BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021034
(318 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|133872|sp|P29344.1|RR1_SPIOL RecName: Full=30S ribosomal protein S1, chloroplastic; AltName:
Full=CS1; Flags: Precursor
gi|18060|emb|CAA46927.1| ribosomal protein S1 [Spinacia oleracea]
gi|170143|gb|AAA34045.1| chloroplast ribosomal protein S1 [Spinacia oleracea]
Length = 411
Score = 524 bits (1349), Expect = e-146, Method: Compositional matrix adjust.
Identities = 255/319 (79%), Positives = 290/319 (90%), Gaps = 6/319 (1%)
Query: 1 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
MA+LAQQ G LRCPP+S++ LS+ S + L R + IVSAVA+SNA+TRER++
Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS----PKHTLKPRFS-PIVSAVAVSNAQTRERQK 55
Query: 60 LNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDI
Sbjct: 56 LKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDI 115
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
TAKSSAYLP EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWE
Sbjct: 116 TAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWE 175
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
RCRQLQ+EDVVVKGK+VGANKGGVVA VEGLRGFVPFSQISSKS+AEELL K++PLKFVE
Sbjct: 176 RCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVE 235
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 236 VDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 295
Query: 300 RVADIATVLQPGDTLKVCL 318
RV+DIATVLQPGDTLKV +
Sbjct: 296 RVSDIATVLQPGDTLKVMI 314
>gi|225432062|ref|XP_002280604.1| PREDICTED: 30S ribosomal protein S1, chloroplastic [Vitis vinifera]
gi|296083203|emb|CBI22839.3| unnamed protein product [Vitis vinifera]
Length = 410
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/318 (82%), Positives = 287/318 (90%), Gaps = 5/318 (1%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA LAQQFTGLRCPPIS +RLS+ S Q Q+ IVSAVAISNA+T+ER +L
Sbjct: 1 MACLAQQFTGLRCPPISSSRLSKPFSPKQPQKPSF-----VRIVSAVAISNAQTKERLKL 55
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
++FE+AYERCRTAP EGVSF+ ++F+SAL+KYDFNSE+GTKVKGTVFCTD GALVDIT
Sbjct: 56 KEMFEDAYERCRTAPTEGVSFSADDFYSALDKYDFNSEIGTKVKGTVFCTDTNGALVDIT 115
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYLP EACIHKIKHVEEAGIVPG++EEFVIIGENEADDSL+LSLR IQY+LAWER
Sbjct: 116 AKSSAYLPVYEACIHKIKHVEEAGIVPGVREEFVIIGENEADDSLILSLRSIQYDLAWER 175
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVVKGKVVGANKGGVVA VEGLRGFVPFSQISSK+TAEELL K+LP+KFVEV
Sbjct: 176 CRQLQAEDVVVKGKVVGANKGGVVALVEGLRGFVPFSQISSKTTAEELLDKELPVKFVEV 235
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 236 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 295
Query: 301 VADIATVLQPGDTLKVCL 318
V+DIATVLQPGD LKV +
Sbjct: 296 VSDIATVLQPGDILKVMI 313
>gi|255556496|ref|XP_002519282.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
gi|223541597|gb|EEF43146.1| tex protein-relatedtranscription accessory protein, putative
[Ricinus communis]
Length = 412
Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust.
Identities = 262/319 (82%), Positives = 291/319 (91%), Gaps = 4/319 (1%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQFTGLRC +S+ R++++ S + RK++ +VSAVAISNA+T+ERE+L
Sbjct: 1 MASLAQQFTGLRCTALSNCRVTKKASSLLSSSR---PRKSRFVVSAVAISNAQTKEREKL 57
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLFE+AYERCRTAPMEGV+FT E+FHSALEKYDFNSE+GT VKGTVF TD GA+VDIT
Sbjct: 58 KQLFEDAYERCRTAPMEGVAFTAEDFHSALEKYDFNSEIGTTVKGTVFMTDANGAVVDIT 117
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYLP QEACIHKIKHVEEAGIVPGL +EFVIIGENEADDSL+LSLR IQY+L+WER
Sbjct: 118 AKSSAYLPVQEACIHKIKHVEEAGIVPGLTQEFVIIGENEADDSLILSLRAIQYDLSWER 177
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
CRQLQ+EDV+VKGKVVGANKGGVVA VE GLRGFVPFSQISSKSTAEELL K+LPLKFV+
Sbjct: 178 CRQLQAEDVIVKGKVVGANKGGVVAIVEGGLRGFVPFSQISSKSTAEELLEKELPLKFVD 237
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 238 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 297
Query: 300 RVADIATVLQPGDTLKVCL 318
RV+DIATVLQPGDTLKV +
Sbjct: 298 RVSDIATVLQPGDTLKVMI 316
>gi|224099083|ref|XP_002311368.1| predicted protein [Populus trichocarpa]
gi|118485696|gb|ABK94698.1| unknown [Populus trichocarpa]
gi|222851188|gb|EEE88735.1| predicted protein [Populus trichocarpa]
Length = 421
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 255/318 (80%), Positives = 282/318 (88%), Gaps = 3/318 (0%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQF GLRCPPIS +RL+ R + ++ N AVAISNA+T+ERE+L
Sbjct: 1 MASLAQQFAGLRCPPISISRLTERAATFSKPKRAANF---VVTAKAVAISNAQTKEREKL 57
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLFEEAYERCRTAPMEGVSFT+E+FHSAL+ YDFNSE+GT+VKGTVF TDN GALVDIT
Sbjct: 58 KQLFEEAYERCRTAPMEGVSFTVEDFHSALDAYDFNSEIGTRVKGTVFMTDNNGALVDIT 117
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYLP QEA IH+IK +EEAGIVPG++EEFVIIGENEADDSL+LSLR I YELAWER
Sbjct: 118 AKSSAYLPVQEASIHRIKRLEEAGIVPGMREEFVIIGENEADDSLILSLRSIHYELAWER 177
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDV+VKGKVVG NKGG+VA VEGLRGFVPFSQISSKST EELL K+ PLKFV+V
Sbjct: 178 CRQLQAEDVIVKGKVVGGNKGGLVAVVEGLRGFVPFSQISSKSTPEELLDKEFPLKFVDV 237
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQSRL+LSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 238 DEEQSRLILSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 297
Query: 301 VADIATVLQPGDTLKVCL 318
V+DIATVLQPGDTLKV +
Sbjct: 298 VSDIATVLQPGDTLKVMI 315
>gi|449459770|ref|XP_004147619.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
gi|449517357|ref|XP_004165712.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Cucumis
sativus]
Length = 413
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 253/321 (78%), Positives = 286/321 (89%), Gaps = 7/321 (2%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAV---AISNAETRER 57
MA++AQQFTGLRC P+S +RLS+ S + LN ++ + +AV I + +TRER
Sbjct: 1 MASMAQQFTGLRCAPLSSSRLSKPFS----SKHFLNKSRSLPVQAAVISGPIPSPQTRER 56
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
+L ++FEEAYERCR AP+EG+SFTLE+FH+ALEKYDF+SELGTKVKGTVFCTDN GALV
Sbjct: 57 FKLKEVFEEAYERCRNAPVEGISFTLEDFHAALEKYDFDSELGTKVKGTVFCTDNNGALV 116
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
DITAKSSAYLP QEACIH+IKHVEEAG+ PGL+EEFVIIGENE+DDSL+LSLR IQY+LA
Sbjct: 117 DITAKSSAYLPLQEACIHRIKHVEEAGVFPGLREEFVIIGENESDDSLILSLRSIQYDLA 176
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKF 237
WERCRQLQ+EDVVVKGKVV ANKGGVVA VEGLRGFVPFSQIS+KS AEELL K+LPLKF
Sbjct: 177 WERCRQLQAEDVVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKF 236
Query: 238 VEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
VEVDEEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQIS
Sbjct: 237 VEVDEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQIS 296
Query: 298 HDRVADIATVLQPGDTLKVCL 318
HDR++DIATVLQPGD+LKV +
Sbjct: 297 HDRISDIATVLQPGDSLKVMI 317
>gi|224112036|ref|XP_002316061.1| predicted protein [Populus trichocarpa]
gi|222865101|gb|EEF02232.1| predicted protein [Populus trichocarpa]
Length = 412
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/318 (78%), Positives = 281/318 (88%), Gaps = 3/318 (0%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQF GL CPP+S +RL+ R + ++ NS AVAISN +T+ER +L
Sbjct: 1 MASLAQQFAGLICPPLSSSRLTERAATFSKPKRAANS---VVTAKAVAISNVQTKERHKL 57
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
+LFEEAYERCRTAP+EGVSFTLE+FH+AL+ YD+NSE+GT+VKGTVF TDN GA VDIT
Sbjct: 58 KELFEEAYERCRTAPLEGVSFTLEDFHAALDTYDYNSEIGTRVKGTVFMTDNNGAFVDIT 117
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYLP QEA IHKIK VEEAGIVPG++EEFVIIGENEADDSL+LSLR IQYELAWER
Sbjct: 118 AKSSAYLPVQEASIHKIKRVEEAGIVPGMREEFVIIGENEADDSLILSLRSIQYELAWER 177
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+ED +VKGKVVG N+GGVVA VEGL+GFVPFSQISSKS+AEELL K++PLKFV+V
Sbjct: 178 CRQLQAEDAIVKGKVVGGNRGGVVAVVEGLQGFVPFSQISSKSSAEELLDKEVPLKFVDV 237
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQSRLVLSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 238 DEEQSRLVLSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 297
Query: 301 VADIATVLQPGDTLKVCL 318
V+DI+TVLQPGDTLKV +
Sbjct: 298 VSDISTVLQPGDTLKVMI 315
>gi|297813179|ref|XP_002874473.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
gi|297320310|gb|EFH50732.1| hypothetical protein ARALYDRAFT_489681 [Arabidopsis lyrata subsp.
lyrata]
Length = 416
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 239/318 (75%), Positives = 282/318 (88%), Gaps = 1/318 (0%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQFTGLRC P+S + R Q ++ + TIV+AVAIS+ +T+ER EL
Sbjct: 1 MASLAQQFTGLRCSPLSSSSRLSRSVSKNFPQNK-SASVSPTIVAAVAISSGQTKERLEL 59
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
++FE+AYERCRTAPMEGV+F++++F +A+E+YDFNSE+GT+VKGTVF TD GALVDI+
Sbjct: 60 KKMFEDAYERCRTAPMEGVAFSVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDIS 119
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYL ++ACIH+IKHVEEAGIVPG+ EEFVIIGENE+DDSL+LSLR IQYELAWER
Sbjct: 120 AKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWER 179
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQISSK+ AEELL K++PLKFVEV
Sbjct: 180 CRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEV 239
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 240 DEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDR 299
Query: 301 VADIATVLQPGDTLKVCL 318
V+DIATVLQPGDTLKV +
Sbjct: 300 VSDIATVLQPGDTLKVMI 317
>gi|30692346|ref|NP_850903.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
gi|13877939|gb|AAK44047.1|AF370232_1 putative ribosomal protein S1 [Arabidopsis thaliana]
gi|16649089|gb|AAL24396.1| Unknown protein [Arabidopsis thaliana]
gi|21593804|gb|AAM65771.1| ribosomal protein S1 [Arabidopsis thaliana]
gi|23296539|gb|AAN13122.1| putative ribosomal protein S1 [Arabidopsis thaliana]
gi|332006494|gb|AED93877.1| small subunit ribosomal protein S1 [Arabidopsis thaliana]
Length = 416
Score = 478 bits (1229), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/318 (74%), Positives = 284/318 (89%), Gaps = 1/318 (0%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQF+GLRC P+S + R++ Q ++ + TIV+AVA+S+ +T+ER EL
Sbjct: 1 MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNK-SASVSPTIVAAVAMSSGQTKERLEL 59
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
++FE+AYERCRT+PMEGV+FT+++F +A+E+YDFNSE+GT+VKGTVF TD GALVDI+
Sbjct: 60 KKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDIS 119
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYL ++ACIH+IKHVEEAGIVPG+ EEFVIIGENE+DDSL+LSLR IQYELAWER
Sbjct: 120 AKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWER 179
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQISSK+ AEELL K++PLKFVEV
Sbjct: 180 CRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEV 239
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 240 DEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDR 299
Query: 301 VADIATVLQPGDTLKVCL 318
V+DIATVLQPGDTLKV +
Sbjct: 300 VSDIATVLQPGDTLKVMI 317
>gi|227204349|dbj|BAH57026.1| AT5G30510 [Arabidopsis thaliana]
Length = 378
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 237/318 (74%), Positives = 284/318 (89%), Gaps = 1/318 (0%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQQF+GLRC P+S + R++ Q ++ + TIV+AVA+S+ +T+ER EL
Sbjct: 1 MASLAQQFSGLRCSPLSSSSRLSRRASKNFPQNK-SASVSPTIVAAVAMSSGQTKERLEL 59
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
++FE+AYERCRT+PMEGV+FT+++F +A+E+YDFNSE+GT+VKGTVF TD GALVDI+
Sbjct: 60 KKMFEDAYERCRTSPMEGVAFTVDDFAAAIEQYDFNSEIGTRVKGTVFKTDANGALVDIS 119
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKSSAYL ++ACIH+IKHVEEAGIVPG+ EEFVIIGENE+DDSL+LSLR IQYELAWER
Sbjct: 120 AKSSAYLSVEQACIHRIKHVEEAGIVPGMVEEFVIIGENESDDSLLLSLRNIQYELAWER 179
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQISSK+ AEELL K++PLKFVEV
Sbjct: 180 CRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEELLEKEIPLKFVEV 239
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 240 DEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFIDIGGINGLLHVSQISHDR 299
Query: 301 VADIATVLQPGDTLKVCL 318
V+DIATVLQPGDTLKV +
Sbjct: 300 VSDIATVLQPGDTLKVMI 317
>gi|358248430|ref|NP_001239880.1| uncharacterized protein LOC100812847 [Glycine max]
gi|255635364|gb|ACU18035.1| unknown [Glycine max]
Length = 412
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 223/291 (76%), Positives = 256/291 (87%), Gaps = 4/291 (1%)
Query: 28 TQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFH 87
TQ QK R + TI +++AI+NA+ +ER L +LFEEAYERCR APMEGVSFT+E+F
Sbjct: 29 TQQSQK----RVSITIANSIAIANAQNKERARLKKLFEEAYERCRNAPMEGVSFTIEDFT 84
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+AL+KYDF+SE+G K+KGTVF TDN GA+VDITAKSSAYLP QEACIH++KHVEEAG+VP
Sbjct: 85 AALDKYDFDSEVGGKIKGTVFYTDNNGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVP 144
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
G KEEF+IIGEN DDSLVLSLR +Q++LAWERCRQLQ+EDV VKGK+VG NKGGVVAE+
Sbjct: 145 GFKEEFLIIGENSIDDSLVLSLRSLQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAEL 204
Query: 208 EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSV 267
EGLRGFVP SQIS+ S EELL K+LPLKFVEVDEEQSRLVLSNRKA+A +QAQLGIGSV
Sbjct: 205 EGLRGFVPLSQISTNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSV 264
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V G+VQSLKPYGAFIDIGGINGLLHVSQISHDRV DI+TVLQPGD LKV +
Sbjct: 265 VTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDILKVMI 315
>gi|321437419|gb|ADW83720.1| ribosomal protein S4 [Musa acuminata AAA Group]
Length = 415
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 239/313 (76%), Positives = 271/313 (86%)
Query: 6 QQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFE 65
QF GLRCPP+S + LS+ S + S + +++ + +ER++L ++FE
Sbjct: 7 HQFAGLRCPPLSSSPLSKPSSAASSKAPARPSFCSAAVIAGTYALTSAQKERQKLKEVFE 66
Query: 66 EAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSA 125
EAY+RCRTAPMEGV+FT+E+FHSALEKYDF+SE+GTKVKGTVF TD GALVDITAKSSA
Sbjct: 67 EAYDRCRTAPMEGVAFTVEDFHSALEKYDFDSEIGTKVKGTVFMTDMNGALVDITAKSSA 126
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
YLP QEACIHKIKHV EAGI PGL EEFVIIGE ADDSL+LSLR IQY+LAWERCRQLQ
Sbjct: 127 YLPVQEACIHKIKHVSEAGIYPGLVEEFVIIGEMNADDSLILSLRSIQYDLAWERCRQLQ 186
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
+EDV+VKGKVVG NKGGVVA VEGLRGFVPFSQIS+KSTAEEL+ K+LPLKFVEVDEEQS
Sbjct: 187 AEDVIVKGKVVGGNKGGVVAIVEGLRGFVPFSQISAKSTAEELIDKELPLKFVEVDEEQS 246
Query: 246 RLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
RLVLSNRKAMADSQAQLGIGSVV+GTVQSLKPYGAF+DIGGINGLLHVSQISHDRV+DI+
Sbjct: 247 RLVLSNRKAMADSQAQLGIGSVVLGTVQSLKPYGAFVDIGGINGLLHVSQISHDRVSDIS 306
Query: 306 TVLQPGDTLKVCL 318
TVLQPGDTLKV +
Sbjct: 307 TVLQPGDTLKVMI 319
>gi|356532488|ref|XP_003534804.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 402
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/318 (69%), Positives = 262/318 (82%), Gaps = 13/318 (4%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA A Q LRC R + Q QQ+ R+ +V ++AI NA+ +ER +L
Sbjct: 1 MAMTASQ---LRC------GWGWRPTPNQQQQR----RRMVPVVCSIAIENAKNKERAKL 47
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
+LF+EAYERCRTAP EGVSFTL++F AL+KYDFN+E+GTKVKGTVF TDN GA VDIT
Sbjct: 48 KKLFDEAYERCRTAPTEGVSFTLQQFTDALDKYDFNAEMGTKVKGTVFATDNNGAYVDIT 107
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
AKS+AYLP EACIH+IK+VEEAGI+PG++EEF+II EN+ADD+L+LSLR IQY++AWER
Sbjct: 108 AKSTAYLPLHEACIHRIKNVEEAGIIPGVREEFMIIDENQADDTLILSLRSIQYDIAWER 167
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQL++ED VVKGKVV ANKGG+VA+VEGL+GFVPFSQISSKS EELL +P KFVEV
Sbjct: 168 CRQLKAEDAVVKGKVVNANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEHVIPFKFVEV 227
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQSRLVLS+RKA+A+SQ QLGIGSVV G+VQS+KPYGAFIDIGGI+GLLHVSQISHDR
Sbjct: 228 DEEQSRLVLSHRKAVAESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDR 287
Query: 301 VADIATVLQPGDTLKVCL 318
+ DI TVLQPGD LKV +
Sbjct: 288 ITDIETVLQPGDILKVMI 305
>gi|356558105|ref|XP_003547348.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like [Glycine
max]
Length = 399
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 212/302 (70%), Positives = 257/302 (85%), Gaps = 5/302 (1%)
Query: 17 SHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPM 76
S R R + Q Q+ R+ +V ++AI NA+ +ER +L +LFEEAYERCRTAP
Sbjct: 6 SQLRWGWRPTPKQQQR-----RRMVPVVCSIAIKNAQNKERAKLKKLFEEAYERCRTAPT 60
Query: 77 EGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
EGVSFT+++F AL+KYDF++E+GTKVKGTVF TDN GA VDITAKS+AYLP EACIH+
Sbjct: 61 EGVSFTIQQFTDALDKYDFDAEMGTKVKGTVFATDNSGAYVDITAKSTAYLPLHEACIHR 120
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
IK+VEEAGI+PG++EEF+II EN+ADD+L+LSLR IQY++AWERCRQL++ED VVKGKV+
Sbjct: 121 IKNVEEAGIIPGMREEFMIIDENQADDTLILSLRSIQYDIAWERCRQLKAEDAVVKGKVI 180
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
ANKGG+VA+VEGL+GFVPFSQISSKS EELL + +P KFVEVDEEQSRLVLS+RKA+A
Sbjct: 181 NANKGGLVAQVEGLKGFVPFSQISSKSAGEELLEQVIPFKFVEVDEEQSRLVLSHRKAVA 240
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+SQ QLGIGSVV G+VQS+KPYGAFIDIGGI+GLLHVSQISHDR+ DI TVLQPGD LKV
Sbjct: 241 ESQGQLGIGSVVTGSVQSIKPYGAFIDIGGISGLLHVSQISHDRITDIETVLQPGDVLKV 300
Query: 317 CL 318
+
Sbjct: 301 MI 302
>gi|357448761|ref|XP_003594656.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
gi|355483704|gb|AES64907.1| hypothetical protein MTR_2g033020 [Medicago truncatula]
Length = 407
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/319 (65%), Positives = 259/319 (81%), Gaps = 11/319 (3%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA++AQQ T + P L + + TQ ++ + IV ++AIS+A +ER +L
Sbjct: 1 MASVAQQLTSTKWSP-----LLCKPTTTQTHKQ-----RRPGIVCSIAISSANNKERAKL 50
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
+LF AYERCR APMEGVSFTL++F LEKYD+ SE+GTKVKGTVF T+ GA VDIT
Sbjct: 51 KELFYNAYERCRNAPMEGVSFTLDQFTETLEKYDYESEIGTKVKGTVFGTETSGAFVDIT 110
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+AYLP EA ++K++HVEEAGI PG+KEEFVI+G+NE DD ++LSLR IQ+ELAWER
Sbjct: 111 SKSTAYLPLYEASLYKLRHVEEAGIFPGVKEEFVIVGQNEIDDGMILSLRDIQFELAWER 170
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+ED VVKGK++ ANKGGVVAEVEGL+GFVPFSQ+S+KS EE++ ++PLKFVEV
Sbjct: 171 CRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKSPGEEIIEFEVPLKFVEV 230
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
D+EQ+RLVLS+RKA+A Q QLGIGSVV GTVQSLKPYGAFIDI GGI+GLLHVSQISHD
Sbjct: 231 DQEQARLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGAFIDIGGGISGLLHVSQISHD 290
Query: 300 RVADIATVLQPGDTLKVCL 318
R++DI TVLQPGDTLKV +
Sbjct: 291 RISDIVTVLQPGDTLKVMI 309
>gi|388491680|gb|AFK33906.1| unknown [Medicago truncatula]
Length = 409
Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/319 (65%), Positives = 258/319 (80%), Gaps = 11/319 (3%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA++AQQ T + P L + + TQ ++ + IV ++AIS+A +ER +L
Sbjct: 3 MASVAQQLTSTKWSP-----LLCKPTTTQTHKQ-----RRPGIVCSIAISSANNKERAKL 52
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
+LF AYERCR APMEGVSFTL++F LEKYD+ SE+GTKVKGTVF T+ GA VDIT
Sbjct: 53 KELFYNAYERCRNAPMEGVSFTLDQFTETLEKYDYESEIGTKVKGTVFGTETSGAFVDIT 112
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+AYLP EA ++K++HVEEAGI PG+KEEFVI+G+NE DD ++LSLR IQ+ELAWER
Sbjct: 113 SKSTAYLPLYEASLYKLRHVEEAGIFPGVKEEFVIVGQNEIDDGMILSLRDIQFELAWER 172
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+ED VVKGK++ ANKGGVVAEVEGL+GFVPFSQ+S+KS EE++ ++PLKFVEV
Sbjct: 173 CRQLQAEDAVVKGKIIDANKGGVVAEVEGLKGFVPFSQMSTKSPGEEIIEFEVPLKFVEV 232
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
D+EQ+RLVLS+RKA+A Q QLGIGSVV GTVQSLKPYGA IDI GGI+GLLHVSQISHD
Sbjct: 233 DQEQARLVLSHRKAVAGIQGQLGIGSVVTGTVQSLKPYGALIDIGGGISGLLHVSQISHD 292
Query: 300 RVADIATVLQPGDTLKVCL 318
R++DI TVLQPGDTLKV +
Sbjct: 293 RISDIVTVLQPGDTLKVMI 311
>gi|108707824|gb|ABF95619.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|125543627|gb|EAY89766.1| hypothetical protein OsI_11307 [Oryza sativa Indica Group]
Length = 402
Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/318 (66%), Positives = 252/318 (79%), Gaps = 10/318 (3%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL PP+S R + T R + + A++ E RERE +
Sbjct: 1 MASLAQHVAGLASPPLSGAPRRRPAAPT---------RPSALVCGTYALTK-EERERERM 50
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLF+EA ERCRTAPMEGVSF+ E+ SA+E D ++++G+ +KGTVF T + GA VDI
Sbjct: 51 CQLFDEASERCRTAPMEGVSFSPEDLDSAVESTDIDTDIGSLIKGTVFMTTSNGAYVDIQ 110
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+A+LP EAC+ + H+EEAGI GL EEF+II EN D++L+LSL+ IQ +LAWER
Sbjct: 111 SKSTAFLPLDEACLLDVNHIEEAGIRAGLVEEFMIIDENPGDETLILSLQAIQQDLAWER 170
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA VEGL+GFVPFSQ+SSKSTAEELL K+LPLKFVEV
Sbjct: 171 CRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEV 230
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 231 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 290
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 291 VADISTVLQPGDTLKVMI 308
>gi|357112501|ref|XP_003558047.1| PREDICTED: 30S ribosomal protein S1, chloroplastic-like
[Brachypodium distachyon]
Length = 401
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/318 (63%), Positives = 251/318 (78%), Gaps = 11/318 (3%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+L Q GL CPP+S SRR + +V + + + +ERE +
Sbjct: 1 MASLVQHVAGLACPPLSGA--SRRPGAPM---------RPSALVCGTYVLSKDEKERERM 49
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLF+EA ERCRTAPMEG++F+ E+ SA+E D ++++G+ +KGTVF T + GA VDI
Sbjct: 50 RQLFDEASERCRTAPMEGITFSPEDLESAVETTDIDTDIGSLIKGTVFMTTSNGAFVDIQ 109
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+K++A+LP EAC+ I H+EEAGI PGL E+F+II EN D++L+LSL+ IQ +LAWER
Sbjct: 110 SKATAFLPIDEACLLDIDHIEEAGIRPGLVEQFMIIDENPGDETLILSLQSIQQDLAWER 169
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVV+ GKV+G NKGGVVA VEGL+ FVPFSQ+SSK+TA+ELL K++PLKFVEV
Sbjct: 170 CRQLQAEDVVITGKVIGGNKGGVVALVEGLKAFVPFSQVSSKTTADELLDKEIPLKFVEV 229
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 230 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 289
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 290 VADISTVLQPGDTLKVMI 307
>gi|242035925|ref|XP_002465357.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
gi|241919211|gb|EER92355.1| hypothetical protein SORBIDRAFT_01g037100 [Sorghum bicolor]
Length = 400
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/318 (65%), Positives = 253/318 (79%), Gaps = 9/318 (2%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL CPP+S R + + L + A++ E RERE +
Sbjct: 1 MASLAQHVAGLPCPPLSGASRRRPAAQRRPPSAL--------VCGTYALTKDE-RERERM 51
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLFE+A +RCRTAPM+GV+F+ ++ +A+E D ++E+G+ +KGTVF T + GA +DI
Sbjct: 52 RQLFEDAADRCRTAPMDGVAFSPDDLDTAVESTDIDTEIGSLIKGTVFMTTSNGAYIDIQ 111
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+A+LP EAC+ I +VEEAGI PGL EEF+II EN D++L+LSL+ IQ ELAWER
Sbjct: 112 SKSTAFLPLDEACLLDIDNVEEAGIRPGLVEEFMIIDENPGDETLILSLQAIQQELAWER 171
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA VEGL+GFVPFSQ+SSK+TAEELL K+LPLK+VEV
Sbjct: 172 CRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKTTAEELLDKELPLKYVEV 231
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 232 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 291
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 292 VADISTVLQPGDTLKVMI 309
>gi|115452675|ref|NP_001049938.1| Os03g0315800 [Oryza sativa Japonica Group]
gi|113548409|dbj|BAF11852.1| Os03g0315800, partial [Oryza sativa Japonica Group]
Length = 390
Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/266 (74%), Positives = 231/266 (86%)
Query: 53 ETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDN 112
E RERE + QLF+EA ERCRTAPMEGVSF+ E+ SA+E D ++++G+ +KGTVF T +
Sbjct: 31 EERERERMCQLFDEASERCRTAPMEGVSFSPEDLDSAVESTDIDTDIGSLIKGTVFMTTS 90
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172
GA VDI +KS+A+LP EAC+ + H+EEAGI GL EEF+II EN D++L+LSL+ I
Sbjct: 91 NGAYVDIQSKSTAFLPLDEACLLDVNHIEEAGIRAGLVEEFMIIDENPGDETLILSLQAI 150
Query: 173 QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKD 232
Q +LAWERCRQLQ+EDVVV GKV+G NKGGVVA VEGL+GFVPFSQ+SSKSTAEELL K+
Sbjct: 151 QQDLAWERCRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKE 210
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
LPLKFVEVDEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLH
Sbjct: 211 LPLKFVEVDEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLH 270
Query: 293 VSQISHDRVADIATVLQPGDTLKVCL 318
VSQISHDRVADI+TVLQPGDTLKV +
Sbjct: 271 VSQISHDRVADISTVLQPGDTLKVMI 296
>gi|413955874|gb|AFW88523.1| 30S ribosomal protein S1 [Zea mays]
Length = 401
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/318 (65%), Positives = 253/318 (79%), Gaps = 9/318 (2%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL CPP+S R + + L + A++ E RERE +
Sbjct: 1 MASLAQHVAGLPCPPLSGASRRRPAAQRRPPSAL--------VCGTYALTKDE-RERERM 51
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
Q+F++A ERCRTAPMEGV+F+ ++ +A+E D ++E+G+ +KGTVF T + GA +DI
Sbjct: 52 RQVFDDASERCRTAPMEGVAFSPDDLDTAVESTDIDTEIGSLIKGTVFMTTSNGAYIDIQ 111
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+A+LP EAC+ I +VEEAGI PGL EEF+II EN D++L+LSL+ IQ ELAWER
Sbjct: 112 SKSTAFLPLDEACLLDIDNVEEAGIRPGLVEEFMIIDENPGDETLILSLQAIQQELAWER 171
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA V+GL+GFVPFSQ+SSK+TAEELL K+LPLKFVEV
Sbjct: 172 CRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTTAEELLEKELPLKFVEV 231
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 232 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 291
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 292 VADISTVLQPGDTLKVMI 309
>gi|226501992|ref|NP_001150148.1| LOC100283777 [Zea mays]
gi|194703708|gb|ACF85938.1| unknown [Zea mays]
gi|195637122|gb|ACG38029.1| 30S ribosomal protein S1 [Zea mays]
gi|223948553|gb|ACN28360.1| unknown [Zea mays]
Length = 401
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 208/318 (65%), Positives = 253/318 (79%), Gaps = 9/318 (2%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL CPP+S R + + L + A++ E RERE +
Sbjct: 1 MASLAQHVAGLPCPPLSGASRRRPAAQRRPPSAL--------VCGTYALTKDE-RERERM 51
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
Q+F++A ERCRTAPMEGV+F+ ++ +A+E D ++E+G+ +KGTVF T + GA +DI
Sbjct: 52 RQVFDDASERCRTAPMEGVAFSPDDLDTAVESTDIDTEIGSLIKGTVFMTTSNGAYIDIQ 111
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+A+LP EAC+ I +VEEAGI PGL EEF+II EN D++L+LSL+ IQ ELAWER
Sbjct: 112 SKSTAFLPLDEACLLDIDNVEEAGIRPGLVEEFMIIDENPGDETLILSLQAIQQELAWER 171
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA V+GL+GFVPFSQ+SSK+TAEELL K+LPLKFVEV
Sbjct: 172 CRQLQAEDVVVTGKVIGGNKGGVVALVDGLKGFVPFSQVSSKTTAEELLEKELPLKFVEV 231
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 232 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 291
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 292 VADISTVLQPGDTLKVMI 309
>gi|222624814|gb|EEE58946.1| hypothetical protein OsJ_10622 [Oryza sativa Japonica Group]
Length = 382
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/318 (62%), Positives = 237/318 (74%), Gaps = 30/318 (9%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL PP+S R + T R + + A++ E RERE +
Sbjct: 1 MASLAQHVAGLASPPLSGAPRRRPAAPT---------RPSALVCGTYALTK-EERERERM 50
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLF+EA ERCRTAPMEGVSF+ E+ SA+E D ++++G+
Sbjct: 51 CQLFDEASERCRTAPMEGVSFSPEDLDSAVESTDIDTDIGSL------------------ 92
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
S+A+LP EAC+ + H+EEAGI GL EEF+II EN D++L+LSL+ IQ +LAWER
Sbjct: 93 --STAFLPLDEACLLDVNHIEEAGIRAGLVEEFMIIDENPGDETLILSLQAIQQDLAWER 150
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA VEGL+GFVPFSQ+SSKSTAEELL K+LPLKFVEV
Sbjct: 151 CRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEV 210
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDR
Sbjct: 211 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDR 270
Query: 301 VADIATVLQPGDTLKVCL 318
VADI+TVLQPGDTLKV +
Sbjct: 271 VADISTVLQPGDTLKVMI 288
>gi|116790591|gb|ABK25672.1| unknown [Picea sitchensis]
Length = 425
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/330 (59%), Positives = 245/330 (74%), Gaps = 12/330 (3%)
Query: 1 MATLAQQ-------FTGLRCPPISHTRLSRRKS--ITQIQQKLLNSRKNKT--IVSAVAI 49
MA + QQ FT R + +R S+ +S ++ Q + N +KNK +V AV I
Sbjct: 1 MAAVTQQLALSGTFFTCSRSSKLCCSRPSQWQSQYLSLSQPRGKNQKKNKRRGVVCAVTI 60
Query: 50 SNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYD-FNSELGTKVKGTVF 108
SNA+TRERE L + EE + R PMEGV F LE+F +L D N E+G+ VKG VF
Sbjct: 61 SNAKTRERESLMEEIEERLRKIRENPMEGVPFDLEQFSESLANNDGVNCEIGSTVKGMVF 120
Query: 109 CTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLS 168
TD GA+VDI K A+LP EACI+ IK EE G+ PG++E F+++ E++ + ++LS
Sbjct: 121 KTDANGAMVDIRDKVPAFLPLVEACIYNIKTPEEIGLYPGIEEHFMVLREDDTNSRMILS 180
Query: 169 LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL 228
L+ IQ +LAWERCRQLQ+EDVVVKGKV+ ANKGG+ VE LRGFVPFSQIS+K EEL
Sbjct: 181 LQKIQCDLAWERCRQLQTEDVVVKGKVLSANKGGLNVLVECLRGFVPFSQISTKINIEEL 240
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGIN 288
+ K++PLKF+EVDEEQ+RLVLSNRKAMADSQAQLGIGSVV+GTVQ++KPYGAF+D+GGIN
Sbjct: 241 VNKEIPLKFMEVDEEQTRLVLSNRKAMADSQAQLGIGSVVLGTVQTIKPYGAFVDLGGIN 300
Query: 289 GLLHVSQISHDRVADIATVLQPGDTLKVCL 318
GLLHVSQISHDRVAD+ T+LQPGDTLKV +
Sbjct: 301 GLLHVSQISHDRVADVGTILQPGDTLKVMI 330
>gi|108707823|gb|ABF95618.1| 30S ribosomal protein S1, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
Length = 380
Score = 369 bits (947), Expect = e-99, Method: Compositional matrix adjust.
Identities = 191/318 (60%), Positives = 230/318 (72%), Gaps = 32/318 (10%)
Query: 1 MATLAQQFTGLRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREEL 60
MA+LAQ GL PP+S R + T R + + A++ E RERE +
Sbjct: 1 MASLAQHVAGLASPPLSGAPRRRPAAPT---------RPSALVCGTYALTK-EERERERM 50
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
QLF+EA ERCRTAPMEGVSF+ E+ SA+E D ++++G+ +KGTVF T + GA VDI
Sbjct: 51 CQLFDEASERCRTAPMEGVSFSPEDLDSAVESTDIDTDIGSLIKGTVFMTTSNGAYVDIQ 110
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
+KS+A+LP EAC+ + H+EEAGI GL EEF+II EN D++L+LSL+ IQ +LAWER
Sbjct: 111 SKSTAFLPLDEACLLDVNHIEEAGIRAGLVEEFMIIDENPGDETLILSLQAIQQDLAWER 170
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEV 240
CRQLQ+EDVVV GKV+G NKGGVVA VEGL+GFVPFSQ+SSKSTAEELL K+LPLKFVEV
Sbjct: 171 CRQLQAEDVVVTGKVIGGNKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEV 230
Query: 241 DEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
DEEQ RLVLSNRKAMADSQAQLGIGSVV+GTV+SLKPYGAFIDI
Sbjct: 231 DEEQGRLVLSNRKAMADSQAQLGIGSVVLGTVESLKPYGAFIDI---------------- 274
Query: 301 VADIATVLQPGDTLKVCL 318
VLQPGDTLKV +
Sbjct: 275 ------VLQPGDTLKVMI 286
>gi|356519893|ref|XP_003528603.1| PREDICTED: LOW QUALITY PROTEIN: 30S ribosomal protein S1,
chloroplastic-like [Glycine max]
Length = 295
Score = 330 bits (847), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 156/198 (78%), Positives = 176/198 (88%)
Query: 101 TKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160
T++KGTVF TD GA+VDITAKSSAYLP QEACIH++KHVEEAG+V G KEEF+I+GEN
Sbjct: 6 TQIKGTVFYTDANGAVVDITAKSSAYLPLQEACIHRVKHVEEAGLVXGFKEEFLIVGENS 65
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220
DDSLVLSLR +Q++LAWERCRQLQ+EDV VKGK+VG NKGGVVAE+EGLRGFVP SQIS
Sbjct: 66 VDDSLVLSLRALQFDLAWERCRQLQAEDVTVKGKIVGVNKGGVVAELEGLRGFVPLSQIS 125
Query: 221 SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGA 280
+ S EELL K+LPLKFVEVDEEQSRLVLSNRKA+A +QAQLGIGSVV G+VQSLKPYGA
Sbjct: 126 TNSNVEELLDKELPLKFVEVDEEQSRLVLSNRKAVAGNQAQLGIGSVVTGSVQSLKPYGA 185
Query: 281 FIDIGGINGLLHVSQISH 298
FIDIGGINGLLH + H
Sbjct: 186 FIDIGGINGLLHAXTLGH 203
>gi|168014820|ref|XP_001759949.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162688699|gb|EDQ75074.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 389
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 158/267 (59%), Positives = 205/267 (76%), Gaps = 3/267 (1%)
Query: 55 REREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG 114
+ R+ L + E +E +P+ GV FT EEF L KYDF+ E+G VKG VF +D G
Sbjct: 57 KSRQGLLEEVERRWEAALESPLAGVEFTHEEFAEVLSKYDFSFEIGDMVKGVVFKSDYNG 116
Query: 115 ALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174
AL+DI AK+ AYLP EACIHK++ VEE G+ PG +EEFVI+ +++ + ++LSLR IQ+
Sbjct: 117 ALIDIGAKAPAYLPMAEACIHKLRSVEEVGLYPGTEEEFVIVKDDDDNGRMILSLRKIQH 176
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS--SKSTAEELLGKD 232
EL WERC QL ++DVVV+G ++ +N GG V VEGLRGFVPFSQIS ++S EELL K+
Sbjct: 177 ELCWERCAQLLADDVVVRGTILSSNSGGFVVAVEGLRGFVPFSQISAVTQSNPEELLNKE 236
Query: 233 LPLKFVEVDEEQSRLVLSNRKA-MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLL 291
+PLKF+EVDEE++RLVLSNRKA A+SQ+ GIGSVV+GTVQ++KPYGAFIDIGG++GLL
Sbjct: 237 IPLKFLEVDEERTRLVLSNRKATFAESQSAFGIGSVVVGTVQTVKPYGAFIDIGGVSGLL 296
Query: 292 HVSQISHDRVADIATVLQPGDTLKVCL 318
H+SQISHDR+ + TVL PGD LKV +
Sbjct: 297 HISQISHDRLTSVETVLSPGDKLKVMV 323
>gi|168011566|ref|XP_001758474.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690509|gb|EDQ76876.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 397
Score = 326 bits (835), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 157/263 (59%), Positives = 204/263 (77%), Gaps = 7/263 (2%)
Query: 63 LFEEAYERCRTA---PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L EEA +R A P+ GV FT +EF AL KYDF+ E+G VKG VF +D GAL+DI
Sbjct: 57 LLEEAEKRWEAALESPLAGVQFTNDEFADALSKYDFSFEIGDMVKGVVFKSDYNGALIDI 116
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
AK+ AYLP EACIHK++ VEE G+ PG +EEFV+I +++ + ++LSLR IQY+L WE
Sbjct: 117 GAKAPAYLPMGEACIHKLRSVEEVGLYPGTEEEFVVIKDDDDNGRMILSLRKIQYDLCWE 176
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK---STAEELLGKDLPLK 236
RC Q+ ++DVVV+G ++ N GG V +VEGLRGFVPFSQ+S++ S EELL K++PLK
Sbjct: 177 RCAQMLADDVVVRGTILSHNSGGFVVDVEGLRGFVPFSQVSARGAQSNPEELLNKEIPLK 236
Query: 237 FVEVDEEQSRLVLSNRKA-MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQ 295
F+EVDEE++RLVLSNRKA A++Q+ GIGSVV+GTVQ++KPYGAFIDIGG++GLLH+SQ
Sbjct: 237 FLEVDEERTRLVLSNRKATFAENQSAFGIGSVVVGTVQTVKPYGAFIDIGGVSGLLHISQ 296
Query: 296 ISHDRVADIATVLQPGDTLKVCL 318
ISHDR+ + TVL PGD LKV +
Sbjct: 297 ISHDRLTTVETVLSPGDKLKVMI 319
>gi|154359354|gb|ABS79699.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359356|gb|ABS79700.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 186
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 142/164 (86%), Positives = 157/164 (95%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IIGENE+DDSL+LSLR IQYELAWERCRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFV
Sbjct: 1 IIGENESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFV 60
Query: 215 PFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQS 274
PFSQISSK+ AEELL K++PLKFVEVDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQS
Sbjct: 61 PFSQISSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQS 120
Query: 275 LKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
LKPYGAFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKV +
Sbjct: 121 LKPYGAFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI 164
>gi|302783342|ref|XP_002973444.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
gi|300159197|gb|EFJ25818.1| hypothetical protein SELMODRAFT_271018 [Selaginella moellendorffii]
Length = 434
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 140/281 (49%), Positives = 200/281 (71%), Gaps = 2/281 (0%)
Query: 39 KNKTIVSAVAISNAETRERE-ELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNS 97
KN V V ++ A+ R R ++ + E +E + P+EGV FT+EEF AL KY+F+
Sbjct: 55 KNAARVHCV-VAFADPRSRNLDIKEEIERRWEALQENPLEGVPFTVEEFEEALSKYEFDH 113
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
+G VKGTVF TD GALVDI KS A+LP A + K+K + G+ G++E+F ++
Sbjct: 114 SVGDVVKGTVFVTDKLGALVDIGGKSMAFLPMDLASVFKLKDLRVMGLFSGVQEQFEVVR 173
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
E+E + ++SLR + +L+WER +Q+Q+ED + KG VV +N+GG+ ++E L+ F+PFS
Sbjct: 174 EDEENSRFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFS 233
Query: 218 QISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKP 277
Q++ E L G++LP+K +EVDEEQ RLV+S+RKA+A++QA LGIGSVV+GTVQ++KP
Sbjct: 234 QLAGGLNQENLTGRELPVKVLEVDEEQKRLVVSHRKALAENQATLGIGSVVVGTVQTIKP 293
Query: 278 YGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
YGAFID+GG+ GLLHVSQISHDR+ + VL PGD LKV +
Sbjct: 294 YGAFIDLGGLTGLLHVSQISHDRITTVENVLSPGDKLKVMV 334
>gi|302823925|ref|XP_002993610.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
gi|300138538|gb|EFJ05302.1| hypothetical protein SELMODRAFT_163123 [Selaginella moellendorffii]
Length = 438
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 140/281 (49%), Positives = 200/281 (71%), Gaps = 2/281 (0%)
Query: 39 KNKTIVSAVAISNAETRERE-ELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNS 97
KN V V ++ A+ R R ++ + E +E + P+EGV FT+EEF AL KY+F+
Sbjct: 59 KNAARVHCV-VAFADPRSRNLDIKEEIERRWEALQENPLEGVPFTVEEFEEALSKYEFDH 117
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
+G VKGTVF TD GALVDI KS A+LP A + K+K + G+ G++E+F ++
Sbjct: 118 TVGDVVKGTVFVTDKLGALVDIGGKSMAFLPMDLASVFKLKDLRVMGLFSGVQEQFEVVR 177
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
E+E + ++SLR + +L+WER +Q+Q+ED + KG VV +N+GG+ ++E L+ F+PFS
Sbjct: 178 EDEENSRFIVSLREMHIKLSWERLKQIQAEDAICKGVVVSSNRGGLSLQIECLKAFLPFS 237
Query: 218 QISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKP 277
Q++ E L G++LP+K +EVDEEQ RLV+S+RKA+A++QA LGIGSVV+GTVQ++KP
Sbjct: 238 QLAGGLNQENLTGRELPVKVLEVDEEQKRLVVSHRKALAENQATLGIGSVVVGTVQTIKP 297
Query: 278 YGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
YGAFID+GG+ GLLHVSQISHDR+ + VL PGD LKV +
Sbjct: 298 YGAFIDLGGLTGLLHVSQISHDRITTVENVLSPGDKLKVMV 338
>gi|154359360|gb|ABS79702.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 176
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 152/159 (95%)
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E+DDSL+LSLR IQYELAWERCRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQI
Sbjct: 1 ESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQI 60
Query: 220 SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYG 279
SSK+ AEELL K++PLKFVEVDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYG
Sbjct: 61 SSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYG 120
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
AFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKV +
Sbjct: 121 AFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI 159
>gi|154359306|gb|ABS79675.1| At5g30510-like protein [Arabidopsis halleri subsp. halleri]
Length = 175
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 137/159 (86%), Positives = 152/159 (95%)
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E+DDSL+LSLR IQYELAWERCRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQI
Sbjct: 1 ESDDSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQI 60
Query: 220 SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYG 279
SSK+ AEELL K++PLKFVEVDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYG
Sbjct: 61 SSKAAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYG 120
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
AFIDIGGINGLLHVSQISHDRV+DIATVLQPGDTLKV +
Sbjct: 121 AFIDIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI 159
>gi|154359308|gb|ABS79676.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359310|gb|ABS79677.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359312|gb|ABS79678.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359314|gb|ABS79679.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359316|gb|ABS79680.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359318|gb|ABS79681.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359320|gb|ABS79682.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359322|gb|ABS79683.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359324|gb|ABS79684.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359326|gb|ABS79685.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359328|gb|ABS79686.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359330|gb|ABS79687.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359332|gb|ABS79688.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359334|gb|ABS79689.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359336|gb|ABS79690.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359338|gb|ABS79691.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359340|gb|ABS79692.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359342|gb|ABS79693.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359344|gb|ABS79694.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359346|gb|ABS79695.1| At5g30510-like protein [Arabidopsis lyrata subsp. lyrata]
gi|154359348|gb|ABS79696.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359350|gb|ABS79697.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359352|gb|ABS79698.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359358|gb|ABS79701.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359362|gb|ABS79703.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359364|gb|ABS79704.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359366|gb|ABS79705.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359368|gb|ABS79706.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359370|gb|ABS79707.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
gi|154359372|gb|ABS79708.1| At5g30510-like protein [Arabidopsis lyrata subsp. petraea]
Length = 171
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 135/156 (86%), Positives = 149/156 (95%)
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
DSL+LSLR IQYELAWERCRQLQ+EDV+VK KV+GANKGG+VA VEGLRGFVPFSQISSK
Sbjct: 1 DSLLLSLRNIQYELAWERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSK 60
Query: 223 STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFI 282
+ AEELL K++PLKFVEVDEEQ++LVLSNRKA+ADSQAQLGIGSVV+G VQSLKPYGAFI
Sbjct: 61 AAAEELLEKEIPLKFVEVDEEQTKLVLSNRKAVADSQAQLGIGSVVLGVVQSLKPYGAFI 120
Query: 283 DIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
DIGGINGLLHVSQISHDRV+DIATVLQPGDTLKV +
Sbjct: 121 DIGGINGLLHVSQISHDRVSDIATVLQPGDTLKVMI 156
>gi|217072824|gb|ACJ84772.1| unknown [Medicago truncatula]
Length = 186
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 130/184 (70%), Positives = 161/184 (87%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
MEGVSFTL++F LEKYD+ SE+GTKVKGTVF T+ GA VDIT+KS+AYLP EA ++
Sbjct: 1 MEGVSFTLDQFTETLEKYDYESEIGTKVKGTVFGTETSGAFVDITSKSTAYLPLYEASLY 60
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
K++HVEEAGI PG+KEEFVI+G+NE DD ++LSLR IQ+ELAWERCRQLQ+ED VVKGK+
Sbjct: 61 KLRHVEEAGIFPGVKEEFVIVGQNEIDDGMILSLRDIQFELAWERCRQLQAEDAVVKGKI 120
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
+ ANKGGVVAEVEGL+GFVPFSQ+S+KS EE++ ++PLKFVEVD+EQ+RLVLS+RKA+
Sbjct: 121 IDANKGGVVAEVEGLKGFVPFSQMSTKSPGEEIIEFEVPLKFVEVDQEQARLVLSHRKAV 180
Query: 256 ADSQ 259
A Q
Sbjct: 181 AGIQ 184
>gi|317968718|ref|ZP_07970108.1| 30S ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 354
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 123/250 (49%), Positives = 178/250 (71%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R ++GV FTL+EF S L KYD+N + G VKGTVF + +G+++DI AK++A++P
Sbjct: 48 RAVARDLDGVGFTLDEFASLLSKYDYNFKPGDVVKGTVFAIEPKGSMIDIGAKTAAFMPM 107
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++H+ + + PG + EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 108 QEVSINRVEHISDV-LEPGEEREFFILSEENEDGQLTLSIRRIEYQRAWERVRQLQKEDA 166
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ + LPLKF+EVDEE++RLVL
Sbjct: 167 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVAEFLPLKFLEVDEERNRLVL 226
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL
Sbjct: 227 SHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVL 286
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 287 NVNDQMKVMI 296
>gi|318042629|ref|ZP_07974585.1| 30S ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 355
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 121/244 (49%), Positives = 175/244 (71%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
++GV FTL+EF S L KYD+N + G VKGTVF + +G+++DI AK++A++P QE I+
Sbjct: 52 LDGVGFTLDEFASLLSKYDYNFKPGDVVKGTVFAIEPKGSMIDIGAKTAAFMPMQEVSIN 111
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + PG + EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 112 RVESISDV-LEPGEEREFFILSEENEDGQLTLSIRRIEYQRAWERVRQLQKEDATIYSEV 170
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 171 FATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVLSHRRAL 230
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL D +
Sbjct: 231 VERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVLNVNDQM 290
Query: 315 KVCL 318
KV +
Sbjct: 291 KVMI 294
>gi|427702896|ref|YP_007046118.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427346064|gb|AFY28777.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 358
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/243 (49%), Positives = 174/243 (71%), Gaps = 2/243 (0%)
Query: 77 EGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
+GV FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P QE I++
Sbjct: 56 DGVGFTLDEFAALLSKYDYNFKPGDVVNGTVFALESKGAMIDIGAKTAAFMPLQEVSINR 115
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
++H+ + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 116 VEHLSDV-LEPGEVREFFILSEENEDGQLTLSVRRIEYQRAWERVRQLQKEDATIYSEVF 174
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 175 ATNRGGALVRVEGLRGFIPGSHISTRKAKEELVADFLPLKFLEVDEERNRLVLSHRRALV 234
Query: 257 DSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL D +K
Sbjct: 235 ERKMNRLEVGEVVLGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVLNVNDQMK 294
Query: 316 VCL 318
V +
Sbjct: 295 VMI 297
>gi|254432396|ref|ZP_05046099.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
gi|197626849|gb|EDY39408.1| ribosomal protein S1 [Cyanobium sp. PCC 7001]
Length = 351
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 176/250 (70%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R T ++GV FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 42 RAATRDLDGVGFTLDEFAALLSKYDYNFKPGDVVNGTVFALESKGAMIDIGAKTAAFMPL 101
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 102 QEVSINRVEGLSDV-LEPGEIREFFILSEENEDGQLTLSIRRIEYQRAWERVRQLQKEDA 160
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 161 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVADFLPLKFLEVDEERNRLVL 220
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL
Sbjct: 221 SHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVL 280
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 281 NVNDQMKVMI 290
>gi|113478043|ref|YP_724104.1| 30S ribosomal protein S1 [Trichodesmium erythraeum IMS101]
gi|110169091|gb|ABG53631.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 390
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/245 (49%), Positives = 176/245 (71%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I
Sbjct: 7 PAKEVGFTHEDFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+++++ EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +
Sbjct: 67 NRVENPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQ 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+LL ++LPLKF+EVDEE++RLVLS+R+A
Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHISTRKPKEDLLNEELPLKFLEVDEERNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISHD + ++VL+ D
Sbjct: 186 LVERKMNRLEVGEVVIGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPSSVLKVNDE 245
Query: 314 LKVCL 318
LKV +
Sbjct: 246 LKVMI 250
>gi|359459159|ref|ZP_09247722.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 325
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/248 (49%), Positives = 176/248 (70%), Gaps = 2/248 (0%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R + + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE
Sbjct: 4 RETTLPDIGFTHEDFAALLDKYDYHFNPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQE 63
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
I++I++ +E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V
Sbjct: 64 MSINRIENPDEVLQSNETREFFILADENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATV 122
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ V N+GG + +EGLRGF+P S IS+++T E+L+G++LPLKF+EVDEE++RLVLS+
Sbjct: 123 RSSVFATNRGGALVRIEGLRGFIPGSHISTRATKEDLIGEELPLKFLEVDEERNRLVLSH 182
Query: 252 RKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V
Sbjct: 183 RRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNV 242
Query: 311 GDTLKVCL 318
D LKV +
Sbjct: 243 NDDLKVMI 250
>gi|158337672|ref|YP_001518848.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158307913|gb|ABW29530.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 325
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 122/248 (49%), Positives = 176/248 (70%), Gaps = 2/248 (0%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R + + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE
Sbjct: 4 RETTLPDIGFTHEDFAALLDKYDYHFNPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQE 63
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
I++I++ +E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V
Sbjct: 64 MSINRIENPDEVLQSNETREFFILADENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATV 122
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ V N+GG + +EGLRGF+P S IS+++T E+L+G++LPLKF+EVDEE++RLVLS+
Sbjct: 123 RSSVFATNRGGALVRIEGLRGFIPGSHISTRATKEDLIGEELPLKFLEVDEERNRLVLSH 182
Query: 252 RKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V
Sbjct: 183 RRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNV 242
Query: 311 GDTLKVCL 318
D LKV +
Sbjct: 243 NDDLKVMI 250
>gi|411117376|ref|ZP_11389863.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713479|gb|EKQ70980.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 331
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 123/241 (51%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT EEF + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++I
Sbjct: 11 VGFTYEEFAARLDKYDYHFSPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRID 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPDEVLQADETREFFILADENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|87300975|ref|ZP_01083817.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
gi|87284846|gb|EAQ76798.1| 30S ribosomal protein S1 [Synechococcus sp. WH 5701]
Length = 361
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 121/250 (48%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + +G FTLEEF S L KYD+N + G V GTVF + +GA++DI AK++A++P
Sbjct: 52 RAVSRDTDGAGFTLEEFASLLSKYDYNFKPGDVVNGTVFAMEPKGAMIDIGAKTAAFMPL 111
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 112 QEVSINRVEALSDV-LQPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 170
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ E+L+ LPLKF+EVDEE++RLVL
Sbjct: 171 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEDLVADFLPLKFLEVDEERNRLVL 230
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL
Sbjct: 231 SHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVL 290
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 291 NVNDQMKVMI 300
>gi|194477089|ref|YP_002049268.1| 30S ribosomal protein S1 [Paulinella chromatophora]
gi|171192096|gb|ACB43058.1| 30S ribosomal protein S1 [Paulinella chromatophora]
Length = 330
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 172/244 (70%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+EG F+L+EF S L KYD+N + G V GTVF +++GA++DI AK++A++P E I+
Sbjct: 25 LEGAGFSLDEFASLLSKYDYNFKPGDVVNGTVFALESKGAMIDIGAKTAAFMPMPEVSIN 84
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 85 RVEGLSDV-LEPGEVREFFILSEENEDGQLTLSIRRIEYQRAWERVRQLQKEDATIYSEV 143
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 144 FATNRGGALVRVEGLRGFIPGSHISTRKAKEELVSDFLPLKFLEVDEERNRLVLSHRRAL 203
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TVL D +
Sbjct: 204 VERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVLNVNDQM 263
Query: 315 KVCL 318
KV +
Sbjct: 264 KVMI 267
>gi|124023909|ref|YP_001018216.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123964195|gb|ABM78951.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9303]
Length = 367
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + G FTL+EF S L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 57 RAAKNDLSGAGFTLDEFASLLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + ++PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LLPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|16330162|ref|NP_440890.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383321905|ref|YP_005382758.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325074|ref|YP_005385927.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383490958|ref|YP_005408634.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436225|ref|YP_005650949.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814321|ref|YP_007450773.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500385|sp|P73530.1|RS1A_SYNY3 RecName: Full=30S ribosomal protein S1 homolog A
gi|1652650|dbj|BAA17570.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273257|dbj|BAK49744.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271224|dbj|BAL28743.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359274394|dbj|BAL31912.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359277564|dbj|BAL35081.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407958070|dbj|BAM51310.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451780290|gb|AGF51259.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 328
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++
Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 70 DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 188
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 189 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 248
Query: 318 L 318
+
Sbjct: 249 I 249
>gi|148241514|ref|YP_001226671.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147849824|emb|CAK27318.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 367
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 121/251 (48%), Positives = 176/251 (70%), Gaps = 2/251 (0%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
+R +A E V FTLE+F S L KYD++ + G V GTVF + +GAL+DI AK++A++P
Sbjct: 58 QRTPSANNEDVGFTLEDFTSLLSKYDYHFKPGDVVNGTVFNLEPKGALIDIGAKTAAFMP 117
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 188
E I++++ +E+ + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 118 LPEVSINRVETLEDV-LEPGETREFFILSEENEDGQLSLSIRRIEYQRAWERVRQLQKED 176
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLV 248
+ +V N+GG + VEGLRGF+P S IS++ EEL+ + LPLKF+EVDEE++RLV
Sbjct: 177 ATIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVAEFLPLKFLEVDEERNRLV 236
Query: 249 LSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
LS+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V
Sbjct: 237 LSHRRALVERKMNRLEVGEVVLGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSV 296
Query: 308 LQPGDTLKVCL 318
L D +KV +
Sbjct: 297 LNVNDQMKVMI 307
>gi|33863935|ref|NP_895495.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33635519|emb|CAE21843.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus str.
MIT 9313]
Length = 367
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + G FTL+EF S L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 57 RAAKNDLSGAGFTLDEFASLLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + ++PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LLPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVIGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|87124899|ref|ZP_01080746.1| RNA binding S1 [Synechococcus sp. RS9917]
gi|86167219|gb|EAQ68479.1| RNA binding S1 [Synechococcus sp. RS9917]
Length = 369
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + ++ FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 60 RASSRDLDNAGFTLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPM 119
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 120 QEVSINRVEGLSDV-LQPGEVREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDA 178
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 179 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 238
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 239 SHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 298
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 299 NVNDQMKVMI 308
>gi|390442071|ref|ZP_10230090.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
gi|389834605|emb|CCI34216.1| 30S ribosomal protein S1 homolog A [Microcystis sp. T1-4]
Length = 358
Score = 248 bits (633), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 118/252 (46%), Positives = 171/252 (67%), Gaps = 2/252 (0%)
Query: 68 YERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
Y + + + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++
Sbjct: 28 YMTTQKTANKNIGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFI 87
Query: 128 PTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE 187
P QE I+++ + EE + P EF I+ + D L LS+R I+Y AWER RQLQ E
Sbjct: 88 PVQEMSINRVDNPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKE 146
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRL 247
D V+ V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RL
Sbjct: 147 DATVRSNVFATNRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRL 206
Query: 248 VLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
VLS+R+A+ + + L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + T
Sbjct: 207 VLSHRRALVERKMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHT 266
Query: 307 VLQPGDTLKVCL 318
V D LKV +
Sbjct: 267 VFNVNDELKVMI 278
>gi|113955395|ref|YP_729757.1| 30S ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113882746|gb|ABI47704.1| ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 305
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 118/244 (48%), Positives = 172/244 (70%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
M+G FT+++F S L KYD+N + G V GTVF + +GA++DI AK++A++P QE I+
Sbjct: 1 MDGAGFTIDDFASLLSKYDYNFKPGDIVNGTVFALETKGAMIDIGAKTAAFMPLQEVSIN 60
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 61 RVEGLSDV-LQPGEIREFFIMSEENEDGQLSLSVRRIEYQRAWERVRQLQKEDATIYSEV 119
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 120 FATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVLSHRRAL 179
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL D +
Sbjct: 180 VERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVLNVNDQM 239
Query: 315 KVCL 318
KV +
Sbjct: 240 KVMI 243
>gi|425438866|ref|ZP_18819204.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|425445803|ref|ZP_18825823.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|425454554|ref|ZP_18834284.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
gi|389716744|emb|CCH99046.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9717]
gi|389734101|emb|CCI02187.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9443]
gi|389804745|emb|CCI16018.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9807]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 NPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + TV D LKV
Sbjct: 190 KMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHTVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|428212888|ref|YP_007086032.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001269|gb|AFY82112.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 425
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 APDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|422301965|ref|ZP_16389329.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
gi|389788948|emb|CCI15121.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9806]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 NPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + TV D LKV
Sbjct: 190 KMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHTVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|166367132|ref|YP_001659405.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|425437110|ref|ZP_18817537.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|425449492|ref|ZP_18829331.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|425471179|ref|ZP_18850039.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440754860|ref|ZP_20934062.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
gi|166089505|dbj|BAG04213.1| 30S ribosomal protein S1 [Microcystis aeruginosa NIES-843]
gi|389677991|emb|CCH93122.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9432]
gi|389763766|emb|CCI09762.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
7941]
gi|389882968|emb|CCI36602.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9701]
gi|440175066|gb|ELP54435.1| 30S ribosomal protein S1 [Microcystis aeruginosa TAIHU98]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 NPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + TV D LKV
Sbjct: 190 KMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHTVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|425463814|ref|ZP_18843144.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
gi|389829070|emb|CCI29843.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9809]
Length = 330
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 NPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + TV D LKV
Sbjct: 190 KMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHTVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|425459139|ref|ZP_18838625.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443654187|ref|ZP_21131250.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
gi|159028923|emb|CAO87384.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|389823195|emb|CCI28787.1| 30S ribosomal protein S1 homolog A [Microcystis aeruginosa PCC
9808]
gi|443333859|gb|ELS48397.1| 30S ribosomal protein S1 [Microcystis aeruginosa DIANCHI905]
Length = 330
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A++P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAFIPVQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 NPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQKEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + TV D LKV
Sbjct: 190 KMNGLAVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHTVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|352096607|ref|ZP_08957434.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351676257|gb|EHA59411.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 366
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R ++G FT+++F S L KYD+N + G V GTVF + +GA++DI AK++A++P
Sbjct: 56 RANPKDLDGAGFTIDDFASLLSKYDYNFKPGDIVNGTVFALETKGAMIDIGAKTAAFMPL 115
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 116 QEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLSLSVRRIEYQRAWERVRQLQKEDA 174
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 175 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVAGFLPLKFLEVDEERNRLVL 234
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 235 SHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 294
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 295 NVNDQMKVMI 304
>gi|428770655|ref|YP_007162445.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684934|gb|AFZ54401.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 346
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 122/241 (50%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
VSFT EEF + L++YD++ G V GTVF + +GAL+DI AK++AY+P QE I+++
Sbjct: 12 VSFTHEEFAALLDQYDYHFSPGDVVPGTVFSIEPKGALIDIGAKTAAYIPVQELSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E +E F++ ENE D L LS+R I+Y AW+R RQLQ ED V V
Sbjct: 72 DPSEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWQRVRQLQEEDATVYSNVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + VEGLRGF+P S IS+K T E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRVEGLRGFIPGSHISAKDTKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|116075859|ref|ZP_01473118.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
gi|116067174|gb|EAU72929.1| 30S ribosomal protein S1 [Synechococcus sp. RS9916]
Length = 359
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R +E F+L+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 50 RANPRDLESAGFSLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPM 109
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 110 QEVSINRVEGLGDV-LQPGEVREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDA 168
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 169 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 228
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 229 SHRRALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 288
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 289 NVNDQMKVMI 298
>gi|428298667|ref|YP_007136973.1| 30S ribosomal protein S1P [Calothrix sp. PCC 6303]
gi|428235211|gb|AFZ01001.1| SSU ribosomal protein S1P [Calothrix sp. PCC 6303]
Length = 356
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 191 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|291572098|dbj|BAI94370.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
Length = 398
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|218247838|ref|YP_002373209.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8801]
gi|257060841|ref|YP_003138729.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 8802]
gi|218168316|gb|ACK67053.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256591007|gb|ACV01894.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 331
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFAALLDKYDYHFNPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 NPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDALKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|428772044|ref|YP_007163832.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428686323|gb|AFZ46183.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 352
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L++YD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFAALLDQYDYHFSPGDVVPGTVFSMEQRGALIDIGAKTAAYIPVQELSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E + P EF I+ + D L LS+R I+Y AWER RQLQ ED V V
Sbjct: 72 NPDEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQQEDATVYSNVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + VEGLRGF+P S IS+K E+LLG+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRVEGLRGFIPGSHISAKDAKEDLLGQDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|440684481|ref|YP_007159276.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
gi|428681600|gb|AFZ60366.1| SSU ribosomal protein S1P [Anabaena cylindrica PCC 7122]
Length = 359
Score = 246 bits (628), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 122/247 (49%), Positives = 173/247 (70%), Gaps = 4/247 (1%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
TAP + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE
Sbjct: 7 TAPE--IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEM 64
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
I+++ EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+
Sbjct: 65 SINRVDSPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVR 123
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
V N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R
Sbjct: 124 SGVFATNRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHR 183
Query: 253 KAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+A+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V
Sbjct: 184 RALVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVN 243
Query: 312 DTLKVCL 318
D +KV +
Sbjct: 244 DEVKVMI 250
>gi|376006629|ref|ZP_09783861.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375324995|emb|CCE19614.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 375
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|423063754|ref|ZP_17052544.1| RNA binding S1 domain protein [Arthrospira platensis C1]
gi|406714603|gb|EKD09764.1| RNA binding S1 domain protein [Arthrospira platensis C1]
Length = 384
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|427418503|ref|ZP_18908686.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425761216|gb|EKV02069.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 340
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L++YD++ G V GTVF + RGAL+DI AK++AYLP QE I++++
Sbjct: 11 IGFTHEDFEALLDQYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYLPIQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 AADEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQNEDATVRSDVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+ LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEALPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG V+ LKPYGAFIDIGG++GLLH+S+ISHD + TVL D +KV
Sbjct: 190 KMNGLQVGEVVIGAVRGLKPYGAFIDIGGVSGLLHISEISHDHIDTPNTVLNVNDEIKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|209523929|ref|ZP_03272481.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|209495601|gb|EDZ95904.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
Length = 375
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|434392818|ref|YP_007127765.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
gi|428264659|gb|AFZ30605.1| SSU ribosomal protein S1P [Gloeocapsa sp. PCC 7428]
Length = 330
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDTVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|33860870|ref|NP_892431.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33633812|emb|CAE18771.1| 30S ribosomal protein S1, homolog A [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 171/248 (68%), Gaps = 2/248 (0%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R ++ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE
Sbjct: 53 RNNDLDTAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPMQE 112
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
I++++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED +
Sbjct: 113 VSINRVEGLSDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATI 171
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+V N+GG + VEGLRGF+P S IS++ E+L G+ LPLKF+EVDEE++RLVLS+
Sbjct: 172 YSEVFATNRGGALVRVEGLRGFIPGSHISARKIKEDLEGEYLPLKFLEVDEERNRLVLSH 231
Query: 252 RKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+A+ + + +L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL
Sbjct: 232 RRALVEKKMNRLEVGEVVIGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNV 291
Query: 311 GDTLKVCL 318
D +KV +
Sbjct: 292 NDQMKVMI 299
>gi|434404514|ref|YP_007147399.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428258769|gb|AFZ24719.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 378
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|409990465|ref|ZP_11273835.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
gi|409938680|gb|EKN79974.1| 30S ribosomal protein S1, partial [Arthrospira platensis str.
Paraca]
Length = 320
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDVVPGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|443311823|ref|ZP_21041447.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
gi|442778223|gb|ELR88492.1| ribosomal protein S1, partial [Synechocystis sp. PCC 7509]
Length = 331
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHDDFAALLDKYDYHFSPGDVVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+LLG++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLLGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|300865634|ref|ZP_07110407.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300336361|emb|CBN55557.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 369
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDKYDYHFSPGDIVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|434389320|ref|YP_007099931.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428020310|gb|AFY96404.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 339
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FTL++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTLDDFAALLDKYDYHFSPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 QPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKAKEELVNEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|443315844|ref|ZP_21045315.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442784569|gb|ELR94438.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 330
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 13 IGFTHEDFAALLDKYDYHFNPGDTVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVE 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 73 SPDEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQKEDATVRSGVFAT 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 132 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 191
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV+G V+ LKPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 192 KMNGLQVGEVVLGNVRGLKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|119509035|ref|ZP_01628186.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119466201|gb|EAW47087.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 383
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|186682777|ref|YP_001865973.1| 30S ribosomal protein S1 [Nostoc punctiforme PCC 73102]
gi|186465229|gb|ACC81030.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 375
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|307151161|ref|YP_003886545.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306981389|gb|ADN13270.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 328
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F L++YD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFEKLLDQYDYHFSPGDIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 DPSEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|298492501|ref|YP_003722678.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298234419|gb|ADI65555.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 341
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|220909392|ref|YP_002484703.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7425]
gi|219866003|gb|ACL46342.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 321
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + +GAL+DI AK++A++P QE I++I
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPKGALIDIGAKTAAFIPIQEMSINRID 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLRSNETREFFILADENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSAVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ T E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRVTKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNKLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|427710313|ref|YP_007052690.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427362818|gb|AFY45540.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 358
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|334121254|ref|ZP_08495327.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333455342|gb|EGK83994.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 371
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|428316075|ref|YP_007113957.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
gi|428239755|gb|AFZ05541.1| SSU ribosomal protein S1P [Oscillatoria nigro-viridis PCC 7112]
Length = 364
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVAEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|17227632|ref|NP_484180.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17135114|dbj|BAB77660.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 343
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|354555643|ref|ZP_08974943.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|353552293|gb|EHC21689.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 336
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 DPDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|284928895|ref|YP_003421417.1| 30S ribosomal protein S1P [cyanobacterium UCYN-A]
gi|284809354|gb|ADB95059.1| SSU ribosomal protein S1P [cyanobacterium UCYN-A]
Length = 346
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/246 (47%), Positives = 171/246 (69%), Gaps = 2/246 (0%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
A ++ + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE
Sbjct: 6 ATIKDIGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMS 65
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I+++ + +E + P EF I+ + D L LS+R I+Y AWER RQL+ ED V+
Sbjct: 66 INRVDNPDEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLREEDATVRS 124
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+
Sbjct: 125 NVFATNRGGALVRIEGLRGFIPGSHISTREAKEDLVGEELPLKFLEVDEERNRLVLSHRR 184
Query: 254 AMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
A+ + + L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D
Sbjct: 185 ALVERKMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVND 244
Query: 313 TLKVCL 318
LKV +
Sbjct: 245 ELKVMI 250
>gi|172035135|ref|YP_001801636.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|171696589|gb|ACB49570.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
Length = 359
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 34 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 93
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 94 DPDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 152
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 153 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 212
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 213 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVNDELKVM 272
Query: 318 L 318
+
Sbjct: 273 I 273
>gi|427717194|ref|YP_007065188.1| 30S ribosomal protein S1P [Calothrix sp. PCC 7507]
gi|427349630|gb|AFY32354.1| SSU ribosomal protein S1P [Calothrix sp. PCC 7507]
Length = 361
Score = 244 bits (623), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|218440421|ref|YP_002378750.1| 30S ribosomal protein S1 [Cyanothece sp. PCC 7424]
gi|218173149|gb|ACK71882.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 328
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F L++YD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFEKLLDQYDYHFSPGDIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 DPSEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSSVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGQDLPLKFLEVDEDRNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|75907727|ref|YP_322023.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75701452|gb|ABA21128.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 343
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|443327874|ref|ZP_21056481.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442792485|gb|ELS01965.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 364
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFAALLDKYDYHFSPGDVVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E +E F++ ENE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 72 DPVEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|427732442|ref|YP_007078679.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427368361|gb|AFY51082.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 344
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/241 (49%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|126659306|ref|ZP_01730442.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126619388|gb|EAZ90121.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 365
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 40 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 99
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 100 DPDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 158
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 159 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 218
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 219 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVNDELKVM 278
Query: 318 L 318
+
Sbjct: 279 I 279
>gi|428210328|ref|YP_007094681.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428012249|gb|AFY90812.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 356
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVAGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQNEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVSEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|67923044|ref|ZP_00516537.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855123|gb|EAM50389.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 345
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 DPDEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+ LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|414079272|ref|YP_007000696.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413972551|gb|AFW96639.1| 30S ribosomal protein S1 [Anabaena sp. 90]
Length = 355
Score = 243 bits (621), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDVVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|416402894|ref|ZP_11687458.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
gi|357261819|gb|EHJ11043.1| SSU ribosomal protein S1p, partial [Crocosphaera watsonii WH 0003]
Length = 358
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 24 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 83
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 84 DPDEVLQANETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSDVFAT 142
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+ LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 143 NRGGALVRIEGLRGFIPGSHISTREAKEDLVGEQLPLKFLEVDEERNRLVLSHRRALVER 202
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 203 KMNGLEVGQVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFGVNDELKVM 262
Query: 318 L 318
+
Sbjct: 263 I 263
>gi|428224572|ref|YP_007108669.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427984473|gb|AFY65617.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 323
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 APDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQQEDATVRSSVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|427711825|ref|YP_007060449.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 6312]
gi|427375954|gb|AFY59906.1| ribosomal protein S1 [Synechococcus sp. PCC 6312]
Length = 339
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 172/241 (71%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT +F + L+KYD++ G V GTVF + +GAL+DI AK++AY+P QE I++I
Sbjct: 10 IGFTHADFAALLDKYDYHFNPGDVVAGTVFSIEPKGALIDIGAKTAAYIPIQEMSINRID 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E ++E F++ ENE + L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 70 NPDEVLQSNEVREFFILADENE-EGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISTRVNKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 188
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 189 KMNKLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDQLKVM 248
Query: 318 L 318
+
Sbjct: 249 I 249
>gi|428776647|ref|YP_007168434.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428690926|gb|AFZ44220.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 394
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L++YD++ G V G VF + RGAL+DI AK++AY+P QE I++++
Sbjct: 12 IGFTHEDFAALLDEYDYHFNPGDIVPGVVFSVEPRGALIDIGAKTAAYIPIQEMSINRVE 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 EPDEV-LQPEETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+ +DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTRQPKEDLVAQDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ + L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + ++V D LKV
Sbjct: 191 KMSGLKVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPSSVFDINDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|427737703|ref|YP_007057247.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427372744|gb|AFY56700.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 442
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/245 (47%), Positives = 170/245 (69%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I
Sbjct: 8 PTNDIGFTHDDFAALLDKYDYHFSPGDIVPGTVFSLEPRGALIDIGAKTAAYIPIQEMSI 67
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+++ + EE + EF I+ + + L LS+R I+Y AWER RQLQ+ED V+
Sbjct: 68 NRVDNPEEV-LQSNETREFYILSDENEEGQLTLSIRRIEYMRAWERVRQLQTEDATVRSG 126
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A
Sbjct: 127 VFATNRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEERNRLVLSHRRA 186
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D
Sbjct: 187 LVERKMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDE 246
Query: 314 LKVCL 318
LKV +
Sbjct: 247 LKVMI 251
>gi|443322096|ref|ZP_21051130.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
gi|442788220|gb|ELR97919.1| ribosomal protein S1, partial [Gloeocapsa sp. PCC 73106]
Length = 344
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
++FT E+F + L+KYD++ G V GTVF + +GAL+DI AK++A++P QE I+++
Sbjct: 12 INFTHEDFAALLDKYDYHFSPGDIVPGTVFTMEQKGALIDIGAKTAAFIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E +E F++ ENE D L LSLR I+Y AWER RQLQ+ED V+ V
Sbjct: 72 DPLEVLQAEETREFFILSDENE-DGQLTLSLRRIEYMRAWERVRQLQTEDATVRSLVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTRQAKEDLVGQELPLKFLEVDEERNRLVLSHRRALVEK 190
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + TV D LKV
Sbjct: 191 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHTVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|434400436|ref|YP_007134440.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428271533|gb|AFZ37474.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 332
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 165/241 (68%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L++YD++ G V GTVF + +GAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEDFAALLDRYDYHFSPGDVVPGTVFSVEPKGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + P EF I+ + D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 72 DPAEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQQEDATVRSNVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS+K E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISAKEAKEDLVGQDLPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 191 KMNGLEVGQVVRGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|119492683|ref|ZP_01623862.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
gi|119453021|gb|EAW34192.1| 30S ribosomal protein S1 [Lyngbya sp. PCC 8106]
Length = 414
Score = 242 bits (618), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L++YD++ G V GTVF + RGAL+DI AK++AY+P QE I++++
Sbjct: 11 VGFTHEDFAALLDQYDYHFSPGDVVAGTVFSLEPRGALIDIGAKTAAYIPLQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 71 SPDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVSEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|332706127|ref|ZP_08426198.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332355105|gb|EGJ34574.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 392
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 171/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 NPDEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS+++ E+L+ ++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRAAKEDLVAQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNRLEVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|428780280|ref|YP_007172066.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428694559|gb|AFZ50709.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 398
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 119/243 (48%), Positives = 169/243 (69%), Gaps = 6/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L++YD++ G V G VF + RGAL+DI AK++AY+P QE I++
Sbjct: 12 IGFTHEDFAALLDEYDYHFNPGDIVPGIVFSVEPRGALIDIGAKTAAYIPIQEMSINR-- 69
Query: 139 HVEEAGIV--PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
VEE G V P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 70 -VEEPGEVLQPEETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVF 128
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
N+GG + +EGLRGF+P S IS++ E+L+ +DLPLKF+EVDEE++RLVLS+R+A+
Sbjct: 129 ATNRGGALVRIEGLRGFIPGSHISTRQPKEDLVAQDLPLKFLEVDEERNRLVLSHRRALV 188
Query: 257 DSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ + + L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + ++V D LK
Sbjct: 189 ERKMSGLKVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPSSVFDINDELK 248
Query: 316 VCL 318
V +
Sbjct: 249 VMI 251
>gi|428201607|ref|YP_007080196.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427979039|gb|AFY76639.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 326
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 170/248 (68%), Gaps = 3/248 (1%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
+TA E + FT E+F + L+KYD++ G V GTVF + +GAL+DI AK++A++P QE
Sbjct: 6 KTATKE-IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPKGALIDIGAKTAAFIPIQE 64
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
I+++ E + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V
Sbjct: 65 MSINRVDDPVEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATV 123
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+
Sbjct: 124 RANVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGQELPLKFLEVDEERNRLVLSH 183
Query: 252 RKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+A+ + + L +G VV GTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V
Sbjct: 184 RRALVERKMHGLEVGQVVTGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNV 243
Query: 311 GDTLKVCL 318
D LKV +
Sbjct: 244 NDELKVMI 251
>gi|354568686|ref|ZP_08987849.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353539940|gb|EHC09420.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 337
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT EEF + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 12 IGFTHEEFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 71
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + EF I+ + + L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 72 SPEEV-LQSNETREFYILSDENEEGQLTLSIRRIEYMRAWERVRQLQAEDATVRSGVFAT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 131 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 190
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +V D +KV
Sbjct: 191 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIDTPHSVFNVNDEVKVM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|428306344|ref|YP_007143169.1| 30S ribosomal protein S1P [Crinalium epipsammum PCC 9333]
gi|428247879|gb|AFZ13659.1| SSU ribosomal protein S1P [Crinalium epipsammum PCC 9333]
Length = 391
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHDDFAALLDKYDYHFSPGDVVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|282901377|ref|ZP_06309302.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281193656|gb|EFA68628.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 343
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G+ LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEQLPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+IS + + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISQEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|282895318|ref|ZP_06303520.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281199624|gb|EFA74484.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 343
Score = 240 bits (613), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSIEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQKEDATVRSDVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G+ LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEQLPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VVIGTV+ +KPYGAFIDIGG++GLLH+S+IS + + +V D +KV
Sbjct: 190 KMNRLEVGEVVIGTVRGIKPYGAFIDIGGVSGLLHISEISQEHIDTPHSVFNVNDEVKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|428314208|ref|YP_007125185.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428255820|gb|AFZ21779.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 339
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/248 (47%), Positives = 175/248 (70%), Gaps = 3/248 (1%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
RTA ++ + FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE
Sbjct: 6 RTATVD-IGFTHDDFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPIQE 64
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
I+++ + EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V
Sbjct: 65 MSINRVDNPEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATV 123
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ V N+GG + +EGLRGF+P S IS++ E+L+G++L LKF+EVDE+++RLVLS+
Sbjct: 124 RSLVFATNRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELQLKFLEVDEDRNRLVLSH 183
Query: 252 RKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+A+ + + +L +G VVIG+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V
Sbjct: 184 RRALVERKMNRLEVGEVVIGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNV 243
Query: 311 GDTLKVCL 318
D +KV +
Sbjct: 244 NDEVKVMI 251
>gi|37520556|ref|NP_923933.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
gi|35211550|dbj|BAC88928.1| 30S ribosomal protein S1 [Gloeobacter violaceus PCC 7421]
Length = 320
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 115/241 (47%), Positives = 166/241 (68%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F L +YD+ G VKGTVF + RGAL+DI AK++AYLP QE I+++
Sbjct: 13 IGFTREDFERLLSQYDYRFNPGDIVKGTVFSLEPRGALIDIGAKTAAYLPLQEMSINRVD 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + G +F I+ + + L LS+R I+Y AWER R+LQ+ED V+ K+
Sbjct: 73 DPTEV-LGEGDTLDFFILSDENEEGQLTLSIRRIEYMKAWERVRKLQTEDQTVRAKIFAV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S +S++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 132 NRGGALVRIEGLRGFIPGSHLSTREPKEELIGEELPLKFLEVDEERNRLVLSHRRALVER 191
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V GD +KV
Sbjct: 192 RMNKLEAGQVVIGRVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVGDEVKVM 251
Query: 318 L 318
+
Sbjct: 252 V 252
>gi|78212018|ref|YP_380797.1| 30S ribosomal protein S1 [Synechococcus sp. CC9605]
gi|78196477|gb|ABB34242.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 386
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 131/313 (41%), Positives = 201/313 (64%), Gaps = 14/313 (4%)
Query: 12 RCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELN-----QLFEE 66
R PP+S T + QIQ ++ ++ N T SA ++ + E E+L ++
Sbjct: 20 RQPPMSAT-----PTEEQIQHQVQDA--NATEASAETVAADQAFEGEDLTIPEDVPTADD 72
Query: 67 AYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY 126
R + ++ FT++EF + L KYD+N + G V GTVF +++GA++DI AK++A+
Sbjct: 73 PSSRAASRSLDDAGFTIDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAF 132
Query: 127 LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+P QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ
Sbjct: 133 MPLQEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQK 191
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
ED + +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++R
Sbjct: 192 EDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNR 251
Query: 247 LVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
LVLS+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ +
Sbjct: 252 LVLSHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPH 311
Query: 306 TVLQPGDTLKVCL 318
+VL D +KV +
Sbjct: 312 SVLNVNDQMKVMI 324
>gi|159902888|ref|YP_001550232.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888064|gb|ABX08278.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9211]
Length = 371
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + +GV FTLEEF S L KYD+N + G V GTVF + +GA++DI AK++A++P
Sbjct: 61 RVKKHDFDGVGFTLEEFDSLLSKYDYNFKPGDIVNGTVFALETKGAMIDIGAKTAAFMPM 120
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + P +F I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 121 QEVSINRVEGLSDV-LQPSEVRQFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 179
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ + LPLKF+EVDEE++RLVL
Sbjct: 180 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVAEFLPLKFLEVDEERNRLVL 239
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 240 SHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 299
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 300 NVNDQMKVMI 309
>gi|116072655|ref|ZP_01469921.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
gi|116064542|gb|EAU70302.1| 30S ribosomal protein S1 [Synechococcus sp. BL107]
Length = 367
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R +E FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 57 RANRNNLEDAGFTLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + ++PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LLPGEIREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|148238851|ref|YP_001224238.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847390|emb|CAK22941.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 367
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + M+ FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 57 RAASRDMDNAGFTLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|78778703|ref|YP_396815.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9312]
gi|78712202|gb|ABB49379.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 366
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 172/244 (70%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
++ FT EEF S L KYD+N +LG VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 60 LDNAGFTQEEFASLLGKYDYNFKLGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 119
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ +++ + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 120 RVEGLDDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 178
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 179 FATNRGGALVRVEGLRGFIPGSHISARRVKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 238
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 239 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVSDQM 298
Query: 315 KVCL 318
KV +
Sbjct: 299 KVMI 302
>gi|124025115|ref|YP_001014231.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL1A]
gi|123960183|gb|ABM74966.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
NATL1A]
Length = 369
Score = 231 bits (590), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 175/255 (68%), Gaps = 2/255 (0%)
Query: 65 EEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSS 124
+++ R + +E FTL+EF S L KYD+N + G V GTVF +++GA++DI AK++
Sbjct: 54 DDSSSRINKSDLESAGFTLDEFASLLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTA 113
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL 184
A++P QE I++++ + + + P EF I+ E D L LS+R I+Y+ AWER RQL
Sbjct: 114 AFMPMQEVSINRVEGLSDV-LQPSEIREFFIMTEENEDGQLSLSIRRIEYQRAWERVRQL 172
Query: 185 QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQ 244
Q ED + +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE+
Sbjct: 173 QKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVADFLPLKFLEVDEER 232
Query: 245 SRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISH+ +
Sbjct: 233 NRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIET 292
Query: 304 IATVLQPGDTLKVCL 318
+VL D +KV +
Sbjct: 293 PHSVLNVNDQMKVMI 307
>gi|88807804|ref|ZP_01123315.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
gi|88787843|gb|EAR18999.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7805]
Length = 368
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R M+ FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 58 RAANRDMDNAGFTLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 117
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 118 QEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 176
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 177 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 236
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 237 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 296
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 297 NVNDQMKVMI 306
>gi|72383525|ref|YP_292880.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. NATL2A]
gi|72003375|gb|AAZ59177.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 369
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/255 (45%), Positives = 175/255 (68%), Gaps = 2/255 (0%)
Query: 65 EEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSS 124
+++ R + +E FTL+EF S L KYD+N + G V GTVF +++GA++DI AK++
Sbjct: 54 DDSSSRINKSDLETAGFTLDEFASLLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTA 113
Query: 125 AYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL 184
A++P QE I++++ + + + P EF I+ E D L LS+R I+Y+ AWER RQL
Sbjct: 114 AFMPMQEVSINRVEGLSDV-LQPSEIREFFIMTEENEDGQLSLSIRRIEYQRAWERVRQL 172
Query: 185 QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQ 244
Q ED + +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE+
Sbjct: 173 QKEDATIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVADFLPLKFLEVDEER 232
Query: 245 SRLVLSNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+RLVLS+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISH+ +
Sbjct: 233 NRLVLSHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIET 292
Query: 304 IATVLQPGDTLKVCL 318
+VL D +KV +
Sbjct: 293 PHSVLNVNDQMKVMI 307
>gi|260436204|ref|ZP_05790174.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
gi|260414078|gb|EEX07374.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8109]
Length = 363
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 117/250 (46%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + ++ FTL+EF + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 53 RAASRSLDDAGFTLDEFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 112
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 113 QEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDA 171
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 172 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 231
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 232 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 291
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 292 NVNDQMKVMI 301
>gi|33239803|ref|NP_874745.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237329|gb|AAP99397.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 367
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 172/250 (68%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + +G F+LEEF S L KYD+N + G V GTVF + +GA++DI AK++A++P
Sbjct: 57 RVKKYDFDGAGFSLEEFDSLLGKYDYNFKPGDIVNGTVFALETKGAMIDIGAKTAAFMPM 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + P +F I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LQPSEIRQFFIMSEENEDGQLSLSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ + LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKAKEELVAEYLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|78185433|ref|YP_377868.1| 30S ribosomal protein S1 [Synechococcus sp. CC9902]
gi|78169727|gb|ABB26824.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 367
Score = 230 bits (587), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 174/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R +E FT+++F + L KYD+N + G V GTVF +++GA++DI AK++A++P
Sbjct: 57 RANRNNLEEAGFTIDDFAALLSKYDYNFKPGDIVNGTVFALESKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + ++PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LLPGEIREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|427722325|ref|YP_007069602.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354045|gb|AFY36768.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 327
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHEDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APDEVLQAEETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRQAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V Q D LKV
Sbjct: 190 KMNGLEVGEVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFQVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|56750845|ref|YP_171546.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81299505|ref|YP_399713.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|59802964|sp|P46228.4|RS1_SYNP6 RecName: Full=30S ribosomal protein S1
gi|56685804|dbj|BAD79026.1| 30S ribosomal protein S1 [Synechococcus elongatus PCC 6301]
gi|81168386|gb|ABB56726.1| SSU ribosomal protein S1P [Synechococcus elongatus PCC 7942]
Length = 307
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 171/245 (69%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I
Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ +
Sbjct: 67 NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A
Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D
Sbjct: 186 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 245
Query: 314 LKVCL 318
+KV +
Sbjct: 246 VKVMI 250
>gi|86609793|ref|YP_478555.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558335|gb|ABD03292.1| ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 322
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 168/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++A+LP QE I +++
Sbjct: 9 VGFTTEDFAALLDKYDYHFSPGEIVAGTVFSVEPRGALIDIGAKTAAFLPLQEMSISRLE 68
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + PG EF I+ E + L LS+R I+Y AWER RQLQ ED V+ +
Sbjct: 69 DPHEM-LQPGETREFFILTEENEEGQLTLSIRRIEYMRAWERVRQLQKEDATVRSTIFAT 127
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 128 NRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEDRNRLVLSHRRALVER 187
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISHD V +V D +KV
Sbjct: 188 KMNKLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHDHVDTPHSVFNVNDEVKVM 247
Query: 318 L 318
+
Sbjct: 248 I 248
>gi|443478405|ref|ZP_21068163.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
gi|443016312|gb|ELS31002.1| SSU ribosomal protein S1P [Pseudanabaena biceps PCC 7429]
Length = 342
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 119/250 (47%), Positives = 171/250 (68%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R +TA V FT E+F L+KYD++ G V GTVF + RGAL+DI AK++AY+P
Sbjct: 4 RAKTATTTNVGFTHEDFAKLLDKYDYHFSPGDIVAGTVFSIEPRGALIDIGAKTAAYIPI 63
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I+++ EE +E F++ ENE + L LS+R I+Y AWER RQLQ+ED
Sbjct: 64 QEMSINRVDQPEEVLQNNETREFFILADENE-EGQLTLSIRRIEYMRAWERVRQLQAEDA 122
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
V+ + N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDE+++RLVL
Sbjct: 123 TVRSLIFATNRGGALVRIEGLRGFIPGSHISTRKPKEELVGEELPLKFLEVDEDRNRLVL 182
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISH+ + V
Sbjct: 183 SHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVF 242
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 243 NVNDEVKVMI 252
>gi|91070108|gb|ABE11032.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC729]
Length = 363
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
E FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FENAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVNDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|428217034|ref|YP_007101499.1| 30S ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
gi|427988816|gb|AFY69071.1| SSU ribosomal protein S1P [Pseudanabaena sp. PCC 7367]
Length = 391
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/245 (48%), Positives = 169/245 (68%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT E+F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I
Sbjct: 7 PTVDIGFTHEDFAALLDKYDYHFSPGDIVPGTVFSLEPRGALIDIGAKTAAYIPIQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++I H +E +E F+I ENE + L LS+R I+Y AWER RQLQ ED V+
Sbjct: 67 NRIDHPDEVLQNEDTREFFIIADENE-EGQLTLSIRRIEYMRAWERVRQLQEEDATVRSL 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
+ N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A
Sbjct: 126 IFATNRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISHD + V D
Sbjct: 186 LVERKMNKLEVGEVVIGVVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHNVFNVNDE 245
Query: 314 LKVCL 318
+KV +
Sbjct: 246 VKVMI 250
>gi|33866517|ref|NP_898076.1| 30S ribosomal protein S1 [Synechococcus sp. WH 8102]
gi|33633295|emb|CAE08500.1| 30S ribosomal protein S1, homolog A [Synechococcus sp. WH 8102]
Length = 367
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 116/250 (46%), Positives = 173/250 (69%), Gaps = 2/250 (0%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
R + ++ FT++EF + L KYD+N + G V GTVF + +GA++DI AK++A++P
Sbjct: 57 RASSRNLDDAGFTIDEFAALLSKYDYNFKPGDIVNGTVFALEAKGAMIDIGAKTAAFMPL 116
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++++ + + + PG EF I+ E D L LS+R I+Y+ AWER RQLQ ED
Sbjct: 117 QEVSINRVEGLSDV-LQPGEIREFFIMSEENEDGQLALSVRRIEYQRAWERVRQLQKEDA 175
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
+ +V N+GG + VEGLRGF+P S IS++ EEL+ LPLKF+EVDEE++RLVL
Sbjct: 176 TIYSEVFATNRGGALVRVEGLRGFIPGSHISTRKPKEELVADFLPLKFLEVDEERNRLVL 235
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ + +VL
Sbjct: 236 SHRRALVERKMNRLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHIETPHSVL 295
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 296 NVNDQMKVMI 305
>gi|170077576|ref|YP_001734214.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169885245|gb|ACA98958.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
Length = 326
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHDDFAALLDKYDYHFSPGDIVPGTVFSMEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+E +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 TPDEVLQSDETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQAEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRQAKEDLVGQELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V Q D LKV
Sbjct: 190 KMNGLEVGEVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFQVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|1075612|pir||S51485 ribosomal protein S1 - Synechococcus sp. (PCC 6301)
gi|666973|dbj|BAA05946.1| ribosomal protein S1 [Synechococcus elongatus PCC 6301]
Length = 307
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 170/245 (69%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+ P QE I
Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFFPVQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ +
Sbjct: 67 NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A
Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D
Sbjct: 186 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 245
Query: 314 LKVCL 318
+KV +
Sbjct: 246 VKVMI 250
>gi|91069895|gb|ABE10824.1| 30S ribosomal protein S1 A [uncultured Prochlorococcus marinus
clone ASNC2150]
Length = 363
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FDNAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVSDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|254526843|ref|ZP_05138895.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
gi|221538267|gb|EEE40720.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9202]
Length = 363
Score = 227 bits (579), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FDNAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVNDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|126695675|ref|YP_001090561.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9301]
gi|126542718|gb|ABO16960.1| 30S ribosomal protein S1-like protein A [Prochlorococcus marinus
str. MIT 9301]
Length = 363
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 168/244 (68%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FDNAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGNVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVNDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|123967873|ref|YP_001008731.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123197983|gb|ABM69624.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
AS9601]
Length = 363
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FDNAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARRIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVSDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|157412674|ref|YP_001483540.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387249|gb|ABV49954.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 363
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 115/244 (47%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ FT EEF S L KYD+N + G VKGTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 FDNAGFTQEEFASLLGKYDYNFKPGDLVKGTVFALEPKGAMIDIGAKTAAFMPVQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLNDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ ++L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKDDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVNDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|149391139|gb|ABR25587.1| 30S ribosomal protein S1 [Oryza sativa Indica Group]
Length = 217
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/123 (89%), Positives = 118/123 (95%)
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
+G NKGGVVA VEGL+GFVPFSQ+SSKSTAEELL K+LPLKFVEVDEEQ RLVLSNRKAM
Sbjct: 1 IGGNKGGVVALVEGLKGFVPFSQVSSKSTAEELLDKELPLKFVEVDEEQGRLVLSNRKAM 60
Query: 256 ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
ADSQAQLGIGSVV+GTV+SLKPYGAFIDIGGINGLLHVSQISHDRVADI+TVLQPGDTLK
Sbjct: 61 ADSQAQLGIGSVVLGTVESLKPYGAFIDIGGINGLLHVSQISHDRVADISTVLQPGDTLK 120
Query: 316 VCL 318
V +
Sbjct: 121 VMI 123
>gi|22299589|ref|NP_682836.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
gi|22295773|dbj|BAC09598.1| 30S ribosomal protein S1 [Thermosynechococcus elongatus BP-1]
Length = 330
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT +F + L++YD++ G V GTVF + +GAL+DI AK++AY+P QE I++I+
Sbjct: 10 VGFTHADFAALLDRYDYHFNPGDIVAGTVFSIEPKGALIDIGAKTAAYIPIQEMSINRIE 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + P EF I+ + + L LS+R I+Y AWER RQLQ+ED V+ +V
Sbjct: 70 SPEEV-LQPNETREFFILADENEEGQLTLSIRRIEYMRAWERVRQLQAEDATVRSQVFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ EEL+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISTRVNKEELVGEELPLKFLEVDEERNRLVLSHRRALVER 188
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 189 KMNKLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDQVKVM 248
Query: 318 L 318
+
Sbjct: 249 I 249
>gi|254415806|ref|ZP_05029564.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196177512|gb|EDX72518.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 323
Score = 226 bits (577), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 116/241 (48%), Positives = 170/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT ++F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P QE I+++
Sbjct: 11 IGFTHDDFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPIQEMSINRVD 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ ENE D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 71 APEEVLQSNETREFFILTDENE-DGQLTLSIRRIEYMRAWERVRQLQTEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVER 189
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D LKV
Sbjct: 190 KMNRLEVGEVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDELKVM 249
Query: 318 L 318
+
Sbjct: 250 I 250
>gi|86607005|ref|YP_475768.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86555547|gb|ABD00505.1| ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 323
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/241 (48%), Positives = 167/241 (69%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V FT E+F + L+KYD++ G V GTVF + GAL+DI AK++A+LP QE I +I+
Sbjct: 10 VGFTTEDFAALLDKYDYHFSPGEIVAGTVFSVEPGGALIDIGAKTAAFLPLQEMSISRIE 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + PG EF I+ E + L LS+R I+Y AWER RQLQ ED V+ +
Sbjct: 70 DPHEV-LQPGETREFFILTEENEEGQLTLSIRRIEYMRAWERVRQLQKEDATVRATIFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S ISS+ EEL+G++LPLKF+EVDE+++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISSRKPKEELVGEELPLKFLEVDEDRNRLVLSHRRALVER 188
Query: 259 QA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G VV+GTV+ +KPYGAFIDIGG++GLLH+S+ISH+ V +V D +KV
Sbjct: 189 KMNKLEVGEVVVGTVRGIKPYGAFIDIGGVSGLLHISEISHEHVDTPHSVFNVNDEVKVM 248
Query: 318 L 318
+
Sbjct: 249 I 249
>gi|123965580|ref|YP_001010661.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9515]
gi|123199946|gb|ABM71554.1| 30S ribosomal protein S1, protein A [Prochlorococcus marinus str.
