREKVASPKDFASVGDEL 526
>TIGR_CMR|SO_2402 [details] [associations]
symbol:SO_2402 "ribosomal protein S1" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000044052
KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299 TIGRFAMs:TIGR00717
RefSeq:NP_717992.1 ProteinModelPortal:Q8EEI0 SMR:Q8EEI0
GeneID:1170119 KEGG:son:SO_2402 PATRIC:23524423 Uniprot:Q8EEI0
Length = 555
Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 58/241 (24%), Positives = 110/241 (45%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F +L+ +F G+ V+GTV +N LVD KS + +P ++ + V E +
Sbjct: 9 FEQSLQTLEFRP--GSIVRGTVVAIENGMVLVDAGLKSESPIPAEQ--FKNAQGVLEIAV 64
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXX 205
G + + + + LS + AW + +
Sbjct: 65 --GDEVDVALDSVEDGFGETQLSREKAKRHEAWIVLEKAYEDAETVIGIINGKVKGGFTV 122
Query: 206 XXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ- 261
+R F+P S + + + L K+L K +++D++++ +V+S R + ++S A+
Sbjct: 123 ELNGIRAFLPGSLVDVRPVRDTAHLEYKELEFKVIKLDQKRNNVVVSRRAVIESESSAER 182
Query: 262 ------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD +
Sbjct: 183 DALLENLQEGQAVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEIN 242
Query: 316 V 316
V
Sbjct: 243 V 243
>TIGR_CMR|GSU_1200 [details] [associations]
symbol:GSU_1200 "ribosomal protein S1" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K02945 HOGENOM:HOG000044053
RefSeq:NP_952253.1 ProteinModelPortal:Q74DW5 GeneID:2685786
KEGG:gsu:GSU1200 PATRIC:22025170 OMA:NEMRFTT ProtClustDB:PRK06676
BioCyc:GSUL243231:GH27-1176-MONOMER Uniprot:Q74DW5
Length = 402
Score = 180 (68.4 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 43/113 (38%), Positives = 63/113 (55%)
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+R F P+SQIS + A E +G+ L K VE E +VLS+R + + + Q
Sbjct: 139 VRAFCPYSQISLRRAANPAEFVGRQLLFKVVEFAERGRNIVLSHRAILEEEERQKREALK 198
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
L G+ + GTV L P+GAF+DIGG+ GL+ +S+ RV +I VL G+
Sbjct: 199 DTLKEGTTLTGTVTRLMPFGAFVDIGGVEGLIPISEAGWSRVKEIGDVLSVGE 251
>TAIR|locus:2095203 [details] [associations]
symbol:AT3G23700 species:3702 "Arabidopsis thaliana"
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009409 "response to cold" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006098 "pentose-phosphate
shunt" evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009773 "photosynthetic electron transport in photosystem I"
evidence=RCA] [GO:0009902 "chloroplast relocation" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0015995 "chlorophyll biosynthetic process" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] [GO:0042742 "defense response to
bacterium" evidence=RCA] [GO:0042793 "transcription from plastid
promoter" evidence=RCA] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0005634 GO:GO:0009570 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009409 EMBL:AP000377 GO:GO:0003723
GO:GO:0005840 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 UniGene:At.6667
eggNOG:COG0539 EMBL:AY049283 EMBL:AY139796 IPI:IPI00535895
RefSeq:NP_566737.1 ProteinModelPortal:Q9LK47 SMR:Q9LK47
IntAct:Q9LK47 STRING:Q9LK47 PaxDb:Q9LK47 PRIDE:Q9LK47
EnsemblPlants:AT3G23700.1 GeneID:821951 KEGG:ath:AT3G23700
TAIR:At3g23700 HOGENOM:HOG000264640 InParanoid:Q9LK47 OMA:GLYHLTG
PhylomeDB:Q9LK47 ProtClustDB:CLSN2688704 Genevestigator:Q9LK47
Uniprot:Q9LK47
Length = 392
Score = 179 (68.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 49/125 (39%), Positives = 74/125 (59%)
Query: 210 LRGFVPFSQIS-SKST----------AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
L GF+P+ Q+S S+S A+ L+G LP+K V+ DEE +L+LS + A+
Sbjct: 129 LVGFLPYPQLSPSRSCKEPQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPK 188
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFI----DIG--GINGLLHVSQISHDRVADIATVLQPG 311
+Q + +G V G V S++ YGAFI D G + GL+HVS++S D V D+ VL+ G