MIT 9515]
Length = 363
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/244 (46%), Positives = 169/244 (69%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
++ FT E+F S L KYD+N + G V GTVF + +GA++DI AK++A++P QE I+
Sbjct: 57 LDSAGFTQEDFASLLGKYDYNFKPGDLVNGTVFALEPKGAMIDIGAKTAAFMPMQEVSIN 116
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+++ + + + P EF I+ E D L LS+R I+Y+ AWER RQLQ ED + +V
Sbjct: 117 RVEGLSDV-LQPSESREFFIMSEENEDGQLALSIRRIEYQRAWERVRQLQKEDATIYSEV 175
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
N+GG + VEGLRGF+P S IS++ E+L G+ LPLKF+EVDEE++RLVLS+R+A+
Sbjct: 176 FATNRGGALVRVEGLRGFIPGSHISARKIKEDLEGEYLPLKFLEVDEERNRLVLSHRRAL 235
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISH+ + VL D +
Sbjct: 236 VEKKMNRLEVGEVVVGSVKGIKPYGAFIDIGGVSGLLHISEISHEHIETPHNVLNVTDQM 295
Query: 315 KVCL 318
KV +
Sbjct: 296 KVMI 299
>gi|428222610|ref|YP_007106780.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427995950|gb|AFY74645.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 335
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 169/250 (67%), Gaps = 4/250 (1%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPT 129
+ +T P V FT +F + L+KYD++ G V GTVF + RGAL+DI AK++AY+P
Sbjct: 4 QTKTPP--NVGFTHADFAALLDKYDYHFSPGDIVAGTVFSLEPRGALIDIGAKTAAYIPI 61
Query: 130 QEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV 189
QE I++I EE +E F++ ENE + L LS+R I+Y AWER RQLQ ED
Sbjct: 62 QEMSINRIDQPEEVLQDNDTREFFILADENE-EGQLTLSIRRIEYMRAWERVRQLQKEDA 120
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVL 249
V+ + N+GG + +EGLRGF+P S IS++ EEL+ ++LPLKF+EVDE+++RLVL
Sbjct: 121 TVRALIFATNRGGALVRIEGLRGFIPGSHISTRKVKEELVNEELPLKFLEVDEDRNRLVL 180
Query: 250 SNRKAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
S+R+A+ + + +L +G VVIG V+ +KPYGAFIDIGG++GLLH+S+ISHD + V
Sbjct: 181 SHRRALVERKMNKLEVGEVVIGVVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHNVF 240
Query: 309 QPGDTLKVCL 318
D +KV +
Sbjct: 241 NVNDEVKVMI 250
>gi|255085236|ref|XP_002505049.1| predicted protein [Micromonas sp. RCC299]
gi|226520318|gb|ACO66307.1| predicted protein [Micromonas sp. RCC299]
Length = 387
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 114/237 (48%), Positives = 160/237 (67%), Gaps = 3/237 (1%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
+EF L Y F+ ++G +V G VF D +GA VDI AK++A P EA + + ++ A
Sbjct: 71 KEFERLLVDYQFSYKVGDRVTGKVFHCDAKGAWVDIGAKAAALCPGSEASLAQARNAA-A 129
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
G + EF II +++ D SL LS+R IQ E AW RCR++Q+ D V V+ N+GG+
Sbjct: 130 VFDIGEEYEFEIIRDDDGDGSLTLSVRKIQLEAAWNRCREMQANDEAVNSVVLSVNRGGL 189
Query: 204 VAEVEGLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+ EVE LRGFVP S I+ + +EL+G+ +P+KF+EVDEE++RLV+SNR A S
Sbjct: 190 LVEVEHLRGFVPQSHIAMRVPNRDELIGQSVPVKFLEVDEEKNRLVMSNRLATDVVSGEG 249
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
LG+G V G VQ++KPYGAF+D+GG++GLLH+SQISHDR+ + VL PGD LKV +
Sbjct: 250 LGVGDVCKGVVQAVKPYGAFVDVGGVSGLLHISQISHDRIVAVENVLAPGDELKVLI 306
>gi|303282543|ref|XP_003060563.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458034|gb|EEH55332.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 343
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 162/237 (68%), Gaps = 3/237 (1%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
+EF L Y+F+ + G +V G VF D++GA VDI AK++A P EA + +++
Sbjct: 24 DEFAKLLVNYEFSYKSGDRVTGKVFHCDSKGAWVDIGAKAAALCPGSEASLAAVRNAASV 83
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G + EF II +++ D L LS+R IQ E AW RCR++Q+ D V +V+ N+GG+
Sbjct: 84 FDI-GEEYEFEIIRDDDGDGCLTLSVRKIQLEAAWNRCREMQAADEAVSAEVLSVNRGGL 142
Query: 204 VAEVEGLRGFVPFSQISSKS-TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ 261
+ EVE LRGFVP S I+ ++ E+L+G+ +P+KF+EVDE+++RLV+SNR A S
Sbjct: 143 LVEVEHLRGFVPQSHIAIRTPNREDLIGQKVPVKFLEVDEDKNRLVMSNRLATDVVSGEG 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
LG+G V G VQ++KPYGAF+D+GG++GLLH+SQISHDR+ + VL PGD LKV +
Sbjct: 203 LGVGDVCKGIVQAVKPYGAFVDVGGVSGLLHISQISHDRIVAVENVLSPGDELKVLI 259
>gi|145343076|ref|XP_001416292.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
gi|144576517|gb|ABO94585.1| Plastid ribosomal protein S1, imported to chloroplast, small
ribosomal subunit [Ostreococcus lucimarinus CCE9901]
Length = 339
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 5/243 (2%)
Query: 78 GVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
G ++T EF S L+KY +N ++G + G + D +GA V+I AKS A PT EA + +
Sbjct: 41 GAAYT--EFASLLDKYQYNYKVGDVISGKIKACDAKGAWVEIGAKSEALCPTSEASLGNV 98
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ + +F II ++ + + LS+R ++ AW+RCR+ Q++D + G V+
Sbjct: 99 RNAAAVFDID-CDYDFEIIQDDNGEGCMTLSVRRMELAKAWDRCREAQADDAALTGDVLS 157
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKS-TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
N+GG++ EVE LRGFVP S I ++ EEL+G+ LP KF+EVDEE++RLVLS+R A
Sbjct: 158 VNRGGLLVEVEKLRGFVPQSHIGVRTLNREELIGQQLPFKFIEVDEEKNRLVLSHRLATD 217
Query: 257 DSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
A+ L +G VV G VQ++KPYGAF+D+GG +GLLH+SQISH+R+ + VL PGD +K
Sbjct: 218 MVSAEGLEVGDVVEGMVQAVKPYGAFVDVGGQSGLLHISQISHERIVAVENVLSPGDRIK 277
Query: 316 VCL 318
V +
Sbjct: 278 VLV 280
>gi|219114931|ref|XP_002178261.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409996|gb|EEC49926.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 284
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 166/244 (68%), Gaps = 5/244 (2%)
Query: 77 EGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
+ + F+ +EF A+++ ++ E V+GT G LVDI AK+SAYLP QEA + +
Sbjct: 1 DSIPFSYDEFAKAVDETEYGFERNAVVQGTAVEYSGSGCLVDIGAKASAYLPDQEASLDQ 60
Query: 137 IKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
++E+A VP EF II E + + L++S++ I+Y+ AWE+ + ED +++ KV
Sbjct: 61 DLNIEDA--VPLDTPMEFQIISEEDENGQLLVSIKRIEYKKAWEKVLSMAEEDQILEAKV 118
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
+ N+GG + VEGLR F+P S ++ + E+L+G +L LKF+EV++E ++LV+SNRKA+
Sbjct: 119 IAVNRGGAICLVEGLRAFLPGSHLTGQLPDEDLIGNNLQLKFLEVNQETNKLVVSNRKAV 178
Query: 256 ADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ Q A L G +V G V++LKPYGAF+++GG++GLLH+SQIS+DR+ D+ VLQPG +
Sbjct: 179 VEQQMADLSRGDLVAGMVKALKPYGAFVEVGGMSGLLHISQISYDRIDDLEKVLQPGMQV 238
Query: 315 KVCL 318
K C+
Sbjct: 239 K-CM 241
>gi|412986743|emb|CCO15169.1| 30S ribosomal protein S1 [Bathycoccus prasinos]
Length = 363
Score = 202 bits (513), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 5/239 (2%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
++F L Y + ++G K+ G V + +GA VDI K+ A PT E + +++ A
Sbjct: 58 DDFSGMLGDYLVDYKVGDKIMGKVSAMNTKGAYVDIGGKAPALCPTVECSLASVRNAA-A 116
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
G + EF I+ ++ + S+ LS+R IQ E AWERCRQ Q++D+ + +V+ N+GG+
Sbjct: 117 VFDEGQEYEFEIVKGDDGEGSMTLSVRKIQLEAAWERCRQAQADDLALSSEVLSVNRGGI 176
Query: 204 VAEVEGLRGFVPFSQISSK---STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
+ EVE LRGF+P S + + +EL+G+ LP+KF+EVDEE++RLV S+R A
Sbjct: 177 LVEVENLRGFIPQSHLGPRLALGDRDELVGQTLPVKFIEVDEEKNRLVASHRLATDLVSG 236
Query: 261 Q-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ L +G VV G VQ++KPYGAF+D+GG +GLLH+SQISH+R+ + VL PGD LKV +
Sbjct: 237 EGLDVGDVVTGIVQAVKPYGAFVDVGGQSGLLHISQISHERIVAVENVLSPGDELKVLI 295
>gi|307108388|gb|EFN56628.1| hypothetical protein CHLNCDRAFT_22007 [Chlorella variabilis]
Length = 327
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 151/233 (64%), Gaps = 4/233 (1%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F L+ +DF+ G K TV D RGA VDI KS+A+ PT E + I +
Sbjct: 29 FEQLLDTHDFDFHTGDKASRTVVRVDQRGAYVDIGGKSTAFCPTAELALANIPRSTQVVG 88
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
++ FV+I E E + L+LSL+ ++ ++AW+R RQ +DV V+G+VV N+GGV+
Sbjct: 89 THSCRD-FVVIRE-ERNGDLMLSLKRMELQVAWQRLRQYLEDDVSVEGRVVATNRGGVIV 146
Query: 206 EVEGLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-AQLG 263
EVE +RGF P SQ+ + T EELL + + K EVDEE++RL+LSN++ +AD +
Sbjct: 147 EVECIRGFCPGSQLGQRVQTFEELLDRTMAFKVTEVDEEKARLMLSNKRVVADERVGGFK 206
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV GTV S+KPYGAF+DIGG +GLLH+SQISHDR+ ++ VL GD +KV
Sbjct: 207 VGDVVEGTVISVKPYGAFVDIGGASGLLHISQISHDRITNVDKVLSEGDRIKV 259
>gi|224006742|ref|XP_002292331.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
gi|220971973|gb|EED90306.1| RS1, ribosomal protein 1 [Thalassiosira pseudonana CCMP1335]
Length = 287
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 158/242 (65%), Gaps = 3/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V F+ F A+ D+ VKGTV D G +VDI AK+SAYLP QEA + + +
Sbjct: 1 VGFSYASFADAVAATDYAFNRNDIVKGTVVQYDKGGCIVDIGAKASAYLPLQEATLFQEQ 60
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
GI+ +E +F II E + + L++S+R IQY AW++ Q D V + + V
Sbjct: 61 GQSIEGIIDIDEERQFEIISEEDENGQLLVSIRRIQYREAWDKVIAKQDSDEVFEAECVS 120
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GG + VEGLR F+P S ++ + ++L+G+ LPLKF+EV++E ++LV+SNR+A+ +
Sbjct: 121 VNRGGAIFLVEGLRAFLPGSHLTGRLPDDDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVE 180
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
Q A+L G V+ G V++LKPYGAF+++GG++GLLH+SQIS DR+ D+ VLQPG +K
Sbjct: 181 EQMAELSRGDVIDGIVKALKPYGAFVEVGGMSGLLHISQISMDRITDLEQVLQPGQKIK- 239
Query: 317 CL 318
C+
Sbjct: 240 CM 241
>gi|334119758|ref|ZP_08493843.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
gi|333457920|gb|EGK86541.1| RNA binding S1 domain protein [Microcoleus vaginatus FGP-2]
Length = 299
Score = 195 bits (496), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 155/242 (64%), Gaps = 6/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALE++++ + G V+G VF D+ GA VDI KSSA+LP +EA + +
Sbjct: 14 SFSMDDFAKALEQHNYEFQKGQVVRGKVFEYDSNGAYVDIGGKSSAFLPIEEAALRTVTD 73
Query: 140 VEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E +VP L EE F+II E +AD + LSLR +Q + AWE LQ V++ +V G
Sbjct: 74 LSE--VVP-LDEERDFLIIREQDADGQVTLSLRQLQIQQAWEDLIDLQETGKVLQVRVSG 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
ANKGGV +V+G+RGF+P S + + E L+G+ L + F+EVD E+ +LVLS R A +
Sbjct: 131 ANKGGVTVDVQGMRGFIPRSHLVERDNLESLIGQSLSVNFLEVDREREKLVLSQRMATQS 190
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ L IG +V G V S+KP+G F+D+ G++GLLH+ Q+S + ++ V PG LK
Sbjct: 191 NAFKDLQIGQLVEGKVSSIKPFGVFVDLEGVSGLLHIKQVSQKYIDNLGKVFAPGQPLKA 250
Query: 317 CL 318
+
Sbjct: 251 IV 252
>gi|428319922|ref|YP_007117804.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
gi|428243602|gb|AFZ09388.1| RNA binding S1 domain protein [Oscillatoria nigro-viridis PCC 7112]
Length = 299
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 156/242 (64%), Gaps = 6/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALE++++ + G V+G VF D+ GA VDI KSSA+LP +EA + +
Sbjct: 14 SFSMDDFAKALEQHNYEFQKGQVVRGKVFEYDSNGAYVDIGGKSSAFLPIEEAALRTVTD 73
Query: 140 VEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E +VP L EE F+II E +AD + LSLR +Q + AWE +LQ V++ +V G
Sbjct: 74 LSE--VVP-LDEERDFLIIREQDADGQVTLSLRQLQIQQAWEDLIELQETGKVLQVRVSG 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
ANKGGV +V+G+RGF+P S + + E L+G+ L + F+EVD E+ +LVLS R A +
Sbjct: 131 ANKGGVTVDVQGMRGFIPRSHLVDRDNLESLIGQSLSVNFLEVDREREKLVLSQRMATQS 190
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ L IG +V G V S+KP+G F+D+ G++GLLH+ Q+S + ++ + PG LK
Sbjct: 191 NAFKDLQIGQLVEGKVSSIKPFGVFVDLEGVSGLLHIKQVSQKYIDNLGKLFAPGQPLKA 250
Query: 317 CL 318
+
Sbjct: 251 IV 252
>gi|397620579|gb|EJK65790.1| hypothetical protein THAOC_13316, partial [Thalassiosira oceanica]
Length = 372
Score = 193 bits (491), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 157/242 (64%), Gaps = 3/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V F+ + F A+ D++ V GTV D G +VDI AKSSA+LP QEA + + +
Sbjct: 42 VGFSYDSFEEAVSATDYSFNRNDVVTGTVVQYDKGGCVVDIGAKSSAFLPQQEAALVQEQ 101
Query: 139 HVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E I + EF II E + + L++S+R I+Y AW++ + D V + V
Sbjct: 102 GAQIENLIELDAEREFQIISEEDENGQLLVSVRRIEYRQAWDKVVAKRDTDEVFDAECVS 161
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GG + VEGLR F+P S ++ + E+L+G+ LPLKF+EV++E ++LV+SNR+A+ +
Sbjct: 162 VNRGGAIFLVEGLRAFLPGSHLTGRLPDEDLVGQTLPLKFLEVNQEDNKLVVSNRRAVVE 221
Query: 258 SQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+Q + L G V+ G V++LKPYGAF+++GG++GLLH+SQIS DR+ D+ VLQPG +K
Sbjct: 222 TQMESLSRGDVIDGLVKALKPYGAFVEVGGMSGLLHISQISMDRINDLEAVLQPGQKIK- 280
Query: 317 CL 318
C+
Sbjct: 281 CM 282
>gi|443327239|ref|ZP_21055869.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
gi|442793178|gb|ELS02635.1| ribosomal protein S1 [Xenococcus sp. PCC 7305]
Length = 299
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 98/247 (39%), Positives = 153/247 (61%), Gaps = 4/247 (1%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
A SF++++F ALEKYD+ G VKG V D+ GA +DI K ++PT+E
Sbjct: 7 ASKNNASFSMDDFAKALEKYDYEFAKGQIVKGKVVQYDSEGAYIDIGGKCPGFVPTRETA 66
Query: 134 IHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+ ++ + A I+P G + EF+II E AD + LS R +Q + AW++ ++ +
Sbjct: 67 LQVVEDI--ADIIPLGEEFEFLIIQEQNADGQVTLSRRQMQLQDAWDKVTEISESSKSTQ 124
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
+V G NKGG+ +VEGLRGF+P S + + E L+G+ L + F+EV+ E+ +LVLS R
Sbjct: 125 IRVTGVNKGGITGDVEGLRGFIPRSHLRQRDNLESLIGQLLTVTFIEVNPEKRKLVLSQR 184
Query: 253 KAM-ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
AM A++ +L G++V GT+ ++KPYGAF+D+GG+ GLLHV ++S R + +LQ G
Sbjct: 185 NAMRAEALTRLVEGALVTGTIVNMKPYGAFVDLGGVTGLLHVKEVSGTRTDSLENILQIG 244
Query: 312 DTLKVCL 318
+KV +
Sbjct: 245 QEIKVVI 251
>gi|428171104|gb|EKX40024.1| ribosomal protein S1, chloroplastic [Guillardia theta CCMP2712]
Length = 404
Score = 191 bits (485), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 158/239 (66%), Gaps = 3/239 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F +F SA+ K+D ++G V G V + GALVDI KSSAYL EA + ++ +
Sbjct: 92 FDYSDFESAIAKFDNTFQVGDVVVGQVVQFEQGGALVDIGGKSSAYLGAAEASMQRVDDI 151
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + +E +I GE+E + + LS+R +++ AWER RQ+Q+ED + +++ N+
Sbjct: 152 EMFLSIADNREFQIISGEDE-NGQVRLSIRKLEFARAWERVRQIQAEDCTIMAEILSINR 210
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ- 259
GG + EGLRGF+P S + + E+ +G +PLKF+EVD+ ++RLV+SNR+A+ +++
Sbjct: 211 GGALINFEGLRGFLPGSH-APQGMTEDTVGTMIPLKFLEVDQAKNRLVVSNRRAVVETKL 269
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L G +V G V+S+KPYGAF+DIGGI+GLLH+SQISHD ++D++ VLQ G +K +
Sbjct: 270 VNLEPGQLVTGIVRSIKPYGAFVDIGGISGLLHISQISHDHISDVSKVLQEGQEIKAMI 328
>gi|302847311|ref|XP_002955190.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
gi|300259482|gb|EFJ43709.1| plastid/chloroplast ribosomal protein S1 [Volvox carteri f.
nagariensis]
Length = 431
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LE D++ ++G KV GTV D+ GA V+I AK+ A+ P E ++K EA
Sbjct: 124 EEVEDMLEAVDYDFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEA 183
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ PG+K +F+++ + E +++SL ++ W R RQLQ ED+ V V NKGG+
Sbjct: 184 -LRPGMKRDFMVVQDEEEYGQVIVSLAAMEATTFWTRIRQLQEEDITVSVTVESVNKGGM 242
Query: 204 VAEVEGLRGFVPFSQISSKSTA---EELLGKDLPLKFVEVDEEQSRLVLSNRKA--MADS 258
+ + GF+P SQ TA E L+G +L +KF+EVDEE RLV S+++A M +
Sbjct: 243 LVKFGIYDGFIPVSQFGPSITADSMESLIGYELQVKFLEVDEEAERLVFSHKRASSMVTN 302
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
Q +G VV G VQS+KPYGAFID+GG+ GLLHVSQ+SHDRV + +L GD +KV
Sbjct: 303 DVQGFKVGDVVAGVVQSVKPYGAFIDLGGVTGLLHVSQLSHDRVLVLDKILAEGDKIKVM 362
Query: 318 L 318
+
Sbjct: 363 I 363
>gi|159472705|ref|XP_001694485.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
gi|40641370|emb|CAE51165.1| ribosomal protein S1 homologue [Chlamydomonas reinhardtii]
gi|158276709|gb|EDP02480.1| plastid ribosomal protein S1 [Chlamydomonas reinhardtii]
Length = 436
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 148/241 (61%), Gaps = 7/241 (2%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LE D+ ++G KV GTV D+ GA V+I AK+ A+ P E ++K EA
Sbjct: 125 EEVEEMLEAVDYEFKVGDKVSGTVIEVDDDGAYVEIGAKAIAFCPVTECSFARLKTPLEA 184
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ PG+K +F+++ + E +++SL ++ W+R RQLQ ED+ V V NKGG+
Sbjct: 185 -LRPGMKRDFMVVEDEEEYGQVIVSLAAMEATTFWQRIRQLQEEDITVTVSVESVNKGGM 243
Query: 204 VAEVEGLRGFVPFSQISSKSTA---EELLGKDLPLKFVEVDEEQSRLVLSNRKA---MAD 257
+ + GF+P SQ T E L+G +L +KF+EVDEE RLV S+++A +++
Sbjct: 244 LVKFGIYDGFIPVSQFGPSITPDNMESLVGFELQVKFLEVDEEAERLVFSHKRASSTVSN 303
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+G VV G VQS+KPYGAFID+GG+ GLLHVSQISHDRV + +LQ GD +KV
Sbjct: 304 DIQGFKVGDVVAGVVQSVKPYGAFIDLGGVTGLLHVSQISHDRVLVLDKILQEGDKIKVM 363
Query: 318 L 318
+
Sbjct: 364 I 364
>gi|428206841|ref|YP_007091194.1| 30S ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
gi|428008762|gb|AFY87325.1| SSU ribosomal protein S1P [Chroococcidiopsis thermalis PCC 7203]
Length = 300
Score = 187 bits (475), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 149/238 (62%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+E+F ALE++D+ + G V+G VF D+ GA VDI KS+A+LP +A + ++ +
Sbjct: 16 MEDFAKALEQHDYQFQKGQTVRGKVFQYDSNGAYVDIGGKSAAFLPADQASLQQVTDL-- 73
Query: 143 AGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ ++P +E EF+II + +AD + LS R ++ + WER Q+Q V+ +V GANKG
Sbjct: 74 STVLPLQEELEFLIIRDQDADGQVTLSRRQLEIQHIWERIEQMQENRQTVQVRVTGANKG 133
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQA 260
GV +V GLRGF+P S + K E L G++L F+EVD + +LVLSNR A A S +
Sbjct: 134 GVTVDVLGLRGFIPRSHLVEKENMESLKGQNLTASFLEVDYDNKKLVLSNRLATRASSFS 193
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL IG + G V S++P+G F+D+ G++GLLH+ Q+S + A + + + G +K +
Sbjct: 194 QLEIGQLATGKVSSIQPFGVFVDLNGVSGLLHIKQVSQNYTASLPALFKIGQEIKAVI 251
>gi|359457620|ref|ZP_09246183.1| 30S ribosomal protein S1 [Acaryochloris sp. CCMEE 5410]
Length = 289
Score = 187 bits (474), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 158/242 (65%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF+ ++F AL ++D++ E+G V+G D+ GA +DI K++A+LP+QEA + K
Sbjct: 1 MSFSADDFAKALSQHDYSFEVGQTVQGKTVNYDSDGAYIDIGGKATAFLPSQEASLRKQF 60
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+EE IVP +E EF+II +A+ + LS+R ++ + W + +LQS+ V+ + G
Sbjct: 61 SLEE--IVPLDEEREFLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITG 118
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGV A+VEGLRGF+P S + + E +G L + F+EVD E+ +LVLSNR A
Sbjct: 119 VNKGGVTADVEGLRGFIPRSHLLDRDNLEGQIGSQLTVTFLEVDPERKKLVLSNRMAEQS 178
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S+ +L IG +V GTV LKP+GAFI + G+ GLLH+ ++S + V ++++VL+ G+ +K
Sbjct: 179 SRIGELEIGQLVSGTVSDLKPFGAFIKLDGLTGLLHIKEVSQNFVPNLSSVLKIGEPIKA 238
Query: 317 CL 318
+
Sbjct: 239 IV 240
>gi|443311120|ref|ZP_21040754.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
gi|442778868|gb|ELR89127.1| ribosomal protein S1 [Synechocystis sp. PCC 7509]
Length = 299
Score = 186 bits (472), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/241 (38%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F ALE+ DF + G +KG VF +N GA VDI KS+A++PT+E + +
Sbjct: 14 AFSMDDFAKALEQQDFQFQNGQTIKGKVFQYENNGAYVDIGGKSAAFIPTEEVSLRPVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E+ +P +E EFVII E +AD + +S R ++ + W+R +Q ++ +V G
Sbjct: 74 LSES--LPLQEELEFVIIKEQDADGQVTVSRRQLEVQQIWQRLTDMQENSQTLQVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV +V+G+RGF+P S + + + L G+ L F+EVD ++LVLSNR A +
Sbjct: 132 NKGGVTVDVQGVRGFIPRSHLLERDNLDSLKGQTLSASFLEVDLSNNKLVLSNRLATRSA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S +QL IG +V G + +KP+G F+D+ G++GLLH+ QIS + + T+ QPG +K
Sbjct: 192 SFSQLEIGQLVEGKITGIKPFGMFVDLQGVSGLLHIKQISQKFIESLTTLFQPGQIIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|32307552|gb|AAP79181.1| ribosomal protein rpS1 [Bigelowiella natans]
Length = 419
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 107/247 (43%), Positives = 157/247 (63%), Gaps = 5/247 (2%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNS-ELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEA 132
P V ++F + LE+ S + T V GTV D++G A VD+ AKS AYLP E
Sbjct: 105 PESDVMGLYKDFDNLLEENKLPSFDALTTVTGTVISLDSKGGAYVDVGAKSLAYLPRGEI 164
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+ +K E + PGLK +F + + +VLS++ + AW R RQ+ DV +
Sbjct: 165 SMGGMK--AEDVLFPGLKRDFTVSKASTMASDVVLSIKRMLIPTAWTRVRQMAELDVTLS 222
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
GK++ N+GG + EV+ L+GF+PFSQ+++ +E++GK +P+KF+EVD E RLV+SNR
Sbjct: 223 GKILSHNRGGFIIEVDSLQGFLPFSQMATSVDKDEMIGKVIPVKFLEVDMENQRLVMSNR 282
Query: 253 KAMADS-QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+A+A S + +G VV+GTV +LKPYGAFI++GG+NGLLH+SQISHD V + V+ G
Sbjct: 283 RAVASSFKKNYKVGDVVVGTVTALKPYGAFINLGGVNGLLHISQISHDHVTSVKDVMDVG 342
Query: 312 DTLKVCL 318
LKV +
Sbjct: 343 QKLKVMI 349
>gi|443319276|ref|ZP_21048510.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
gi|442781103|gb|ELR91209.1| ribosomal protein S1 [Leptolyngbya sp. PCC 6406]
Length = 291
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 158/243 (65%), Gaps = 6/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
++F+ ++F AL +D+N + G+ VKGTV + GA V+I KS A++P +EA + K +
Sbjct: 1 MTFSTDDFARALAAHDYNFQAGSVVKGTVIGHGSEGAYVEIGGKSDAFVPLKEASLGKAE 60
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+EE ++P E EF+II E + + ++LS+R + + WE+ Q QS+ +++ +V G
Sbjct: 61 ALEE--LLPLQSEWEFMIIREQDNEGRVLLSIRRLLVQQLWEKLTQQQSDGILISTRVTG 118
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGV+ +VEGLRGFVP S +S E L+G L + F+EVD E+++LVLS + A A
Sbjct: 119 INKGGVIVDVEGLRGFVPRSHLSHPEDLEALVGTTLTVGFLEVDPERNKLVLSAKIA-AR 177
Query: 258 SQA--QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
SQA QL +G +V GTV SLKPYGAF++ G+ GLLHV+QIS + V + VL+ LK
Sbjct: 178 SQAMGQLEVGQLVTGTVVSLKPYGAFVEFEGVTGLLHVNQISKNYVDSLPNVLKLDQPLK 237
Query: 316 VCL 318
+
Sbjct: 238 AIV 240
>gi|158334623|ref|YP_001515795.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
gi|158304864|gb|ABW26481.1| 30S ribosomal protein S1 [Acaryochloris marina MBIC11017]
Length = 289
Score = 185 bits (469), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 157/242 (64%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF+ ++F AL ++D++ E+G V+G D+ GA +DI K++A+LP+QEA + K
Sbjct: 1 MSFSADDFAKALSQHDYSFEVGQTVQGKTVNYDSDGAYIDIGGKATAFLPSQEASLRKQF 60
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+EE IVP +E EF+II +A+ + LS+R ++ + W + +LQS+ V+ + G
Sbjct: 61 SLEE--IVPLDEEREFLIIKGQDANGQVTLSIRRLELKHLWTKLLELQSQSQSVQVTITG 118
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGV A+VEGLRGF+P S + + E +G L + F+EVD ++ +LVLSNR A
Sbjct: 119 VNKGGVTADVEGLRGFIPRSHLLDRDNLEGQIGSQLTVTFLEVDPDRKKLVLSNRMAEQS 178
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S+ +L IG +V GTV LKP+GAFI + G+ GLLH+ ++S + V +++ VL+ G+ +K
Sbjct: 179 SRIGELEIGQLVSGTVSDLKPFGAFIKLDGLTGLLHIKEVSQNFVPNLSAVLKIGEPIKA 238
Query: 317 CL 318
+
Sbjct: 239 IV 240
>gi|298708733|emb|CBJ30695.1| Plastid ribosomal protein S1 [Ectocarpus siliculosus]
Length = 441
Score = 184 bits (467), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 154/236 (65%), Gaps = 3/236 (1%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E+F + L + E G VKGTV + GAL+DI AK++AY+P +EA + +++ +E
Sbjct: 107 EDFQTLLTDNKVSFERGEIVKGTVIQFEPSGALIDIGAKATAYMPAREASLDEVESMEGL 166
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ + +I ENE + +S+R IQYE AW + +Q+EDVV +G ++ N+GG
Sbjct: 167 LELDETMDVMIISDENEMG-QVQVSIRRIQYEKAWSKVEDMQAEDVVFEGPIIAVNRGGA 225
Query: 204 VAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-QL 262
+ VEGLRGF+P S + E+ +GK + KF+EV+ E S+LV+SNR+A+ + + +L
Sbjct: 226 IVLVEGLRGFLPGSHMCGGLPTEDAVGKVMKYKFLEVNAENSKLVVSNRRAVLEQEMKEL 285
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V+++KPYGAF++I G++GLLH+SQIS DR+ D+ +++Q G LK C+
Sbjct: 286 SRGDVVEGHVKAIKPYGAFVEIRGMSGLLHISQISFDRIEDLPSIMQMGMKLK-CM 340
>gi|428213063|ref|YP_007086207.1| 30S ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
gi|428001444|gb|AFY82287.1| ribosomal protein S1 [Oscillatoria acuminata PCC 6304]
Length = 336
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 149/241 (61%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF+ E+F ALE+ D++ G KV+G F + GA +DI KS+A+LP EA + + +
Sbjct: 46 SFSAEDFAKALEQQDYDFRKGQKVRGKAFEYVSEGAYIDIGGKSAAFLPLAEASVKPVSN 105
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E IVP +E +F+I+ E + + +S+R ++ WE Q+Q + V +V+G
Sbjct: 106 LAE--IVPIDEERDFLIVSEPNDEGQVKVSIRQMELRKVWEHLAQVQENNESVPVRVIGV 163
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR-KAMAD 257
NKGGV VEGLRGF+P S +S + E+L+G++L +E D ++++LVLS R +A A
Sbjct: 164 NKGGVTVNVEGLRGFIPRSHLSERGNLEQLIGQNLSATILEADRDRNKLVLSQRLQARAK 223
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
QL +G +V G V LKP+G F+D+ G+ GLLH++QIS VA + TV Q G +KV
Sbjct: 224 RMGQLVVGQLVEGEVVGLKPFGVFVDLNGVTGLLHINQISQKYVASLQTVFQVGQPIKVV 283
Query: 318 L 318
+
Sbjct: 284 I 284
>gi|428223760|ref|YP_007107857.1| 30S ribosomal protein S1P [Geitlerinema sp. PCC 7407]
gi|427983661|gb|AFY64805.1| SSU ribosomal protein S1P [Geitlerinema sp. PCC 7407]
Length = 302
Score = 184 bits (467), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 151/241 (62%), Gaps = 6/241 (2%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F++++F ALE +D+ E G V+GTVF D+ GA VDI K++A++P +EA + +
Sbjct: 15 FSMDDFAKALESHDYQFESGQIVRGTVFEYDSSGAYVDIGGKAAAFVPAREASLSSRVDL 74
Query: 141 EEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ A +P L E +F+II AD + LS+R ++ WER ++Q+ + + +V G
Sbjct: 75 QTA--LP-LNEARDFLIISNQNADGQVTLSVRRLELNRVWERLAEMQTNNETIAVRVSGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMAD 257
NKGGV A+ +GLRGF+P SQ+ + + L+GK L +K +EV+ E ++LVLS+R+ A A
Sbjct: 132 NKGGVTADAQGLRGFIPRSQLVEREDLDSLIGKTLTVKLLEVNRETNKLVLSHRQAAQAA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S Q IG +V G V SLKP+G F+D+GG GLLH+ QIS + ++ + G +KV
Sbjct: 192 SIGQFEIGQLVEGKVVSLKPFGLFVDLGGTTGLLHIKQISQNYISSLQAHFSVGQAIKVV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|428221436|ref|YP_007105606.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7502]
gi|427994776|gb|AFY73471.1| ribosomal protein S1 [Synechococcus sp. PCC 7502]
Length = 300
Score = 184 bits (466), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 152/243 (62%), Gaps = 4/243 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK--I 137
SF++ +F AL +D+ ++G VKG V ++RG+ +DI KS +LP EA I
Sbjct: 9 SFSMSDFADALVAHDYEFKVGQIVKGKVIAHESRGSYIDIGGKSPGFLPIDEATTKASGI 68
Query: 138 KHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
+ A ++P EF+II + +AD + LS+R+++ + AW + LQ+E +V+
Sbjct: 69 SASDLAELLPIDSDREFMIISDQDADGEVKLSIRLLKIKQAWLNLQDLQAEGKAFNCRVI 128
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM- 255
NKGGVVA+V+G+RGF+P S + K +L+GK L + VE+D+ +++LVLSN +A+
Sbjct: 129 NVNKGGVVADVQGIRGFIPRSHLVDKVNMNDLVGKTLSVVLVELDQTRNKLVLSNTQAVK 188
Query: 256 ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
A + +QL G +V GTV SL+P+GAFID GG+ GLLH+ +IS + D+ +V G+ +K
Sbjct: 189 ASAMSQLSKGQLVTGTVTSLRPFGAFIDFGGVTGLLHIKEISQKYIGDVNSVFAIGEPIK 248
Query: 316 VCL 318
+
Sbjct: 249 AVI 251
>gi|117662841|gb|ABK55725.1| chloroplast ribosomal protein S1 [Cucumis sativus]
Length = 99
Score = 180 bits (457), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 92/99 (92%), Positives = 94/99 (94%)
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLV 248
VVVKGKVV ANKGGVVA VEGLRGFVPFSQIS+KS AEELL K+LPLKFVEVDEEQSRLV
Sbjct: 1 VVVKGKVVDANKGGVVAVVEGLRGFVPFSQISTKSNAEELLSKELPLKFVEVDEEQSRLV 60
Query: 249 LSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGI 287
LSNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGI
Sbjct: 61 LSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGI 99
>gi|449017516|dbj|BAM80918.1| chloroplast ribosomal protein S1 precursor [Cyanidioschyzon merolae
strain 10D]
Length = 447
Score = 180 bits (456), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 95/246 (38%), Positives = 152/246 (61%), Gaps = 12/246 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
+E A++ + EL VKG V + RGAL+D+ AK++AYLP E + ++ EE
Sbjct: 103 KELDQAVQNLSYKYELNMIVKGRVVHFEPRGALIDVGAKTAAYLPLSEVAMDRVSSPEEV 162
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G + +F II + + L +S++ I++ WE+ +Q + D VV+ +VV N+GG
Sbjct: 163 LKI-GEERDFQIIATEDTEGQLRVSIKRIEFTRTWEKLQQALANDEVVQCEVVAVNRGGA 221
Query: 204 VAEVEGLRGFVPFSQI----------SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
++ LRGF+P S I S E+L+GK+LP+K +EVD E+SRLV+S+R+
Sbjct: 222 SVRIDCLRGFLPASHIVLVPGFIPGLPSDPRLEDLMGKELPVKLLEVDPEKSRLVVSHRR 281
Query: 254 AMAD-SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
A+A+ S + G+++ GTV+ +KPYG FI+ GG++GLLH+SQISH+ V D+ +V GD
Sbjct: 282 ALAEKSLKNVETGTILEGTVRGIKPYGVFIESGGVSGLLHISQISHEHVEDLTSVFTLGD 341
Query: 313 TLKVCL 318
+K +
Sbjct: 342 KVKALV 347
>gi|254424219|ref|ZP_05037937.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
gi|196191708|gb|EDX86672.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
Length = 206
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/181 (47%), Positives = 126/181 (69%), Gaps = 1/181 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FT ++F + L++YD+N G V GTVF + RGAL+DI AK++AYLP QE I++++
Sbjct: 11 IGFTHDDFAALLDQYDYNFNPGDIVPGTVFSIEPRGALIDIGAKTAAYLPIQEMSINRVE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE +E F++ +NE D L LS+R I+Y AWER RQLQ ED V+ V
Sbjct: 71 GAEEVLQSNETREFFILTDDNE-DGQLTLSIRRIEYMRAWERVRQLQQEDATVRSLVFAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 130 NRGGALVRIEGLRGFIPGSHISTRKPKEDLVGEELPLKFLEVDEERNRLVLSHRRALVER 189
Query: 259 Q 259
+
Sbjct: 190 K 190
>gi|75909936|ref|YP_324232.1| 30S ribosomal protein S1 [Anabaena variabilis ATCC 29413]
gi|75703661|gb|ABA23337.1| SSU ribosomal protein S1P [Anabaena variabilis ATCC 29413]
Length = 302
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 139/241 (57%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALE +D+ + G V G VF D GA VDI KSSAY+P EA + +
Sbjct: 14 SFTMDDFAKALENHDYQFQKGQVVYGKVFQLDPDGAYVDIGGKSSAYIPRDEASLRAVND 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ A ++P +E EF+II E +A+ + LS R ++ WE+ Q++ V KV G
Sbjct: 74 L--AAVLPLHEELEFIIIREQDAEGQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV +V+ LRGF+P S ++ + E L G L F+EVD +LVLS R S
Sbjct: 132 NKGGVTVDVQSLRGFIPRSHLTERDNLEALKGHTLTAGFLEVDRNNKKLVLSQRLVTRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
QL IG +V G + +KP+G F+D+ G++ LLH+ Q+S + + V QPG T+K
Sbjct: 192 NFNQLEIGQLVEGKITGIKPFGVFVDLNGLSALLHIKQVSQKFIESLEKVFQPGQTIKAI 251
Query: 318 L 318
+
Sbjct: 252 V 252
>gi|427730177|ref|YP_007076414.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7524]
gi|427366096|gb|AFY48817.1| ribosomal protein S1 [Nostoc sp. PCC 7524]
Length = 301
Score = 178 bits (451), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALEK+D+ + G V G VF D GA VDI KSSAY+P EA + +
Sbjct: 14 SFTMDDFAKALEKHDYQFQKGQVVYGKVFQLDPDGAYVDIGGKSSAYIPRDEASLRTVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+II E +A+ + LS R ++ + W++ Q+Q V+ +V G
Sbjct: 74 LSE--VLPLHEELEFLIIREQDAEGQVTLSRRQLEIQHIWDKLAQMQENSQTVEVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV +++ LRGF+P S ++ + E L GK+L + +EVD +L+LS R A S
Sbjct: 132 NKGGVTVDLQSLRGFIPRSHLAERDNLEALKGKNLTVALLEVDRNNKKLILSQRLATRSS 191
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
L IG +V G V +KP+G F+DI GI+ LLH+ QIS + I V Q G +K
Sbjct: 192 NLNLLEIGQLVEGKVTGIKPFGVFVDIDGISALLHIKQISQKFIDSIEKVFQVGQQIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|17228573|ref|NP_485121.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
gi|17130424|dbj|BAB73035.1| 30S ribosomal protein S1 [Nostoc sp. PCC 7120]
Length = 305
Score = 177 bits (450), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 95/241 (39%), Positives = 139/241 (57%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALE +D+ + G V G VF D GA VDI KSSAY+P EA + +
Sbjct: 14 SFTMDDFAKALENHDYQFQKGQVVYGKVFQLDPDGAYVDIGGKSSAYIPRDEASLRAVND 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ A ++P +E EF+II E +A+ + LS R ++ WE+ Q++ V KV G
Sbjct: 74 L--AAVLPLHEELEFIIIREQDAEGQVTLSRRQLEINHIWEKLAQMKENSQPVDVKVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV +V+ LRGF+P S ++ + E L G L F+EVD +LVLS R S
Sbjct: 132 NKGGVTVDVQSLRGFIPRSHLTERDNLEALKGHTLTAGFLEVDRNNKKLVLSQRLVTRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
QL IG +V G + +KP+G F+D+ G++ LLH+ Q+S + + V QPG T+K
Sbjct: 192 NFNQLEIGQLVEGKITGIKPFGVFVDLNGLSALLHIKQVSQKFIESLEKVFQPGQTIKAI 251
Query: 318 L 318
+
Sbjct: 252 V 252
>gi|254424866|ref|ZP_05038584.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
gi|196192355|gb|EDX87319.1| S1 RNA binding domain protein [Synechococcus sp. PCC 7335]
Length = 304
Score = 177 bits (448), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 153/241 (63%), Gaps = 5/241 (2%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F+ E+F ALE+ D+ G+ + G V ++ GA VDI KS+A+LPT+EA I +
Sbjct: 15 FSAEDFAKALEQQDYQFSRGSVITGKVETHESDGAYVDIGGKSAAFLPTKEASIDSDILL 74
Query: 141 EEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
EE I+P G + +F+II + +A+ LV+S+R ++ + WER R+ Q V++ + G+N
Sbjct: 75 EE--ILPIGTERKFLIIRDQDANGQLVISIRAMEIKELWERLRERQENGDVLEVTISGSN 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNR-KAMAD 257
KGGV A+V GLR F+P S ++ + + L+G + F+EVDEE+++L+LS R A A
Sbjct: 133 KGGVTADVSGLRAFIPRSHLARRVEDLDTLMGATINAAFLEVDEEKNKLLLSERIAARAT 192
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ + L G ++ GT+ SLKP+GAF+D GG +GLLH+ QIS ++ + V + GD +K
Sbjct: 193 AMSSLTKGELIEGTIASLKPFGAFVDFGGASGLLHIKQISKSYISALGDVFKVGDPIKAV 252
Query: 318 L 318
+
Sbjct: 253 V 253
>gi|218245301|ref|YP_002370672.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 8801]
gi|257058336|ref|YP_003136224.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 8802]
gi|218165779|gb|ACK64516.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8801]
gi|256588502|gb|ACU99388.1| RNA binding S1 domain protein [Cyanothece sp. PCC 8802]
Length = 302
Score = 176 bits (447), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 154/242 (63%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF++++F AL+++D+ E G V+GTV + GA VDI KSS ++P +EA +
Sbjct: 13 ISFSMDDFAKALDQHDYTFEKGQVVRGTVVQHTSDGAYVDIGGKSSGFVPLREASLDSTP 72
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E ++P +E EF+II + ++ + LS R +Q + AWE+ ++ V+ +V+G
Sbjct: 73 NLAE--VLPLNEEAEFLIISDQNSEGQVKLSCRQLQLQQAWEKVAEIAETGKTVQMRVIG 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
NKGGV+ +VEGLRGF+P S + K + L+G+ L F+EV+ + ++LVLS R+ MA
Sbjct: 131 TNKGGVIGDVEGLRGFIPRSHLLEKDNLDALVGQLLTANFLEVNPDDNKLVLSQRRVIMA 190
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ G+++ G V ++PYG F+D+ G+ GLLH++QIS R+ D+ T+ + G ++V
Sbjct: 191 AQMDKITAGNLITGKVAKIQPYGIFVDLNGVTGLLHITQISGLRIDDLNTLFKFGQEIQV 250
Query: 317 CL 318
+
Sbjct: 251 MI 252
>gi|434398471|ref|YP_007132475.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
gi|428269568|gb|AFZ35509.1| RNA binding S1 domain protein [Stanieria cyanosphaera PCC 7437]
Length = 296
Score = 176 bits (447), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALE+YD+ G +KGTV ++ GA VDI KS A++PT+EA + I +
Sbjct: 10 SFSMDDFAKALEQYDYEFSKGKVIKGTVVQYESEGAYVDIGGKSPAFVPTREAALGTIDN 69
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+II E + + LS R +Q + AW+ ++ V+ ++ G
Sbjct: 70 LAE--VLPLNQELEFLIIREQNDEGQVTLSRRQLQLQAAWDNVAEIAESGKSVQVRITGV 127
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV E+EGLRGF+P S + + + L+G+ L F+EV+ + +LVLS R A+ A
Sbjct: 128 NKGGVTGEIEGLRGFIPRSHLEQRDNLDSLVGQLLTATFLEVNPDDKKLVLSQRGAIQAK 187
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ A++ G++V G + SLKPYG F+D+ G GLLH+ ++S+ + + T+ + G +KV
Sbjct: 188 AMAKVEQGTLVEGKIVSLKPYGVFVDLDGATGLLHIKEVSNTHINSLTTIFKIGQIIKVV 247
Query: 318 L 318
+
Sbjct: 248 I 248
>gi|411116936|ref|ZP_11389423.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
gi|410713039|gb|EKQ70540.1| ribosomal protein S1 [Oscillatoriales cyanobacterium JSC-12]
Length = 300
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/241 (37%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F ALE +D+ + G V+G V D G VDI AKS A++P QE I +K
Sbjct: 13 TFSMDDFAKALEGFDYEFQKGQIVRGKVVSYDTNGVYVDIGAKSLAFVPEQEVSIKGVKE 72
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ + ++P +E EF+I+ E +AD + LSLR ++ AW+R +++ + + +V G
Sbjct: 73 L--SAVLPQDEEAEFLIVREQDADGQVTLSLRQLEIRKAWDRLAEIRDSNQSLTVRVTGT 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV +V+G+RGF+P S + + E L+ L +E+++E +LVLSNR A
Sbjct: 131 NKGGVTVDVQGVRGFIPRSHLVERDNLEALVKTTLTATIIELNQEMGKLVLSNRLASRSV 190
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+QL IG +V GTV +KP+G F+D+ G +GLLH++QIS + +A V Q G +K
Sbjct: 191 VFSQLEIGQLVEGTVSGIKPFGVFVDMNGTSGLLHINQISQKYIESLAKVFQVGQPIKAM 250
Query: 318 L 318
+
Sbjct: 251 I 251
>gi|427706259|ref|YP_007048636.1| 30S ribosomal protein S1P [Nostoc sp. PCC 7107]
gi|427358764|gb|AFY41486.1| SSU ribosomal protein S1P [Nostoc sp. PCC 7107]
Length = 300
Score = 174 bits (441), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALEK+D+ + G V G VF D GA VDI K+SAY+P EA + +
Sbjct: 14 SFTMDDFAQALEKHDYQFQKGQVVHGKVFQLDPDGAYVDIGGKASAYIPRDEASLRAVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+II E +A+ + LS R ++ + WE+ Q+Q ++ +V G
Sbjct: 74 LSE--VLPLQEELEFLIIREQDAEGQVTLSRRQLEIQHIWEKLVQMQENSQTIQVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV + + LRGF+P S ++ + E L G L F+EVD +LVLS R A S
Sbjct: 132 NKGGVTVDFQSLRGFIPRSHLAERDNLEALKGHTLTAGFLEVDRNSKKLVLSQRLATRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L IG +V G + +KP+G F+D+ G++ LLH+ Q+S + + V Q G T+K
Sbjct: 192 NFSLLEIGQLVEGKITGIKPFGVFVDLNGMSALLHIKQVSQKFIESLEKVFQVGQTIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|428300040|ref|YP_007138346.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 6303]
gi|428236584|gb|AFZ02374.1| RNA binding S1 domain protein [Calothrix sp. PCC 6303]
Length = 300
Score = 174 bits (441), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 94/242 (38%), Positives = 143/242 (59%), Gaps = 6/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALE++D+ + G V G VF D+ GA VDI K+SA+LP EA + +
Sbjct: 14 SFTMDDFAKALEQHDYQFQKGQTVHGKVFQIDHDGAYVDIGGKASAFLPRDEASLRTVTD 73
Query: 140 VEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E I+P L+E EF+II E +A+ + LS R ++ WE+ Q+Q V+ KV G
Sbjct: 74 LSE--ILP-LQEKLEFIIIREQDAEGQVTLSRRQLEIRHIWEKLIQMQEASQTVQAKVTG 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGV EV GLRGF+P S +S + E L G+ L F+E+D R+VLS R A
Sbjct: 131 VNKGGVNVEVFGLRGFIPRSHLSERDNLESLKGQTLTTSFLEIDPNTKRMVLSQRLASRS 190
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + L IG +V G V +K +G F+++ G++ LLH+ Q++ + ++ V Q G +K
Sbjct: 191 ANFSMLEIGQLVEGKVTGIKAFGVFVELDGVSALLHIKQVTQKYIDNLEKVFQVGQQIKA 250
Query: 317 CL 318
+
Sbjct: 251 VI 252
>gi|427734242|ref|YP_007053786.1| 30S ribosomal protein S1 [Rivularia sp. PCC 7116]
gi|427369283|gb|AFY53239.1| ribosomal protein S1 [Rivularia sp. PCC 7116]
Length = 304
Score = 173 bits (439), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 92/241 (38%), Positives = 147/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F +ALEK+D+ + G VKG VF D GA VDI KSSA++P EA + ++
Sbjct: 14 SFTMDDFAAALEKHDYQFQKGQVVKGKVFQIDPDGAYVDIGGKSSAFIPRHEAALREVID 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+I+ E A+ + +S R ++ WE+ ++Q V +V+ A
Sbjct: 74 LSE--VLPLHEELEFLIVQEQNAEGQVTISRRQLEMRQIWEKLLEMQETTKSVDVQVMNA 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD- 257
NKGGV ++ GLRGF+P S + ++ E L G+ L + F+EV+ + ++LVLS R A +
Sbjct: 132 NKGGVTVDLLGLRGFIPRSHLLERNNLEALKGQKLTVSFLEVNRDTNKLVLSQRLAKSSA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S + L IG +V G + +KP+G F+DI G++ LLH+ QIS + + V QP +K
Sbjct: 192 SFSLLEIGQLVEGKITGIKPFGVFVDINGVSALLHIKQISQKFIESLEKVFQPSQEIKAL 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|354567671|ref|ZP_08986839.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
gi|353542129|gb|EHC11593.1| RNA binding S1 domain protein [Fischerella sp. JSC-11]
Length = 300
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF+L++F ALEK+D+ + G V G VF D GA VDI KSSA++P +EA + +
Sbjct: 14 SFSLDDFAKALEKHDYQFQKGQVVHGKVFQLDPDGAYVDIGGKSSAFIPREEAALRNVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+II E +A+ + LS R ++ + WER Q++ V+ +V+
Sbjct: 74 LSE--VLPLNEELEFLIIREQDAEGQVTLSRRQLEIKHIWERLAQMRENSQTVEVRVLNV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV +++GLRGF+P S + + E L G+ L + F+E+D +L+LS R A +
Sbjct: 132 NKGGVTVDLQGLRGFIPRSHLLERDNLESLKGQTLTVSFLEIDRNNKKLILSQRLATRSA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S + +G +V G + ++P+G F+DI G++ LLH+ QI+ + ++ V Q G ++K
Sbjct: 192 SFSTFELGQLVEGKISGIRPFGVFVDIDGVSALLHIKQITQKFIDNLEKVFQVGQSIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|425438129|ref|ZP_18818538.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
gi|389676730|emb|CCH94262.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9432]
Length = 293
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 148/241 (61%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + +
Sbjct: 6 AFSMDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVTS 65
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EA +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G
Sbjct: 66 IPEA--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGV 123
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMAD 257
NKGGV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A+
Sbjct: 124 NKGGVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARAN 183
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V
Sbjct: 184 AISQLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVV 243
Query: 318 L 318
+
Sbjct: 244 V 244
>gi|414076582|ref|YP_006995900.1| 30S ribosomal protein S1 [Anabaena sp. 90]
gi|413969998|gb|AFW94087.1| ribosomal protein S1 [Anabaena sp. 90]
Length = 300
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V+G +F D+ GA VDI KSSA+LP +EA + +
Sbjct: 14 SFSMDDFAKALEKHDYQFQKGQVVRGKIFQVDHDGAYVDIGGKSSAFLPQEEASLRAVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E I+P +E EF+II + +A+ + +S + ++ WE+ ++Q V+ +V G
Sbjct: 74 LSE--ILPMDEELEFLIIRDQDAEGQVTISRKQLEMRQIWEKLAEIQENSQTVQVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV ++ GLRGF+P S +S + + L G+ L + F+E++ E ++LVLS R A S
Sbjct: 132 NKGGVTVDLFGLRGFIPRSHLSERDNLDALKGQSLTVGFLEINRETNKLVLSQRLAARSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L IG ++ G + +KP+G F+D G++ LLH+ Q+S + + V Q G +K
Sbjct: 192 NFSLLEIGQLIEGKITGIKPFGVFVDFNGVSALLHIKQVSQKFIESLDKVFQIGQPIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|452821105|gb|EME28139.1| 30S ribosomal protein S1 (plastid) [Galdieria sulphuraria]
Length = 523
Score = 171 bits (434), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 94/228 (41%), Positives = 148/228 (64%), Gaps = 6/228 (2%)
Query: 93 YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEE 152
Y F + G KG + N GALVDI AKS+A LP+ E ++ ++ + + V G ++E
Sbjct: 189 YSFTA--GDVRKGVIVEIINGGALVDIGAKSTALLPSNEVSLYPVESIRDVLQV-GDEKE 245
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
FV++ + +S+R ++ E+AW++ E V+ +VV N+GG + V G+RG
Sbjct: 246 FVLLVADSDSGHPKVSIRRLELEIAWKKLNSALDEASTVEAQVVAVNRGGCLVLVYGIRG 305
Query: 213 FVPFSQISSKSTA-EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIG 270
F+P S IS T+ EE++G P+K +EVD+ + RLV+S+R+AMA+ Q + L G++V G
Sbjct: 306 FLPISHISLPGTSLEEMVGHKYPVKCLEVDKSKGRLVVSHRRAMAERQMEHLKTGALVEG 365
Query: 271 TVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
TVQ +KPYG F+D+ G +GLLH+SQISHD+VA+I ++ PG+ +K C+
Sbjct: 366 TVQGVKPYGVFVDVFGTSGLLHISQISHDQVANIQSLFLPGEKVK-CM 412
>gi|443669233|ref|ZP_21134468.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
gi|159026257|emb|CAO86406.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
gi|443330475|gb|ELS45188.1| S1 RNA binding domain protein [Microcystis aeruginosa DIANCHI905]
Length = 293
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 148/241 (61%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + +
Sbjct: 6 AFSMDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVIS 65
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EA +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G
Sbjct: 66 IAEA--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGV 123
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMAD 257
NKGGV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A+
Sbjct: 124 NKGGVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARAN 183
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V
Sbjct: 184 AISQLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVV 243
Query: 318 L 318
+
Sbjct: 244 V 244
>gi|308801060|ref|XP_003075311.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
gi|116061865|emb|CAL52583.1| 30S ribosomal protein S1 (ISS) [Ostreococcus tauri]
Length = 250
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 87/193 (45%), Positives = 128/193 (66%), Gaps = 12/193 (6%)
Query: 128 PTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE 187
PTQ A + + + +F +I ++ + L LS+R ++ AW+RCR+ Q+E
Sbjct: 7 PTQAASVFDVDS----------EYDFEVIQDDNGEGCLTLSVRRMELAKAWDRCREAQAE 56
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKS-TAEELLGKDLPLKFVEVDEEQSR 246
D + G+V+ N+GG++ EVE LRGFVP S I ++ EEL+G+ LP KF+EVDEE++R
Sbjct: 57 DAALTGEVLSVNRGGLLVEVEKLRGFVPQSHIGIRTLNREELVGQQLPFKFIEVDEEKNR 116
Query: 247 LVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
LVLS+R A A+ L +G VV G VQ++KPYGAF+D+GG +GLLH+SQISH+R+ +
Sbjct: 117 LVLSHRLATDMVSAEGLEVGDVVEGMVQAVKPYGAFVDVGGQSGLLHISQISHERIVAVE 176
Query: 306 TVLQPGDTLKVCL 318
VL GD +KV +
Sbjct: 177 NVLSAGDRIKVLV 189
>gi|425456073|ref|ZP_18835784.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
gi|389802925|emb|CCI18094.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9807]
Length = 285
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 146/238 (61%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI AKSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGAKSSAFIPLREISLENVTSIPE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|295293739|gb|ADF88266.1| RNA-binding S1 domain-containing protein [Aphanizomenon sp. 10E6]
Length = 300
Score = 169 bits (428), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 147/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V+G VF D+ GA VDI KSSA+LP +EA + +
Sbjct: 14 SFSMDDFAKALEKHDYQFQKGQVVRGKVFQVDHDGAYVDIGGKSSAFLPQEEASLRAVAD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P +E EF+II + +A+ + +S + ++ + WE+ ++Q V+ +V G
Sbjct: 74 LSE--VLPMNEELEFLIIRDQDAEGQVTISRKQLEVKQIWEKLLEMQENSQSVQVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV ++ G+RGF+P S I+ + E L G+ L + F+E++ E ++LVLS R A S
Sbjct: 132 NKGGVTVDLLGVRGFIPRSHIAERDNLEALKGQTLTVGFLEINRETNKLVLSQRLAARSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L IG ++ G + +KP+G F+D G++ LLH+ Q+S + + + Q G +K
Sbjct: 192 NFSLLEIGQLIEGKITGIKPFGVFVDFNGVSALLHIKQVSQKFIDSLEKIFQIGQPIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|425442739|ref|ZP_18822976.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
gi|389716148|emb|CCH99589.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9717]
Length = 285
Score = 169 bits (427), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 89/238 (37%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G +KV +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVV 236
>gi|307154019|ref|YP_003889403.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7822]
gi|306984247|gb|ADN16128.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7822]
Length = 300
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 150/241 (62%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALE+YD+ E G V+G V + GA V+I KS ++P +EA I + +
Sbjct: 14 SFTMDDFAHALEQYDYTFEKGQVVRGKVIQYTSDGAYVEIGGKSPGFVPLKEASIQPVTN 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E +P +E +F+II +A+ L++S R + + AW+ +++ V+ +V G
Sbjct: 74 LNEC--LPLQQEQDFLIISGPDAEGQLIISRRQLAIKQAWDTVKEISESGQSVQVRVTGT 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
N+GGV AEVEGLR F+P S + K + L+G+ + F+++D++ ++LVLS R+ + A
Sbjct: 132 NRGGVTAEVEGLRAFIPRSHLVEKEDLDSLVGQLITANFIQIDQDSNKLVLSQRQLVRAA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +L +G++V G V ++PYG F+DI G GLLH++Q+S + + T+ + G ++KV
Sbjct: 192 AIGKLTVGTLVEGKVAKIQPYGVFVDINGATGLLHITQVSGVHIDSLTTIFKIGQSIKVL 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|416391978|ref|ZP_11685808.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
gi|357263726|gb|EHJ12695.1| SSU ribosomal protein S1p [Crocosphaera watsonii WH 0003]
Length = 304
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF++++F AL+ YD+ E G V+G V + GA VDI KS+ ++P E +
Sbjct: 13 ISFSMDDFTQALDDYDYKCEKGQVVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRP 72
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E I+P +E EF++I E AD + LS R +Q + AWE ++ V+ +V
Sbjct: 73 DLAE--ILPIDEEKEFIVISEQNADGQVKLSRRQLQLKEAWENVEEIAEMGHSVQMRVTR 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGVV EVEGL+GF+P S + K L+G+ L F+EV++ ++LVLS R+A+A
Sbjct: 131 TNKGGVVGEVEGLQGFIPRSHLMEKEDLNGLVGQLLTATFLEVNQSTNKLVLSQRRAIAA 190
Query: 258 SQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ +L +G +V G V ++PYG F+D G++GLLH++Q+S RV D+ V + +KV
Sbjct: 191 ARMDKLEVGQLVSGKVARIQPYGIFVDFEGVSGLLHITQVSGSRVDDLNHVFKYNQEIKV 250
Query: 317 CL 318
+
Sbjct: 251 MI 252
>gi|425446442|ref|ZP_18826446.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
gi|389733348|emb|CCI02879.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9443]
Length = 285
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVTSIPE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|443475240|ref|ZP_21065196.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
gi|443019959|gb|ELS33979.1| RNA binding S1 domain protein [Pseudanabaena biceps PCC 7429]
Length = 297
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/239 (36%), Positives = 140/239 (58%), Gaps = 1/239 (0%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F+ ++F +AL ++++ +G VKG V ++ G VDI AKS +LP +EA +
Sbjct: 10 FSADDFANALAEHNYEFAVGQIVKGKVVSVESSGIYVDIGAKSLGFLPIEEATLSGSSRS 69
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
G + EF+II AD + LS+R + ++ AW+ R Q+E V + KV+G N
Sbjct: 70 NSDAFPIGNEYEFLIISSQNADGEVKLSVRRLLFKQAWQTLRDYQAESKVFETKVIGTNS 129
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA-DSQ 259
GGV+ + GLRGF+P S +S S +L+GK LP+ ++ DE + +LVLSNR+A +
Sbjct: 130 GGVIVDSVGLRGFIPRSHLSDTSDLAKLVGKILPVVVLDADETRKKLVLSNRQAAKLAAM 189
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL G ++ G V +++P+GAF++ G++GLLH+ ++S V D V Q D +K +
Sbjct: 190 NQLAKGQLITGKVTNIRPFGAFVEFAGVSGLLHIKEMSQKPVNDPTHVFQINDIIKAVV 248
>gi|425464130|ref|ZP_18843452.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
gi|389833884|emb|CCI21164.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9809]
Length = 293
Score = 167 bits (424), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F AL++YD+ E G V+G V + GA +DI KSSA++ +E + +
Sbjct: 6 AFSMDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFISLREISLENVTS 65
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EA +P E +F+I +A+ + LSLR + + AWE R++ V+ +V G
Sbjct: 66 IAEA--LPIDAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGV 123
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMAD 257
NKGGV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A+
Sbjct: 124 NKGGVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARAN 183
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G +KV
Sbjct: 184 AISQLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVV 243
Query: 318 L 318
+
Sbjct: 244 V 244
>gi|67922621|ref|ZP_00516127.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
gi|67855549|gb|EAM50802.1| RNA binding S1 [Crocosphaera watsonii WH 8501]
Length = 313
Score = 167 bits (423), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 146/242 (60%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF++++F AL+ YD+ E G V+G V + GA VDI KS+ ++P E +
Sbjct: 22 ISFSMDDFTQALDDYDYKCEKGQVVRGKVIQHSDDGAYVDIGGKSAGFVPINEVDLESRP 81
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E I+P +E EF++I E AD + LS R +Q + AWE ++ V+ +V
Sbjct: 82 DLAE--ILPIDEEKEFIVISEQNADGQVKLSRRQLQLKEAWENVEEIAEMGHSVQMRVTR 139
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGVV EVEGL+GF+P S + K L+G+ L F+EV++ ++LVLS R+A+A
Sbjct: 140 TNKGGVVGEVEGLQGFIPRSHLMEKEDLNGLVGQLLTATFLEVNQSTNKLVLSQRRAIAA 199
Query: 258 SQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ +L +G +V G V ++PYG F+D G++GLLH++Q+S RV D+ V + +KV
Sbjct: 200 ARIDKLEVGQLVSGKVARIQPYGIFVDFEGVSGLLHITQVSGSRVDDLNHVFKYNQEIKV 259
Query: 317 CL 318
+
Sbjct: 260 MI 261
>gi|166363378|ref|YP_001655651.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
gi|166085751|dbj|BAG00459.1| nucleic acid-binding protein [Microcystis aeruginosa NIES-843]
Length = 293
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/241 (36%), Positives = 146/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++++F AL++YD+ E G V+G V + GA +DI KSSA++ +E + +
Sbjct: 6 AFSMDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFISLREISLENVTS 65
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ EA +P E +F+I +A+ + LSLR + + AWE R++ V+ +V G
Sbjct: 66 IAEA--LPIDAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGV 123
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMAD 257
NKGGV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A+
Sbjct: 124 NKGGVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARAN 183
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ +QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G +KV
Sbjct: 184 AISQLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVV 243
Query: 318 L 318
+
Sbjct: 244 V 244
>gi|428313261|ref|YP_007124238.1| 30S ribosomal protein S1 [Microcoleus sp. PCC 7113]
gi|428254873|gb|AFZ20832.1| ribosomal protein S1 [Microcoleus sp. PCC 7113]
Length = 302
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 145/243 (59%), Gaps = 6/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
VSF++++F ALE++D+ + G V+G V+ + GA VDI KS AY+P E +
Sbjct: 13 VSFSMDDFAKALEQHDYGFKKGQVVRGKVYNYETDGAYVDIGGKSLAYVPINEVSVKS-- 70
Query: 139 HVEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
+ + ++P L EE F+IIGE +AD + LS R ++ + W+ ++Q E + +V
Sbjct: 71 SGDWSDVLP-LHEELDFLIIGEQDADGQVTLSRRQLEVKRLWDELAEVQEEGKSFQVRVT 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G NKGGV ++ GLRGF+P S +S + + L+G+ L +E D E+++LV+S R+A
Sbjct: 130 GVNKGGVTVDMRGLRGFIPRSHLSEREDLDSLIGQTLTATILEADRERNKLVVSQRQATR 189
Query: 257 DSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ +QL +G +V G + S+KP+G F+D GI GLLH+ Q+S + + V Q G +K
Sbjct: 190 SAGFSQLELGQLVEGKITSIKPFGLFVDFEGITGLLHIKQVSQTFIESLPAVFQIGQIIK 249
Query: 316 VCL 318
+
Sbjct: 250 AMI 252
>gi|218438198|ref|YP_002376527.1| RNA binding S1 domain-containing protein [Cyanothece sp. PCC 7424]
gi|218170926|gb|ACK69659.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7424]
Length = 284
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 86/238 (36%), Positives = 148/238 (62%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F ALE++++N E G V+G V + GA V+I KS ++P +EA I + ++ +
Sbjct: 1 MDDFAQALEQFNYNFEKGQIVRGKVIQYTSDGAYVEIGGKSPGFVPLREASIEPVTNLND 60
Query: 143 AGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+P +E +F+II +A+ L+LS R + + AW + +++ V+ +V G N+G
Sbjct: 61 --YLPLDQEQDFLIISSADAEGQLILSRRQLIIKQAWNQVKEIAESGTSVQMRVTGINRG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQA 260
GV EVEGLRGF+P S + K + L+G+ + F++VD + ++LVLS R+ + A + +
Sbjct: 119 GVTGEVEGLRGFIPRSHLVEKEDLDSLVGQSITANFIQVDPDNNKLVLSQRQLVRAAAMS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL IG++V G V ++PYG F+DI G GLLH++Q+S + + T+ + G T+KV +
Sbjct: 179 QLTIGTLVEGKVAKIQPYGVFVDINGATGLLHITQVSGVHIDALTTIFKIGQTIKVMI 236
>gi|428307313|ref|YP_007144138.1| RNA binding S1 domain-containing protein [Crinalium epipsammum PCC
9333]
gi|428248848|gb|AFZ14628.1| RNA binding S1 domain protein [Crinalium epipsammum PCC 9333]
Length = 300
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 90/241 (37%), Positives = 144/241 (59%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALE++D++ + G V+G V D G VDI KS A +P QE + I
Sbjct: 14 SFTMDDFAKALEQHDYSFQQGQVVRGKVHSYDTDGVYVDIGGKSLAVVPIQEIAANDITD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V + ++P +E EF+II E +AD + LS R +Q + AW+ ++Q V+ +V G
Sbjct: 74 V--STVLPLQEEQEFLIIREQDADGQVTLSRRQLQIKHAWDSIAEMQDNKQSVQVRVSGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MAD 257
NKGGV + +G+RGF+P S + + EL+G++L F+EV+ E +LV S R+A A
Sbjct: 132 NKGGVTVDFQGVRGFIPRSHLIDRENLPELVGQNLTTSFLEVNPETKKLVFSQREANRAA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S +QL +G +V G V SLKP+G F++ G GL+H+ Q+S + + ++ + G +K
Sbjct: 192 SFSQLEVGQLVEGKVSSLKPFGIFVETEGTTGLIHIKQVSQKYIESLPSLFEIGQPIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|425452688|ref|ZP_18832503.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
gi|389765385|emb|CCI08684.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
7941]
Length = 285
Score = 167 bits (423), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|440754892|ref|ZP_20934094.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
gi|440175098|gb|ELP54467.1| S1 RNA binding domain protein [Microcystis aeruginosa TAIHU98]
Length = 285
Score = 167 bits (423), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFIPLREISLENVISIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|298491699|ref|YP_003721876.1| RNA-binding S1 domain-containing protein ['Nostoc azollae' 0708]
gi|298233617|gb|ADI64753.1| RNA binding S1 domain protein ['Nostoc azollae' 0708]
Length = 301
Score = 167 bits (422), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V G VF D+ GA VDI KSSA+LP E + + +
Sbjct: 14 SFSMDDFAKALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEVSLRVVTN 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ + ++P +E EF+II + +A+ + LS + ++ + W+ Q+Q ++ +V G
Sbjct: 74 LSD--VLPMNEELEFLIIRDQDAEGQVTLSRKQLEIQHLWDTLTQMQENSQTIQARVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGG+ EV LRGF+P S +S + E L G+ L F+EV+ +L+LS R A S
Sbjct: 132 NKGGITVEVLSLRGFIPRSHLSERDNLEALKGQTLTAGFLEVNRNTKKLILSERLATRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L +G +V GT+ +KP+G F+D+ G++ LLH+ Q+S + + V Q G +K
Sbjct: 192 NFSLLEVGQLVEGTITGIKPFGVFVDLEGVSALLHIKQVSQKFIESLEKVFQIGQQIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|186681340|ref|YP_001864536.1| RNA-binding S1 domain-containing protein [Nostoc punctiforme PCC
73102]
gi|186463792|gb|ACC79593.1| RNA binding S1 domain protein [Nostoc punctiforme PCC 73102]
Length = 300
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 87/242 (35%), Positives = 147/242 (60%), Gaps = 6/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SFT+++F ALEK+D+ + G V G VF D+ GA VDI KSSA+LP EA + +
Sbjct: 14 SFTMDDFAKALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRAVTD 73
Query: 140 VEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E ++P L+EE F+II + +A+ + LS + ++ + WER ++Q V+ +V+G
Sbjct: 74 LSE--VLP-LQEEMQFLIIRDQDAEGQVTLSRKQLEIQHIWERLAEMQENAQTVQVRVMG 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGV ++ LRGF+P S ++ + + L G++L + F+E+++ ++L+LS R A
Sbjct: 131 VNKGGVTVDILSLRGFIPRSHLAERDNLDALKGQNLTVGFLEINKNTNKLILSQRLATRS 190
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S + L +G +V G V +KP+G F+D+ G+ LLH+ Q+S + + V + G +K
Sbjct: 191 SNFSLLELGQLVEGKVTGIKPFGVFVDLNGMGALLHIKQVSQKFIDSLEKVFKVGQPIKA 250
Query: 317 CL 318
+
Sbjct: 251 VI 252
>gi|425459775|ref|ZP_18839261.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
gi|389827691|emb|CCI20878.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9808]
Length = 287
Score = 167 bits (422), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 145/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++P +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAYIDIGGKSSAFIPLREISLENVISIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|428775694|ref|YP_007167481.1| 30S ribosomal protein S1P [Halothece sp. PCC 7418]
gi|428689973|gb|AFZ43267.1| SSU ribosomal protein S1P [Halothece sp. PCC 7418]
Length = 299
Score = 166 bits (421), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 97/243 (39%), Positives = 143/243 (58%), Gaps = 5/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V F+ ++F AL YD++ + G V+G DN A VDI KS LP +EA I
Sbjct: 15 VPFSQDDFEKALADYDYHFQQGEVVRGKAVNYDNDVAYVDIGGKSPGLLPLKEADIAGTT 74
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E+ I+P +E EF++I E AD + LS R +Q + WE + Q+E V+ +V G
Sbjct: 75 RFED--IIPLDEELEFLVIREQNADGQVTLSRRQLQEQRVWETLEEYQTERKPVEMQVTG 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-A 256
+N+GGV E+ GLR FVP S + + ++L+G+ + +EV E RLVLS R+A A
Sbjct: 133 SNRGGVKGEIMGLRAFVPRSHLLAADNLDDLIGQTVTGLLIEVKPEDKRLVLSQREAAKA 192
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
D+ Q+ GS++ G V +LKPYGAFI++ G+ GLLH+ Q+S RV + VL G+ +K
Sbjct: 193 DAMGQIIAGSLIEGKVVNLKPYGAFIELAAGVTGLLHIKQVSQKRVESLEEVLTVGEMIK 252
Query: 316 VCL 318
V +
Sbjct: 253 VMI 255
>gi|425472173|ref|ZP_18851024.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
gi|389881815|emb|CCI37679.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9701]
Length = 285
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++ +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAYIDIGGKSSAFISLREISLENVTSIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQMRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G +KV +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIKVVV 236
>gi|282897419|ref|ZP_06305421.1| RNA binding S1 [Raphidiopsis brookii D9]
gi|281198071|gb|EFA72965.1| RNA binding S1 [Raphidiopsis brookii D9]
Length = 299
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 4/238 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V+G VF D+ GA VDI KSSA+LP EA + +
Sbjct: 14 SFSMDDFAKALEKHDYQFQKGQTVRGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRTVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E I+P +E EF+II E +A+ + +S R ++ + WE+ Q+Q + +V+G
Sbjct: 74 LSE--ILPLNEEMEFLIIREQDAEGQVTISRRQLEIQHIWEKVAQMQENSQSIPVRVIGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV EV LRGF+P S + + E L G+ L + F+EV+ +L+LS R A S
Sbjct: 132 NKGGVNVEVLSLRGFIPKSHLLERENLEALKGQTLTVGFLEVNRANKKLILSQRLATRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ L +V G V +KP+G F+D+ G++ LLH+ Q+S + V Q G +K
Sbjct: 192 NLSLLQTDQLVTGKVTGIKPFGVFVDLDGVSALLHIKQVSQKFTESLEKVFQIGQEIK 249
>gi|86608329|ref|YP_477091.1| 30S ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86556871|gb|ABD01828.1| putative ribosomal protein S1 [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 304
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 148/242 (61%), Gaps = 6/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F+ E+F AL+K + + + G V+G +F N GALVDI KS A+LP +EA I +
Sbjct: 13 TFSAEDFAQALDKQNLSFQPGQVVQGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRPGED 72
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ + + P E EF+I+ E+ A+ +VLS R ++ + WE Q Q+ V V+
Sbjct: 73 L--SALFPLKTEAEFLILRED-AEGQIVLSARRLRLKRLWEELAQKQANGQTVTVPVIAT 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGVV +V+GLRGF+P S +S + EEL+G+ L F+EV+ E ++LVLS R A+ ++
Sbjct: 130 NKGGVVVDVQGLRGFIPRSHLSQREGLEELVGQSLTASFIEVNPEANKLVLSQRAAVKSE 189
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ ++ G VV G V LKP+G F+D+ G+ GLLH+ Q+S VA + + +PG +K
Sbjct: 190 NLSRYTSGQVVEGKVSGLKPFGVFVDLEEGVTGLLHIKQVSQSFVASLPDLFKPGQRIKA 249
Query: 317 CL 318
+
Sbjct: 250 VV 251
>gi|434391256|ref|YP_007126203.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
gi|428263097|gb|AFZ29043.1| RNA binding S1 domain protein [Gloeocapsa sp. PCC 7428]
Length = 299
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/238 (35%), Positives = 143/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++ DF G V+G VF ++ GA VDI KS+A++P E +H + +
Sbjct: 16 MDDFAKALDQQDFQFSKGQVVRGKVFQYESDGAYVDIGGKSAAFIPLTEVGLHSVSDL-- 73
Query: 143 AGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ ++P +E EF+II E D + LS R +Q + WE+ ++Q + ++ +V G NKG
Sbjct: 74 STVLPLQEEQEFLIIREQNVDGQVTLSRRQLQIKQLWEQLSEMQEDGKSLEVRVKGVNKG 133
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQA 260
GV +V+GLRGF+P S + + E L+G++L +EV+ + ++LVLS R A + +
Sbjct: 134 GVTVDVQGLRGFIPRSHLLERENLENLVGQNLNASLLEVNRDNNKLVLSQRLATRSQAMT 193
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
Q G VV G + ++KP+G F+++ GINGLLH+ QIS + V + ++ Q G + +
Sbjct: 194 QFEPGQVVTGKISAIKPFGVFVELDGINGLLHIKQISQNYVESLPSLFQTGQEISAVV 251
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 10/99 (10%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N ++ LVLS R+ A + Q VV GK+ GV E++G+ G + Q
Sbjct: 173 NRDNNKLVLSQRLATRSQAMTQFEPGQ----VVTGKISAIKPFGVFVELDGINGLLHIKQ 228
Query: 219 ISSKSTAEEL-----LGKDLPLKFVEVDEEQSRLVLSNR 252
IS ++ E L G+++ V+VDE QSR+ LS R
Sbjct: 229 IS-QNYVESLPSLFQTGQEISAVVVDVDESQSRISLSTR 266
>gi|434402430|ref|YP_007145315.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
gi|428256685|gb|AFZ22635.1| ribosomal protein S1 [Cylindrospermum stagnale PCC 7417]
Length = 300
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 143/240 (59%), Gaps = 4/240 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
FT+++F ALEK+D+ + G V G VF D+ GA VDI KSSA+LP EA + + +
Sbjct: 15 FTMDDFAKALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRAVTDL 74
Query: 141 EEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E ++P +E EF+II + +A+ + LS + ++ + W+R ++Q V+ +V+G N
Sbjct: 75 SE--VLPMQEELEFLIIRDQDAEGQVTLSRKQLEIQHIWDRLLEMQENSQTVQVRVMGVN 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
KGGV ++ LRGF+P S + + E L G+ L + F+E++ ++L+LS R A S
Sbjct: 133 KGGVTVDLLSLRGFIPRSHLQERDNLEALKGQTLNVGFLEINRNTNKLILSQRLATRSSN 192
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ L +G +V G + +KP+G F+D+ G++ LLH+ Q+S + + V Q G +K +
Sbjct: 193 FSLLELGQLVEGKITGIKPFGVFVDLDGMSALLHIKQVSQKFIESLEKVFQNGQKIKAVI 252
>gi|126654692|ref|ZP_01726226.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
gi|126623427|gb|EAZ94131.1| 30S ribosomal protein S1 [Cyanothece sp. CCY0110]
Length = 304
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF++++F AL++YD+ E G ++G V + GA VDI KS+ ++P E +
Sbjct: 13 ISFSMDDFTKALDQYDYKCEKGQVIRGKVIQHTDEGAFVDIGGKSAGFVPINEVDLQSRP 72
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E I+P +E EF++ E AD + LS R +Q + AWE ++ V+ +V
Sbjct: 73 NLAE--ILPLDEEREFLVTSEQNADGQVKLSRRQLQLKEAWENVGEIAEMGHSVQMRVTR 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGVV EVEGL+GF+P S + K L+G+ L F+EV+ ++LVLS RKA+A
Sbjct: 131 TNKGGVVGEVEGLQGFIPRSHLLEKEDLNALVGQMLTATFLEVNPSTNKLVLSQRKAIAA 190
Query: 258 SQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ +L G +V G V ++PYG F+D G++GLLH++Q+S RV D+ + + +KV
Sbjct: 191 ARMDKLEAGQLVSGKVSRIQPYGVFVDFEGVSGLLHITQVSGSRVDDLNHIFKYNQDIKV 250
Query: 317 CL 318
+
Sbjct: 251 MI 252
>gi|282900723|ref|ZP_06308665.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
gi|281194523|gb|EFA69478.1| RNA binding S1 [Cylindrospermopsis raciborskii CS-505]
Length = 299
Score = 165 bits (418), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 90/238 (37%), Positives = 139/238 (58%), Gaps = 4/238 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V+G VF D+ GA VDI KSSA+LP EA + +
Sbjct: 14 SFSMDDFAKALEKHDYQFQKGQIVRGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRTVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E I+P +E EF+II E +A+ + +S R ++ + WE+ Q+Q + +V+G
Sbjct: 74 LSE--ILPLNEEMEFLIIREQDAEGQVTISRRQLEIQHIWEKVAQMQENSQSIPVRVIGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGGV EV LRGF+P S + + E L G+ L + F+EV+ +L+LS R A S
Sbjct: 132 NKGGVNVEVLSLRGFIPKSHLVERENLEALKGQTLTVGFLEVNRANKKLILSQRLATRSS 191
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ L +V G V +KP+G F+D+ G++ LLH+ Q+S + V Q G +K
Sbjct: 192 NLSLLQTDQLVTGKVTGIKPFGVFVDLDGVSALLHIKQVSQKFTESLEKVFQIGQEIK 249
>gi|300869072|ref|ZP_07113673.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
gi|300332929|emb|CBN58869.1| 30S ribosomal protein S1 [Oscillatoria sp. PCC 6506]
Length = 318
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 91/226 (40%), Positives = 142/226 (62%), Gaps = 9/226 (3%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVII 156
LG V GTV + GAL+D+ ++ +AY+P +E I +++ E+ V L E +F ++
Sbjct: 42 LGEIVIGTVCKLEPEGALIDLGSEIAAYIPLREMSIVEVESPEQ---VLQLNETRQFSVV 98
Query: 157 ---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+ E + L LS+R ++ +AWER RQ+Q+E+V V V N GG ++EGLRGF
Sbjct: 99 RDYSDPENNPRLSLSIRELERRIAWERVRQMQAENVTVYATVYAMNPGGASVKIEGLRGF 158
Query: 214 VPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-AQLGIGSVVIGTV 272
+P S I + E+L+G++LPLKF+EVDEE RL LS+R A+ + +L +G VV+G +
Sbjct: 159 IPSSHICTDKPKEDLIGEELPLKFLEVDEECDRLSLSHRSALLEPMIKKLKVGDVVVGKI 218
Query: 273 QSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ LKPYGA+++IG + LLH+S+ISH +V + D +KV +
Sbjct: 219 RGLKPYGAWVNIGDVPALLHISEISHVPFDASDSVFKVNDEVKVMI 264
>gi|422303041|ref|ZP_16390396.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
gi|389792049|emb|CCI12194.1| 30S ribosomal protein S1 homolog B [Microcystis aeruginosa PCC
9806]
Length = 285
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++ +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAFIDIGGKSSAFISLREISLENVTSIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|390439916|ref|ZP_10228280.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
gi|389836686|emb|CCI32404.1| 30S ribosomal protein S1 homolog B [Microcystis sp. T1-4]
Length = 285
Score = 164 bits (415), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 144/238 (60%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F AL++YD+ E G V+G V + GA +DI KSSA++ +E + + + E
Sbjct: 1 MDDFAKALDQYDYQFEKGQIVRGRVDQHTSDGAYIDIGGKSSAFISLREISLENVTSIAE 60
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
A +P G + +F+I +A+ + LSLR + + AWE R++ V+ +V G NKG
Sbjct: 61 A--LPIGAEFDFLITRGQDAEGQVTLSLRQLLLQKAWENVREISESGKSVQLRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQA 260
GV EVEGL+GF+P S + K+ + L+G+ L F+++D+E ++LVLS R+ A A++ +
Sbjct: 119 GVTGEVEGLKGFIPRSHLIEKNDLDSLIGQLLTATFIQIDQENNKLVLSQREIARANAIS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
QL +G ++ GTV L+PYG F+D GG+ GLLH Q++ T + G ++V +
Sbjct: 179 QLAVGKLLSGTVVKLQPYGVFVDCGGVTGLLHAKQVTGASFNSPMTFFKVGQAIQVVV 236
>gi|172036568|ref|YP_001803069.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|354553347|ref|ZP_08972654.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
gi|171698022|gb|ACB51003.1| 30S ribosomal protein S1 [Cyanothece sp. ATCC 51142]
gi|353555177|gb|EHC24566.1| RNA binding S1 domain protein [Cyanothece sp. ATCC 51472]
Length = 302
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 90/242 (37%), Positives = 145/242 (59%), Gaps = 4/242 (1%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+SF++++F AL++YD+ E G ++G V + GA VDI KS+ ++P E +
Sbjct: 13 ISFSMDDFSKALDQYDYKCEKGQVIRGKVIQHTDDGAFVDIGGKSAGFVPINEVDLQSRP 72
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E I+P +E EF++I E A+ + LS R +Q + AWE + V+ +V
Sbjct: 73 NLAE--ILPLDEEREFLVISEQNAEGQVKLSRRQLQLKEAWENVAESAEMGHSVQMRVTR 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
NKGGVV EVEGL+GF+P S + K L+G+ L F+EV+ ++LVLS RKA+A
Sbjct: 131 TNKGGVVGEVEGLQGFIPRSHLLEKEDLNSLVGQLLTATFLEVNPSTNKLVLSQRKAIAA 190
Query: 258 SQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ +L G +V G V ++PYG F+D G++GLLH++Q+S RV D+ + + +KV
Sbjct: 191 ARMDKLEAGQLVTGKVSRIQPYGVFVDFEGVSGLLHITQVSGSRVDDLNHLFKYNQDIKV 250
Query: 317 CL 318
+
Sbjct: 251 MI 252
>gi|427720049|ref|YP_007068043.1| RNA binding S1 domain-containing protein [Calothrix sp. PCC 7507]
gi|427352485|gb|AFY35209.1| RNA binding S1 domain protein [Calothrix sp. PCC 7507]
Length = 299
Score = 164 bits (414), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 86/240 (35%), Positives = 140/240 (58%), Gaps = 4/240 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
FT+++F ALEK+D+ + G V G VF D+ GA VDI KSSA++P EA + + +
Sbjct: 15 FTMDDFAKALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFIPRDEASLRTVTDL 74
Query: 141 EEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E ++P E EF+II + +A+ + LS + ++ + WER ++Q V +V G N
Sbjct: 75 SE--VLPLQAELEFLIIRDQDAEGQVTLSRKQLEIQQIWERLTEMQENSQTVTVRVTGVN 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
KGGV ++ LRGF+P S + + E L G +L + F+E++ ++L+LS R A S
Sbjct: 133 KGGVTVDILSLRGFIPRSHLLERDNLEGLKGHNLTVGFLEINRSSNKLILSQRLATRSSS 192
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ L +G +V G + +KP+G F+D+ GI+ LLH+ Q+S + + V Q G +K +
Sbjct: 193 FSLLELGQLVEGKITGIKPFGVFVDLEGISALLHIKQVSQKFIESLEKVFQIGQPIKAVI 252
>gi|428779018|ref|YP_007170804.1| 30S ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
gi|428693297|gb|AFZ49447.1| ribosomal protein S1 [Dactylococcopsis salina PCC 8305]
Length = 302
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 145/243 (59%), Gaps = 5/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
V F+ ++F AL +YD++ + G V+G D+ A VDI KS LP EA + I
Sbjct: 15 VPFSQDDFEKALPEYDYHFQKGQIVRGKAINYDSNYAYVDIGGKSPGLLPFAEANLGSIA 74
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
EEA +P +E E ++I E +AD + LS + +Q + WE + Q++ V+ V G
Sbjct: 75 SFEEA--IPLDEEIELLVIREQDADGQVTLSRKQLQEQRVWETLEEYQADKKPVEIVVTG 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-A 256
+N+GGV E+ GLR FVP S I + ++L+G+ + +EV+ E RLVLS R+A A
Sbjct: 133 SNRGGVKGEIMGLRAFVPRSHILASDNLDDLIGQTVTGILIEVNPEDKRLVLSQREAAKA 192
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
D+ Q+ GS++ G + +LKPYGAF+++ G+ GLLH+ QIS RV + ++ G+TLK
Sbjct: 193 DAMGQIIAGSLIEGKIVNLKPYGAFVELAAGVTGLLHIKQISQKRVDSLESLFSVGETLK 252
Query: 316 VCL 318
V +
Sbjct: 253 VMI 255
>gi|300867598|ref|ZP_07112247.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
gi|300334405|emb|CBN57417.1| SSU ribosomal protein S1P [Oscillatoria sp. PCC 6506]
Length = 306
Score = 163 bits (413), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 147/241 (60%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALE++++ + G V+G V ++ GA +DI AKS A+LP +E + +
Sbjct: 14 SFSMDDFAKALEQHNYEFQKGQVVRGRVEEIESNGAYIDIGAKSPAFLPLEEVALRAVAD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ + ++P +E EF+II + D + LSLR ++ + W++ ++ + V++ +V G
Sbjct: 74 L--SKLLPLQEEREFLIIRDQNEDGQVTLSLRQLEIKKTWDQVTEMFNTGAVIQVRVTGH 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV +V G+RGF+P S + + + L+G+ + + F+EVD E+ +LVLS R A +
Sbjct: 132 NKGGVTVDVMGMRGFIPRSHVVERDNLQSLVGQSMSVSFLEVDREREKLVLSQRAATKSA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S +QL IG ++ G + S+K +G F+D GI GLLH+ ++S + ++ V G +K
Sbjct: 192 SFSQLEIGQIIEGKISSIKQFGVFVDFDGITGLLHIKEVSQKYINNLEKVFSVGQIIKAM 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|113476121|ref|YP_722182.1| 30S ribosomal protein S1P [Trichodesmium erythraeum IMS101]
gi|110167169|gb|ABG51709.1| SSU ribosomal protein S1P [Trichodesmium erythraeum IMS101]
Length = 304
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 87/243 (35%), Positives = 150/243 (61%), Gaps = 6/243 (2%)
Query: 80 SFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
SFT+++F ALE+ +N E G V G V ++ G VD+ KS A LP EA + I
Sbjct: 14 SFTMDDFAKALEQPQYNYEFKKGQIVTGKVNSYESEGIYVDVGGKSLALLPFPEASLGDI 73
Query: 138 KHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
+ + EA +P +E EF+II E +AD ++LS++ ++ WER +L++ + +V+
Sbjct: 74 EDLSEA--LPLQQEREFLIIREQDADGEVLLSIKQLEINQIWERLAELEAGGQSFQVRVI 131
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G NKGGV +++ LRGFVP S + ++ E L+ + L + F+E+D+E+ ++V+S R A
Sbjct: 132 GTNKGGVTVDIQSLRGFVPRSHLLARDNLESLIDQVLTVNFLELDQEKKKIVMSQRLATQ 191
Query: 257 DSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ ++L +G ++ G V +KP+G F+D+ G+ GLLH++Q+S RV ++T+ G+ +K
Sbjct: 192 SAGFSKLAVGQLLEGKVVGVKPFGVFVDLEGLTGLLHITQVSQKRVDSLSTIFSQGNLVK 251
Query: 316 VCL 318
+
Sbjct: 252 AMI 254
>gi|332711689|ref|ZP_08431620.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332349667|gb|EGJ29276.1| SSU ribosomal protein S1P [Moorea producens 3L]
gi|332688375|gb|AEE88267.1| SSU ribosomal protein S1P [Moorea producens 3L]
Length = 285
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/239 (37%), Positives = 143/239 (59%), Gaps = 6/239 (2%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F ALE+YD+ + G V+G V ++ GA VDI KS AYLP E + ++
Sbjct: 1 MDDFAQALEEYDYEFKQGQVVRGRVHNYESDGAYVDIGGKSLAYLPISEVSLES--DLDW 58
Query: 143 AGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
+ ++P L EE F+II E AD + LS R ++ + W+ +LQ + +V G NK
Sbjct: 59 SEVLP-LNEEMDFLIIREQNADGQVTLSRRQLEIKQVWDGLVELQENGKSLDVRVSGVNK 117
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQ 259
GGV +V GLRGF+P S +S + L+G+ L + F+E D ++ +LVLS R+A+ A +
Sbjct: 118 GGVTVDVRGLRGFIPRSHLSQHDNLDSLIGQKLTVNFLEADRDRKKLVLSQREAVRAATF 177
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++L +G +V G V ++KP+G F+D NGLLH+ Q+S V D++ V + G ++V +
Sbjct: 178 SELEVGQLVEGKVAAIKPFGVFVDFNQTNGLLHIKQVSQSFVEDLSKVFEIGQVIQVMI 236
>gi|254417151|ref|ZP_05030897.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
gi|196176129|gb|EDX71147.1| S1 RNA binding domain protein [Coleofasciculus chthonoplastes PCC
7420]
Length = 299
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 144/241 (59%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F++E+F ALE+YD+ G V+G V + G VDI KS AY+P E + ++
Sbjct: 14 AFSMEDFAKALEEYDYEFSQGQVVRGKVHSYEMEGVYVDIGGKSLAYVPGGEVSVAPVED 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E ++P +E EF+II E A+ + LS R ++ W++ Q+Q ++ +V G
Sbjct: 74 WSE--VLPLQEELEFLIIREQNAEGQITLSRRQLEINKIWDQLAQVQDSGKSLQVQVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV + +GLRGF+P S ++ + E L+G+ L + +E D ++S+LV S R+A A
Sbjct: 132 NKGGVTIDWQGLRGFIPRSHLNQRGNLESLIGQSLTVSILEADRDRSKLVFSQREATRAA 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S + L +G +V GTV +++P+G F+++ GI GLLH+ Q+S + V + + + G ++K
Sbjct: 192 SFSMLEVGQLVEGTVSNIRPFGVFVELEGITGLLHIKQVSQNMVESLTDMFEVGQSIKAI 251
Query: 318 L 318
+
Sbjct: 252 V 252
>gi|11465811|ref|NP_053955.1| ribosomal protein S1 [Porphyra purpurea]
gi|1710701|sp|P51345.1|RR1_PORPU RecName: Full=30S ribosomal protein S1, chloroplastic
gi|1276811|gb|AAC08231.1| 30S ribosomal protein S1 (chloroplast) [Porphyra purpurea]
Length = 263
Score = 163 bits (412), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IK 138
SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ +
Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELN 66
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ ++ G
Sbjct: 67 NFNSLNIND--TREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGF 124
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGG++ +EG+ GFVP S +++ S K + LK + V+E+ + L+LS+R+A+ A
Sbjct: 125 NKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQ 184
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K
Sbjct: 185 ASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAV 244
Query: 318 L 318
+
Sbjct: 245 I 245
>gi|443321178|ref|ZP_21050240.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
gi|442789096|gb|ELR98767.1| ribosomal protein S1 [Gloeocapsa sp. PCC 73106]
Length = 307
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 146/248 (58%), Gaps = 4/248 (1%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
++P + SF++++F ALE Y+F +G V G V G VDI AKS A+LP +E
Sbjct: 14 SSPKQNPSFSMDDFAKALEGYEFQFNIGQVVSGKVVQHSLEGVYVDIQAKSLAFLPLREI 73
Query: 133 CIHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
+ + A I+P E +F+I+ E +A+ + +SLR + + AWER +++ V
Sbjct: 74 PVTTASDL--AQIIPLDSERDFLIVKEQDAEGQITVSLRQLAMQHAWERLAEVKENGETV 131
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ V G NKGGV E+EGLR F+P S + K+ E L+G+ L +EVD E+++LVLS
Sbjct: 132 EMFVSGTNKGGVTGEIEGLRCFIPRSHLVQKNNLESLVGQSLSANLLEVDPERNKLVLSQ 191
Query: 252 RK-AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R+ A + ++L G +V G V ++ YG F+D+ G+ GLLH+ QIS+ + + + +
Sbjct: 192 RQMARTAAMSELQQGDLVEGKVARIESYGVFVDLNGVTGLLHIKQISNQHIESLFNLFRI 251
Query: 311 GDTLKVCL 318
G+++K +
Sbjct: 252 GESVKAII 259
>gi|323449583|gb|EGB05470.1| hypothetical protein AURANDRAFT_54676 [Aureococcus anophagefferens]
Length = 381
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDN-RGALVDITAKSSAYLP 128
R + + EF + + +++ + G + GTV D + A+V++ AK++A LP
Sbjct: 41 RYNSVDQSKTDMSYAEFGALVTAQEYSFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLP 100
Query: 129 TQEACIHKIKHVEEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+EA I + E + G + EF I+ ++ D + +S++ I Y AWE + +
Sbjct: 101 LREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYA 160
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI-SSKSTAEELLGKDLPLKFVEVDEEQS 245
ED V + ++V N+GG + VEGLR F+P S I S +E ++GK +PLKF+EV++E +
Sbjct: 161 EDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEAN 220
Query: 246 RLVLSNRKAMAD-SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LV+SNR+A+ + S A + G V GTV ++KPYGAF++I G++GLLH+SQIS+DRV D+
Sbjct: 221 KLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDL 280
Query: 305 ATVLQPGDTLKVCL 318
L G +K C+
Sbjct: 281 DATLACGMAIK-CM 293
>gi|323449334|gb|EGB05223.1| hypothetical protein AURANDRAFT_38598 [Aureococcus anophagefferens]
Length = 381
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 94/254 (37%), Positives = 153/254 (60%), Gaps = 6/254 (2%)
Query: 70 RCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDN-RGALVDITAKSSAYLP 128
R + + EF + + +++ + G + GTV D + A+V++ AK++A LP
Sbjct: 41 RYNSVDQSKTDMSYAEFGALVTAQEYSFKNGDILTGTVVQYDGPQKAMVEVGAKTAAVLP 100
Query: 129 TQEACIHKIKHVEEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+EA I + E + G + EF I+ ++ D + +S++ I Y AWE + +
Sbjct: 101 LREATIAPLGDGETIATFVDVGEQYEFQIVSDSRDDGQVTVSIKKIMYAKAWETLSEWYA 160
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI-SSKSTAEELLGKDLPLKFVEVDEEQS 245
ED V + ++V N+GG + VEGLR F+P S I S +E ++GK +PLKF+EV++E +
Sbjct: 161 EDPVFEAEIVQVNRGGAIVLVEGLRAFLPGSHIMGSGGASEAMIGKKIPLKFLEVNQEAN 220
Query: 246 RLVLSNRKAMAD-SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LV+SNR+A+ + S A + G V GTV ++KPYGAF++I G++GLLH+SQIS+DRV D+
Sbjct: 221 KLVVSNRRAVIEHSMASIKRGDVYDGTVTAVKPYGAFVEIMGMSGLLHISQISYDRVEDL 280
Query: 305 ATVLQPGDTLKVCL 318
L G +K C+
Sbjct: 281 DATLACGMAIK-CM 293
>gi|428218680|ref|YP_007103145.1| RNA binding S1 domain-containing protein [Pseudanabaena sp. PCC
7367]
gi|427990462|gb|AFY70717.1| RNA binding S1 domain protein [Pseudanabaena sp. PCC 7367]
Length = 296
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 139/251 (55%), Gaps = 10/251 (3%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
TA SF+ EF AL+++++ +G + G + G VD+ KS A+LP EA
Sbjct: 2 TANNPSQSFSANEFLEALDQHNYEFGVGQIISGKIISHARDGVYVDVGGKSPAFLPADEA 61
Query: 133 CIHKIKHVEEAGIVPGL----KEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 188
+ + +V L + EF+II E A+ + LS+R + + AW++ + Q+E+
Sbjct: 62 MLES-----DTDLVTSLPLDSEHEFLIISEQNAEGEVKLSIRRMLIQKAWQQMQAYQAEE 116
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLV 248
+ V+ NKGGVV GLRGF+P S ++ K E L+GK LP+ +E++E +RLV
Sbjct: 117 TIFDCVVLHTNKGGVVVNAAGLRGFIPRSHLTVKDNLESLIGKTLPVSVIEINEPTNRLV 176
Query: 249 LSNRKAMADS-QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
LSN A+ S L G +V GTV ++P+G F++ G++GLLH+ +IS RV DI V
Sbjct: 177 LSNTNAVRTSVMGNLAKGQLVAGTVSGIRPFGVFLNFDGVSGLLHIKEISQARVNDINAV 236
Query: 308 LQPGDTLKVCL 318
GD + +
Sbjct: 237 FAIGDPVPAVI 247
>gi|427419513|ref|ZP_18909696.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
gi|425762226|gb|EKV03079.1| ribosomal protein S1 [Leptolyngbya sp. PCC 7375]
Length = 292
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 146/243 (60%), Gaps = 5/243 (2%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
++F+ ++F AL+++DFN + G V G V + GA +DI K++A+LP +EA +
Sbjct: 1 MTFSADDFLKALDQHDFNFQKGAVVTGKVDSHTDDGAYIDIGGKAAAFLPAREASVSSSV 60
Query: 139 HVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+EEA VP G + +F+I+ + +A+ ++LS+R ++ + W + ++ ++ V G
Sbjct: 61 TLEEA--VPIGSERQFLIVRDQDANGQVILSIRKLEIKEVWVHLVEREANKDILDVTVTG 118
Query: 198 ANKGGVVAEVEGLRGFVPFSQ-ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
NKGGV+A+VEGLRGFVP S ++ L+G + + F+EV+EE ++LVLS R A
Sbjct: 119 TNKGGVIADVEGLRGFVPRSHLVNPPEDLTTLVGHTISVAFLEVNEENNKLVLSGRNAAR 178
Query: 257 DSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ QL G ++ G V S+KP+G F+D G+ GLLHV QIS V I V + G +K
Sbjct: 179 TTALGQLNPGQLIDGKVGSIKPFGVFVDFDGVRGLLHVKQISKSFVPSIGDVFEVGQPVK 238
Query: 316 VCL 318
+
Sbjct: 239 AVV 241
>gi|428773714|ref|YP_007165502.1| 30S ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
gi|428687993|gb|AFZ47853.1| SSU ribosomal protein S1P [Cyanobacterium stanieri PCC 7202]
Length = 306
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 148/255 (58%), Gaps = 9/255 (3%)
Query: 71 CRTAPMEG---VSFTLEEFHSALEK--YDFNSELGTKVKGTVFCTDNRGALVDITAKSSA 125
+ P +G +F++++F ALE+ YD++ G VKG VF D G VDI KS
Sbjct: 3 ANSNPSQGQNAANFSMDDFAQALEQEQYDYHFNKGEIVKGKVFQHDPSGVYVDIGGKSPG 62
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQL 184
++P EA V E ++P +E EF+II E +++ + LS R + + AW+ ++
Sbjct: 63 FVPLSEAAWQSFGDVSE--VLPLDQEFEFLIIKEQDSEGQVKLSRRQLYIDQAWDNLTEV 120
Query: 185 QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQ 244
Q + +V+ V G N+GGV+ +++GLR F+P S + K EEL+ + LP +++D Q
Sbjct: 121 QEKGKLVQMLVTGVNRGGVIGQIDGLRAFIPRSHLIEKENFEELVDQTLPANILQLDRGQ 180
Query: 245 SRLVLSNRK-AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+++VL+ R A + + AQL VV G V L+PYG F+D GG+ GLLH+ QIS +
Sbjct: 181 NKIVLTQRNIAKSSAMAQLQEHQVVQGKVVKLQPYGVFVDFGGVAGLLHIKQISGGHIDS 240
Query: 304 IATVLQPGDTLKVCL 318
++ + + G+ +KV +
Sbjct: 241 VSHIFKVGEEIKVVV 255
>gi|125987739|sp|Q1XDE2.2|RR1_PORYE RecName: Full=30S ribosomal protein S1, chloroplastic
Length = 263
Score = 162 bits (409), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 142/240 (59%), Gaps = 4/240 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKH 139
FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ + +
Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNN 67
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ + G N
Sbjct: 68 FTSLNIND--TREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFN 125
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADS 258
KGG++ +EG+ GFVP S + + +E+ K + LK + V+E+ + L+LS+R+A+ + +
Sbjct: 126 KGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQA 185
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ L +G+++ G + + PYG FI +G + GL+H+S+I+ + I++ + GDT+K +
Sbjct: 186 SSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVI 245
>gi|427722304|ref|YP_007069581.1| 30S ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
gi|427354024|gb|AFY36747.1| SSU ribosomal protein S1P [Leptolyngbya sp. PCC 7376]
Length = 296
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 89/248 (35%), Positives = 150/248 (60%), Gaps = 5/248 (2%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
T+ ++F++++F AL +++++ E G VKG V + G +DI KS ++PT EA
Sbjct: 2 TSDNPSIAFSMDDFADALGEHEYHFEQGQTVKGKVVEQTSDGVFIDIKGKSPGFVPTGEA 61
Query: 133 CIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVV 191
+ ++E ++P G + EF+II E AD + LS R ++ + WE Q V
Sbjct: 62 LLAGETDLQE--VLPMGEEREFLIIREQNADGQVTLSRRKLEEKRIWEELAQAAESGSSV 119
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
+ ++ G+N+GGV +V+GLRGFVP S + K+ E L+G+ L + F+E+D+E+ +LVLS
Sbjct: 120 QIRITGSNRGGVTGDVKGLRGFVPNSHLVDKNV-EALMGQVLTVNFLELDQERRKLVLSQ 178
Query: 252 RK-AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
R A + +L IG++V G + ++KPYG F+++ G+ GLLH SQIS +V + + Q
Sbjct: 179 RHAAQVEIMRKLSIGALVTGKIANIKPYGVFVELDGMTGLLHRSQISDKQVPQLEDLFQV 238
Query: 311 GDTLKVCL 318
G ++V +
Sbjct: 239 GQEVRVLI 246
>gi|317969606|ref|ZP_07970996.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0205]
Length = 448
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 93/247 (37%), Positives = 142/247 (57%), Gaps = 2/247 (0%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
T ++ F E F +AL++ DF G V GTV ++ G VDI K+ ++P +E
Sbjct: 149 TRSVDDFDFDEEAFLAALDEQDFVGTTGEVVTGTVIGMESDGVYVDIGGKAPGFMPKKEC 208
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+ I +++E GL E ++ E AD + +S R + +WE+ R L+ E V++
Sbjct: 209 ALGVITNLKER-FPKGLTVEVLVTREQNADGMVTISARALALRQSWEKVRALEKEGKVIQ 267
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
KV G N GG+ +VEGLRGFVP SQ+ E L+GK L + F+EV+ + +LVLS +
Sbjct: 268 VKVNGFNHGGITCDVEGLRGFVPRSQLQEGENHEALVGKTLGVAFLEVNPDTRKLVLSEK 327
Query: 253 KAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
KA + Q L +G +V G V ++KPYG F+D+GGI+GLLH S I+ ++ D+ V G
Sbjct: 328 KAATAALFQNLEVGQLVEGQVVAIKPYGLFVDLGGISGLLHHSVITGGQMRDLREVFGQG 387
Query: 312 DTLKVCL 318
D +K +
Sbjct: 388 DRVKALI 394
>gi|56750057|ref|YP_170758.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|81300400|ref|YP_400608.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
gi|3122813|sp|O33698.1|RS1_SYNE7 RecName: Full=30S ribosomal protein S1
gi|2570205|gb|AAB82045.1| ribosomal protein S1 of 30S ribosome [Synechococcus elongatus PCC
7942]
gi|7328457|dbj|BAA92864.1| nucleic acid-binding protein [Synechococcus elongatus PCC 6301]
gi|22002498|gb|AAM82650.1| ribosomal protein S1 [Synechococcus elongatus PCC 7942]
gi|56685016|dbj|BAD78238.1| nucleic acid binding protein [Synechococcus elongatus PCC 6301]
gi|81169281|gb|ABB57621.1| RNA binding S1 [Synechococcus elongatus PCC 7942]
Length = 295
Score = 161 bits (407), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 4/247 (1%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
+P + + ++F ALE +S+ G V+G V GA +DI K+ A+LP +EA
Sbjct: 2 SPSAANTPSYDDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAA 61
Query: 134 IHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+H + +E +P +E EF++I + D + +SLR + E AW R +LQ V+
Sbjct: 62 LHAVLDLE--AHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQ 119
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
KV G+NKGGV A++EGLR F+P S ++ K + L GK L + F+EV+ +LVLS R
Sbjct: 120 VKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSER 179
Query: 253 KAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + G
Sbjct: 180 QAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIG 239
Query: 312 DTLKVCL 318
D ++ +
Sbjct: 240 DPIQALV 246
>gi|384246163|gb|EIE19654.1| S1-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 400
Score = 160 bits (405), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/255 (38%), Positives = 144/255 (56%), Gaps = 15/255 (5%)
Query: 78 GVSFTLEE-----FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
G+ FT E F+ LE+ + +LG KV GTV D RGA VD K Y P E
Sbjct: 80 GIDFTSTEDLYKRFNELLERSNMEIKLGDKVTGTVASVDQRGAYVDFGGKQPLYCPVAEI 139
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+ K+ +A V ++ +F + ++ L LS++ ++ L W+R RQ+ E V+
Sbjct: 140 SLCKLSKATQALQVDQVR-DFQVNYQDRRTGELRLSIKTLEKALLWQRLRQMSEEGATVE 198
Query: 193 GKVVGANKGGVVAEVEG--LRGFVPFSQISSKSTA----EELLGKDLPLKFVEVDEEQSR 246
V G++ + + GFVP S IS + LLG+ L LK +E+DEE+ R
Sbjct: 199 AVVDSVRPAGLIVRINASDVTGFVPGSHISPGPGPAVDWQTLLGETLNLKILELDEEKDR 258
Query: 247 LVLSNRKAMADSQAQ--LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVAD 303
LVLSNRK +++ Q L +G VV GTV +L+PYGAF+++G +NGLLH+SQISHDR++
Sbjct: 259 LVLSNRKNAFNTRRQINLQVGEVVDGTVATLQPYGAFVNLGDNMNGLLHISQISHDRISS 318
Query: 304 IATVLQPGDTLKVCL 318
+ VLQ G +KV +
Sbjct: 319 VENVLQVGQKVKVMI 333
>gi|440684640|ref|YP_007159435.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
gi|428681759|gb|AFZ60525.1| RNA binding S1 domain protein [Anabaena cylindrica PCC 7122]
Length = 300
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 143/241 (59%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF++++F ALEK+D+ + G V G VF D+ GA VDI KSSA+LP EA + +
Sbjct: 14 SFSMDDFAQALEKHDYQFQKGQVVHGKVFQLDHDGAYVDIGGKSSAFLPRDEASLRAVTD 73
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E ++P ++ EF+II + +A+ + LS + ++ + W + Q+Q V+ +V G
Sbjct: 74 LAE--VLPMQEDMEFLIIRDQDAEGQVTLSRKQLEIQQIWVKLLQMQENSQTVQVRVTGV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGGV ++ LRGF+P S ++ + E L G+ L F+E++ ++L+LS R A +
Sbjct: 132 NKGGVTVDLLSLRGFIPRSHLADRDNLETLKGQTLTAGFLEINRNTNKLILSQRLATRSS 191
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
S + L +G +V G + +KP+G F+++ G++ LLH+ Q+S + + V Q G +K
Sbjct: 192 SFSLLELGQLVEGKITGIKPFGVFVELNGVSALLHIKQVSQKFIESLEKVFQIGQPIKAV 251
Query: 318 L 318
+
Sbjct: 252 I 252
>gi|378787382|gb|AFC40013.1| ribosomal protein S1 [Porphyra umbilicalis]
Length = 263
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 141/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IK 138
SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ +
Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQELN 66
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ ++ G
Sbjct: 67 NFNSLNIND--TREFFLLDYNVESKQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGF 124
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGG++ +EG+ GFVP S ++S K + LK + V+E+ + L+LS+R+A+ A
Sbjct: 125 NKGGMIVNLEGISGFVPNSHLNSFHQNTPSTNKFIKLKLLNVEEKSNNLILSHRRALIAQ 184
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + G+T+K
Sbjct: 185 ASSNLIVGNIIEGVINQITPYGLFIKSGNLKGLVHISEINVKQVEKITSKFKIGETIKAV 244
Query: 318 L 318
+
Sbjct: 245 I 245
>gi|254430923|ref|ZP_05044626.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
gi|197625376|gb|EDY37935.1| hypothetical protein CPCC7001_814 [Cyanobium sp. PCC 7001]
Length = 422
Score = 159 bits (403), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/258 (35%), Positives = 149/258 (57%), Gaps = 9/258 (3%)
Query: 69 ERCRTAPMEGVSFTLEEFH-------SALEKYDFNSELGTKVKGTVFCTDNRGALVDITA 121
+R + P +GVS ++++F +AL++ DF G V G V ++ G VDI
Sbjct: 112 KRPASPPSQGVSRSVDDFDFDEQAFLAALDEQDFVGSTGGVVTGEVIGLESDGVYVDIGG 171
Query: 122 KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERC 181
K+ ++P +EA + I +++E G + E ++ E AD + +S R + +WE+
Sbjct: 172 KAPGFMPKKEAGLGVITNLKER-FPKGTQVEVLVTREQNADGMVTVSARALALRQSWEKV 230
Query: 182 RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVD 241
R L+ E VV+ KV G N+GGV ++EGLRGF+P SQ+ E L+GK L + F+EV+
Sbjct: 231 RVLEKEGKVVQVKVNGFNRGGVTCDLEGLRGFIPRSQLQEGENHEALVGKTLGVTFLEVN 290
Query: 242 EEQSRLVLSNRKAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
E +LVLS ++A ++ A+L +G +V G V S+KPYG F+D+GGI+GLLH S ++
Sbjct: 291 PETRKLVLSEKRAATAARFAELEVGQLVEGVVASIKPYGFFVDLGGISGLLHHSCVTGAE 350
Query: 301 VADIATVLQPGDTLKVCL 318
+ D+ G+ L +
Sbjct: 351 LRDLREAFSQGERLSALI 368
>gi|119513349|ref|ZP_01632384.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
gi|119461989|gb|EAW42991.1| 30S ribosomal protein S1 [Nodularia spumigena CCY9414]
Length = 284
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 140/238 (58%), Gaps = 4/238 (1%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+++F ALE +D+ + G V+G VF D GA VDI KSSA+LP +EA + + + E
Sbjct: 1 MDDFAKALEVHDYQFQKGQVVRGKVFQLDPNGAYVDIGGKSSAFLPREEASLRAVTDLSE 60
Query: 143 AGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
++P +E EF+II + +A+ + LS + ++ + WER ++ V+ +V G NKG
Sbjct: 61 --VLPLQEELEFLIIRDQDAEGQVTLSRKQLEIQQVWERLTEMNEGGQTVQVRVTGVNKG 118
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-A 260
GV ++ LRGF+P S ++ + E L G+ L + F+E++ ++L+LS R A S +
Sbjct: 119 GVTVDILSLRGFIPRSHLAERDNLEALKGQSLTVAFLEINRNTNKLILSQRLATRSSSFS 178
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L + +V G V +KP+G F+D+ G++ LLH+ Q+S + + V Q G T+K +
Sbjct: 179 LLQLNQLVEGRVTGIKPFGIFVDLDGLSALLHIKQVSQKYIESLEKVFQIGQTIKAVI 236
>gi|428769893|ref|YP_007161683.1| 30S ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
gi|428684172|gb|AFZ53639.1| SSU ribosomal protein S1P [Cyanobacterium aponinum PCC 10605]
Length = 300
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 152/252 (60%), Gaps = 6/252 (2%)
Query: 71 CRTAPMEGVSFTLEEFHSALEK--YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
++ +SF++++F ALE+ YD++ + G V+G VF + G VDI KS ++P
Sbjct: 5 SHSSASNNLSFSMDDFSQALEQEQYDYHFKQGDVVRGKVFEYSSDGVYVDIGGKSPGFVP 64
Query: 129 TQEACIHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE 187
E +V+E ++P +E +FVII E +A+ + LS R + + AW+ ++++ +
Sbjct: 65 QTEVDWRGSSNVKE--VLPLEQEFDFVIIKEQDAEGQVKLSRRQLFIDQAWDNLKEIEEK 122
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRL 247
+V+ V G N+GGV EV+GL+GF+P S ++ K E L+ + + +++D+++++L
Sbjct: 123 GAIVQMLVTGVNRGGVFGEVQGLKGFIPKSHLTQKEDLETLIDQTVDTNILQLDQKENKL 182
Query: 248 VLSNRK-AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
VL+ R A + + +QL VV G + ++PYG F+D GG++GLLH+ QIS +V + +
Sbjct: 183 VLTQRNIARSSALSQLKENEVVAGKIAKIQPYGVFVDFGGVSGLLHIKQISEGKVNALES 242
Query: 307 VLQPGDTLKVCL 318
Q G+ +KV +
Sbjct: 243 FFQIGEEVKVVI 254
>gi|428200960|ref|YP_007079549.1| 30S ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
gi|427978392|gb|AFY75992.1| ribosomal protein S1 [Pleurocapsa sp. PCC 7327]
Length = 300
Score = 157 bits (397), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 90/244 (36%), Positives = 146/244 (59%), Gaps = 6/244 (2%)
Query: 78 GVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
G+SF+L++F AL+++D+ G V+GTVF + GA VDI KS ++P +EA +
Sbjct: 12 GLSFSLDDFAKALDQHDYQFAKGQIVRGTVFEHTSEGAYVDIGGKSPGFVPLREASVKSG 71
Query: 138 KHVEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+ E+ +P L+EE F+I+ A+ + LS R ++ + AW+ ++ V+ +V
Sbjct: 72 VSLAES--LP-LREEKDFLIVSGQNAEGQVTLSRRQLELKKAWDSVSEIAESGKSVQMRV 128
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
G NKGGV EVEGLRGF+P S + K E L+G+ L F+EVD + +LVLS R+A
Sbjct: 129 TGVNKGGVTGEVEGLRGFIPRSHLIEKEDLESLVGQLLTATFLEVDPDNKKLVLSQRQAA 188
Query: 256 ADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ +L G+++ G V ++PYG F+D+ G+ GLLH+ Q+S + + T+ + G +
Sbjct: 189 RAAAIRKLETGALMEGKVVKIQPYGVFVDLDGVTGLLHIKQVSGSPIDSLTTLFKIGQEI 248
Query: 315 KVCL 318
KV +
Sbjct: 249 KVVI 252
>gi|78212274|ref|YP_381053.1| SSU ribosomal protein S1P [Synechococcus sp. CC9605]
gi|78196733|gb|ABB34498.1| RNA binding S1 [Synechococcus sp. CC9605]
Length = 424
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 147/254 (57%), Gaps = 8/254 (3%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
+R + ++ F E F +AL D N+ +GT +KGTV ++ G VDI K+
Sbjct: 121 QRNQPRSVDDFDFDEEAFLAAL---DENAPVGTTGEVIKGTVIGIESDGVYVDIGGKAPG 177
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
Y+P EA + + + E GL+ E ++ E AD + +S R ++ +W+R ++L+
Sbjct: 178 YMPKSEAGLGVVTNFRER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWDRVKELE 236
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
+ VV+ V N+GGV +++GLRGF+P SQ+ + +EL+GK L + F+EV+ E
Sbjct: 237 KQGKVVQVIVNNFNRGGVTCDLQGLRGFIPRSQLQNGENHQELVGKTLGVAFIEVNSETR 296
Query: 246 RLVLS-NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS R A+A+ L +G +V G V ++KPYG FID+GGI+GLLH S I++ R+ I
Sbjct: 297 KLVLSEKRAAVAERFQDLEVGQLVEGQVAAVKPYGLFIDLGGISGLLHQSAITNGRLRSI 356
Query: 305 ATVLQPGDTLKVCL 318
V GD + +
Sbjct: 357 REVFDQGDRVSALI 370
>gi|260436360|ref|ZP_05790330.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
gi|260414234|gb|EEX07530.1| SSU ribosomal protein S1P [Synechococcus sp. WH 8109]
Length = 390
Score = 155 bits (392), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 8/254 (3%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
+R + ++ F E F +AL D N+ +GT +KGTV ++ G VDI K+
Sbjct: 87 QRNQPRSVDDFDFDEEAFLAAL---DENAPVGTTGEVIKGTVIGIESDGVYVDIGGKAPG 143
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
Y+P EA + + + E GL+ E ++ E AD + +S R ++ +W+R ++L
Sbjct: 144 YMPKSEAGLGVVTNFRER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWDRVKELD 202
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
+ VV+ V G N+GGV ++EGLRGF+P SQ+ + +E +GK L + F+EV+ E
Sbjct: 203 KQGKVVQVIVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHQEFVGKTLGVAFIEVNSETR 262
Query: 246 RLVLS-NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS R A+A+ L +G +V G V ++KPYG FID+GGI+GLLH S I++ + I
Sbjct: 263 KLVLSEKRAAVAERFQDLEVGQLVEGQVAAVKPYGLFIDLGGISGLLHQSAITNGSLRSI 322
Query: 305 ATVLQPGDTLKVCL 318
V GD + +
Sbjct: 323 REVFDQGDRVSALI 336
>gi|406982823|gb|EKE04093.1| Ribosomal protein S1 [uncultured bacterium]
Length = 423
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 150/243 (61%), Gaps = 12/243 (4%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
L EF LEKY +N + G VKG V ++ G LVDI AK++A++P +E K+ +E
Sbjct: 17 LTEFEKLLEKYGYNFKKGDLVKGKVIGYESNGLLVDIGAKTAAFVPCKEVSNIYTKNPQE 76
Query: 143 A-GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
GI G ++EF+II E + D L LSL+ + +W++ L++ED VV+G+V KG
Sbjct: 77 VVGI--GEEKEFLIIREEDEDGKLTLSLKKVASAYSWKQLEDLKNEDAVVEGEVTAVVKG 134
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261
G++ +V GLRGFVP S + ++ E L+G+ + LK + VD +Q+ L+LS+RK +++ QA+
Sbjct: 135 GILVDVLGLRGFVPSSHVRTRDI-ESLIGEKIQLKILSVDSQQNNLILSHRKVVSEQQAE 193
Query: 262 --------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ +G VV G V L +GAFIDIGGI+GLL +SQ+S V A +L G+
Sbjct: 194 NRKDVFERIEVGLVVEGEVVRLADFGAFIDIGGIDGLLPLSQMSWRWVDHPADILTVGNK 253
Query: 314 LKV 316
+ V
Sbjct: 254 INV 256
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 9/104 (8%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G +P SQ+S + +G + ++ + +D ++ R+ LS + D
Sbjct: 219 GAFIDIGGIDGLLPLSQMSWRWVDHPADILTVGNKINVEIIGIDHDKQRVSLSLKSQQPD 278
Query: 258 SQAQ----LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQI 296
+ + G + GTV +K +GAFI++ GI LL ++
Sbjct: 279 PWDEAANVIKEGEKITGTVIRIKHFGAFIEVYPGIEALLPYKEV 322
>gi|16330820|ref|NP_441548.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|383322562|ref|YP_005383415.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|383325731|ref|YP_005386584.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|383491615|ref|YP_005409291.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|384436882|ref|YP_005651606.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|451814978|ref|YP_007451430.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|2500386|sp|P74142.1|RS1B_SYNY3 RecName: Full=30S ribosomal protein S1 homolog B
gi|1653313|dbj|BAA18228.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|339273914|dbj|BAK50401.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
gi|359271881|dbj|BAL29400.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. GT-I]
gi|359275051|dbj|BAL32569.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-N]
gi|359278221|dbj|BAL35738.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803 substr. PCC-P]
gi|407961822|dbj|BAM55062.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|451780947|gb|AGF51916.1| 30S ribosomal protein S1 [Synechocystis sp. PCC 6803]
Length = 305
Score = 155 bits (391), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 138/240 (57%), Gaps = 2/240 (0%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F+L+EF AL+K+D+++E G V G + N G VD KS ++P QE +
Sbjct: 9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAE 68
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+E++ + +F++ E + + LS R +Q + +WE +L+ ++ V G N
Sbjct: 69 IEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTN 127
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADS 258
KGGVV +VEGLRGF+P S + K + L+G+ L +E +++ ++LVL+ R+ A+S
Sbjct: 128 KGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAES 187
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V +
Sbjct: 188 MGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYV 247
>gi|148238988|ref|YP_001224375.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
gi|147847527|emb|CAK23078.1| 30S ribosomal protein S1 [Synechococcus sp. WH 7803]
Length = 403
Score = 154 bits (390), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/233 (38%), Positives = 136/233 (58%), Gaps = 5/233 (2%)
Query: 90 LEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
L D N +GT V GTV ++ G VDI K+ ++P E + I +++E
Sbjct: 118 LAALDENEPVGTTGDVVTGTVIGMESDGVYVDIGGKAPGFMPKSECGLGVITNLKER-FP 176
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAE 206
GL+ E ++ E AD + +S R + +W++ +QL+ E V + KV G N+GGV +
Sbjct: 177 KGLEIEVLVTREQNADGMVTISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCD 236
Query: 207 VEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-AQLGIG 265
+EGLRGF+P SQ+ E L+GK L + F+EV+ E +LVLS +KA ++ A+L +G
Sbjct: 237 LEGLRGFIPRSQLQEGENHEALVGKTLGVAFLEVNPETRKLVLSEKKAATAARFAELEVG 296
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+V G V ++KPYG FID+GGI+GLLH S I+ + + V GDT+K +
Sbjct: 297 QLVEGHVAAVKPYGLFIDLGGISGLLHQSMITGGSLRSLREVFDQGDTVKALI 349
>gi|409991308|ref|ZP_11274581.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
gi|291567299|dbj|BAI89571.1| 30S ribosomal protein S1 [Arthrospira platensis NIES-39]
gi|409937828|gb|EKN79219.1| RNA-binding S1 domain-containing protein [Arthrospira platensis
str. Paraca]
Length = 294
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/242 (34%), Positives = 144/242 (59%), Gaps = 5/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIK 138
SF++++F ALE +D++ + G V G VF D+ GA ++I KS +LP E
Sbjct: 7 SFSIDDFAKALEAHDYDLQKGQIVTGRVFEYDSNGAYIEIKGGKSPGFLPMSEISFTAGD 66
Query: 139 HVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E I+P G ++EF+II + +D ++LSLR +Q E AW+ + ++ +V G
Sbjct: 67 NLSE--ILPLGEEQEFLIIRDQNSDGQVLLSLRQLQVEKAWDNLSETSENSESLQVRVTG 124
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
N+GGV +V+ LRGF+P S + + E L+G+ + + +E + ++ +LVLS R A +
Sbjct: 125 VNRGGVTVDVDCLRGFIPRSHLLDRENLEALVGETITVTIIEFNRDRQKLVLSQRMASQS 184
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S +QL +G +V GTV S+KP+G FI++ G+ GL+H+ ++S V + + G T+K
Sbjct: 185 VSFSQLQVGQLVEGTVGSIKPFGVFIELEGVTGLIHIKEVSQKYVGSLPDIFTLGQTVKA 244
Query: 317 CL 318
+
Sbjct: 245 LV 246
>gi|170078958|ref|YP_001735596.1| 30S ribosomal protein S1 [Synechococcus sp. PCC 7002]
gi|169886627|gb|ACB00341.1| 30S ribosomal protein S1 like protein [Synechococcus sp. PCC 7002]
Length = 296
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 142/245 (57%), Gaps = 3/245 (1%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P ++F++++F AL ++D+ E G V G +F + G LVDI KS + P ++A +
Sbjct: 5 PNPAIAFSMDDFEHALTEHDYQFEQGQVVTGKIFEHLSDGVLVDIGGKSPGFSPLRDALL 64
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
A V G EF+I+ A+ + LS R + + WE Q V+ +
Sbjct: 65 AGETDAHTALPV-GENVEFLIVRGQNAEGQVTLSRRKLAEQRVWEDLAQAAEAGNSVQMR 123
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR-K 253
V G+N+GGV +++GLRGF+P S + K+ ++L+G+ L + F+E D+E+ +LVLS R
Sbjct: 124 VTGSNRGGVTGDIQGLRGFIPNSHLVDKNI-DDLMGQLLTVNFLEFDQERRKLVLSQRYA 182
Query: 254 AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
A A+ +L IG++V GTV ++KPYG F+++ G+ GLLH SQIS V I + G T
Sbjct: 183 AQAEVMRRLSIGALVSGTVVNIKPYGVFVELDGMTGLLHRSQISAKPVEQIEALFSIGQT 242
Query: 314 LKVCL 318
++V +
Sbjct: 243 VRVLI 247
>gi|78185204|ref|YP_377639.1| RNA binding S1 [Synechococcus sp. CC9902]
gi|78169498|gb|ABB26595.1| SSU ribosomal protein S1P [Synechococcus sp. CC9902]
Length = 412
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 8/254 (3%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
+R ++ F E F +AL D N+ +GT +KGTV ++ G VDI K+
Sbjct: 109 QRSEPRSVDDFDFDEEAFLAAL---DENAPVGTTGEVIKGTVIALESDGVYVDIGGKAPG 165
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
++P EA + I + +E GL+ E ++ E AD + +S R ++ +W++ + L+
Sbjct: 166 FMPKSEAGLGVITNYQER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWDKVKVLE 224
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
E VV+ V G N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+
Sbjct: 225 KEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSGTR 284
Query: 246 RLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS ++A ++ Q L +G +V G V S+KPYG FID+GGI+GLLH S I++ + I
Sbjct: 285 KLVLSEKRAATAARFQELEVGQLVEGLVASVKPYGLFIDLGGISGLLHQSSITNGSLRSI 344
Query: 305 ATVLQPGDTLKVCL 318
V GD + +
Sbjct: 345 REVFDQGDRVSALI 358
>gi|119485419|ref|ZP_01619747.1| RNA binding S1 [Lyngbya sp. PCC 8106]
gi|119457175|gb|EAW38301.1| RNA binding S1 [Lyngbya sp. PCC 8106]
Length = 295
Score = 154 bits (389), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/242 (33%), Positives = 144/242 (59%), Gaps = 5/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIK 138
SF+L++F ALE++D++ + G V+G VF + G +DI KS +LP +EA + ++
Sbjct: 7 SFSLDDFARALEQHDYDLQKGQVVRGQVFEYTSDGVYIDILGGKSPGFLPRKEASLADVE 66
Query: 139 HVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E I+P +E EF++I E A+ ++LS+R ++ E W+R + Q + + +V G
Sbjct: 67 DLSE--ILPLQEEREFLVIREQNAEGQVLLSIRQLELEKVWDRLNESQQQAQSFQVRVTG 124
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GGV + + LRGF+P S +S K L+ + L + +E+D ++++LV S R A
Sbjct: 125 MNRGGVTVDFDSLRGFIPRSHLSEKEDLNSLIDQLLTVHILELDRDRNKLVFSQRLASES 184
Query: 258 -SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S QL +G ++ G V S+KP+G F+D+ G+ GL+H+ ++S + + T+ G +K
Sbjct: 185 VSFGQLEVGQLIEGKVSSVKPFGVFVDLDGVTGLIHIKEVSQKYIESLPTLFPVGQAVKA 244
Query: 317 CL 318
+
Sbjct: 245 LV 246
>gi|86605910|ref|YP_474673.1| 30S ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
gi|86554452|gb|ABC99410.1| putative ribosomal protein S1 [Synechococcus sp. JA-3-3Ab]
Length = 304
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 143/243 (58%), Gaps = 8/243 (3%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F+ E+F ALE + G V+G +F N GALVDI KS A+LP +EA I +
Sbjct: 13 TFSSEDFAKALEAQSLDFRPGQVVRGRIFQHQNDGALVDIGGKSPAFLPLKEAGIRSGED 72
Query: 140 VEEAGIVPGLKEE--FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ E + P LK E F+I+ E+ ++ +VLS R ++ + WE + Q+ V V+G
Sbjct: 73 LSE--LFP-LKSEADFLILRED-SEGQIVLSARRLRLKRLWEELAEKQTNGQTVTALVIG 128
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
NKGGV+ +V+GLRGF+P S ++ + EEL+G+ L +EV+ ++LVLS R A A
Sbjct: 129 TNKGGVLVDVQGLRGFIPRSHLNQRENLEELVGQSLTASLLEVNPAANKLVLSQRVARQA 188
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+S G VV G V +LKP+G F+++ G +GLL + Q+S VA ++ + QPG LK
Sbjct: 189 ESLGIYTTGQVVRGKVSALKPFGVFVELEEGGSGLLPIKQVSQSFVASLSDLFQPGQPLK 248
Query: 316 VCL 318
+
Sbjct: 249 AVV 251
>gi|116072199|ref|ZP_01469466.1| RNA binding S1 [Synechococcus sp. BL107]
gi|116064721|gb|EAU70480.1| RNA binding S1 [Synechococcus sp. BL107]
Length = 412
Score = 153 bits (387), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 145/254 (57%), Gaps = 8/254 (3%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
+R ++ F E F +AL D N+ +GT +KGTV ++ G VDI K+
Sbjct: 109 QRSEPRSVDDFDFDEEAFLAAL---DENAPVGTTGEVIKGTVIALESDGVYVDIGGKAPG 165
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
++P EA + I + +E GL+ E ++ E AD + +S R ++ +W++ + L+
Sbjct: 166 FMPKSEAGLGVITNYQER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWDKVKVLE 224
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
E VV+ V G N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+
Sbjct: 225 KEGKVVQVIVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSGTR 284
Query: 246 RLVLSNRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS ++A ++ Q L +G +V G V S+KPYG FID+GGI+GLLH S I++ + I
Sbjct: 285 KLVLSEKRASVAARFQELEVGQLVDGLVASVKPYGLFIDLGGISGLLHQSAITNGSLRSI 344
Query: 305 ATVLQPGDTLKVCL 318
V GD + +
Sbjct: 345 REVFDEGDRVSALI 358
>gi|220909013|ref|YP_002484324.1| RNA-binding S1 domain-containing protein [Cyanothece sp. PCC 7425]
gi|219865624|gb|ACL45963.1| RNA binding S1 domain protein [Cyanothece sp. PCC 7425]
Length = 292
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 139/241 (57%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
SF+ ++F ALE++ ++ E+G V+G V D+ GA +DI KS+A+LP E + K
Sbjct: 3 SFSHDDFLRALEQHGYSFEVGQTVRGKVVNLDSDGAYIDIGGKSTAFLPAHEVLVPPGKK 62
Query: 140 VEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ A ++P + +F+II +A+ + LSL+ ++ + WER + LQ + +V G
Sbjct: 63 L--ADVLPLRSDRDFLIIRGQDAEGQISLSLKRLEIKALWERYQSLQESQGAIDVRVTGV 120
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKGG+ + +G+RGF+P + + T E L+G+ L + +E D E+ RLV S + A
Sbjct: 121 NKGGLTVDAKGIRGFIPRTHVVGAETLESLVGQTLTVTILEADPERKRLVCSQKIARRQQ 180
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ Q G +V GTV+ ++PYG ID+ G+ GLLH++ S RV + +Q G +K
Sbjct: 181 RLQEFDYGQLVQGTVRDIRPYGLMIDLTGVLGLLHINDFSEKRVGSLQAHVQVGTPIKAI 240
Query: 318 L 318
+
Sbjct: 241 V 241
>gi|33866272|ref|NP_897831.1| 30S ribosomal protein S1 homolog B, Nbp1 [Synechococcus sp. WH
8102]
gi|33639247|emb|CAE08255.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Synechococcus
sp. WH 8102]
Length = 406
Score = 152 bits (385), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/243 (37%), Positives = 143/243 (58%), Gaps = 8/243 (3%)
Query: 80 SFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
F E F +AL D N+ +GT V+GTV ++ G VDI K+ ++P EA +
Sbjct: 114 DFDEEAFLAAL---DENAPVGTTGDVVQGTVIGLESDGIYVDIGGKAPGFMPKSEAGLGV 170
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
I ++ E GL+ E ++ E AD + +S R ++ +W++ ++L+ VV+ V
Sbjct: 171 ITNLGER-FPKGLQVEVLVTREQNADGMVTISCRALELRKSWDKVKELEKHGKVVQVIVN 229
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+ E +LVLS ++A
Sbjct: 230 GFNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSETRKLVLSQKRAAV 289
Query: 257 DSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
++ Q L +G +V G V ++KPYG FID+GGI+GLLH S I++ + I V GD ++
Sbjct: 290 AARFQELEVGQLVEGVVAAVKPYGLFIDLGGISGLLHQSSITNGSLRSIREVFDQGDRVQ 349
Query: 316 VCL 318
+
Sbjct: 350 ALI 352
>gi|90994536|ref|YP_537026.1| 30S ribosomal protein S1 [Pyropia yezoensis]
gi|90819100|dbj|BAE92469.1| 30S ribosomal protein S1 [Pyropia yezoensis]
Length = 227
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/219 (35%), Positives = 131/219 (59%), Gaps = 4/219 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKH 139
FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ + +
Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNN 67
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ + G N
Sbjct: 68 FTSLNIND--TREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFN 125
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADS 258
KGG++ +EG+ GFVP S + + +E+ K + LK + V+E+ + L+LS+R+A+ + +
Sbjct: 126 KGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQA 185
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+ L +G+++ G + + PYG FI +G + GL+H+S+I+
Sbjct: 186 SSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEIN 224
>gi|88807700|ref|ZP_01123212.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
gi|88788914|gb|EAR20069.1| hypothetical protein WH7805_14153 [Synechococcus sp. WH 7805]
Length = 430
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 87/233 (37%), Positives = 136/233 (58%), Gaps = 5/233 (2%)
Query: 90 LEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
L D N +GT V GTV ++ G VDI K+ ++P E + I +++E
Sbjct: 145 LAALDENEPIGTTGEVVTGTVIGMESDGVYVDIGGKAPGFMPKSECGLGVITNLKER-FP 203
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAE 206
GL+ + ++ E AD + +S R + +W++ +QL+ E V + KV G N+GGV +
Sbjct: 204 KGLEIQVLVTREQNADGMVTISCRALALRQSWDKVKQLEKEGKVAQVKVSGFNRGGVTCD 263
Query: 207 VEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-AQLGIG 265
+EGLRGF+P SQ+ E L+GK L + F+EV+ + +LVLS +KA ++ A+L +G
Sbjct: 264 LEGLRGFIPRSQLQDGENHEALVGKTLGVAFLEVNPDTRKLVLSEKKAATAARFAELEVG 323
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+V G V ++KPYG FID+GGI+GLLH S I+ + I V GD++K +
Sbjct: 324 QLVEGHVAAVKPYGLFIDLGGISGLLHQSMITGGSLRSIREVFDHGDSVKALI 376
>gi|90655539|gb|ABD96378.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O12]
Length = 408
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/242 (36%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 81 FTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
F E F +AL D N+ +GT V+GTV ++ G VDI K+ ++P EA + I
Sbjct: 117 FDEEAFLAAL---DENAPIGTTGDVVEGTVIGLESDGIYVDIGGKAPGFMPKSEAGLGVI 173
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E GL+ + ++ E AD + +S R ++ +W++ ++ + E VV+ V G
Sbjct: 174 TNLSER-FPKGLRVQVLVTREQNADGMVTISCRALELRKSWDKVKEFEKEGKVVQVVVNG 232
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+ E +LVLS ++A
Sbjct: 233 FNRGGVTCDLEGLRGFIPRSQLEDGENHQELVGKTLGVAFIEVNSETRKLVLSQKRAAVA 292
Query: 258 SQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ Q L +G +V G V ++KPYG FID+GGI+GLLH S I++ + I V G+ ++
Sbjct: 293 ARFQELEVGQLVEGVVAAVKPYGLFIDLGGISGLLHQSAITNGSLRSIREVFDQGERVQA 352
Query: 317 CL 318
+
Sbjct: 353 LI 354
>gi|90655490|gb|ABD96330.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3O6]
Length = 408
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/243 (36%), Positives = 144/243 (59%), Gaps = 8/243 (3%)
Query: 80 SFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
F E F +AL D N+ +GT V+GTV ++ G VDI K+ ++P EA +
Sbjct: 116 DFDEEAFLAAL---DENAPVGTTGDVVQGTVIGLESDGIYVDIGGKAPGFMPKSEAGLGV 172
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
I ++ E GL+ E ++ E AD + +S R ++ +W++ ++L+ + VV+ V
Sbjct: 173 ITNLGER-FPKGLQVEVLVTREQNADGMVTISCRALELRKSWDKVKELEKQGKVVQVIVN 231
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+ E +LVLS ++A
Sbjct: 232 GFNRGGVTCDLEGLRGFIPRSQLQEGDNHQELVGKTLGVAFIEVNSETRKLVLSQKRAAV 291
Query: 257 DSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
++ Q L +G +V G V ++KPYG FID+GGI+GLLH S I++ + I V G+ ++
Sbjct: 292 AARFQELEVGQLVEGVVAAVKPYGLFIDLGGISGLLHQSSITNGSLRSIREVFDQGERVQ 351
Query: 316 VCL 318
+
Sbjct: 352 ALI 354
>gi|90655436|gb|ABD96277.1| 30S ribosomal protein S1 homolog B [uncultured marine type-A
Synechococcus GOM 3M9]
Length = 423
Score = 152 bits (383), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 91/243 (37%), Positives = 140/243 (57%), Gaps = 8/243 (3%)
Query: 80 SFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK 136
F E F +AL D N+ +GT + G V ++ G VDI K+ ++P EA +
Sbjct: 131 DFDEEAFLAAL---DENAPVGTTGEVITGKVIGLESDGVYVDIGGKAPGFMPKSEAGLGV 187
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
I + E GL+ E ++ E AD + +S R + +WER ++++ + VV+ V
Sbjct: 188 ITNFRER-FPKGLEVEVLVTREQNADGMVTISCRALALRKSWERVKEMEKQGKVVQVIVN 246
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLS-NRKAM 255
G N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+ E +LVLS R A+
Sbjct: 247 GFNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFLEVNSETRKLVLSEKRAAV 306
Query: 256 ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
A ++L +G +V G V ++KPYG FID+GGI+GLLH S I++ + I V GD +K
Sbjct: 307 AARFSELEVGQLVEGQVAAVKPYGLFIDLGGISGLLHQSMITNGSLRSIREVFDQGDRVK 366
Query: 316 VCL 318
+
Sbjct: 367 AMI 369
>gi|82799326|gb|ABB92252.1| 30S ribosomal protein S1-like protein B [uncultured marine type-A
Synechococcus 5B2]
Length = 411
Score = 151 bits (382), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 143/242 (59%), Gaps = 8/242 (3%)
Query: 81 FTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
F E F +AL D N+ +GT ++GTV ++ G VDI K+ ++P EA + +
Sbjct: 120 FDEEAFLAAL---DENAPVGTTGDVIQGTVIGLESDGIYVDIGGKAPGFMPKSEAGLGVV 176
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E GL+ E ++ E AD + +S R ++ +W++ ++L+ + VV+ V G
Sbjct: 177 TNLRER-FPKGLQVEVLVTREQNADGMVTISCRALELRKSWDKVKELEKQGKVVQVIVNG 235
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GGV ++EGLRGF+P SQ+ +EL+GK L + F+EV+ E +LVLS ++A
Sbjct: 236 FNRGGVTCDLEGLRGFIPRSQLQDGENHQELVGKTLGVAFIEVNSETRKLVLSEKRAAIA 295
Query: 258 SQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ Q L IG +V G V ++KPYG FID+GGI+GLLH S I++ + I V GD +
Sbjct: 296 ARFQELEIGQLVEGLVAAVKPYGLFIDLGGISGLLHQSAITNGSLRSIREVFDQGDRVHA 355
Query: 317 CL 318
+
Sbjct: 356 LI 357
>gi|352094717|ref|ZP_08955888.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
gi|351681057|gb|EHA64189.1| RNA binding S1 domain protein [Synechococcus sp. WH 8016]
Length = 433
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 139/241 (57%), Gaps = 4/241 (1%)
Query: 81 FTLEE--FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
F +E F +AL+ + G V GTV ++ G VDI K+ ++P E + I
Sbjct: 140 FDFDEGAFLAALDANEPVGTTGEVVTGTVIGMESDGVYVDIGGKAPGFMPKNECGLGVIT 199
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+++E GL+ E ++ E AD + +S R + +W++ +QL+ E V + KV G
Sbjct: 200 NLKER-FPKGLEIEVLVTREQNADGMVTISCRALALRQSWDKVKQLEKEGRVSQVKVTGF 258
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GGV ++EGLRGF+P SQ+ E L+GK L + F+EV+ E +LVLS ++A +
Sbjct: 259 NRGGVTCDLEGLRGFIPRSQLQDGENHEALVGKTLGVAFLEVNSETRKLVLSEKRAATAA 318
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ ++L +G +V G V ++KPYG F+D+GGI+GLLH S I+ + + + GD +K
Sbjct: 319 RFSELEVGQLVEGHVAAIKPYGLFVDLGGISGLLHQSAITGGSMRSMREIFDQGDAVKAL 378
Query: 318 L 318
+
Sbjct: 379 I 379
>gi|209522969|ref|ZP_03271526.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|423062381|ref|ZP_17051171.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
gi|209496556|gb|EDZ96854.1| RNA binding S1 domain protein [Arthrospira maxima CS-328]
gi|406716289|gb|EKD11440.1| 30S ribosomal protein S1 [Arthrospira platensis C1]
Length = 294
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 83/242 (34%), Positives = 143/242 (59%), Gaps = 5/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIK 138
SF++++F ALE +D++ + G V G VF D+ GA ++I KS +LP E
Sbjct: 7 SFSIDDFAKALEAHDYDLQKGQIVTGRVFEYDSNGAYIEIKGGKSPGFLPMSEISFTAGD 66
Query: 139 HVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E I+P G ++EF+II + +D ++LSLR +Q E AW+ ++ ++ V G
Sbjct: 67 NLSE--ILPLGEEQEFLIIRDQNSDGQVLLSLRKLQVEKAWDHLSEISENSESLQVVVTG 124
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
N+GGV + + LRGF+P S + + E L+G+ + + +E + ++ +LVLS R A +
Sbjct: 125 VNRGGVTVDADCLRGFIPRSHLLVRDNLEALVGETITVTVLEFNRDREKLVLSQRMASQS 184
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S +QL +G +V GTV S+KP+G FI++ G+ GL+H+ ++S V + + G T+K
Sbjct: 185 VSFSQLQVGQLVEGTVGSIKPFGVFIELEGVTGLIHIKEVSQKYVGSLPDIFTIGQTVKA 244
Query: 317 CL 318
+
Sbjct: 245 LV 246
>gi|113954120|ref|YP_731196.1| ribosomal protein S1 [Synechococcus sp. CC9311]
gi|113881471|gb|ABI46429.1| Ribosomal protein S1 [Synechococcus sp. CC9311]
Length = 401
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 139/241 (57%), Gaps = 4/241 (1%)
Query: 81 FTLEE--FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
F +E F +AL+ + G V GTV ++ G VDI K+ ++P E + I
Sbjct: 108 FDFDEGAFLAALDANEPVGTTGEVVTGTVIGMESDGVYVDIGGKAPGFMPKNECGLGVIT 167
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+++E GL+ E ++ E AD + +S R + +W++ +QL+ + V + KV G
Sbjct: 168 NLKER-FPKGLEIEVLVTREQNADGMVTISCRALALRQSWDKVKQLEKDGRVSQVKVTGF 226
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GGV ++EGLRGF+P SQ+ E L+GK L + F+EV+ E +LVLS ++A +
Sbjct: 227 NRGGVTCDLEGLRGFIPRSQLQDGENHETLVGKTLGVAFLEVNSETRKLVLSEKRAATAA 286
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ ++L IG +V G V ++KPYG F+D+GGI+GLLH S I+ + + + GD +K
Sbjct: 287 RFSELEIGQLVEGHVAAIKPYGLFVDLGGISGLLHQSAITGGSMRSMREIFDQGDAVKAL 346
Query: 318 L 318
+
Sbjct: 347 I 347
>gi|116075332|ref|ZP_01472592.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
gi|116067529|gb|EAU73283.1| hypothetical protein RS9916_27269 [Synechococcus sp. RS9916]
Length = 439
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 144/253 (56%), Gaps = 2/253 (0%)
Query: 67 AYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY 126
A R+ ++ F E F +AL++ + G V GTV ++ G VDI K+ +
Sbjct: 134 AQPAARSRSVDDFDFDEEAFLAALDENEPVGTTGDVVHGTVIGLESDGVYVDIGGKAPGF 193
Query: 127 LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+P E + I +++E GL+ + ++ E AD + +S R + +W++ + L+
Sbjct: 194 MPKSECGLGVITNLKER-FPKGLEIDVLVTREQNADGMVTISCRALALRQSWDKVKVLEK 252
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
E VV+ KV G N+GGV ++EGLRGF+P SQ+ E L+GK L + F+EV+ E +
Sbjct: 253 EGKVVQVKVSGFNRGGVTCDLEGLRGFIPRSQLQDGENHESLVGKTLGVAFLEVNSETRK 312
Query: 247 LVLSNRKAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
LVLS ++A ++ ++L +G +V G V ++KPYG F+D+GGI+GLLH S I+ + +
Sbjct: 313 LVLSEKRAATAARFSELEVGQLVEGHVVAVKPYGFFVDLGGISGLLHQSVITGGSLRSLR 372
Query: 306 TVLQPGDTLKVCL 318
V GD +K +
Sbjct: 373 EVFDHGDLVKALI 385
>gi|87302523|ref|ZP_01085340.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
gi|87282867|gb|EAQ74824.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp. WH
5701]
Length = 403
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 83/232 (35%), Positives = 137/232 (59%), Gaps = 2/232 (0%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+AL++ + G V GTV +++ G +DI K+ ++P EA + I +++E
Sbjct: 119 AALDENEPVGATGDVVTGTVISSESDGVYIDIGGKAPGFMPKAEAGLGVIGNLKER-FPK 177
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
G E ++ E AD + +S R + +WE+ +QL++ VV+ KV G N+GGV ++
Sbjct: 178 GQPVEVLVTREQNADGMVTISARALALRQSWEKVKQLEAAGKVVQVKVSGFNRGGVTCDL 237
Query: 208 EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGIGS 266
EGLRGF+P SQ+ + E+L+G + F+EV+ + +LVLS ++A + S A+L +G
Sbjct: 238 EGLRGFIPRSQLQNGENHEQLVGTSFAVAFLEVNADTRKLVLSEKRAASASLLAELEVGQ 297
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+V G V S+KPYG F+D+GG++GLLH S I+ + DI G+ LK +
Sbjct: 298 LVDGQVVSVKPYGFFVDLGGVSGLLHQSSITGVHLRDIREAFSQGERLKALV 349
>gi|318041061|ref|ZP_07973017.1| small subunit ribosomal protein S1 [Synechococcus sp. CB0101]
Length = 424
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 87/226 (38%), Positives = 132/226 (58%), Gaps = 2/226 (0%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
+F G GTV ++ G VDI K+ ++P +E + I +++E G + E
Sbjct: 146 EFVGTTGEVAVGTVVGLESDGVYVDIGGKAPGFMPKKECGLGVITNLKER-FPRGTEVEV 204
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ E AD + +S R + +WE+ R L+ E V++ KV G N+GGV A+VEGLRGF
Sbjct: 205 LVTREQNADGMVTVSARALALRQSWEKVRALEKEGKVLQVKVNGFNRGGVTADVEGLRGF 264
Query: 214 VPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGIGSVVIGTV 272
+P SQ+ E L+GK L + F+EV+ E +LVLS +KA + Q L +G +V G V
Sbjct: 265 IPRSQLQEGENHEALVGKTLGVAFLEVNPETRKLVLSEKKAATAAIFQNLEVGQLVEGQV 324
Query: 273 QSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
S+KPYG F+D+GGI+GLLH S I+ ++ D+ V GD +K +
Sbjct: 325 VSVKPYGLFVDLGGISGLLHQSVITGGQMRDLREVFGQGDRVKALI 370
>gi|427701380|ref|YP_007044602.1| 30S ribosomal protein S1 [Cyanobium gracile PCC 6307]
gi|427344548|gb|AFY27261.1| ribosomal protein S1 [Cyanobium gracile PCC 6307]
Length = 395
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/242 (38%), Positives = 140/242 (57%), Gaps = 8/242 (3%)
Query: 81 FTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
F E F +AL D N+ +GT V+G V ++ G VDI K+ ++P E + I
Sbjct: 104 FDEEAFLAAL---DENAPVGTTGEVVQGVVIGMESDGVYVDIGGKAPGFMPKSECGLGVI 160
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+++E GL E ++ E AD + +S R + +WE+ RQL+ E VV+ +V G
Sbjct: 161 TNLKER-FPKGLPIEVLVTREQNADGMVTISARALALRQSWEKVRQLEKEGKVVQVRVNG 219
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR-KAMA 256
N+GGV ++EGLRGF+P SQ++ E L+G+ L + F+EV+ E +LVLS + A A
Sbjct: 220 FNRGGVTCDLEGLRGFIPRSQLNEGENHEALVGQTLGVAFLEVNAETRKLVLSEKRAATA 279
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
A L +G +V G V S+KPYG F+D+GG++GLLH S I+ + D+ Q G+ LK
Sbjct: 280 ARFATLEVGQLVEGQVVSIKPYGFFVDLGGVSGLLHQSSITGGALRDLREAFQQGEHLKA 339
Query: 317 CL 318
+
Sbjct: 340 LI 341
>gi|376001762|ref|ZP_09779618.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
gi|375329874|emb|CCE15371.1| 30S ribosomal protein S1 [Arthrospira sp. PCC 8005]
Length = 294
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 143/242 (59%), Gaps = 5/242 (2%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIK 138
SF++++F ALE ++++ + G V G VF D+ GA ++I KS +LP E
Sbjct: 7 SFSIDDFAKALEAHNYDLQKGQIVTGRVFEYDSNGAYIEIKGGKSPGFLPMSEISFTAGD 66
Query: 139 HVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ E I+P G ++EF+II + +D ++LSLR +Q E AW+ ++ ++ V G
Sbjct: 67 NLSE--ILPLGEEQEFLIIRDQNSDGQVLLSLRKLQVEKAWDNLSEIAENSESLQVVVTG 124
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MA 256
N+GGV + + LRGF+P S + + E L+G+ + + +E + ++ +LVLS R A +
Sbjct: 125 VNRGGVTVDADCLRGFIPRSHLLVRDNLEALVGETITVTVLEFNRDREKLVLSQRMASQS 184
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S +QL +G +V GTV S+KP+G FI++ G+ GL+H+ ++S V + + G T+K
Sbjct: 185 VSFSQLQVGQLVEGTVGSIKPFGVFIELEGVTGLIHIKEVSQKYVGSLPDIFTIGQTVKA 244
Query: 317 CL 318
+
Sbjct: 245 LV 246
>gi|87123920|ref|ZP_01079770.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
gi|86168489|gb|EAQ69746.1| 30S ribosomal protein S1-like B, putative [Synechococcus sp.