Sbjct: 189 YSQNVNVGDVFNGRVGSVEDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDG 248
Query: 312 DTLKV 316
D ++V
Sbjct: 249 DEVRV 253
>UNIPROTKB|P0AG67 [details] [associations]
symbol:rpsA "30S ribosomal subunit protein S1"
species:83333 "Escherichia coli K-12" [GO:2000766 "negative
regulation of cytoplasmic translation" evidence=IEP;IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0016020 "membrane"
evidence=IDA] [GO:0022627 "cytosolic small ribosomal subunit"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0006412
"translation" evidence=IMP] [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 GO:GO:0003729 GO:GO:0003735
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 PDB:2BH8 PDBsum:2BH8 GO:GO:0022627
GO:GO:2000766 EMBL:X04864 EMBL:X00785 EMBL:V00352 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
TIGRFAMs:TIGR00717 EMBL:V00342 PIR:F64830 RefSeq:NP_415431.1
RefSeq:YP_489183.1 PDB:2KHI PDB:2KHJ PDBsum:2KHI PDBsum:2KHJ
ProteinModelPortal:P0AG67 SMR:P0AG67 DIP:DIP-35884N IntAct:P0AG67
MINT:MINT-1315122 PhosSite:P010447 SWISS-2DPAGE:P0AG67 PaxDb:P0AG67
PRIDE:P0AG67 EnsemblBacteria:EBESCT00000004097
EnsemblBacteria:EBESCT00000004098 EnsemblBacteria:EBESCT00000004099
EnsemblBacteria:EBESCT00000017224 GeneID:12934066 GeneID:945536
KEGG:ecj:Y75_p0883 KEGG:eco:b0911 PATRIC:32117035 EchoBASE:EB0893
EcoGene:EG10900 BioCyc:EcoCyc:EG10900-MONOMER
BioCyc:ECOL316407:JW0894-MONOMER EvolutionaryTrace:P0AG67
Genevestigator:P0AG67 Uniprot:P0AG67
Length = 557
Score = 180 (68.4 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 57/242 (23%), Positives = 112/242 (46%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE-EAG 144
F +L++ + + G+ V+G V D LVD KS + +P ++ K+ + E
Sbjct: 9 FEESLKEIE--TRPGSIVRGVVVAIDKDVVLVDAGLKSESAIPAEQ-----FKNAQGELE 61
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXX 204
I G + + + + +LS + AW + +
Sbjct: 62 IQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAYEDAETVTGVINGKVKGGFT 121
Query: 205 XXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+R F+P S + + + L GK+L K +++D++++ +V+S R + +++ A+
Sbjct: 122 VELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLDQKRNNVVVSRRAVIESENSAE 181
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G V G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD +
Sbjct: 182 RDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEI 241
Query: 315 KV 316
V
Sbjct: 242 TV 243
Score = 117 (46.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 52/228 (22%), Positives = 94/228 (41%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
GTK+ G V + G V+I + E K++ + +V G E +++
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTN-KNIHPSKVVNVGDVVEVMVLDI 335
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE-DXXXXXXXXXXXXXXXXXXXXXLRGFVPFS 217
+E + L L+ + W++ + ++ D + G V S
Sbjct: 336 DEERRRISLGLKQCKAN-PWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLS 394
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD---SQAQLGI-GSVV 268
IS EE + G ++ ++VD E+ R+ L ++ D + L G++V
Sbjct: 395 DISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIV 454
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
G V ++ GA +++ G+ G L S+ S DRV D VL GD ++
Sbjct: 455 TGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVE 502
Score = 49 (22.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 35 LNSRKNKTIVSAVAISNAE-TREREELNQLFEEAYE 69
L+ ++N +VS A+ +E + ER++L + +E E
Sbjct: 159 LDQKRNNVVVSRRAVIESENSAERDQLLENLQEGME 194
Score = 39 (18.8 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 58 EELNQLFEEAYERCRTAP 75
E QLFEE+ + T P
Sbjct: 3 ESFAQLFEESLKEIETRP 20
>TIGR_CMR|ECH_0402 [details] [associations]
symbol:ECH_0402 "putative ribosomal protein S1"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] [GO:0015935 "small ribosomal subunit"
evidence=ISS] InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_507222.1 ProteinModelPortal:Q2GH61 STRING:Q2GH61