RS9917]
Length = 432
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 135/233 (57%), Gaps = 5/233 (2%)
Query: 90 LEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
L D N +GT V GTV ++ G VDI K+ ++P E + I +++E
Sbjct: 147 LAALDANEPVGTTGEVVTGTVIGLESDGVYVDIGGKAPGFMPKSECGLGVITNLKER-FP 205
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAE 206
GL+ E ++ E AD + +S R + +W++ ++L+ + VV+ + G N+GGV +
Sbjct: 206 KGLEVEVLVTREQNADGMVTISCRALALRKSWDKVKELEKQGKVVQVTISGFNRGGVTCD 265
Query: 207 VEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-AQLGIG 265
+EGLRGF+P S + E L+GK L + F+EV+ E +LVLS ++A ++ A+L +G
Sbjct: 266 LEGLRGFIPRSHLQDGENHEALVGKTLGVAFLEVNAETRKLVLSEKRAATAARFAELEVG 325
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+V GTV ++KPYG F+D+GGI+GLLH S I+ + + V GD +K +
Sbjct: 326 QLVEGTVVAVKPYGFFVDLGGISGLLHQSMITGGSMRSLREVFDQGDAVKALI 378
>gi|33863501|ref|NP_895061.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9313]
gi|33640950|emb|CAE21408.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9313]
Length = 421
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 5/254 (1%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
E ++ P V + + L D N +GT G V ++ G VDI K+
Sbjct: 115 EEGQSNPARSVDDFDFDEDAFLAALDENEPIGTTGEVATGKVIALESDGVYVDIGGKAPG 174
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
++P E + I +++E GL+ E ++ E AD + +S R ++ +W + +Q++
Sbjct: 175 FMPKNECGLGVITNLKER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWSKVQQME 233
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
E V + KV G N+GGV ++EGLRGF+P SQ+ + E L+GK L + F+EV+ E
Sbjct: 234 KEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHEALIGKTLGVAFLEVNPETR 293
Query: 246 RLVLSNRKAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS ++A ++ ++L +G +V G V ++KPYG FID+GG++GLLH S I+ + +
Sbjct: 294 KLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFFIDLGGVSGLLHQSMITGGSLRSL 353
Query: 305 ATVLQPGDTLKVCL 318
V GD +K +
Sbjct: 354 REVFNQGDRVKALI 367
>gi|72383697|ref|YP_293052.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
gi|72003547|gb|AAZ59349.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. NATL2A]
Length = 431
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 136/232 (58%), Gaps = 2/232 (0%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+ALE+ G KG+V ++ G VDI K+ ++P E + I +++E
Sbjct: 137 AALEENQPIGTTGEIAKGSVIAVESDGIYVDIGGKAPGFMPKNECGLGVITNLKER-FPK 195
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
GLK E ++ E AD + +S R ++ +W++ + L E V++ K+ G N+GGV +
Sbjct: 196 GLKVEVLVTREQNADGMVTISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDF 255
Query: 208 EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQAQLGIGS 266
EGLRGF+P SQ+ + L+ K + F+EV+ E+ +LVLS +K A+A ++L IG
Sbjct: 256 EGLRGFIPRSQLEDGENHQSLVSKTISTAFLEVNPERRKLVLSEKKAAIASRFSELEIGQ 315
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++ G + ++KPYG F+D+ G++GLLH S +++ + + V QPG+++K +
Sbjct: 316 LIEGEILTIKPYGFFVDLRGVSGLLHHSMVTNGSMRSLREVFQPGESIKALI 367
>gi|159903074|ref|YP_001550418.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9211]
gi|159888250|gb|ABX08464.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9211]
Length = 416
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 137/244 (56%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
++ F E F AL + + G KG V ++ G VDI K+ ++P E +
Sbjct: 119 LDDFDFDEEAFLEALNENEPIGSTGEIAKGCVIGIESDGVYVDIGGKAPGFMPKNECGLG 178
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
I +++E GL+ E ++ E AD + +S R + +WE QL+ + V+ +
Sbjct: 179 VITNLKER-FPKGLEVEVLVTREQNADGMVTISCRALVLRKSWETVMQLEKDGKTVEVTI 237
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
G N+GGV ++EGLRGF+P SQ+ E L+GK L + F+EV+ + +L+LS +KA
Sbjct: 238 NGFNRGGVTCDLEGLRGFIPRSQLEQTENHESLVGKKLCVAFIEVNPDSRKLILSEKKAA 297
Query: 256 ADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
++ A+L IG +V G + ++KPYG F+D+GG++GLLH S I++ + + V G+++
Sbjct: 298 TAARFAELEIGQIVAGEILAIKPYGFFVDLGGVSGLLHQSMITNGSIRSLREVFSQGESI 357
Query: 315 KVCL 318
K +
Sbjct: 358 KALI 361
>gi|124025297|ref|YP_001014413.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. NATL1A]
gi|123960365|gb|ABM75148.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. NATL1A]
Length = 465
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 136/232 (58%), Gaps = 2/232 (0%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+ALE+ G KG+V ++ G VDI K+ ++P E + I +++E
Sbjct: 171 AALEENQPIGTTGEIAKGSVIAVESDGIYVDIGGKAPGFMPKNECGLGVITNLKER-FPK 229
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
GLK E ++ E AD + +S R ++ +W++ + L E V++ K+ G N+GGV +
Sbjct: 230 GLKVEVLVTREQNADGMVTISCRALELRKSWDKVQNLAKEGKVIRVKINGFNRGGVTCDF 289
Query: 208 EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADSQAQLGIGS 266
EGLRGF+P SQ+ + L+ K + F+EV+ E+ +LVLS +K A+A ++L IG
Sbjct: 290 EGLRGFIPRSQLEDGENHQSLVSKTISTAFLEVNPERRKLVLSEKKAAIASRFSELEIGQ 349
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++ G + ++KPYG F+D+ G++GLLH S +++ + + V QPG+++K +
Sbjct: 350 LIEGEILTIKPYGFFVDLRGVSGLLHHSMVTNGSMRSLREVFQPGESIKALI 401
>gi|434387366|ref|YP_007097977.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
gi|428018356|gb|AFY94450.1| ribosomal protein S1 [Chamaesiphon minutus PCC 6605]
Length = 297
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/240 (32%), Positives = 137/240 (57%), Gaps = 5/240 (2%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F++++F AL+ + E V+G + D+ G VDI KS A++P +E +
Sbjct: 12 FSMDDFAKALDAEAVSFEKDQLVRGKIHSYDSDGVYVDINGKSLAFVPAEEVAADE--SA 69
Query: 141 EEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+ + ++P G ++EF+II E AD + LS R +Q AW + +QS ++ +V G N
Sbjct: 70 DLSALLPIGDEQEFLIIREQNADGQVTLSKRQLQVRYAWNQVGDIQSNKESIQLRVTGVN 129
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
KGGV +G+RGF+P SQ+ + E L+G +P +E D+++++LV S R+A +
Sbjct: 130 KGGVTVNFQGIRGFIPRSQLVERDL-ESLVGTSIPGVIIEADKDKNKLVFSQRQATRTAN 188
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+QL +G +V GT+ +KP+GAF++ G GL+++ QIS +R+ + G +K +
Sbjct: 189 FSQLELGQLVTGTIVGIKPFGAFVEFNGNTGLIYIKQISQNRIEACEKLFTIGQEIKAMI 248
>gi|124022484|ref|YP_001016791.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. MIT 9303]
gi|123962770|gb|ABM77526.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9303]
Length = 481
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 5/254 (1%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSA 125
E ++ P V + + L D N +GT G V ++ G VDI K+
Sbjct: 175 EEGQSNPARSVDDFDFDEDAFLAALDENEPIGTTGEVATGKVIALESDGVYVDIGGKAPG 234
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
++P E + I +++E GL+ E ++ E AD + +S R ++ +W + +Q++
Sbjct: 235 FMPKNECGLGVITNLKER-FPKGLEVEVLVTREQNADGMVTISCRALELRKSWSKVQQME 293
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
E V + KV G N+GGV ++EGLRGF+P SQ+ + E L+GK L + F+EV+ E
Sbjct: 294 KEGKVAQVKVNGFNRGGVTCDLEGLRGFIPRSQLQNGENHEALVGKTLGVAFLEVNPETR 353
Query: 246 RLVLSNRKAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+LVLS ++A ++ ++L +G +V G V ++KPYG FID+GG++GLLH S I+ + +
Sbjct: 354 KLVLSEKRAATAARFSELEVGQLVEGQVVAVKPYGFFIDLGGVSGLLHQSMITGGSLRSL 413
Query: 305 ATVLQPGDTLKVCL 318
V GD +K +
Sbjct: 414 REVFNQGDRVKALI 427
>gi|406980774|gb|EKE02336.1| hypothetical protein ACD_20C00399G0021 [uncultured bacterium]
Length = 369
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 142/246 (57%), Gaps = 10/246 (4%)
Query: 80 SFTLEEFHSAL-EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
S L EF L + +D+N ++ VKGT+ + LVDI K+ AY+P +E +
Sbjct: 11 SENLSEFERLLRDSFDYNFKVADVVKGTIVKVEKNQLLVDIGGKTEAYIPYKEISNLPFE 70
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ E+ V +KE +++ ENE D L LSL+ + +W QL+ + ++ KV+
Sbjct: 71 NAEDIVSVGEVKEFYILREENE-DGQLTLSLKRVSQARSWTELEQLRQNEETIETKVISL 129
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
KGGV+ +V GLRGF+P SQ+ + + E L+G+D+P K +E D ++++L+LS R A+A+
Sbjct: 130 VKGGVLVKVLGLRGFIPSSQLRTGTPHEGLIGQDIPAKILEADPKRNKLILSQRLALAEE 189
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+ A L + +V G V + +GAFIDI GI+GLL +S++S RV + +L
Sbjct: 190 REKVVENVIASLHVDQLVEGEVVRIADFGAFIDINGIDGLLPISEMSWQRVKHPSDILSL 249
Query: 311 GDTLKV 316
G ++V
Sbjct: 250 GQHVQV 255
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 21/177 (11%)
Query: 160 EAD---DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVAEVEGL 210
EAD + L+LS R+ LA ER + +++ D +V+G+VV G ++ G+
Sbjct: 170 EADPKRNKLILSQRL---ALAEEREKVVENVIASLHVDQLVEGEVVRIADFGAFIDINGI 226
Query: 211 RGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQL 262
G +P S++S K ++ L LG+ + +K +++D E +R+ LS ++ + + Q
Sbjct: 227 DGLLPISEMSWQRVKHPSDILSLGQHVQVKVLKIDTELNRISLSLKRMEENPWVKIEGQF 286
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V + +GAFIDI G+ LL +++S ++ + L G ++V +
Sbjct: 287 EEGQVVKGIVNKITNFGAFIDIFPGVEALLPAAEMSDEQNINPFNELTVGQEIEVLI 343
>gi|159900230|ref|YP_001546477.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159893269|gb|ABX06349.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 397
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 88/255 (34%), Positives = 142/255 (55%), Gaps = 21/255 (8%)
Query: 83 LEEFHSALEKYDFN-SELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
++++ + L +YD+ E G +G V ++ LVDI AK +P Q+ + ++
Sbjct: 11 VQDWTTLLAEYDYQRPERGQLREGIVMRVEDSQILVDIGAKHEGVIPNQD--LRRLPPEL 68
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+GI G + ++ + LVLSL M+Q E W+ + + +++ VVG NKG
Sbjct: 69 VSGIKNGDTLQVYVMEPESKEGELVLSLNMVQVERDWQEAQTMLENGQIIEAGVVGYNKG 128
Query: 202 GVVAEVEGLRGFVPFSQI----------SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251
G++ +V +RGFVP SQ+ +S +++G+++PLK +EVD +++RLVLS
Sbjct: 129 GLLVQVGRVRGFVPASQVVNLHSRTGTEGQQSAMTKMVGQNIPLKVIEVDRDRNRLVLSE 188
Query: 252 RKAMA---DSQAQ-----LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
R AM SQ + L G+VV G V L P+GAFID+GG +GL H+S++S RV
Sbjct: 189 RAAMQRWRQSQKERLLETLEPGAVVTGRVNQLTPFGAFIDLGGADGLAHISELSWQRVNH 248
Query: 304 IATVLQPGDTLKVCL 318
VLQPG ++V +
Sbjct: 249 PREVLQPGQEVQVYV 263
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 22/154 (14%)
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGFV 214
+ LVLS R A +R RQ Q E + VV G+V G ++ G G
Sbjct: 182 NRLVLSERA-----AMQRWRQSQKERLLETLEPGAVVTGRVNQLTPFGAFIDLGGADGLA 236
Query: 215 PFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGS 266
S++S + + E+L G+++ + +EVD ++ R+ LS R+ D A + +G
Sbjct: 237 HISELSWQRVNHPREVLQPGQEVQVYVLEVDRDRERIGLSLRRLQPDPWATIDQRYDLGQ 296
Query: 267 VVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
+++G V ++ P+G F+ + G+ GL+H S+++ +
Sbjct: 297 LIVGEVTNIAPFGVFVRVEEGVEGLIHASELTEN 330
>gi|33239981|ref|NP_874923.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. marinus
str. CCMP1375]
gi|33237507|gb|AAP99575.1| Ribosomal protein S1 [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 417
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 84/244 (34%), Positives = 139/244 (56%), Gaps = 2/244 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
++ F EF +AL++ + G KG+V ++ G VDI K+ ++P E +
Sbjct: 121 VDDFDFDEGEFLAALDENEPVGNTGETAKGSVIGVESDGVYVDIGGKAPGFMPKSECGLG 180
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
I +++E GL+ E ++ E AD + +S R + +W++ QL E VV+ K+
Sbjct: 181 VITNLKER-FPKGLEVEVLVTREQNADGMVTISCRALALRKSWDKVIQLAKEAKVVEVKL 239
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN-RKA 254
G N+GGV ++EGLRGF+P SQ++ E L+GK + + F+EV + +L+LS + A
Sbjct: 240 NGFNRGGVTCDLEGLRGFIPRSQLNQGDDHESLVGKTINVAFIEVSPDNRKLILSEKKAA 299
Query: 255 MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
A A+L +G ++ G V S+KPYG F+D+GGI+GLLH S I++ + + V GD +
Sbjct: 300 TAAKFAELEVGQLIEGKVISVKPYGFFVDLGGISGLLHQSMITNGSLRSLREVFNQGDNV 359
Query: 315 KVCL 318
K +
Sbjct: 360 KALI 363
>gi|51209897|ref|YP_063561.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
gi|50657651|gb|AAT79636.1| 30S ribosomal protein S1 [Gracilaria tenuistipitata var. liui]
Length = 265
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 135/242 (55%), Gaps = 1/242 (0%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+ + F+ ++F + L +Y +N G + GTVF + +G LVD+ + YLP E +
Sbjct: 4 ISSIGFSEKDFGAILNQYSYNLHPGDIIAGTVFHKEAKGFLVDVGVNIAGYLPIDEVLLG 63
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
++ + EF I N+ L+LS++ + Y AW+R +QL++E++++ +
Sbjct: 64 SGYSNDDLMYLVNNTREFFIFAYNKERQQLLLSIKRLDYIKAWKRIKQLETEEIILHVPL 123
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
+ NKGG++ +EGL F+P S + + E ++ LP K + VDE+ ++++LS++ A+
Sbjct: 124 INFNKGGILTALEGLHSFIPRSHLILFNAYESMVRSYLPCKILLVDEKTNKIILSHKLAL 183
Query: 256 ADSQAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ L +G +V G + K YG F++I GI LLH+S+I ++ + +I V G +
Sbjct: 184 LYLYSDLLRVGRLVYGQIIQFKQYGIFLNIYGIPALLHISEIGYEYIDNIDCVFAIGHKI 243
Query: 315 KV 316
KV
Sbjct: 244 KV 245
>gi|194477334|ref|YP_002049513.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
gi|171192341|gb|ACB43303.1| 30S ribosomal protein S1-like B, putative [Paulinella
chromatophora]
Length = 368
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 140/251 (55%), Gaps = 12/251 (4%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTK-------VKGTVFCTDNRGALVDITAKSSAYLP 128
++ F E F +AL+K N +G+ V G + ++ G VDI K+ ++P
Sbjct: 68 VDDFDFDEETFLAALDK---NEPVGSNKKATNKTVNGIIVSIESDGIYVDIGDKAPGFMP 124
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 188
+E I I +++E + G E ++I E AD + +S R + +WE+ QL+ +
Sbjct: 125 KKECSIGAITNLKEF-FLKGNTIEALVIREQNADGIITISARALALHQSWEKLIQLEKDG 183
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLV 248
V+ KV G N+GG+ E+EGLRGF+P SQ+ E+++GK + +EV+ +L+
Sbjct: 184 DSVQVKVNGFNRGGLTCELEGLRGFIPCSQLQDGENYEKMVGKTIRAALIEVNSSSQKLI 243
Query: 249 LSNRKAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
LS ++A ++ AQL IG ++ G V +KPYG F+DIG INGLLH S I++ + + +
Sbjct: 244 LSEKRATTATRFAQLQIGQLIEGQVTVVKPYGFFVDIGSINGLLHYSCITNGNLREPNKI 303
Query: 308 LQPGDTLKVCL 318
+ G+ +K +
Sbjct: 304 FKQGERIKALI 314
>gi|148242687|ref|YP_001227844.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
gi|147850997|emb|CAK28491.1| 30S ribosomal protein S1 [Synechococcus sp. RCC307]
Length = 397
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 137/239 (57%), Gaps = 2/239 (0%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F E F +AL++ + G V G V ++ G VDI K+ ++P E + I +
Sbjct: 106 FDEEAFLAALDENEPIGATGDVVTGKVIEHESDGIYVDIGGKAPGFMPKNECGLGVIVDL 165
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
+ GL+ + ++ E AD + +S R + AW++ RQL+ E VV+ K+ G N+
Sbjct: 166 KNR-FPKGLEVQVLVTREQNADGMVTVSCRALALRQAWDKVRQLEKEGKVVQVKITGFNR 224
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN-RKAMADSQ 259
GG ++EGLRGF+P SQ++ E L+GK + + F+EV+ + +LVLS + AMA
Sbjct: 225 GGCTCDLEGLRGFIPRSQLNEGENHEALVGKTVGVAFLEVNPDTRKLVLSEKKAAMAAFF 284
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
A L +G +V G V S+KPYG F+D+GG++GLLH S I+ + ++ + GD+L+ +
Sbjct: 285 ADLEVGQLVSGLVTSVKPYGFFVDLGGVSGLLHHSCITGGTMRELREIFDSGDSLQALI 343
>gi|123965829|ref|YP_001010910.1| 30S ribosomal protein S1 protein B, Nbp1 [Prochlorococcus marinus
str. MIT 9515]
gi|123200195|gb|ABM71803.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. MIT 9515]
Length = 408
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 138/242 (57%), Gaps = 6/242 (2%)
Query: 81 FTLEEFHSALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
F +E ++ LE + N +GT +KG + ++ G VDI K+ ++P +E + I
Sbjct: 113 FDFDE-NAFLEALNENEPIGTTGETIKGKIIALESDGLYVDIGGKAPGFMPKKECGLGVI 171
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ +E + GL+ E ++I E AD + +S R + +WE+ +++ + G
Sbjct: 172 TNFKEKFPI-GLEMEVLVIKEQNADGMVTISSRALILRQSWEKVENSAKNGELIQVSING 230
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
N+GG+ +V+GLRGF+P SQ+ + L+ K L + F+EV+ E +LVLS +KA+
Sbjct: 231 FNRGGLTCDVDGLRGFIPRSQLEDGQDYQSLVNKTLKVAFLEVNPESRKLVLSEKKALLV 290
Query: 258 SQ-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S+ + L +G ++ G V +KPYG F+D+GG +GLLH S I++ + ++ + + G+ +K
Sbjct: 291 SKFSGLKLGQLIEGEVLGIKPYGFFVDLGGASGLLHQSSITNGSIRNLREIFEEGELIKA 350
Query: 317 CL 318
+
Sbjct: 351 LI 352
>gi|33861087|ref|NP_892648.1| 30S ribosomal protein S1 [Prochlorococcus marinus subsp. pastoris
str. CCMP1986]
gi|33639819|emb|CAE18989.1| 30S ribosomal protein S1 homolog B, putative Nbp1 [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
Length = 405
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 136/241 (56%), Gaps = 4/241 (1%)
Query: 81 FTLEE--FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
F +E F AL + + G +KG V ++ G +DI K+ ++P +E + I
Sbjct: 113 FDFDESAFLEALNENEPIGATGETIKGKVIALESDGLYIDIGGKAPGFMPKKECGLGVIT 172
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E + L+ E ++I E AD + +S R + +WE+ +++ + G
Sbjct: 173 NFKEKFTID-LEMEVLVIKEQNADGMVTVSARALILRQSWEKVASSAKNGELIQVTINGF 231
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG+ +V+GLRGF+P SQ+ + + L+ K+L + F+EV+ E +LVLS +KA+ S
Sbjct: 232 NRGGLTCDVDGLRGFIPRSQLENGQDYQSLVSKNLKVAFLEVNPETRKLVLSEKKALLVS 291
Query: 259 Q-AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ A L G ++ G V ++KPYG F+D+GG +GLLH S I++ + ++ + + G+ +K
Sbjct: 292 KFADLKFGQLIEGEVLAIKPYGFFVDLGGASGLLHQSSITNGSIRNLREIFREGEVIKAL 351
Query: 318 L 318
+
Sbjct: 352 I 352
>gi|123968121|ref|YP_001008979.1| 30S ribosomal protein S1 [Prochlorococcus marinus str. AS9601]
gi|123198231|gb|ABM69872.1| 30S ribosomal protein S1 protein B, putative Nbp1 [Prochlorococcus
marinus str. AS9601]
Length = 401
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 134/245 (54%), Gaps = 9/245 (3%)
Query: 82 TLEEFH----SALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
T++EF + LE + N +G + G V ++ G VDI K+ Y+P +E +
Sbjct: 105 TVDEFDFDESAFLEALNANEPIGATGETISGKVIAIESDGLYVDIGGKAPGYMPKKECGL 164
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
I + +E + GL+ E ++I E AD + +S R + +WE+ ++
Sbjct: 165 GVITNFKEKFSI-GLEMEVLVIKEQNADGMVTVSARALILRQSWEKVSNSAKNGELINVL 223
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
+ G N+GG+ +V+GLRGF+P SQ+ + +GK+L + F+EV+ E +LVLS +KA
Sbjct: 224 INGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKNLKVAFLEVNPESRKLVLSEKKA 283
Query: 255 -MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ L +G ++ G V ++KPYG FID+GG +GLLH S +++ + + V + G+
Sbjct: 284 SLVSKLTSLELGQLIEGEVLAVKPYGFFIDLGGASGLLHQSSLTNGSIRSLREVFREGEV 343
Query: 314 LKVCL 318
+K +
Sbjct: 344 IKALI 348
>gi|290968708|ref|ZP_06560246.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|335049631|ref|ZP_08542618.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
gi|290781361|gb|EFD93951.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
genomosp. type_1 str. 28L]
gi|333762366|gb|EGL39864.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 199-6]
Length = 635
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/272 (31%), Positives = 141/272 (51%), Gaps = 20/272 (7%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVD 118
+ + +E + EG EE L++YD+ L G V+G V + A V
Sbjct: 261 DWIIQEVVKIMENLQAEGTEVMSEEL---LDQYDYEENLKKGDVVEGKVVSVTDDAAFVS 317
Query: 119 ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYEL 176
I K+ A LP +E + E+AG V + +EF VI + D ++V+SL +Q E
Sbjct: 318 IGTKAEAILPKKEIAV---PAPEKAGDVVHVGDEFKVVIASTVKEDSTIVVSLVKMQKEA 374
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLP 234
WE RQ D +++ NK G+V ++ LRGF+P SQ + + + L+G+
Sbjct: 375 DWEEVRQAYENDQLIECVGKETNKAGLVVSIKSLRGFIPLSQGDVHFVKSLDNLVGQTFQ 434
Query: 235 LKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGG 286
+K +++DE ++RLVLS + + A++ + + + GTV + PYGAF+D+GG
Sbjct: 435 VKIIDLDEHKNRLVLSRKAVLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDLGG 494
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ GLLH+S IS R+ + VL GDT+ V +
Sbjct: 495 VEGLLHISDISWKRIGAVEDVLSVGDTVHVLV 526
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 102/217 (47%), Gaps = 15/217 (6%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N+ LV ++P + +H +K ++ + G + II +E + LVLS +
Sbjct: 397 NKAGLVVSIKSLRGFIPLSQGDVHFVKSLDN---LVGQTFQVKIIDLDEHKNRLVLSRKA 453
Query: 171 MIQYELAWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAE 226
+++ E +R L+ E+ + G VV G ++ G+ G + S IS K E
Sbjct: 454 VLEVEREAKRAEALEHIEENTEMDGTVVKIMPYGAFVDLGGVEGLLHISDISWKRIGAVE 513
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGA 280
++L G + + + D E++R+ LS + + + +G VV G V+ + GA
Sbjct: 514 DVLSVGDTVHVLVQQFDRERNRISLSMKALQKNPWIAAIEKFAVGDVVEGEVKKILNIGA 573
Query: 281 FIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ I I GLLH+S ++ R A + ++ GD ++V
Sbjct: 574 ILAIDPEIQGLLHISALTEQRGAAVKDLVAIGDKMQV 610
>gi|157412946|ref|YP_001483812.1| ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
gi|157387521|gb|ABV50226.1| Ribosomal protein S1 [Prochlorococcus marinus str. MIT 9215]
Length = 400
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 9/245 (3%)
Query: 82 TLEEFH----SALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
T++EF + LE + N +G + G V ++ G VDI K+ Y+P +E +
Sbjct: 104 TVDEFDFDESAFLEALNANEPIGATGETISGKVIAIESDGLYVDIGGKAPGYMPKKECGL 163
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
I + +E + GL+ E ++I E AD + +S R + +WE+ ++
Sbjct: 164 GIITNFKEKFSI-GLEMEVLVIKEQNADGMVTVSARALILRQSWEKVSSSAKNGELINVL 222
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
+ G N+GG+ +V+GLRGF+P SQ+ + +GK L + F+EV+ E +LVLS +KA
Sbjct: 223 INGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKA 282
Query: 255 -MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ L +G ++ G V ++KPYG FID+GG +GLLH S +++ + + V + G+
Sbjct: 283 SLVSKLTNLELGQLIEGEVLAVKPYGFFIDLGGASGLLHQSSLTNGSIRSLREVFREGEM 342
Query: 314 LKVCL 318
+K +
Sbjct: 343 IKALI 347
>gi|126695894|ref|YP_001090780.1| 30S ribosomal protein S1-like protein B, Nbp1 [Prochlorococcus
marinus str. MIT 9301]
gi|126542937|gb|ABO17179.1| 30S ribosomal protein S1-like protein B, putative Nbp1
[Prochlorococcus marinus str. MIT 9301]
Length = 401
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 133/251 (52%), Gaps = 18/251 (7%)
Query: 85 EFHS--ALEKYDFNSE--------------LGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
+FHS ++++DF+ G + G V ++ G +DI K+ Y+P
Sbjct: 99 DFHSERTVDEFDFDESAFLEALNANEPIGATGETISGKVIAIESDGLYIDIGGKAPGYMP 158
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 188
+E + I + +E + GL+ E ++I E AD + +S R + +WE+
Sbjct: 159 KKECGLGVITNFKEKFSI-GLEMEVLVIKEQNADGMVTVSARALILRQSWEKVSSSAKNG 217
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLV 248
++ + G N+GG+ +V+GLRGF+P SQ+ + +GK L + F+EV+ E +LV
Sbjct: 218 ELINVLINGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPESRKLV 277
Query: 249 LSNRKA-MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
LS +KA + L +G ++ G V ++KPYG FID+GG +GLLH S +++ + + V
Sbjct: 278 LSEKKASLVSKLTSLELGQLIEGEVLAVKPYGFFIDLGGASGLLHQSSLTNGSIRSLREV 337
Query: 308 LQPGDTLKVCL 318
+ G+ +K +
Sbjct: 338 FREGEMIKALI 348
>gi|148658373|ref|YP_001278578.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148570483|gb|ABQ92628.1| RNA binding S1 domain protein [Roseiflexus sp. RS-1]
Length = 393
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 137/260 (52%), Gaps = 35/260 (13%)
Query: 85 EFHSALEKYDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
++ L+ YD+ + G +G V + G LV I K +P I V
Sbjct: 16 DWTQMLDDYDYARPQRGEVREGVVMKIEESGILVSIGTKREGIIP--------IADVRAT 67
Query: 144 G--IVPGLK-----EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
G ++ LK + +V EN D LVLSL M+Q WE +L +E +V+G+V+
Sbjct: 68 GDEVLSNLKVGDRIQVYVQDPENRQGD-LVLSLTMVQVARDWEEAARLSAEGGIVQGQVI 126
Query: 197 GANKGGVVAEVEGLRGFVPFSQIS---SKSTAEE-------LLGKDLPLKFVEVDEEQSR 246
G NKGG++ + +RGFVP SQ++ ++ AEE ++G+ +PLK +EVD +++R
Sbjct: 127 GYNKGGLLVQFNRIRGFVPASQVAQLHGRTAAEERQQALQRMVGQTIPLKVIEVDRDRNR 186
Query: 247 LVLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
LVLS R A + + +L G ++ G V L +GAFID+GG +GL H+S++S
Sbjct: 187 LVLSERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGLAHISELSW 246
Query: 299 DRVADIATVLQPGDTLKVCL 318
RV VL PG ++V +
Sbjct: 247 QRVNHPREVLSPGQEVRVMV 266
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 32/257 (12%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP-TQEACIHKI 137
+S T+ + E+ S G V+G V + G LV + ++P +Q A +H
Sbjct: 97 LSLTMVQVARDWEEAARLSAEGGIVQGQVIGYNKGGLLVQFN-RIRGFVPASQVAQLHGR 155
Query: 138 KHVEE--------AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR------Q 183
EE G LK +I + + LVLS R E W + + +
Sbjct: 156 TAAEERQQALQRMVGQTIPLK----VIEVDRDRNRLVLSERSATQE--WRKAQKQRLLTE 209
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVE 239
LQ D++ G+V G ++ G G S++S + + E+L G+++ + VE
Sbjct: 210 LQPGDILT-GRVNQLTNFGAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVE 268
Query: 240 VDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVS 294
+D E+ R+ LS R+ + + +G +V G V ++ P+GAF+ I + GL+H S
Sbjct: 269 IDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHAS 328
Query: 295 QISHDRVADIATVLQPG 311
++ D A +LQPG
Sbjct: 329 ELDADPQAQPRDLLQPG 345
>gi|254526566|ref|ZP_05138618.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
gi|221537990|gb|EEE40443.1| RNA binding S1 [Prochlorococcus marinus str. MIT 9202]
Length = 401
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 133/245 (54%), Gaps = 9/245 (3%)
Query: 82 TLEEFH----SALEKYDFNSELGTK---VKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
T++EF + LE + N +G + G V ++ G VDI K+ Y+P +E +
Sbjct: 105 TVDEFDFDESAFLEALNANEPIGATGETISGKVIAIESDGLYVDIGGKAPGYMPKKECGL 164
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
I + +E + GL+ E ++I E AD + +S R + +WE+ ++
Sbjct: 165 GVITNFKEKFSI-GLEMEVLVIKEQNADGMVTVSARALILRQSWEKVSSSAKNGELINVL 223
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
+ G N+GG+ +V+GLRGF+P SQ+ + +GK L + F+EV+ E +LVLS +KA
Sbjct: 224 INGFNRGGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKA 283
Query: 255 -MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ L +G ++ G V ++KPYG FID+GG +GLLH S +++ + + V + G+
Sbjct: 284 SLVSKLTSLELGQLIEGEVLAVKPYGFFIDLGGASGLLHQSSLTNGSIRSLREVFREGEM 343
Query: 314 LKVCL 318
+K +
Sbjct: 344 IKALI 348
>gi|156740937|ref|YP_001431066.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156232265|gb|ABU57048.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 388
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 140/258 (54%), Gaps = 31/258 (12%)
Query: 85 EFHSALEKYDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
++ L+ YD+ + G +G V ++ G LV I K +P I ++ + +
Sbjct: 16 DWTQMLDDYDYARPQRGEVREGVVMKIEDGGILVSIGTKREGIIP-----IADVRAIGDE 70
Query: 144 GIVPGLK-----EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
++ LK + +V EN D LVLSL M+Q WE +L +E +V+G+V+G
Sbjct: 71 -VLNNLKVGDRIQVYVQDPENRQGD-LVLSLTMVQVARDWEEAARLSAEGGIVQGQVIGY 128
Query: 199 NKGGVVAEVEGLRGFVPFSQIS---SKSTAEE-------LLGKDLPLKFVEVDEEQSRLV 248
NKGG++ + +RGFVP SQ++ ++ AEE ++G+ +PLK +EVD +++RLV
Sbjct: 129 NKGGLLVQFNRIRGFVPASQVAQLHGRTAAEERQQALQRMVGQTIPLKVIEVDRDRNRLV 188
Query: 249 LSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
LS R A + + +L G ++ G V L +GAFID+GG +GL H+S++S R
Sbjct: 189 LSERSATQEWRKAQKQRLLTELQPGDILTGRVNQLTNFGAFIDLGGADGLAHISELSWQR 248
Query: 301 VADIATVLQPGDTLKVCL 318
V VL PG ++V +
Sbjct: 249 VNHPREVLSPGQEVRVMV 266
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 116/257 (45%), Gaps = 32/257 (12%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP-TQEACIHKI 137
+S T+ + E+ S G V+G V + G LV + ++P +Q A +H
Sbjct: 97 LSLTMVQVARDWEEAARLSAEGGIVQGQVIGYNKGGLLVQFN-RIRGFVPASQVAQLHGR 155
Query: 138 KHVEE--------AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR------Q 183
EE G LK +I + + LVLS R E W + + +
Sbjct: 156 TAAEERQQALQRMVGQTIPLK----VIEVDRDRNRLVLSERSATQE--WRKAQKQRLLTE 209
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVE 239
LQ D++ G+V G ++ G G S++S + + E+L G+++ + VE
Sbjct: 210 LQPGDILT-GRVNQLTNFGAFIDLGGADGLAHISELSWQRVNHPREVLSPGQEVRVMVVE 268
Query: 240 VDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVS 294
+D E+ R+ LS R+ + + +G +V G V ++ P+GAF+ I + GL+H S
Sbjct: 269 IDAERERIGLSLRRLQPNPWDTIDQRYSLGQLVSGPVTNVAPFGAFVQIEEAVEGLIHAS 328
Query: 295 QISHDRVADIATVLQPG 311
++ D A +LQPG
Sbjct: 329 ELDADPQAQPRDLLQPG 345
>gi|219848025|ref|YP_002462458.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542284|gb|ACL24022.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 397
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 86/259 (33%), Positives = 136/259 (52%), Gaps = 33/259 (12%)
Query: 85 EFHSALEKYDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQ------EACIHKI 137
++ L+ YD+ + G +G + + G LV I K +P Q E I+ +
Sbjct: 17 DWTQLLDAYDYARPQRGELREGLIMHIEENGVLVSIGTKREGIIPAQDLRQMGEDFINSL 76
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
K + + +V EN D L+LSL M+Q WE QL + + + KV+G
Sbjct: 77 KVGDTVQV-------YVQEPENR-DGDLILSLSMVQVAKDWEVAEQLFRDGGITRCKVIG 128
Query: 198 ANKGGVVAEVEGLRGFVPFSQISS---KSTAEE-------LLGKDLPLKFVEVDEEQSRL 247
NKGG++ + +RGFVP SQ++ ++ A+E ++ +++PLK +EVD E++RL
Sbjct: 129 FNKGGLLVQFNRIRGFVPASQVAQLHGRTAADERQYALQKMINQEIPLKVIEVDRERNRL 188
Query: 248 VLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VLS R A + + +L G V++G V L +GAFID+GG +GL H+S++S
Sbjct: 189 VLSERAATQEWRKAQKHRLLTELQPGDVLVGKVNQLTNFGAFIDLGGADGLAHISELSWQ 248
Query: 300 RVADIATVLQPGDTLKVCL 318
RV VLQPG +KV +
Sbjct: 249 RVNHPREVLQPGQEVKVVV 267
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 84/164 (51%), Gaps = 18/164 (10%)
Query: 163 DSLVLSLRMIQYELAWERCR------QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ LVLS R E W + + +LQ DV+V GKV G ++ G G
Sbjct: 186 NRLVLSERAATQE--WRKAQKHRLLTELQPGDVLV-GKVNQLTNFGAFIDLGGADGLAHI 242
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVV 268
S++S + + E+L G+++ + VE+D E+ R+ LS R+ + + +G +V
Sbjct: 243 SELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQDNPWETIDQRYTLGQLV 302
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
G V ++ P+GAF+ + + GL+H S+++ D A VLQPG
Sbjct: 303 TGPVTNVTPFGAFVQVEEAVEGLIHASELTADPQAQPRDVLQPG 346
>gi|163848394|ref|YP_001636438.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222526319|ref|YP_002570790.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669683|gb|ABY36049.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222450198|gb|ACM54464.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 391
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 87/259 (33%), Positives = 137/259 (52%), Gaps = 33/259 (12%)
Query: 85 EFHSALEKYDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQ------EACIHKI 137
++ L++YD+ + G +G + + G LV I K +P Q E I+ +
Sbjct: 17 DWTQLLDEYDYARPQRGELREGLIMHIEESGVLVSIGTKREGIIPAQDLRQMGEDFINSL 76
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
K V + +V EN D L+LSL M+Q WE QL + + + KV+G
Sbjct: 77 K-------VGDTVQVYVQEPENR-DGDLILSLSMVQVAKDWEVAEQLFHDGGITRCKVIG 128
Query: 198 ANKGGVVAEVEGLRGFVPFSQISS---KSTAEE-------LLGKDLPLKFVEVDEEQSRL 247
NKGG++ + +RGFVP SQ++ ++ A+E ++ +++PLK +EVD E++RL
Sbjct: 129 FNKGGLLVQFNRIRGFVPSSQVAQLHGRTAADERQQALQKMVNQEIPLKVIEVDRERNRL 188
Query: 248 VLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VLS R A + + +L G V++G V L +GAFID+GG +GL H+S++S
Sbjct: 189 VLSERAATQEWRKAQKHRLLTELQPGDVLVGRVNQLTNFGAFIDLGGADGLAHISELSWQ 248
Query: 300 RVADIATVLQPGDTLKVCL 318
RV VLQPG +KV +
Sbjct: 249 RVNHPREVLQPGQEVKVVV 267
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 18/164 (10%)
Query: 163 DSLVLSLRMIQYELAWERCR------QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ LVLS R E W + + +LQ DV+V G+V G ++ G G
Sbjct: 186 NRLVLSERAATQE--WRKAQKHRLLTELQPGDVLV-GRVNQLTNFGAFIDLGGADGLAHI 242
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVV 268
S++S + + E+L G+++ + VE+D E+ R+ LS R+ + + +G +V
Sbjct: 243 SELSWQRVNHPREVLQPGQEVKVVVVEIDRERERIGLSIRQLQNNPWETIDQRYTLGQLV 302
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
G V ++ P+GAF+ + + GL+H S++ D A +LQPG
Sbjct: 303 TGPVTNVTPFGAFVQVEEAVEGLIHASELDADPQAQPRDILQPG 346
>gi|78778915|ref|YP_397027.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
gi|78712414|gb|ABB49591.1| SSU ribosomal protein S1P [Prochlorococcus marinus str. MIT 9312]
Length = 404
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 127/239 (53%), Gaps = 2/239 (0%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
F F AL + + G + G V ++ G VDI K+ Y+P +E + I +
Sbjct: 114 FDESAFLEALNENEPIGATGETISGKVIAIESDGLYVDIGGKAPGYMPKKECGLGVITNF 173
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
+E + GL+ E ++I E AD + +S R + +WE+ ++ + G N+
Sbjct: 174 KEKFSI-GLEMEVLVIKEQNADGMVTVSARALILRQSWEKVSNSAKNGELIDVLINGFNR 232
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA-MADSQ 259
GG+ +V+GLRGF+P SQ+ + +GK L + F+EV+ E +LVLS +KA +
Sbjct: 233 GGLTCDVDGLRGFIPRSQLEDGQDYQSFVGKTLKVAFLEVNPESRKLVLSEKKASLVSKL 292
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L +G ++ G V ++KPYG FID+GG +GLLH S ++ + + + + G+ +K +
Sbjct: 293 TSLDLGQLIEGEVLAVKPYGFFIDLGGASGLLHQSSLTKGSIRSLREIFREGEIIKALI 351
>gi|309790392|ref|ZP_07684957.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG-6]
gi|308227584|gb|EFO81247.1| RNA-binding S1 domain-containing protein [Oscillochloris trichoides
DG6]
Length = 381
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 84/252 (33%), Positives = 138/252 (54%), Gaps = 29/252 (11%)
Query: 90 LEKYDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI--- 145
L++YD+ + G +G + ++ G LV I K +P+Q+ ++ + + +
Sbjct: 14 LDEYDYARPQRGELREGMIMQIEDNGVLVSIGTKREGVIPSQD-----LRQMGDEFLGTL 68
Query: 146 -VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
+ + + +V EN D L+LSL M+Q WE Q+ E +V+ KV+G NKGG++
Sbjct: 69 RIGEMIQVYVQEPENREGD-LILSLTMVQVAKDWETAEQMFGEGGIVRCKVIGFNKGGLL 127
Query: 205 AEVEGLRGFVPFSQIS---SKSTAEE-------LLGKDLPLKFVEVDEEQSRLVLSNRKA 254
+ +RGFVP SQ++ ++ AEE ++ +++PLK +EVD E++RLVLS R A
Sbjct: 128 VQFNRIRGFVPASQVAQLHGRTAAEERQQALQKMVNQEIPLKVIEVDRERNRLVLSERSA 187
Query: 255 MADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ + +L G V+ G V L +GAFID+GG +GL H+S++S RV
Sbjct: 188 TQEWRKAQKQRLLTELQPGDVLSGRVNQLTNFGAFIDLGGADGLAHISELSWQRVNHPRE 247
Query: 307 VLQPGDTLKVCL 318
VL PG +KV +
Sbjct: 248 VLSPGQEVKVVV 259
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/164 (28%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 163 DSLVLSLRMIQYELAWERCR------QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ LVLS R E W + + +LQ DV+ G+V G ++ G G
Sbjct: 178 NRLVLSERSATQE--WRKAQKQRLLTELQPGDVL-SGRVNQLTNFGAFIDLGGADGLAHI 234
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVV 268
S++S + + E+L G+++ + VE+D ++ R+ LS R+ A+ + +G +V
Sbjct: 235 SELSWQRVNHPREVLSPGQEVKVVVVEIDRDRERIGLSLRQLQANPWDTIDQRYSLGQLV 294
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPG 311
G V ++ P+GAF+ + + GL+H S++ D VLQPG
Sbjct: 295 SGPVTNVTPFGAFVQVEDAVEGLIHASELDVDPQTQPRDVLQPG 338
>gi|342218637|ref|ZP_08711247.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
gi|341589507|gb|EGS32782.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera sp.
UPII 135-E]
Length = 636
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 87/267 (32%), Positives = 132/267 (49%), Gaps = 37/267 (13%)
Query: 69 ERCRTAPMEGVSFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAY 126
E C+ E +S L L +YD++ L G V GTV ++ A V I K+ A
Sbjct: 272 ENCQADNAEVMSEEL------LNQYDYDENLKKGDVVDGTVISVNDDAAFVSIGTKAEAI 325
Query: 127 LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN---------EADDSLVLSLRMIQYELA 177
LP +E + P +FV +G+ + + ++V+SL +Q E
Sbjct: 326 LPKKEMAVP----------APEKASDFVAVGDTFKVVIASAIKEESAIVVSLVKMQKEAD 375
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPL 235
WE RQ + VV+ NK G+V ++ LRGF+P SQ I T E L+GK
Sbjct: 376 WEEVRQAYDANQVVECVGKETNKAGLVVSIKTLRGFIPLSQGDIHFVKTLEHLVGKTFEA 435
Query: 236 KFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGI 287
+ +++DE ++RLVLS + + + A + + V GTV + PYGAF+D+GG+
Sbjct: 436 QIIDLDEHKNRLVLSRKAVLEAEREEKREKALATIAENTEVDGTVVKIMPYGAFVDLGGV 495
Query: 288 NGLLHVSQISHDRVADIATVLQPGDTL 314
GLLH+S IS R+ + VL GDT+
Sbjct: 496 EGLLHISDISWKRINTVEDVLSVGDTV 522
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 102/217 (47%), Gaps = 15/217 (6%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
N+ LV ++P + IH +K +E + G E II +E + LVLS +
Sbjct: 397 NKAGLVVSIKTLRGFIPLSQGDIHFVKTLEH---LVGKTFEAQIIDLDEHKNRLVLSRKA 453
Query: 172 IQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAE 226
+ E+ + + E+ V G VV G ++ G+ G + S IS K +T E
Sbjct: 454 VLEAEREEKREKALATIAENTEVDGTVVKIMPYGAFVDLGGVEGLLHISDISWKRINTVE 513
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGA 280
++L G + + D E++R+ LS + ++ + +G VV G V + GA
Sbjct: 514 DVLSVGDTVHALVQQFDRERNRISLSIKALQKNPWIEAIEKFAVGDVVEGKVIKILNIGA 573
Query: 281 FIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ I I GLLH+S+++ R + ++Q GDT+KV
Sbjct: 574 ILAIDPEIQGLLHISELTPQRGVAVKDIVQIGDTMKV 610
>gi|423349119|ref|ZP_17326775.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
gi|393703348|gb|EJD65549.1| ribosomal protein S1 [Scardovia wiggsiae F0424]
Length = 493
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 141/245 (57%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F A++ N + G V+GTV D+ L+DI K+ +P++E I K E
Sbjct: 18 TVDDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDIAPE 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ D L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-DGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G V GT+ SL +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQVREGTISSLVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQKIQAKILELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QL+ V +G + G ++ G+ G + S+
Sbjct: 181 NNVVLSRREYLEETQSEVRETFLSQLKKGQVR-EGTISSLVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKSTQEDPWQHFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + +G F+ + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KITKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETVFV 346
>gi|297584436|ref|YP_003700216.1| RNA-binding S1 domain-containing protein [Bacillus selenitireducens
MLS10]
gi|297142893|gb|ADH99650.1| RNA binding S1 domain protein [Bacillus selenitireducens MLS10]
Length = 388
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 90/240 (37%), Positives = 131/240 (54%), Gaps = 21/240 (8%)
Query: 91 EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG--IVP 147
E DFNS +G KGTV +++ A V++ K +P E HVE+AG I
Sbjct: 8 EMADFNSLSVGDVTKGTVSKVEDKQAYVNVGYKMDGVVPISELASL---HVEKAGDVINE 64
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
G + EF +I E D LVLS R + E WE + V + +V KGG+V +V
Sbjct: 65 GEEYEFKVIKLTE--DELVLSRRAVAAEKTWENMAEKLESGEVFEAEVADVVKGGLVVDV 122
Query: 208 EGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA----- 260
G+RGF+P S + + E GK L LK VE+D E+++L+LS R A+ D +A
Sbjct: 123 -GVRGFIPASLVERFYVEDFSEYKGKTLRLKVVELDRERNKLILSQR-AVLDEEALNQKK 180
Query: 261 ----QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G VV GTVQ + +G F+DIGG++GL+H+SQ+SH+ + + V+ GD +KV
Sbjct: 181 ETLHSISAGEVVSGTVQRITSFGVFVDIGGVDGLVHISQLSHEHIETPSEVVSEGDEVKV 240
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 113/232 (48%), Gaps = 25/232 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VD+ + ++P A + + +VE+ G
Sbjct: 106 FEAEVADVVKG--------GLVVDVGVR--GFIP---ASLVERFYVEDFSEYKGKTLRLK 152
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQ---SEDVVVKGKVVGANKGGVVAEVEGLR 211
++ + + L+LS R + E A + ++ S VV G V GV ++ G+
Sbjct: 153 VVELDRERNKLILSQRAVLDEEALNQKKETLHSISAGEVVSGTVQRITSFGVFVDIGGVD 212
Query: 212 GFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLG 263
G V SQ+S + T E++ G ++ +K + VD + R+ LS ++ M + Q
Sbjct: 213 GLVHISQLSHEHIETPSEVVSEGDEVKVKVLSVDPDNERISLSIKETMPGPWEGVEEQFS 272
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTL 314
+G VV G V+ L +GAF+++ G+ GL+H+SQI++ + VL+ G+ +
Sbjct: 273 VGDVVTGKVKRLVSFGAFVEVAKGVEGLVHISQIANRHIGTPGEVLKEGEEV 324
>gi|148655865|ref|YP_001276070.1| RNA-binding S1 domain-containing protein [Roseiflexus sp. RS-1]
gi|148567975|gb|ABQ90120.1| SSU ribosomal protein S1P [Roseiflexus sp. RS-1]
Length = 403
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 130/244 (53%), Gaps = 20/244 (8%)
Query: 93 YDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
+D+ N + G V G + LVDI AK+ +P +E + + + A + PG
Sbjct: 49 HDYRNLQYGDTVDGIIMRVSRDEILVDIGAKAEGVVPAKE--MQSLSEEDRAALKPGDSL 106
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
++ + + LS+ + E +W R +Q V++ +VV NKGG++ ++G+R
Sbjct: 107 LVFVVQSEDKEGRATLSIDRARQEKSWRRLQQCYETGEVIEARVVNYNKGGLLVNLDGVR 166
Query: 212 GFVPFSQISS---------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--- 259
GFVP SQ+S +S ++G+ L LK +E++ ++RL+LS R+A D +
Sbjct: 167 GFVPSSQVSGISRGSDTQKQSEMARMVGQTLMLKVIEINRNRNRLILSERQAAMDMREGR 226
Query: 260 -----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ L G V G V S+ +GAF+DIGG +GL+H+S+IS R+ VL+PGD +
Sbjct: 227 KGELLSALKEGDVREGIVTSVCDFGAFVDIGGADGLVHLSEISWSRIKHPGEVLKPGDKV 286
Query: 315 KVCL 318
+V +
Sbjct: 287 QVYV 290
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
N + L+LS R ++ R +L S E V +G V G ++ G G V
Sbjct: 205 NRNRNRLILSERQAAMDMREGRKGELLSALKEGDVREGIVTSVCDFGAFVDIGGADGLVH 264
Query: 216 FSQISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSV 267
S+IS K E L G + + + +D E+ R+ LS ++ + A +G IG +
Sbjct: 265 LSEISWSRIKHPGEVLKPGDKVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYQIGQM 324
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
V G V L P+GAF+ I G+ GL+HVS++ RV VLQ GD ++
Sbjct: 325 VEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDVVQ 373
>gi|189095324|ref|YP_001936337.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
gi|157694667|gb|ABV65943.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
gi|157777898|gb|ABV70084.1| 30S ribosomal protein S1 [Heterosigma akashiwo]
Length = 269
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 2/233 (0%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F +KY++ G + G V + G L+DI AK AYLP+ E + + + +
Sbjct: 14 FELLFKKYNYQFSKGDIIAGKVISFEKFGTLIDIGAKVLAYLPSSEISSFQ-AFLTKQLL 72
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
G EFV+ +L++SL+ ++ + W+R ++L ED+++ G+V + K G +
Sbjct: 73 NRGELLEFVLTDYRPNKKTLIISLKQLKSIITWQRLKELIREDLILSGQVKKSTKQGKLI 132
Query: 206 EVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-LGI 264
+ GL+GFV S + ++L LPLKF+E+ E +++++LS + A +Q L
Sbjct: 133 ILNGLKGFVLNSHLPKYYRRKQLTKLHLPLKFLELSEGKNKILLSCKLAHFKNQTNFLKP 192
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
V++G + +K YG F++I G+ GLLH+S+IS R+ +++ Q G ++V
Sbjct: 193 QQVIMGCITDIKSYGLFVNIYGLKGLLHISEISSQRIDNLSKRFQKGQLIQVT 245
>gi|309790847|ref|ZP_07685391.1| RNA binding S1 domain protein [Oscillochloris trichoides DG-6]
gi|308227134|gb|EFO80818.1| RNA binding S1 domain protein [Oscillochloris trichoides DG6]
Length = 402
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 20/244 (8%)
Query: 93 YDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
+D+ N + G V GT+ D LVDI AK+ +P++E + + + A + G +
Sbjct: 41 HDYRNLKYGDTVDGTIMRIDKDEILVDIGAKAEGIVPSRE--MQSLPAEDRAALRIGSEL 98
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
++ + + +LS+ + E +W + V+ +VV NKGG++ ++G+R
Sbjct: 99 LVFVVQSEDKEGRAILSVDKARQEKSWRMLQTAFERGDVITARVVNYNKGGLLVNLDGVR 158
Query: 212 GFVPFSQISSKSTAEE---------LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--- 259
GFVP SQ++ S E ++ DL LK +E++ ++RL+LS R+A+ +++
Sbjct: 159 GFVPASQVNGISRGPETQKQSDMARMVNTDLQLKVIEINRNRNRLILSERQAVQEARETK 218
Query: 260 -----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
++L G V GT+ S+ +GAF+DIGG +GL+H+S+IS RV + VL PGD +
Sbjct: 219 KDELLSRLKEGDVRTGTISSVCDFGAFVDIGGADGLVHLSEISWSRVKHPSEVLHPGDKV 278
Query: 315 KVCL 318
+V +
Sbjct: 279 QVSI 282
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G G V S+IS K +E L G + + + VD ++ R+ LS ++ ++
Sbjct: 243 GAFVDIGGADGLVHLSEISWSRVKHPSEVLHPGDKVQVSILSVDHDRKRIALSIKRTQSE 302
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
+ G +G +V GT+ L +GAF I GI GL+H+S++ +R+ V+ GD
Sbjct: 303 PWTRAGERYQLGQIVEGTITQLASFGAFARIEDGIEGLIHISEMGDERIQHPKEVIAEGD 362
Query: 313 TLK 315
T++
Sbjct: 363 TIQ 365
>gi|407983878|ref|ZP_11164515.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
gi|407374455|gb|EKF23434.1| S1 RNA binding domain protein [Mycobacterium hassiacum DSM 44199]
Length = 478
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G K E +++ + + D L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 HEVVSV--GDKVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 113/229 (49%), Gaps = 23/229 (10%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQIS--HDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S H VAD V+Q GD + V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVAD--QVVQVGDDVMV 346
>gi|383824746|ref|ZP_09979918.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
gi|383336812|gb|EID15207.1| 30S ribosomal protein S1 [Mycobacterium xenopi RIVM700367]
Length = 486
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G K E +++ + + D L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 HEVVKV--GDKVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKELEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 23/229 (10%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS--HDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S H VAD V+ GD + V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVAD--QVVGVGDEVMV 346
>gi|348026190|ref|YP_004765995.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
gi|341822244|emb|CCC73168.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
elsdenii DSM 20460]
Length = 652
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 34/279 (12%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDF--NSELGTKVKGTVFCTDNRGALVD 118
+ + +E + EG EE L+KYD+ N + G VKGTV ++ A V
Sbjct: 261 DWIIQEVVKIMENLQAEGTEVMSEEL---LDKYDYEENPKKGDVVKGTVISVNDDAAYVS 317
Query: 119 ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN---------EADDSLVLSL 169
I K+ A LP +E + P +FV +G+ + + ++V+SL
Sbjct: 318 IGTKAEAILPKKEMAVP----------APEKASDFVKVGDELTVEIANNIKEEGAIVVSL 367
Query: 170 RMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEE 227
++ W+ R+ D +V+ NK G+V ++ LRGF+P SQ I + +
Sbjct: 368 VKMKKVEDWKEVREAFENDQLVECTGKETNKAGLVVSIKSLRGFIPLSQGDIKFVKSLDY 427
Query: 228 LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYG 279
L+G+ +K +++DE ++RLVLS + + + + G+V+ GTV + PYG
Sbjct: 428 LVGQTFQVKVIDIDEHKNRLVLSRKAVLEAEREAKREEALKHIEEGAVLEGTVVKIMPYG 487
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
AFID+GG+ GLLH+S IS R++ + VL G+ L+V +
Sbjct: 488 AFIDLGGVEGLLHISDISWKRISSVDAVLHTGEKLQVLV 526
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDE 242
E V++G VV G ++ G+ G + S IS K S+ + +L G+ L + + D+
Sbjct: 472 EGAVLEGTVVKIMPYGAFIDLGGVEGLLHISDISWKRISSVDAVLHTGEKLQVLVQKFDQ 531
Query: 243 EQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQIS 297
E++R+ LS + + + +G +V G V+ L P+GA + I + GLLH+S+++
Sbjct: 532 ERNRISLSLKALQKNPWIAAIEKFEVGDIVKGEVKKLLPFGAILAIDPELQGLLHISELT 591
Query: 298 HDRVADIATVLQPGDTLKV 316
R + ++ GD + V
Sbjct: 592 EKRGVAVKDLVNIGDVMNV 610
>gi|156741992|ref|YP_001432121.1| RNA-binding S1 domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156233320|gb|ABU58103.1| RNA binding S1 domain protein [Roseiflexus castenholzii DSM 13941]
Length = 411
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 20/244 (8%)
Query: 93 YDF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
+D+ N + G V G + LVDI AK+ +P +E + + + A + PG
Sbjct: 47 HDYRNLQYGDTVDGIIMRVGRDEILVDIGAKAEGVVPARE--MQSLSDDDRAALKPGDPL 104
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
++ + + LS+ + E +W R +Q +++ KV+ NKGG++ ++G+R
Sbjct: 105 LVFVVQSEDKEGRATLSIDRARQEKSWRRLQQCYETGEIIEAKVINYNKGGLLVNLDGVR 164
Query: 212 GFVPFSQISS---------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--- 259
GFVP SQ+S +S ++G+ L LK +E++ ++RL+LS R+A D +
Sbjct: 165 GFVPSSQVSGIGRGSEAQKQSEMARMVGQTLALKVIEINRNRNRLILSERQAAMDVREGR 224
Query: 260 -----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ L G V G V S+ +GAF+DIGG +GL+H+S++S RV + +L+PGD +
Sbjct: 225 KGELLSALKEGDVREGVVTSVCDFGAFVDIGGADGLVHLSELSWSRVKHPSEILKPGDKV 284
Query: 315 KVCL 318
+V +
Sbjct: 285 QVYV 288
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
N + L+LS R ++ R +L S E V +G V G ++ G G V
Sbjct: 203 NRNRNRLILSERQAAMDVREGRKGELLSALKEGDVREGVVTSVCDFGAFVDIGGADGLVH 262
Query: 216 FSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSV 267
S++S E+L G + + + +D E+ R+ LS ++ + A +G IG +
Sbjct: 263 LSELSWSRVKHPSEILKPGDKVQVYVLSIDNERKRIALSLKRTQHEPWATVGERYHIGQM 322
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
V G V L P+GAF+ I G+ GL+HVS++ RV VLQ GD ++
Sbjct: 323 VEGVVTQLAPFGAFVRIEDGVEGLIHVSEMGDGRVQHPRDVLQEGDAVQ 371
>gi|1004353|gb|AAA77669.1| ribosomal protein S1 homolog, partial [Homo sapiens]
Length = 406
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 22/264 (8%)
Query: 71 CRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPT 129
CR ++ +S T EF +ALE ++G V G + DN A+V ++ +P
Sbjct: 4 CRRT-LDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPA 62
Query: 130 QEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQ 185
+E + I +E I G E V+I +D + +LS + + AWE +
Sbjct: 63 REYSDDRNINLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAE 120
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEE 243
+ V KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D
Sbjct: 121 GD--TVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 178
Query: 244 QSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVS 294
+RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS
Sbjct: 179 NARLILS-RKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVS 237
Query: 295 QISHDRVADIATVLQPGDTLKVCL 318
+ISHDRV + A VL GD + V +
Sbjct: 238 EISHDRVKNPADVLTKGDKVDVKI 261
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L + A E F G V V G +VD+ ++P
Sbjct: 92 TSDKEGVAYLLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 148
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 149 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 199
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 200 EVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDV 259
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL
Sbjct: 260 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 319
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 320 VHVSQISNKRIENPSEVLKSGDKVQV 345
>gi|288556073|ref|YP_003428008.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
gi|288547233|gb|ADC51116.1| 30S ribosomal protein S1 [Bacillus pseudofirmus OF4]
Length = 385
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 129/229 (56%), Gaps = 16/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V G V +++ ALVD+ K +P E HVE+ V + +E +
Sbjct: 18 VGDVVTGKVTKVEDKQALVDVGFKVEGIVPISELSSL---HVEKVSDVLSVDDELKMKIL 74
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD L+LS R +Q E AW++ R+ Q + ++ +V KGG+V +V G+RGF+P S
Sbjct: 75 KLEDDELILSKRAVQAEKAWDQLRKQQEKGEIITAEVAEVVKGGLVVDV-GVRGFIPASL 133
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSV 267
+ + + G++L LK E+D+E ++L+LS R A+ D++ + L G
Sbjct: 134 VERHFVEDFSDYKGRELRLKVEELDQENNKLILSQR-AVLDAELEEKKKNVLQSLKSGDT 192
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V GTVQ L +GAF+D+GG++GL+H+SQ++H RV + ++ GD +KV
Sbjct: 193 VEGTVQRLTNFGAFVDVGGVDGLVHISQLAHHRVETPSDIVNEGDKVKV 241
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 91/174 (52%), Gaps = 20/174 (11%)
Query: 159 NEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
++ ++ L+LS R ++ EL ++ LQS V+G V G +V G+ G V
Sbjct: 158 DQENNKLILSQRAVLDAELEEKKKNVLQSLKSGDTVEGTVQRLTNFGAFVDVGGVDGLVH 217
Query: 216 FSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLG 263
SQ++ T +++ G + +K + VD + R+ LS + D+Q Q+
Sbjct: 218 ISQLAHHRVETPSDIVNEGDKVKVKVLSVDPDSERVSLS----IKDTQPGPWEEVAGQIS 273
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTV+ L +GAF+++ G+ GL+H+SQI++ + + VL G+ ++V
Sbjct: 274 TGDVIEGTVRRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPSEVLTEGEKVEV 327
>gi|294786795|ref|ZP_06752049.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315226424|ref|ZP_07868212.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|420237201|ref|ZP_14741672.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
gi|294485628|gb|EFG33262.1| ribosomal protein S1 [Parascardovia denticolens F0305]
gi|315120556|gb|EFT83688.1| 30S ribosomal protein S1 [Parascardovia denticolens DSM 10105 = JCM
12538]
gi|391879472|gb|EIT87978.1| 30S ribosomal protein S1 [Parascardovia denticolens IPLA 20019]
Length = 493
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 141/245 (57%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F A++ N + G V+GTV D+ L+DI K+ +P++E I K E
Sbjct: 18 TVDDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSKELSIKKDVTPE 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQKIQAKILELDKNRNNVVLSRREYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G V GT+ S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQVREGTISSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQKIQAKILELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QL+ V +G + G ++ G+ G + S+
Sbjct: 181 NNVVLSRREYLEETQSEVRETFLSQLKKGQVR-EGTISSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVRG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G F+ + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFVSVDDGIEGLIHISELANRHVENPETVVKPGETIFV 346
>gi|56963639|ref|YP_175370.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
gi|56909882|dbj|BAD64409.1| 30S ribosomal protein S1 [Bacillus clausii KSM-K16]
Length = 384
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 17/245 (6%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+EE + +++ S +G V G V +++ A VD+ K +P E HVE+
Sbjct: 2 VEEMNDGMDEIKSFS-VGDIVTGKVTKVEDKQAFVDVGFKVDGIVPISELSSL---HVEK 57
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
A V + +E + DD L+LS + +Q E AWE+ + + V++ +V KGG
Sbjct: 58 ASDVLSVDDELELKVTKVEDDELILSKKAVQAEKAWEQLEEAYEKGEVIEAEVAEVVKGG 117
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
+V +V G+RGF+P S + + + GK L LK E+D++ ++L+LS R A+ D++
Sbjct: 118 LVVDV-GVRGFIPASLVERHYVEDFSDYKGKPLRLKVTEIDKDNNKLILSQR-AVLDAEI 175
Query: 261 Q---------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ L G VV G VQ L +GAF+D+GG++GL+H+SQI+H+RV + VL G
Sbjct: 176 EEKKKQVLHSLSTGDVVEGKVQRLTSFGAFVDVGGVDGLVHISQIAHERVEHPSDVLSEG 235
Query: 312 DTLKV 316
++V
Sbjct: 236 QEVRV 240
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 121/242 (50%), Gaps = 28/242 (11%)
Query: 84 EEFHSALEKYD-FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+ A EK + +E+ VKG G +VD+ + ++P A + + +VE+
Sbjct: 94 EQLEEAYEKGEVIEAEVAEVVKG--------GLVVDVGVR--GFIP---ASLVERHYVED 140
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQ----LQSEDVVVKGKVVGA 198
G + ++ ++ L+LS R + E+ +Q L + DVV +GKV
Sbjct: 141 FSDYKGKPLRLKVTEIDKDNNKLILSQRAVLDAEIEEKKKQVLHSLSTGDVV-EGKVQRL 199
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V SQI+ + ++L G+++ +K + VD + R+ LS ++
Sbjct: 200 TSFGAFVDVGGVDGLVHISQIAHERVEHPSDVLSEGQEVRVKVLSVDPDSERVSLSIKEM 259
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+A + +++ G +V GTV+ L +GAF++I G+ GL+H+SQIS + VL+
Sbjct: 260 LAGPWENIESKFSAGDIVTGTVKRLVSFGAFVEIAPGVEGLVHISQISKRHIGTPQEVLE 319
Query: 310 PG 311
G
Sbjct: 320 EG 321
>gi|294790747|ref|ZP_06755905.1| ribosomal protein S1 [Scardovia inopinata F0304]
gi|294458644|gb|EFG26997.1| ribosomal protein S1 [Scardovia inopinata F0304]
Length = 494
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F A++ N + G V+GTV D L+DI K+ +P++E I K E
Sbjct: 18 TVDDFIKAVDSTIKNFDDGDLVEGTVVKIDRDEVLLDIGYKTEGVIPSKELSIKKDVDPE 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ D L+LS + QYE AW +++ D VV+G V+ KG
Sbjct: 78 DVVQVGDTIEALVVTKEDK-DGRLILSKKRAQYERAWGDVEKIKEADGVVEGTVIETVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQRIQAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + GT+ S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGTISSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV T G +VDI + +LP A + +++ V + G + + I+ ++
Sbjct: 126 VEGTVIETVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQRIQAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G + G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGTISSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKSTQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G F+ + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFVSVDDGIEGLIHISELANRHVDNPETVVKPGEEVFV 346
>gi|291547610|emb|CBL20718.1| Ribosomal protein S1 [Ruminococcus sp. SR1/5]
Length = 300
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 141/250 (56%), Gaps = 20/250 (8%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
++++F LE + G + GTV D G ++D+ + ++P +E +++
Sbjct: 4 SMKDFERELEASFKRIDEGDIISGTVVSVDESGVVLDLKFYAEGFIPVEEFSRVPGFNIK 63
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DVVVKGKVVG 197
EA + PG + + +++ ++ +++LS LAW+R ++LQ DVVVKG V
Sbjct: 64 EA-VQPGDEVQAMVLRRDDGQGNILLSRADAADVLAWDRLKELQDSGEVLDVVVKGIV-- 120
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
GG +A VEG+RGF+P S+++ + E L K + ++ +E D+ + RLVLS R+ +
Sbjct: 121 --NGGAIAYVEGVRGFIPASRLALEFVEDTEVFLNKPIQVRVIEADKAKKRLVLSAREIL 178
Query: 256 ADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIAT 306
+ + + +G V GTV+SL+PYGAF+++G G++GL+H+SQI R+ +
Sbjct: 179 RERAEVEKRNKISNIQVGFVTEGTVESLQPYGAFVELGNGVSGLVHISQICEKRIRKPSE 238
Query: 307 VLQPGDTLKV 316
VL GD +KV
Sbjct: 239 VLSVGDKVKV 248
>gi|385799694|ref|YP_005836098.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
praevalens DSM 2228]
gi|309389058|gb|ADO76938.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
praevalens DSM 2228]
Length = 721
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 131/229 (57%), Gaps = 16/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF--VIIG 157
G KV GTV + G VD+ K+ ++P + H+ VE+A + + EE VI+
Sbjct: 338 GQKVTGTVVEINENGVYVDVNYKTDGFIPLRHLS-HRT--VEDANDIVSMDEEIEVVILT 394
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
+ + ++VLS + +YE AWE+ + + + +++ +V KGG+V +V G+RGF+P S
Sbjct: 395 LEDEEGNMVLSKKQAEYEKAWEKIEEAYNNEEIIEAEVTKEVKGGLVVDV-GVRGFIPAS 453
Query: 218 QISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA--------DSQAQLGIGSV 267
++ + + +G+ L LK +EV+ + + +VLS++K + ++ A L G
Sbjct: 454 HVAIGYVDDLKDYVGESLRLKVIEVERDNNNVVLSHKKVLEKERAAKKEETLASLEEGQT 513
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V GTV L +GAFID+GGI GLLH+S++S R+ A VL G+ ++V
Sbjct: 514 VEGTVTKLVDFGAFIDLGGIEGLLHISEMSWGRIESPAEVLTEGEKVEV 562
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 162 DDSLVLS-LRMIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++++VLS ++++ E A ++ L S E V+G V G ++ G+ G + S+
Sbjct: 482 NNNVVLSHKKVLEKERAAKKEETLASLEEGQTVEGTVTKLVDFGAFIDLGGIEGLLHISE 541
Query: 219 ISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIG 270
+S +S AE L G+ + +K + V++E+ R+ L ++ +AD + G V+ G
Sbjct: 542 MSWGRIESPAEVLTEGEKVEVKVLGVNKEEERISLGLKQLLADPWEEFAEKHYEGEVIEG 601
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
+ L +GAF+++ GI GL+H+SQ+SH V V+ GD
Sbjct: 602 KITKLVDFGAFMEVEKGIEGLIHISQLSHRHVKTTDEVVSVGD 644
>gi|219848347|ref|YP_002462780.1| RNA binding S1 domain-containing protein [Chloroflexus aggregans
DSM 9485]
gi|219542606|gb|ACL24344.1| RNA binding S1 domain protein [Chloroflexus aggregans DSM 9485]
Length = 400
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 130/240 (54%), Gaps = 19/240 (7%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G V G + D LVDI AK+ +P++E + + + A + G +
Sbjct: 46 NLKHGDTVDGRIMRIDRDEILVDIGAKAEGVVPSRE--MQTLSEEDRAALKVGDTILVFV 103
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ + + +LS+ + E +W ++ ++ +V NKGG++ +++G+RGFVP
Sbjct: 104 VQSEDKEGRAILSIDKARQEKSWRALQEYYERGEIIYARVKNYNKGGLLVDLDGVRGFVP 163
Query: 216 FSQISSKSTAEE---------LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ------- 259
SQ+SS S A E L+ +LPLK +E++ ++RL+LS R+A+ +++
Sbjct: 164 ASQVSSVSRASEAQKQSEMARLVNVELPLKVIEINRNRNRLILSERQALVETRETKKDEL 223
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
A L G V G V S+ +G F+DIGG +GL+H+S+IS RV + VL+ GD +KV +
Sbjct: 224 LASLQEGDVREGVVSSVCDFGVFVDIGGADGLVHLSEISWSRVKHPSEVLKVGDKVKVSI 283
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV ++ G G V S+IS K +E L +G + + + +D E+ R+ LS ++ ++
Sbjct: 244 GVFVDIGGADGLVHLSEISWSRVKHPSEVLKVGDKVKVSILNIDHERKRIALSIKRTQSE 303
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
++ +G +V GTV L +GAF+ I G+ GL+HVS++ +R+ VL G
Sbjct: 304 PWTRVAERYQLGQIVEGTVTQLASFGAFVRIEDGVEGLIHVSEMGDERIQHPRDVLSEGQ 363
Query: 313 TLK 315
++
Sbjct: 364 VVQ 366
>gi|408501167|ref|YP_006865086.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
gi|408465991|gb|AFU71520.1| 30S ribosomal protein S1 [Bifidobacterium asteroides PRL2011]
Length = 501
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 139/243 (57%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K ++
Sbjct: 20 EDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPDDV 79
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KGG+
Sbjct: 80 VQVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKGGL 138
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 139 IVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQSE 197
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
AQL G + GTV S+ +GAF+D+GG++GL+HVS++S + + V++ GD
Sbjct: 198 VRETFMAQLKKGQIREGTVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVGDK 257
Query: 314 LKV 316
+ V
Sbjct: 258 VTV 260
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFMAQLK-KGQIREGTVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDMDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G F+ + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFVSVEDGIEGLVHISELANRHVENPETVVKQGEEIFV 346
>gi|261338679|ref|ZP_05966563.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
gi|270276304|gb|EFA22158.1| ribosomal protein S1 [Bifidobacterium gallicum DSM 20093]
Length = 495
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 140/245 (57%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+E+F A++ N + G V+G V D+ L+DI K+ +P++E I K +
Sbjct: 18 TVEDFIKAVDSTIKNFDDGDLVEGQVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ +D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVRG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|23336678|ref|ZP_00121881.1| COG0539: Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 484
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|333919158|ref|YP_004492739.1| RNA binding S1 domain-containing protein [Amycolicicoccus subflavus
DQS3-9A1]
gi|333481379|gb|AEF39939.1| RNA binding S1 domain protein [Amycolicicoccus subflavus DQS3-9A1]
Length = 489
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
EEF +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EEFLAAVDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + D L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKDGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL V G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLHQLQKSQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKSQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS--HDRVADIATVLQPGDTLKVC 317
V L P+GAF+ + GI GL+H+S+++ H V D + +KV
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVNDDAMVKVI 349
>gi|326692495|ref|ZP_08229500.1| 40S ribosomal protein S1 [Leuconostoc argentinum KCTC 3773]
gi|1085376|pir||JC4026 ribosomal protein S1-like DNA-binding protein - human
Length = 396
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G V G + DN A+V ++ +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D + +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL GD + V +
Sbjct: 236 NPADVLTKGDKVDVKI 251
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L + A E F G V V G +VD+ ++P
Sbjct: 82 TSDKEGVAYLLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 139 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 190 EVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDV 249
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDKVQV 335
>gi|120404330|ref|YP_954159.1| 30S ribosomal protein S1 [Mycobacterium vanbaalenii PYR-1]
gi|119957148|gb|ABM14153.1| SSU ribosomal protein S1P [Mycobacterium vanbaalenii PYR-1]
Length = 481
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|404443511|ref|ZP_11008680.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
gi|403655333|gb|EJZ10196.1| 30S ribosomal protein S1 [Mycobacterium vaccae ATCC 25954]
Length = 480
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|118472813|ref|YP_888124.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|399988146|ref|YP_006568496.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|441210769|ref|ZP_20974767.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
gi|118174100|gb|ABK74996.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|399232708|gb|AFP40201.1| 30S ribosomal protein S1 [Mycobacterium smegmatis str. MC2 155]
gi|440626699|gb|ELQ88527.1| 30S ribosomal protein S1 [Mycobacterium smegmatis MKD8]
Length = 479
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|433647758|ref|YP_007292760.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
gi|433297535|gb|AGB23355.1| ribosomal protein S1 [Mycobacterium smegmatis JS623]
Length = 481
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|392416422|ref|YP_006453027.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
gi|390616198|gb|AFM17348.1| ribosomal protein S1 [Mycobacterium chubuense NBB4]
Length = 480
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|145224145|ref|YP_001134823.1| 30S ribosomal protein S1 [Mycobacterium gilvum PYR-GCK]
gi|315444481|ref|YP_004077360.1| 30S ribosomal protein S1 [Mycobacterium gilvum Spyr1]
gi|145216631|gb|ABP46035.1| SSU ribosomal protein S1P [Mycobacterium gilvum PYR-GCK]
gi|315262784|gb|ADT99525.1| SSU ribosomal protein S1P [Mycobacterium gilvum Spyr1]
Length = 481
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|171743205|ref|ZP_02919012.1| hypothetical protein BIFDEN_02333 [Bifidobacterium dentium ATCC
27678]
gi|283455814|ref|YP_003360378.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|306823050|ref|ZP_07456426.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|309801254|ref|ZP_07695383.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
gi|171278819|gb|EDT46480.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27678]
gi|283102448|gb|ADB09554.1| 30S ribosomal protein S1 [Bifidobacterium dentium Bd1]
gi|304553682|gb|EFM41593.1| 30S ribosomal protein S1 [Bifidobacterium dentium ATCC 27679]
gi|308222143|gb|EFO78426.1| putative ribosomal protein S1 [Bifidobacterium dentium JCVIHMP022]
Length = 490
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|404421594|ref|ZP_11003308.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
gi|403658822|gb|EJZ13520.1| 30S ribosomal protein S1 [Mycobacterium fortuitum subsp. fortuitum
DSM 46621]
Length = 479
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|170017041|ref|YP_001727960.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|414596444|ref|ZP_11446019.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
gi|421876351|ref|ZP_16307909.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|421878101|ref|ZP_16309584.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|169803898|gb|ACA82516.1| 40S ribosomal protein S1 [Leuconostoc citreum KM20]
gi|372557872|emb|CCF24029.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C10]
gi|390447976|emb|CCF25704.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE C11]
gi|390482906|emb|CCF28080.1| 40S ribosomal protein S1 [Leuconostoc citreum LBAE E16]
Length = 396
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 137/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G V G + DN A+V ++ +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D + +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDSIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLDFAEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KVV A +GG++ V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVVNAVRGGLIVMVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDAANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL GD + V +
Sbjct: 236 NPADVLTKGDKVNVKI 251
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L + A E DF G V V RG L+ + ++P
Sbjct: 82 TSDKEGVAYLLSKKRLDARKAWENLDFAE--GDTVDAKVVNA-VRGGLIVMVNGVRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 139 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DAANARLILSRKAVA---AQERAAQLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 190 EVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVNV 249
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ ++ GSV+ GTV+ +K +GAF++I GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQRGPWDEAADKIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDKVQV 335
>gi|119025692|ref|YP_909537.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154487492|ref|ZP_02028899.1| hypothetical protein BIFADO_01347 [Bifidobacterium adolescentis
L2-32]
gi|118765276|dbj|BAF39455.1| 30S ribosomal protein S1 [Bifidobacterium adolescentis ATCC 15703]
gi|154084010|gb|EDN83055.1| putative ribosomal protein S1 [Bifidobacterium adolescentis L2-32]
Length = 490
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|421735863|ref|ZP_16174741.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
gi|407296849|gb|EKF16353.1| 30S ribosomal protein S1 [Bifidobacterium bifidum IPLA 20015]
Length = 490
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|421733456|ref|ZP_16172561.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
gi|407078595|gb|EKE51396.1| 30S ribosomal protein S1 [Bifidobacterium bifidum LMG 13195]
Length = 490
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 104/220 (47%), Gaps = 19/220 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQ 309
V + +G FI + GI GL+H+S++++ V + TV++
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVK 339
>gi|383817893|ref|ZP_09973194.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
gi|383339724|gb|EID18052.1| 30S ribosomal protein S1 [Mycobacterium phlei RIVM601174]
Length = 477
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 141/247 (57%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|311064142|ref|YP_003970867.1| 30S ribosomal protein S1 [Bifidobacterium bifidum PRL2010]
gi|313139998|ref|ZP_07802191.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|390936652|ref|YP_006394211.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
gi|310866461|gb|ADP35830.1| RpsA SSU ribosomal protein S1P [Bifidobacterium bifidum PRL2010]
gi|313132508|gb|EFR50125.1| 30S ribosomal protein S1 [Bifidobacterium bifidum NCIMB 41171]
gi|389890265|gb|AFL04332.1| 30S ribosomal protein S1 [Bifidobacterium bifidum BGN4]
Length = 490
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|291456496|ref|ZP_06595886.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|384197191|ref|YP_005582935.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|417942230|ref|ZP_12585505.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
gi|291381773|gb|EFE89291.1| ribosomal protein S1 [Bifidobacterium breve DSM 20213 = JCM 1192]
gi|333109696|gb|AEF26712.1| 30S ribosomal protein S1 [Bifidobacterium breve ACS-071-V-Sch8b]
gi|339478978|gb|ABE95439.1| SSU ribosomal protein S1P [Bifidobacterium breve UCC2003]
gi|376167330|gb|EHS86177.1| Ribosomal protein S1 [Bifidobacterium breve CECT 7263]
Length = 491
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|225351875|ref|ZP_03742898.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157122|gb|EEG70461.1| hypothetical protein BIFPSEUDO_03477 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 491
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQTIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|374612566|ref|ZP_09685343.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
gi|373547477|gb|EHP74202.1| RNA binding S1 domain protein [Mycobacterium tusciae JS617]
Length = 515
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 51 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 107
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 108 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 165
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 166 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 224
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 225 EQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 284
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 285 VQVGDEVTV 293
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 159 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 213
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 214 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 272
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 273 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 332
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q D V
Sbjct: 333 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVNDDAMV 379
>gi|23465561|ref|NP_696164.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189439608|ref|YP_001954689.1| 30S ribosomal protein S1 [Bifidobacterium longum DJO10A]
gi|23326226|gb|AAN24800.1| 30S ribosomal protein S1 [Bifidobacterium longum NCC2705]
gi|189428043|gb|ACD98191.1| Ribosomal protein S1 [Bifidobacterium longum DJO10A]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|317481889|ref|ZP_07940916.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
gi|316916680|gb|EFV38075.1| S1 RNA binding domain-containing protein [Bifidobacterium sp.
12_1_47BFAA]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|310287294|ref|YP_003938552.1| 30S ribosomal protein S1 [Bifidobacterium bifidum S17]
gi|309251230|gb|ADO52978.1| SSU ribosomal protein S1P [Bifidobacterium bifidum S17]
Length = 490
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKSGEEVFV 346
>gi|227546158|ref|ZP_03976207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum ATCC
55813]
gi|239621800|ref|ZP_04664831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|322688831|ref|YP_004208565.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|322690819|ref|YP_004220389.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|384201809|ref|YP_005587556.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|419846596|ref|ZP_14369831.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|419850464|ref|ZP_14373454.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|419853759|ref|ZP_14376564.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|419855926|ref|ZP_14378671.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
gi|227213139|gb|EEI81011.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514991|gb|EEQ54858.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
CCUG 52486]
gi|291517108|emb|CBK70724.1| SSU ribosomal protein S1P [Bifidobacterium longum subsp. longum F8]
gi|320455675|dbj|BAJ66297.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum JCM
1217]
gi|320460167|dbj|BAJ70787.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
157F]
gi|338754816|gb|AEI97805.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum KACC
91563]
gi|386406831|gb|EIJ21825.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
2-2B]
gi|386408991|gb|EIJ23869.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 35B]
gi|386413633|gb|EIJ28225.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum
1-6B]
gi|386414587|gb|EIJ29140.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. longum 44B]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|213692621|ref|YP_002323207.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|213524082|gb|ACJ52829.1| RNA binding S1 domain protein [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFV 346
>gi|312133007|ref|YP_004000346.1| rpsa [Bifidobacterium longum subsp. longum BBMN68]
gi|311773993|gb|ADQ03481.1| RpsA [Bifidobacterium longum subsp. longum BBMN68]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|15614199|ref|NP_242502.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
gi|10174253|dbj|BAB05355.1| 30S ribosomal protein S1 [Bacillus halodurans C-125]
Length = 383
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 125/229 (54%), Gaps = 16/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V G V +++ A VD+ K +P E HVE+ V +E +
Sbjct: 17 VGDVVSGKVTKVEDKQAFVDVGFKVDGIIPISELSSL---HVEKVSDVLSEGDELELKVL 73
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD L+LS R +Q E AWE + V++ +V KGG+V ++ G+RGF+P S
Sbjct: 74 KVEDDELILSKRAVQAEKAWETLQAALDSGEVIEAEVADVVKGGLVVDL-GVRGFIPASL 132
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSV 267
+ + + G+ L LK VE+D+E ++L+LS R A+ D + A L G V
Sbjct: 133 VERHYVEDFSDYKGRTLRLKVVELDKEANKLILSQR-AVLDEEVEAKKKEVLASLQPGDV 191
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V GTVQ L +GAF+D+GG++GL+H+SQ++H RV A V++ GD +KV
Sbjct: 192 VEGTVQRLTDFGAFVDVGGVDGLVHISQLAHHRVETPAEVVKEGDAVKV 240
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 14/166 (8%)
Query: 163 DSLVLSLRMIQYELAWERCRQ----LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ L+LS R + E + ++ LQ DVV +G V G +V G+ G V SQ
Sbjct: 161 NKLILSQRAVLDEEVEAKKKEVLASLQPGDVV-EGTVQRLTDFGAFVDVGGVDGLVHISQ 219
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ----LGIGSVVIG 270
++ T E++ G + +K + VD + R+ LS ++ + Q + G V+ G
Sbjct: 220 LAHHRVETPAEVVKEGDAVKVKVLSVDPDSERVSLSIKETLPGPWEQVEGTIQPGDVIEG 279
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
TV+ L +GAF+++ G+ GL+H+SQI++ + VL G+ ++
Sbjct: 280 TVKRLVSFGAFVEVAPGVEGLVHISQIANRHIGTPGEVLSEGERVQ 325
>gi|336441308|gb|AEI54879.1| 30S ribosomal protein S1 [Mycobacterium immunogenum]
Length = 481
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II +
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDRNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMV 346
>gi|365870180|ref|ZP_09409724.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|397679450|ref|YP_006520985.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
gi|414580037|ref|ZP_11437178.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
gi|418248590|ref|ZP_12874976.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
gi|418420385|ref|ZP_12993566.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii
BD]
gi|419712654|ref|ZP_14240111.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
gi|419715386|ref|ZP_14242790.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
gi|420861808|ref|ZP_15325204.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
gi|420868499|ref|ZP_15331881.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
gi|420872943|ref|ZP_15336320.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
gi|420877185|ref|ZP_15340554.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
gi|420883048|ref|ZP_15346411.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
gi|420889059|ref|ZP_15352410.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
gi|420893374|ref|ZP_15356716.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
gi|420898783|ref|ZP_15362118.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
gi|420904588|ref|ZP_15367907.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
gi|420931348|ref|ZP_15394623.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
gi|420937500|ref|ZP_15400769.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
gi|420941605|ref|ZP_15404863.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
gi|420948277|ref|ZP_15411527.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
gi|420951858|ref|ZP_15415102.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
gi|420956028|ref|ZP_15419265.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
gi|420961691|ref|ZP_15424917.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
gi|420971496|ref|ZP_15434691.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
gi|420989221|ref|ZP_15452377.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
gi|420991997|ref|ZP_15455145.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
gi|420997834|ref|ZP_15460972.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
gi|421002273|ref|ZP_15465399.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
gi|421037697|ref|ZP_15500709.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
gi|421043297|ref|ZP_15506298.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
gi|421049238|ref|ZP_15512233.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|183427450|gb|ACC62511.1| S1 ribosomal protein [Mycobacterium abscessus]
gi|336441304|gb|AEI54877.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
gi|336441310|gb|AEI54880.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii]
gi|353453083|gb|EHC01477.1| 30S ribosomal protein S1 [Mycobacterium abscessus 47J26]
gi|363997369|gb|EHM18581.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|364000222|gb|EHM21423.1| 30S ribosomal protein S1 [Mycobacterium abscessus subsp. bolletii
BD]
gi|382937435|gb|EIC61789.1| 30S ribosomal protein S1 [Mycobacterium abscessus M93]
gi|382943954|gb|EIC68264.1| 30S ribosomal protein S1 [Mycobacterium abscessus M94]
gi|392067969|gb|EIT93816.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RA]
gi|392071971|gb|EIT97812.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0726-RB]
gi|392076969|gb|EIU02800.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0303]
gi|392088676|gb|EIU14496.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0304]
gi|392090018|gb|EIU15834.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0421]
gi|392090152|gb|EIU15966.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0422]
gi|392101964|gb|EIU27751.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0708]
gi|392106492|gb|EIU32277.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0817]
gi|392107053|gb|EIU32836.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1212]
gi|392119861|gb|EIU45628.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-1215]
gi|392136107|gb|EIU61844.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-151-0930]
gi|392143015|gb|EIU68740.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-152-0914]
gi|392151087|gb|EIU76799.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-153-0915]
gi|392155307|gb|EIU81013.1| 30S ribosomal protein S1 [Mycobacterium massiliense 1S-154-0310]
gi|392157170|gb|EIU82867.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0626]
gi|392168207|gb|EIU93886.1| 30S ribosomal protein S1 [Mycobacterium abscessus 5S-0921]
gi|392183500|gb|EIV09151.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0206]
gi|392186611|gb|EIV12257.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0307]
gi|392187546|gb|EIV13187.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-R]
gi|392197486|gb|EIV23101.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0912-S]
gi|392229378|gb|EIV54889.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-R]
gi|392237149|gb|EIV62643.1| 30S ribosomal protein S1 [Mycobacterium abscessus 4S-0116-S]
gi|392241151|gb|EIV66641.1| 30S ribosomal protein S1 [Mycobacterium massiliense CCUG 48898]
gi|392251725|gb|EIV77197.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-1231]
gi|392252927|gb|EIV78395.1| 30S ribosomal protein S1 [Mycobacterium massiliense 2B-0107]
gi|395457715|gb|AFN63378.1| 30S ribosomal protein S1 [Mycobacterium massiliense str. GO 06]
Length = 481
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II +
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDRNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMV 346
>gi|296453875|ref|YP_003661018.1| RNA-binding S1 domain-containing protein [Bifidobacterium longum
subsp. longum JDM301]
gi|384199820|ref|YP_005585563.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
gi|296183306|gb|ADH00188.1| RNA binding S1 domain protein [Bifidobacterium longum subsp. longum
JDM301]
gi|320458772|dbj|BAJ69393.1| 30S ribosomal protein S1 [Bifidobacterium longum subsp. infantis
ATCC 15697 = JCM 1222]
Length = 491
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEAVFV 346
>gi|229817852|ref|ZP_04448134.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
gi|229784752|gb|EEP20866.1| hypothetical protein BIFANG_03138 [Bifidobacterium angulatum DSM
20098 = JCM 7096]
Length = 490
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTVEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIEAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K E I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIEAKILELDKNR 180
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+T+ V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGETVFV 346
>gi|336441302|gb|AEI54876.1| 30S ribosomal protein S1 [Mycobacterium franklinii]
Length = 481
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II +
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDRNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMV 346
>gi|169629382|ref|YP_001703031.1| 30S ribosomal protein S1 [Mycobacterium abscessus ATCC 19977]
gi|420909888|ref|ZP_15373201.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
gi|420916343|ref|ZP_15379647.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
gi|420920887|ref|ZP_15384184.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
gi|420927169|ref|ZP_15390451.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
gi|420966669|ref|ZP_15429874.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
gi|420977508|ref|ZP_15440687.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
gi|420982889|ref|ZP_15446058.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
gi|421007295|ref|ZP_15470407.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
gi|421012807|ref|ZP_15475894.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
gi|421017716|ref|ZP_15480776.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
gi|421023271|ref|ZP_15486318.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
gi|421029448|ref|ZP_15492482.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
gi|421033301|ref|ZP_15496323.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
gi|169241349|emb|CAM62377.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
gi|336441300|gb|AEI54875.1| 30S ribosomal protein S1 [Mycobacterium abscessus]
gi|392120483|gb|EIU46249.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-S]
gi|392122262|gb|EIU48027.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0125-R]
gi|392130723|gb|EIU56469.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-S]
gi|392134402|gb|EIU60143.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-1108]
gi|392166708|gb|EIU92391.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0212]
gi|392172369|gb|EIU98040.1| 30S ribosomal protein S1 [Mycobacterium abscessus 6G-0728-R]
gi|392200224|gb|EIV25831.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0119-R]
gi|392205347|gb|EIV30931.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-R]
gi|392210502|gb|EIV36069.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0122-S]
gi|392214240|gb|EIV39792.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0731]
gi|392228953|gb|EIV54465.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-R]
gi|392229842|gb|EIV55352.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0930-S]
gi|392252110|gb|EIV77579.1| 30S ribosomal protein S1 [Mycobacterium abscessus 3A-0810-R]
Length = 481
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II +
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDRNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMV 346
>gi|336441306|gb|AEI54878.1| 30S ribosomal protein S1 [Mycobacterium chelonae]
Length = 481
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDRNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II +
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDRNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVGVGDDAMV 346
>gi|345021423|ref|ZP_08785036.1| 30S ribosomal protein S1 [Ornithinibacillus scapharcae TW25]
Length = 377
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 134/240 (55%), Gaps = 24/240 (10%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
E DF+ +G KV GTV +++ LVDI K+ +P E HVE V +
Sbjct: 7 ENLDFH--VGDKVTGTVVKIEDKHVLVDIGYKTEGIIPISELSA---LHVETPNEVVNVG 61
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCR-QLQSE---DVVVKGKVVGANKGGVVAE 206
+ + + DD ++LS R++ E+AW + QS DV VK V KGG+V +
Sbjct: 62 DTLSLTIKKIEDDEVILSKRLVDQEMAWGDLEAKFQSGEVFDVQVKEVV----KGGLVVD 117
Query: 207 VEGLRGFVPFSQISSKSTAEELLGKD--LPLKFVEVDEEQSRLVLSNRKAMADSQAQ--- 261
V G+RGF+P S + + + +D L ++ VE+D EQ++++LS+R + QA
Sbjct: 118 V-GVRGFIPASLVETHFVEDFAAYQDRVLAVQLVELDREQNKVILSHRAVIEQEQASKKS 176
Query: 262 -----LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +G V+ GTVQ + +G F+D+GG++GL+H+SQ+SH+RV+ + V+ G+ +KV
Sbjct: 177 KLLQSLEVGQVLEGTVQRITDFGVFVDLGGMDGLVHISQLSHERVSKASEVVSEGEKIKV 236
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 94/166 (56%), Gaps = 12/166 (7%)
Query: 163 DSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ ++LS R +I+ E A ++ + LQS +V V++G V GV ++ G+ G V SQ+
Sbjct: 157 NKVILSHRAVIEQEQASKKSKLLQSLEVGQVLEGTVQRITDFGVFVDLGGMDGLVHISQL 216
Query: 220 SSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGT 271
S + S A E++ G+ + ++ + +D + R+ LS +K + + ++ G V+ GT
Sbjct: 217 SHERVSKASEVVSEGEKIKVEVLSIDHDNERIALSRKKVLPGPWQGMEEKIQPGQVLEGT 276
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ L +GAF+++ + GL+H+SQI++ + VL+ G + V
Sbjct: 277 VKRLVNFGAFVEVLPNVEGLVHISQIANRHIGTPHEVLEVGQKVTV 322
>gi|340794195|ref|YP_004759658.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
gi|340534105|gb|AEK36585.1| 30S ribosomal protein S1 [Corynebacterium variabile DSM 44702]
Length = 486
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I K
Sbjct: 16 TAEDFLAAIDQTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + D L+LS + QYE AW +L+ +D V G V+
Sbjct: 70 HDVDPGEVVEIGDEVDALVLTKEDKDGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D++++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQELEAKIIELDKQRNNVVLSRRAW 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 249 VVAVGDEVTV 258
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/223 (29%), Positives = 107/223 (47%), Gaps = 22/223 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS--HDRVAD-IATVLQ 309
V L P+GAF+ + GI GL+H+S+++ H V D I TV Q
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHIDVPDQIVTVGQ 340
>gi|357018753|ref|ZP_09081016.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
gi|356481471|gb|EHI14576.1| 30S ribosomal protein S1 [Mycobacterium thermoresistibile ATCC
19527]
Length = 478
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 140/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + D L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 HEVVSV--GDQVEALVLTKEDKDGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGREIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S + V+Q GD + V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHIEVPDQVVQVGDDVMV 346
>gi|6175044|sp|P50889.2|RS1_LEULA RecName: Full=30S ribosomal protein S1
gi|1565296|gb|AAB08978.1| ribosomal protein S1 homolog; sequence specific DNA-binding protein
[Leuconostoc lactis]
Length = 429
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 22/264 (8%)
Query: 71 CRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPT 129
CR ++ +S T EF +ALE ++G V G + DN A+V ++ +P
Sbjct: 27 CRRT-LDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPA 85
Query: 130 QEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQ 185
+E + I +E I G E V+I +D + +LS + + AWE +
Sbjct: 86 REYSDDRNINLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAE 143
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEE 243
+ V KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D
Sbjct: 144 GD--TVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 244 QSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVS 294
+RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS
Sbjct: 202 NARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVS 260
Query: 295 QISHDRVADIATVLQPGDTLKVCL 318
+ISHDRV + A VL GD + V +
Sbjct: 261 EISHDRVKNPADVLTKGDKVDVKI 284
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQS 245
VV+G V G ++ G+ G V S+IS K+ A+ L G + +K + +D E+
Sbjct: 233 VVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKG 292
Query: 246 RLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R
Sbjct: 293 RISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKR 352
Query: 301 VADIATVLQPGDTLKV 316
+ + + VL+ GD ++V
Sbjct: 353 IENPSEVLKSGDKVQV 368
>gi|296112015|ref|YP_003622397.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
gi|339490710|ref|YP_004705215.1| 30S ribosomal protein S1 [Leuconostoc sp. C2]
gi|295833547|gb|ADG41428.1| ribosomal protein S1 [Leuconostoc kimchii IMSNU 11154]
gi|338852382|gb|AEJ30592.1| ribosomal protein S1 [Leuconostoc sp. C2]
Length = 395
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G + G + DN A+V + +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVITGELLAIDNDNQAVVGLPTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D S +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDSIEAVVISNVTSDKEGVSYLLSKKRLDARKAWENLSFGEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERAAQLAEVFSKLTVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL GD + V +
Sbjct: 236 NPADVLTKGDKVNVKI 251
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 126/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGVS+ L + A E F G V V G +VD+ ++P
Sbjct: 82 TSDKEGVSYLLSKKRLDARKAWENLSFGE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 139 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
+ VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 190 EVFSKLTVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVNV 249
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ G V+ GTV+ +K +GAF++I GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGDVLEGTVKRVKDFGAFVEILPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDKVQV 335
>gi|339451714|ref|ZP_08655084.1| 40S ribosomal protein S1 [Leuconostoc lactis KCTC 3528]
Length = 396
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G V G + DN A+V ++ +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D + +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
A VL GD + V +
Sbjct: 236 KPADVLTKGDKVDVKI 251
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 126/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L + A E F G V V G +VD+ ++P
Sbjct: 82 TSDKEGVAYLLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 139 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K A+ L G + +
Sbjct: 190 EVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKKPADVLTKGDKVDV 249
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDKVQV 335
>gi|345857528|ref|ZP_08809962.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfosporosinus sp. OT]
gi|344329356|gb|EGW40700.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfosporosinus sp. OT]
Length = 662
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 97/283 (34%), Positives = 143/283 (50%), Gaps = 27/283 (9%)
Query: 58 EELNQL-FEEAYERCRTAPMEGVSFTLEEFHSAL-----EKYDFNS--------ELGTKV 103
EEL + F+E+ TA + +EE + + E+ D S LGT+V
Sbjct: 239 EELETIWFKESKSAGLTAGASTPDWIIEEVYQKMSEMNEEEMDMASWDKSFQELHLGTRV 298
Query: 104 KGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADD 163
G V N VDI KS +P +E K + + I + VI ENEA
Sbjct: 299 SGKVVKITNDEVFVDIGWKSEGVIPLKELTARKARSEDLLSIGDEISA-VVIRVENEAGH 357
Query: 164 SLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKS 223
+ VLS R E A E ++L ++ KVV KGG+V +V G+RGFVP SQ+
Sbjct: 358 T-VLSKRQADEERAEEHLKKLAETKEEIQAKVVEVVKGGLVVDV-GIRGFVPASQVQLGY 415
Query: 224 TAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQ 273
+ + LG+ L L+ +E D + ++VLS + +A+ QA L G VV G V+
Sbjct: 416 VEDLNQFLGQTLRLRMIEFDPSKRKVVLSQKIILAEEQAIKRKHLLETLKEGDVVTGVVR 475
Query: 274 SLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ +GAF+DIGGI+GLLHVS ++H RV + +L+ GD ++V
Sbjct: 476 RMADFGAFVDIGGIDGLLHVSDMAHTRVQHPSEILKTGDEVEV 518
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 86/164 (52%), Gaps = 12/164 (7%)
Query: 165 LVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
+VLS ++I E A +R L++ E VV G V G ++ G+ G + S ++
Sbjct: 441 VVLSQKIILAEEQAIKRKHLLETLKEGDVVTGVVRRMADFGAFVDIGGIDGLLHVSDMAH 500
Query: 222 KSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQ 273
E+L G ++ +K +++D++ +L L ++ AQ +GS+V G V
Sbjct: 501 TRVQHPSEILKTGDEVEVKVLKLDQQTGKLSLGLKQLQESPWAQAAEKYPVGSLVNGIVV 560
Query: 274 SLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ +GAFI + G++GL+H+SQ++ RV + VL+ GD + V
Sbjct: 561 RVVTFGAFIQLSDGVDGLVHISQLADHRVNKVEDVLKVGDKVSV 604
>gi|404215347|ref|YP_006669542.1| Ribosomal protein S1 [Gordonia sp. KTR9]
gi|403646146|gb|AFR49386.1| Ribosomal protein S1 [Gordonia sp. KTR9]
Length = 492
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|333990445|ref|YP_004523059.1| 30S ribosomal protein S1 [Mycobacterium sp. JDM601]
gi|333486413|gb|AEF35805.1| ribosomal protein S1 RpsA [Mycobacterium sp. JDM601]
Length = 479
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPHEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G+V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLQKGAVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGREIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAEQHVEVPDQVVAVGDDAMV 346
>gi|444433042|ref|ZP_21228188.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
gi|443886106|dbj|GAC69909.1| 30S ribosomal protein S1 [Gordonia soli NBRC 108243]
Length = 493
Score = 121 bits (303), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 21 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 77
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW QL+ +D VKG V+
Sbjct: 78 NEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKEKDEAVKGTVIEVV 135
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 136 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 194
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 195 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 254
Query: 310 PGDTLKV 316
GD + V
Sbjct: 255 VGDEVTV 261
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 127 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 181
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 182 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 240
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 241 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 300
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 301 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGD 343
>gi|359772824|ref|ZP_09276239.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
gi|359310011|dbj|GAB19017.1| 30S ribosomal protein S1 [Gordonia effusa NBRC 100432]
Length = 491
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEV 251
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 252 VQVGDEVTV 260
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPNEVVQVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|378548483|ref|ZP_09823699.1| hypothetical protein CCH26_00290 [Citricoccus sp. CH26A]
Length = 484
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 145/260 (55%), Gaps = 22/260 (8%)
Query: 73 TAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
TAP ++ T E+F +A++ KY FN G V+GTV D L+DI K+ +
Sbjct: 6 TAPQVAINDIGTAEDFLAAIDETIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVI 62
Query: 128 PTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
P++E I H + E + G E +++ + + + L+LS + QYE AW +++
Sbjct: 63 PSRELSIKHDVDPDEVVAV--GDNVEALVLTKEDKEGRLILSKKRAQYERAWGSIEKIKE 120
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
ED VV G V+ KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ +
Sbjct: 121 EDGVVTGTVIEVVKGGLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQELEAKIIELDKNR 179
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+ +VLS R + +Q++ L G V GTV S+ +GAF+D+GG++GL+HVS++
Sbjct: 180 NNVVLSRRAWLEQTQSEVRSNFLHKLEKGQVRTGTVSSIVNFGAFVDLGGVDGLVHVSEL 239
Query: 297 SHDRVADIATVLQPGDTLKV 316
S + + V++ G + V
Sbjct: 240 SWKHIDHPSEVVEVGQEVTV 259
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 108/235 (45%), Gaps = 35/235 (14%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 125 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQELEAKIIELDKNR 179
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V G V G ++ G+
Sbjct: 180 NNVVLSRR------AW--LEQTQSEVRSNFLHKLEKGQVRTGTVSSIVNFGAFVDLGGVD 231
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----- 262
G V S++S K +G+++ ++ +EVD ++ R+ LS KA + QL
Sbjct: 232 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLS-LKATQEDPWQLFARTH 290
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ + V+ D L V
Sbjct: 291 ALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFV 345
>gi|441514491|ref|ZP_20996309.1| 30S ribosomal protein S1 [Gordonia amicalis NBRC 100051]
gi|441450704|dbj|GAC54270.1| 30S ribosomal protein S1 [Gordonia amicalis NBRC 100051]
Length = 488
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQIS--HDRVADIATVLQPGDTLKVC 317
V L P+GAF+ + GI GL+H+S+++ H V D + +KV
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVNDDAMVKVI 349
>gi|343927330|ref|ZP_08766804.1| 30S ribosomal protein S1 [Gordonia alkanivorans NBRC 16433]
gi|343762757|dbj|GAA13730.1| 30S ribosomal protein S1 [Gordonia alkanivorans NBRC 16433]
Length = 489
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQIS--HDRVADIATVLQPGDTLKVC 317
V L P+GAF+ + GI GL+H+S+++ H V D + +KV
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVNDDAMVKVI 349
>gi|377567693|ref|ZP_09796900.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
gi|377535091|dbj|GAB42065.1| 30S ribosomal protein S1 [Gordonia terrae NBRC 100016]
Length = 491
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|441516244|ref|ZP_20997994.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
gi|441456830|dbj|GAC55955.1| 30S ribosomal protein S1 [Gordonia hirsuta DSM 44140 = NBRC 16056]
Length = 491
Score = 120 bits (301), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ D VKG V+
Sbjct: 77 SEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKERDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ LG G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLNKLGKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEVEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V KG V G ++ G+
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRSEFLNKLGKGQVRKGVVSSIVNFGAFVDLGGVD 232
Query: 212 GFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G ++ ++ ++VD ++ R+ LS + D Q
Sbjct: 233 GLVHVSELSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHA 292
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG +V G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 293 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
>gi|453378894|dbj|GAC86206.1| 30S ribosomal protein S1 [Gordonia paraffinivorans NBRC 108238]
Length = 483
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPHEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|404259831|ref|ZP_10963136.1| 30S ribosomal protein S1 [Gordonia namibiensis NBRC 108229]
gi|409393058|ref|ZP_11244557.1| 30S ribosomal protein S1 [Gordonia rubripertincta NBRC 101908]
gi|403197156|dbj|GAB87791.1| 30S ribosomal protein S1 [Gordonia rubripertincta NBRC 101908]
gi|403401696|dbj|GAC01546.1| 30S ribosomal protein S1 [Gordonia namibiensis NBRC 108229]
Length = 488
Score = 120 bits (301), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 TAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 21/230 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQIS--HDRVADIATVLQPGDTLKVC 317
V L P+GAF+ + GI GL+H+S+++ H V D + +KV
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVNDDAMVKVI 349
>gi|300173425|ref|YP_003772591.1| ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|333398562|ref|ZP_08480375.1| ribosomal protein S1 [Leuconostoc gelidum KCTC 3527]
gi|333446748|ref|ZP_08481690.1| ribosomal protein S1 [Leuconostoc inhae KCTC 3774]
gi|406600093|ref|YP_006745439.1| 30S ribosomal protein S1 [Leuconostoc gelidum JB7]
gi|299887804|emb|CBL91772.1| Ribosomal protein S1 [Leuconostoc gasicomitatum LMG 18811]
gi|406371628|gb|AFS40553.1| ribosomal protein S1 [Leuconostoc gelidum JB7]
Length = 397
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 137/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G V G + DN A+V + +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVVIGELLAIDNDNQAVVGLPTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D + +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDSIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFGEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFRNKDIKAQVIEIDPANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERAAQLAEIFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL GD + V +
Sbjct: 236 NPADVLTKGDKVNVKI 251
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 127/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L + A E F G V V G +VD+ ++P
Sbjct: 82 TSDKEGVAYLLSKKRLDARKAWENLSFGE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 139 ASMVAERFVSDLNQFRNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 190 EIFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVNV 249
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ G+V+ GTV+ +K +GAF++I GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQRGPWDEAAEQIAAGAVLEGTVKRVKDFGAFVEILPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GDT++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDTVQV 335
>gi|296164500|ref|ZP_06847071.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295900100|gb|EFG79535.1| 30S ribosomal protein S1 [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length = 480
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|118617252|ref|YP_905584.1| 30S ribosomal protein S1 [Mycobacterium ulcerans Agy99]
gi|183982447|ref|YP_001850738.1| 30S ribosomal protein S1 [Mycobacterium marinum M]
gi|443491265|ref|YP_007369412.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
gi|118569362|gb|ABL04113.1| ribosomal protein S1 RpsA [Mycobacterium ulcerans Agy99]
gi|183175773|gb|ACC40883.1| ribosomal protein S1 RpsA [Mycobacterium marinum M]
gi|442583762|gb|AGC62905.1| 30S ribosomal protein S1 [Mycobacterium liflandii 128FXT]
Length = 481
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDQTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVTV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|212716121|ref|ZP_03324249.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212661488|gb|EEB22063.1| hypothetical protein BIFCAT_01036 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 491
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 138/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFGDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 EVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEADGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQTIKAKILELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQTIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|41407423|ref|NP_960259.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|118464486|ref|YP_882336.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
gi|254775602|ref|ZP_05217118.1| 30S ribosomal protein S1 [Mycobacterium avium subsp. avium ATCC
25291]
gi|417750612|ref|ZP_12398967.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
S397]
gi|41395775|gb|AAS03642.1| RpsA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118165773|gb|ABK66670.1| 30S ribosomal protein S1 [Mycobacterium avium 104]
gi|336457775|gb|EGO36769.1| ribosomal protein S1 [Mycobacterium avium subsp. paratuberculosis
S397]
Length = 480
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|379747704|ref|YP_005338525.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
gi|379755006|ref|YP_005343678.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
gi|379762496|ref|YP_005348893.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
gi|387876359|ref|YP_006306663.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
gi|443306116|ref|ZP_21035904.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
gi|378800068|gb|AFC44204.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
gi|378805222|gb|AFC49357.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-02]
gi|378810438|gb|AFC54572.1| 30S ribosomal protein S1 [Mycobacterium intracellulare MOTT-64]
gi|386789817|gb|AFJ35936.1| 30S ribosomal protein S1 [Mycobacterium sp. MOTT36Y]
gi|442767680|gb|ELR85674.1| 30S ribosomal protein S1 [Mycobacterium sp. H4Y]
Length = 480
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|406031209|ref|YP_006730099.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
gi|405129756|gb|AFS15011.1| 30S ribosomal protein S1 [Mycobacterium indicus pranii MTCC 9506]
Length = 480
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|359425923|ref|ZP_09217013.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
gi|358238782|dbj|GAB06595.1| 30S ribosomal protein S1 [Gordonia amarae NBRC 15530]
Length = 491
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 346
>gi|400537313|ref|ZP_10800846.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
gi|400329342|gb|EJO86842.1| 30S ribosomal protein S1 [Mycobacterium colombiense CECT 3035]
Length = 478
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|377557965|ref|ZP_09787587.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
gi|377524870|dbj|GAB32752.1| 30S ribosomal protein S1 [Gordonia otitidis NBRC 100426]
Length = 487
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|254820984|ref|ZP_05225985.1| 30S ribosomal protein S1 [Mycobacterium intracellulare ATCC 13950]
Length = 479
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|441510773|ref|ZP_20992675.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
gi|441445109|dbj|GAC50636.1| 30S ribosomal protein S1 [Gordonia aichiensis NBRC 108223]
Length = 487
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|403727272|ref|ZP_10947560.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
gi|403204008|dbj|GAB91891.1| 30S ribosomal protein S1 [Gordonia rhizosphera NBRC 16068]
Length = 489
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHV 331
>gi|377574946|ref|ZP_09803956.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
gi|377536455|dbj|GAB49121.1| 30S ribosomal protein S1 [Mobilicoccus pelagius NBRC 104925]
Length = 485
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 132/233 (56%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEF 153
FN G V+G + D L+DI K+ +P++E I H + E G+ G + E
Sbjct: 30 FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVGV--GDEVEA 85
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF
Sbjct: 86 LVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDI-GLRGF 144
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++ LG
Sbjct: 145 LPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQELG 204
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G +KV
Sbjct: 205 KGQVRTGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVKV 257
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 33/234 (14%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V G V G ++ G+
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLQELGKGQVRTGVVSSIVNFGAFVDLGGVD 229
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GLVHVSELSWKHIDHPSEVVEVGQEVKVEVLDVDMDRERVSLSLKATQEDPWQHFARTHA 289
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVDDGIEGLVHISELAERHVELPEQVVQVGQEIFV 343
>gi|375141664|ref|YP_005002313.1| 30S ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
gi|359822285|gb|AEV75098.1| ribosomal protein S1 [Mycobacterium rhodesiae NBB3]
Length = 482
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLTKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VNVGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQL-TKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVNVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|377567051|ref|ZP_09796296.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
gi|377525785|dbj|GAB41461.1| 30S ribosomal protein S1 [Gordonia sputi NBRC 100414]
Length = 489
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 SEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|378718135|ref|YP_005283024.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
gi|375752838|gb|AFA73658.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans VH2]
Length = 527
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 56 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 112
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 113 NEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 170
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 171 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 229
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 230 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 289
Query: 310 PGDTLKV 316
GD + V
Sbjct: 290 VGDEVTV 296
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 162 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 216
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 217 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 275
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 276 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 335
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 336 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 382
>gi|108799971|ref|YP_640168.1| 30S ribosomal protein S1 [Mycobacterium sp. MCS]
gi|119869083|ref|YP_939035.1| 30S ribosomal protein S1 [Mycobacterium sp. KMS]
gi|126435599|ref|YP_001071290.1| 30S ribosomal protein S1 [Mycobacterium sp. JLS]
gi|108770390|gb|ABG09112.1| SSU ribosomal protein S1P [Mycobacterium sp. MCS]
gi|119695172|gb|ABL92245.1| SSU ribosomal protein S1P [Mycobacterium sp. KMS]
gi|126235399|gb|ABN98799.1| SSU ribosomal protein S1P [Mycobacterium sp. JLS]
Length = 479
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VTVGDEVTV 260
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+Q GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELSERHVEVPDQVVQVGDDAMV 346
>gi|258653204|ref|YP_003202360.1| 30S ribosomal protein S1 [Nakamurella multipartita DSM 44233]
gi|258556429|gb|ACV79371.1| RNA binding S1 domain protein [Nakamurella multipartita DSM 44233]
Length = 485
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E I G E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 DPSEVVEI--GEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVSGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R+ +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRQLDAKIIELDKNRNNVVLSRRQWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QLG G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLNQLGKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 252 VEVGQEVTV 260
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 101/208 (48%), Gaps = 19/208 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + + II ++
Sbjct: 126 VSGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRQLDAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL + V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRQWLEQTQSEVRSEFLNQL-GKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG VV G
Sbjct: 240 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQVVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V L P+GAF+ + GI GL+H+S+++
Sbjct: 300 KVTKLVPFGAFVRVYDGIEGLVHISELA 327
>gi|415726676|ref|ZP_11470947.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
gi|388062902|gb|EIK85501.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Dmash]
Length = 499
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ + + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFV 346
>gi|359769917|ref|ZP_09273663.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
gi|359312720|dbj|GAB26496.1| 30S ribosomal protein S1 [Gordonia polyisoprenivorans NBRC 16320]
Length = 527
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 56 EDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 112
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 113 NEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 170
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 171 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 229
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 230 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 289
Query: 310 PGDTLKV 316
GD + V
Sbjct: 290 VGDEVTV 296
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 162 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 216
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 217 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 275
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 276 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 335
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 336 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 382
>gi|297243679|ref|ZP_06927610.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|415709775|ref|ZP_11463354.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
gi|296888430|gb|EFH27171.1| ribosomal protein S1 [Gardnerella vaginalis AMD]
gi|388055777|gb|EIK78662.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6420B]
Length = 500
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ + + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEDVFV 346
>gi|296140136|ref|YP_003647379.1| RNA binding S1 domain-containing protein [Tsukamurella
paurometabola DSM 20162]
gi|296028270|gb|ADG79040.1| RNA binding S1 domain protein [Tsukamurella paurometabola DSM
20162]
Length = 499
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 19/249 (7%)
Query: 84 EEFHSALE---KYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
E+F +A++ KY + ++ GT V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDATIKYFNDGDIVEGTIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 79
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 80 DPSEVVNV--GDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 137
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 138 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 196
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 197 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 256
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 257 VTVGDEVTV 265
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 351
>gi|415728146|ref|ZP_11471719.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
gi|388065284|gb|EIK87775.1| 30S ribosomal protein S1 [Gardnerella vaginalis 6119V5]
Length = 500
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ + + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFV 346
>gi|415718164|ref|ZP_11467146.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
gi|388059993|gb|EIK82694.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1500E]
Length = 500
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ + + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKANEEVFV 346
>gi|283783083|ref|YP_003373837.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
gi|283441435|gb|ADB13901.1| 30S ribosomal protein S1 [Gardnerella vaginalis 409-05]
Length = 500
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFV 346
>gi|415712938|ref|ZP_11465049.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|415713844|ref|ZP_11465297.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
gi|388056538|gb|EIK79402.1| 30S ribosomal protein S1 [Gardnerella vaginalis 55152]
gi|388059567|gb|EIK82298.1| 30S ribosomal protein S1 [Gardnerella vaginalis 1400E]
Length = 500
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFV 346
>gi|415720875|ref|ZP_11468119.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|415724199|ref|ZP_11469798.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
gi|388061136|gb|EIK83793.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703Bmash]
gi|388062890|gb|EIK85493.1| 30S ribosomal protein S1 [Gardnerella vaginalis 00703C2mash]
Length = 501
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFV 346
>gi|308235374|ref|ZP_07666111.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14018 = JCM
11026]
gi|311114868|ref|YP_003986089.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|385801539|ref|YP_005837942.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|415703249|ref|ZP_11459127.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|415705124|ref|ZP_11460395.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|415707058|ref|ZP_11461905.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
gi|417556555|ref|ZP_12207612.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|310946362|gb|ADP39066.1| 30S ribosomal protein S1 [Gardnerella vaginalis ATCC 14019]
gi|333392955|gb|AEF30873.1| 30S ribosomal protein S1 [Gardnerella vaginalis HMP9231]
gi|333602243|gb|EGL13673.1| 30S ribosomal protein S1 [Gardnerella vaginalis 315-A]
gi|388051846|gb|EIK74870.1| 30S ribosomal protein S1 [Gardnerella vaginalis 75712]
gi|388052709|gb|EIK75724.1| 30S ribosomal protein S1 [Gardnerella vaginalis 284V]
gi|388054058|gb|EIK77003.1| 30S ribosomal protein S1 [Gardnerella vaginalis 0288E]
Length = 500
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 139/245 (56%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TEEDFIKAVDSTIKNFDDGDLVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D +V+G V+ A KG
Sbjct: 78 DVVEVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKDADGIVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKILELDKNRNNVVLSRRQFLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 57/227 (25%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + I+ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKILELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQFLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G VV G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQVVKG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++ G+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKGGEEVFV 346
>gi|116618391|ref|YP_818762.1| 30S ribosomal protein S1P [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|381336765|ref|YP_005174540.1| 30S ribosomal protein S1 [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|116097238|gb|ABJ62389.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|356644731|gb|AET30574.1| SSU ribosomal protein S1P [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 396
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 136/255 (53%), Gaps = 20/255 (7%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T E +ALE D ++G V G V DN A++ + +P +E +
Sbjct: 1 MSETNNELLAALESAD-QIKVGDVVTGEVLAVDNDNQAVIGLHTGEEGVVPAREYSDDRN 59
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E + G E V+I +D S +LS + ++ AWE + + V
Sbjct: 60 INLADELKV--GDSVEAVVISNVTSDKEGVSYLLSKKRLEARKAWENLSFGEGD--TVDA 115
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG+V +V G+RGFVP S ++ + S + KD+ + +E+D ++RL+LS
Sbjct: 116 KVINAVRGGLVVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDAAKARLILSR 175
Query: 252 RKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+ A +A +L +G VV G V L +GAF+D+GG++GL+HVS+ISHDRV +
Sbjct: 176 KAVAAQERAAQLAEAFEKLSVGEVVEGKVARLTDFGAFVDLGGVDGLVHVSEISHDRVKN 235
Query: 304 IATVLQPGDTLKVCL 318
A VL G+T+ V +
Sbjct: 236 PADVLTKGETVNVKI 250
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGVS+ L E A E F G V V G +VD+ ++P
Sbjct: 81 TSDKEGVSYLLSKKRLEARKAWENLSFGE--GDTVDAKVINAVRGGLVVDVNG-VRGFVP 137
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ--- 185
A + + V + + +I + A L+LS + + A ER QL
Sbjct: 138 ---ASMVADRFVSDLNQFKNKDIKAQVIEIDAAKARLILSRKAVA---AQERAAQLAEAF 191
Query: 186 ---SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFV 238
S VV+GKV G ++ G+ G V S+IS K+ A+ L G+ + +K +
Sbjct: 192 EKLSVGEVVEGKVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGETVNVKIL 251
Query: 239 EVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHV 293
+D E+ R+ LS + ++ G+V+ GTV+ +K +GAF++I GI GL+HV
Sbjct: 252 ALDAEKGRISLSIKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHV 311
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
SQISH R+ + + VL+ GD ++V
Sbjct: 312 SQISHKRIENPSEVLKSGDKVQV 334
>gi|386867152|ref|YP_006280146.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
gi|385701235|gb|AFI63183.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. animalis
ATCC 25527]
Length = 493
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 141/245 (57%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TVDDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ +D VV+G V+ A KG
Sbjct: 78 DVVKVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKEDDGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + ++ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKVLELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVRG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|229918700|ref|YP_002887346.1| RNA binding S1 domain-containing protein [Exiguobacterium sp. AT1b]
gi|229470129|gb|ACQ71901.1| RNA binding S1 domain protein [Exiguobacterium sp. AT1b]
Length = 382
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 22/237 (9%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF G V GTV +++ AL+DI K+ A LP E + + E+ V +E
Sbjct: 10 DFEINRGQIVTGTVVKIEDKQALIDIGYKTEAILPISEVSSMHLDDLNESLQV---NDEI 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWER-CRQLQSEDV---VVKGKVVGANKGGVVAEVEG 209
+ + D+ +V+S + + E AW+R + +S +V +VK KV KGG+V ++ G
Sbjct: 67 RVKVKKVTDEEVVVSKKDVDAEAAWDRIVEKFESGEVFEVMVKDKV----KGGLVVDI-G 121
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA------- 260
+RGF+P S + S + L + +K VE+D E++R++LS++ + + +
Sbjct: 122 IRGFIPASLVESHFVEDFSSYLNNPITVKVVEIDREKNRVILSHKAVVEEEMSAKKSETL 181
Query: 261 -QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +G V+ GTVQ L +GAF+DIGG++GL+H+S+++H RV + V+ GD +KV
Sbjct: 182 ESLEVGQVIEGTVQRLTDFGAFVDIGGVDGLVHISEMAHSRVEKPSDVVTEGDRVKV 238
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 83/157 (52%), Gaps = 11/157 (7%)
Query: 171 MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKST 224
+++ E++ ++ L+S +V V++G V G ++ G+ G V S+++ K +
Sbjct: 168 VVEEEMSAKKSETLESLEVGQVIEGTVQRLTDFGAFVDIGGVDGLVHISEMAHSRVEKPS 227
Query: 225 AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGA 280
G + +K + +D + ++ LS ++ + ++ G V+ GTV+ L +GA
Sbjct: 228 DVVTEGDRVKVKVLGLDLDNEKVKLSIKETQPGPWETIEGKIQPGDVIEGTVKRLVTFGA 287
Query: 281 FIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+++ + GLLH+SQI++ +A + VL G +KV
Sbjct: 288 FVEVAPQVEGLLHISQIANRHIATPSEVLSEGQEVKV 324
>gi|229084599|ref|ZP_04216869.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
gi|228698749|gb|EEL51464.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-44]
Length = 382
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/233 (35%), Positives = 128/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V GL + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVGLDQTLELKV 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ + DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLG 263
+P S + + + GK L +K VE+D E++R++LS++ + D+ + L
Sbjct: 128 IPASLVELHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVEQELESKKKDAISSLK 187
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISHDRV A VL G ++KV
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHDRVEQPADVLTQGQSVKV 240
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVELHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS +
Sbjct: 170 VVEQELESKKKDAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHDRVEQPA 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGA 280
++L G+ + +K + VD + R+ LS + A + A++ G + G V+ + +GA
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVAAEVKPGDIREGLVKRIVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|262202770|ref|YP_003273978.1| RNA-binding S1 domain-containing protein [Gordonia bronchialis DSM
43247]
gi|262086117|gb|ACY22085.1| RNA binding S1 domain protein [Gordonia bronchialis DSM 43247]
Length = 487
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VAVGDEVTV 260
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|451944076|ref|YP_007464712.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
gi|451903463|gb|AGF72350.1| 30S ribosomal protein S1 [Corynebacterium halotolerans YIM 70093 =
DSM 44683]
Length = 486
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 138/248 (55%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
EEF +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 18 EEFLAAVDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ V + +E +++ + + + L+LS + QYE AW QLQ+ D V G V+
Sbjct: 72 VDPDEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGNIEQLQANDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKHRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 TVGDEVTV 258
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|403069996|ref|ZP_10911328.1| 30S ribosomal protein S1 [Oceanobacillus sp. Ndiop]
Length = 377
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 16/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V GTV + + LVDI K+ LP E HVE G V + + +
Sbjct: 13 VGDTVTGTVIKLEEKQVLVDIGYKTEGILPIGELSS---LHVETTGDVVKEGDSVTLKVK 69
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD ++LS + + E AWE + V + V KGG+V +V GLRGF+P S
Sbjct: 70 KVEDDEIILSKKAVDSESAWEDLEKKYESGEVFETVVKEIVKGGLVVDV-GLRGFIPASL 128
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSV 267
+ + + E L K L +K ++D +Q+R++LS+R A+A+ +A + G V
Sbjct: 129 VETHFVEDFSEYLNKPLTVKIADLDRDQNRIILSHR-AVAEEEASAKKNDILQSIEAGQV 187
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GTVQ + +GAF+D+GG++GL+H+SQ++H+ VA + V+ GD +KV
Sbjct: 188 MEGTVQRITSFGAFVDLGGVDGLVHISQLAHEHVAKASDVVSEGDKIKV 236
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 165 LVLSLRMIQYELAWERCRQ-LQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++LS R + E A + LQS + V++G V G ++ G+ G V SQ++
Sbjct: 159 IILSHRAVAEEEASAKKNDILQSIEAGQVMEGTVQRITSFGAFVDLGGVDGLVHISQLAH 218
Query: 222 KSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIGTVQ 273
+ A+ +++ G + ++ + VD + R+ LS++ + D Q+++ GS + GTV+
Sbjct: 219 EHVAKASDVVSEGDKIKVEILSVDRDNERISLSHKNTLPGPWTDIQSRVASGSTIEGTVK 278
Query: 274 SLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +GAF++I G+ GL+H+SQI++ +A VL+ G + V
Sbjct: 279 RLVNFGAFVEILPGVEGLVHISQIANRHIATPQEVLEVGQKVNV 322
>gi|291545113|emb|CBL18222.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and
DMAPP forming) [Ruminococcus champanellensis 18P13]
Length = 661
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 134/245 (54%), Gaps = 13/245 (5%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
+F +ALE+ G +VKG V +N A+VD+ K + Y+P E K +
Sbjct: 293 DFEAALEQSFKKIHTGERVKGYVVSVNNNEAIVDVGTKHTGYVPLDELTDDPSKKPADL- 351
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
+ PG + + ++ N+ + ++LS R + + +E + + E ++KG V A KGG++
Sbjct: 352 VQPGDELDLIVTKINDPEGYVLLSKRRVDELVGFENIAKAKEEGTILKGIVQNAVKGGLI 411
Query: 205 AEVEGLRGFVPFSQISSKSTAEELLGKDLP--LKFVEVDEEQSRLVLSNRKAMADSQAQL 262
+G+R FVP SQ A+ + K+ P LK +EV+E++ R V S KA+A +Q
Sbjct: 412 VSCDGVRVFVPASQSGLGRDADLSVLKNKPVELKIIEVNEQRRRAVGS-IKAVAKAQKDA 470
Query: 263 G---------IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+G V G V+SL YGAF+D+GGI+G++H+S++S R+ + V++ GD
Sbjct: 471 ARAKFWETAEVGQVFTGEVKSLTSYGAFVDLGGIDGMVHISELSWKRIKHPSEVVKVGDM 530
Query: 314 LKVCL 318
L+V +
Sbjct: 531 LEVYI 535
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 71/148 (47%), Gaps = 13/148 (8%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDL 233
WE Q V G+V G ++ G+ G V S++S K +G L
Sbjct: 476 WETAEVGQ----VFTGEVKSLTSYGAFVDLGGIDGMVHISELSWKRIKHPSEVVKVGDML 531
Query: 234 PLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGIN 288
+ +D E +R+ L +K + A+ +G VV TV S+ +GAF I G++
Sbjct: 532 EVYIKALDPEANRISLGYKKKEDNPWEQFLAKYHVGDVVDATVVSITQFGAFAQIMDGVD 591
Query: 289 GLLHVSQISHDRVADIATVLQPGDTLKV 316
GL+H+SQI++ RV ++ +L G ++V
Sbjct: 592 GLIHISQIANQRVDNVKDILSVGQQVQV 619
>gi|407718428|ref|YP_006795833.1| 30S ribosomal protein S1 [Leuconostoc carnosum JB16]
gi|407242184|gb|AFT81834.1| 30S ribosomal protein S1 [Leuconostoc carnosum JB16]
Length = 396
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 137/256 (53%), Gaps = 21/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T EF +ALE ++G + G + DN A++ + +P +E +
Sbjct: 1 MSETNNEFLAALESAADQIKVGDVITGELLAIDNDNQAVIGLPTGEEGVVPAREYSDDRN 60
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E I G E V+I +D S +LS + + AWE + + V
Sbjct: 61 INLADELKI--GDSIEAVVISNVTSDKEGVSYLLSKKRLDARKAWENLNFGEGD--TVDA 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D +RL+LS
Sbjct: 117 KVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPANARLILS- 175
Query: 252 RKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 176 RKAVAAQERSAHLAEVFSKLTVGDVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 235
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL G+ + V +
Sbjct: 236 NPADVLSKGEKVNVKI 251
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 76/266 (28%), Positives = 128/266 (48%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGVS+ L + A E +F G V V G +VD+ ++P
Sbjct: 82 TSDKEGVSYLLSKKRLDARKAWENLNFGE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 138
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER L
Sbjct: 139 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERSAHLA 189
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPL 235
+ VV+G V G ++ G+ G V S+IS K+ A+ L G+ + +
Sbjct: 190 EVFSKLTVGDVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLSKGEKVNV 249
Query: 236 KFVEVDEEQSRLVLSNRKAMA---DSQAQ-LGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS + D A+ + G+V+ GTV+ +K +GAF+++ GI GL
Sbjct: 250 KILALDTEKGRISLSIKATQPGPWDKAAEEIAAGAVLEGTVKRVKDFGAFVEVLPGIEGL 309
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 310 VHVSQISNKRIENPSEVLKSGDKIQV 335
>gi|453363488|dbj|GAC80781.1| 30S ribosomal protein S1 [Gordonia malaquae NBRC 108250]
Length = 491
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 20 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 73
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ + +V G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 74 VDPSEVVTVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEV 133
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 134 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLE 192
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 193 QTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 252
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 253 TVGDEVTV 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEVEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 346
>gi|385998404|ref|YP_005916702.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
gi|344219450|gb|AEN00081.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CTRI-2]
Length = 481
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|31792816|ref|NP_855309.1| 30S ribosomal protein S1 [Mycobacterium bovis AF2122/97]
gi|121637537|ref|YP_977760.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224990012|ref|YP_002644699.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
gi|378771371|ref|YP_005171104.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
gi|449063688|ref|YP_007430771.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
gi|31618406|emb|CAD96324.1| PROBABLE RIBOSOMAL PROTEIN S1 RPSA [Mycobacterium bovis AF2122/97]
gi|121493184|emb|CAL71655.1| Probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773125|dbj|BAH25931.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Tokyo 172]
gi|341601555|emb|CCC64228.1| probable ribosomal protein S1 rpsA [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|356593692|gb|AET18921.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Mexico]
gi|449032196|gb|AGE67623.1| 30S ribosomal protein S1 [Mycobacterium bovis BCG str. Korea 1168P]
Length = 481
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|433630724|ref|YP_007264352.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070010]
gi|433634681|ref|YP_007268308.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070017]
gi|432162317|emb|CCK59693.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070010]
gi|432166274|emb|CCK63767.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070017]
Length = 481
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|433641768|ref|YP_007287527.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070008]
gi|432158316|emb|CCK55607.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140070008]
Length = 481
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|15608768|ref|NP_216146.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
gi|15841085|ref|NP_336122.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
gi|148661425|ref|YP_001282948.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|148822837|ref|YP_001287591.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis F11]
gi|167968417|ref|ZP_02550694.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|253799332|ref|YP_003032333.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 1435]
gi|254231831|ref|ZP_04925158.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
gi|254364480|ref|ZP_04980526.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
Haarlem]
gi|254550636|ref|ZP_05141083.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289443082|ref|ZP_06432826.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
gi|289447238|ref|ZP_06436982.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
gi|289569675|ref|ZP_06449902.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
gi|289574297|ref|ZP_06454524.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
gi|289745933|ref|ZP_06505311.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
gi|289750175|ref|ZP_06509553.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
gi|289753717|ref|ZP_06513095.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
gi|289757732|ref|ZP_06517110.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
gi|289761778|ref|ZP_06521156.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
gi|294996579|ref|ZP_06802270.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis 210]
gi|297634183|ref|ZP_06951963.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN 4207]
gi|297731170|ref|ZP_06960288.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN R506]
gi|298525126|ref|ZP_07012535.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
94_M4241A]
gi|306784360|ref|ZP_07422682.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
gi|306788728|ref|ZP_07427050.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
gi|306793065|ref|ZP_07431367.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
gi|306797447|ref|ZP_07435749.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
gi|307084210|ref|ZP_07493323.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
gi|313658502|ref|ZP_07815382.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis KZN V2475]
gi|339631686|ref|YP_004723328.1| 30S ribosomal protein S1 [Mycobacterium africanum GM041182]
gi|375296577|ref|YP_005100844.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
gi|385991029|ref|YP_005909327.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
gi|385994631|ref|YP_005912929.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
gi|392386301|ref|YP_005307930.1| rpsA [Mycobacterium tuberculosis UT205]
gi|392432788|ref|YP_006473832.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
gi|397673484|ref|YP_006515019.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
gi|422812616|ref|ZP_16861000.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
gi|424803967|ref|ZP_18229398.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
gi|424947350|ref|ZP_18363046.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
gi|6226090|sp|O06147.1|RS1_MYCTU RecName: Full=30S ribosomal protein S1
gi|13881299|gb|AAK45936.1| ribosomal protein S1 [Mycobacterium tuberculosis CDC1551]
gi|124600890|gb|EAY59900.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis C]
gi|134149994|gb|EBA42039.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis str.
Haarlem]
gi|148505577|gb|ABQ73386.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Ra]
gi|148721364|gb|ABR05989.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis F11]
gi|253320835|gb|ACT25438.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 1435]
gi|289416001|gb|EFD13241.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T46]
gi|289420196|gb|EFD17397.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CPHL_A]
gi|289538728|gb|EFD43306.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis K85]
gi|289543429|gb|EFD47077.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T17]
gi|289686461|gb|EFD53949.1| ribosomal protein S1 [Mycobacterium tuberculosis 02_1987]
gi|289690762|gb|EFD58191.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis T92]
gi|289694304|gb|EFD61733.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis EAS054]
gi|289709284|gb|EFD73300.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis GM 1503]
gi|289713296|gb|EFD77308.1| ribosomal protein S1 [Mycobacterium tuberculosis T85]
gi|298494920|gb|EFI30214.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis
94_M4241A]
gi|308330908|gb|EFP19759.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu003]
gi|308334743|gb|EFP23594.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu004]
gi|308338520|gb|EFP27371.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu005]
gi|308342191|gb|EFP31042.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu006]
gi|308366155|gb|EFP55006.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis SUMu012]
gi|323719890|gb|EGB29003.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis CDC1551A]
gi|326903243|gb|EGE50176.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis W-148]
gi|328459082|gb|AEB04505.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 4207]
gi|339294585|gb|AEJ46696.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5079]
gi|339298222|gb|AEJ50332.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis CCDC5180]
gi|339331042|emb|CCC26714.1| putative ribosomal protein S1 RPSA [Mycobacterium africanum
GM041182]
gi|358231865|dbj|GAA45357.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis NCGM2209]
gi|378544852|emb|CCE37127.1| rpsA [Mycobacterium tuberculosis UT205]
gi|379027853|dbj|BAL65586.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis str. Erdman =
ATCC 35801]
gi|392054197|gb|AFM49755.1| 30S ribosomal protein S1 rpsA [Mycobacterium tuberculosis KZN 605]
gi|395138389|gb|AFN49548.1| 30S ribosomal protein S1 [Mycobacterium tuberculosis H37Rv]
gi|440581096|emb|CCG11499.1| putative RIBOSOMAL protein S1 RPSA [Mycobacterium tuberculosis
7199-99]
gi|444895138|emb|CCP44394.1| 30S ribosomal protein S1 RpsA [Mycobacterium tuberculosis H37Rv]
Length = 481
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|359420845|ref|ZP_09212776.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
gi|358243118|dbj|GAB10845.1| 30S ribosomal protein S1 [Gordonia araii NBRC 100433]
Length = 487
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPSEVVNV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEV 251
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 252 VTVGDEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPNEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGD 342
>gi|365157688|ref|ZP_09353938.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
gi|363623000|gb|EHL74136.1| ribosomal protein S1 [Bacillus smithii 7_3_47FAA]
Length = 378
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 127/229 (55%), Gaps = 15/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
+G KVKGTV +++ V+I +K +P E H+E+A + + ++
Sbjct: 15 VGDKVKGTVIKVEDKQVQVEIENSKKDGIIPISELSSL---HIEKASDAVNVGDTLELVI 71
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
E DD VLS R + E AW+ R+ + + +V KGG+V ++ G+RGFVP S
Sbjct: 72 TKEEDDLYVLSKRKVDAEKAWDLMRKRFENGEIFEAEVKEVVKGGLVVDL-GVRGFVPAS 130
Query: 218 QISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSV 267
+ E+ GK L K VE+DEE++RL+LS+R + + + ++ G V
Sbjct: 131 LVEDYYVEDFEDYKGKTLTFKIVELDEEKNRLILSHRAVVEEEKQKAKKKLLDEIQPGDV 190
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G VQ L +GAF+DIGG++GL+H+SQ+SH+ V + V++ G+ +KV
Sbjct: 191 LEGKVQRLTDFGAFVDIGGVDGLVHISQLSHEHVEKPSDVVKEGEIVKV 239
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VD+ + ++P A + + +VE+ G F
Sbjct: 105 FEAEVKEVVKG--------GLVVDLGVR--GFVP---ASLVEDYYVEDFEDYKGKTLTFK 151
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLR 211
I+ +E + L+LS R + E + ++L E V++GKV G ++ G+
Sbjct: 152 IVELDEEKNRLILSHRAVVEEEKQKAKKKLLDEIQPGDVLEGKVQRLTDFGAFVDIGGVD 211
Query: 212 GFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQ+S K + G+ + +K + VD + R+ LS ++ + +
Sbjct: 212 GLVHISQLSHEHVEKPSDVVKEGEIVKVKVLSVDRDNERISLSIKETIPGPWENIAEKAP 271
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GSV+ GTV+ L YGAF+++ G+ GL+H+SQISH + VL G ++V
Sbjct: 272 VGSVLKGTVKRLVSYGAFVEVFPGVEGLVHISQISHKHIGTPHEVLSEGQEVEV 325
>gi|340626635|ref|YP_004745087.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
140010059]
gi|433626722|ref|YP_007260351.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140060008]
gi|340004825|emb|CCC43970.1| putative ribosomal protein S1 RPSA [Mycobacterium canettii CIPT
140010059]
gi|432154328|emb|CCK51560.1| Putative ribosomal protein S1 RpsA [Mycobacterium canettii CIPT
140060008]
Length = 481
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|418053089|ref|ZP_12691165.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
gi|353179450|gb|EHB45010.1| RNA binding S1 domain protein [Mycobacterium rhodesiae JS60]
Length = 484
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|183601485|ref|ZP_02962855.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219683973|ref|YP_002470356.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191015|ref|YP_002968409.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|241196421|ref|YP_002969976.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|384194007|ref|YP_005579753.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|384195573|ref|YP_005581318.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|387820881|ref|YP_006300924.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
B420]
gi|387822557|ref|YP_006302506.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bi-07]
gi|423679541|ref|ZP_17654417.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|183219091|gb|EDT89732.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
HN019]
gi|219621623|gb|ACL29780.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
AD011]
gi|240249407|gb|ACS46347.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
Bl-04]
gi|240250975|gb|ACS47914.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
DSM 10140]
gi|295794004|gb|ADG33539.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
V9]
gi|345282866|gb|AEN76720.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis
BLC1]
gi|366041185|gb|EHN17689.1| 30S ribosomal protein S1 [Bifidobacterium animalis subsp. lactis BS
01]
gi|386653582|gb|AFJ16712.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
B420]
gi|386655165|gb|AFJ18294.1| SSU ribosomal protein S1p [Bifidobacterium animalis subsp. lactis
Bi-07]
Length = 493
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 140/245 (57%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F A++ N + G V+GTV D+ L+DI K+ +P++E I K +
Sbjct: 18 TVDDFIKAVDSTIKNFDDGDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKKDVDPD 77
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ V E V+ E++ + L+LS + QYE AW +++ D VV+G V+ A KG
Sbjct: 78 DVVKVGDTIEALVVTKEDK-EGRLILSKKRAQYERAWGDIEKIKENDGVVEGTVIEAVKG 136
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R+ + ++Q
Sbjct: 137 GLIVDI-GLRGFLPASLVEMRRVRDLSPYIGQKIKAKVLELDKNRNNVVLSRRQYLEETQ 195
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++ G
Sbjct: 196 SEVRETFLSQLKKGQIREGVVSSIVNFGAFVDLGGVDGLIHVSELSWKHIDHPSEVVKVG 255
Query: 312 DTLKV 316
D + V
Sbjct: 256 DKVTV 260
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/227 (24%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G +VDI + +LP A + +++ V + G K + ++ ++
Sbjct: 126 VEGTVIEAVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLSPYIGQKIKAKVLELDKNR 180
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ QL+ + +G V G ++ G+ G + S+
Sbjct: 181 NNVVLSRRQYLEETQSEVRETFLSQLKKGQIR-EGVVSSIVNFGAFVDLGGVDGLIHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G + ++ ++VD ++ R+ LS + D + G +V G
Sbjct: 240 LSWKHIDHPSEVVKVGDKVTVEVLDVDLDRERISLSLKATQEDPWQRFARTHVPGQIVRG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V + +G FI + GI GL+H+S++++ V + TV++PG+ + V
Sbjct: 300 KVTKIVQFGVFISVEDGIEGLVHISELANRHVENPETVVKPGEEVFV 346
>gi|227548120|ref|ZP_03978169.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
44291]
gi|227079782|gb|EEI17745.1| 30S ribosomal protein S1 [Corynebacterium lipophiloflavum DSM
44291]
Length = 489
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V GTV D+ L+DI K+ +PT+E I H I
Sbjct: 18 EDFLAAVDATIKY-FND--GDIVTGTVVKVDHDEVLLDIGYKTEGVIPTRELSIKHDIDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + + +++ + + + L+LS + QYE AW +LQ+ D V G V+
Sbjct: 75 DEVVEV--GDEVDALVLTKEDKEGRLILSKKRAQYERAWGTIEELQNNDQPVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKHRNNVVLSRRAYLEE 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSAVRSDFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/212 (26%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKHR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q + + QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAYLEETQSAVRSDFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVQEGIEGLVHISELAQRHV 329
>gi|330719102|ref|ZP_08313702.1| SSU ribosomal protein S1P [Leuconostoc fallax KCTC 3537]
Length = 395
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 135/255 (52%), Gaps = 20/255 (7%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T E +ALE D ++G V G V DN A++ + +P +E +
Sbjct: 1 MSETNNELLAALESAD-QIKVGDVVTGEVVAIDNDNQAVIGLHTGEEGVVPAREYSDDRN 59
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E + G E V+I +D + +LS + + AWE + + V
Sbjct: 60 INLADELKV--GDTVEAVVINNVTSDKEGVAYLLSKKRLDARKAWENLNFAEGD--TVDA 115
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KVV A +GG+V VEG+RGFVP S ++ + S + KD+ + +E+D +SRL+LS
Sbjct: 116 KVVNAVRGGLVVTVEGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPAKSRLILSR 175
Query: 252 RKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+ +A A+ L +G VV GTV L +GAFID+GG++GL+HVS+IS+DRV +
Sbjct: 176 KAVIAQEHAEKIAEVFGKLSVGEVVEGTVARLADFGAFIDLGGVDGLVHVSEISYDRVKN 235
Query: 304 IATVLQPGDTLKVCL 318
A VL G+ + V +
Sbjct: 236 PADVLSRGEKVNVKI 250
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/136 (38%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQS 245
VV+G V G ++ G+ G V S+IS K+ A+ L G+ + +K + +DEE+
Sbjct: 199 VVEGTVARLADFGAFIDLGGVDGLVHVSEISYDRVKNPADVLSRGEKVNVKILALDEEKG 258
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + ++ G+V+ GTV+ +K +GAF++I GI GL+HVSQISH R
Sbjct: 259 RISLSIKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLIHVSQISHKR 318
Query: 301 VADIATVLQPGDTLKV 316
V + A VL+ GD +KV
Sbjct: 319 VENPADVLKSGDKVKV 334
>gi|441520462|ref|ZP_21002129.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
gi|441459908|dbj|GAC60090.1| 30S ribosomal protein S1 [Gordonia sihwensis NBRC 108236]
Length = 489
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAVDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVTV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEVEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 346
>gi|326382653|ref|ZP_08204344.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
gi|326198772|gb|EGD55955.1| 30S ribosomal protein S1 [Gordonia neofelifaecis NRRL B-59395]
Length = 490
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 80/247 (32%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAVDSTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVTV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEVEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 194 TQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEVEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 346
>gi|184200835|ref|YP_001855042.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
gi|183581065|dbj|BAG29536.1| 30S ribosomal protein S1 [Kocuria rhizophila DC2201]
Length = 493
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I H I
Sbjct: 15 TEEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDI 71
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ + G + E +++ + + + L+LS + QYE AW +++ +D VV G V+
Sbjct: 72 NPDDVVAV--GDEVEALVLPKEDKEGRLILSKKRAQYERAWGDIEKIKEDDGVVTGTVIE 129
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 130 VVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWL 188
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V GTV S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 189 EQTQSEVRANFLQQLQKGQVRTGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 248
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 249 VEVGQEVTV 257
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 22/217 (10%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQLEAKIIELDKNR 177
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ +QLQ V G V G ++ G+ G V S+
Sbjct: 178 NNVVLSRRAWLEQTQSEVRANFLQQLQKGQVRT-GTVSSIVNFGAFVDLGGVDGLVHVSE 236
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVI 269
+S K +G+++ ++ ++VD ++ R+ LS KA + QL +G VV
Sbjct: 237 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHALGQVVP 295
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
G V L P+GAF+ + GI GL+H+S+++ R D+A
Sbjct: 296 GKVTKLVPFGAFVRVEDGIEGLVHISELAQ-RHVDMA 331
>gi|255324624|ref|ZP_05365741.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
gi|311740509|ref|ZP_07714336.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
33035]
gi|255298530|gb|EET77830.1| 30S ribosomal protein S1 [Corynebacterium tuberculostearicum SK141]
gi|311304029|gb|EFQ80105.1| 30S ribosomal protein S1 [Corynebacterium pseudogenitalium ATCC
33035]
Length = 486
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 142/248 (57%), Gaps = 18/248 (7%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E + G + + +++ + + + L+LS + QYE AW +LQ+++ V G V+
Sbjct: 73 NPDEV-VEVGDEVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAYLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 TVGDEVTV 258
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAYLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|312898940|ref|ZP_07758328.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
gi|310620102|gb|EFQ03674.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Megasphaera
micronuciformis F0359]
Length = 660
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 85/279 (30%), Positives = 139/279 (49%), Gaps = 34/279 (12%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDF--NSELGTKVKGTVFCTDNRGALVD 118
+ + +E + EG EE L++YD+ N + G V GTV ++ A V
Sbjct: 261 DWIIQEVVKMMEDLQAEGTEVMSEEL---LDQYDYEENPKKGDVVTGTVISVNDDAAYVS 317
Query: 119 ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN---------EADDSLVLSL 169
I K+ A LP +E + P +FV +G+ + + S+V+SL
Sbjct: 318 IGTKAEAVLPKKEMAVP----------APEKASDFVQVGQELTVEIANNIKEEGSIVVSL 367
Query: 170 RMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEE 227
++ W+ R D +V+ NK G+V ++ LRGF+P SQ + + +
Sbjct: 368 VRMKKVEDWKEVRAAFEADELVECVGKETNKAGLVVAIKSLRGFIPLSQGDVRFVKSLDY 427
Query: 228 LLGKDLPLKFVEVDEEQSRLVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYG 279
L+G+ +K +++DE ++RLVLS + K A+ + GSVV GTV + PYG
Sbjct: 428 LVGETFTVKVIDMDEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYG 487
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
AFID+GG+ GLLH+S IS R+ + VL+ G+ ++V +
Sbjct: 488 AFIDLGGVEGLLHISDISWKRINAVEDVLEVGEKVEVLV 526
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 93/174 (53%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
+I +E + LVLS + +++ E +R L++ E VV+G VV G ++ G+
Sbjct: 437 VIDMDEHKNRLVLSRKAVLEVEREKKRAEVLKTIEEGSVVEGTVVKVMPYGAFIDLGGVE 496
Query: 212 GFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLG 263
G + S IS K + E++L G+ + + + DEE++R+ LS + + + +
Sbjct: 497 GLLHISDISWKRINAVEDVLEVGEKVEVLVQKFDEERNRISLSMKALQKNPWIVAVEKFE 556
Query: 264 IGSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V+ L P+GA + I + GLLHVS+++ R A + ++ GD L V
Sbjct: 557 VGDVVKGEVKKLLPFGAILAIDPELQGLLHVSELTDKRGAVVKDLIAVGDVLDV 610
>gi|449094784|ref|YP_007427275.1| 30S ribosomal protein [Bacillus subtilis XF-1]
gi|449028699|gb|AGE63938.1| 30S ribosomal protein [Bacillus subtilis XF-1]
Length = 382
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQEFLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQEFLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|54023865|ref|YP_118107.1| 30S ribosomal protein S1 [Nocardia farcinica IFM 10152]
gi|54015373|dbj|BAD56743.1| putative ribosomal protein S1 [Nocardia farcinica IFM 10152]
Length = 487
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 17 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 73
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 74 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 131
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 132 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 190
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 191 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 250
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 251 VEVGNEVTV 259
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 345
>gi|452909695|ref|ZP_21958379.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
gi|452835067|gb|EME37864.1| SSU ribosomal protein S1p [Kocuria palustris PEL]
Length = 498
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I H I
Sbjct: 15 TEEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDI 71
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
++ + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 72 N--PDSVVAVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVNGTVIE 129
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 130 VVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWL 188
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + V
Sbjct: 189 EQTQSEVRSDFLNKLQKGQVRTGHVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPGEV 248
Query: 308 LQPGDTLKV 316
++ G +KV
Sbjct: 249 VEVGQEVKV 257
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 21/228 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VNGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQLEAKIIELDKNR 177
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ + +LQ V G V G ++ G+ G V S+
Sbjct: 178 NNVVLSRRAWLEQTQSEVRSDFLNKLQKGQVRT-GHVSSIVNFGAFVDLGGVDGLVHVSE 236
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVI 269
+S K +G+++ ++ ++VD ++ R+ LS KA + QL +G VV
Sbjct: 237 LSWKHIDHPGEVVEVGQEVKVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHALGQVVP 295
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V L P+GAF+ + GI GL+H+S+++ V V+ G+ L V
Sbjct: 296 GKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVDMAEQVVSVGEELFV 343
>gi|213965205|ref|ZP_03393402.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
gi|213952057|gb|EEB63442.1| 30S ribosomal protein S1 [Corynebacterium amycolatum SK46]
Length = 487
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 139/250 (55%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 16 TAEDFLAAVDSTMKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + V + +E +++ + + + L+LS + QYE AW QL+ D V G V+
Sbjct: 70 HDVDPDEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEQLKENDEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKNRNNVVLSRRAW 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+Q GD + V
Sbjct: 249 VVQVGDEVTV 258
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKNR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ +EVD + R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVQVGDEVTVEVLEVDLNRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V L P+GAF+ + GI GL+H+S+++
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELA 325
>gi|407278428|ref|ZP_11106898.1| 30S ribosomal protein S1 [Rhodococcus sp. P14]
Length = 487
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 252 VEVGNEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|227431694|ref|ZP_03913724.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227352518|gb|EEJ42714.1| ribosomal protein S1 [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 396
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 136/255 (53%), Gaps = 20/255 (7%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T E +ALE D ++G V G V DN A++ + +P +E +
Sbjct: 1 MSETNNELLAALESAD-QIKVGDVVTGEVLAVDNDNQAVIGLHTGEEGVVPAREYSDDRN 59
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E + +K V+I +D S +LS + ++ AWE + + V
Sbjct: 60 INLADELKVGDSVKA--VVISNVTSDKEGVSYLLSKKRLEARKAWENLSFGEGD--TVDA 115
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG+V +V G+RGFVP S ++ + S + KD+ + +E+D ++RL+LS
Sbjct: 116 KVINAVRGGLVVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDAAKARLILSR 175
Query: 252 RKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
+ A +A +L +G VV G V L +GAF+D+GG++GL+H+S+ISHDRV +
Sbjct: 176 KAVAAQERAAQLAEAFEKLSVGEVVEGKVARLTDFGAFVDLGGVDGLVHISEISHDRVKN 235
Query: 304 IATVLQPGDTLKVCL 318
A VL G+T+ V +
Sbjct: 236 PADVLTKGETVNVKI 250
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 125/263 (47%), Gaps = 28/263 (10%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGVS+ L E A E F G V V G +VD+ ++P
Sbjct: 81 TSDKEGVSYLLSKKRLEARKAWENLSFGE--GDTVDAKVINAVRGGLVVDVNG-VRGFVP 137
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ--- 185
A + + V + + +I + A L+LS + + A ER QL
Sbjct: 138 ---ASMVADRFVSDLNQFKNKDIKAQVIEIDAAKARLILSRKAVA---AQERAAQLAEAF 191
Query: 186 ---SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFV 238
S VV+GKV G ++ G+ G V S+IS K+ A+ L G+ + +K +
Sbjct: 192 EKLSVGEVVEGKVARLTDFGAFVDLGGVDGLVHISEISHDRVKNPADVLTKGETVNVKIL 251
Query: 239 EVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHV 293
+D E+ R+ LS + ++ G+V+ GTV+ +K +GAF++I GI GL+HV
Sbjct: 252 ALDAEKGRISLSIKATQPGPWDKVAEEAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHV 311
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
SQISH R+ + + VL+ GD ++V
Sbjct: 312 SQISHKRIENPSEVLKSGDKVQV 334
>gi|325674222|ref|ZP_08153911.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
gi|325554902|gb|EGD24575.1| 30S ribosomal protein S1 [Rhodococcus equi ATCC 33707]
Length = 528
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 56 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 112
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 113 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 170
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 171 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 229
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 230 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 289
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 290 VEVGNEVTV 298
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 164 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 218
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 219 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 277
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 278 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 337
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 338 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGD 380
>gi|417002438|ref|ZP_11941827.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479579|gb|EGC82675.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 687
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 134/246 (54%), Gaps = 15/246 (6%)
Query: 81 FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
FT EEF ++LE K + E+ VKGTV + VDI ++ + E +
Sbjct: 277 FTKEEFMNSLEDSLKKVYPKEI---VKGTVIDVKDDEIFVDIQFRADGIIKLDEMTEEER 333
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
K + + + G + + +I ++ + ++ LS R ++ W+ + D +V G+V G
Sbjct: 334 KDPKSSFNI-GDEIDVYVIKLDDGEGNVALSTRRVEGMRVWKDLAEKAENDELVHGEVTG 392
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
NKGG+ V+G+ GFVP SQI++ ++ +G+D LK V +DE ++RLVLS RK +
Sbjct: 393 FNKGGLTVNVDGVNGFVPASQIATYFVKNFKKFVGEDWDLKIVSIDERKNRLVLS-RKDV 451
Query: 256 ADSQ-----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+ Q +L G VV G V L +GAF+++ G++GLLHVS I+ RV + VL
Sbjct: 452 VEGQLDELWDELEEGQVVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPSDVLNV 511
Query: 311 GDTLKV 316
GD ++V
Sbjct: 512 GDEVEV 517
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 104/217 (47%), Gaps = 19/217 (8%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
N+G L + ++P + + +K+ ++ G + I+ +E + LVLS +
Sbjct: 394 NKGGLTVNVDGVNGFVPASQIATYFVKNFKK---FVGEDWDLKIVSIDERKNRLVLSRKD 450
Query: 172 I---QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL 228
+ Q + W+ + Q VV GKV G EV GL G + S I+
Sbjct: 451 VVEGQLDELWDELEEGQ----VVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPS 506
Query: 229 ----LGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGA 280
+G ++ +K +++++E++R+ L + K Q +G VV G V +L +GA
Sbjct: 507 DVLNVGDEVEVKILKLNKEKNRISLGRKQLLEKPFEAFANQHEVGDVVTGKVVNLLDFGA 566
Query: 281 FIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+++ G+ GL+HVS+IS + V + L GD ++V
Sbjct: 567 FVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEV 603
>gi|453075291|ref|ZP_21978079.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
gi|452763581|gb|EME21862.1| 30S ribosomal protein S1 [Rhodococcus triatomae BKS 15-14]
Length = 490
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 252 VEVGNEVTV 260
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|350266463|ref|YP_004877770.1| hypothetical protein GYO_2519 [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349599350|gb|AEP87138.1| conserved hypothetical protein [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 382
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKSGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|452955266|gb|EME60665.1| 30S ribosomal protein S1 [Rhodococcus ruber BKS 20-38]
Length = 487
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 252 VEVGNEVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|321311760|ref|YP_004204047.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|384175896|ref|YP_005557281.1| hypothetical protein I33_2350 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|386758871|ref|YP_006232087.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|428279757|ref|YP_005561492.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|430758469|ref|YP_007209177.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
gi|291484714|dbj|BAI85789.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. natto BEST195]
gi|320018034|gb|ADV93020.1| 30S ribosomal protein S1 [Bacillus subtilis BSn5]
gi|349595120|gb|AEP91307.1| conserved hypothetical protein [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|384932153|gb|AFI28831.1| 30S ribosomal protein S1 [Bacillus sp. JS]
gi|430022989|gb|AGA23595.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
BSP1]
Length = 382
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|395237266|ref|ZP_10415353.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|423350857|ref|ZP_17328509.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|394487499|emb|CCI83441.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
gi|404387158|gb|EJZ82283.1| 30S ribosomal protein S1 [Turicella otitidis ATCC 51513]
Length = 481
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 83/248 (33%), Positives = 137/248 (55%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I KH
Sbjct: 18 EDFLAAVDETIKY-FND--GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ V L +E +++ + + D L+LS + QYE AW +L+ D V G V+
Sbjct: 72 VDPDEVVELGDEVDALVLTKEDKDGRLILSKKRAQYERAWGDIERLKENDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + E +G +L K +E+D+ ++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGAELEAKIIELDKHRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 NVGDEVTV 258
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGAELEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVNVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+G+F+ + GI GL+H+S+++ V ++ G+ L V
Sbjct: 298 KVTKLVPFGSFVRVDEGIEGLVHISELAQRHVDVPDQIVTVGEELMV 344
>gi|357590914|ref|ZP_09129580.1| 30S ribosomal protein S1 [Corynebacterium nuruki S6-4]
Length = 487
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++K Y FN G V+GTV D+ L+DI K+ +P++E I KH
Sbjct: 18 EDFLAAVDKTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ V + +E +++ + + D L+LS + QYE AW L+ +D V G V+
Sbjct: 72 VDPDEVVEVGDEIDALVLTKEDKDGRLILSKKRAQYERAWGTIEDLKEKDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D++++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQELEAKIIELDKQRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
++Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 ETQSAVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 SVGDEVTV 258
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLSLRM----IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q + E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEETQSAVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|296332972|ref|ZP_06875429.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305674924|ref|YP_003866596.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443634904|ref|ZP_21119076.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|296149823|gb|EFG90715.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. spizizenii ATCC
6633]
gi|305413168|gb|ADM38287.1| RNA degradation presenting factor [Bacillus subtilis subsp.
spizizenii str. W23]
gi|443345329|gb|ELS59394.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 382
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|225575700|ref|ZP_03784310.1| hypothetical protein RUMHYD_03793 [Blautia hydrogenotrophica DSM
10507]
gi|225037080|gb|EEG47326.1| S1 RNA binding domain protein [Blautia hydrogenotrophica DSM 10507]
Length = 301
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 139/250 (55%), Gaps = 20/250 (8%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T++++ LE E G + GTV ++ +D+ + + ++ HV+
Sbjct: 4 TMKDYEKELETSFQEIEEGEILTGTVIGITDKEVTLDLKYYTEGVIHVEDFSREPGFHVK 63
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DVVVKGKVVG 197
+ + G + +++ +++ + +++LS LAWE+ L+ E DVV+KG V
Sbjct: 64 DE-VHTGDEVSAMVMSKDDGNGNILLSKVEADDVLAWEKLNTLKEEQTVLDVVIKGVV-- 120
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNR--- 252
K GVVA VEG+RGF+P S++S EE L K + ++ EVD+E+ RL+LS R
Sbjct: 121 --KSGVVAYVEGVRGFIPASKLSLSYVDNLEEYLNKPIQVRVFEVDKEKKRLILSAREIL 178
Query: 253 KAMADSQ-----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIAT 306
K AD + + + +G V G V+SL+PYGAFID+G G++GL+H+SQIS R+ +
Sbjct: 179 KEKADEERKAKISNVEVGLVTEGIVESLQPYGAFIDLGNGLSGLVHISQISEKRIKSCSQ 238
Query: 307 VLQPGDTLKV 316
VL GD +KV
Sbjct: 239 VLAVGDKVKV 248
>gi|339498164|ref|ZP_08659140.1| SSU ribosomal protein S1P [Leuconostoc pseudomesenteroides KCTC
3652]
gi|399515907|ref|ZP_10757540.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
gi|398649341|emb|CCJ65567.1| SSU ribosomal protein S1p [Leuconostoc pseudomesenteroides 4882]
Length = 397
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 139/256 (54%), Gaps = 22/256 (8%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHK- 136
+S T E +ALE D ++G V G V DN A++ + +P +E +
Sbjct: 1 MSETNNELLAALESAD-QIKVGDVVTGEVLAIDNDNQAVIGLHTGEEGVVPAREYSDDRN 59
Query: 137 IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
I +E + G E V+I +D + +LS + ++ AWE + + V
Sbjct: 60 INLADELKV--GDSVEAVVISNVTSDKEGVAYLLSKKRLEARKAWENLSFAEGD--TVDA 115
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSN 251
KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D ++RL+LS
Sbjct: 116 KVINAVRGGLIVDVNGVRGFVPASMVADRFVSDLNQFKNKDIKAQVIEIDASKARLILS- 174
Query: 252 RKA---------MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
RKA +A++ A+L +G VV G V L +GAF+D+GG++GL+HVS+ISHDRV
Sbjct: 175 RKAVAAQERAAQLAEAFAKLTVGEVVEGKVARLTDFGAFVDLGGVDGLVHVSEISHDRVK 234
Query: 303 DIATVLQPGDTLKVCL 318
+ A VL G+ + V +
Sbjct: 235 NPADVLTKGEVVNVKI 250
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/167 (34%), Positives = 91/167 (54%), Gaps = 18/167 (10%)
Query: 165 LVLSLRMIQYELAWERCRQLQSEDV------VVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
L+LS + + A ER QL VV+GKV G ++ G+ G V S+
Sbjct: 171 LILSRKAVA---AQERAAQLAEAFAKLTVGEVVEGKVARLTDFGAFVDLGGVDGLVHVSE 227
Query: 219 ISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
IS K+ A+ L G+ + +K + +D E+ R+ LS + ++ G+V+ G
Sbjct: 228 ISHDRVKNPADVLTKGEVVNVKILALDSEKGRISLSIKATQPGPWDKVAEEAPAGTVLEG 287
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TV+ +K +GAF++I GI GL+HVSQISH R+ + + VL+ GD +KV
Sbjct: 288 TVKRVKDFGAFVEIFPGIEGLVHVSQISHKRIENPSDVLKSGDKVKV 334
>gi|296119662|ref|ZP_06838220.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
gi|295967545|gb|EFG80812.1| ribosomal protein S1 [Corynebacterium ammoniagenes DSM 20306]
Length = 489
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +LQ+++ V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ G+ + V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEEVMV 344
>gi|336178098|ref|YP_004583473.1| RNA binding S1 domain-containing protein [Frankia symbiont of
Datisca glomerata]
gi|334859078|gb|AEH09552.1| RNA binding S1 domain protein [Frankia symbiont of Datisca
glomerata]
Length = 484
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 137/248 (55%), Gaps = 18/248 (7%)
Query: 82 TLEEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIK 138
+ E+F +A++K FN G V GT+ D L+DI K+ +P++E I H +
Sbjct: 22 SAEDFLAAVDKTIKFFND--GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVD 79
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+
Sbjct: 80 PHEVVTV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKEEDGVVNGTVIEV 137
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 138 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 196
Query: 257 DSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 197 QTQSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 256
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 257 EVGQEVTV 264
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 130 VNGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 184
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 185 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 243
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD E+ R+ LS + D Q IG VV G
Sbjct: 244 LSWKHIDHPSEVVEVGQEVTVEVLDVDLERERVSLSLKATQEDPWRQFARTHAIGQVVPG 303
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 304 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 350
>gi|312139898|ref|YP_004007234.1| 30S ribosomal protein s1 rpsa [Rhodococcus equi 103S]
gi|311889237|emb|CBH48551.1| 30S ribosomal protein S1 RpsA [Rhodococcus equi 103S]
Length = 490
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 308 LQPGDTLKV 316
++ G+ + V
Sbjct: 252 VEVGNEVTV 260
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGNEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGD 342
>gi|16079345|ref|NP_390169.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221310206|ref|ZP_03592053.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
168]
gi|221314529|ref|ZP_03596334.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
NCIB 3610]
gi|221319451|ref|ZP_03600745.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
JH642]
gi|221323727|ref|ZP_03605021.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SMY]
gi|402776548|ref|YP_006630492.1| RNA degradation presenting factor [Bacillus subtilis QB928]
gi|418032549|ref|ZP_12671032.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|452915853|ref|ZP_21964479.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
gi|585942|sp|P38494.1|RS1H_BACSU RecName: Full=30S ribosomal protein S1 homolog
gi|533106|gb|AAA85150.1| unknown [Bacillus subtilis subsp. subtilis str. 168]
gi|1146215|gb|AAC83962.1| similar to Escherichia coli S1 ribosomal protein; putative
[Bacillus subtilis subsp. subtilis str. 168]
gi|2634706|emb|CAB14204.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus subtilis subsp. subtilis str. 168]
gi|351471412|gb|EHA31533.1| 30S ribosomal protein S1 [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|402481729|gb|AFQ58238.1| RNA degradation presenting factor (ribosomal protein S1 like
protein) [Bacillus subtilis QB928]
gi|407959531|dbj|BAM52771.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7613]
gi|407965107|dbj|BAM58346.1| 30S ribosomal protein S1 [Bacillus subtilis BEST7003]
gi|452116201|gb|EME06597.1| hypothetical protein BS732_2804 [Bacillus subtilis MB73/2]
Length = 382
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|398311236|ref|ZP_10514710.1| 30S ribosomal protein S1 [Bacillus mojavensis RO-H-1]
Length = 382
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQDLLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQDLLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKETLPGPWSQVGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|407795535|ref|ZP_11142493.1| 30S ribosomal protein S1 [Salimicrobium sp. MJ3]
gi|407019876|gb|EKE32590.1| 30S ribosomal protein S1 [Salimicrobium sp. MJ3]
Length = 380
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 124/233 (53%), Gaps = 16/233 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
+FN G V G V +++ LVD+ K +P E H+E A ++
Sbjct: 13 EFNE--GDLVTGKVVKVEDKQVLVDVGYKVEGIVPISELSSL---HIETASDAVKEGDDI 67
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+ + DD +VLS R + + AWE + + +V KGG+V ++ GLRGF
Sbjct: 68 TLKVKKVEDDEIVLSKRAVDADKAWEDLETKYENEEIFNAEVQDVVKGGLVVDI-GLRGF 126
Query: 214 VPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S + + E+ GK+L LK VE+D EQ+R++LS+R + + + L
Sbjct: 127 IPASLVETYYVEDFEDYKGKELSLKVVELDREQNRVILSHRAVVEGEEKEQKQNVLQSLE 186
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GGI+GL+H+SQ+SH+ V+ + V++ G + V
Sbjct: 187 SGQVVEGTVQRLTDFGAFVNLGGIDGLVHISQLSHEHVSKASDVVEEGQKISV 239
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 120/234 (51%), Gaps = 25/234 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FN+E+ VKG G +VDI + ++P A + + +VE+ G +
Sbjct: 105 FNAEVQDVVKG--------GLVVDIGLR--GFIP---ASLVETYYVEDFEDYKGKELSLK 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQS + VV+G V G + G+
Sbjct: 152 VVELDREQNRVILSHRAVVEGEEKEQKQNVLQSLESGQVVEGTVQRLTDFGAFVNLGGID 211
Query: 212 GFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI--- 264
G V SQ+S + S A +++ G+ + +K + VD + R+ LS ++ +G
Sbjct: 212 GLVHISQLSHEHVSKASDVVEEGQKISVKVLSVDRDNERISLSLKETQPGPWENIGDKVS 271
Query: 265 -GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF+++ G+ GL+H+SQIS +A+ VL+ G+T+ V
Sbjct: 272 QGDVLEGTVQRLVNFGAFVEVLPGVEGLVHISQISTRHIANPQEVLEEGETVNV 325
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 83/169 (49%), Gaps = 12/169 (7%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV--PGLKEEFVI 155
E G V+GTV + GA V++ +Q + +HV +A V G K +
Sbjct: 186 ESGQVVEGTVQRLTDFGAFVNLGGIDGLVHISQLSH----EHVSKASDVVEEGQKISVKV 241
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG-ANKGGVVAEVEGLRGFV 214
+ + ++ + LSL+ Q WE S+ V++G V N G V + G+ G V
Sbjct: 242 LSVDRDNERISLSLKETQ-PGPWENIGDKVSQGDVLEGTVQRLVNFGAFVEVLPGVEGLV 300
Query: 215 PFSQISSKSTA--EELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
SQIS++ A +E+L G+ + +K ++VDE Q RL LS ++ D+Q
Sbjct: 301 HISQISTRHIANPQEVLEEGETVNVKVLDVDENQKRLSLSIKELDEDNQ 349
>gi|257066512|ref|YP_003152768.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
gi|256798392|gb|ACV29047.1| hydroxymethylbutenyl pyrophosphate reductase [Anaerococcus prevotii
DSM 20548]
Length = 686
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 132/245 (53%), Gaps = 13/245 (5%)
Query: 81 FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
FT EEF ++LE K + E+ VKGTV + VDI ++ + E +
Sbjct: 277 FTKEEFMNSLEDSLKKIYPKEI---VKGTVIDVKDDEVFVDIQFRADGIIKLDEMTEEEA 333
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
K + + V G + + +I ++ + ++ LS R ++ W+ + D +V G V G
Sbjct: 334 KDPKNSFNV-GDEIDVFVIKLDDGEGNVSLSTRRVEGMKVWKDLAEKAENDELVHGVVSG 392
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
NKGG+ VEG+ GFVP SQI++ ++ +G++ LK + +DE ++RLVLS ++ +
Sbjct: 393 FNKGGLTVNVEGINGFVPASQIATYFVKNFKKFVGEEWDLKIISIDERKNRLVLSRKEVV 452
Query: 256 ADS----QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
D +L G VV G V L +GAF+++ G++GLLHVS I+ RV + VL G
Sbjct: 453 EDELDGLWEELEEGQVVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPSDVLNVG 512
Query: 312 DTLKV 316
D ++V
Sbjct: 513 DEIEV 517
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 19/217 (8%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N+G L + ++P + + +K+ ++ G + + II +E + LVLS +
Sbjct: 394 NKGGLTVNVEGINGFVPASQIATYFVKNFKK---FVGEEWDLKIISIDERKNRLVLSRKE 450
Query: 171 MIQYELA--WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL 228
+++ EL WE + Q VV GKV G EV GL G + S I+
Sbjct: 451 VVEDELDGLWEELEEGQ----VVTGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPS 506
Query: 229 ----LGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGA 280
+G ++ +K +++++E++R+ L + K Q +G VV G V +L +GA
Sbjct: 507 DVLNVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFVNQHEVGDVVTGKVVNLLDFGA 566
Query: 281 FIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+++ G+ GL+HVS+IS + V + L GD ++V
Sbjct: 567 FVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEV 603
>gi|239827521|ref|YP_002950145.1| 30S ribosomal protein S1 [Geobacillus sp. WCH70]
gi|239807814|gb|ACS24879.1| RNA binding S1 domain protein [Geobacillus sp. WCH70]
Length = 387
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 135/236 (57%), Gaps = 23/236 (9%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEA---GIVPGLKEEFV 154
+G V+G V +++ LVDI +K S +P E I+ +A G K + V
Sbjct: 14 VGDIVRGKVVKLEDKQVLVDIEGSKQSGIIPISELSSLHIEKTSDAVSVGDEVTAKVKKV 73
Query: 155 IIGENEADDSLVLSLRMIQYELAWERC-RQLQSE---DVVVKGKVVGANKGGVVAEVEGL 210
GENE D L+LS + + + AWE R+ S DVVVK V KGG+VA+V G+
Sbjct: 74 EEGENEEDGLLILSKKAVDADRAWEELERKFASGETFDVVVKDIV----KGGLVADV-GV 128
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------A 260
RGF+P S + + + GK L +K VE++ E++R++LS+R + + Q +
Sbjct: 129 RGFIPASLVEPHYVEDFSDYKGKTLAVKVVELNREKNRIILSHRAVVEEEQERKHKEALS 188
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+L G V+ GTV+ + +G F+D+GG +GL+H+SQ+SH RVA + V++ G+T+KV
Sbjct: 189 RLEPGQVLEGTVRRVTDFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGETVKV 244
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQS 245
V++G V GV +V G G V SQ+S A E++ G+ + +K + VDEE
Sbjct: 195 VLEGTVRRVTDFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGETVKVKVLAVDEENG 254
Query: 246 RLVLSNRKAMADSQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS ++AM ++ G +V G V+ L P+GAF++I G+ GL+H+SQIS+ R
Sbjct: 255 RVSLSIKEAMPGPWEGIAEKVAPGDIVTGKVKRLVPFGAFVEIFPGVEGLVHISQISNKR 314
Query: 301 VADIATVLQPGDTLK 315
+ VL+ G+ +K
Sbjct: 315 IGTPHEVLKEGEEVK 329
>gi|7579906|gb|AAF64246.1| 30S ribosomal protein S1 [Corynebacterium stationis]
Length = 489
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +LQ+++ V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 131 VVKGGLIIDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLEPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ G+ + V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGEDVMV 344
>gi|358446728|ref|ZP_09157270.1| 30S ribosomal protein S1 [Corynebacterium casei UCMA 3821]
gi|356607311|emb|CCE55615.1| 30S ribosomal protein S1 [Corynebacterium casei UCMA 3821]
Length = 489
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 142/249 (57%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +LQ+++ V G V+
Sbjct: 73 DPDEVVEV--GDQVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|386714595|ref|YP_006180918.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
gi|384074151|emb|CCG45644.1| 30S ribosomal protein S1 [Halobacillus halophilus DSM 2266]
Length = 380
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 14/227 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V + + LVD+ K +P E HVE+A +E + +
Sbjct: 17 GDIVTGKVVKIEEKQVLVDVGYKVEGIVPISELSS---LHVEKASDAVSEGDELTLQVKK 73
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
DD +VLS R + + AW+ + + +V KGG+V ++ GLRGF+P S +
Sbjct: 74 VEDDEIVLSKRAVDADKAWQDLEDKYESGEIFEAEVKDVVKGGLVVDI-GLRGFIPASLV 132
Query: 220 SSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVI 269
+ E G++L LK VE+D EQ+R++LS+R + + ++ L G V+
Sbjct: 133 ETYYVEDFENYKGRNLSLKVVELDREQNRVILSHRAVVEEEESAKKQEVLHSLEDGQVIE 192
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+++GGI+GL+H+SQ+SH V + V++ G T+KV
Sbjct: 193 GTVQRLTDFGAFVNLGGIDGLVHISQLSHQHVEKASDVVEEGQTVKV 239
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 25/234 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGLR--GFIP---ASLVETYYVEDFENYKGRNLSLK 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS-ED-VVVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E + ++ L S ED V++G V G + G+
Sbjct: 152 VVELDREQNRVILSHRAVVEEEESAKKQEVLHSLEDGQVIEGTVQRLTDFGAFVNLGGID 211
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLG 263
G V SQ+S + A +++ G+ + +K + VD + R+ LS + D Q ++
Sbjct: 212 GLVHISQLSHQHVEKASDVVEEGQTVKVKVLSVDRDNERISLSLKATQPGPWHDIQEKVK 271
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTV+ L +GAF+++ G+ GL+H+SQIS+ + VL+ G ++V
Sbjct: 272 QGEVLEGTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGTPGEVLEEGQQVQV 325
>gi|410459394|ref|ZP_11313145.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
gi|409930370|gb|EKN67371.1| 30S ribosomal protein S1 [Bacillus azotoformans LMG 9581]
Length = 377
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 130/243 (53%), Gaps = 16/243 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE + LE F +G V G V +++ LVDI K +P E H+E+A
Sbjct: 3 EEMNQNLEVKSFA--IGDTVGGKVTKVEDKHVLVDIGFKVEGIVPISELSS---LHIEKA 57
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
G V + ++ + ++ ++LS + + E AW+ V + +V KGG+
Sbjct: 58 GDVVKVNDDLTLKVIKVEEEEIILSKKAVDAENAWDELVNKFETGEVFEAEVKDVVKGGL 117
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD---S 258
V ++ G+RGF+P S + + E G+++ LK VE+D E++R++LS+R + D S
Sbjct: 118 VVDI-GVRGFIPASLVERHFVEDFSEYKGRNISLKVVEIDREKNRVILSHRAVLDDEIAS 176
Query: 259 QAQ-----LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
Q Q L +G V+ GTVQ L +G F+DIGGI+GL+H+SQ++H V A V+ G
Sbjct: 177 QKQQTIDALKVGQVLEGTVQRLADFGVFVDIGGIDGLVHISQLAHQHVDKPADVVAEGQK 236
Query: 314 LKV 316
+KV
Sbjct: 237 VKV 239
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/237 (25%), Positives = 117/237 (49%), Gaps = 29/237 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVERHFVEDFSEYKGRNISLK 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R ++ E+A ++ + + + V V++G V GV ++ G+
Sbjct: 152 VVEIDREKNRVILSHRAVLDDEIASQKQQTIDALKVGQVLEGTVQRLADFGVFVDIGGID 211
Query: 212 GFVPFSQISSKST-------AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--AQL 262
G V SQ++ + AE G+ + +K + +D++ R+ LS ++ + +
Sbjct: 212 GLVHISQLAHQHVDKPADVVAE---GQKVKVKVLSIDKDNERISLSIKETLPGPWDLIEY 268
Query: 263 GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V GTV+ L +GAF+++ + GL+H+SQIS+ +A VL+ G+ +KV +
Sbjct: 269 KRGDEVSGTVKRLVNFGAFVEVAPNVEGLVHISQISNRHIATPHEVLKEGEKVKVKI 325
>gi|163848026|ref|YP_001636070.1| RNA-binding S1 domain-containing protein [Chloroflexus aurantiacus
J-10-fl]
gi|222525913|ref|YP_002570384.1| RNA binding S1 domain-containing protein [Chloroflexus sp.