GeneID:3927480 KEGG:ech:ECH_0402 PATRIC:20576281
BioCyc:ECHA205920:GJNR-403-MONOMER Uniprot:Q2GH61
Length = 567
Score = 181 (68.8 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 62/249 (24%), Positives = 119/249 (47%)
Query: 85 EFHSALEKY-DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EF AL+++ D + + G ++GT+ C D +D KS + + +E + +
Sbjct: 44 EFQHALKEFIDDSVKEGQIIEGTIICIDKGYVTIDSGLKSESIVSLKEFELGD----DYQ 99
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSL-RMIQYELAWERCRQLQSEDXXXXXXXXXXXXXX 202
I G K + + + S+VLS + I+ EL W++ + +
Sbjct: 100 NISIGSKVKLYLEKIEGRNGSVVLSREKAIRDEL-WQKLEEAAEKKEDVEGVIFSSIKCG 158
Query: 203 XXXXXXXLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR----KAMA 256
+ F+P S ++ + + LLGK + +++D++Q +V+S + +++A
Sbjct: 159 YTVDIKGVVAFLPASHVALRQVKDITPLLGKKQKFRILKMDKKQGNIVVSRKAILEESLA 218
Query: 257 DSQA----QLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADIAT 306
D+++ QL G ++ G V+S+ YG FI+I G ++GLLH++ IS RV+ +
Sbjct: 219 DAKSLYLSQLNEGDIIEGKVKSITKYGVFIEIHESPSVGVVDGLLHITDISWSRVSHPSA 278
Query: 307 VLQPGDTLK 315
V G T+K
Sbjct: 279 VFSCGQTVK 287
>TIGR_CMR|CJE_0972 [details] [associations]
symbol:CJE_0972 "ribosomal protein S1" species:195099
"Campylobacter jejuni RM1221" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 ProtClustDB:PRK06299
RefSeq:YP_178970.1 ProteinModelPortal:Q5HUR5 STRING:Q5HUR5
GeneID:3231483 KEGG:cjr:CJE0972 PATRIC:20043727 OMA:SRRYPQG
BioCyc:CJEJ195099:GJC0-992-MONOMER Uniprot:Q5HUR5
Length = 556
Score = 176 (67.0 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 63/252 (25%), Positives = 112/252 (44%)
Query: 77 EGVSFTLEE--FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
+GV LEE F LE +D + E T +G + N VDI KS L E
Sbjct: 10 DGVDDYLEEEDFGQLLEAFDKSREEAT-TEGVIVEIKNDEVYVDIGKKSEGILALSEIQG 68
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS--EDXXXX 192
K + G +K ++G + SL+ + ++ E E + Q +D
Sbjct: 69 DNSKLLFNVG--DSIK--VAVMG-SRGGRSLLSHKKALRKEKVIEFIKNYQENQDDIFTV 123
Query: 193 XXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
+ F+P SQ K T ++GK +K +++D+++ +++S +
Sbjct: 124 KVVGKNKGGLIVVDENDVEFFLPKSQYGFKET-NNIIGKTFKVKIIKIDKDEQSIIVSRK 182
Query: 253 KAMADSQAQLG--IGSV------VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
K + D + + I +V + G V+ + YG F+D+GG++GL+H S+IS+ +
Sbjct: 183 KTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGMFVDVGGVDGLVHYSEISYKGPVNP 242
Query: 305 ATVLQPGDTLKV 316
T+ + GD + V
Sbjct: 243 GTLYKEGDKVPV 254
Score = 143 (55.4 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 35/98 (35%), Positives = 58/98 (59%)
Query: 212 GFVPFSQISSKSTAEE-LLGKD---LPLKFVEVDEEQSRLVLSNRKAMADSQAQ----LG 263
G V +S+IS K L K+ +P+K ++ D+E+ L LS + A+ D ++ L
Sbjct: 227 GLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPDPWSEIKDTLD 286
Query: 264 IGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDR 300
+G + V +++PYGAF+D+G I G LH+S+IS D+
Sbjct: 287 VGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDK 324
Score = 123 (48.4 bits), Expect = 0.00010, P = 0.00010
Identities = 34/116 (29%), Positives = 60/116 (51%)
Query: 210 LRGFVPFSQIS-SKS--TAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQA 260
+ GF+ S+IS K+ ++ + G+++ ++ +E++ + RL +S R ++ +
Sbjct: 311 IEGFLHISEISWDKNIKNPKDYINKGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMK 370
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
I VV G + S+ +GAF+ +GGI GLLH S DR GD +KV
Sbjct: 371 SYKIADVVEGEITSVTSFGAFVKLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKV 426
>TIGR_CMR|APH_0273 [details] [associations]
symbol:APH_0273 "ribosomal protein S1" species:212042
"Anaplasma phagocytophilum HZ" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 EMBL:CP000235
GenomeReviews:CP000235_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR002792 PROSITE:PS50926
InterPro:IPR022967 SMART:SM00316 eggNOG:COG0539
HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW ProtClustDB:PRK06299