Y-400-fl]
gi|163669315|gb|ABY35681.1| RNA binding S1 domain protein [Chloroflexus aurantiacus J-10-fl]
gi|222449792|gb|ACM54058.1| RNA binding S1 domain protein [Chloroflexus sp. Y-400-fl]
Length = 399
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 127/240 (52%), Gaps = 19/240 (7%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G V G + + LVDI AK+ +P++E + + + A + G +
Sbjct: 45 NLKHGDTVDGRIMQINRDEILVDIGAKAEGVIPSRE--MQTLSEEDRAALKVGDTILVFV 102
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ + + +LS+ + E +W ++ ++ +V NKGG++ +++G+RGFVP
Sbjct: 103 VQSEDKEGRAILSIDKARQEKSWRALQECYERGDIIYARVKNYNKGGLLVDLDGVRGFVP 162
Query: 216 FSQISSKSTAEE---------LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ------- 259
SQ+SS S E L+ +LPLK +E++ ++RL+LS R+A+ +++
Sbjct: 163 ASQVSSISRVSETQKQSEMARLVNVELPLKVIEINRNRNRLILSERQALVETRESKKDEL 222
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L G V G V S+ +G F+DIGG +GL+H+S+IS RV VL+ GD +KV +
Sbjct: 223 LTSLREGDVRDGVVSSVCDFGVFVDIGGADGLVHLSEISWSRVKHPGEVLKVGDKVKVAI 282
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 64/123 (52%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV ++ G G V S+IS K E L +G + + + +D E+ R+ LS ++ ++
Sbjct: 243 GVFVDIGGADGLVHLSEISWSRVKHPGEVLKVGDKVKVAILNIDHERKRIALSIKRTQSE 302
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
++ +G +V GT+ L +GAF I G+ GL+H+S++ +R+ VL G
Sbjct: 303 PWTRVAERYQLGQIVEGTITQLASFGAFARIEDGVEGLIHISEMGDERIQHPREVLSEGQ 362
Query: 313 TLK 315
++
Sbjct: 363 VVQ 365
>gi|227501804|ref|ZP_03931853.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
gi|306835982|ref|ZP_07468974.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
gi|227077829|gb|EEI15792.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49725]
gi|304568148|gb|EFM43721.1| 30S ribosomal protein S1 [Corynebacterium accolens ATCC 49726]
Length = 487
Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V GTV D+ L+DI K+ +P++E I
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVGGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E + G + + +++ + + + L+LS + QYE AW +LQ+++ V G V+
Sbjct: 73 NPDEV-VEVGDEVDALVLTKEDKEGRLILSKKRAQYERAWGAIEELQAKEEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAYLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 TVGDEVTV 258
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGQELEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAYLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|326332716|ref|ZP_08198978.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
gi|325949497|gb|EGD41575.1| ribosomal protein S1 [Nocardioidaceae bacterium Broad-1]
Length = 493
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++ KY FN G V G + D L+DI K+ +P++E I KH
Sbjct: 26 EDFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 79
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ + +V G K E +++ + + + L+LS + QYE AW Q++ ED VV+G V+
Sbjct: 80 VDPSEVVEVGDKVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVEGAVIEV 139
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 140 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGQTLEAKIIELDKNRNNVVLSRRAWLE 198
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 199 QTQSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 258
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 259 TVGDEVTV 266
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 106/229 (46%), Gaps = 19/229 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G V G ++DI + +LP A + +++ V + G E II ++
Sbjct: 132 VEGAVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGQTLEAKIIELDKNR 186
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 187 NNVVLSRRAWLEQTQSEVRHGFLTQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 245
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 246 LSWKHIDHPSEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHQIGQIVPG 305
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L P+G+F+ + GI GL+H+S+++ V V+Q D + V +
Sbjct: 306 KVTKLVPFGSFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKI 354
>gi|347532511|ref|YP_004839274.1| RNA binding S1 domain containing protein [Roseburia hominis A2-183]
gi|345502659|gb|AEN97342.1| RNA binding S1 domain protein [Roseburia hominis A2-183]
Length = 300
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G + GTV + G +D+ + ++ +E + EA + G E +I +
Sbjct: 21 GDILTGTVIDVNEEGVTLDLKYYAPGFISAEEMSSDPDFSLAEA-VHVGDTIEATVIRVD 79
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ +++LS R E AWE+ +++ E V ++ + K GVVA +EG+R F+P SQI
Sbjct: 80 DGAGNILLSRREANEEQAWEKLKEMMEEGTTVTVRIKESVKAGVVAYLEGIRAFIPASQI 139
Query: 220 SSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVVI 269
+S E +GK++P++ + VDEE+ +LVLS + +++ + + G+V+
Sbjct: 140 TSAYVEDTESWVGKEIPVRVITVDEEREKLVLSGKAVALEAEAEERNHKISMIVPGTVLE 199
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
GTV+SL PYGAFID+G G++GL+H+SQI R+ + VL+ G+ +K
Sbjct: 200 GTVESLMPYGAFIDLGNGLSGLVHISQICERRIGKPSEVLKVGEKVK 246
>gi|15827720|ref|NP_301983.1| 30S ribosomal protein S1 [Mycobacterium leprae TN]
gi|221230197|ref|YP_002503613.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
gi|13432211|sp|P46836.2|RS1_MYCLE RecName: Full=30S ribosomal protein S1
gi|13093271|emb|CAC31763.1| 30S ribosomal protein S1 [Mycobacterium leprae]
gi|219933304|emb|CAR71477.1| 30S ribosomal protein S1 [Mycobacterium leprae Br4923]
Length = 481
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
G+ + V
Sbjct: 254 VGNEVTV 260
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGIVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|336320735|ref|YP_004600703.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336104316|gb|AEI12135.1| RNA binding S1 domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 492
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 141/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAIDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGEVVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLGPYVGKEIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLGPYVGKEIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 292 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFV 349
>gi|288920743|ref|ZP_06415044.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
gi|288347871|gb|EFC82147.1| RNA binding S1 domain protein [Frankia sp. EUN1f]
Length = 492
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 137/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G + E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVSV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|271964470|ref|YP_003338666.1| 30S ribosomal protein S1 [Streptosporangium roseum DSM 43021]
gi|270507645|gb|ACZ85923.1| Ribosomal protein S1-like protein [Streptosporangium roseum DSM
43021]
Length = 500
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 141/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EDFLAAIDLTIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 77 VDPADVVEVGEHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGIVTGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 196 QTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 255
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 256 EVGQEVTV 263
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 33/236 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V KG V G ++ G+
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD 235
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 236 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 295
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V +
Sbjct: 296 IGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKI 351
>gi|381162416|ref|ZP_09871646.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
gi|418461759|ref|ZP_13032823.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|359738168|gb|EHK87068.1| 30S ribosomal protein S1 [Saccharomonospora azurea SZMC 14600]
gi|379254321|gb|EHY88247.1| ribosomal protein S1 [Saccharomonospora azurea NA-128]
Length = 493
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 143/250 (57%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 23 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 76
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 77 HDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 136
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 137 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 195
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 196 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 255
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 256 VVEVGQEVTV 265
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGSEVMV 351
>gi|452959839|gb|EME65170.1| 30S ribosomal protein S1 [Amycolatopsis decaplanina DSM 44594]
Length = 499
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 27 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 80
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 81 VDPAEVVTVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEV 140
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 141 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 199
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 259
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 260 EVGQEVTV 267
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQ-PGDTL 314
V L P+GAF+ + GI GL+H+S+++ V V+Q GD +
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVM 352
>gi|312198706|ref|YP_004018767.1| RNA binding S1 domain-containing protein [Frankia sp. EuI1c]
gi|311230042|gb|ADP82897.1| RNA binding S1 domain protein [Frankia sp. EuI1c]
Length = 493
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V GT+ D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVAV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLSQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLSQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|257056579|ref|YP_003134411.1| 30S ribosomal protein S1 [Saccharomonospora viridis DSM 43017]
gi|256586451|gb|ACU97584.1| SSU ribosomal protein S1P [Saccharomonospora viridis DSM 43017]
Length = 495
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 143/250 (57%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 24 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 77
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 78 HDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 137
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 138 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 196
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 197 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 256
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 257 VVEVGQEVTV 266
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 132 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 186
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 187 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 245
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 246 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 305
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 306 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMV 352
>gi|302528116|ref|ZP_07280458.1| ribosomal protein S1 [Streptomyces sp. AA4]
gi|302437011|gb|EFL08827.1| ribosomal protein S1 [Streptomyces sp. AA4]
Length = 497
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 27 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 80
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 81 VDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEV 140
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 141 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 199
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 259
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 260 EVGQEVTV 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQ-PGDTL 314
V L P+GAF+ + GI GL+H+S+++ V V+Q GD +
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVM 352
>gi|384566732|ref|ZP_10013836.1| ribosomal protein S1 [Saccharomonospora glauca K62]
gi|384522586|gb|EIE99781.1| ribosomal protein S1 [Saccharomonospora glauca K62]
Length = 491
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 143/250 (57%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 23 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 76
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 77 HDVDPAEVVAVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 136
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 137 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 195
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 196 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 255
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 256 VVEVGQEVTV 265
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMV 351
>gi|334136644|ref|ZP_08510104.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
gi|333605843|gb|EGL17197.1| putative ribosomal protein S1 [Paenibacillus sp. HGF7]
Length = 418
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 129/228 (56%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKG + + A+VDI K +P +E +I++ ++A + G + E I+ +
Sbjct: 30 GDIVKGKIIKVEQDQAIVDIGYKYDGTIPLRELSSVQIENADQA-VQEGQEIELKIVTID 88
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R + E AWE +Q E V+++ V KGG+V +V G+RGFVP S +
Sbjct: 89 DNKEKLVLSKRSVDSEKAWETLQQKLDEKVIIEAVVAEVVKGGLVVDV-GVRGFVPASMV 147
Query: 220 SSKSTAEEL---LGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVV 268
+S E+ G+ L L+ E+D E+++++LS + + D +++ +G V
Sbjct: 148 E-RSFVEDFSDYKGRTLRLRVKEIDREKNKVILSQKDVLDEEYEAQKKDIISKIEVGKVY 206
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+DIGGI+GL+H+S+++ V + +++ GD + V
Sbjct: 207 EGTVQRLTQFGAFVDIGGIDGLVHISEMAWHHVEHPSEIVKEGDKVSV 254
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQS 245
V +G V + G ++ G+ G V S+++ E++ G + ++ ++VD E+
Sbjct: 205 VYEGTVQRLTQFGAFVDIGGIDGLVHISEMAWHHVEHPSEIVKEGDKVSVQVLKVDPEKD 264
Query: 246 RLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + ++ G ++ GTV+ L +GAF++I G+ GL+H+SQI+H
Sbjct: 265 KVSLSLKATQEGPWEKAEKTFTTGEIITGTVKRLAGFGAFVEIAPGVEGLVHISQIAHRH 324
Query: 301 VADIATVLQPGDTLKV 316
+A VL+ G +KV
Sbjct: 325 IATPQEVLKEGQEVKV 340
>gi|297626694|ref|YP_003688457.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922459|emb|CBL57032.1| 30S ribosomal protein S1 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length = 484
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 137/246 (55%), Gaps = 23/246 (9%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E F +A++ KY FN G VKGTV D L+DI K+ +P++E I H +
Sbjct: 18 SAEAFEAAVDSTIKY-FND--GDIVKGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E ++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 DPFEVVSV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQELEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADI 304
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 192 EQTQSETRHNFLQQLQKGQIRKGIVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 251
Query: 305 ATVLQP 310
V QP
Sbjct: 252 VEVGQP 257
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 110/230 (47%), Gaps = 21/230 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E +QLQ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSETRHNFLQQLQKGQIR-KGIVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVI 269
+S K +G+ + ++ ++VD E+ R+ LS KA + QL IG +V
Sbjct: 240 LSWKHIDHPSEVVEVGQPVTVEVLDVDMERERVSLS-LKATQEDPWQLFARTHQIGEIVP 298
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V L P+GAF+ + GI GL+HVS+++ V V+ GD + V +
Sbjct: 299 GKVTKLVPFGAFVRVEEGIEGLVHVSELAERHVEIPEQVVSVGDEVLVKI 348
>gi|311742677|ref|ZP_07716486.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
gi|311314305|gb|EFQ84213.1| 30S ribosomal protein S1 [Aeromicrobium marinum DSM 15272]
Length = 489
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++K Y FN G V GT+ D L+DI K+ +P++E I H I
Sbjct: 21 SAEDFLAAIDKTIKY-FND--GDIVDGTIVKIDRDEVLLDIGYKTEGVIPSRELSIKHDI 77
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G E +++ + + + L+LS + QYE AW ++++ED VV+G V+
Sbjct: 78 DPNEVVAL--GDTVEALVLQKEDKEGRLILSKKRAQYERAWGDIEKIKAEDGVVEGTVIE 135
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R +
Sbjct: 136 VVKGGLIMDI-GLRGFLPASLVEMRRVRDLDPYIGQKIEAKIIELDKNRNNVVLSRRAWL 194
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ +L G V G + S+ +GAF+D+GG++GL+HVS++S + V
Sbjct: 195 EQTQSAVRQNFLTELKKGQVRKGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEV 254
Query: 308 LQPGDTLKV 316
+Q GD + V
Sbjct: 255 VQVGDEVTV 263
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 110/236 (46%), Gaps = 33/236 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 129 VEGTVIEVVKGGLIMDIGLR--GFLP---ASLVEMRRVRDLDPYIGQKIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQS-----------EDVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QS + V KG + G ++ G+
Sbjct: 184 NNVVLSRR------AW--LEQTQSAVRQNFLTELKKGQVRKGVISSIVNFGAFVDLGGVD 235
Query: 212 GFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 236 GLVHVSELSWKHIDHPNEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHQ 295
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
IG +V G V L P+GAF+ + GI GL+H+S+++ V V+Q GD++ V +
Sbjct: 296 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQIGDSVMVKI 351
>gi|358463314|ref|ZP_09173384.1| RNA binding S1 domain protein [Frankia sp. CN3]
gi|357070427|gb|EHI80131.1| RNA binding S1 domain protein [Frankia sp. CN3]
Length = 492
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V GT+ D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVDGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVSV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLSQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLSQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|256832461|ref|YP_003161188.1| RNA binding S1 domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256685992|gb|ACV08885.1| RNA binding S1 domain protein [Jonesia denitrificans DSM 20603]
Length = 488
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 141/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 15 TEEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 68
Query: 139 HVEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 69 HDVDPGEVVNVGDSVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVI 128
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R
Sbjct: 129 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAW 187
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 188 LEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 247
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 248 VVEVGQEVTV 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 110/234 (47%), Gaps = 41/234 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 286 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLPEQVVNVGD 339
>gi|451336997|ref|ZP_21907548.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
gi|449420339|gb|EMD25826.1| SSU ribosomal protein S1p [Amycolatopsis azurea DSM 43854]
Length = 499
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 27 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 80
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 81 VDPAEVVTVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEV 140
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 141 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 199
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 259
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 260 EVGQEVTV 267
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQ-PGDTL 314
V L P+GAF+ + GI GL+H+S+++ V V+Q GD +
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVM 352
>gi|389573087|ref|ZP_10163163.1| putative 30S ribosomal protein S1 like protein [Bacillus sp. M 2-6]
gi|388427244|gb|EIL85053.1| putative 30S ribosomal protein S1 like protein [Bacillus sp. M 2-6]
Length = 383
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K +P E HVE+A V +E +
Sbjct: 14 EVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSS---LHVEKASDVVKDGDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGS 266
S + + + + GK L L VE+D E++R++LS+R + Q +L +GS
Sbjct: 130 SLVEAHYVEDFTDYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLAVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAHVEKPSDVVEEGQEVKV 239
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G V
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHYVEDFTDYKGKTLSLV 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ V V+ GKV G ++ G+
Sbjct: 152 VVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLAVGSVIDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISS------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEE--GQEVKVKVLAVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQISH + VL+ G T+KV
Sbjct: 270 VKQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPQEVLEEGQTVKV 325
>gi|386773662|ref|ZP_10096040.1| 30S ribosomal protein S1 [Brachybacterium paraconglomeratum LC44]
Length = 494
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 136/236 (57%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V+GTV D+ L+DI K+ +P++E I H + +E + G +
Sbjct: 29 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDPADEVEV--GDE 83
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW Q++ ++ VV G+V+ KGG++ ++ GL
Sbjct: 84 IEALVLQKEDKEGRLILSKKRAQYERAWGSIEQIKEDEGVVTGRVIEVVKGGLIVDI-GL 142
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA-------- 260
RGF+P S + + + +G+++ K +E+D+ ++ +VLS R + ++Q+
Sbjct: 143 RGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQ 202
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G +KV
Sbjct: 203 TLQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQKVKV 258
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G V G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGRVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 178
Query: 163 DSLVLSLRMIQYEL-AWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R E + R LQ+ + V +G V G ++ G+ G V S++
Sbjct: 179 NNVVLSRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSEL 238
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVIG 270
S K +G+ + ++ ++VD ++ R+ LS KA + QL IG VV G
Sbjct: 239 SWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHAIGEVVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 329
>gi|341821259|emb|CCC57612.1| ribosomal protein S1 [Weissella thailandensis fsh4-2]
Length = 405
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 131/249 (52%), Gaps = 16/249 (6%)
Query: 84 EEFHSALEKYDFNSEL--GTKVKGTVFC-TDNRGALVDIT-AKSSAYLPTQEACIHKIKH 139
EE + L D +E+ G VKG V DNR +V I A +P +E +
Sbjct: 3 EENNELLAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDAD 62
Query: 140 VEE--AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
V + IG ++ S +LS R ++ AWE S D +V+ V
Sbjct: 63 VNDLVKVGDVLDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQ 122
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
A KGG+V +VEG+RGFVP S I ++ + + G+ + K +E++ SRL+LS R+ +
Sbjct: 123 AVKGGLVVDVEGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLILSRREVL 182
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+ ++ +L +G V+ G V + +GAFID+GG++GL+HVS+ISH+RV+ + V
Sbjct: 183 NEERSAALARIFDELSVGDVIEGKVARMTNFGAFIDLGGVDGLVHVSEISHERVSQPSDV 242
Query: 308 LQPGDTLKV 316
L G+ +KV
Sbjct: 243 LSVGEEVKV 251
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYE---LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
II N AD L+LS R + E A R S V++GKV G ++ G+
Sbjct: 164 IIEINAADSRLILSRREVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAFIDLGGVD 223
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLG- 263
G V S+IS + ++ +G+++ +K + +D E+ R+ LS + D+ A+
Sbjct: 224 GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKATQPGPWDTAAEKAP 283
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G+V+ GTV+ + +GAF+++ G+ GL+HVSQISH +A+ + VL GD ++V
Sbjct: 284 AGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLTAGDKVQV 337
>gi|403380791|ref|ZP_10922848.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JC66]
Length = 420
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 127/225 (56%), Gaps = 14/225 (6%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG + DN A VDI K +P +E I EA + G + E ++ ++
Sbjct: 47 VKGKIVKVDNEQAFVDIGYKYDGIIPLRELSAVSISEASEA-VEVGQELELKVVKIDDEK 105
Query: 163 DSLVLSLRMIQYELAWERCR-QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
+ L+LS R++ E AW+ + +L+S++ + + KV KGG+V +V GLRGFVP S +
Sbjct: 106 EKLILSKRLVDSEKAWDDLQAKLESQETI-EAKVADVVKGGLVIDV-GLRGFVPASMVER 163
Query: 222 KSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQAQLG---IGSVVIGT 271
+ + G+ L +K E+D E+++++LS + + A Q L IG + GT
Sbjct: 164 HFVEDFSDYKGRTLRMKVKELDREKNKVILSQKDVLDEEYNAKKQEILNSIEIGQEIEGT 223
Query: 272 VQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VQ L P+G F+DIGGI+GL+H+S+++ V + + +++ GD +KV
Sbjct: 224 VQRLTPFGVFVDIGGIDGLVHISEMAWHHVEEASELVKEGDKVKV 268
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 72/126 (57%), Gaps = 9/126 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV ++ G+ G V S+++ E EL+ G + ++ ++VD E R+ LS + A
Sbjct: 231 GVFVDIGGIDGLVHISEMAWHHVEEASELVKEGDKVKVQVLKVDPENERISLSMKAAQPG 290
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
QLG +G+VV GTV+ L +GAF++I G+ GL+H+SQISH + VL+ G
Sbjct: 291 PWEQLGDHIQVGAVVSGTVKRLVNFGAFVEIAPGVEGLVHISQISHRHIGTPHEVLEEGQ 350
Query: 313 TLKVCL 318
++V +
Sbjct: 351 EVQVKI 356
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 85/176 (48%), Gaps = 13/176 (7%)
Query: 83 LEEFHSALEKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
L+E ++A ++ NS E+G +++GTV G VDI + E H HVE
Sbjct: 199 LDEEYNAKKQEILNSIEIGQEIEGTVQRLTPFGVFVDIGG-IDGLVHISEMAWH---HVE 254
Query: 142 EAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG-A 198
EA + G K + ++ + ++ + LS++ Q WE+ VV G V
Sbjct: 255 EASELVKEGDKVKVQVLKVDPENERISLSMKAAQ-PGPWEQLGDHIQVGAVVSGTVKRLV 313
Query: 199 NKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLS 250
N G V G+ G V SQIS + T E+L G+++ +K ++++ ++ R+ LS
Sbjct: 314 NFGAFVEIAPGVEGLVHISQISHRHIGTPHEVLEEGQEVQVKILDLNPQEKRVSLS 369
>gi|300787975|ref|YP_003768266.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|384151397|ref|YP_005534213.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|399539858|ref|YP_006552520.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|299797489|gb|ADJ47864.1| small subunit ribosomal protein S1 [Amycolatopsis mediterranei U32]
gi|340529551|gb|AEK44756.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
gi|398320628|gb|AFO79575.1| 30S ribosomal protein S1 [Amycolatopsis mediterranei S699]
Length = 499
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 142/248 (57%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 27 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 80
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 81 VDPAEVVTVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEV 140
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 141 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 199
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 259
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 260 EVGQEVTV 267
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 110/226 (48%), Gaps = 20/226 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQ-PGDTL 314
V L P+GAF+ + GI GL+H+S+++ V V+Q GD +
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNGDVM 352
>gi|347753337|ref|YP_004860902.1| RNA binding S1 domain-containing protein [Bacillus coagulans 36D1]
gi|347585855|gb|AEP02122.1| RNA binding S1 domain protein [Bacillus coagulans 36D1]
Length = 378
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 125/229 (54%), Gaps = 15/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
+G KVK +V + + LV I +K +P E H+E A +E ++
Sbjct: 15 VGDKVKASVVKVEEKQVLVSIEGSKVDGIIPISELSN---LHIETASDAVKEGDELNLVV 71
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
+D+++LS R E AW+ ++ +++ +V KGG+V ++ G+RGFVP S
Sbjct: 72 TKVEEDAVILSKRKYDAEKAWDELKEKFENQEIIEAEVNEVVKGGLVVDL-GVRGFVPAS 130
Query: 218 QISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA--------DSQAQLGIGSV 267
+ + + GK LP VE+DE+++RL+LS+R + D L G V
Sbjct: 131 LVEDHFVEDFSDYKGKTLPFLIVELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQV 190
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GTVQ L +GAF+DIGGI+GL+H+SQ++H+RV + V+Q G+ +KV
Sbjct: 191 LEGTVQRLTSFGAFVDIGGIDGLVHISQLAHERVETPSDVVQEGEQVKV 239
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/220 (25%), Positives = 112/220 (50%), Gaps = 27/220 (12%)
Query: 114 GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173
G +VD+ + ++P A + + VE+ G F+I+ +E + L+LS R +
Sbjct: 116 GLVVDLGVR--GFVP---ASLVEDHFVEDFSDYKGKTLPFLIVELDEDKNRLILSHRAV- 169
Query: 174 YELAWERCRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--S 223
E+ ++ + +D+ V++G V G ++ G+ G V SQ++ +
Sbjct: 170 ----VEKEKEEKRQDILDHLEAGQVLEGTVQRLTSFGAFVDIGGIDGLVHISQLAHERVE 225
Query: 224 TAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKP 277
T +++ G+ + +K + VD + R+ LS + + + + G+V+ GTV+ L
Sbjct: 226 TPSDVVQEGEQVKVKVLSVDRDNGRISLSIKDTLPGPWEGIEQKAPKGTVLTGTVKRLVS 285
Query: 278 YGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAF+++ G+ GL+H+SQISH V+ VL+ G ++V
Sbjct: 286 FGAFVEVFPGVEGLVHISQISHKHVSTPHEVLREGQEVQV 325
>gi|269795322|ref|YP_003314777.1| 30S ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
gi|269097507|gb|ACZ21943.1| SSU ribosomal protein S1P [Sanguibacter keddieii DSM 10542]
Length = 496
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 146/263 (55%), Gaps = 24/263 (9%)
Query: 71 CRTAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSA 125
++AP ++ T E+F +A++ KY FN G V+GT+ D L+DI K+
Sbjct: 7 AKSAPQVAINDIGTAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEG 63
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQ 183
+P++E I KH + G V + + E +++ + + + L+LS + QYE AW +
Sbjct: 64 VIPSRELSI---KHDVDPGEVVKVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEK 120
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVD 241
++ ED VV G V+ KGG++ ++ GLRGF+P S + + + +GK++ K +E+D
Sbjct: 121 IKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELD 179
Query: 242 EEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHV 293
+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+HV
Sbjct: 180 KNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHV 239
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
S++S + V++ G + V
Sbjct: 240 SELSWKHIDHPGEVVEVGQEVTV 262
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 112/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 230
Query: 208 EGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 231 GGVDGLVHVSELSWKHIDHPGEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFA 290
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 291 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELPEQVVNVGDDVFV 348
>gi|256825135|ref|YP_003149095.1| 30S ribosomal protein S1 [Kytococcus sedentarius DSM 20547]
gi|256688528|gb|ACV06330.1| SSU ribosomal protein S1P [Kytococcus sedentarius DSM 20547]
Length = 492
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 136/244 (55%), Gaps = 14/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEE 142
EE +A+++ N + G V+GT+ D L+DI K+ +P++E I H I E
Sbjct: 17 EELLAAIDETMKNFDDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPDEV 76
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
+V G E +++ + + + L+LS + QYE AW Q++ +D VV G V+ KGG
Sbjct: 77 --VVVGDTVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDDGVVTGSVIEVVKGG 134
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q+
Sbjct: 135 LIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQTQS 193
Query: 261 --------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+L G V G V S+ +GAF+D+GG++GL+HVS++S + V++ G
Sbjct: 194 EVRTSFLKELQRGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPGEVVEVGQ 253
Query: 313 TLKV 316
+ V
Sbjct: 254 EVTV 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 21/213 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGSVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 177
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ ++LQ V G V G ++ G+ G V S+
Sbjct: 178 NNVVLSRRAWLEQTQSEVRTSFLKELQRGQVR-PGVVSSIVNFGAFVDLGGVDGLVHVSE 236
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVI 269
+S K +G+++ ++ ++VD ++ R+ LS KA + QL IG +V
Sbjct: 237 LSWKHIDHPGEVVEVGQEVTVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHAIGQIVP 295
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 296 GKVTKLVPFGAFVRVEDGIEGLVHISELAERHV 328
>gi|119717213|ref|YP_924178.1| 30S ribosomal protein S1 [Nocardioides sp. JS614]
gi|119537874|gb|ABL82491.1| SSU ribosomal protein S1P [Nocardioides sp. JS614]
Length = 490
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 137/246 (55%), Gaps = 20/246 (8%)
Query: 85 EFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
+F +A++ KY FN G V GT+ D L+DI K+ +P++E I H +
Sbjct: 26 DFLAAIDETIKY-FND--GDIVAGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPS 82
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G + E +++ + + + L+LS + QYE AW Q++ ED VV+G V+ K
Sbjct: 83 EVVAV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEQVKEEDGVVEGTVIEVVK 140
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R + +
Sbjct: 141 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGQTLEAKIIELDKNRNNVVLSRRAWLEQT 199
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QSEVRHGFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVAV 259
Query: 311 GDTLKV 316
GD + V
Sbjct: 260 GDEVTV 265
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G E II ++
Sbjct: 131 VEGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGQTLEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAWLEQTQSEVRHGFLTQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 245 LSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHQIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L P+GAF+ + GI GL+H+S+++ V V+Q D + V +
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKI 353
>gi|383831036|ref|ZP_09986125.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
gi|383463689|gb|EID55779.1| ribosomal protein S1 [Saccharomonospora xinjiangensis XJ-54]
Length = 493
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 23 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 76
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 77 HDVDPAEVVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 136
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 137 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 195
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 196 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 255
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 256 VVEVGQEVTV 265
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMV 351
>gi|406575491|ref|ZP_11051195.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
gi|404555203|gb|EKA60701.1| 30S ribosomal protein S1 [Janibacter hoylei PVAS-1]
Length = 496
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 133/235 (56%), Gaps = 18/235 (7%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH-VEEAGIVP-GLKE 151
DFN G V+G + D L+DI K+ +P++E I KH V+ + IV G
Sbjct: 34 DFND--GDIVEGHIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPSEIVAVGDSV 88
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 89 EALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDI-GLR 147
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 GFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKE 207
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ GD + V
Sbjct: 208 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGDEVTV 262
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA---------EVEGLRGF 213
+++VLS R AW Q + +K G + GVV+ ++ G+ G
Sbjct: 183 NNVVLSRR------AWLEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFVDLGGVDGL 236
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G ++ ++ ++VD ++ R+ LS + D IG
Sbjct: 237 VHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIG 296
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 297 QVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHV 333
>gi|375101674|ref|ZP_09747937.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
gi|374662406|gb|EHR62284.1| ribosomal protein S1 [Saccharomonospora cyanea NA-134]
Length = 493
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 23 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 76
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 77 HDVDPAEVVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 136
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 137 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 195
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 196 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 255
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 256 VVEVGQEVTV 265
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMV 351
>gi|384045064|ref|YP_005493081.1| 30S ribosomal protein S1 [Bacillus megaterium WSH-002]
gi|345442755|gb|AEN87772.1| 30S ribosomal protein S1-like protein [Bacillus megaterium WSH-002]
Length = 384
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 130/233 (55%), Gaps = 21/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQE-ACIHKIKHVEEAG--IVPGLKEEF 153
E+G VKGT+ + + VD+ +K +P E A +H +E+AG I G + E
Sbjct: 20 EVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELASLH----IEKAGDVIQEGAEVEA 75
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+I DD LVLS R + E AW+ S V + V KGG+V ++ G+RGF
Sbjct: 76 KVI--KVEDDLLVLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDI-GVRGF 132
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S + + + E + L +K VE+D+E++R++LS+R + + Q L
Sbjct: 133 IPASLVETHFVDDFAEYQDQTLTVKVVELDKEKNRVILSHRAVVEEELVQQKENVLESLK 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF+D+GG++GL+H+SQ+SH RV + V+ GDT+KV
Sbjct: 193 EGQVLEGTVQRLTDFGAFVDVGGVDGLVHISQLSHTRVEKPSDVVAEGDTVKV 245
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 165 LVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS- 220
++LS R +++ EL ++ L+S E V++G V G +V G+ G V SQ+S
Sbjct: 168 VILSHRAVVEEELVQQKENVLESLKEGQVLEGTVQRLTDFGAFVDVGGVDGLVHISQLSH 227
Query: 221 ------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
S AE G + ++ + VD+ R+ LS + + ++ +L G VV G
Sbjct: 228 TRVEKPSDVVAE---GDTVKVRVLSVDKSTGRVSLSIKDTLEGPWSNISTKLRQGDVVDG 284
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TV+ L +GAF+++ G+ GL+H+SQISH + VL G+ + V
Sbjct: 285 TVKRLVSFGAFVEVLPGVEGLVHISQISHKHIGTPHEVLSEGEKVTV 331
>gi|336325470|ref|YP_004605436.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
gi|336101452|gb|AEI09272.1| 30S ribosomal protein S1 [Corynebacterium resistens DSM 45100]
Length = 488
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I KH
Sbjct: 18 EDFLAAVDSTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 72 VDPGEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 AVGDEVTV 258
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|392944252|ref|ZP_10309894.1| ribosomal protein S1 [Frankia sp. QA3]
gi|392287546|gb|EIV93570.1| ribosomal protein S1 [Frankia sp. QA3]
Length = 493
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V G + D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVSV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|86739768|ref|YP_480168.1| 30S ribosomal protein S1 [Frankia sp. CcI3]
gi|86566630|gb|ABD10439.1| SSU ribosomal protein S1P [Frankia sp. CcI3]
Length = 492
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V G + D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVSV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|241896285|ref|ZP_04783581.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
gi|241870526|gb|EER74277.1| ribosomal protein S1 [Weissella paramesenteroides ATCC 33313]
Length = 405
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 98 ELGTKVKGTVFC-TDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEE--AGIVPGLKEEF 153
++G VKG V DNR +V I A +P +E + V +
Sbjct: 19 KVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPLRELTTDRDADVNDLVKVGDVLDLVVV 78
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
IG ++ S +LS R ++ AWE S D +V+ V A KGG+V +VEG+RGF
Sbjct: 79 STIGSDKEGGSYLLSKRRLEARRAWEEIASKHSVDDIVEAPVTQAVKGGLVVDVEGVRGF 138
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S I ++ + + G+ + K +E++ SRL+LS R + + ++ +L
Sbjct: 139 VPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSAALARIFDELS 198
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G V+ G V + +GAFID+GG++GL+HVS+ISH+RV+ + VL G+ +KV
Sbjct: 199 VGDVIEGKVARMTNFGAFIDLGGVDGLVHVSEISHERVSQPSDVLSVGEEVKV 251
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 96/174 (55%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYE---LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
II N AD L+LS R + E A R S V++GKV G ++ G+
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSAALARIFDELSVGDVIEGKVARMTNFGAFIDLGGVD 223
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLG- 263
G V S+IS + ++ +G+++ +K + +D E+ R+ LS + D+ A+
Sbjct: 224 GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPERERISLSIKATQPGPWDAAAEKAP 283
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G+V+ GTV+ + +GAF+++ G+ GL+HVSQISH +A+ + VL+ GD ++V
Sbjct: 284 AGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVQV 337
>gi|385676805|ref|ZP_10050733.1| 30S ribosomal protein S1 [Amycolatopsis sp. ATCC 39116]
Length = 498
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 25 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 78
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 79 VDPGEVVSVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVKGTVIEV 138
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 139 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 197
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 198 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 257
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 258 EVGQEVTV 265
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 185
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 186 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 244
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 245 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 304
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 305 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMV 351
>gi|111221225|ref|YP_712019.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
gi|111148757|emb|CAJ60433.1| 30S ribosomal protein S1 [Frankia alni ACN14a]
Length = 518
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V G + D L+DI K+ +P++E I H +
Sbjct: 58 EDFLAAVDKTIKFFND--GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 115
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 116 EVVSV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKDEDGVVTGTVIEVVK 173
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 174 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 232
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 233 QSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 292
Query: 311 GDTLKV 316
G + V
Sbjct: 293 GQEVTV 298
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 164 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 218
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 219 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 277
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 278 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 337
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 338 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 384
>gi|119962586|ref|YP_947812.1| 30S ribosomal protein S1 [Arthrobacter aurescens TC1]
gi|403527278|ref|YP_006662165.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
gi|119949445|gb|ABM08356.1| ribosomal protein S1 [Arthrobacter aurescens TC1]
gi|403229705|gb|AFR29127.1| 30S ribosomal protein S1 [Arthrobacter sp. Rue61a]
Length = 491
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGDVVAVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|227833197|ref|YP_002834904.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
gi|262184183|ref|ZP_06043604.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
gi|227454213|gb|ACP32966.1| 30S ribosomal protein S1 [Corynebacterium aurimucosum ATCC 700975]
Length = 486
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 141/248 (56%), Gaps = 18/248 (7%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ +E + G + + +++ + + + L+LS + QYE AW +L +++ V G V+
Sbjct: 73 NPDEV-VEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAVEELHAKEEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAYLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 TVGDEVTV 258
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 68 YERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
YER A +EE H+ E V GTV G ++DI + +L
Sbjct: 107 YERAWGA--------VEELHAKEEP----------VTGTVIEVVKGGLILDIGLR--GFL 146
Query: 128 PTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLS----LRMIQYELAWERCRQ 183
P A + +++ V + G + E II ++ +++VLS L Q E+ E Q
Sbjct: 147 P---ASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAYLEQTQSEVRSEFLHQ 203
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVE 239
LQ V KG V G ++ G+ G V S++S K +G ++ ++ ++
Sbjct: 204 LQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLD 262
Query: 240 VDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVS 294
VD ++ R+ LS + D +G +V G V L P+GAF+ + GI GL+H+S
Sbjct: 263 VDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHIS 322
Query: 295 QISHDRV 301
+++ V
Sbjct: 323 ELAQRHV 329
>gi|291562264|emb|CBL41080.1| Ribosomal protein S1 [butyrate-producing bacterium SS3/4]
Length = 298
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 133/252 (52%), Gaps = 16/252 (6%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
ME + EE ++L+K +G V GTV + +VD+ A + + +
Sbjct: 1 MESMDDYKEELEASLKKI----RVGDVVTGTVIDVTDDAVIVDLKAYADGVIRKDDLSED 56
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
++ E I PG + ++ N+ + ++VLS + LAW++ + + E VV K+
Sbjct: 57 PDFNMAEM-IHPGDEITATVMATNDGEGNMVLSKKEANQVLAWDKLKNMMEERTVVPVKI 115
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRK 253
G VA +EG+RGF+P S++S + + E GK + + + DEE RLVLS R+
Sbjct: 116 AEIVNAGAVAYLEGIRGFIPASRLSDEYVEDLKEFDGKTIEVTVITADEETHRLVLSGRE 175
Query: 254 AMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADI 304
A + + A+ +G+V+ GTV++LK YGAF+++ G+ GLLH+SQIS R+
Sbjct: 176 AAREKKQEETNKKIAKCEVGAVMKGTVETLKDYGAFVELENGLTGLLHISQISTKRIKHP 235
Query: 305 ATVLQPGDTLKV 316
VL+ G ++V
Sbjct: 236 GAVLKEGQEVRV 247
>gi|381210193|ref|ZP_09917264.1| 30S ribosomal protein S1 [Lentibacillus sp. Grbi]
Length = 376
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V GTV ++R LVDI K+ +P E H+E+AG + + +
Sbjct: 13 IGDIVTGTVLKVEDRQVLVDIGYKTEGIVPIGELSS---LHIEKAGDAVEEGDSLSLYVK 69
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD ++LS + + E AWE + V + ++ KGG+VA+V G+RGF+P S
Sbjct: 70 KLDDDEVILSKKAVDAEQAWETLEEKYQSGEVFETEIKEVVKGGLVADV-GVRGFIPASL 128
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
+ + + L K L +K V++D EQ+R++LS++ + D L G V+
Sbjct: 129 VETYYVDDFSGYLNKPLAVKIVDLDREQNRIILSHKAVVQDEMNAKKHEVLQSLEEGQVL 188
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +G F+++GGI+GL+H+SQ++H+ V + V+ GDT+ V
Sbjct: 189 EGTVQRLTNFGVFVNLGGIDGLVHISQLAHEHVEKASDVVAEGDTISV 236
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/164 (27%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 165 LVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++LS + ++Q E+ ++ LQS E V++G V GV + G+ G V SQ++
Sbjct: 159 IILSHKAVVQDEMNAKKHEVLQSLEEGQVLEGTVQRLTNFGVFVNLGGIDGLVHISQLAH 218
Query: 222 KST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIGTVQ 273
+ A +++ G + ++ + +D + R+ LS +K + A+ + ++ G V+ G V+
Sbjct: 219 EHVEKASDVVAEGDTISVEVLSIDRDNERISLSRKKTLPGPWANIEDRVSRGDVLEGKVK 278
Query: 274 SLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +GAF+++ G+ GL+H+SQI++ + VL+ G + V
Sbjct: 279 RLVNFGAFVEVFPGVEGLVHISQIANRHIGTPQEVLEIGQEINV 322
>gi|387503162|ref|YP_005944391.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
gi|335277207|gb|AEH29112.1| 30S ribosomal protein S1 [Propionibacterium acnes 6609]
Length = 498
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + LG+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYLGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYLGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|334336975|ref|YP_004542127.1| RNA binding S1 domain-containing protein [Isoptericola variabilis
225]
gi|334107343|gb|AEG44233.1| RNA binding S1 domain protein [Isoptericola variabilis 225]
Length = 491
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 147/263 (55%), Gaps = 24/263 (9%)
Query: 71 CRTAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSA 125
++AP V+ T ++F +A++ KY FN G V+GT+ D L+DI K+
Sbjct: 6 TKSAPQVAVNDIGTEDDFLAAVDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEG 62
Query: 126 YLPTQEACIHKIKHVEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQ 183
+P++E I KH + G V + + E +++ + + + L+LS + QYE AW +
Sbjct: 63 VIPSRELSI---KHDVDPGEVVAVGDVVEALVLQKEDKEGRLILSKKRAQYERAWGTIEK 119
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVD 241
++ ED VV G V+ KGG++ ++ GLRGF+P S + + + +GK++ K +E+D
Sbjct: 120 IKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYVGKEIEAKIIELD 178
Query: 242 EEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHV 293
+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+HV
Sbjct: 179 KNRNNVVLSRRAWLEQTQSEVRSTFLQTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHV 238
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
S++S + + V++ G + V
Sbjct: 239 SELSWKHIDHPSEVVEVGQEVTV 261
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 41/219 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 127 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYVGKEIEAKIIELDKNR 181
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 182 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RSGVVSSIVNFGAFVDL 229
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFA 289
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 328
>gi|308174080|ref|YP_003920785.1| RNA degradation presenting factor [Bacillus amyloliquefaciens DSM
7]
gi|384164854|ref|YP_005546233.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
gi|307606944|emb|CBI43315.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens DSM 7]
gi|328912409|gb|AEB64005.1| RNA degradation presenting factor [Bacillus amyloliquefaciens LL3]
Length = 382
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVNVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLI 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ+ +V V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|348171102|ref|ZP_08877996.1| 30S ribosomal protein S1 [Saccharopolyspora spinosa NRRL 18395]
Length = 499
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 25 TEEDFLAAVDQTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 78
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 79 HDVDPAEVVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 138
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 139 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW 197
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 198 LEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 257
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 258 VVEVGQEVTV 267
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + +
Sbjct: 307 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEVMI 353
>gi|237785408|ref|YP_002906113.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
gi|237758320|gb|ACR17570.1| 30S ribosomal protein S1 [Corynebacterium kroppenstedtii DSM 44385]
Length = 488
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H+I
Sbjct: 16 STEDFLAAIDSTIKY-FND--GDIVEGTVVKIDHDEVLLDIGYKTEGVIPSRELSIKHEI 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPNEVVEV--GDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQELEAKIIELDKHRNNVVLSRRAWL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VAVGDEVTV 258
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQELEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ G+ + V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVNVGEEVMV 344
>gi|227505035|ref|ZP_03935084.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
gi|227198399|gb|EEI78447.1| 30S ribosomal protein S1 [Corynebacterium striatum ATCC 6940]
Length = 486
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 141/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L +++ V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAVEELHAKEEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + E +G++L K +E+D++++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 111/247 (44%), Gaps = 37/247 (14%)
Query: 68 YERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
YER A +EE H+ E V GTV G ++DI + +L
Sbjct: 107 YERAWGA--------VEELHAKEEP----------VTGTVIEVVKGGLILDIGLR--GFL 146
Query: 128 PTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI----QYELAWERCRQ 183
P A + +++ V + G + E II ++ +++VLS R Q E+ E Q
Sbjct: 147 P---ASLVEMRRVRDLEPYIGQELEAKIIELDKQRNNVVLSRRAFLEQTQSEVRSEFLHQ 203
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVE 239
LQ V KG V G ++ G+ G V S++S K +G ++ ++ ++
Sbjct: 204 LQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLD 262
Query: 240 VDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVS 294
VD ++ R+ LS + D +G +V G V L P+GAF+ + GI GL+H+S
Sbjct: 263 VDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPGKVTKLVPFGAFVRVEEGIEGLVHIS 322
Query: 295 QISHDRV 301
+++ V
Sbjct: 323 ELAQRHV 329
>gi|291301239|ref|YP_003512517.1| RNA binding S1 domain-containing protein [Stackebrandtia
nassauensis DSM 44728]
gi|290570459|gb|ADD43424.1| RNA binding S1 domain protein [Stackebrandtia nassauensis DSM
44728]
Length = 507
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 128/218 (58%), Gaps = 19/218 (8%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH-VEEAGIVP-GL 149
KY FN G V+GTV D L+DI K+ +P++E I KH V+ A +V G
Sbjct: 39 KY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPAEVVSTGD 92
Query: 150 KEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG 209
+ E +++ + + + L+LS + QYE AW +++ ED VV+G V+ KGG++ ++ G
Sbjct: 93 QVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVRGSVIEVVKGGLILDI-G 151
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
LRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +Q++
Sbjct: 152 LRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRSWLEQTQSEVRTEFL 211
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 212 NKLAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 249
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 101/219 (46%), Gaps = 41/219 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 134 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 188
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+++VLS R +W Q QSE + + KG+V + GVV+ + FV
Sbjct: 189 NNVVLSRR------SW--LEQTQSEVRTEFLNKLAKGQV----RKGVVSSIVNFGAFVDL 236
Query: 217 SQISSKSTAEELLGK--DLP-----------LKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
+ EL K D P ++ +EVD ++ R+ LS + D Q
Sbjct: 237 GGVDGLVHVSELSWKHIDHPGEVVEVGKEVEVEVLEVDMDRERVSLSLKATQEDPWRQFA 296
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG +V G V L P+GAF+ + GI GL+H+S+++
Sbjct: 297 RTHAIGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 335
>gi|452976689|gb|EME76504.1| 30S ribosomal protein S1 [Bacillus sonorensis L12]
Length = 381
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K + +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVDIPNCKQTGIIPISELSS---LHVEKASDVVNVDDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + + + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFESKEIFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q++ L G
Sbjct: 130 SLVEAHFVEDFTDYKGKTLTLMVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQ 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 67/236 (28%), Positives = 117/236 (49%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLTLM 151
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQ-LQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R + + ER ++ LQ+ + V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS ++ + A +G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWANIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF+++ G+ GL+H+SQIS+ + VL+ G +KV
Sbjct: 270 VKPGDVLDGTVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQDVKV 325
>gi|158317247|ref|YP_001509755.1| 30S ribosomal protein S1 [Frankia sp. EAN1pec]
gi|158112652|gb|ABW14849.1| RNA binding S1 domain protein [Frankia sp. EAN1pec]
Length = 493
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A++K FN G V G + D L+DI K+ +P++E I H +
Sbjct: 33 EDFLAAVDKTIKFFND--GDIVDGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPH 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +L+ ED VV G V+ K
Sbjct: 91 EVVTV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKLKEEDGVVTGTVIEVVK 148
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 149 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQT 207
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q AQL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 208 QSEVRSEFLAQLAKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 267
Query: 311 GDTLKV 316
G + V
Sbjct: 268 GQEVTV 273
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 139 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 193
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL ++ + KG V G ++ G+ G V S+
Sbjct: 194 NNVVLSRRAWLEQTQSEVRSEFLAQL-AKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 252
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 253 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQVVPG 312
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 313 RVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVNVGDEILV 359
>gi|407980900|ref|ZP_11161668.1| 30S ribosomal protein S1 [Bacillus sp. HYC-10]
gi|407412316|gb|EKF34135.1| 30S ribosomal protein S1 [Bacillus sp. HYC-10]
Length = 383
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K +P E HVE+A V +E +
Sbjct: 14 EVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSS---LHVEKASDVVKDGDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGS 266
S + + + + GK L L VE+D E++R++LS+R + Q +L +GS
Sbjct: 130 SLVEAHYVEDFTDYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAHVEKPSDVVEEGQEVKV 239
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G V
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHYVEDFTDYKGKTLSLV 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ +V V+ GKV G ++ G+
Sbjct: 152 VVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISS------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEE--GQEVKVKVLAVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQISH + VL+ G T+KV
Sbjct: 270 VQQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPQEVLEEGQTVKV 325
>gi|429729646|ref|ZP_19264303.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
gi|429149040|gb|EKX92030.1| 30S ribosomal protein S1 [Corynebacterium durum F0235]
Length = 491
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 18 EDFLAAVDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 72 VDPGEVVQVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQEIEAKIIELDKNRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 AVGDEVTV 258
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQEIEAKIIELDKNR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + M D +G +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATMEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|68263494|emb|CAI36982.1| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 516
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I KH
Sbjct: 46 EDFLAAVDSTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 99
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +L+ + V G V+
Sbjct: 100 VDPGEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVIEV 159
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 160 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAWLE 218
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVSQ+S + + V+
Sbjct: 219 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSQLSWKHIDHPSEVV 278
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 279 AVGDEVTV 286
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 152 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKHR 206
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V SQ
Sbjct: 207 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSQ 265
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 266 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 325
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 326 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 357
>gi|398306780|ref|ZP_10510366.1| 30S ribosomal protein S1 [Bacillus vallismortis DV1-F-3]
Length = 382
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGEVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLVKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q+ L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQSNKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E + ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQSNKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS + + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKDTLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKSGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|289705499|ref|ZP_06501891.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
gi|289557728|gb|EFD51027.1| 30S ribosomal protein S1 [Micrococcus luteus SK58]
Length = 485
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D L+DI K+ +P++E I +E V E
Sbjct: 30 KY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVE 86
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
V+ E++ + L+LS + QYE AW +++ ED VV+G V+ KGG++ ++ GLR
Sbjct: 87 ALVLTKEDK-EGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGLILDI-GLR 144
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+ L K +E+D+ ++ +VLS R + +Q++
Sbjct: 145 GFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHK 204
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V GTV S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 LEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 259
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 125 VEGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQKLEAKIIELDKNR 179
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V G V G ++ G+
Sbjct: 180 NNVVLSRR------AW--LEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVD 231
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----- 262
G V S++S K +G+++ ++ +EVD ++ R+ LS KA + QL
Sbjct: 232 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLS-LKATQEDPWQLFARTH 290
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ + V+ D L V
Sbjct: 291 ALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFV 345
>gi|225022623|ref|ZP_03711815.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305682064|ref|ZP_07404868.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
gi|224944531|gb|EEG25740.1| hypothetical protein CORMATOL_02665 [Corynebacterium matruchotii
ATCC 33806]
gi|305658537|gb|EFM48040.1| 30S ribosomal protein S1 [Corynebacterium matruchotii ATCC 14266]
Length = 493
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 138/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
EEF +A++ KY FN G V+GTV D+ L+DI K+ +P +E I H +
Sbjct: 18 EEFLAAIDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPVRELSIKHDVDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 75 DEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEAVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQ 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVS 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|308177716|ref|YP_003917122.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
gi|307745179|emb|CBT76151.1| 30S ribosomal protein S1 [Arthrobacter arilaitensis Re117]
Length = 491
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I KH
Sbjct: 23 EDFLAAVDATIKY-FND--GDLVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 141 EEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G + G E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 77 VDPGEVVTVGDSVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKEEDGVVTGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQEIEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 196 QTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 255
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 256 EVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQEIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|260578011|ref|ZP_05845934.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
gi|258603838|gb|EEW17092.1| 30S ribosomal protein S1 [Corynebacterium jeikeium ATCC 43734]
Length = 488
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I K
Sbjct: 16 SAEDFLAAVDSTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + + L+LS + QYE AW +L+ + V G V+
Sbjct: 70 HDVDPGEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAW 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVSQ+S + +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSQLSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 249 VVAVGDEVTV 258
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V SQ
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSQ 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|161986623|ref|YP_250600.2| 30S ribosomal protein S1 [Corynebacterium jeikeium K411]
Length = 488
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I K
Sbjct: 16 SAEDFLAAVDSTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + + L+LS + QYE AW +L+ + V G V+
Sbjct: 70 HDVDPGEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGTIEELKKNEEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAW 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVSQ+S + +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSQLSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 249 VVAVGDEVTV 258
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V SQ
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSQ 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|332670357|ref|YP_004453365.1| RNA binding S1 domain-containing protein [Cellulomonas fimi ATCC
484]
gi|332339395|gb|AEE45978.1| RNA binding S1 domain protein [Cellulomonas fimi ATCC 484]
Length = 510
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 43 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 96
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 97 VDPGEVVKVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEV 156
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 157 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLE 215
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 216 QTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 275
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 276 EVGQEVTV 283
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 149 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 203
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 204 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 251
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 252 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 311
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 312 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFV 369
>gi|256379526|ref|YP_003103186.1| 30S ribosomal protein S1 [Actinosynnema mirum DSM 43827]
gi|255923829|gb|ACU39340.1| RNA binding S1 domain protein [Actinosynnema mirum DSM 43827]
Length = 495
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 24 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 80
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 81 DPNEVVKV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIE 138
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 139 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWL 197
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 198 EQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 257
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 258 VEVGQEVTV 266
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 132 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 186
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 187 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 245
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD E+ R+ LS + D Q IG +V G
Sbjct: 246 LSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWRQFARTHAIGQIVPG 305
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 306 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMV 352
>gi|154686535|ref|YP_001421696.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens FZB42]
gi|385265263|ref|ZP_10043350.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
gi|154352386|gb|ABS74465.1| YpfD [Bacillus amyloliquefaciens FZB42]
gi|385149759|gb|EIF13696.1| 30S ribosomal protein S1 [Bacillus sp. 5B6]
Length = 382
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLI 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ+ +V V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWSQVGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|339624198|ref|ZP_08659987.1| SSU ribosomal protein S1P [Fructobacillus fructosus KCTC 3544]
Length = 396
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 138/254 (54%), Gaps = 18/254 (7%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEACIHKI 137
+S T E +ALE D ++G V G V DN A++ + +P +E +
Sbjct: 1 MSDTNSELLAALESAD-QIKVGDVVTGEVLAIDNDNQAVIGLHTGEEGVVPAREYSDDRS 59
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++ + + G E V++ +D + +LS + ++ AWE+ + + VV
Sbjct: 60 VNLAD-DLKVGDTIETVVVSNVTSDKEGVAYLLSKKRLEARKAWEKLSFGEGD--VVDAT 116
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
V+ A +GG++ +V G+RGFVP S ++ + S + G+D+ + +E+D ++RL+LS +
Sbjct: 117 VLNAVRGGLIVDVAGIRGFVPASMVAERFVSDLNQFKGQDIKAEVIEIDPAKARLILSRK 176
Query: 253 KAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
A +A+ L +G VV GTV L +GAF+D+GG++GL+HVS+ISHDRV +
Sbjct: 177 AVAAQERAEKLQEAFSRLTVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNP 236
Query: 305 ATVLQPGDTLKVCL 318
A VL G+ + V +
Sbjct: 237 ADVLSKGEKVNVKI 250
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 83/263 (31%), Positives = 127/263 (48%), Gaps = 28/263 (10%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGV++ L E A EK F G V TV G +VD+ A ++P
Sbjct: 81 TSDKEGVAYLLSKKRLEARKAWEKLSFGE--GDVVDATVLNAVRGGLIVDV-AGIRGFVP 137
Query: 129 TQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE- 187
A + + V + G + +I + A L+LS + + A ER +LQ
Sbjct: 138 ---ASMVAERFVSDLNQFKGQDIKAEVIEIDPAKARLILSRKAVA---AQERAEKLQEAF 191
Query: 188 -----DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFV 238
VV+G V G ++ G+ G V S+IS K+ A+ L G+ + +K +
Sbjct: 192 SRLTVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLSKGEKVNVKIL 251
Query: 239 EVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHV 293
+D E+ R+ LS + + G+V+ GTV+ +K +GAF++I GI GL+HV
Sbjct: 252 ALDTERGRISLSIKATQPGPWDEFAEKAPAGTVLEGTVKRVKDFGAFVEIFPGIEGLVHV 311
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
SQISH RV + A VL+ GD +KV
Sbjct: 312 SQISHKRVENPADVLKSGDKVKV 334
>gi|407643745|ref|YP_006807504.1| 30S ribosomal protein S1 [Nocardia brasiliensis ATCC 700358]
gi|407306629|gb|AFU00530.1| 30S ribosomal protein S1 [Nocardia brasiliensis ATCC 700358]
Length = 490
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 20/228 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 19 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 75
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 76 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 133
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 134 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 192
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 193 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 240
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKS----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 345
>gi|379708317|ref|YP_005263522.1| 30S ribosomal protein S1 (modular protein) [Nocardia
cyriacigeorgica GUH-2]
gi|374845816|emb|CCF62886.1| 30S ribosomal protein S1 (modular protein) [Nocardia
cyriacigeorgica GUH-2]
Length = 488
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 132/230 (57%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 17 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 73
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 74 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 131
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 132 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 190
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 191 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 240
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 345
>gi|269127063|ref|YP_003300433.1| RNA binding S1 domain-containing protein [Thermomonospora curvata
DSM 43183]
gi|268312021|gb|ACY98395.1| RNA binding S1 domain protein [Thermomonospora curvata DSM 43183]
Length = 487
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 138/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
EEF +A++ KY FN G V+GTV D L+DI K+ +P++E I H +
Sbjct: 23 EEFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 HEVVKV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 33/236 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V KG V G ++ G+
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD 235
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 236 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 295
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V +
Sbjct: 296 IGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKI 351
>gi|399053696|ref|ZP_10742495.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|433544588|ref|ZP_20500968.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
gi|398048473|gb|EJL40945.1| ribosomal protein S1 [Brevibacillus sp. CF112]
gi|432184167|gb|ELK41688.1| hypothetical protein D478_12831 [Brevibacillus agri BAB-2500]
Length = 390
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 129/228 (56%), Gaps = 12/228 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G VK TV +++ ALVD+ K +P E ++ V + + G E +I
Sbjct: 17 VGDVVKATVTKVEDKQALVDVGYKYDGLIPISELSPLHVEKVSDV-VAVGDTFEVKVIKL 75
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N+ + LV+S + + E +W Q +++ V KGG+V +V G+RGF+P S
Sbjct: 76 NDEKEELVVSKKAVAMESSWAELEQKMQSGEIIEATVKEVVKGGLVVDV-GVRGFIPASM 134
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR-----KAMADSQA---QLGIGSVV 268
+ + + GK L LK VE+D+E+++++LS++ +A A Q+ Q+ +G V+
Sbjct: 135 VERHFVEDFSDYKGKSLTLKVVEMDKEKNKVILSHKAVLEEEAKAKKQSVLDQIQVGQVL 194
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ + +G F+DIGG++GL+HVS+++ +RV + V++ GD ++V
Sbjct: 195 EGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVEKPSDVVKEGDKVQV 242
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 75/138 (54%), Gaps = 9/138 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
V++G V GV ++ G+ G V S+++ K + G + +K +++D E
Sbjct: 193 VLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVEKPSDVVKEGDKVQVKVLKIDRENE 252
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS ++ A A++ GS+ GTV+ L +GAF+++ GI GL+H+SQI++ R
Sbjct: 253 RIGLSIKETQAGPWAKVAEEFKAGSITTGTVKRLVSFGAFVEVAPGIEGLVHISQIANRR 312
Query: 301 VADIATVLQPGDTLKVCL 318
V VL+ G ++V +
Sbjct: 313 VNTPGEVLKEGQEVQVKI 330
>gi|384100135|ref|ZP_10001200.1| 30S ribosomal protein S1 [Rhodococcus imtechensis RKJ300]
gi|419965175|ref|ZP_14481124.1| 30S ribosomal protein S1 [Rhodococcus opacus M213]
gi|432342246|ref|ZP_19591540.1| 30S ribosomal protein S1 [Rhodococcus wratislaviensis IFP 2016]
gi|383842356|gb|EID81625.1| 30S ribosomal protein S1 [Rhodococcus imtechensis RKJ300]
gi|414569571|gb|EKT80315.1| 30S ribosomal protein S1 [Rhodococcus opacus M213]
gi|430772751|gb|ELB88485.1| 30S ribosomal protein S1 [Rhodococcus wratislaviensis IFP 2016]
Length = 494
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 20/228 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
>gi|375096179|ref|ZP_09742444.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
gi|374656912|gb|EHR51745.1| ribosomal protein S1 [Saccharomonospora marina XMU15]
Length = 497
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 141/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 25 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 78
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G E +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 79 HDVDPAEVVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKDKDEPVSGTVI 138
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 139 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAY 197
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 198 LEQTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 257
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 258 VVEVGQEVTV 267
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VSGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGTEVMV 353
>gi|375362802|ref|YP_005130841.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|384265885|ref|YP_005421592.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387898896|ref|YP_006329192.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|394993524|ref|ZP_10386269.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|421731213|ref|ZP_16170339.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429505676|ref|YP_007186860.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451346526|ref|YP_007445157.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452856047|ref|YP_007497730.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
gi|371568796|emb|CCF05646.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|380499238|emb|CCG50276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|387173006|gb|AFJ62467.1| small subunit ribosomal protein S1 [Bacillus amyloliquefaciens Y2]
gi|393805636|gb|EJD67010.1| 30S ribosomal protein S1 [Bacillus sp. 916]
gi|407075367|gb|EKE48354.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429487266|gb|AFZ91190.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449850284|gb|AGF27276.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens IT-45]
gi|452080307|emb|CCP22069.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Bacillus amyloliquefaciens subsp. plantarum UCMB5036]
Length = 382
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIVNVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFDTKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLI 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ+ +V V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKQGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>gi|226360123|ref|YP_002777901.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
gi|226238608|dbj|BAH48956.1| 30S ribosomal protein S1 [Rhodococcus opacus B4]
Length = 494
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 20/228 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
>gi|433449333|ref|ZP_20412197.1| 30S ribosomal protein S1 [Weissella ceti NC36]
gi|429538847|gb|ELA06885.1| 30S ribosomal protein S1 [Weissella ceti NC36]
Length = 416
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/251 (33%), Positives = 133/251 (52%), Gaps = 16/251 (6%)
Query: 84 EEFHSALEKYDFNSEL--GTKVKGTVFC-TDNRGALVDIT-AKSSAYLPTQEACIHKIKH 139
EE + L D +E+ G VKG V DNR +V I A +P +E +
Sbjct: 3 EENNELLAALDSVAEVKVGDVVKGEVLAIDDNRQVIVGIEGAGVEGVIPMRELTSDRDAD 62
Query: 140 VEEAGIVPGLKEEFVI--IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
V + V + + V+ IG ++ S +LS R ++ AWE + +V+ V
Sbjct: 63 VNDLVKVGDVIDLVVVSTIGSDKEGGSYLLSKRRLEARRAWEEIASKFNAGDIVEAPVTQ 122
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG+V +V G+RGFVP S I ++ + + G+ + K +E+D +SRL+LS R +
Sbjct: 123 VVKGGLVVDVAGVRGFVPASMIENRFVQDLNQYKGQTIRAKIIEIDPTESRLILSRRDVL 182
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+ +++ L G VV G V + +GAFID+GG++GL+HVS+ISHDRV+ + V
Sbjct: 183 NEERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISHDRVSQPSDV 242
Query: 308 LQPGDTLKVCL 318
L GD +KV +
Sbjct: 243 LAVGDDVKVKI 253
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 24/170 (14%)
Query: 165 LVLSLRMIQYELAWERCRQLQ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
L+LS R + E ER L +E VV+GKV G ++ G+ G V S+
Sbjct: 174 LILSRRDVLNE---ERSEALSRIFNELAEGDVVEGKVARMTNFGAFIDLGGVDGLVHVSE 230
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR-------KAMADSQAQLGIGSV 267
IS ++ +G D+ +K + +D E+ R+ LS + +A A++ + G+V
Sbjct: 231 ISHDRVSQPSDVLAVGDDVKVKILGLDPEKERISLSIKATQPGPWEAAAENAPE---GTV 287
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GTV+ + +GAF+++ G+ GL+HVSQI+H V + A VL GD + V
Sbjct: 288 LEGTVKRVVDFGAFVEVFPGVEGLVHVSQIAHKHVNNPADVLTAGDKVNV 337
>gi|323356451|ref|YP_004222847.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
gi|323272822|dbj|BAJ72967.1| 30S ribosomal protein S1 [Microbacterium testaceum StLB037]
Length = 484
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 137/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H +
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPN 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +++ D VV G V+ K
Sbjct: 80 EVVNV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENDGVVTGSVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + +
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEQT 196
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q++ L G V GTV S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSESRTTFLNNLHKGQVRKGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/219 (27%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGSVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSED-----------VVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R + Q QSE V KG V G ++ G+
Sbjct: 183 NNVVLSRRAL--------LEQTQSESRTTFLNNLHKGQVRKGTVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K A E++ G+++ ++ +EVD ++ R+ LS + D
Sbjct: 235 GLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQEDPWQVFARTHA 294
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
IG + G V L P+GAF+ + GI GL+H+S++S V
Sbjct: 295 IGQIAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHV 333
>gi|433608430|ref|YP_007040799.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
gi|407886283|emb|CCH33926.1| 30S ribosomal protein S1 [Saccharothrix espanaensis DSM 44229]
Length = 498
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++K Y FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 24 TEEDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 80
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 81 DPNEVVKV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEKDEPVKGTVIE 138
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 139 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWL 197
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 198 EQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 257
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 258 VEVGQEVTV 266
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 132 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 186
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 187 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 245
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD E+ R+ LS + D Q IG +V G
Sbjct: 246 LSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWRQFARTHAIGQIVPG 305
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 306 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMV 352
>gi|134101930|ref|YP_001107591.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|291007060|ref|ZP_06565033.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
gi|133914553|emb|CAM04666.1| 30S ribosomal protein S1 [Saccharopolyspora erythraea NRRL 2338]
Length = 501
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 142/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 25 TEEDFLAAVDQTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 78
Query: 139 H-VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H V+ A +V G E +++ + + + L+LS + QYE AW +L+ +D V+G V+
Sbjct: 79 HDVDPAEVVTVGDFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKEKDEPVRGTVI 138
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R
Sbjct: 139 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAW 197
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 198 LEQTQSEVRSEFLNQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 257
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 258 VVEVGQEVTV 267
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 111/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VRGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAWLEQTQSEVRSEFLNQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + +
Sbjct: 307 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDDVMI 353
>gi|297559937|ref|YP_003678911.1| RNA binding S1 domain-containing protein [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296844385|gb|ADH66405.1| RNA binding S1 domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 496
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 22 EAFLAAIDETIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 75
Query: 141 EEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 76 VDPGEVVAVGDQVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEV 135
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 136 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 194
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G + G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 195 QTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 254
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 255 EVGQEVTV 262
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE + KG V G ++ G+
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 235 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 294
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEEGIEGLVHISELA 329
>gi|443672863|ref|ZP_21137942.1| 30S ribosomal protein S1 [Rhodococcus sp. AW25M09]
gi|443414529|emb|CCQ16280.1| 30S ribosomal protein S1 [Rhodococcus sp. AW25M09]
Length = 499
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 132/230 (57%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 17 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 73
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 74 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 131
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 132 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 190
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 191 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 240
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLSLR----MIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGD 341
>gi|302868826|ref|YP_003837463.1| RNA binding S1 domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315504704|ref|YP_004083591.1| RNA binding s1 domain-containing protein [Micromonospora sp. L5]
gi|302571685|gb|ADL47887.1| RNA binding S1 domain protein [Micromonospora aurantiaca ATCC
27029]
gi|315411323|gb|ADU09440.1| RNA binding S1 domain protein [Micromonospora sp. L5]
Length = 494
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKS----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|220912560|ref|YP_002487869.1| 30S ribosomal protein S1 [Arthrobacter chlorophenolicus A6]
gi|219859438|gb|ACL39780.1| RNA binding S1 domain protein [Arthrobacter chlorophenolicus A6]
Length = 491
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVP--GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGDVVSVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|116670612|ref|YP_831545.1| 30S ribosomal protein S1 [Arthrobacter sp. FB24]
gi|116610721|gb|ABK03445.1| SSU ribosomal protein S1P [Arthrobacter sp. FB24]
Length = 491
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVP--GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGDVVSVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|363423025|ref|ZP_09311096.1| 30S ribosomal protein S1 [Rhodococcus pyridinivorans AK37]
gi|359732166|gb|EHK81186.1| 30S ribosomal protein S1 [Rhodococcus pyridinivorans AK37]
Length = 486
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 132/230 (57%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|423719444|ref|ZP_17693626.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
gi|383367536|gb|EID44813.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidans TNO-09.020]
Length = 387
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 135/250 (54%), Gaps = 51/250 (20%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQE-ACIH----------------KIKHV 140
+G V+G V +++ LVDI +K S +P E + +H K+K V
Sbjct: 14 VGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAKVKKV 73
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE----RCRQLQSEDVVVKGKVV 196
EE GENE D L+LS + + E AWE R ++ +VVVK V
Sbjct: 74 EE--------------GENEEDGLLILSKKAVDAERAWEELERRFASGETFEVVVKDIV- 118
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG+VA+V G+RGF+P S + + + GK L +K VE+D E++R++LS+R
Sbjct: 119 ---KGGLVADV-GVRGFIPASLVEPHYVEDFSDYKGKTLAVKVVELDREKNRVILSHRAV 174
Query: 255 MADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ + Q ++L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA +
Sbjct: 175 VEEEQERQRKEALSRLETGQVLEGIVRRITDFGVFVDVGGFDGLVHISQLSHTRVAHPSD 234
Query: 307 VLQPGDTLKV 316
V+Q G+T+KV
Sbjct: 235 VVQEGETVKV 244
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A G+ + +K + VDEE R+ LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENGRVSLSIKEALPS 266
Query: 258 SQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
++ G +V G V+ L P+GAF++I GI GL+H+SQIS R+ VL+ G+
Sbjct: 267 PWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGE 326
Query: 313 TLK 315
+K
Sbjct: 327 EVK 329
>gi|325963167|ref|YP_004241073.1| 30S ribosomal protein S1 [Arthrobacter phenanthrenivorans Sphe3]
gi|323469254|gb|ADX72939.1| SSU ribosomal protein S1P [Arthrobacter phenanthrenivorans Sphe3]
Length = 492
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVP--GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGDVVSVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|238060171|ref|ZP_04604880.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
gi|237881982|gb|EEP70810.1| 30S ribosomal protein S1 [Micromonospora sp. ATCC 39149]
Length = 497
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|433455415|ref|ZP_20413498.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
gi|432197620|gb|ELK53989.1| 30S ribosomal protein S1 [Arthrobacter crystallopoietes BAB-32]
Length = 491
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TPEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGEVVAVGDEVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|424858285|ref|ZP_18282317.1| 30S ribosomal protein S1 [Rhodococcus opacus PD630]
gi|356661972|gb|EHI42271.1| 30S ribosomal protein S1 [Rhodococcus opacus PD630]
Length = 489
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 132/230 (57%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 13 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 69
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 70 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 127
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 128 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 186
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 187 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 236
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 121 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 175
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 176 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 234
Query: 219 ISSKS----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 235 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 294
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 295 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 326
>gi|330469194|ref|YP_004406937.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
gi|328812165|gb|AEB46337.1| 30S ribosomal protein S1 [Verrucosispora maris AB-18-032]
Length = 495
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|52080799|ref|YP_079590.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|319645244|ref|ZP_07999477.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|404489681|ref|YP_006713787.1| 30S ribosomal protein S1 [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423682764|ref|ZP_17657603.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
gi|52004010|gb|AAU23952.1| Nucleic acid-binding protein [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|52348671|gb|AAU41305.1| 30S ribosomal protein S1-like protein [Bacillus licheniformis DSM
13 = ATCC 14580]
gi|317393053|gb|EFV73847.1| YpfD protein [Bacillus sp. BT1B_CT2]
gi|383439538|gb|EID47313.1| 30S ribosomal protein S1 [Bacillus licheniformis WX-02]
Length = 382
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 125/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K + +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVDIPNCKQTGIIPISELSS---LHVEKASDVVNVDDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFESKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q++ L G
Sbjct: 130 SLVEAHFVEDFTDYKGKTLTLIVVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQ 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 239
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLTLI 151
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQ-LQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R + + ER ++ LQ+ + V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQSERKQEFLQTLEAGQVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+D+ +K + VD + R+ LS ++ + + +G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWSNIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF+++ G+ GL+H+SQIS+ + VL+ G +KV
Sbjct: 270 VKPGDVLDGKVQRLVSFGAFVEVLPGVEGLVHISQISNKHIGTPHEVLEEGQDVKV 325
>gi|443292877|ref|ZP_21031971.1| 30S ribosomal protein S1 [Micromonospora lupini str. Lupac 08]
gi|385884087|emb|CCH20122.1| 30S ribosomal protein S1 [Micromonospora lupini str. Lupac 08]
Length = 499
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVTVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|227499452|ref|ZP_03929563.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
gi|227218514|gb|EEI83757.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
tetradius ATCC 35098]
Length = 687
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 13/245 (5%)
Query: 81 FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137
FT EEF ++LE K + E+ VKGTV + VDI ++ + E +
Sbjct: 277 FTKEEFMNSLEDSLKKIYPKEI---VKGTVIDVKDDEVFVDIQFRADGIIKLDEMTEEEA 333
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
K + + V G + + +I ++ + ++ LS R ++ W+ Q D +V G+VV
Sbjct: 334 KDPKNSFNV-GDEIDVFVIKLDDGEGNVALSTRRVEGMKVWQELAQKAENDELVHGEVVS 392
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
NKGG+ V G+ GFVP SQI++ ++ +G+ LK + +DE ++RLVLS + +
Sbjct: 393 FNKGGLTVNVNGVNGFVPASQIATYFVKNFKKFVGEQWDLKIISIDERKNRLVLSRKDVV 452
Query: 256 ADS----QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+ +L G VV G V L +GAF+++ G++GLLHVS I+ RV + VL G
Sbjct: 453 EEELDNLWDELEEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWSRVEHPSDVLSVG 512
Query: 312 DTLKV 316
D ++V
Sbjct: 513 DEIEV 517
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 115/233 (49%), Gaps = 23/233 (9%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N EL V G V + G V++ + ++P + + +K+ ++ G + + I
Sbjct: 382 NDEL---VHGEVVSFNKGGLTVNVNG-VNGFVPASQIATYFVKNFKK---FVGEQWDLKI 434
Query: 156 IGENEADDSLVLSLR-MIQYELA--WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I +E + LVLS + +++ EL W+ + Q VVKGKV G EV GL G
Sbjct: 435 ISIDERKNRLVLSRKDVVEEELDNLWDELEEGQ----VVKGKVARLTDFGAFVEVNGLDG 490
Query: 213 FVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
+ S I+ +G ++ +K +++++E++R+ L ++ + +
Sbjct: 491 LLHVSDIAWSRVEHPSDVLSVGDEIEVKILKLNQEKNRISLGRKQLLEKPFEAFANHHEV 550
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V +L +GAF+++ G+ GL+HVS+IS + V + L GD ++V
Sbjct: 551 GDVVTGKVVNLLDFGAFVEVADGVEGLVHVSEISWEHVEKPSDELNVGDEIEV 603
>gi|359778625|ref|ZP_09281888.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
gi|359304084|dbj|GAB15717.1| 30S ribosomal protein S1 [Arthrobacter globiformis NBRC 12137]
Length = 491
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVP--GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGDVVSVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 GTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|145595655|ref|YP_001159952.1| 30S ribosomal protein S1 [Salinispora tropica CNB-440]
gi|145304992|gb|ABP55574.1| SSU ribosomal protein S1P [Salinispora tropica CNB-440]
Length = 493
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|444305869|ref|ZP_21141645.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
gi|443481791|gb|ELT44710.1| 30S ribosomal protein S1 [Arthrobacter sp. SJCon]
Length = 491
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 80/250 (32%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 21 TAEDFLAAVDATIKY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGEVVSVGDQVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 292 RTHALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 349
>gi|111017993|ref|YP_700965.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
gi|110817523|gb|ABG92807.1| 30S ribosomal protein S1 [Rhodococcus jostii RHA1]
Length = 494
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 132/230 (57%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGIVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGIVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
>gi|397730240|ref|ZP_10496999.1| S1 RNA binding domain protein [Rhodococcus sp. JVH1]
gi|396933632|gb|EJJ00783.1| S1 RNA binding domain protein [Rhodococcus sp. JVH1]
Length = 494
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 131/228 (57%), Gaps = 20/228 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGIVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 104/212 (49%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGIVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 331
>gi|333370713|ref|ZP_08462697.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
gi|332977266|gb|EGK14058.1| 30S ribosomal protein S1 [Desmospora sp. 8437]
Length = 391
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 18/230 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV--PGLKEEFVIIG 157
G VKG V ++ +VD+ K +P E HV++A V G + E +I
Sbjct: 27 GDIVKGKVTKVEDHQVMVDVNYKFDGVIPISELSSL---HVDKASDVLSEGDEVEVKVIR 83
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
N+ +D LVLS + + + AWE +Q ++ +V KGG+V ++ G+RGF+P S
Sbjct: 84 INDEEDKLVLSKKAVDADRAWEELQQKFESGETLEAEVADVVKGGLVVDL-GVRGFIPAS 142
Query: 218 QISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGS 266
+ + + G+ L LK +E+D +++L+LS RKA+ D +A L G
Sbjct: 143 LVERHYVEDFSDYKGRKLSLKVIEIDPVKNKLILS-RKAVLDEEADQRKQETLAGLQPGQ 201
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ GTVQ L +GAF+DIGG++GL+HVS+++ +RV + VL GD ++V
Sbjct: 202 VMEGTVQRLTDFGAFVDIGGVDGLVHVSELAWNRVEHPSEVLSEGDQVQV 251
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 54/295 (18%)
Query: 35 LNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYD 94
+N ++K ++S A+ R EEL Q FE TLE
Sbjct: 84 INDEEDKLVLSKKAVDA--DRAWEELQQKFESGE-------------TLE---------- 118
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
+E+ VKG G +VD+ + ++P A + + +VE+ G K
Sbjct: 119 --AEVADVVKG--------GLVVDLGVR--GFIP---ASLVERHYVEDFSDYKGRKLSLK 163
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQ----LQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I + + L+LS + + E A +R ++ LQ V+ +G V G ++ G+
Sbjct: 164 VIEIDPVKNKLILSRKAVLDEEADQRKQETLAGLQPGQVM-EGTVQRLTDFGAFVDIGGV 222
Query: 211 RGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQL 262
G V S+++ E+L G + +K ++VD++ R+ LS ++ ++
Sbjct: 223 DGLVHVSELAWNRVEHPSEVLSEGDQVQVKVLKVDQQNERISLSIKETQPGPWEKVSEEI 282
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTV+ L +GAF+++ G+ GL+H+SQIS +A + L+ G ++V
Sbjct: 283 KAGDIVTGTVKRLVSFGAFVEVYQGVEGLVHISQISRRHIATPSEELEEGQEVRV 337
>gi|422455909|ref|ZP_16532578.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
gi|315107101|gb|EFT79077.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA1]
Length = 498
Score = 114 bits (286), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 25/245 (10%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E F +A++ KY FN G V GTV D L+DI K+ +P++E I KH
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSI---KHD 90
Query: 141 EEAGIVPGLKEEFVIIGENEADDS--LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ V + +EF + + + D L+LS + QYE AW Q++ ED VV G V+
Sbjct: 91 VDPFEVVNVGDEFEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEV 150
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 151 VKGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLE 209
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIA 305
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 210 QTQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 269
Query: 306 TVLQP 310
V QP
Sbjct: 270 EVGQP 274
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|296129804|ref|YP_003637054.1| RNA binding S1 domain-containing protein [Cellulomonas flavigena
DSM 20109]
gi|296021619|gb|ADG74855.1| RNA binding S1 domain protein [Cellulomonas flavigena DSM 20109]
Length = 492
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 141/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I K
Sbjct: 21 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---K 74
Query: 139 HVEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGEVVKVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 194 LEQTQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 253
Query: 307 VLQPGDTLKV 316
V++ G + V
Sbjct: 254 VVEVGQEVTV 263
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 68/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDFDRERVSLSLKATQEDPWQAFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 292 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVEIPEQVVQVGDDVFV 349
>gi|172040820|ref|YP_001800534.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448823792|ref|YP_007416958.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
gi|171852124|emb|CAQ05100.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7109]
gi|448277289|gb|AGE36713.1| 30S ribosomal protein S1 [Corynebacterium urealyticum DSM 7111]
Length = 486
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ E+F +A++ KY FN G V+GT+ D+ L+DI K+ +P++E I K
Sbjct: 16 SAEDFLAAVDETIKY-FND--GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + V + +E +++ + + + L+LS + QYE AW QL+ D V G V+
Sbjct: 70 HDVDPNEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEQLKENDEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAY 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ ++Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 189 LEETQSAVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 249 VVTVGDEVTV 258
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 106/226 (46%), Gaps = 22/226 (9%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
A+E+ N E V GTV G ++DI + +LP A + +++ V + G
Sbjct: 113 AIEQLKENDE---PVTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIG 164
Query: 149 LKEEFVIIGENEADDSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
+ E II ++ +++VLS R Q + E QLQ V KG V G
Sbjct: 165 QEIEAKIIELDKHRNNVVLSRRAYLEETQSAVRSEFLHQLQKGQVR-KGVVSSIVNFGAF 223
Query: 205 AEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 224 VDLGGVDGLVHVSELSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWR 283
Query: 261 QLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG +V G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 284 VFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|403511314|ref|YP_006642952.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
gi|402802540|gb|AFR09950.1| S1 RNA binding domain protein [Nocardiopsis alba ATCC BAA-2165]
Length = 497
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 22 EAFLAAIDETIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 75
Query: 141 EEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 76 VDPGEVVAVGDQVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEV 135
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 136 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 194
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G + G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 195 QTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 254
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 255 EVGQEVTV 262
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE + KG V G ++ G+
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 235 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 294
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 295 IGQVVPGKVTKLVPFGAFVRVEEGIEGLVHISELA 329
>gi|38233738|ref|NP_939505.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae NCTC 13129]
gi|419860721|ref|ZP_14383362.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|38199999|emb|CAE49668.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae]
gi|387983115|gb|EIK56614.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 486
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 298 RVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 340
>gi|340354820|ref|ZP_08677518.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
gi|339623072|gb|EGQ27581.1| 30S ribosomal protein S1 [Sporosarcina newyorkensis 2681]
Length = 406
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 124/228 (54%), Gaps = 15/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G V G V + + V+I A +P E H+E+A + +E +
Sbjct: 40 GDHVTGIVTKVEEKSVTVEIAGAPFDGVIPISELSS---LHIEKAADAVEVGDELKLAIT 96
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD+ VLS R + E AW+ ++ +++ +V KGG+V ++ G+RGF+P S
Sbjct: 97 KVEDDAYVLSKRQVDAENAWDSLKEQFENGEIIETEVKDVVKGGLVVDL-GVRGFIPASL 155
Query: 219 ISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNR--------KAMADSQAQLGIGSVV 268
+ + E+ G+ + K VE+D+E++RL+LS+R K ++ + + G V+
Sbjct: 156 VEDHFVESFEDYKGRTMTFKIVEMDQEKNRLILSHRAVVQEQNDKKKEEALSSIQEGDVL 215
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ + +GAF+DIGG++GL+H+SQISH + ++ VL+ GD +KV
Sbjct: 216 DGTVQRIASFGAFVDIGGVDGLVHISQISHGHIESVSDVLKEGDEIKV 263
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
+ S E+++ + T+VK V G +VD+ + ++P H ++ E+
Sbjct: 116 WDSLKEQFENGEIIETEVKDVV----KGGLVVDLGVR--GFIPASLVEDHFVESFED--- 166
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGG 202
G F I+ ++ + L+LS R + Q + E E V+ G V G
Sbjct: 167 YKGRTMTFKIVEMDQEKNRLILSHRAVVQEQNDKKKEEALSSIQEGDVLDGTVQRIASFG 226
Query: 203 VVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
++ G+ G V SQIS +S ++ L G ++ ++ + VD + R+ LS + +
Sbjct: 227 AFVDIGGVDGLVHISQISHGHIESVSDVLKEGDEIKVRVLSVDRDAERVSLSIKDTLPGP 286
Query: 259 QAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDT 313
+ IGSV+ GTV+ L YGAF++I G+ GL+H+S+I+H + VL+ G T
Sbjct: 287 WENVAEKAPIGSVLEGTVKRLVAYGAFVEIFPGVEGLVHISRIAHTHIGTPHEVLEEGQT 346
Query: 314 LKV 316
++V
Sbjct: 347 VQV 349
>gi|239917616|ref|YP_002957174.1| 30S ribosomal protein S1 [Micrococcus luteus NCTC 2665]
gi|239838823|gb|ACS30620.1| SSU ribosomal protein S1P [Micrococcus luteus NCTC 2665]
Length = 485
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D L+DI K+ +P++E I +E V E
Sbjct: 30 KY-FND--GDLVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPDEVVAVGDTVE 86
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
V+ E++ + L+LS + QYE AW +++ ED VV+G V+ KGG++ ++ GLR
Sbjct: 87 ALVLTKEDK-EGRLILSKKRAQYERAWGDIEKIKEEDGVVEGTVIEVVKGGLILDI-GLR 144
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+ L K +E+D+ ++ +VLS R + +Q++
Sbjct: 145 GFLPASLVEMRRVRDLAPYIGQKLEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSNFLHK 204
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V GTV S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 LEKGQVRNGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 259
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 109/235 (46%), Gaps = 35/235 (14%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 125 VEGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQKLEAKIIELDKNR 179
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V G V G ++ G+
Sbjct: 180 NNVVLSRR------AW--LEQTQSEVRSNFLHKLEKGQVRNGTVSSIVNFGAFVDLGGVD 231
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----- 262
G V S++S K +G+++ ++ +EVD ++ R+ LS KA + QL
Sbjct: 232 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLEVDMDRERVSLS-LKATQEDPWQLFARTH 290
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ + V+ D L V
Sbjct: 291 ALGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELASRHIDTAEQVVSVNDELFV 345
>gi|159038909|ref|YP_001538162.1| 30S ribosomal protein S1 [Salinispora arenicola CNS-205]
gi|157917744|gb|ABV99171.1| RNA binding S1 domain protein [Salinispora arenicola CNS-205]
Length = 493
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIQQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVEIPEQVVQVGSEVMV 349
>gi|229492760|ref|ZP_04386561.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
gi|453068500|ref|ZP_21971778.1| 30S ribosomal protein S1 [Rhodococcus qingshengii BKS 20-40]
gi|229320419|gb|EEN86239.1| 30S ribosomal protein S1 [Rhodococcus erythropolis SK121]
gi|452765989|gb|EME24242.1| 30S ribosomal protein S1 [Rhodococcus qingshengii BKS 20-40]
Length = 495
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 131/230 (56%), Gaps = 20/230 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 18 SAEDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 74
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 75 DPNEVVSV--GDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIE 132
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWL 191
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 192 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGD 342
>gi|226185916|dbj|BAH34020.1| probable 30S ribosomal protein S1 [Rhodococcus erythropolis PR4]
Length = 495
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 20/228 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 20 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G E +++ + + + L+LS + QYE AW +L+ +D VKG V+
Sbjct: 77 NEVVSV--GDAVEALVLTKEDKEGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 194 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 108/223 (48%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G ++ ++ ++VD ++ R+ LS + D Q IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGTEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVGVGD 342
>gi|345014360|ref|YP_004816714.1| RNA binding S1 domain-containing protein [Streptomyces
violaceusniger Tu 4113]
gi|344040709|gb|AEM86434.1| RNA binding S1 domain protein [Streptomyces violaceusniger Tu 4113]
Length = 504
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 22/264 (8%)
Query: 69 ERCRTAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
E RT P V+ + E F +A++ KY FN G V G + D L+DI K+
Sbjct: 6 EATRTTPQVAVNDIGSEEAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKT 62
Query: 124 SAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+P++E I H + E + G + E +++ + + + L+LS + QYE AW
Sbjct: 63 EGVIPSRELSIKHDVDPNEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIE 120
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEV 240
+++ ED +V G V+ KGG++ ++ GLRGF+P S + + + +GK+L K +E+
Sbjct: 121 KIKEEDGIVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIEL 179
Query: 241 DEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
D+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+H
Sbjct: 180 DKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVH 239
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
VS++S + + V++ G + V
Sbjct: 240 VSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|302546255|ref|ZP_07298597.1| ribosomal protein S1 [Streptomyces hygroscopicus ATCC 53653]
gi|302463873|gb|EFL26966.1| ribosomal protein S1 [Streptomyces himastatinicus ATCC 53653]
Length = 502
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 22/264 (8%)
Query: 69 ERCRTAPMEGVSF--TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
E RT P V+ + E F +A++ KY FN G V G + D L+DI K+
Sbjct: 6 EATRTTPQVAVNDIGSEEAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKT 62
Query: 124 SAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+P++E I H + E + G + E +++ + + + L+LS + QYE AW
Sbjct: 63 EGVIPSRELSIKHDVDPNEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIE 120
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEV 240
+++ ED +V G V+ KGG++ ++ GLRGF+P S + + + +GK+L K +E+
Sbjct: 121 KIKEEDGIVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIEL 179
Query: 241 DEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
D+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+H
Sbjct: 180 DKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVH 239
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
VS++S + + V++ G + V
Sbjct: 240 VSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|422554450|ref|ZP_16630222.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
gi|314987702|gb|EFT31793.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA2]
Length = 498
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 136/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ + +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTESVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|374990744|ref|YP_004966239.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
gi|297161396|gb|ADI11108.1| 30S ribosomal protein S1 [Streptomyces bingchenggensis BCW-1]
Length = 500
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 22/264 (8%)
Query: 69 ERCRTAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
E RT P V+ + E F +A++ KY FN G V G + D L+DI K+
Sbjct: 6 EATRTTPQVAVNDIGSEEAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKT 62
Query: 124 SAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+P++E I H + E + G + E +++ + + + L+LS + QYE AW
Sbjct: 63 EGVIPSRELSIKHDVDPNEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIE 120
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEV 240
+++ ED +V G V+ KGG++ ++ GLRGF+P S + + + +GK+L K +E+
Sbjct: 121 KIKEEDGIVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIEL 179
Query: 241 DEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
D+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+H
Sbjct: 180 DKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVH 239
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
VS++S + + V++ G + V
Sbjct: 240 VSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|433462997|ref|ZP_20420565.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
gi|432188134|gb|ELK45352.1| 30S ribosomal protein S1 [Halobacillus sp. BAB-2008]
Length = 380
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 121/227 (53%), Gaps = 14/227 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V +++ LVD+ K +P E HVE+A +E + +
Sbjct: 17 GDIVTGKVVKIEDKQVLVDVGYKVEGIVPISELSSL---HVEKASDAVSEGDELTLQVKK 73
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
DD +VLS R + + AW+ + + +V KGG+V ++ GLRGF+P S +
Sbjct: 74 VEDDEIVLSKRAVDADKAWQDLEAKFESGEIFEAEVKDVVKGGLVVDI-GLRGFIPASLV 132
Query: 220 SSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVI 269
+ E+ G+ L LK VE+D EQ+R++LS+R + + ++ L G V+
Sbjct: 133 ETYYVEDFEDYKGRTLSLKVVELDREQNRVILSHRAVVEEEESVKKQEVLQSLEEGQVIE 192
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+++GGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 193 GTVQRLTDFGAFVNLGGIDGLVHISQLSHQHVEKASDVVEEGQAVKV 239
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 117/234 (50%), Gaps = 25/234 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGLR--GFIP---ASLVETYYVEDFEDYKGRTLSLK 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E + ++ LQS E V++G V G + G+
Sbjct: 152 VVELDREQNRVILSHRAVVEEEESVKKQEVLQSLEEGQVIEGTVQRLTDFGAFVNLGGID 211
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLG 263
G V SQ+S + A +++ G+ + +K + VD + R+ LS + D Q+++
Sbjct: 212 GLVHISQLSHQHVEKASDVVEEGQAVKVKVLSVDRDNERISLSLKATQPGPWHDIQSKVS 271
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTV+ L +GAF+++ G+ GL+H+SQIS+ + VL G ++V
Sbjct: 272 SGDVLEGTVRRLVSFGAFVEVFPGVEGLVHISQISNRHIGTPDEVLDEGQQVEV 325
>gi|375293001|ref|YP_005127540.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|376293166|ref|YP_005164840.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
gi|371582672|gb|AEX46338.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae INCA 402]
gi|372110489|gb|AEX76549.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC02]
Length = 513
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 43 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 99
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 100 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 157
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 158 VVKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWL 216
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 217 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 276
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 277 VTVGDEVTV 285
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 151 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 205
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 206 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 264
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 265 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 324
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 325 RVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 367
>gi|282854237|ref|ZP_06263574.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
gi|386071678|ref|YP_005986574.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
gi|422390898|ref|ZP_16470993.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
gi|422459760|ref|ZP_16536408.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
gi|422464648|ref|ZP_16541255.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
gi|422466302|ref|ZP_16542878.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
gi|422470228|ref|ZP_16546749.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
gi|422564991|ref|ZP_16640642.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
gi|422576182|ref|ZP_16651720.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
gi|282583690|gb|EFB89070.1| 30S ribosomal protein S1 [Propionibacterium acnes J139]
gi|314923224|gb|EFS87055.1| 30S ribosomal protein S1 [Propionibacterium acnes HL001PA1]
gi|314966991|gb|EFT11090.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA2]
gi|314980945|gb|EFT25039.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA3]
gi|315091676|gb|EFT63652.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA4]
gi|315093089|gb|EFT65065.1| 30S ribosomal protein S1 [Propionibacterium acnes HL060PA1]
gi|315103138|gb|EFT75114.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA2]
gi|327327811|gb|EGE69587.1| ribosomal protein S1 [Propionibacterium acnes HL103PA1]
gi|353456044|gb|AER06563.1| 30S ribosomal protein S1 [Propionibacterium acnes ATCC 11828]
Length = 498
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|312143877|ref|YP_003995323.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
hydrogeniformans]
gi|311904528|gb|ADQ14969.1| hydroxymethylbutenyl pyrophosphate reductase [Halanaerobium
hydrogeniformans]
Length = 768
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/227 (31%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G KV+GTV ++ G VD+ K+ ++P + ++ E + K E VI+
Sbjct: 386 GQKVEGTVVEINDNGVYVDVNYKTDGFIPLRHLSHSPVEDPREV-VEMDQKIEVVILTLE 444
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + +++LS + YE AWE+ + D +++ +V KGG+V V G+RGF+P S +
Sbjct: 445 DDEGNMILSKKQADYEQAWEKIVEAHENDEIIEAEVTKEVKGGLVVNV-GVRGFIPASHV 503
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + + +G+ L LK +EV+ + + +VLS +K + +A L G V
Sbjct: 504 AIGYVDDLSDYVGETLRLKVIEVERDNNNVVLSAKKVLEKERAAQKEETLEALEEGQTVS 563
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V L +GAFID+GGI GLLH+S++S R+ + VL G+ ++V
Sbjct: 564 GKVTKLVDFGAFIDLGGIEGLLHISEMSWGRIESPSEVLSEGEEVEV 610
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 88/163 (53%), Gaps = 12/163 (7%)
Query: 162 DDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++++VLS + +++ E A ++ L++ E V GKV G ++ G+ G + S+
Sbjct: 530 NNNVVLSAKKVLEKERAAQKEETLEALEEGQTVSGKVTKLVDFGAFIDLGGIEGLLHISE 589
Query: 219 ISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVVIG 270
+S +S +E L G+++ +K + V++E R+ L ++ + D + G VV G
Sbjct: 590 MSWGRIESPSEVLSEGEEVEVKVLGVNKEDERISLGLKQLLPDPWEEFAEKHYEGEVVEG 649
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
+ + +GAF+++ GI GL+H+SQ+SH V V+ GD
Sbjct: 650 KITKIVDFGAFMEVEKGIEGLIHISQLSHRHVKTADEVVSVGD 692
>gi|336234889|ref|YP_004587505.1| RNA binding S1 domain-containing protein [Geobacillus
thermoglucosidasius C56-YS93]
gi|335361744|gb|AEH47424.1| RNA binding S1 domain protein [Geobacillus thermoglucosidasius
C56-YS93]
Length = 387
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 51/250 (20%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQE-ACIH----------------KIKHV 140
+G V+G V +++ LVDI +K S +P E + +H K+K V
Sbjct: 14 VGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAKVKKV 73
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE----RCRQLQSEDVVVKGKVV 196
EE GENE D L+LS + + E AWE R ++ +V+VK V
Sbjct: 74 EE--------------GENEEDGLLILSKKAVDAERAWEELERRFASGETFEVIVKDIV- 118
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG+VA+V G+RGF+P S + + + GK L +K VE+D E++R++LS+R
Sbjct: 119 ---KGGLVADV-GVRGFIPASLVEPHYVEDFSDYKGKTLAVKVVELDREKNRVILSHRAV 174
Query: 255 MADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ + Q ++L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA +
Sbjct: 175 VEEEQERQRKEALSRLETGQVLEGIVRRITDFGVFVDVGGFDGLVHISQLSHTRVAHPSD 234
Query: 307 VLQPGDTLKV 316
V+Q G+T+KV
Sbjct: 235 VVQEGETVKV 244
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A G+ + +K + VDEE R+ LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENGRVSLSIKEALPS 266
Query: 258 SQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
++ G +V G V+ L P+GAF++I GI GL+H+SQIS R+ VL+ G+
Sbjct: 267 PWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGE 326
Query: 313 TLK 315
+K
Sbjct: 327 EVK 329
>gi|336114247|ref|YP_004569014.1| RNA binding S1 domain-containing protein [Bacillus coagulans 2-6]
gi|335367677|gb|AEH53628.1| RNA binding S1 domain protein [Bacillus coagulans 2-6]
Length = 378
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 125/229 (54%), Gaps = 15/229 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
+G KVK +V + + LV I +K +P E H+E A +E ++
Sbjct: 15 VGDKVKASVVKVEEKQVLVSIEGSKVDGIIPISELSN---LHIETASDAVKEGDELNLVV 71
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
+D+++LS R E AW+ ++ +++ +V KGG+V ++ G+RGFVP S
Sbjct: 72 TKVEEDAVILSKRKYDAEKAWDELKEKFENQEIIEAEVNEVVKGGLVVDL-GVRGFVPAS 130
Query: 218 QISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA--------DSQAQLGIGSV 267
+ + + GK LP VE+DE+++RL+LS+R + D L G V
Sbjct: 131 LVEDHFVEDFSDYKGKTLPFLIVELDEDKNRLILSHRAVVEKEKEEKRQDILDHLEAGQV 190
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GTVQ L +GAF+DIGGI+GL+H+SQ++H+RV + V++ G+ +KV
Sbjct: 191 LEGTVQRLTNFGAFVDIGGIDGLVHISQLAHERVETPSDVVKEGEKVKV 239
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 98/183 (53%), Gaps = 26/183 (14%)
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDV--------VVKGKVVGANKGGVV 204
F+I+ +E + L+LS R + E+ ++ + +D+ V++G V G
Sbjct: 150 FLIVELDEDKNRLILSHRAV-----VEKEKEEKRQDILDHLEAGQVLEGTVQRLTNFGAF 204
Query: 205 AEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA---- 256
++ G+ G V SQ++ + T +++ G+ + +K + VD + R+ LS + +
Sbjct: 205 VDIGGIDGLVHISQLAHERVETPSDVVKEGEKVKVKVLSVDRDNGRISLSIKDTLPGPWE 264
Query: 257 --DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDT 313
+ +AQ G +V+ GTV+ L +GAF+++ G+ GL+H+SQISH V+ VL+ G
Sbjct: 265 GIEQKAQKG--TVLTGTVKRLVSFGAFVEVFPGVEGLVHISQISHKHVSTPHEVLREGQE 322
Query: 314 LKV 316
++V
Sbjct: 323 VQV 325
>gi|395204361|ref|ZP_10395301.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
gi|422440242|ref|ZP_16517056.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
gi|422471366|ref|ZP_16547866.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
gi|422572458|ref|ZP_16648028.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
gi|313837427|gb|EFS75141.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA2]
gi|314929361|gb|EFS93192.1| 30S ribosomal protein S1 [Propionibacterium acnes HL044PA1]
gi|314971634|gb|EFT15732.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA3]
gi|328907023|gb|EGG26789.1| 30S ribosomal protein S1 [Propionibacterium humerusii P08]
Length = 498
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/246 (32%), Positives = 136/246 (55%), Gaps = 23/246 (9%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 35 STEAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDV 91
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 92 DPFEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIE 149
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 150 VVKGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWL 208
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADI 304
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 209 EQTQSEVRQSFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 268
Query: 305 ATVLQP 310
V QP
Sbjct: 269 VEVGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQSFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|312110427|ref|YP_003988743.1| RNA binding S1 domain-containing protein [Geobacillus sp. Y4.1MC1]
gi|311215528|gb|ADP74132.1| RNA binding S1 domain protein [Geobacillus sp. Y4.1MC1]
Length = 387
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 86/250 (34%), Positives = 135/250 (54%), Gaps = 51/250 (20%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQE-ACIH----------------KIKHV 140
+G V+G V +++ LVDI +K S +P E + +H K+K V
Sbjct: 14 VGDIVRGKVAKLEDKQVLVDIEGSKQSGIIPISELSSLHIDKTSDAVSVGDEVTAKVKKV 73
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE----RCRQLQSEDVVVKGKVV 196
EE GENE D L+LS + + E AWE R ++ +V+VK V
Sbjct: 74 EE--------------GENEEDGLLILSKKAVDAERAWEELERRFASGETFEVIVKDIV- 118
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG+VA+V G+RGF+P S + + + GK L +K VE+D E++R++LS+R
Sbjct: 119 ---KGGLVADV-GVRGFIPASLVEPHYVEDFSDYKGKPLAVKVVELDREKNRVILSHRAV 174
Query: 255 MADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ + Q ++L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA +
Sbjct: 175 VEEEQERQRKEALSRLETGQVLEGIVRRITDFGVFVDVGGFDGLVHISQLSHTRVAHPSD 234
Query: 307 VLQPGDTLKV 316
V+Q G+T+KV
Sbjct: 235 VVQEGETVKV 244
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A G+ + +K + VDEE R+ LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSDVVQEGETVKVKVLSVDEENGRVSLSIKEALPS 266
Query: 258 SQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
++ G +V G V+ L P+GAF++I GI GL+H+SQIS R+ VL+ G+
Sbjct: 267 PWEGIAEKIAPGDIVTGKVKRLVPFGAFVEIFPGIEGLVHISQISTKRIGTPHEVLKEGE 326
Query: 313 TLK 315
+K
Sbjct: 327 EVK 329
>gi|296269456|ref|YP_003652088.1| RNA binding S1 domain-containing protein [Thermobispora bispora DSM
43833]
gi|296092243|gb|ADG88195.1| RNA binding S1 domain protein [Thermobispora bispora DSM 43833]
Length = 480
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 81/248 (32%), Positives = 140/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 77 VDPAEVVKVGDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 196 QTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 255
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 256 EVGQEVTV 263
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 33/236 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V KG V G ++ G+
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQVRKGVVSSIVNFGAFVDLGGVD 235
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 236 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 295
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V +
Sbjct: 296 IGQVVPGRVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDEIFVKI 351
>gi|375290806|ref|YP_005125346.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|376242739|ref|YP_005133591.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|376245637|ref|YP_005135876.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|376248430|ref|YP_005140374.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|376251220|ref|YP_005138101.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|376254226|ref|YP_005142685.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|376257038|ref|YP_005144929.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
gi|376287654|ref|YP_005160220.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|376290348|ref|YP_005162595.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|371580477|gb|AEX44144.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 241]
gi|371584988|gb|AEX48653.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae BH8]
gi|372103744|gb|AEX67341.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae C7 (beta)]
gi|372105981|gb|AEX72043.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae CDCE 8392]
gi|372108267|gb|AEX74328.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC01]
gi|372112724|gb|AEX78783.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC03]
gi|372114998|gb|AEX81056.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae HC04]
gi|372117310|gb|AEX69780.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae PW8]
gi|372119555|gb|AEX83289.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae VA01]
Length = 513
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 43 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 99
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 100 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 157
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 158 VVKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWL 216
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 217 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 276
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 277 VTVGDEVTV 285
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 151 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 205
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 206 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 264
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 265 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 324
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 325 RVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 367
>gi|376284650|ref|YP_005157860.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
gi|371578165|gb|AEX41833.1| 30S ribosomal protein S1 [Corynebacterium diphtheriae 31A]
Length = 506
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 36 TAEDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 92
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 93 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 150
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 151 VVKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWL 209
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 210 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 269
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 270 VTVGDEVTV 278
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 144 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 198
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 199 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 257
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 258 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 317
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 318 RVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 360
>gi|157692789|ref|YP_001487251.1| 30S ribosomal protein S1 [Bacillus pumilus SAFR-032]
gi|157681547|gb|ABV62691.1| ribosomal protein S1 [Bacillus pumilus SAFR-032]
Length = 383
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 17/231 (7%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K +P E HVE+A V +E +
Sbjct: 14 EVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSS---LHVEKASDVVKDGDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
DD+L+LS R + + AWE R+ ++++V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLERKFETKEVF-EAEVKDVVKGGLVVDI-GVRGFIP 128
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + + + + GK L L VE+D E++R++LS+R + Q +L +G
Sbjct: 129 ASLVEAHYVEDFSDYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVG 188
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
SV+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G ++V
Sbjct: 189 SVIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAHVEKPSDVVEEGQEVQV 239
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G V
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHYVEDFSDYKGKTLSLV 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ +V V+ GKV G ++ G+
Sbjct: 152 VVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISS------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEE--GQEVQVKVLAVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQISH + VL+ G T+KV
Sbjct: 270 VKQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKV 325
>gi|422437824|ref|ZP_16514668.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
gi|422524653|ref|ZP_16600662.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
gi|422532624|ref|ZP_16608570.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
gi|313791764|gb|EFS39875.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA1]
gi|315077524|gb|EFT49582.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA2]
gi|327452888|gb|EGE99542.1| 30S ribosomal protein S1 [Propionibacterium acnes HL092PA1]
Length = 498
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|50842265|ref|YP_055492.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
gi|289426251|ref|ZP_06427997.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
gi|289427839|ref|ZP_06429545.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
gi|295130353|ref|YP_003581016.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
gi|335052226|ref|ZP_08545118.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
gi|335053985|ref|ZP_08546810.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
gi|342212943|ref|ZP_08705668.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
gi|354606752|ref|ZP_09024722.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
gi|365962490|ref|YP_004944056.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964734|ref|YP_004946299.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973670|ref|YP_004955229.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
gi|386023737|ref|YP_005942040.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
gi|407935191|ref|YP_006850833.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
gi|417929618|ref|ZP_12573002.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
gi|419420987|ref|ZP_13961215.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
gi|422385153|ref|ZP_16465288.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
gi|422388231|ref|ZP_16468334.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
gi|422393353|ref|ZP_16473406.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
gi|422396184|ref|ZP_16476215.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
gi|422424231|ref|ZP_16501181.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
gi|422428339|ref|ZP_16505250.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
gi|422431256|ref|ZP_16508135.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
gi|422432942|ref|ZP_16509810.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
gi|422435485|ref|ZP_16512342.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
gi|422443300|ref|ZP_16520098.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
gi|422445462|ref|ZP_16522209.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
gi|422448818|ref|ZP_16525543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
gi|422454691|ref|ZP_16531371.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
gi|422461630|ref|ZP_16538254.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
gi|422474499|ref|ZP_16550963.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
gi|422477823|ref|ZP_16554246.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
gi|422480378|ref|ZP_16556781.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
gi|422482871|ref|ZP_16559260.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
gi|422485652|ref|ZP_16562014.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
gi|422488901|ref|ZP_16565230.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
gi|422490994|ref|ZP_16567309.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
gi|422493049|ref|ZP_16569349.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
gi|422496028|ref|ZP_16572315.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
gi|422498768|ref|ZP_16575040.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
gi|422501060|ref|ZP_16577314.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
gi|422502579|ref|ZP_16578824.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
gi|422506528|ref|ZP_16582751.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
gi|422507862|ref|ZP_16584043.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
gi|422510900|ref|ZP_16587046.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
gi|422513122|ref|ZP_16589245.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
gi|422515996|ref|ZP_16592105.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
gi|422521619|ref|ZP_16597649.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
gi|422527010|ref|ZP_16603000.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
gi|422529451|ref|ZP_16605417.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
gi|422534099|ref|ZP_16610023.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
gi|422537621|ref|ZP_16613509.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
gi|422539707|ref|ZP_16615580.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
gi|422542629|ref|ZP_16618479.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
gi|422545683|ref|ZP_16621513.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
gi|422547568|ref|ZP_16623384.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
gi|422549423|ref|ZP_16625223.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
gi|422552498|ref|ZP_16628289.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
gi|422556547|ref|ZP_16632301.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
gi|422561230|ref|ZP_16636917.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
gi|422563322|ref|ZP_16638999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
gi|422568915|ref|ZP_16644533.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
gi|422569692|ref|ZP_16645299.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
gi|422578941|ref|ZP_16654465.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
gi|50839867|gb|AAT82534.1| 30S ribosomal protein S1 [Propionibacterium acnes KPA171202]
gi|289153416|gb|EFD02131.1| 30S ribosomal protein S1 [Propionibacterium acnes SK187]
gi|289158971|gb|EFD07169.1| 30S ribosomal protein S1 [Propionibacterium acnes J165]
gi|291375457|gb|ADD99311.1| 30S ribosomal protein S1 [Propionibacterium acnes SK137]
gi|313764712|gb|EFS36076.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA1]
gi|313802151|gb|EFS43383.1| 30S ribosomal protein S1 [Propionibacterium acnes HL110PA2]
gi|313807266|gb|EFS45753.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA2]
gi|313809772|gb|EFS47493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA1]
gi|313813186|gb|EFS50900.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA1]
gi|313815779|gb|EFS53493.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA1]
gi|313818313|gb|EFS56027.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA2]
gi|313820074|gb|EFS57788.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA1]
gi|313823117|gb|EFS60831.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA2]
gi|313825606|gb|EFS63320.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA1]
gi|313827848|gb|EFS65562.1| 30S ribosomal protein S1 [Propionibacterium acnes HL063PA2]
gi|313830682|gb|EFS68396.1| 30S ribosomal protein S1 [Propionibacterium acnes HL007PA1]
gi|313833902|gb|EFS71616.1| 30S ribosomal protein S1 [Propionibacterium acnes HL056PA1]
gi|313838482|gb|EFS76196.1| 30S ribosomal protein S1 [Propionibacterium acnes HL086PA1]
gi|314915204|gb|EFS79035.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA4]
gi|314918567|gb|EFS82398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA1]
gi|314919829|gb|EFS83660.1| 30S ribosomal protein S1 [Propionibacterium acnes HL050PA3]
gi|314925498|gb|EFS89329.1| 30S ribosomal protein S1 [Propionibacterium acnes HL036PA3]
gi|314931844|gb|EFS95675.1| 30S ribosomal protein S1 [Propionibacterium acnes HL067PA1]
gi|314956000|gb|EFT00398.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA1]
gi|314958395|gb|EFT02498.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA1]
gi|314960251|gb|EFT04353.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA2]
gi|314963061|gb|EFT07161.1| 30S ribosomal protein S1 [Propionibacterium acnes HL082PA1]
gi|314968106|gb|EFT12205.1| 30S ribosomal protein S1 [Propionibacterium acnes HL037PA1]
gi|314973683|gb|EFT17779.1| 30S ribosomal protein S1 [Propionibacterium acnes HL053PA1]
gi|314976278|gb|EFT20373.1| 30S ribosomal protein S1 [Propionibacterium acnes HL045PA1]
gi|314978238|gb|EFT22332.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA2]
gi|314983513|gb|EFT27605.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA1]
gi|314990181|gb|EFT34272.1| 30S ribosomal protein S1 [Propionibacterium acnes HL005PA3]
gi|315080309|gb|EFT52285.1| 30S ribosomal protein S1 [Propionibacterium acnes HL078PA1]
gi|315084567|gb|EFT56543.1| 30S ribosomal protein S1 [Propionibacterium acnes HL027PA2]
gi|315085905|gb|EFT57881.1| 30S ribosomal protein S1 [Propionibacterium acnes HL002PA3]
gi|315088677|gb|EFT60653.1| 30S ribosomal protein S1 [Propionibacterium acnes HL072PA1]
gi|315096304|gb|EFT68280.1| 30S ribosomal protein S1 [Propionibacterium acnes HL038PA1]
gi|315098286|gb|EFT70262.1| 30S ribosomal protein S1 [Propionibacterium acnes HL059PA2]
gi|315101023|gb|EFT72999.1| 30S ribosomal protein S1 [Propionibacterium acnes HL046PA1]
gi|327325939|gb|EGE67729.1| ribosomal protein S1 [Propionibacterium acnes HL096PA2]
gi|327330637|gb|EGE72383.1| ribosomal protein S1 [Propionibacterium acnes HL097PA1]
gi|327332188|gb|EGE73925.1| ribosomal protein S1 [Propionibacterium acnes HL096PA3]
gi|327442810|gb|EGE89464.1| 30S ribosomal protein S1 [Propionibacterium acnes HL013PA2]
gi|327446180|gb|EGE92834.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA2]
gi|327447838|gb|EGE94492.1| 30S ribosomal protein S1 [Propionibacterium acnes HL043PA1]
gi|327451032|gb|EGE97686.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA3]
gi|327453616|gb|EGF00271.1| 30S ribosomal protein S1 [Propionibacterium acnes HL083PA2]
gi|328753065|gb|EGF66681.1| 30S ribosomal protein S1 [Propionibacterium acnes HL087PA1]
gi|328753719|gb|EGF67335.1| 30S ribosomal protein S1 [Propionibacterium acnes HL020PA1]
gi|328759190|gb|EGF72806.1| 30S ribosomal protein S1 [Propionibacterium acnes HL025PA2]
gi|328760564|gb|EGF74132.1| ribosomal protein S1 [Propionibacterium acnes HL099PA1]
gi|332675193|gb|AEE72009.1| 30S ribosomal protein S1 [Propionibacterium acnes 266]
gi|333764312|gb|EGL41709.1| 30S ribosomal protein S1 [Propionibacterium sp. 409-HC1]
gi|333765766|gb|EGL43098.1| 30S ribosomal protein S1 [Propionibacterium sp. 434-HC2]
gi|340768487|gb|EGR91012.1| 30S ribosomal protein S1 [Propionibacterium sp. CC003-HC2]
gi|340773741|gb|EGR96233.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182]
gi|353556867|gb|EHC26236.1| 30S ribosomal protein S1 [Propionibacterium sp. 5_U_42AFAA]
gi|365739171|gb|AEW83373.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741415|gb|AEW81109.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn17]
gi|365743669|gb|AEW78866.1| 30S ribosomal protein S1 [Propionibacterium acnes TypeIA2 P.acn33]
gi|379977478|gb|EIA10803.1| 30S ribosomal protein S1 [Propionibacterium acnes PRP-38]
gi|407903772|gb|AFU40602.1| 30S ribosomal protein S1 [Propionibacterium acnes C1]
gi|456739550|gb|EMF64089.1| 30S ribosomal protein S1 [Propionibacterium acnes FZ1/2/0]
Length = 498
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|226312030|ref|YP_002771924.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
gi|226094978|dbj|BAH43420.1| 30S ribosomal protein S1 homolog [Brevibacillus brevis NBRC 100599]
Length = 389
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 127/228 (55%), Gaps = 12/228 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G VK TV +++ ALVD+ K +P E ++ V + + G E +I
Sbjct: 16 VGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDV-VAVGDTFEVKVIKL 74
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N+ + LV+S + + E +W Q +++ V KGG+V +V G+RGF+P S
Sbjct: 75 NDEKEELVVSKKAVAMESSWSDLEQKMQAGEIIEAAVKEVVKGGLVVDV-GVRGFIPASM 133
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS---QAQ-----LGIGSVV 268
+ + + GK L LK VE+D+E+++++LS++ + D Q Q + +G V+
Sbjct: 134 VERHFVEDFSDYKGKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVL 193
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ + +G F+DIGG++GL+HVS+++ +RV + V++ GD +KV
Sbjct: 194 EGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDKPSDVVKEGDKVKV 241
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
V++G V GV ++ G+ G V S+++ K + G + +K +++D E
Sbjct: 192 VLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDKPSDVVKEGDKVKVKVLKIDRENE 251
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS ++ A A + GS++ GTV+ L +GAFI++ GI GL+H+SQI++ R
Sbjct: 252 RIGLSIKETQAGPWASVAEDFKAGSILNGTVKRLVSFGAFIELAPGIEGLVHISQIANRR 311
Query: 301 VADIATVLQPGDTLKV 316
V + VL+ G ++V
Sbjct: 312 VNTPSEVLKEGQEVQV 327
>gi|269956314|ref|YP_003326103.1| RNA binding S1 domain-containing protein [Xylanimonas
cellulosilytica DSM 15894]
gi|269304995|gb|ACZ30545.1| RNA binding S1 domain protein [Xylanimonas cellulosilytica DSM
15894]
Length = 490
Score = 114 bits (285), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 136/247 (55%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T E+ +A++ N G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 19 TAEDLLAAIDATIKNFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDV 75
Query: 142 EAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+ V L + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 76 DPSEVVSLGDVVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 135
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 136 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQ 194
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 195 TQSEVRSTFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 254
Query: 310 PGDTLKV 316
G + V
Sbjct: 255 VGQEVTV 261
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 105/219 (47%), Gaps = 41/219 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 127 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 181
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 182 NNVVLSRR------AW--LEQTQSEVRSTFLQTLQKGQV----RPGVVSSIVNFGAFVDL 229
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFA 289
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 328
>gi|194016705|ref|ZP_03055318.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
7061]
gi|194011311|gb|EDW20880.1| putative 30S ribosomal protein S1 homolog [Bacillus pumilus ATCC
7061]
Length = 383
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ VDI K +P E HVE+A V +E +
Sbjct: 14 EVGDVVKGIVSKVEDKHVNVDIVNVKQPGIIPISELSS---LHVEKASDVVKDGDELELK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGS 266
S + + + + GK L L VE+D E++R++LS+R + Q +L +GS
Sbjct: 130 SLVEAHYVEDFSDYKGKTLSLVVVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G ++V
Sbjct: 190 VIDGKVQRLTDFGAFVDIGGIDGLVHISQLSHAHVEKPSDVVEEGQEVQV 239
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + +VE+ G V
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHYVEDFSDYKGKTLSLV 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ +V V+ GKV G ++ G+
Sbjct: 152 VVELDREKNRVILSHRAVVEQEQLDKKQDFLQKLEVGSVIDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISS------KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHAHVEKPSDVVEE--GQEVQVKVLAVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQISH + VL+ G T+KV
Sbjct: 270 VKQGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISHKHIGTPHEVLEEGQTVKV 325
>gi|25028013|ref|NP_738067.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|259506404|ref|ZP_05749306.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
gi|23493296|dbj|BAC18267.1| putative 30S ribosomal protein S1 [Corynebacterium efficiens
YS-314]
gi|259166011|gb|EEW50565.1| 30S ribosomal protein S1 [Corynebacterium efficiens YS-314]
Length = 485
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 140/249 (56%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 16 SAEDFLAAIDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVQV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKNR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|350569650|ref|ZP_08938046.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
gi|348660468|gb|EGY77178.1| 30S ribosomal protein S1 [Propionibacterium avidum ATCC 25577]
Length = 498
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|422452099|ref|ZP_16528800.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
gi|315108213|gb|EFT80189.1| 30S ribosomal protein S1 [Propionibacterium acnes HL030PA2]
Length = 498
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|417931599|ref|ZP_12574964.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
gi|340775542|gb|EGR97595.1| 30S ribosomal protein S1 [Propionibacterium acnes SK182B-JCVI]
Length = 498
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 80/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLSRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|227488118|ref|ZP_03918434.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541514|ref|ZP_03971563.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
gi|227091980|gb|EEI27292.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227182670|gb|EEI63642.1| 30S ribosomal protein S1 [Corynebacterium glucuronolyticum ATCC
51866]
Length = 482
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GTV DN L+DI K+ +P++E I KH
Sbjct: 18 EDFLAAVDETIKY-FND--GDIVEGTVVKVDNDEVLLDIGYKTEGVIPSRELSI---KHD 71
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ V + ++ +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 72 VDPDDVVEVGDQIDALVLTKEDKEGRLLLSKKRAQYERAWGTIEELKEKDEPVTGTVIEV 131
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + E +G+++ K +E+D+ ++ +VLS R +
Sbjct: 132 VKGGLILDI-GLRGFLPASLVEMRRVRDLEPYIGQEIEAKIIELDKNRNNVVLSRRAWLE 190
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 191 QTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 250
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 251 SVGDEVTV 258
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLEPYIGQEIEAKIIELDKNR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVSVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|331084456|ref|ZP_08333558.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
6_1_63FAA]
gi|330401319|gb|EGG80906.1| hypothetical protein HMPREF0992_02482 [Lachnospiraceae bacterium
6_1_63FAA]
Length = 233
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 97/151 (64%), Gaps = 11/151 (7%)
Query: 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDL 233
L W++ Q++ + + V G KGGV+A VEG+R F+P S+++ E+ L K +
Sbjct: 31 LIWDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKTI 90
Query: 234 PLKFVEVDEEQSRLVLSNR---KAMADSQAQ-----LGIGSVVIGTVQSLKPYGAFIDIG 285
++ EVDE+++RLVLS + K AD++ + + +GS+V GTV+SL+ YGAFID+G
Sbjct: 91 TVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTYGAFIDLG 150
Query: 286 -GINGLLHVSQISHDRVADIATVLQPGDTLK 315
GI+GL+HVSQIS R+ VL GDT+K
Sbjct: 151 DGISGLVHVSQISEKRIKSPKAVLSIGDTVK 181
>gi|117928296|ref|YP_872847.1| 30S ribosomal protein S1 [Acidothermus cellulolyticus 11B]
gi|117648759|gb|ABK52861.1| SSU ribosomal protein S1P [Acidothermus cellulolyticus 11B]
Length = 515
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 136/244 (55%), Gaps = 20/244 (8%)
Query: 82 TLEEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ ++F +A++K Y FN G V+GTV D L+DI K+ +P++E I H +
Sbjct: 27 STDDFIAAIDKTIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 83
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + D L+LS + QYE AW Q++ D VV G V+
Sbjct: 84 DPHEVVKV--GDRIEALVLQKEDKDGRLILSKKRAQYERAWGTIEQIKEADGVVTGTVIE 141
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 142 VVKGGLILDI-GLRGFLPASLVEMRRVRDLAPYVGRKLEAKIIELDKNRNNVVLSRRAYL 200
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q++ L G + G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 201 EQTQSEVRQTFLTTLKKGQIRNGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 260
Query: 308 LQPG 311
++ G
Sbjct: 261 VEVG 264
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 112/240 (46%), Gaps = 41/240 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 135 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYVGRKLEAKIIELDKNR 189
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R Q QSE + KG++ + GVV+ ++
Sbjct: 190 NNVVLSRRAY--------LEQTQSEVRQTFLTTLKKGQI----RNGVVSSIVNFGAFVDL 237
Query: 208 EGLRGFVPFSQISSK--STAEELLGKDLPL--KFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K E++ +P+ + ++VD ++ R+ LS + D
Sbjct: 238 GGVDGLVHVSELSWKHIDHPSEVVEVGMPVTVEVLDVDLDRERVSLSLKSTQEDPWQLFA 297
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G VV G V L P+GAF+ + GI GL+H+S++S V V+Q GD + V +
Sbjct: 298 RTHSLGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELSDRHVEIPEQVVQVGDEIFVKI 357
>gi|357398732|ref|YP_004910657.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386354772|ref|YP_006053018.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337765141|emb|CCB73850.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|365805280|gb|AEW93496.1| 30S ribosomal protein S1 [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 498
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 143/264 (54%), Gaps = 22/264 (8%)
Query: 69 ERCRTAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
E RT P V+ + E F +A++ KY FN G V G + D L+DI K+
Sbjct: 6 EAPRTTPQVAVNDIGSEEAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKT 62
Query: 124 SAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+P++E I H + E + G + E +++ + + + L+LS + QYE AW
Sbjct: 63 EGVIPSRELSIKHDVDPNEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIE 120
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEV 240
+++ ED +V G V+ KGG++ ++ GLRGF+P S + + + +GK+L K +E+
Sbjct: 121 KIKEEDGIVTGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIEL 179
Query: 241 DEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
D+ ++ +VLS R + +Q++ L G V G V S+ +GAF+D+GG++GL+H
Sbjct: 180 DKNRNNVVLSRRAWLEQTQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVH 239
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
VS++S + + V++ G + V
Sbjct: 240 VSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|1098565|gb|AAA97575.1| ribosomal S1 protein, partial [Homo sapiens]
Length = 352
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 12/165 (7%)
Query: 164 SLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK- 222
S +LS + + AWE + + V KV+ A +GG++ +V G+RGFVP S ++ +
Sbjct: 45 SYLLSKKRLDARKAWENLSFAEGD--TVDAKVINAVRGGLIVDVNGVRGFVPASMVAERF 102
Query: 223 -STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQ 273
S + KD+ + +E+D +RL+LS + A +A +L +G VV GTV
Sbjct: 103 VSDLNQFKNKDIKAQVIEIDPANARLILSRKAVAAQERAAQLAEVFSKLSVGEVVEGTVA 162
Query: 274 SLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L +GAF+D+GG++GL+HVS+ISHDRV + A VL GD + V +
Sbjct: 163 RLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKI 207
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 127/266 (47%), Gaps = 34/266 (12%)
Query: 73 TAPMEGVSFTLE----EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLP 128
T+ EGVS+ L + A E F G V V G +VD+ ++P
Sbjct: 38 TSDKEGVSYLLSKKRLDARKAWENLSFAE--GDTVDAKVINAVRGGLIVDVNG-VRGFVP 94
Query: 129 TQ---EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
E + + + I K + + I + A+ L+LS + + A ER QL
Sbjct: 95 ASMVAERFVSDLNQFKNKDI----KAQVIEI--DPANARLILSRKAVA---AQERAAQLA 145
Query: 186 ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPL 235
S VV+G V G ++ G+ G V S+IS K+ A+ L G + +
Sbjct: 146 EVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDV 205
Query: 236 KFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGL 290
K + +D E+ R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL
Sbjct: 206 KILALDTEKGRISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGL 265
Query: 291 LHVSQISHDRVADIATVLQPGDTLKV 316
+HVSQIS+ R+ + + VL+ GD ++V
Sbjct: 266 VHVSQISNKRIENPSEVLKSGDKVQV 291
>gi|405979804|ref|ZP_11038145.1| 30S ribosomal protein S1 [Actinomyces turicensis ACS-279-V-Col4]
gi|404391179|gb|EJZ86243.1| 30S ribosomal protein S1 [Actinomyces turicensis ACS-279-V-Col4]
Length = 481
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 134/235 (57%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G K
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDKI 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
LG G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LGKGQVRTGNVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 33/230 (14%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVV-----AEVEGLR 211
+++VLS R AW Q QSE + KG+V N +V ++ G+
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLGKGQVRTGNVSSIVNFGAFVDLGGVD 229
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFARTHA 289
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
IG VV G V L P+GAF+ + GI GL+H+S+++ V V++ GD
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPDQVVKVGD 339
>gi|300741419|ref|ZP_07071440.1| ribosomal protein S1 [Rothia dentocariosa M567]
gi|311113502|ref|YP_003984724.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
gi|300380604|gb|EFJ77166.1| ribosomal protein S1 [Rothia dentocariosa M567]
gi|310944996|gb|ADP41290.1| 30S ribosomal protein S1 [Rothia dentocariosa ATCC 17931]
Length = 486
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 135/245 (55%), Gaps = 25/245 (10%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
EEF A++ KY FN G V G V D+ L+DI K+ +P++E I KH
Sbjct: 17 EEFLKAVDETIKY-FND--GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 70
Query: 141 EEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V + +E +++ + + + L+LS + QYE AW +++ D VV G V+
Sbjct: 71 VDPGEVVAVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKENDGVVTGTVIEV 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 131 VKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWLE 189
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIA 305
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 190 QTQSEVRSTFLNQLEKGQVREGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 249
Query: 306 TVLQP 310
V QP
Sbjct: 250 EVGQP 254
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 33/236 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQLEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE V +G V G ++ G+
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRSTFLNQLEKGQVREGVVSSIVNFGAFVDLGGVD 229
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+ + ++ +EVD ++ R+ LS + D
Sbjct: 230 GLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQEDPWQAFARTHA 289
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G +V G V L P+GAF+ + GI GL+H+S+++ V V+ G+ L V +
Sbjct: 290 LGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLAEQVVSVGEELFVKI 345
>gi|257867659|ref|ZP_05647312.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
gi|257873988|ref|ZP_05653641.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
gi|257876567|ref|ZP_05656220.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
gi|325571138|ref|ZP_08146710.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
gi|420263971|ref|ZP_14766606.1| ribosomal protein S1 [Enterococcus sp. C1]
gi|257801742|gb|EEV30645.1| ribosomal protein S1 [Enterococcus casseliflavus EC30]
gi|257808152|gb|EEV36974.1| ribosomal protein S1 [Enterococcus casseliflavus EC10]
gi|257810733|gb|EEV39553.1| ribosomal protein S1 [Enterococcus casseliflavus EC20]
gi|325156223|gb|EGC68409.1| 30S ribosomal protein S1 [Enterococcus casseliflavus ATCC 12755]
gi|394768870|gb|EJF48747.1| ribosomal protein S1 [Enterococcus sp. C1]
Length = 404
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 132/246 (53%), Gaps = 15/246 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEE 142
E +AL+ + ++G VKG V +++ A+V I A +P +E ++ + E
Sbjct: 14 ESMEAALDNFQ-EVKVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTLPVEDINE 72
Query: 143 AGIVPGLKEEFVI--IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
A V + E VI IG+++ + S +LS R + + WE + E +++ V K
Sbjct: 73 AVKVGDVLELVVISAIGKDKENGSYLLSKRRLDAKKVWEDIEKDFQEGKIIEAPVTNVVK 132
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG+V +V G+RGFVP S + A E+ GK L K VE++ ++RL+LS++ +
Sbjct: 133 GGLVVDV-GVRGFVPASMVEDHFVADFEDYKGKTLTFKIVEIEPSENRLILSHKAVVEAE 191
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G V G V L +GAF+D+GGI+GL+HVS+ISH V + VL
Sbjct: 192 KAKQKEALLADLYEGQEVEGKVARLTDFGAFVDLGGIDGLVHVSEISHGHVGKPSDVLSV 251
Query: 311 GDTLKV 316
GDT+ V
Sbjct: 252 GDTVNV 257
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 76/135 (56%), Gaps = 9/135 (6%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSR 246
V+GKV G ++ G+ G V S+IS K + +G + ++ + VD ++ R
Sbjct: 209 VEGKVARLTDFGAFVDLGGIDGLVHVSEISHGHVGKPSDVLSVGDTVNVRILSVDADKER 268
Query: 247 LVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
+ LS + + + + Q +GSV+ GTV+ L +GAF+++ G+ GL+H+SQISH +
Sbjct: 269 VSLSIKDTLPGPWTNIEEQAAVGSVLTGTVKRLTSFGAFVEVFPGVEGLIHISQISHKHI 328
Query: 302 ADIATVLQPGDTLKV 316
A VLQ GD ++V
Sbjct: 329 ATPHEVLQEGDEVQV 343
>gi|418245351|ref|ZP_12871758.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
gi|354510759|gb|EHE83681.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 14067]
Length = 486
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I H +
Sbjct: 16 SAEDFLAAIDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLIIDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKNR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|260589442|ref|ZP_05855355.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
gi|260540187|gb|EEX20756.1| ribosomal protein S1 [Blautia hansenii DSM 20583]
Length = 250
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 97/151 (64%), Gaps = 11/151 (7%)
Query: 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDL 233
L W++ Q++ + + V G KGGV+A VEG+R F+P S+++ E+ L K +
Sbjct: 48 LIWDKLEQMKEDKTEFEVSVEGIVKGGVIAYVEGIRAFIPVSKLALNYVENPEDFLKKTI 107
Query: 234 PLKFVEVDEEQSRLVLSNR---KAMADSQAQ-----LGIGSVVIGTVQSLKPYGAFIDIG 285
++ EVDE+++RLVLS + K AD++ + + +GS+V GTV+SL+ YGAFID+G
Sbjct: 108 TVRVFEVDEQENRLVLSAKEILKEKADAEKRSKIDDIKVGSIVEGTVESLQTYGAFIDLG 167
Query: 286 -GINGLLHVSQISHDRVADIATVLQPGDTLK 315
GI+GL+HVSQIS R+ VL GDT+K
Sbjct: 168 DGISGLVHVSQISEKRIKSPKAVLSIGDTVK 198
>gi|84496588|ref|ZP_00995442.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
gi|84383356|gb|EAP99237.1| 30S ribosomal protein S1 [Janibacter sp. HTCC2649]
Length = 502
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 130/233 (55%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEF 153
FN G V+G + D L+DI K+ +P++E I H I E + G + E
Sbjct: 35 FND--GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDIDPNEVVKV--GDEVEA 90
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF
Sbjct: 91 LVLQKEDKEGRLILSKKRAQYERAWGTIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGF 149
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++ L
Sbjct: 150 LPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKELQ 209
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ GD + V
Sbjct: 210 KGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGDEVTV 262
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 29/217 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA---------EVEGLRGF 213
+++VLS R AW Q + +K G + GVV+ ++ G+ G
Sbjct: 183 NNVVLSRR------AWLEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFVDLGGVDGL 236
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G ++ ++ ++VD ++ R+ LS + D IG
Sbjct: 237 VHVSELSWKHIDHPSEVVEVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIG 296
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
VV G V L P+G+F+ + GI GL+H+S+++ V
Sbjct: 297 QVVPGKVTKLVPFGSFVRVEDGIEGLVHISELAERHV 333
>gi|148272934|ref|YP_001222495.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|170782356|ref|YP_001710689.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
gi|147830864|emb|CAN01808.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
michiganensis NCPPB 382]
gi|169156925|emb|CAQ02093.1| 30S ribosomal protein S1 [Clavibacter michiganensis subsp.
sepedonicus]
Length = 484
Score = 113 bits (283), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H +
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLIDVGYKTEGVIPSRELSIKHDVDPT 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +++ D VV G V+ K
Sbjct: 80 EVVKV--GDTVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKESDGVVTGTVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + +
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEQT 196
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSESRSTFLNNLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R + Q E LQ V KG V G ++ G+ G V S+
Sbjct: 183 NNVVLSRRALLEQTQSESRSTFLNNLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 241
Query: 219 ISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K A E++ G+++ ++ +EVD ++ R+ LS + D IG V G
Sbjct: 242 LSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQEDPWQVFARTHAIGQVAPG 301
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD + V
Sbjct: 302 KVTKLVPFGAFVRVAEGIEGLVHISELSGKHVELAEQVVSVGDEVFV 348
>gi|284031037|ref|YP_003380968.1| RNA binding S1 domain-containing protein [Kribbella flavida DSM
17836]
gi|283810330|gb|ADB32169.1| RNA binding S1 domain protein [Kribbella flavida DSM 17836]
Length = 492
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 28 EDFLAAIDLTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 84
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 85 NEVVNV--GDHVEALVLQKEDKEGRLILSKKRAQYEKAWGTIEKIKEEDGVVTGTVIEVV 142
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 143 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 201
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + V++
Sbjct: 202 TQSEVRMNFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPTEVVE 261
Query: 310 PGDTLKV 316
G + V
Sbjct: 262 VGQEVTV 268
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 19/229 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 134 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 188
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 189 NNVVLSRRAWLEQTQSEVRMNFLTQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 247
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q +G +V G
Sbjct: 248 LSWKHIDHPTEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFARTHQMGQIVPG 307
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L P+GAF+ + GI GL+H+S+++ V V+Q D + V +
Sbjct: 308 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVNDDVMVKI 356
>gi|417972279|ref|ZP_12613190.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
gi|344043437|gb|EGV39130.1| 30S ribosomal protein S1 [Corynebacterium glutamicum S9114]
Length = 486
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I H +
Sbjct: 16 SAEDFLAAIDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLIIDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKNR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|294501088|ref|YP_003564788.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
gi|295706435|ref|YP_003599510.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
gi|294351025|gb|ADE71354.1| 30S ribosomal protein S1 [Bacillus megaterium QM B1551]
gi|294804094|gb|ADF41160.1| 30S ribosomal protein S1 [Bacillus megaterium DSM 319]
Length = 378
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 127/232 (54%), Gaps = 19/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAG--IVPGLKEEFV 154
E+G VKGT+ + + VD+ +K +P E H+E+AG I G + E
Sbjct: 14 EVGETVKGTITKVEEKQVYVDVPNSKLDGIIPISELAS---LHIEKAGDVIQEGAEVEAK 70
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+I DD LVLS R + E AW+ S V + V KGG+V ++ G+RGF+
Sbjct: 71 VI--KVEDDLLVLSKRAVDAEKAWDGLEAKLSSGEVFEAVVKEIVKGGLVVDI-GVRGFI 127
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S + + + E + L +K VE+D+E++R++LS+R + + Q L
Sbjct: 128 PASLVETHFVDDFAEYQDQTLTVKVVELDKEKNRVILSHRAVVEEELVQQKENVLESLKE 187
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF+D+GG++GL+H+SQ+SH RV + V+ GD +KV
Sbjct: 188 GQVLEGTVQRLTDFGAFVDVGGVDGLVHISQLSHTRVEKPSDVVAEGDAVKV 239
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 87/167 (52%), Gaps = 18/167 (10%)
Query: 165 LVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS- 220
++LS R +++ EL ++ L+S E V++G V G +V G+ G V SQ+S
Sbjct: 162 VILSHRAVVEEELVQQKENVLESLKEGQVLEGTVQRLTDFGAFVDVGGVDGLVHISQLSH 221
Query: 221 ------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIG 270
S AE G + +K + VD+ R+ LS + + ++ +L G VV G
Sbjct: 222 TRVEKPSDVVAE---GDAVKVKVLSVDKSTGRVSLSIKDTLEGPWSNISTKLRQGDVVDG 278
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TV+ L +GAF+++ G+ GL+H+SQISH + VL G+ + V
Sbjct: 279 TVKRLVSFGAFVEVLPGVEGLVHISQISHKHIGTPHEVLSEGEKVTV 325
>gi|383776757|ref|YP_005461323.1| 30S ribosomal protein S1 [Actinoplanes missouriensis 431]
gi|381369989|dbj|BAL86807.1| putative ribosomal protein S1 [Actinoplanes missouriensis 431]
Length = 503
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ +D VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLTKEDKEGRLILSKKRAQYERAWGTIEKIKEDDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAINQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
V L P+GAF+ + GI GL+H+S+++ V V+Q G
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVELPEQVVQVG 344
>gi|19552573|ref|NP_600575.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|62390242|ref|YP_225644.1| 30S ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|21324127|dbj|BAB98752.1| Ribosomal protein S1 [Corynebacterium glutamicum ATCC 13032]
gi|41325579|emb|CAF21368.1| 30S RIBOSOMAL PROTEIN S1 [Corynebacterium glutamicum ATCC 13032]
gi|385143485|emb|CCH24524.1| 30S ribosomal protein S1 [Corynebacterium glutamicum K051]
Length = 486
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/249 (31%), Positives = 139/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+GTV D L+DI K+ +P++E I H +
Sbjct: 16 SAEDFLAAIDATIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLIIDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKNR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ +EVD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLEVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|72161595|ref|YP_289252.1| 30S ribosomal protein S1 [Thermobifida fusca YX]
gi|71915327|gb|AAZ55229.1| SSU ribosomal protein S1P [Thermobifida fusca YX]
Length = 485
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V+GT+ D L+DI K+ +P++E I H +
Sbjct: 22 EAFLAAIDETIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 78
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 79 HEVVAV--GDHVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVV 136
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQ 195
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 196 TQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 255
Query: 310 PGDTLKV 316
G + V
Sbjct: 256 VGQEVTV 262
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 33/215 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE-----------DVVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R AW Q QSE + KG V G ++ G+
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQTFLNTLQKGQIRKGVVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD E+ R+ LS + D Q
Sbjct: 235 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMERERVSLSLKATQEDPWQQFARTHQ 294
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG +V G V L P+GAF+ + GI GL+H+S+++
Sbjct: 295 IGQIVPGKVTKLVPFGAFVRVEEGIEGLVHISELA 329
>gi|380302401|ref|ZP_09852094.1| 30S ribosomal protein S1 [Brachybacterium squillarum M-6-3]
Length = 494
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 135/235 (57%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ +P++E I + +E + G +
Sbjct: 29 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVNPDEV-VEVGDEI 84
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW Q++ ++ VV G+V+ KGG++ ++ GLR
Sbjct: 85 EALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVVKGGLIVDI-GLR 143
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------Q 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + ++Q+
Sbjct: 144 GFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFLQT 203
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G +KV
Sbjct: 204 LQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQKVKV 258
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G V G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGRVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 178
Query: 163 DSLVLSLRMIQYEL-AWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R E + R LQ+ + V +G V G ++ G+ G V S++
Sbjct: 179 NNVVLSRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSEL 238
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVIG 270
S K +G+ + ++ ++VD ++ R+ LS KA + QL IG VV G
Sbjct: 239 SWKHIDHPSEVVEVGQKVKVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHAIGEVVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 329
>gi|256545242|ref|ZP_05472607.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
gi|256399069|gb|EEU12681.1| conserved hypothetical protein [Anaerococcus vaginalis ATCC 51170]
Length = 691
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/262 (29%), Positives = 132/262 (50%), Gaps = 14/262 (5%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
+Q+ EE R E + ++E+ + D V GT+ + VDI
Sbjct: 264 DQVIEEVVNRMDDLTNEELMNSIEDSMKKIYPRDV-------VNGTIIDVKDDEVFVDIQ 316
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
++ + E + ++ ++ + G + E +I ++ + ++ LS R ++ W+
Sbjct: 317 YRADGIVKLDEMTEEQRENPKDNFEI-GQEVEVYVIKLDDGEGNVSLSTRRVEGMKNWKN 375
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFV 238
R+ D V+G V GANKGG+ A V G+ GFVP SQI+ ++ +G+ LK +
Sbjct: 376 LREAYENDQTVEGDVTGANKGGLTARVMGINGFVPASQIAPYFVKNFKKFVGEHWDLKII 435
Query: 239 EVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVS 294
+DE ++RLVLS + + + + +L G V+ G V L +GAFI+IG ++GLLHVS
Sbjct: 436 SIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLTDFGAFIEIGSLDGLLHVS 495
Query: 295 QISHDRVADIATVLQPGDTLKV 316
I+ RV VL GD ++V
Sbjct: 496 DIAWTRVEHPKDVLNIGDDIEV 517
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 106/214 (49%), Gaps = 13/214 (6%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
N+G L + ++P + + +K+ ++ G + II +E + LVLS +
Sbjct: 394 NKGGLTARVMGINGFVPASQIAPYFVKNFKK---FVGEHWDLKIISIDERKNRLVLSRKD 450
Query: 172 IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL--- 228
I E E+ +L+ E V+ GKV G E+ L G + S I+
Sbjct: 451 IVEEKLDEQWDELE-EGQVITGKVARLTDFGAFIEIGSLDGLLHVSDIAWTRVEHPKDVL 509
Query: 229 -LGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGAFID 283
+G D+ +K +++++E++R+ L + K A+ + +G V+ G V +L +GAF++
Sbjct: 510 NIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNEHEVGDVITGKVVNLLDFGAFVE 569
Query: 284 IG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+ GL+HVS+IS D V + L GD ++V
Sbjct: 570 VSEGVEGLIHVSEISWDHVEKPSDELNVGDEVEV 603
>gi|317124795|ref|YP_004098907.1| 30S ribosomal protein S1 [Intrasporangium calvum DSM 43043]
gi|315588883|gb|ADU48180.1| SSU ribosomal protein S1P [Intrasporangium calvum DSM 43043]
Length = 493
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 131/235 (55%), Gaps = 18/235 (7%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG--IVPGLKE 151
DFN G V+G + D L+DI K+ +P++E I KH + G + G +
Sbjct: 34 DFND--GDIVEGRIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPGEIVKVGDEV 88
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 89 EALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDI-GLR 147
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 GFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKE 207
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 LQKGQVRQGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGTDVTV 262
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 182
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ ++LQ V +G V G ++ G+ G V S+
Sbjct: 183 NNVVLSRRAWLEQTQSEVRTTFLKELQKGQVR-QGVVSSIVNFGAFVDLGGVDGLVHVSE 241
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G D+ ++ ++VD ++ R+ LS + D IG VV G
Sbjct: 242 LSWKHIDHPSEVVEVGTDVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIGQVVPG 301
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 302 KVTKLVPFGAFVRVEDGIEGLVHISELAERHV 333
>gi|386846784|ref|YP_006264797.1| 30S ribosomal protein S1 [Actinoplanes sp. SE50/110]
gi|359834288|gb|AEV82729.1| 30S ribosomal protein S1 [Actinoplanes sp. SE50/110]
Length = 500
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 133/229 (58%), Gaps = 22/229 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E F +A++ KY FN G V+GTV D L+DI K+ +P++E I KH
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +++ +D VV+G V+
Sbjct: 77 VDPAEVVSVGDHIEALVLTKEDKEGRLILSKKRAQYERAWGTIEKIKEDDGVVRGSVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 196 QTQSEVRTEFLNKLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELS 244
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/222 (27%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VRGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +LQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRTEFLNKLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K + +G+++ ++ ++VD ++ R+ LS + D Q I +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVEVEVLDVDLDRERVSLSLKATQEDPWRQFARTHAINQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
V L P+GAF+ + GI GL+H+S+++ V V+Q G
Sbjct: 303 KVTKLVPFGAFVRVDDGIEGLVHISELAERHVELPEQVVQVG 344
>gi|256371862|ref|YP_003109686.1| RNA binding S1 domain-containing protein [Acidimicrobium
ferrooxidans DSM 10331]
gi|256008446|gb|ACU54013.1| RNA binding S1 domain protein [Acidimicrobium ferrooxidans DSM
10331]
Length = 427
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 129/230 (56%), Gaps = 14/230 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G V G V D L+DI KS +P +E I K V A +V G + + +++ +
Sbjct: 52 GDIVSGLVVKVDKDEVLLDIGYKSEGVIPLRELSIRK--DVSPADVVSVGDRIDALVLQK 109
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + LVLS + Q+E AW+ +++ D VV+G+V+ KGG++ ++ GLRGF+P S
Sbjct: 110 EDREGRLVLSKKRAQFEKAWKEIEAIKARDGVVRGEVIEVVKGGLIVDI-GLRGFLPASH 168
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
+ + + +G+D+ K +E+D ++ +VLS R + ++Q + G V
Sbjct: 169 VDLRRVRDLAPFVGQDIEAKIIELDRGRNNVVLSRRAYLEENQRDQRERFLTSIRPGEVR 228
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V S+ +G F+D+GG++GL+HVS++S + V ++V+ GD ++V +
Sbjct: 229 KGVVSSIVHFGVFVDLGGMDGLVHVSELSWNHVDHPSSVVSVGDEVQVLV 278
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 17/228 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+G V G +VDI + +LP + +++ + A V G E II +
Sbjct: 142 VRGEVIEVVKGGLIVDIGLR--GFLPASHVDLRRVRDL--APFV-GQDIEAKIIELDRGR 196
Query: 163 DSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R ++ +R R L S V KG V GV ++ G+ G V S++
Sbjct: 197 NNVVLSRRAYLEENQRDQRERFLTSIRPGEVRKGVVSSIVHFGVFVDLGGMDGLVHVSEL 256
Query: 220 S----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S ++ +G ++ + +EVD+E R+ LS + D + IG +V G
Sbjct: 257 SWNHVDHPSSVVSVGDEVQVLVLEVDQEHERISLSLKATQRDPWQEFASAHKIGELVYGR 316
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V + P+G F+ + GI GL+H+S+++ V V+ G+ L V +
Sbjct: 317 VTKIVPFGCFVQVAPGIEGLVHISEMALHHVDLPEQVVSVGEELWVKI 364
>gi|229010903|ref|ZP_04168099.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
gi|423486714|ref|ZP_17463396.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
gi|423492438|ref|ZP_17469082.1| ribosomal protein S1 [Bacillus cereus CER057]
gi|423500771|ref|ZP_17477388.1| ribosomal protein S1 [Bacillus cereus CER074]
gi|423516257|ref|ZP_17492738.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
gi|423601062|ref|ZP_17577062.1| ribosomal protein S1 [Bacillus cereus VD078]
gi|423663521|ref|ZP_17638690.1| ribosomal protein S1 [Bacillus cereus VDM022]
gi|228750303|gb|EEM00133.1| 30S ribosomal protein S1 [Bacillus mycoides DSM 2048]
gi|401155057|gb|EJQ62471.1| ribosomal protein S1 [Bacillus cereus CER074]
gi|401155922|gb|EJQ63329.1| ribosomal protein S1 [Bacillus cereus CER057]
gi|401165163|gb|EJQ72482.1| ribosomal protein S1 [Bacillus cereus HuA2-4]
gi|401231608|gb|EJR38111.1| ribosomal protein S1 [Bacillus cereus VD078]
gi|401295421|gb|EJS01045.1| ribosomal protein S1 [Bacillus cereus VDM022]
gi|402438591|gb|EJV70600.1| ribosomal protein S1 [Bacillus cereus BtB2-4]
Length = 382
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 130/234 (55%), Gaps = 24/234 (10%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G V G+V + + LV++ K+ +P E A +H +E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 157 GENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
DD LVLS R + E AW E+ DV+VK V GG+V ++ G+RG
Sbjct: 72 IIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVIVKDIV----NGGLVVDL-GVRG 126
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI--- 264
F+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 127 FIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSL 186
Query: 265 --GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 187 KEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E +V+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|392400474|ref|YP_006437074.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
gi|390531552|gb|AFM07281.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis Cp162]
Length = 487
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 18 EDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 75 DEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRTWLEQ 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRTWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 340
>gi|423610022|ref|ZP_17585883.1| ribosomal protein S1 [Bacillus cereus VD107]
gi|401249339|gb|EJR55645.1| ribosomal protein S1 [Bacillus cereus VD107]
Length = 382
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV+I K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNIGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + E GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFTEYKGKALAVKIVELDREKNRVILSHKAVVEQELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 111/217 (51%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTEYKGKALAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E +V+G V G V G+ G V SQIS + +
Sbjct: 170 VVEQELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + +++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVASEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + + VL+ G + V
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPSEVLEMGQEVTV 326
>gi|383808184|ref|ZP_09963736.1| 30S ribosomal protein S1 [Rothia aeria F0474]
gi|383449142|gb|EID52087.1| 30S ribosomal protein S1 [Rothia aeria F0474]
Length = 484
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 136/248 (54%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
EEF A++ KY FN G V G V D+ L+DI K+ +P++E I KH
Sbjct: 17 EEFLKAVDETIKY-FND--GDLVSGQVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHD 70
Query: 141 EEAG--IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G + G + E +++ + + + L+LS + QYE AW +++ D VV G V+
Sbjct: 71 VDPGEVVTVGDEIEALVLTKEDKEGRLILSKKRAQYERAWGDIEKIKENDGVVTGTVIEV 130
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ L K +E+D+ ++ +VLS R +
Sbjct: 131 VKGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAWLE 189
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 190 QTQSEVRSTFLNQLEKGQVRDGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 249
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 250 EVGQKVTV 257
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 109/227 (48%), Gaps = 43/227 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQLEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRSTFLNQLEKGQV----RDGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+ + ++ +EVD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGQKVTVEVLEVDLDRERVSLSLKATQEDPWQAFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS--HDRVAD 303
+G +V G V L P+GAF+ + GI GL+H+S+++ H +AD
Sbjct: 286 RTHALGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAVRHVDLAD 332
>gi|337290612|ref|YP_004629633.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|384515525|ref|YP_005710617.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|397653858|ref|YP_006494541.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
gi|334696726|gb|AEG81523.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 809]
gi|334698918|gb|AEG83714.1| 30S ribosomal protein S1 [Corynebacterium ulcerans BR-AD22]
gi|393402814|dbj|BAM27306.1| 30S ribosomal protein S1 [Corynebacterium ulcerans 0102]
Length = 487
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 18 EDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 75 DEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQ 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 340
>gi|300858350|ref|YP_003783333.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|375288519|ref|YP_005123060.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|379715230|ref|YP_005303567.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|383314109|ref|YP_005374964.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|384504528|ref|YP_005681198.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|384506621|ref|YP_005683290.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|384508709|ref|YP_005685377.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|384510800|ref|YP_005690378.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|385807399|ref|YP_005843796.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|386740269|ref|YP_006213449.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|387136462|ref|YP_005692442.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|387138534|ref|YP_005694513.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140533|ref|YP_005696511.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|389850285|ref|YP_006352520.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
gi|300685804|gb|ADK28726.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis FRC41]
gi|302206068|gb|ADL10410.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis C231]
gi|302330619|gb|ADL20813.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 1002]
gi|308276305|gb|ADO26204.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis I19]
gi|341824739|gb|AEK92260.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis PAT10]
gi|348606907|gb|AEP70180.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
42/02-A]
gi|349735012|gb|AEQ06490.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355392324|gb|AER68989.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
1/06-A]
gi|371575808|gb|AEX39411.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
3/99-5]
gi|377653936|gb|AFB72285.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 316]
gi|380869610|gb|AFF22084.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis
P54B96]
gi|383804792|gb|AFH51871.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 267]
gi|384476963|gb|AFH90759.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 31]
gi|388247591|gb|AFK16582.1| 30S ribosomal protein S1 [Corynebacterium pseudotuberculosis 258]
Length = 487
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I H +
Sbjct: 18 EDFLAAVDATIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSIKHDVDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 75 DEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D++++ +VLS R +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQQIEAKIIELDKQRNNVVLSRRAWLEQ 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVA 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQQIEAKIIELDKQR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVAVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ V V+ GD
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHVEVPDQVVNVGD 340
>gi|88856205|ref|ZP_01130865.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
gi|88814524|gb|EAR24386.1| 30S ribosomal protein S1 [marine actinobacterium PHSC20C1]
Length = 488
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H +
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPT 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW ++ D VV G V+ K
Sbjct: 80 EVVNV--GDTVEALVLQKEDKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + ++
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEET 196
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGSVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMIQYEL-AWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R + E + R L ++ V KG V G ++ G+ G V S++
Sbjct: 183 NNVVLSRRALLEETQSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSEL 242
Query: 220 SSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S K A E++ G+++ ++ +EVD E+ R+ LS + D IG V G
Sbjct: 243 SWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKATQEDPWQVFARTHAIGQVAPGK 302
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD + V
Sbjct: 303 VTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGDEVFV 348
>gi|403737731|ref|ZP_10950459.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
gi|403191843|dbj|GAB77229.1| 30S ribosomal protein S1 [Austwickia chelonae NBRC 105200]
Length = 485
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 130/234 (55%), Gaps = 18/234 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG--IVPGLKEE 152
FN G V+G + D L+DI K+ +P++E I KH + G + G + E
Sbjct: 32 FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPGEVVTVGDEVE 86
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRG
Sbjct: 87 ALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVKGGLILDI-GLRG 145
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------L 262
F+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++ L
Sbjct: 146 FLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKEL 205
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 206 QKGQVRTGQVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 259
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ ++LQ V G+V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRTTFLKELQKGQVRT-GQVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG VV G
Sbjct: 239 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIGQVVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 299 KVTKLVPFGAFVRVDDGIEGLVHISELAERHV 330
>gi|400974618|ref|ZP_10801849.1| 30S ribosomal protein S1 [Salinibacterium sp. PAMC 21357]
Length = 488
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H +
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPT 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW ++ D VV G V+ K
Sbjct: 80 EVVNV--GDTVEALVLQKEDKEGRLILSKKRAQYERAWGDVELIKESDGVVTGSVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + ++
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEET 196
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 17/226 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGSVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMIQYEL-AWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R + E + R L ++ V KG V G ++ G+ G V S++
Sbjct: 183 NNVVLSRRALLEETQSASRTSFLNNLAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSEL 242
Query: 220 SSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S K A E++ G+++ ++ +EVD E+ R+ LS + D IG V G
Sbjct: 243 SWKHIEHASEVVEVGQEVTVEILEVDLERERVSLSLKATQEDPWQVFARTHAIGQVAPGK 302
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S++S V V+ GD + V
Sbjct: 303 VTKLVPFGAFVRVADGIEGLVHISELSGKHVELAEQVVSVGDEVFV 348
>gi|311068805|ref|YP_003973728.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|419820553|ref|ZP_14344163.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
gi|310869322|gb|ADP32797.1| 30S ribosomal protein S1 [Bacillus atrophaeus 1942]
gi|388475369|gb|EIM12082.1| 30S ribosomal protein S1 [Bacillus atrophaeus C89]
Length = 382
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKADDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEEKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + G+ L L VE+D +++R++LS+R + Q L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGRTLTLIVVELDRDKNRVILSHRAVVEKEQTNKKQEFLQTLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/236 (27%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGRTLTLI 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E ++ LQ+ +V V++GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVEKEQTNKKQEFLQTLEVGSVLEGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS ++ + +Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKETLPGPWSQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAF++I G+ GL+H+SQIS+ + VL+ G +KV
Sbjct: 270 VKKGDVLEGKVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQDVKV 325
>gi|300781295|ref|ZP_07091149.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
gi|300533002|gb|EFK54063.1| 30S ribosomal protein S1 [Corynebacterium genitalium ATCC 33030]
Length = 491
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
EEF +A++ KY FN G V GTV D+ L+DI K+ + ++E I H I
Sbjct: 18 EEFLAAVDATIKY-FND--GDIVTGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDIDP 74
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + + +++ + + + L+LS + QYE AW +LQ D V G V+
Sbjct: 75 DEVVQI--GDEIDALVLTKEDKEGRLLLSKKRAQYERAWGTIEELQKNDQPVTGTVIEVV 132
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R + +
Sbjct: 133 KGGLILDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKHRNNVVLSRRAYLEE 191
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 TQSAVRSDFLHQLEKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVT 251
Query: 310 PGDTLKV 316
GD + V
Sbjct: 252 VGDEVTV 258
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKHR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q + + QL+ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAYLEETQSAVRSDFLHQLEKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|338811526|ref|ZP_08623740.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Acetonema longum DSM 6540]
gi|337276493|gb|EGO64916.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Acetonema longum DSM 6540]
Length = 654
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 138/276 (50%), Gaps = 17/276 (6%)
Query: 59 ELNQ-LFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSEL-----GTKVKGTVFCTDN 112
EL Q FE A + TA + +EE ++ +++ + + L G ++GTV
Sbjct: 242 ELKQHWFEGARQVGITAGASTPQWIIEEVYTTMQQMEQDDRLKRLEPGMLIQGTVVDVRQ 301
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172
VD+ K+ + E +A + G + V++ N A+ S+ LS
Sbjct: 302 DEVFVDVGYKAEGIIALSELAFPAPAKASDA-VEKGQVIDVVVLDANSAEGSVKLSKVQA 360
Query: 173 QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLG 230
++AW + + E+ ++ KV+GA KGG+ V G+RGF+P SQ+ K T E G
Sbjct: 361 DKQVAWTKLEEALRENRTLEAKVLGAIKGGLSVAVLGIRGFMPASQVDLKYTENLSEYAG 420
Query: 231 KDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG--------IGSVVIGTVQSLKPYGAFI 282
+ + +EV E+S++VLS R + + +LG +G V GTV L +GAF+
Sbjct: 421 QTIQCLAIEVVPEKSKVVLSRRALLEAEKERLGKELFAKWKVGDQVHGTVTRLADFGAFV 480
Query: 283 DIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
D+GGI GL+H+S +S RV + V+ GD ++V +
Sbjct: 481 DLGGIEGLIHISDLSWQRVKSPSEVVNAGDAVQVII 516
Score = 43.9 bits (102), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 9/135 (6%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSR 246
V G V G ++ G+ G + S +S KS +E + G + + V++D E R
Sbjct: 466 VHGTVTRLADFGAFVDLGGIEGLIHISDLSWQRVKSPSEVVNAGDAVQVIIVKLDSENKR 525
Query: 247 LVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
+ LS ++ M D + + G V G + +GAF ++ G+ GL+H+S+++ R+
Sbjct: 526 IGLSLKQTMPDPWFTAAEEYREGMTVSGVITRTSKFGAFAELKAGVEGLIHISELTDHRI 585
Query: 302 ADIATVLQPGDTLKV 316
D + G + V
Sbjct: 586 NDAKEAVTAGQKVTV 600
>gi|163841039|ref|YP_001625444.1| 30S ribosomal protein S1 [Renibacterium salmoninarum ATCC 33209]
gi|162954515|gb|ABY24030.1| SSU ribosomal protein S1P [Renibacterium salmoninarum ATCC 33209]
Length = 504
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V+G V D L+DI K+ +P++E I H +
Sbjct: 38 EDFLAAIDATIKY-FND--GDLVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 94
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW ++Q ED VV G V+
Sbjct: 95 SEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGDIEKVQEEDGVVTGTVIEVV 152
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R +
Sbjct: 153 KGGLILDI-GLRGFLPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAWLEQ 211
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 212 TQSEVRSTFLNKLEKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 271
Query: 310 PGDTLKV 316
G + V
Sbjct: 272 VGREVTV 278
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 144 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 198
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + + KG+V + GVV+ ++
Sbjct: 199 NNVVLSRR------AW--LEQTQSEVRSTFLNKLEKGQV----RPGVVSSIVNFGAFVDL 246
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ +EVD ++ R+ LS + D
Sbjct: 247 GGVDGLVHVSELSWKHIDHPSEVVEVGREVTVEVLEVDLDRERVSLSLKATQEDPWQTFA 306
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD L V
Sbjct: 307 RTHALGQVVPGRVTKLVPFGAFVRVEDGIEGLVHISELAVRHVELAEQVVSVGDELFV 364
>gi|269218432|ref|ZP_06162286.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211543|gb|EEZ77883.1| ribosomal protein S1 [Actinomyces sp. oral taxon 848 str. F0332]
Length = 486
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 134/236 (56%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G ++GTV D+ L+D+ K+ +P++E I H I E + G +
Sbjct: 32 KY-FND--GDIIEGTVVKVDHDEVLLDVGYKTEGVIPSKELSIKHDINPDEVVEV--GDQ 86
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW + +++ D VV G V+ KGG++ ++ GL
Sbjct: 87 VEALVLQKEDKEGRLLLSKKRAQYERAWSQIEEVKEADGVVTGTVIEVVKGGLILDI-GL 145
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +G+++ K +E+D+ ++ +VLS R + ++Q+Q
Sbjct: 146 RGFLPASLVEMRRVRDLQPYIGREIEAKIIELDKNRNNVVLSRRSWLEETQSQARGEFLT 205
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G + S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 206 NLKKGQVRDGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQKVTV 261
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 127 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGREIEAKIIELDKNR 181
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA---------EVEGLRGF 213
+++VLS R +W Q Q+ + G + GV++ ++ G+ G
Sbjct: 182 NNVVLSRR------SWLEETQSQARGEFLTNLKKGQVRDGVISSIVNFGAFVDLGGVDGL 235
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIG 265
V S++S K +G+ + ++ ++VD ++ R+ LS + D GIG
Sbjct: 236 VHVSELSWKHIDHPSEVVEVGQKVTVEVLDVDMDRERVSLSLKATQEDPWQTFARTHGIG 295
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
+V G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 296 QIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 332
>gi|410865869|ref|YP_006980480.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
4875]
gi|410822510|gb|AFV89125.1| 30S ribosomal protein S1 [Propionibacterium acidipropionici ATCC
4875]
Length = 503
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 135/244 (55%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 39 EAFMAAVDATIKY-FND--GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 95
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 96 FEVVQV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKDEDGVVNGTVIEVV 153
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R +
Sbjct: 154 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAWLEQ 212
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 213 TQSEVRHNFLQQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 272
Query: 307 VLQP 310
V QP
Sbjct: 273 VGQP 276
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 145 VNGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 199
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ +QLQ + KG V G ++ G+ G V S+
Sbjct: 200 NNVVLSRRAWLEQTQSEVRHNFLQQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 258
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 259 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 318
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 319 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 350
>gi|227495256|ref|ZP_03925572.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
gi|226831708|gb|EEH64091.1| 30S ribosomal protein S1 [Actinomyces coleocanis DSM 15436]
Length = 481
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D+ L+DI K+ + ++E I H I E + G K E +++
Sbjct: 35 GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDI--APEDIVKIGDKVEALVLQM 92
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 93 EDKEGRLLLSKKRAQYERAWGTIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPASL 151
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 152 VEMRRVRDLAPYIGRELEAKIIELDKNRNNVVLSRRSYLEQTQSEVRTNFLHTLQKGQVR 211
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + A V++ GD + V
Sbjct: 212 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPAEVVEVGDEVTV 259
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 19/223 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGRELEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ LQ V G V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRSYLEQTQSEVRTNFLHTLQKGQVR-SGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKST---AEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K AE + +G ++ ++ +EVD + R+ LS + M D IG VV G
Sbjct: 239 LSWKHIDHPAEVVEVGDEVTVEVLEVDMSRERVSLSLKATMEDPWQAFARTHAIGQVVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
V L P+GAF+ + GI GL+H+S+++ + V++ GD
Sbjct: 299 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHIEAPEQVVKVGD 341
>gi|257792261|ref|YP_003182867.1| RNA binding S1 domain-containing protein [Eggerthella lenta DSM
2243]
gi|317490189|ref|ZP_07948677.1| S1 RNA binding domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325833424|ref|ZP_08165873.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
gi|257476158|gb|ACV56478.1| RNA binding S1 domain protein [Eggerthella lenta DSM 2243]
gi|316910683|gb|EFV32304.1| S1 RNA binding domain-containing protein [Eggerthella sp.