RefSeq:YP_504887.1 ProteinModelPortal:Q2GL64 STRING:Q2GL64
GeneID:3930767 KEGG:aph:APH_0273 PATRIC:20949120
BioCyc:APHA212042:GHPM-305-MONOMER Uniprot:Q2GL64
Length = 542
Score = 175 (66.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 63/242 (26%), Positives = 112/242 (46%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
E D G ++GTV C D+ VD KS + +E + + K E G K
Sbjct: 27 ELLDGGPREGEIIEGTVICKDSGYITVDAGLKSEGVVSLREFELGEGKQDIEVGS----K 82
Query: 151 EEFVIIGENEADDSLVLSL-RMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXX 209
+ + S+VLS + ++ EL W++ Q +E+
Sbjct: 83 VKLYLEKTEGKSGSVVLSREKAVRDEL-WQKLEQAAAENLDIEGVIFGSIKCGFTVDVGG 141
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQ---- 259
+ F+P S + + + LLGK + +++D++Q +V+S + +++AD++
Sbjct: 142 VVAFLPASHVGLRQVKDITPLLGKKQKFRILKMDKKQGNVVVSRKAVLEESLADAKDSFL 201
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADIATVLQPGDT 313
+ L GS+V G V+S+ YG FI+I G ++GLLH++ IS RV+ + V G T
Sbjct: 202 STLEEGSIVEGKVKSITKYGVFIEIHESPTVGVVDGLLHITDISWSRVSHPSAVFSCGQT 261
Query: 314 LK 315
++
Sbjct: 262 VR 263
>TIGR_CMR|CHY_1925 [details] [associations]
symbol:CHY_1925 "hydroxymethylbutenyl pyrophosphate
reductase/ribosomal protein S1" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0015968 "stringent response"
evidence=ISS] [GO:0042380 "hydroxymethylbutenyl pyrophosphate
reductase activity" evidence=ISS] [GO:0046677 "response to
antibiotic" evidence=ISS] HAMAP:MF_00191 InterPro:IPR000110
InterPro:IPR003029 InterPro:IPR003451 Pfam:PF00575 Pfam:PF02401
PRINTS:PR00681 PROSITE:PS50126 UniPathway:UPA00056
UniPathway:UPA00059 GO:GO:0046872 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0016491 GO:GO:0003723
GO:GO:0005840 GO:GO:0003735 GO:GO:0051538 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GO:GO:0019288 GO:GO:0050992 KO:K03527 TIGRFAMs:TIGR00216
eggNOG:COG0761 KO:K02945 RefSeq:YP_360744.1
ProteinModelPortal:Q3AAU0 STRING:Q3AAU0 GeneID:3726742
KEGG:chy:CHY_1925 PATRIC:21276941 HOGENOM:HOG000057927 OMA:KLIEDPW
ProtClustDB:PRK00087 BioCyc:CHYD246194:GJCN-1924-MONOMER
Uniprot:Q3AAU0
Length = 653
Score = 176 (67.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 62/228 (27%), Positives = 102/228 (44%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF-VIIGE 158
G V+G V + LVDI K +P +E ++I+ +A + G +EF V++ +
Sbjct: 292 GEIVRGKVVKVLEKEVLVDIGTKGEGVIPLEEITWYRIERARDA-VKEG--DEFPVLVLK 348
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQ 218
+ + ++LS + LA E+ + Q ++ +R F+P S
Sbjct: 349 EDEEGKIILSRKKALEILAEEKLLEWQ-KNKVPVTGKIVEVVKGGVLVDIGVRAFLPASL 407
Query: 219 ISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
I+ E L G+++ +EVD + R+VL + + + + A L GS V
Sbjct: 408 IALNYVEDLEALKGEEITAYVIEVDLAKRRVVLDRKSYLKEQEIKTKKEKIATLKEGSKV 467
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V + P+GAF+D+GG GLL IS R LQ G L+V
Sbjct: 468 KGKVTKIMPFGAFVDLGGFEGLLRAQDISWQRNVRPEEHLQVGQELEV 515
>TIGR_CMR|CBU_0528 [details] [associations]
symbol:CBU_0528 "ribosomal protein S1" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR000110 InterPro:IPR003029
Pfam:PF00575 PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 eggNOG:COG0539 RefSeq:NP_819560.2
ProteinModelPortal:Q83E09 SMR:Q83E09 PRIDE:Q83E09 GeneID:1208413
KEGG:cbu:CBU_0528 PATRIC:17929757 HOGENOM:HOG000044052 KO:K02945
OMA:QLGQDPW ProtClustDB:PRK06299 BioCyc:CBUR227377:GJ7S-531-MONOMER
TIGRFAMs:TIGR00717 Uniprot:Q83E09
Length = 551
Score = 165 (63.1 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 60/246 (24%), Positives = 107/246 (43%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F +L + D G VK TV +V+ KS +P E ++ E
Sbjct: 7 ELFEKSLTETDLRP--GALVKATVVEVRPDRVIVNAGLKSEGIIPASE-----FRNEE-- 57
Query: 144 GIVPGLKEEFVIIGENEADDSLV---LSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
P + +EF ++ E +D+ LS + AW +
Sbjct: 58 ---PHVGDEFFVVIE-ASDNGFGETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERVK 113
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAM--- 255
+R F+P S + K + L K++ K +++D+ ++ +V+S R M
Sbjct: 114 GGFTVDLNSVRAFLPGSLVDVKPVRDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEAE 173
Query: 256 --ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
A+ QA +L G + G ++++ YGAF+D+GG++GLLH++ ++ RV + +L
Sbjct: 174 TSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLNV 233
Query: 311 GDTLKV 316
GD + V
Sbjct: 234 GDEVHV 239
Score = 118 (46.6 bits), Expect = 0.00037, P = 0.00037
Identities = 61/291 (20%), Positives = 127/291 (43%)
Query: 39 KNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSE 98
K++ I+ A N E +E + E + + + S LEK +
Sbjct: 43 KSEGIIPASEFRNEEPHVGDEFFVVIEASDNGFGETRLSREKARRAKAWSELEKA---YK 99
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G VKG + G VD+ + A+LP + +K V + G + + +F II
Sbjct: 100 AGEMVKGVIIERVKGGFTVDLNSVR-AFLP---GSLVDVKPVRDPGYLEDKEIDFKIIKM 155
Query: 159 NEADDSLVLSLRMI-QYELAWERCRQLQS--EDXXXXXXXXXXXXXXXXXXXXXLRGFVP 215
++ +++V+S R + + E + ER +L+ E + G +
Sbjct: 156 DQRRNNVVVSRRAVMEAETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLH 215
Query: 216 FSQIS---SKSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSV 267
+ ++ K ++ L +G ++ +K ++ D ++ R+ L ++ D A++ + S
Sbjct: 216 ITDMAWGRVKHPSDLLNVGDEVHVKVLKFDRDKKRVSLGMKQLADDPWAKIERRYPVNSR 275
Query: 268 VIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPGDTLKV 316
V G V ++ YG F+ + G+ GL+H S++ ++ + V+Q G+ ++V
Sbjct: 276 VFGKVTNITDYGCFVKLEEGVEGLVHTSELDWTNKNIHPSKVVQSGEEVEV 326
>TAIR|locus:2222662 [details] [associations]
symbol:AT5G14580 "AT5G14580" species:3702 "Arabidopsis
thaliana" [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IGI;ISS] [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0000957 "mitochondrial RNA catabolic process"
evidence=IGI] [GO:0000963 "mitochondrial RNA processing"
evidence=IGI] [GO:0004654 "polyribonucleotide
nucleotidyltransferase activity" evidence=IGI] [GO:0042991
"transcription factor import into nucleus" evidence=RCA]
HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00575 Pfam:PF03726
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005739 EMBL:CP002688
GO:GO:0006397 GO:GO:0003723 GO:GO:0008033 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0006364 GO:GO:0000963
GO:GO:0000175 InterPro:IPR022967 SMART:SM00316 EMBL:AL163792
HSSP:P05055 GO:GO:0000957 Pfam:PF03725 SUPFAM:SSF55666
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 EMBL:Y14685
EMBL:Y14686 IPI:IPI00534639 PIR:T48631 RefSeq:NP_196962.1
UniGene:At.427 ProteinModelPortal:Q9S7G6 SMR:Q9S7G6 STRING:Q9S7G6
PRIDE:Q9S7G6 EnsemblPlants:AT5G14580.1 GeneID:831309
KEGG:ath:AT5G14580 GeneFarm:4118 TAIR:At5g14580 InParanoid:Q9S7G6
OMA:RDKTLMI PhylomeDB:Q9S7G6 ProtClustDB:CLSN2687232
Genevestigator:Q9S7G6 Uniprot:Q9S7G6
Length = 991
Score = 132 (51.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDI-GGIN 288
+ +D +V N+ M +Q Q L +G V GTV S+K YGAF++ GG
Sbjct: 643 LSIDNGTLTIVAKNQDVMEKAQEQVDFIIGRELVVGGVYKGTVSSIKEYGAFVEFPGGQQ 702
Query: 289 GLLHVSQISHDRVADIATVLQPGDTLK-VCL 318
GLLH+S++SH+ V+ ++ VL G + +C+
Sbjct: 703 GLLHMSELSHEPVSKVSDVLDIGQCITTMCI 733
>UNIPROTKB|Q71X59 [details] [associations]
symbol:LMOf2365_2340 "S1 RNA binding domain protein"
species:265669 "Listeria monocytogenes serotype 4b str. F2365"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000110
InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681 PROSITE:PS50126
GO:GO:0006412 GO:GO:0003723 GO:GO:0005840 GO:GO:0003735
EMBL:AE017262 GenomeReviews:AE017262_GR Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
RefSeq:YP_014929.1 ProteinModelPortal:Q71X59 STRING:Q71X59
GeneID:2799400 KEGG:lmf:LMOf2365_2340 PATRIC:20326043
eggNOG:COG1098 HOGENOM:HOG000217052 KO:K07570 OMA:KSIHDIA
ProtClustDB:PRK08059 Uniprot:Q71X59
Length = 117
Score = 105 (42.0 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G + ++ YGAF+ + GL+H+S+I+H V DI L+ G +KV
Sbjct: 6 VGDVVSGKIAGIQSYGAFVALDNSTQGLVHISEITHGFVKDIHDFLEVGQEVKV 59
>TIGR_CMR|BA_5132 [details] [associations]
symbol:BA_5132 "general stress protein 13" species:198094
"Bacillus anthracis str. Ames" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006950 "response to stress" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575 PRINTS:PR00681
PROSITE:PS50126 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006412 GO:GO:0003723 GO:GO:0005840
GO:GO:0003735 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 HSSP:P05055 HOGENOM:HOG000217052
KO:K07570 ProtClustDB:PRK08059 RefSeq:NP_847318.1
RefSeq:YP_021786.1 RefSeq:YP_031013.1 ProteinModelPortal:Q81K73
DNASU:1084499 EnsemblBacteria:EBBACT00000012496
EnsemblBacteria:EBBACT00000016095 EnsemblBacteria:EBBACT00000023270
GeneID:1084499 GeneID:2815743 GeneID:2848785 KEGG:ban:BA_5132
KEGG:bar:GBAA_5132 KEGG:bat:BAS4770 OMA:ETPDHTE
BioCyc:BANT260799:GJAJ-4848-MONOMER
BioCyc:BANT261594:GJ7F-5009-MONOMER Uniprot:Q81K73
Length = 114
Score = 103 (41.3 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
Q G VV G V ++ YGAF+ + GL+H+S+I++ V DI L+ GDT++V
Sbjct: 4 QYTTGVVVTGKVTGIQDYGAFVALDAETQGLVHISEITNGYVKDIHDFLKVGDTVEV 60
>TIGR_CMR|NSE_0408 [details] [associations]
symbol:NSE_0408 "ribosomal protein S1" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] [GO:0015935 "small ribosomal subunit" evidence=ISS]
InterPro:IPR000110 InterPro:IPR003029 Pfam:PF00575
PIRSF:PIRSF002111 PRINTS:PR00681 PROSITE:PS50126 GO:GO:0006412
GO:GO:0003723 GO:GO:0005840 GO:GO:0003735 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 EMBL:CP000237
GenomeReviews:CP000237_GR InterPro:IPR022967 SMART:SM00316
eggNOG:COG0539 HOGENOM:HOG000044052 KO:K02945 OMA:QLGQDPW
RefSeq:YP_506295.1 ProteinModelPortal:Q2GE01 STRING:Q2GE01
GeneID:3932255 KEGG:nse:NSE_0408 PATRIC:22680873
ProtClustDB:CLSK2527828 BioCyc:NSEN222891:GHFU-431-MONOMER
Uniprot:Q2GE01
Length = 553
Score = 125 (49.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 57/252 (22%), Positives = 107/252 (42%)
Query: 84 EEFHSALEKYDFNSEL---GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F + LE+ F+ L G V+G + LV++ KS +P Q+ H + +
Sbjct: 28 EDFTTILEER-FSDSLIREGDMVEGVIKSISPHFVLVNLGLKSEGKIPVQQ--FHDLGTL 84
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXX 200
E + E+ G S +L+ + +E L D
Sbjct: 85 EVGSKIIVYVEK-TETGSGNLVLSYTKALKQKVWNRLYEM--YLNGSDEDVMGVILYTIK 141
Query: 201 XXXXXXXXXLRGFVPFSQISSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAM--- 255
L F+P S + + ++ L+G L + +++D + ++ +S RKA+
Sbjct: 142 SGCIVEVEGLNAFLPNSHLDVRPVSDPATLVGVKLKFRILKMDPKTGKIFVSRRKALGAV 201
Query: 256 ---ADSQ--AQLGIGSVVIGTVQSLKPYGAFIDI------GGINGLLHVSQISHDRVADI 304
A S+ + + G ++ G V+S+ YG F+ I G ++GLL+V+ IS RV
Sbjct: 202 HEAARSEYISTIKEGDIIDGRVKSIASYGVFVQIHESDKVGVVDGLLYVNDISWARVTHP 261
Query: 305 ATVLQPGDTLKV 316
+++ G ++V
Sbjct: 262 SSIYSVGQEVRV 273
>TAIR|locus:2088644 [details] [associations]
symbol:RRP5 "Ribosomal RNA Processing 5" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0001510 "RNA methylation" evidence=RCA]
[GO:0006606 "protein import into nucleus" evidence=RCA] [GO:0006364
"rRNA processing" evidence=IMP] [GO:0009553 "embryo sac
development" evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005886 EMBL:CP002686
GO:GO:0005730 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 KO:K14792 OMA:LHLADIY
IPI:IPI00527296 RefSeq:NP_187803.4 UniGene:At.50175 PRIDE:F4J8K6
EnsemblPlants:AT3G11964.1 GeneID:820370 KEGG:ath:AT3G11964
Uniprot:F4J8K6
Length = 1896
Score = 107 (42.7 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 19/57 (33%), Positives = 39/57 (68%)
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLK 315
+L +G ++ G ++ ++P+G FIDI G+ GL H+SQ+S DR+ ++ + G++++
Sbjct: 1431 KLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLSDDRMENVQARYKAGESVR 1487
Score = 72 (30.4 bits), Expect = 6.6e-05, Sum P(2) = 6.6e-05
Identities = 38/173 (21%), Positives = 75/173 (43%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV-----PGLKEE 152
+LG+ V G + ++ +V + KS + + + H H E+A ++ PG + +
Sbjct: 633 KLGSIVSGIIDTITSQAVIVRV--KSKSVVKGTISAEHLADHHEQAKLIMSLLRPGYELD 690
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWER---CRQLQSEDXXXXXXXXXXXXXXXXXXXXX 209
+++ + E ++ + LS + +LA E QLQ
Sbjct: 691 KLLVLDIEGNN-MALSSKYSLIKLAEELPSDFNQLQPNSVVHGYVCNLIENGCFVRFLGR 749
Query: 210 LRGFVPFSQI--SSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
L GF P S+ K+ E +G+ + V+V++E+SR+ LS +++ S
Sbjct: 750 LTGFAPRSKAIDDPKADVSESFFVGQSVRANIVDVNQEKSRITLSLKQSSCAS 802
>TIGR_CMR|CPS_2207 [details] [associations]
symbol:CPS_2207 "polyribonucleotide
nucleotidyltransferase" species:167879 "Colwellia psychrerythraea
34H" [GO:0004654 "polyribonucleotide nucleotidyltransferase
activity" evidence=ISS] [GO:0006402 "mRNA catabolic process"
evidence=ISS] HAMAP:MF_01595 InterPro:IPR003029 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012162 InterPro:IPR015848
Pfam:PF00013 Pfam:PF00575 Pfam:PF03726 PIRSF:PIRSF005499
PROSITE:PS50084 PROSITE:PS50126 SMART:SM00322 InterPro:IPR001247
InterPro:IPR015847 Pfam:PF01138 GO:GO:0005737 GO:GO:0003723
GO:GO:0006396 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS HOGENOM:HOG000218326
ProtClustDB:PRK11824 RefSeq:YP_268932.1 ProteinModelPortal:Q482T5
SMR:Q482T5 STRING:Q482T5 GeneID:3518463 KEGG:cps:CPS_2207
PATRIC:21467529 BioCyc:CPSY167879:GI48-2277-MONOMER Uniprot:Q482T5
Length = 705
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 30/107 (28%), Positives = 59/107 (55%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ + D +K EQ+ ++ KA+ A++ +G++ G
Sbjct: 571 KGGATIRQLTEETGTTIEIEDDGTVKIAATSGEQAEDAINRIKALT---AEIEVGTLYTG 627
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +GAF+++ G +GL+H+SQIS +RV +++ VL G +KV
Sbjct: 628 KVVRIVDFGAFVNVLPGKDGLVHISQISEERVNNVSEVLTEGQEVKV 674
>UNIPROTKB|Q3IJ73 [details] [associations]
symbol:pnp "Polyribonucleotide nucleotidyltransferase"
species:326442 "Pseudoalteromonas haloplanktis TAC125" [GO:0005515
"protein binding" evidence=IPI] HAMAP:MF_01595 InterPro:IPR003029
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR009019
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 GO:GO:0006402
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR020568 SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967
SMART:SM00316 SUPFAM:SSF54814 HSSP:Q9UXC2 Pfam:PF03725
SUPFAM:SSF55666 eggNOG:COG1185 HOGENOM:HOG000218327 KO:K00962
GO:GO:0004654 Gene3D:1.10.10.400 PANTHER:PTHR11252 SUPFAM:SSF46915
TIGRFAMs:TIGR03591 OMA:YTMRVVS ProtClustDB:PRK11824 EMBL:CR954246
RefSeq:YP_339522.1 ProteinModelPortal:Q3IJ73 SMR:Q3IJ73
STRING:Q3IJ73 GeneID:3709905 GenomeReviews:CR954246_GR
KEGG:pha:PSHAa1001 PATRIC:32295529
BioCyc:PHAL326442:GJIU-1008-MONOMER Uniprot:Q3IJ73
Length = 708
Score = 122 (48.0 bits), Expect = 0.00019, P = 0.00019
Identities = 31/107 (28%), Positives = 57/107 (53%)
Query: 211 RGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIG 270
+G Q++ ++ +G D +K D E + +S + + A+L +G++ G
Sbjct: 573 KGGATIRQLTEETGTTIEIGDDGTIKIAATDGESAANAISRIEQLT---AELEVGTIYEG 629
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +GAF++I G +GL+H+SQIS +RV ++ L G +KV
Sbjct: 630 KVVRIVDFGAFVNILPGKDGLVHISQISTERVNNVTDHLSEGQEVKV 676
>TAIR|locus:2119946 [details] [associations]
symbol:emb2726 "embryo defective 2726" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003746 "translation elongation factor activity"
evidence=IEA;ISS] [GO:0006414 "translational elongation"
evidence=IEA;ISS] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009902 "chloroplast
relocation" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0042744
"hydrogen peroxide catabolic process" evidence=RCA] HAMAP:MF_00050
InterPro:IPR000449 InterPro:IPR001816 InterPro:IPR003029
InterPro:IPR009060 InterPro:IPR014039 InterPro:IPR018101
Pfam:PF00575 Pfam:PF00627 Pfam:PF00889 PROSITE:PS01126
PROSITE:PS01127 PROSITE:PS50126 GO:GO:0046686 GO:GO:0009570
EMBL:CP002687 EMBL:AL078470 EMBL:AL161574 GO:GO:0009941
GO:GO:0003746 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
SUPFAM:SSF46934 InterPro:IPR022967 SMART:SM00316 KO:K02357
Gene3D:3.30.479.20 PANTHER:PTHR11741 SUPFAM:SSF54713
TIGRFAMs:TIGR00116 HSSP:P43895 EMBL:AY056792 IPI:IPI00541725
PIR:T08961 RefSeq:NP_567820.1 UniGene:At.21764
ProteinModelPortal:Q9SZD6 SMR:Q9SZD6 STRING:Q9SZD6 PRIDE:Q9SZD6
ProMEX:Q9SZD6 EnsemblPlants:AT4G29060.1 GeneID:829027
KEGG:ath:AT4G29060 TAIR:At4g29060 HOGENOM:HOG000244107
InParanoid:Q9SZD6 OMA:DDLAMQV PhylomeDB:Q9SZD6
Genevestigator:Q9SZD6 Uniprot:Q9SZD6
Length = 953
Score = 118 (46.6 bits), Expect = 0.00075, P = 0.00075
Identities = 23/55 (41%), Positives = 39/55 (70%)
Query: 265 GSVVIGTVQSLKPYGAFIDIGGI-NGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G+ G V++++P+GAF+D G +GL+HVSQ+S + V D+++V+ G +KV L
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGLVHVSQLSDNFVKDVSSVVTIGQEVKVRL 190
>UNIPROTKB|Q724J5 [details] [associations]
symbol:LMOf2365_0229 "RNA-binding protein" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR003029 Pfam:PF00575
PROSITE:PS50126 GO:GO:0003723 EMBL:AE017262
GenomeReviews:AE017262_GR Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 eggNOG:COG1098
HOGENOM:HOG000217052 RefSeq:YP_012839.1 ProteinModelPortal:Q724J5
STRING:Q724J5 GeneID:2797347 KEGG:lmf:LMOf2365_0229 PATRIC:20321637
KO:K07571 OMA:TGITHFG ProtClustDB:PRK08582 Uniprot:Q724J5
Length = 142
Score = 99 (39.9 bits), Expect = 0.00081, P = 0.00081
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD--TLKV 316
+G+ + G V + +GAF+++ GG GL+H+S+++ + V DI +L GD T+KV
Sbjct: 5 VGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVKDINDILTVGDEVTVKV 60
>TIGR_CMR|GSU_1593 [details] [associations]
symbol:GSU_1593 "polyribonucleotide
nucleotidyltransferase" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0004654
"polyribonucleotide nucleotidyltransferase activity" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] HAMAP:MF_01595
InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012162 InterPro:IPR015848 Pfam:PF00013 Pfam:PF00575
Pfam:PF03726 PIRSF:PIRSF005499 PROSITE:PS50084 PROSITE:PS50126
SMART:SM00322 InterPro:IPR001247 InterPro:IPR015847 Pfam:PF01138
GO:GO:0005737 GO:GO:0003723 GO:GO:0006396 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0006402 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR020568
SUPFAM:SSF54211 GO:GO:0000175 InterPro:IPR022967 SMART:SM00316
HSSP:P05055 Pfam:PF03725 SUPFAM:SSF55666 eggNOG:COG1185
HOGENOM:HOG000218327 KO:K00962 GO:GO:0004654 Gene3D:1.10.10.400
PANTHER:PTHR11252 SUPFAM:SSF46915 TIGRFAMs:TIGR03591 OMA:YTMRVVS
ProtClustDB:PRK11824 RefSeq:NP_952644.4 ProteinModelPortal:Q74CS9
GeneID:2687125 KEGG:gsu:GSU1593 PATRIC:22026031
BioCyc:GSUL243231:GH27-1537-MONOMER Uniprot:Q74CS9
Length = 697
Score = 116 (45.9 bits), Expect = 0.00085, P = 0.00085
Identities = 24/68 (35%), Positives = 43/68 (63%)
Query: 253 KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPG 311
K + D A+ G + +GTV+ + +GAF++I G +GL+H+S++ +RV ++ VL G
Sbjct: 608 KMIRDLTAEAEEGKLYMGTVKKVMDFGAFVEIFPGTDGLVHISELDTERVKNVTDVLNEG 667
Query: 312 DTLKV-CL 318
D + V C+
Sbjct: 668 DKVLVKCI 675
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.133 0.368 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 318 297 0.00093 115 3 11 22 0.40 34
33 0.44 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 592 (63 KB)
Total size of DFA: 184 KB (2107 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.80u 0.11s 23.91t Elapsed: 00:00:01
Total cpu time: 23.81u 0.11s 23.92t Elapsed: 00:00:01
Start: Fri May 10 22:12:10 2013 End: Fri May 10 22:12:11 2013