1_3_56FAA]
gi|325485348|gb|EGC87817.1| 30S ribosomal protein S1 [Eggerthella sp. HGA1]
Length = 405
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 141/264 (53%), Gaps = 28/264 (10%)
Query: 64 FEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
FE+ + A ++G TL EF G V GTV ++ LVDI KS
Sbjct: 12 FEDISDEQMNAMIDG---TLTEFDE-----------GDLVDGTVVKIEHDEVLVDIGFKS 57
Query: 124 SAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+P++E I K + + IV G K E +++ + + D L+LS + +YE AW R
Sbjct: 58 EGVIPSRELSIRK--DADPSDIVELGEKIEALVLQKEDKDGRLILSKKRAEYERAWIRVE 115
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEV 240
+ VV G+V+ KGG++ ++ GLRGF+P S + + + LG ++ + +E+
Sbjct: 116 EKFKAGEVVTGEVIEVVKGGLILDI-GLRGFLPASLVDLRRVKDLDMYLGTEIEARVIEM 174
Query: 241 DEEQSRLVLSNRKAM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
D ++ +VLS R + A+ A+L G + GTV S+ +GAF+D+GGI+GL+H
Sbjct: 175 DRNRNNVVLSRRVLLEEGRKNERAEILAKLSKGMRLKGTVSSIVDFGAFVDLGGIDGLVH 234
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
+S++S + V + V++ GD ++V
Sbjct: 235 ISELSWNHVNHPSEVVKVGDEVEV 258
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 121/244 (49%), Gaps = 17/244 (6%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + + G V G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWIRVEEKFKAGEVVTGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLD 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYE-LAWERCRQLQ--SEDVVVKGKVVGANKG 201
+ G + E +I + +++VLS R++ E ER L S+ + +KG V
Sbjct: 161 MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILAKLSKGMRLKGTVSSIVDF 220
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S +G ++ ++ ++VD ++ R+ L ++ D
Sbjct: 221 GAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLKQTTED 280
Query: 258 SQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
+L +G++V G V + P+GAFI++G I GL+H+S+++ + A V++ GD
Sbjct: 281 PWVKLVESYPVGTIVDGKVTKIVPFGAFIELGQSIEGLVHISEMAMRHIDTPAQVVKAGD 340
Query: 313 TLKV 316
+KV
Sbjct: 341 EVKV 344
>gi|381397179|ref|ZP_09922592.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
gi|380775496|gb|EIC08787.1| RNA binding S1 domain protein [Microbacterium laevaniformans OR221]
Length = 483
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 137/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H +
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDVDPN 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G + E +++ + + + L+LS + QYE AW +++ D VV G V+ K
Sbjct: 80 EVVKV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENDGVVTGSVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + +
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEQT 196
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSESRTTFLNNLHKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGSVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSED-----------VVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R + Q QSE V KG V G ++ G+
Sbjct: 183 NNVVLSRRAL--------LEQTQSESRTTFLNNLHKGQVRKGVVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K A E++ G+++ ++ +EVD ++ R+ LS + D
Sbjct: 235 GLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQEDPWQVFARTHA 294
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
IG V G V L P+GAF+ + GI GL+H+S++S V
Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHV 333
>gi|336119735|ref|YP_004574512.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
gi|334687524|dbj|BAK37109.1| 30S ribosomal protein S1 [Microlunatus phosphovorus NM-1]
Length = 488
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 20 EAFLAAIDATIKY-FND--GDIVTGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 77 FEVVSV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIERIKEEDGVVTGSVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGQELEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 194 TQSEVRQNFLTQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 253
Query: 310 PGDTLKV 316
G + V
Sbjct: 254 VGQEVTV 260
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGQELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRQNFLTQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFARTHQIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHVSELAERHV 331
>gi|334563708|ref|ZP_08516699.1| 30S ribosomal protein S1 [Corynebacterium bovis DSM 20582]
Length = 488
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 140/250 (56%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ E+F +A++ KY FN G V+GTV D+ L+DI K+ +P++E I K
Sbjct: 16 SAEDFLAAVDSTIKY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---K 69
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + V + +E +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 70 HDVDPDEVVEVGDEIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVI 129
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VLS R
Sbjct: 130 EVVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKHRNNVVLSRRAW 188
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + +
Sbjct: 189 LEQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSE 248
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 249 VVTVGDEVTV 258
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGQEIEAKIIELDKHR 178
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAWLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARTHAIGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 329
>gi|384158705|ref|YP_005540778.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
gi|384167767|ref|YP_005549145.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens XH7]
gi|328552793|gb|AEB23285.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens TA208]
gi|341827046|gb|AEK88297.1| 30S ribosomal protein S1 [Bacillus amyloliquefaciens XH7]
Length = 378
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/230 (34%), Positives = 125/230 (54%), Gaps = 19/230 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVNVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEV----KGGLVVDI-GVRGFIPA 125
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGS 266
S + + + + GK L L VE+D +++R++LS+R + Q L +GS
Sbjct: 126 SLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRVILSHRAVVEKEQTAKKHDFLQTLEVGS 185
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 186 VLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQDVKV 235
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 116/225 (51%), Gaps = 22/225 (9%)
Query: 107 VFCTDNRGALV-DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL 165
VF + +G LV DI + ++P A + + VE+ G +++ + + +
Sbjct: 104 VFEAEVKGGLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLIVVELDRDKNRV 158
Query: 166 VLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
+LS R +++ E ++ LQ+ +V V++GKV G ++ G+ G V SQ+S
Sbjct: 159 ILSHRAVVEKEQTAKKHDFLQTLEVGSVLEGKVQRLTDFGAFVDIGGIDGLVHISQLSHS 218
Query: 223 ------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTV 272
EE G+D+ +K + VD + R+ LS ++ + +Q+G G V+ G V
Sbjct: 219 HVEKPSDVVEE--GQDVKVKVLSVDRDNERISLSIKETLPGPWSQIGEKVKQGDVLEGKV 276
Query: 273 QSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
Q L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 277 QRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 321
>gi|403251339|ref|ZP_10917683.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
gi|402915310|gb|EJX36289.1| ribosomal protein S1 [actinobacterium SCGC AAA027-L06]
Length = 444
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEE 142
E+F +A+E N G V G V D L+DI K+ +P++E I H + E
Sbjct: 15 EDFLAAIEGTIKNFNDGDLVSGIVVQIDREEVLLDIGYKTEGVIPSRELSIRHDVDPSEL 74
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
+ G + E +++ + + + L+LS + QYE AW + D VV G V+ KGG
Sbjct: 75 VKV--GDRVEALVLQKEDKEGRLILSKKRAQYEQAWGDVEGKKERDEVVTGTVIEVVKGG 132
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ ++ GLRGF+P S + + + +G+ + + +E+D+ ++ +VLS R + SQ+
Sbjct: 133 LIVDI-GLRGFLPASLVEMRRVRDLTPYIGQQVECRIIELDKNRNNVVLSRRAFLEQSQS 191
Query: 261 --------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
QL G V G + S+ +GAF+D+GG++GL+HVS++S + + V++ GD
Sbjct: 192 ASRTTFLNQLQKGQVRSGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGD 251
Query: 313 TLKV 316
+ V
Sbjct: 252 EVTV 255
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 107/229 (46%), Gaps = 19/229 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 121 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLTPYIGQQVECRIIELDKNR 175
Query: 163 DSLVLSLR-MIQYELAWERC---RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R ++ + R QLQ V G + G ++ G+ G V S+
Sbjct: 176 NNVVLSRRAFLEQSQSASRTTFLNQLQKGQVR-SGVISSIVNFGAFVDLGGVDGLVHVSE 234
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ +EVD E+ R+ LS + D I VV G
Sbjct: 235 LSWKHIDHPSEVVEVGDEVTVEVLEVDFERERVSLSLKATQEDPWQAFARTHTINQVVPG 294
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L P+GAFI + GI GL+H+S+++ V V+Q GD L V +
Sbjct: 295 EVTKLVPFGAFIKVFEGIEGLVHISELAERHVEIPEQVVQVGDKLFVKI 343
>gi|398813282|ref|ZP_10571981.1| ribosomal protein S1 [Brevibacillus sp. BC25]
gi|398038943|gb|EJL32089.1| ribosomal protein S1 [Brevibacillus sp. BC25]
Length = 390
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 127/228 (55%), Gaps = 12/228 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G VK TV +++ ALVD+ K +P E ++ V + + G E +I
Sbjct: 17 VGDVVKATVTKVEDKQALVDLGYKYDGLIPISELSPLHVEKVSDV-VAVGDTFEVKVIKL 75
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N+ + LV+S + + E +W Q +++ V KGG+V +V G+RGF+P S
Sbjct: 76 NDEKEELVVSKKAVAMESSWSDLEQKMQAGEIIEATVKEVVKGGLVVDV-GVRGFIPASM 134
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS---QAQ-----LGIGSVV 268
+ + + GK L LK VE+D+E+++++LS++ + D Q Q + +G V+
Sbjct: 135 VERHFVEDFSDYKGKTLALKVVEMDKEKNKVILSHKAVLEDEVKVQKQSIMDKIQVGQVL 194
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ + +G F+DIGG++GL+HVS+++ +RV + V++ GD ++V
Sbjct: 195 EGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDKPSDVVKEGDKVQV 242
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
V++G V GV ++ G+ G V S+++ K + G + +K +++D E
Sbjct: 193 VLEGTVQRMTDFGVFVDIGGVDGLVHVSELAWNRVDKPSDVVKEGDKVQVKVLKIDRENE 252
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + A A + GS++ GTV+ L +GAFI++ GI GL+H+SQI++ R
Sbjct: 253 RIGLSIKDTQAGPWANVAEDFKAGSILNGTVKRLVSFGAFIELAPGIEGLVHISQIANRR 312
Query: 301 VADIATVLQPGDTLKV 316
V + VL+ G ++V
Sbjct: 313 VNTPSEVLKEGQEVQV 328
>gi|297571464|ref|YP_003697238.1| RNA binding S1 domain-containing protein [Arcanobacterium
haemolyticum DSM 20595]
gi|296931811|gb|ADH92619.1| RNA binding S1 domain protein [Arcanobacterium haemolyticum DSM
20595]
Length = 489
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 138/248 (55%), Gaps = 18/248 (7%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T EE +A++ KY FN G V+GTV D L+DI K+ +P++E I K
Sbjct: 17 TEEELIAAVDETIKY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVIPSKELSI-KHD 72
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ + G K E ++I + + + L+LS + QYE AW + +++ D VV G V+
Sbjct: 73 VDPDDVVEVGDKIEALVIQKEDKEGRLILSKKRAQYERAWAKIEEIKEADGVVTGTVIEV 132
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 133 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRSWLE 191
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G + S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 192 QTQSEVRSTFLNTLQKGQVRDGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 251
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 252 EVGTPVTV 259
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/256 (26%), Positives = 117/256 (45%), Gaps = 41/256 (16%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
++ A K + E V GTV G ++DI + +LP A + +++ V +
Sbjct: 107 QYERAWAKIEEIKEADGVVTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQ 161
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGA 198
G + E II ++ +++VLS R +W Q QSE + + KG+V
Sbjct: 162 PYIGKEIEAKIIELDKNRNNVVLSRR------SW--LEQTQSEVRSTFLNTLQKGQV--- 210
Query: 199 NKGGVVA---------EVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQS 245
+ GV++ ++ G+ G V S++S K +G + ++ +EVD ++
Sbjct: 211 -RDGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGTPVTVEVLEVDMDRE 269
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + D I VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 270 RVSLSLKATQEDPWQTFARTHAISQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRH 329
Query: 301 VADIATVLQPGDTLKV 316
V V++ GD + V
Sbjct: 330 VDLPEQVVKVGDDVFV 345
>gi|422011939|ref|ZP_16358697.1| 30S ribosomal protein S1 [Actinomyces georgiae F0490]
gi|394762348|gb|EJF44592.1| 30S ribosomal protein S1 [Actinomyces georgiae F0490]
Length = 479
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 134/235 (57%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQV 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G++L K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGRELDAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V GTV S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LQKGQVRTGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 33/216 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + + II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGRELDAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVV-----AEVEGLR 211
+++VLS R AW Q QSE + KG+V +V ++ G+
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQVRTGTVSSIVNFGAFVDLGGVD 229
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFARTHA 289
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH 298
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQ 325
>gi|227485051|ref|ZP_03915367.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
gi|227236884|gb|EEI86899.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
lactolyticus ATCC 51172]
Length = 692
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 7/242 (2%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
FT EEF ++LE + GTV + VDI ++ + E + K
Sbjct: 280 FTKEEFMNSLENSLRKIYPKEVITGTVINVKDDEVFVDIQYRADGIVKLDEMTEEEQKDP 339
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
+ + V G + +I ++ + ++ LS R ++ AW+ + +V GKV+ NK
Sbjct: 340 KNSFEV-GADIDVYVIKLDDGEGNVSLSTRRVEGMKAWKELSDKFENEELVHGKVISFNK 398
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA-- 256
GG+ EV G+ GFVP SQI++ ++ +G++ LK + +DE ++RLVLS + +
Sbjct: 399 GGLTVEVNGVNGFVPASQIATYFVKNLKKFVGEEWDLKIISIDERKNRLVLSRKDVLEAE 458
Query: 257 --DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
D +L G VV G V L +GAF+++ G++GLLHVS I+ RV + VL GD +
Sbjct: 459 LDDLWDELEEGQVVKGKVARLTDFGAFVEVNGLDGLLHVSDIAWTRVEHPSDVLNVGDEI 518
Query: 315 KV 316
+V
Sbjct: 519 EV 520
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 118/233 (50%), Gaps = 23/233 (9%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N EL V G V + G V++ + ++P + + +K++++ G + + I
Sbjct: 385 NEEL---VHGKVISFNKGGLTVEVNG-VNGFVPASQIATYFVKNLKK---FVGEEWDLKI 437
Query: 156 IGENEADDSLVLSLR-MIQYELA--WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I +E + LVLS + +++ EL W+ + Q VVKGKV G EV GL G
Sbjct: 438 ISIDERKNRLVLSRKDVLEAELDDLWDELEEGQ----VVKGKVARLTDFGAFVEVNGLDG 493
Query: 213 FVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GI 264
+ S I+ +G ++ +K +++++E++R+ L ++ + + +
Sbjct: 494 LLHVSDIAWTRVEHPSDVLNVGDEIEVKILKLNKEKNRISLGRKQLIEKPFEKFVNEHQV 553
Query: 265 GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V +L +GAF+++ G+ GL+HVS+IS D V + L GDT++V
Sbjct: 554 GDVVEGKVVNLLDFGAFVEVADGVEGLVHVSEISWDHVEKPSDELNVGDTIEV 606
>gi|50954808|ref|YP_062096.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951290|gb|AAT88991.1| 30S ribosomal protein S1 [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 480
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALEKY--DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHV 140
E+F +A+EK FN G ++GTV D L+D+ K+ +P++E I H I
Sbjct: 22 EDFLAAVEKTLKFFND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSIKHDIDPS 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + G E +++ + + + L+LS + QYE AW +++ D VV G V+ K
Sbjct: 80 EVVDV--GDTVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKDADGVVTGTVIEVVK 137
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R + +
Sbjct: 138 GGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLEQT 196
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 QSESRTTFLNNLYKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASEVVEV 256
Query: 311 GDTLKV 316
G + V
Sbjct: 257 GQEVTV 262
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 102/219 (46%), Gaps = 33/219 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 128 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSED-----------VVVKGKVVGANKGGVVAEVEGLR 211
+++VLS R + Q QSE V KG V G ++ G+
Sbjct: 183 NNVVLSRRAL--------LEQTQSESRTTFLNNLYKGQVRKGVVSSIVNFGAFVDLGGVD 234
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K A E++ G+++ ++ +EVD ++ R+ LS + D
Sbjct: 235 GLVHVSELSWKHIEHASEVVEVGQEVTVEILEVDLDRERVSLSLKATQEDPWQVFARTHA 294
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
IG V G V L P+GAF+ + GI GL+H+S++S V
Sbjct: 295 IGQVAPGKVTKLVPFGAFVRVADGIEGLVHISELSGKHV 333
>gi|409359262|ref|ZP_11237613.1| 30S ribosomal protein S1 [Dietzia alimentaria 72]
Length = 491
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 18/246 (7%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I
Sbjct: 19 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 75
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E V E V+ E++ D L+LS + QYE AW L+ +D VKG V+ K
Sbjct: 76 GEVVEVGDEVEALVLTKEDK-DGRLILSKKRAQYERAWGTIEDLKEKDEAVKGTVIEVVK 134
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + L +G++L K +E+D+ ++ +VLS R + +
Sbjct: 135 GGLILDI-GLRGFLPASLVEMRRVRDLLPYVGQELEAKIIELDKNRNNVVLSRRAWLEQT 193
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 194 QSAVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 253
Query: 311 GDTLKV 316
G + V
Sbjct: 254 GQEVTV 259
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/212 (28%), Positives = 102/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLLPYVGQELEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q + E QLQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSAVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHV 330
>gi|317132412|ref|YP_004091726.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
harbinense YUAN-3]
gi|315470391|gb|ADU26995.1| hydroxymethylbutenyl pyrophosphate reductase [Ethanoligenens
harbinense YUAN-3]
Length = 666
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 126/244 (51%), Gaps = 11/244 (4%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
+F +ALE+ + +V+G V VD+ K + Y+P E E+
Sbjct: 302 DFAAALEQSFKTLNVDERVRGVVVGLSPNEVQVDLGTKHAGYVPLSELTDDSTVKPEDIV 361
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
V G + E V++ N+ D +++LS R I +W+ ED +V+G V+ KGG++
Sbjct: 362 KV-GDEIELVVLRVNDQDGTVMLSKRRIDALKSWDEIVAASEEDKIVEGTVIEVIKGGLL 420
Query: 205 AEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL 262
A V G++ F+P SQ I LL + + +K +E++ + R V S R + D + +L
Sbjct: 421 ATVNGVKVFIPASQSGIPRSGDLSTLLHQPVRMKIIEINTGRKRAVGSIRAVLKDERKEL 480
Query: 263 G--------IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
IG G V+SL YGAF+D+GG++G++HVS++S R+ + V+ GDT+
Sbjct: 481 AEKFWEEAEIGKQYTGKVKSLTSYGAFVDLGGVDGMIHVSELSWSRIRHPSEVVNVGDTV 540
Query: 315 KVCL 318
V +
Sbjct: 541 NVTI 544
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
EK+ +E+G + G V + GA VD+ + E +I+H E V G
Sbjct: 482 EKFWEEAEIGKQYTGKVKSLTSYGAFVDL-GGVDGMIHVSELSWSRIRHPSEVVNV-GDT 539
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWER-CRQLQSEDVVVKGKVVGANKGGVVAEV-E 208
I N + LS + + E W+ R+ Q D+V K+V G A++
Sbjct: 540 VNVTIKDLNPETKKVSLSY-VDKGENPWDVFIREYQVGDIV-DAKIVNFMTFGAFAQIIP 597
Query: 209 GLRGFVPFSQISSKSTA---EEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G+ G + SQI+ A +EL LG+++ +K +E++E++ R+ LS R+A+A+
Sbjct: 598 GVDGLIHISQIADHHVAKPQDELELGQEVRVKIIEIEEDRKRISLSIREAVAE 650
>gi|332637853|ref|ZP_08416716.1| SSU ribosomal protein S1P [Weissella cibaria KACC 11862]
Length = 410
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 98 ELGTKVKGTVFCTDN-RGALVDIT-AKSSAYLPTQEACIHKIKHVEE--AGIVPGLKEEF 153
++G VKG V D+ R +V I A +P +E + +V +
Sbjct: 19 KVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVVV 78
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
IG ++ S +LS R ++ AWE + D +V+ V KGG+V +VEG+RGF
Sbjct: 79 STIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGF 138
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S I ++ + + G+ + K +E++ SRL+LS R + + ++ +L
Sbjct: 139 VPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSAALARVFNELS 198
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V + +GAFID+GG++GL+HVS+ISH+RV+ + VL G+ +KV
Sbjct: 199 VGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISHERVSQPSDVLSVGEDVKV 251
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 95/174 (54%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYE---LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
II N AD L+LS R + E A R S VV+GKV G ++ G+
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSAALARVFNELSVGDVVEGKVARMTNFGAFIDLGGVD 223
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLG 263
G V S+IS + ++ +G+D+ +K + +D E+ R+ LS + + ++
Sbjct: 224 GLVHVSEISHERVSQPSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWEAAASEAP 283
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G+V+ GTV+ + +GAF+++ G+ GL+HVSQISH +A+ + VL+ GD +KV
Sbjct: 284 EGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKV 337
>gi|320093717|ref|ZP_08025582.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319979338|gb|EFW10828.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 178 str.
F0338]
Length = 479
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 134/235 (57%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQV 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G++L K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGRELDAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V GTV S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LQKGQVRTGTVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 33/216 (15%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + + II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGRELDAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVV-----AEVEGLR 211
+++VLS R AW Q QSE + KG+V +V ++ G+
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQVRTGTVSSIVNFGAFVDLGGVD 229
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 230 GLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFARTHA 289
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH 298
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 290 IGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQ 325
>gi|257068664|ref|YP_003154919.1| 30S ribosomal protein S1 [Brachybacterium faecium DSM 4810]
gi|256559482|gb|ACU85329.1| SSU ribosomal protein S1P [Brachybacterium faecium DSM 4810]
Length = 493
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 135/237 (56%), Gaps = 19/237 (8%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ +P++E I KH + G + + +
Sbjct: 29 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVIPSRELSI---KHDVDPGEIVEVGD 82
Query: 152 EF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG 209
E +++ + + + L+LS + QYE AW Q++ ++ VV G+V+ KGG++ ++ G
Sbjct: 83 EIEALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDEGVVTGRVIEVVKGGLIVDI-G 141
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA------- 260
LRGF+P S + + + +G+++ K +E+D+ ++ +VLS R + ++Q+
Sbjct: 142 LRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSDFL 201
Query: 261 -QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 202 QTLQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQKVSV 258
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 103/212 (48%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G V G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGRVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 178
Query: 163 DSLVLSLRMIQYEL-AWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R E + R LQ+ + V +G V G ++ G+ G V S++
Sbjct: 179 NNVVLSRRAYLEETQSAVRSDFLQTLQKGQVREGAVSSIVNFGAFVDLGGVDGLVHVSEL 238
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL-----GIGSVVIG 270
S K +G+ + ++ ++VD ++ R+ LS KA + QL IG VV G
Sbjct: 239 SWKHIDHPSEVVEVGQKVSVEVLDVDMDRERVSLS-LKATQEDPWQLFARTHAIGEVVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 329
>gi|229058232|ref|ZP_04196620.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
gi|423509417|ref|ZP_17485948.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
gi|423594474|ref|ZP_17570505.1| ribosomal protein S1 [Bacillus cereus VD048]
gi|228720096|gb|EEL71680.1| 30S ribosomal protein S1 [Bacillus cereus AH603]
gi|401224271|gb|EJR30829.1| ribosomal protein S1 [Bacillus cereus VD048]
gi|402456708|gb|EJV88481.1| ribosomal protein S1 [Bacillus cereus HuA2-1]
Length = 382
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|453051391|gb|EME98899.1| 30S ribosomal protein S1 [Streptomyces mobaraensis NBRC 13819 = DSM
40847]
Length = 501
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVSV--GDQVEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|256394808|ref|YP_003116372.1| 30S ribosomal protein S1 [Catenulispora acidiphila DSM 44928]
gi|256361034|gb|ACU74531.1| RNA binding S1 domain protein [Catenulispora acidiphila DSM 44928]
Length = 493
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 137/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
EEF +A++ KY FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 22 EEFLAAIDLTIKY-FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 78
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G E +++ + + + L+LS + QYE AW +++ +D +V G V+
Sbjct: 79 NEVVAV--GDHIEALVLQKEDKEGRLILSKKRAQYERAWGTIEEIKEKDGIVTGTVIEVV 136
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 137 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 195
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 196 TQSEVRQNFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 255
Query: 310 PGDTLKV 316
G + V
Sbjct: 256 VGQEVTV 262
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQNFLTTLQKGQV----RSGVVSSIVNFGAFVDL 230
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + M D
Sbjct: 231 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATMEDPWQTFA 290
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+ GD + V
Sbjct: 291 RTHAIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEVPEQVVNVGDEIFV 348
>gi|422518357|ref|ZP_16594425.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
gi|313772539|gb|EFS38505.1| 30S ribosomal protein S1 [Propionibacterium acnes HL074PA1]
Length = 498
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/244 (32%), Positives = 134/244 (54%), Gaps = 23/244 (9%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 37 EAFLAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 93
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E ++ + + + L+LS + QYE AW Q++ ED VV G V+
Sbjct: 94 FEVVNV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEQIKEEDGVVTGTVIEVV 151
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G+++ K +E+D+ ++ +VL R +
Sbjct: 152 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGQEIEAKIIELDKNRNNVVLPRRAWLEQ 210
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIAT 306
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S D +++
Sbjct: 211 TQSEVRQNFLHQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 270
Query: 307 VLQP 310
V QP
Sbjct: 271 VGQP 274
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 99/212 (46%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 143 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGQEIEAKIIELDKNR 197
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VL L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 198 NNVVLPRRAWLEQTQSEVRQNFLHQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 256
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+ + ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 257 LSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFARLHQIGQIVPG 316
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+HVS+++ V
Sbjct: 317 KVTKLVPFGAFVRVEDGIEGLVHVSELAERHV 348
>gi|188586255|ref|YP_001917800.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
thermophilus JW/NM-WN-LF]
gi|179350942|gb|ACB85212.1| hydroxymethylbutenyl pyrophosphate reductase [Natranaerobius
thermophilus JW/NM-WN-LF]
Length = 705
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/263 (30%), Positives = 135/263 (51%), Gaps = 11/263 (4%)
Query: 64 FEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
FEE E T E + +E A E + G VKG V A++D+ K
Sbjct: 290 FEEQNENLNTNSDESTQESQDELMKATEDSADKLDRGQVVKGKVVKVTEDEAMIDVGYKF 349
Query: 124 SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQ 183
+P E I + + +E+ + G + + ++ ++ + L+LS + + WE+ Q
Sbjct: 350 EGSVPVNEMPIKEGESLEDL-LSEGDEIDVKVVKVDDEEGQLILSKKWADKDKQWEQLEQ 408
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVD 241
L D +K +V KGG+V ++ L+GF+P S + + + +G++L LK +E+D
Sbjct: 409 LMENDEEIKAQVTEEVKGGLVVDLGQLQGFIPASHVDIHYVPDLSKYVGEELRLKPIELD 468
Query: 242 EEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHV 293
++++VLS + + Q + + G +V GTV+ L +GAFIDIGGI+GL H+
Sbjct: 469 RSRNKIVLSQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAFIDIGGIDGLCHI 528
Query: 294 SQISHDRVADIATVLQPGDTLKV 316
SQISH R+ + L+ G+ +KV
Sbjct: 529 SQISHSRIDHPESELETGENVKV 551
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 100/221 (45%), Gaps = 25/221 (11%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKI----KHV-EEAGIVPGLKEEFVIIGENEADDSLVL 167
+G LV + ++P IH + K+V EE + P I + + + +VL
Sbjct: 425 KGGLVVDLGQLQGFIPASHVDIHYVPDLSKYVGEELRLKP--------IELDRSRNKIVL 476
Query: 168 SLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS---- 220
S + I + E + + +E +V G V G ++ G+ G SQIS
Sbjct: 477 SQKNILEQEQEEKKNKTMETITEGDIVDGTVKRLTDFGAFIDIGGIDGLCHISQISHSRI 536
Query: 221 SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLK 276
+E G+++ +K + +D E R+ LS ++A D Q G +V G V
Sbjct: 537 DHPESELETGENVKVKVLSLDPENERISLSIKEAQPDPFETFMKQYKSGDIVQGKVVRTV 596
Query: 277 PYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAFI+I G+ GL H+SQ+S D VA V+ GD + V
Sbjct: 597 NFGAFIEITPGVEGLCHISQLSDDHVAKTQDVVNEGDQVTV 637
>gi|441159123|ref|ZP_20967490.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
10970]
gi|440617222|gb|ELQ80332.1| 30S ribosomal protein S1 [Streptomyces rimosus subsp. rimosus ATCC
10970]
Length = 503
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|354613005|ref|ZP_09030941.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
gi|353222660|gb|EHB86961.1| RNA binding S1 domain protein [Saccharomonospora paurometabolica
YIM 90007]
Length = 507
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
++F +A++K Y FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 27 DDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 80
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + + L+LS + QYE AW +L+ D V G V+
Sbjct: 81 VDPAEVVAVGDAVEALVLQKEDKEGRLILSKKRAQYERAWGTIEELKERDEPVSGTVIEV 140
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 141 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLE 199
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 200 QTQSEVRSEFLNALAKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 259
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 260 EVGQEVTV 267
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 133 VSGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 187
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E L ++ V KG V G ++ G+ G V S+
Sbjct: 188 NNVVLSRRAYLEQTQSEVRSEFLNAL-AKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSE 246
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ + V+ ++ R+ LS + D Q IG +V G
Sbjct: 247 LSWKHIDHPSEVVEVGQEVTVEVLSVEMDRERVSLSLKATQEDPWRQFARTHAIGQIVPG 306
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q G + V
Sbjct: 307 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGGEVMV 353
>gi|221633021|ref|YP_002522246.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
gi|221156851|gb|ACM05978.1| 30S ribosomal protein S1 [Thermomicrobium roseum DSM 5159]
Length = 443
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 132/245 (53%), Gaps = 22/245 (8%)
Query: 93 YDFN-SELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
YD+ G V+G V D LVDI K +P++E + E + PG +
Sbjct: 37 YDYRLFRYGDVVEGEVMHVDREKILVDIGGKCEGVVPSRE--FQTLSPEELGRLRPGDRV 94
Query: 152 -EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
FV+ E++A + +LS+ + E W R +++ V++ +VV NKGG++ ++G+
Sbjct: 95 LVFVLQPEDQAGQA-ILSIDRARQEKTWRRLQEVFEAGGVIEAEVVNYNKGGLLVNLDGI 153
Query: 211 RGFVPFSQ---------ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--- 258
RGFVP SQ +S ++ ++G+ L LK +E++ ++RL+LS R+A+ +
Sbjct: 154 RGFVPASQVVAIRGGDEVSKQADMARMVGQRLKLKIIEINRHRNRLILSERQAVQEQRDA 213
Query: 259 -QAQ----LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+AQ L G G V S+ +G F+DIGG +GL+H+S+IS RV + VL+ GD
Sbjct: 214 MKAQLIETLREGETRRGRVTSIADFGVFVDIGGADGLVHLSEISWTRVKHPSEVLRVGDE 273
Query: 314 LKVCL 318
+ V +
Sbjct: 274 VDVMV 278
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 192 KGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRL 247
+G+V GV ++ G G V S+IS K +E L +G ++ + + V+ EQ ++
Sbjct: 229 RGRVTSIADFGVFVDIGGADGLVHLSEISWTRVKHPSEVLRVGDEVDVMVLSVNPEQRKI 288
Query: 248 VLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVA 302
LS R+ + Q+ +G VV GT+ L +GAF + G+ GL+HVS+++ RV
Sbjct: 289 ALSIRRTQPEPWMQVASQFQVGQVVRGTITQLASFGAFARLQEGVEGLIHVSELAGWRVE 348
Query: 303 DIATVLQPGDTLKV 316
VLQ GD + V
Sbjct: 349 HPNEVLQEGDDVIV 362
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 85/192 (44%), Gaps = 15/192 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +G V + G VDI + + E ++KH E V G + + +++ N
Sbjct: 225 GETRRGRVTSIADFGVFVDIGG-ADGLVHLSEISWTRVKHPSEVLRV-GDEVDVMVLSVN 282
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQ 218
+ LS+R Q E + Q Q VV +G + G A + EG+ G + S+
Sbjct: 283 PEQRKIALSIRRTQPEPWMQVASQFQVGQVV-RGTITQLASFGAFARLQEGVEGLIHVSE 341
Query: 219 ISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIG 270
++ E+L G D+ ++ + +D + R+ LS R+A+ S +A LG +V I
Sbjct: 342 LAGWRVEHPNEVLQEGDDVIVRVIRIDPARRRIGLSLRRALEISDEELEATLGPEAVAIK 401
Query: 271 ---TVQSLKPYG 279
+ + PYG
Sbjct: 402 QQLIARGITPYG 413
>gi|390629414|ref|ZP_10257409.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
gi|390485318|emb|CCF29757.1| 30S ribosomal protein S1 [Weissella confusa LBAE C39-2]
Length = 410
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 98 ELGTKVKGTVFCTDN-RGALVDIT-AKSSAYLPTQEACIHKIKHVEE--AGIVPGLKEEF 153
++G VKG V D+ R +V I A +P +E + +V +
Sbjct: 19 KVGDVVKGEVLAIDDARQVIVGIEGAGVEGVIPMRELTADRDANVNDLVKVGDVLDLVVV 78
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
IG ++ S +LS R ++ AWE + D +V+ V KGG+V +VEG+RGF
Sbjct: 79 STIGSDKEGGSYLLSKRRLEARRAWEEIASKHNVDDIVEAPVTQVVKGGLVVDVEGVRGF 138
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
VP S I ++ + + G+ + K +E++ SRL+LS R + + +++ L
Sbjct: 139 VPASMIENRFVQDLNQYKGQTIRAKIIEINAADSRLILSRRDVLNEERSEALSRVFNELS 198
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G VV G V + +GAFID+GG++GL+HVS+ISH+RV+ + VL G+ +KV
Sbjct: 199 VGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISHERVSQPSDVLSVGEEVKV 251
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 94/174 (54%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLR 211
II N AD L+LS R + E E ++ +E VV+GKV G ++ G+
Sbjct: 164 IIEINAADSRLILSRRDVLNEERSEALSRVFNELSVGDVVEGKVARMTNFGAFIDLGGVD 223
Query: 212 GFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI--- 264
G V S+IS + ++ +G+++ +K + +D E+ R+ LS +
Sbjct: 224 GLVHVSEISHERVSQPSDVLSVGEEVKVKVLGLDPEKERISLSIKATQPGPWEAAAAEAP 283
Query: 265 -GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G+V+ GTV+ + +GAF+++ G+ GL+HVSQISH +A+ + VL+ GD +KV
Sbjct: 284 EGTVLEGTVKRVVDFGAFVEVFPGVEGLVHVSQISHKHIANPSDVLKAGDKVKV 337
>gi|429199551|ref|ZP_19191302.1| 30S ribosomal protein S1 [Streptomyces ipomoeae 91-03]
gi|428664752|gb|EKX64024.1| 30S ribosomal protein S1 [Streptomyces ipomoeae 91-03]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|395775872|ref|ZP_10456387.1| 30S ribosomal protein S1 [Streptomyces acidiscabies 84-104]
Length = 501
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|427391803|ref|ZP_18886027.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
gi|425731770|gb|EKU94583.1| 30S ribosomal protein S1 [Actinobaculum massiliae ACS-171-V-Col2]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 132/235 (56%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GT+ D+ L+DI K+ +P++E I ++ V E
Sbjct: 34 KY-FND--GDIVEGTIVKVDHDEVLLDIGYKTEGVIPSKELSIKHDVDPDDVVEVGDTIE 90
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
V+ E++ + L+LS + QYE AW++ +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 91 ALVLQKEDK-EGRLLLSKKRAQYERAWKQIEKIKEEDGVVTGSVIEVVKGGLILDI-GLR 148
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G++L K +E+D+ ++ +VLS R + ++Q+Q
Sbjct: 149 GFLPASLVEMRRVRDLQPYVGRELEAKVIELDKNRNNVVLSRRAWLEETQSQVRADFLAG 208
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G + G V S+ +GAF+D+GG++GL+HVS++S + + V+ G + V
Sbjct: 209 LHKGQIREGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVTVGQKVNV 263
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 108/232 (46%), Gaps = 29/232 (12%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E +I ++
Sbjct: 129 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKVIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA---------EVEGLRGF 213
+++VLS R AW Q Q + G G + GVV+ ++ G+ G
Sbjct: 184 NNVVLSRR------AWLEETQSQVRADFLAGLHKGQIREGVVSSIVNFGAFVDLGGVDGL 237
Query: 214 VPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G+ + ++ ++VD ++ R+ LS + D IG
Sbjct: 238 VHVSELSWKHIDHPSEVVTVGQKVNVEVLDVDLDRERVSLSLKATQEDPWQSFARTHAIG 297
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VV G V + P+GAF+ + GI GL+H+S+++ V V++ G+ + V
Sbjct: 298 QVVPGKVTKIVPFGAFVRVEDGIEGLVHISELASHHVDTPDEVVKVGEDIFV 349
>gi|329940857|ref|ZP_08290137.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
gi|329300151|gb|EGG44049.1| 30S ribosomal protein S1 [Streptomyces griseoaurantiacus M045]
Length = 499
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|398786835|ref|ZP_10549439.1| 30S ribosomal protein S1 [Streptomyces auratus AGR0001]
gi|396993390|gb|EJJ04461.1| 30S ribosomal protein S1 [Streptomyces auratus AGR0001]
Length = 506
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|269836527|ref|YP_003318755.1| RNA binding S1 domain-containing protein [Sphaerobacter
thermophilus DSM 20745]
gi|269785790|gb|ACZ37933.1| RNA binding S1 domain protein [Sphaerobacter thermophilus DSM
20745]
Length = 459
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 127/237 (53%), Gaps = 21/237 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE-EFVIIGE 158
G ++G + D LVDI +KS +P +E + E A + G FV+ E
Sbjct: 48 GDVIEGQIMHVDRDELLVDIGSKSEGIIPARE--FSTLTDEERAALSVGDHVLVFVVQAE 105
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N+ + VLS+ + E +W R +++ +++ +V NKGG++ ++G+RGFVP SQ
Sbjct: 106 NQ-EGQAVLSIDRARQEKSWRRLQEIYEAGEIIEAEVTNYNKGGLLVNLDGVRGFVPASQ 164
Query: 219 I---------SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQ 261
+ S ++ L+G L LK +E++ ++RL+LS R+A+ + + +
Sbjct: 165 VTEIRGGDDSSKQADMARLIGSKLSLKIIEINRHRNRLILSERQAIQERRDVMKERLIEE 224
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L G G V S+ +GAF+DIGG +GL+H+S++S RV + VL+ G+ + V +
Sbjct: 225 LTEGETRRGRVTSITDFGAFVDIGGADGLVHLSELSWSRVKHPSEVLKVGEEVDVYV 281
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%), Gaps = 12/179 (6%)
Query: 148 GLKEEFVIIGENEADDSLVLSLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
G K II N + L+LS R + ++ ER + +E +G+V G
Sbjct: 185 GSKLSLKIIEINRHRNRLILSERQAIQERRDVMKERLIEELTEGETRRGRVTSITDFGAF 244
Query: 205 AEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G G V S++S K +E L +G+++ + + ++ E+ ++ LS ++ + +
Sbjct: 245 VDIGGADGLVHLSELSWSRVKHPSEVLKVGEEVDVYVLGINAEEKKIALSIKRTQPEPWS 304
Query: 261 QLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
++ +G +V+GTV L +GAF I GI GL+HVS++S R+ V+ G L
Sbjct: 305 RVAMKYEVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSELSEQRIGHPRQVVSEGQDL 363
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 8/161 (4%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +G V + GA VDI + + E ++KH E V G + + ++G N
Sbjct: 228 GETRRGRVTSITDFGAFVDIGG-ADGLVHLSELSWSRVKHPSEVLKV-GEEVDVYVLGIN 285
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ + LS++ Q E W R +V G V G A +E G+ G + S+
Sbjct: 286 AEEKKIALSIKRTQPE-PWSRVAMKYEVGQLVLGTVTQLANFGAFARIEDGIEGLIHVSE 344
Query: 219 ISSKSTAEELL----GKDLPLKFVEVDEEQSRLVLSNRKAM 255
+S + G+DL L+ + +D + R+ LS R+A+
Sbjct: 345 LSEQRIGHPRQVVSEGQDLILRIIRIDPARRRMGLSLRRAL 385
>gi|297198957|ref|ZP_06916354.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
gi|197711117|gb|EDY55151.1| ribosomal protein S1 [Streptomyces sviceus ATCC 29083]
Length = 503
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|386839556|ref|YP_006244614.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099857|gb|AEY88741.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792849|gb|AGF62898.1| 30S ribosomal protein S1 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 496
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|291450767|ref|ZP_06590157.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
gi|359144624|ref|ZP_09178558.1| 30S ribosomal protein S1 [Streptomyces sp. S4]
gi|421738888|ref|ZP_16177225.1| ribosomal protein S1 [Streptomyces sp. SM8]
gi|291353716|gb|EFE80618.1| 30S ribosomal protein S1 [Streptomyces albus J1074]
gi|406692679|gb|EKC96363.1| ribosomal protein S1 [Streptomyces sp. SM8]
Length = 504
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|291440269|ref|ZP_06579659.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
gi|291343164|gb|EFE70120.1| 30S ribosomal protein S1 [Streptomyces ghanaensis ATCC 14672]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|21220480|ref|NP_626259.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
gi|289772280|ref|ZP_06531658.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
gi|5689891|emb|CAB52054.1| 30S ribosomal protein S1 [Streptomyces coelicolor A3(2)]
gi|289702479|gb|EFD69908.1| 30S ribosomal protein S1 [Streptomyces lividans TK24]
Length = 502
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|418474377|ref|ZP_13043878.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
gi|371545016|gb|EHN73675.1| 30S ribosomal protein S1 [Streptomyces coelicoflavus ZG0656]
Length = 504
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|423676686|ref|ZP_17651625.1| ribosomal protein S1 [Bacillus cereus VDM062]
gi|401307807|gb|EJS13232.1| ribosomal protein S1 [Bacillus cereus VDM062]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|345849206|ref|ZP_08802220.1| 30S ribosomal protein S1 [Streptomyces zinciresistens K42]
gi|345639266|gb|EGX60759.1| 30S ribosomal protein S1 [Streptomyces zinciresistens K42]
Length = 498
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|302550706|ref|ZP_07303048.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
gi|302468324|gb|EFL31417.1| ribosomal protein S1 [Streptomyces viridochromogenes DSM 40736]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|294628772|ref|ZP_06707332.1| ribosomal protein S1 [Streptomyces sp. e14]
gi|292832105|gb|EFF90454.1| ribosomal protein S1 [Streptomyces sp. e14]
Length = 496
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|455646857|gb|EMF25877.1| 30S ribosomal protein S1 [Streptomyces gancidicus BKS 13-15]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|443628333|ref|ZP_21112687.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
Tue57]
gi|443338157|gb|ELS52445.1| putative 30S ribosomal protein S1 [Streptomyces viridochromogenes
Tue57]
Length = 498
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|30019646|ref|NP_831277.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 14579]
gi|229126911|ref|ZP_04255922.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
gi|296502167|ref|YP_003663867.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
gi|29895190|gb|AAP08478.1| SSU ribosomal protein S1P [Bacillus cereus ATCC 14579]
gi|228656511|gb|EEL12338.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-Cer4]
gi|296323219|gb|ADH06147.1| 30S ribosomal protein S1 [Bacillus thuringiensis BMB171]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 132/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV+VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVIVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|383643400|ref|ZP_09955806.1| 30S ribosomal protein S1 [Streptomyces chartreusis NRRL 12338]
Length = 498
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|163939412|ref|YP_001644296.1| 30S ribosomal protein S1 [Bacillus weihenstephanensis KBAB4]
gi|229132404|ref|ZP_04261258.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
gi|423366663|ref|ZP_17344096.1| ribosomal protein S1 [Bacillus cereus VD142]
gi|423524601|ref|ZP_17501074.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
gi|423667281|ref|ZP_17642310.1| ribosomal protein S1 [Bacillus cereus VDM034]
gi|163861609|gb|ABY42668.1| RNA binding S1 domain protein [Bacillus weihenstephanensis KBAB4]
gi|228651110|gb|EEL07091.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST196]
gi|401087142|gb|EJP95351.1| ribosomal protein S1 [Bacillus cereus VD142]
gi|401170444|gb|EJQ77685.1| ribosomal protein S1 [Bacillus cereus HuA4-10]
gi|401304032|gb|EJS09590.1| ribosomal protein S1 [Bacillus cereus VDM034]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|408532678|emb|CCK30852.1| 30S ribosomal protein S1 [Streptomyces davawensis JCM 4913]
Length = 498
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|423481483|ref|ZP_17458173.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
gi|401144691|gb|EJQ52218.1| ribosomal protein S1 [Bacillus cereus BAG6X1-2]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 129/234 (55%), Gaps = 24/234 (10%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G V G+V + + LV++ K+ +P E A +H +E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 157 GENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RG
Sbjct: 72 IIKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVRG 126
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI--- 264
F+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 127 FIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSL 186
Query: 265 --GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 187 KEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G ++ G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDILEGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|228907229|ref|ZP_04071090.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
gi|228852450|gb|EEM97243.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 200]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K +E+D E++R++LS++ + DSQ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIIELDREKNRVILSHKAVVELELDSQKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G II + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIIELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSQKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|302561209|ref|ZP_07313551.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
gi|302478827|gb|EFL41920.1| ribosomal protein S1 [Streptomyces griseoflavus Tu4000]
Length = 497
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVAV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|403713637|ref|ZP_10939721.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
gi|403212049|dbj|GAB94404.1| 30S ribosomal protein S1 [Kineosphaera limosa NBRC 100340]
Length = 489
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 130/234 (55%), Gaps = 18/234 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG--IVPGLKEE 152
FN G V+G + D L+DI K+ +P++E I KH + G + G + E
Sbjct: 32 FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPGEVVTVGDEVE 86
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRG
Sbjct: 87 ALVLQKEDKEGRLILSKKRAQYERAWGTIEKVKEEDGVVTGTVIEVVKGGLILDI-GLRG 145
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------L 262
F+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++ L
Sbjct: 146 FLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLREL 205
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 206 QKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 259
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ R+LQ V G V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSEVRTTFLRELQKGQVR-SGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG VV G
Sbjct: 239 LSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIGQVVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 299 KVTKLVPFGAFVRVDDGIEGLVHISELAERHV 330
>gi|228990609|ref|ZP_04150574.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
gi|228769135|gb|EEM17733.1| 30S ribosomal protein S1 [Bacillus pseudomycoides DSM 12442]
Length = 382
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 24/234 (10%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G V G+V + + LV++ K+ +P E A +H +E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVKLDQNLELK 71
Query: 157 GENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
DD LVLS R + E AW E+ + DV VK V GG+V ++ G+RG
Sbjct: 72 VIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIV----NGGLVVDL-GVRG 126
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P S + + + GK L +K VE+D E++R++LS++ + ++ + L
Sbjct: 127 FIPASLVEMHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVEQELESKKKEAISSL 186
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++G ++GL+H+SQISHDRV + VL G ++KV
Sbjct: 187 KEGDVVEGTVQRLTDFGAFVNVGNVDGLVHISQISHDRVEQPSDVLTQGQSVKV 240
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEMHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V + G V SQIS +
Sbjct: 170 VVEQELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGNVDGLVHISQISHDRVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
++L G+ + +K + VD + R+ LS + A + A++ G + G V+ + +GA
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|379058793|ref|ZP_09849319.1| 30S ribosomal protein S1 [Serinicoccus profundi MCCC 1A05965]
Length = 486
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/246 (31%), Positives = 137/246 (55%), Gaps = 17/246 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH-VEE 142
EE +A++ N G V+G + D L+DI K+ +P++E I KH V+
Sbjct: 22 EELLAAIDATIKNFNDGDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELAI---KHDVDP 78
Query: 143 AGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ +V G + E +++ + + + L+LS + QYE AW +++ ED VV G V+ KG
Sbjct: 79 SEVVTVGDEVEALVLQKEDKEGRLILSKKRAQYERAWGSIEKIKEEDGVVTGTVIEVVKG 138
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q
Sbjct: 139 GLILDI-GLRGFLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQ 197
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQP 310
+ +L G V G V S+ +GAF+D+ GG++GL+HVS++S + V++
Sbjct: 198 SEVRTTFLKELAKGQVRSGVVSSIVNFGAFVDLGGGVDGLVHVSELSWKHIDHPGEVVEV 257
Query: 311 GDTLKV 316
GD + V
Sbjct: 258 GDEVTV 263
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 101/218 (46%), Gaps = 30/218 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV----------EGLRG 212
+++VLS R AW Q + +K G + GVV+ + G+ G
Sbjct: 183 NNVVLSRR------AWLEQTQSEVRTTFLKELAKGQVRSGVVSSIVNFGAFVDLGGGVDG 236
Query: 213 FVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
V S++S K +G ++ ++ ++VD ++ R+ LS + + D I
Sbjct: 237 LVHVSELSWKHIDHPGEVVEVGDEVTVEVLDVDMDRERVSLSLKATLEDPWQTFARTHAI 296
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
G VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 297 GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHV 334
>gi|319950983|ref|ZP_08024854.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
gi|319435365|gb|EFV90614.1| 30S ribosomal protein S1 [Dietzia cinnamea P4]
Length = 490
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I
Sbjct: 19 EDFLAAIDATIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 75
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E V E V+ E++ D L+LS + QYE AW +L+ +D VKG V+ K
Sbjct: 76 GEVVEVGDEVEALVLTKEDK-DGRLILSKKRAQYERAWGTIEELKEKDEAVKGTVIEVVK 134
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + L +G++L K +E+D+ ++ +VLS R + +
Sbjct: 135 GGLILDI-GLRGFLPASLVEMRRVRDLLPYVGQELEAKIIELDKNRNNVVLSRRAWLEQT 193
Query: 259 QA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q+ +L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 194 QSAVRSEFLHRLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 253
Query: 311 GDTLKV 316
G + V
Sbjct: 254 GQEVTV 259
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 125 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLLPYVGQELEAKIIELDKNR 179
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q + E +LQ V KG V G ++ G+ G V S+
Sbjct: 180 NNVVLSRRAWLEQTQSAVRSEFLHRLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 238
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 239 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 298
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 299 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVSVGDDAMV 345
>gi|302533839|ref|ZP_07286181.1| ribosomal protein S1 [Streptomyces sp. C]
gi|302442734|gb|EFL14550.1| ribosomal protein S1 [Streptomyces sp. C]
Length = 504
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 24 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 80
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 81 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 138
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 139 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 197
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 198 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 257
Query: 310 PGDTLKV 316
G + V
Sbjct: 258 VGQEVTV 264
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 130 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 184
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 185 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 232
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 233 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 292
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 293 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 350
>gi|284991621|ref|YP_003410175.1| RNA binding S1 domain-containing protein [Geodermatophilus obscurus
DSM 43160]
gi|284064866|gb|ADB75804.1| RNA binding S1 domain protein [Geodermatophilus obscurus DSM 43160]
Length = 488
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 21 TAEDFLAAIDQTIKY-FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW + D VV G V+
Sbjct: 78 DPNEVVSV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEAKKEADEVVTGTVIE 135
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R+ +
Sbjct: 136 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRQWL 194
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 195 EQTQSEVRSEFLNKLAKGQVRTGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 254
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 255 VEVGQEVTV 263
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +L ++ V G V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRQWLEQTQSEVRSEFLNKL-AKGQVRTGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHQIGQVVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEILV 349
>gi|212638920|ref|YP_002315440.1| 30S ribosomal protein S1 [Anoxybacillus flavithermus WK1]
gi|212560400|gb|ACJ33455.1| Ribosomal protein S1 [Anoxybacillus flavithermus WK1]
Length = 386
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 140/252 (55%), Gaps = 28/252 (11%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKH 139
FT+EE + + E+G VKG V +++ L+D+ +K +P E H
Sbjct: 7 FTMEEMNQVDVRV---YEVGDTVKGQVTKVEDKQVLIDVEGSKLVGIIPISELSSL---H 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERC-RQL---QSEDVVVKGKV 195
+E+A V + + V + D++L+LS + E AWE R+L + DVVVK V
Sbjct: 61 IEKASDVLSVGDAVVAKVKKVEDEALILSKKAADAEKAWEELERKLANGDTFDVVVKDIV 120
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAEELL---GKDLPLKFVEVDEEQSRLVLSNR 252
KGG+VA+V G+R F+P S + K E+ G+ L +K VE+D E++R+VLS+R
Sbjct: 121 ----KGGLVADV-GVRAFIPASLVE-KDFVEDFTDYKGRTLTVKVVELDREKNRVVLSHR 174
Query: 253 KAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+ + +A L +G V+ GTV + +GAF++IG ++GL+H+SQ+SH RV
Sbjct: 175 AVVEEEEASKKKAALQSLQVGQVLEGTVVRMTNFGAFVNIGEVDGLVHISQLSHARVDHP 234
Query: 305 ATVLQPGDTLKV 316
+ V++ GD +KV
Sbjct: 235 SDVVKEGDVVKV 246
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 88/167 (52%), Gaps = 18/167 (10%)
Query: 165 LVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS- 220
+VLS R +++ E A ++ LQS V V++G VV G + + G V SQ+S
Sbjct: 169 VVLSHRAVVEEEEASKKKAALQSLQVGQVLEGTVVRMTNFGAFVNIGEVDGLVHISQLSH 228
Query: 221 ------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIG 270
S E G + +K + +DEE R+ LS + A+ + ++ G V+ G
Sbjct: 229 ARVDHPSDVVKE---GDVVKVKVLAIDEESGRVSLSMKAALPAPWDGIEQKIKEGDVLEG 285
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TV+ L P+GAF+++ G+ GL+H+SQIS + VL+ GD +KV
Sbjct: 286 TVKRLAPFGAFVEVFPGVEGLVHISQISTKHIGAPHEVLKEGDVVKV 332
>gi|386387073|ref|ZP_10072140.1| 30S ribosomal protein S1 [Streptomyces tsukubaensis NRRL18488]
gi|385665461|gb|EIF89137.1| 30S ribosomal protein S1 [Streptomyces tsukubaensis NRRL18488]
Length = 496
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 22 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 78
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 79 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 136
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 137 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELDAKIIELDKNRNNVVLSRRAWLEQ 195
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 196 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 255
Query: 310 PGDTLKV 316
G + V
Sbjct: 256 VGQEVTV 262
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + + II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELDAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 230
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 231 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 290
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 291 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 348
>gi|309810340|ref|ZP_07704176.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
gi|308435705|gb|EFP59501.1| putative ribosomal protein S1 [Dermacoccus sp. Ellin185]
Length = 499
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 129/234 (55%), Gaps = 18/234 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP--GLKEE 152
FN G V+G + D L+DI K+ +P++E I KH + G V G E
Sbjct: 31 FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHDVDPGEVVKVGDDVE 85
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + + + L+LS + QYE AW Q++ +D VV G V+ KGG++ ++ GLRG
Sbjct: 86 ALVLQKEDKEGRLILSKKRAQYERAWGTIEQIKEDDGVVTGTVIEVVKGGLILDI-GLRG 144
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------L 262
F+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++ L
Sbjct: 145 FLPASLVEMRRVRDLQPYVGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTTFLKEL 204
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 QKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 258
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 102/217 (47%), Gaps = 29/217 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKEIEAKIIELDKNR 178
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA---------EVEGLRGF 213
+++VLS R AW Q + +K G + GVV+ ++ G+ G
Sbjct: 179 NNVVLSRR------AWLEQTQSEVRTTFLKELQKGQVRSGVVSSIVNFGAFVDLGGVDGL 232
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G+++ ++ ++VD ++ R+ LS + D IG
Sbjct: 233 VHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHAIG 292
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 293 QVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAERHV 329
>gi|403667479|ref|ZP_10932784.1| 30S ribosomal protein S1 [Kurthia sp. JC8E]
Length = 392
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 22/226 (9%)
Query: 109 CTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII--------GENE 160
DNR + AK +P E HVE+A + +EF ++ ++E
Sbjct: 26 VEDNRVIVSIPNAKYDGIIPISELSS---LHVEKASDAVSVGDEFEVVVKKVEEPSEDSE 82
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220
+ VLS R + AW+ ++ V++ +V KGG+V ++ G+RGFVP S +
Sbjct: 83 GTGNYVLSKRQVDAVAAWDVLKKQFESGEVIESEVKDVVKGGLVIDL-GVRGFVPASLVE 141
Query: 221 SK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI--------GSVVIG 270
T ++ GK L K VE+D+E++RL+LS+R + D +A+ + G ++ G
Sbjct: 142 DYFVETFDDYKGKTLQFKIVEMDQEKNRLILSHRAVLEDLKAEKKVEVINTIKEGDILTG 201
Query: 271 TVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TVQ + +GAF+DIGG++GL+H+SQ++H+ V+++ VL G ++V
Sbjct: 202 TVQRIATFGAFVDIGGVDGLVHISQVAHEHVSNVYDVLSEGQEVQV 247
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 94/177 (53%), Gaps = 12/177 (6%)
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVE 208
+F I+ ++ + L+LS R + +L E+ ++ + E ++ G V G ++
Sbjct: 157 QFKIVEMDQEKNRLILSHRAVLEDLKAEKKVEVINTIKEGDILTGTVQRIATFGAFVDIG 216
Query: 209 GLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QA 260
G+ G V SQ++ + S ++L G+++ +K + VD R+ LS + +A +
Sbjct: 217 GVDGLVHISQVAHEHVSNVYDVLSEGQEVQVKVLSVDPVNERISLSIKDTLAGPWEGIEE 276
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GSV+ G V+ L +GAF+++ G+ GL+H+SQI+H + VL+ G ++V
Sbjct: 277 KAAKGSVLTGVVRRLVTFGAFVEVFPGVEGLVHISQIAHKHINTPHEVLEEGQEVQV 333
>gi|452990290|emb|CCQ98504.1| RNA degradation presenting factor (ribosomal protein S1 homolog)
[Clostridium ultunense Esp]
Length = 440
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 121/229 (52%), Gaps = 12/229 (5%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G + G V + + AL+D+ K A LP E I+ +E+ + G + E +
Sbjct: 68 QVGDILTGKVSRIEEKQALIDVGFKYEAILPISEVSSLHIEKIEDV-LHLGDEIEVKVKK 126
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
N D LV+S R + E AWE Q + +V KGG+VA+V GLRGF+P S
Sbjct: 127 FNPEKDELVVSKRAVAAEKAWEVLSQRFENGETFETTIVDVVKGGLVADV-GLRGFIPAS 185
Query: 218 QISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSV 267
Q+ + + GK L +K +E+D E +R++LS+R + + +L G V
Sbjct: 186 QVERNYVEDFSDYKGKPLKVKVIELDRENNRVILSHRAVLEEEAERRKKEVLNRLEAGQV 245
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V G V+ + +GAF+D+GG++GL+H+S++S D V + GD +KV
Sbjct: 246 VEGRVERITDFGAFVDLGGVDGLIHISELSWDHVEKATDAVSVGDIVKV 294
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
VV+G+V G ++ G+ G + S++S K+T +G + +K ++VD E
Sbjct: 245 VVEGRVERITDFGAFVDLGGVDGLIHISELSWDHVEKATDAVSVGDIVKVKVLKVDRENE 304
Query: 246 RLVLS---NRKAMADSQAQ-LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + + AQ + G VV G V+ L +GAF+++ G+ GL+HVSQIS R
Sbjct: 305 RISLSLKATQPSPWEKAAQSIKPGDVVKGIVRRLPSFGAFVELMPGVEGLVHVSQISRKR 364
Query: 301 VADIATVLQPGDTLKV 316
V VL+ G ++V
Sbjct: 365 VGTPGEVLKEGQEVEV 380
>gi|296393091|ref|YP_003657975.1| RNA binding S1 domain-containing protein [Segniliparus rotundus DSM
44985]
gi|296180238|gb|ADG97144.1| RNA binding S1 domain protein [Segniliparus rotundus DSM 44985]
Length = 482
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 142/260 (54%), Gaps = 22/260 (8%)
Query: 73 TAPMEGVS--FTLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
T+P+ V+ +EE A++ KY FN G V GT+ + L+DI K+ +
Sbjct: 7 TSPIVAVNDVGNIEELLKAIDATIKY-FND--GDIVSGTIVKVERDEVLLDIGYKTEGVI 63
Query: 128 PTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
P++E I H + E + G E +++ + + + L+LS + QYE AW +
Sbjct: 64 PSRELSIKHDVDPSEVVSV--GDVVEALVLTKEDKEGRLILSKKRAQYERAWGEVEAHKE 121
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
+D VKG V+ KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ +
Sbjct: 122 KDESVKGTVIEVVKGGLIVDI-GLRGFLPASLVDMRRVRDLQPYIGKEIETKIIELDKNR 180
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+ +VLS R + +Q++ L G++ G + S+ +GAF+D+GG++GL+HVS++
Sbjct: 181 NNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIKKGVISSIVNFGAFVDLGGVDGLVHVSEL 240
Query: 297 SHDRVADIATVLQPGDTLKV 316
S + + V++ GD + V
Sbjct: 241 SWKHIDHPSEVVKVGDEVTV 260
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 108/226 (47%), Gaps = 19/226 (8%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
++ A + + + E VKGTV G +VDI + +LP A + ++ V +
Sbjct: 108 QYERAWGEVEAHKEKDESVKGTVIEVVKGGLIVDIGLR--GFLP---ASLVDMRRVRDLQ 162
Query: 145 IVPGLKEEFVIIGENEADDSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
G + E II ++ +++VLS L Q E+ E +LQ ++ KG +
Sbjct: 163 PYIGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIK-KGVISSIVN 221
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G V S++S K +G ++ ++ ++VD + R+ LS +
Sbjct: 222 FGAFVDLGGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQE 281
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
D IG +V G V L P+GAF+ +G GI GL+H+S++S
Sbjct: 282 DPWRHFARTHAIGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELS 327
>gi|425734868|ref|ZP_18853185.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
gi|425480804|gb|EKU47968.1| 30S ribosomal protein S1 [Brevibacterium casei S18]
Length = 492
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 138/250 (55%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D LVDI K+ + ++E I K
Sbjct: 21 TAEDFLAAVDETIKY-FND--GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSI---K 74
Query: 139 HVEEAGIVPGLKE--EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + + E +++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 75 HDVDPGEVVEVGDPIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEEDGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQQVEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S +
Sbjct: 194 LEQTQSEVRHDFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPGE 253
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 254 VVTVGDEVTV 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 99/208 (47%), Gaps = 19/208 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQVEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ + + LQ V G V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRHDFLQTLQKGQVR-PGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 243 LSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHVIGQIVPG 302
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V L P+GAF+ + GI GL+H+S+++
Sbjct: 303 KVTKLVPFGAFVRVEDGIEGLVHISELA 330
>gi|440702750|ref|ZP_20883876.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
gi|440275576|gb|ELP63980.1| 30S ribosomal protein S1 [Streptomyces turgidiscabies Car8]
Length = 501
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|29832775|ref|NP_827409.1| 30S ribosomal protein S1 [Streptomyces avermitilis MA-4680]
gi|29609895|dbj|BAC73944.1| putative ribosomal protein S1 [Streptomyces avermitilis MA-4680]
Length = 501
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|408790528|ref|ZP_11202146.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
gi|408520075|gb|EKK20169.1| SSU ribosomal protein S1p [Lactobacillus florum 2F]
Length = 405
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 65/171 (38%), Positives = 103/171 (60%), Gaps = 10/171 (5%)
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS+R ++ W+ + +S+D + KV KGG+V +G+RGF+P
Sbjct: 82 IGDDKENGSYLLSVRRLEALKIWDEIKDKESKDENITVKVTRPVKGGLVVNADGVRGFIP 141
Query: 216 FSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIG 265
S I+ S + G++L +K +EV E++RL+LS+R ++ Q L G
Sbjct: 142 ASMITDHFVSDLNQYKGQELEVKIIEVVPEENRLILSHRAIAEKNRKQAREEIMNNLAAG 201
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VV GTV L +GAFID+GGI+GL+H+S+IS+D V A VL G+ +KV
Sbjct: 202 DVVEGTVARLTNFGAFIDLGGIDGLVHISEISYDHVNKAADVLSVGEKVKV 252
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 92/169 (54%), Gaps = 22/169 (13%)
Query: 165 LVLSLRMIQYELAWERCRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGFVPF 216
L+LS R I E+ R+ E++ VV+G V G ++ G+ G V
Sbjct: 175 LILSHRAIA-----EKNRKQAREEIMNNLAAGDVVEGTVARLTNFGAFIDLGGIDGLVHI 229
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRK----AMADSQAQLGIGSVV 268
S+IS + A ++L G+ + +K + V+ E+ R+ LS ++ D + + +GSV+
Sbjct: 230 SEISYDHVNKAADVLSVGEKVKVKVLSVEPERDRISLSIKQLQPGPWDDIEEKAPVGSVL 289
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+ L +GAF+++ G+ GL+H+SQISH+ + + VL+ G ++V
Sbjct: 290 DGTVKRLVDFGAFVEVFAGVEGLVHISQISHEHIDKPSDVLKSGQKIQV 338
>gi|254391555|ref|ZP_05006755.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
gi|294812024|ref|ZP_06770667.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
gi|326440254|ref|ZP_08214988.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
gi|197705242|gb|EDY51054.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
gi|294324623|gb|EFG06266.1| 30S ribosomal protein S1 [Streptomyces clavuligerus ATCC 27064]
Length = 496
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 22 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 78
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 79 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 136
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 137 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 195
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 196 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 255
Query: 310 PGDTLKV 316
G + V
Sbjct: 256 VGQEVTV 262
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 182
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 183 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 230
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 231 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 290
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 291 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 348
>gi|229820681|ref|YP_002882207.1| 30S ribosomal protein S1 [Beutenbergia cavernae DSM 12333]
gi|229566594|gb|ACQ80445.1| RNA binding S1 domain protein [Beutenbergia cavernae DSM 12333]
Length = 488
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 136/246 (55%), Gaps = 18/246 (7%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
E+F +A++ KY FN G V+GT+ D L+DI K+ + ++E I
Sbjct: 23 EDFLAAIDETIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDP 79
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
EE + G + E +++ + + + L+LS + QYE AW +++ ED VV G V+ K
Sbjct: 80 EEV-VSVGERVEALVLQKEDKEGRLLLSKKRAQYERAWGTIEKIKEEDGVVTGTVIEVVK 138
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +
Sbjct: 139 GGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQT 197
Query: 259 Q--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
Q A L G + G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 198 QSEVRSTFLATLQKGQIRNGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEV 257
Query: 311 GDTLKV 316
G + V
Sbjct: 258 GQEVTV 263
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 98/219 (44%), Gaps = 41/219 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+++VLS R AW Q QSE + KG++ + GVV+ + FV
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRSTFLATLQKGQI----RNGVVSSIVNFGAFVDL 231
Query: 217 SQISSKSTAEELLGK--DLPLKFVEVDEE-----------QSRLVLSNRKAMADSQAQLG 263
+ EL K D P + VEV +E + R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVELDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 292 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 330
>gi|456389923|gb|EMF55318.1| rpsA protein [Streptomyces bottropensis ATCC 25435]
Length = 498
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|290961257|ref|YP_003492439.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
gi|260650783|emb|CBG73900.1| 30S ribosomal protein S1 [Streptomyces scabiei 87.22]
Length = 498
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|145295496|ref|YP_001138317.1| 30S ribosomal protein S1 [Corynebacterium glutamicum R]
gi|140845416|dbj|BAF54415.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 486
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 138/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+G V D L+DI K+ +P++E I H +
Sbjct: 16 SAEDFLAAIDATIKY-FND--GDIVEGIVVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 72
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + + +++ + + + L+LS + QYE AW +L+ +D V G V+
Sbjct: 73 DPDEVVEV--GDQIDALVLTKEDKEGRLILSKKRAQYERAWGAIEELKEKDEPVTGTVIE 130
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R +
Sbjct: 131 VVKGGLIIDI-GLRGFLPASLVEMRRVRDLDPYIGQELEAKIIELDKNRNNVVLSRRAFL 189
Query: 256 ADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 190 EQTQSEVRSEFLHQLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 249
Query: 308 LQPGDTLKV 316
+ GD + V
Sbjct: 250 VTVGDEVTV 258
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 59/212 (27%), Positives = 101/212 (47%), Gaps = 19/212 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 124 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLDPYIGQELEAKIIELDKNR 178
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 179 NNVVLSRRAFLEQTQSEVRSEFLHQLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 237
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D +G +V G
Sbjct: 238 LSWKHIDHPSEVVTVGDEVTVEVLDVDLDRERVSLSLKATQEDPWRVFARNHAVGQIVPG 297
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 298 KVTKLVPFGAFVRVEEGIEGLVHISELAQRHV 329
>gi|206974887|ref|ZP_03235802.1| ribosomal protein S1 [Bacillus cereus H3081.97]
gi|229195798|ref|ZP_04322558.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
gi|423371578|ref|ZP_17348918.1| ribosomal protein S1 [Bacillus cereus AND1407]
gi|423606699|ref|ZP_17582592.1| ribosomal protein S1 [Bacillus cereus VD102]
gi|206746906|gb|EDZ58298.1| ribosomal protein S1 [Bacillus cereus H3081.97]
gi|228587695|gb|EEK45753.1| 30S ribosomal protein S1 [Bacillus cereus m1293]
gi|401101289|gb|EJQ09279.1| ribosomal protein S1 [Bacillus cereus AND1407]
gi|401241524|gb|EJR47912.1| ribosomal protein S1 [Bacillus cereus VD102]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V GTV + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGTVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+D LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A +G G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|408677342|ref|YP_006877169.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
gi|328881671|emb|CCA54910.1| SSU ribosomal protein S1p [Streptomyces venezuelae ATCC 10712]
Length = 503
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 25 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 81
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 82 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 139
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 140 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 198
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 199 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 258
Query: 310 PGDTLKV 316
G + V
Sbjct: 259 VGQEVTV 265
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 131 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 185
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 186 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 233
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 234 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 293
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 294 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 351
>gi|222095228|ref|YP_002529288.1| 30S ribosomal protein S1 [Bacillus cereus Q1]
gi|221239286|gb|ACM11996.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
Q1]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V GTV + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGTVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A +G G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|423555636|ref|ZP_17531939.1| ribosomal protein S1 [Bacillus cereus MC67]
gi|401197040|gb|EJR03978.1| ribosomal protein S1 [Bacillus cereus MC67]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELNQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|408829074|ref|ZP_11213964.1| 30S ribosomal protein S1 [Streptomyces somaliensis DSM 40738]
Length = 499
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|408356594|ref|YP_006845125.1| 30S ribosomal protein S1 [Amphibacillus xylanus NBRC 15112]
gi|407727365|dbj|BAM47363.1| 30S ribosomal protein S1 [Amphibacillus xylanus NBRC 15112]
Length = 378
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 16/233 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF+ +G +V G V ++ LVDI K+ +P E H HVE A V L +E
Sbjct: 13 DFS--VGQEVTGKVVKVEDNQVLVDIGWKTDGIVPLNELT-HL--HVESASEVVNLDDEL 67
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+ DD ++LS + + E AW + V + V KGG+V +V G+RGF
Sbjct: 68 TLKINKITDDEVILSKQAVDTEKAWADLENKLASGEVFEATVKEIVKGGLVVDV-GVRGF 126
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLG 263
VP S + + L +L LK VE+D ++R++LS+R + + A L
Sbjct: 127 VPASLVEVHYVEDFSTYLDTELTLKVVELDRSKNRVILSHRAVVEEESEKLKEQRLASLE 186
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V + +GAFID+GGI+GL+H+S+++H+ V + V+ G+T+KV
Sbjct: 187 EGQVVEGKVARITDFGAFIDLGGIDGLVHISELAHEHVNHASDVISEGETVKV 239
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 108/209 (51%), Gaps = 19/209 (9%)
Query: 114 GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173
G +VD+ + ++P A + ++ +VE+ + ++ + + + ++LS R +
Sbjct: 116 GLVVDVGVR--GFVP---ASLVEVHYVEDFSTYLDTELTLKVVELDRSKNRVILSHRAVV 170
Query: 174 YE----LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEE 227
E L +R L+ E VV+GKV G ++ G+ G V S+++ + + A +
Sbjct: 171 EEESEKLKEQRLASLE-EGQVVEGKVARITDFGAFIDLGGIDGLVHISELAHEHVNHASD 229
Query: 228 LL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAF 281
++ G+ + +K + VD E R+ LS + + A + ++ G +V GTV+ L +GAF
Sbjct: 230 VISEGETVKVKVLSVDVESERISLSIKATLPGPWAGIEDKIKPGDIVKGTVKRLVNFGAF 289
Query: 282 IDI-GGINGLLHVSQISHDRVADIATVLQ 309
++I + GL+H+SQIS + + VL+
Sbjct: 290 VEIFPRVEGLVHISQISTEHIGTPHEVLE 318
>gi|423647524|ref|ZP_17623094.1| ribosomal protein S1 [Bacillus cereus VD169]
gi|401285478|gb|EJR91317.1| ribosomal protein S1 [Bacillus cereus VD169]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 86/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGFVP S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFVPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFVP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|297195006|ref|ZP_06912404.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
25486]
gi|197721927|gb|EDY65835.1| 30S ribosomal protein S1 [Streptomyces pristinaespiralis ATCC
25486]
Length = 500
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|229160548|ref|ZP_04288543.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
gi|228622958|gb|EEK79789.1| 30S ribosomal protein S1 [Bacillus cereus R309803]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELNQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G + V
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVTV 326
>gi|228996709|ref|ZP_04156346.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
gi|228763028|gb|EEM11938.1| 30S ribosomal protein S1 [Bacillus mycoides Rock3-17]
Length = 382
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/234 (34%), Positives = 128/234 (54%), Gaps = 24/234 (10%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVII 156
++G V G+V + + LV++ K+ +P E A +H +E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVKLDQNLELK 71
Query: 157 GENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
DD LVLS R + E AW E+ + DV VK V GG+V ++ G+RG
Sbjct: 72 VIKLEDDDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVKDIV----NGGLVVDL-GVRG 126
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P S + + + GK L +K VE+D E++R++LS++ + ++ + L
Sbjct: 127 FIPASLVEMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVEQELESKKKEAISSL 186
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++G ++GL+H+SQISHDRV + VL G ++KV
Sbjct: 187 KEGDVVEGTVQRLTDFGAFVNVGDVDGLVHISQISHDRVEQPSDVLTQGQSVKV 240
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEMYYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V + G V SQIS +
Sbjct: 170 VVEQELESKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGDVDGLVHISQISHDRVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
++L G+ + +K + VD + R+ LS + A + A++ G + G V+ + +GA
Sbjct: 230 DVLTQGQSVKVKVLSVDADTQRISLSIKAAQPGPWENVSAEVKAGDIREGIVKRIVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|315604243|ref|ZP_07879309.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313949|gb|EFU62000.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 478
Score = 111 bits (277), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 134/235 (57%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + E+ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPEDV-VAVGDQI 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGKIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 203 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 257
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 105/223 (47%), Gaps = 41/223 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQV----RSGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDMDRERVSLSLKATQEDPWQAFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 286 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 328
>gi|374709444|ref|ZP_09713878.1| 30S ribosomal protein S1 [Sporolactobacillus inulinus CASD]
Length = 384
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 78/244 (31%), Positives = 128/244 (52%), Gaps = 15/244 (6%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
+EE + + ++D + +GT V G V + + ALVD+ K LP E HVE+
Sbjct: 2 VEEVNHDMAQFDALN-VGTVVNGKVTKVEEKHALVDVGYKVDGILPISELSS---LHVEK 57
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
+ +E + DD LVLS R + +LAW+ + ++ KGG
Sbjct: 58 VADLLKEGDEISVKVTKLEDDELVLSKREVDADLAWDDLEDKFNNKTTFSVEIADVVKGG 117
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR-------- 252
+V ++ G+RGF+P S + + + GK L +K VE+D E+ +++LS+R
Sbjct: 118 LVVDL-GVRGFIPASLVERHFVEDFSDYKGKPLDVKIVELDREKRKVILSHRAVLDEVAD 176
Query: 253 KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
K ++ + GSV+ GTVQ L +G F+DIGG++GL+H+SQ++H V + V+ GD
Sbjct: 177 KKKTETLESIQEGSVLEGTVQRLTDFGVFVDIGGVDGLVHISQLAHYHVETPSEVVAEGD 236
Query: 313 TLKV 316
+KV
Sbjct: 237 HVKV 240
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 165 LVLSLRMIQYELA-WERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++LS R + E+A ++ L+S E V++G V GV ++ G+ G V SQ++
Sbjct: 163 VILSHRAVLDEVADKKKTETLESIQEGSVLEGTVQRLTDFGVFVDIGGVDGLVHISQLAH 222
Query: 222 K--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQ 273
T E++ G + +K + VD E R+ LS + +++++ +G V+ GTV+
Sbjct: 223 YHVETPSEVVAEGDHVKVKVLAVDPENERISLSIKATQPGPWETAKSKINVGDVLEGTVK 282
Query: 274 SLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L P+GAF+++ G+ GL+H+S+ISH+ + VL +KV
Sbjct: 283 RLVPFGAFVELLPGVEGLVHISEISHEHIGTPEEVLTENQKIKV 326
>gi|295839505|ref|ZP_06826438.1| ribosomal protein S1 [Streptomyces sp. SPB74]
gi|197699395|gb|EDY46328.1| ribosomal protein S1 [Streptomyces sp. SPB74]
Length = 504
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|302518440|ref|ZP_07270782.1| ribosomal protein S1 [Streptomyces sp. SPB78]
gi|318056317|ref|ZP_07975040.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actG]
gi|318076495|ref|ZP_07983827.1| 30S ribosomal protein S1 [Streptomyces sp. SA3_actF]
gi|302427335|gb|EFK99150.1| ribosomal protein S1 [Streptomyces sp. SPB78]
Length = 504
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V G + D L+DI K+ +P++E I H +
Sbjct: 23 EAFLAAIDETIKY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 79
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 80 NEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 137
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 138 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 196
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 197 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 256
Query: 310 PGDTLKV 316
G + V
Sbjct: 257 VGQEVTV 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|357388961|ref|YP_004903800.1| 30S ribosomal protein S1 [Kitasatospora setae KM-6054]
gi|311895436|dbj|BAJ27844.1| putative ribosomal protein S1 [Kitasatospora setae KM-6054]
Length = 496
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 24 EAFLAAIDETIKY-FND--GDIVEGIIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 80
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW +++ ED +V G V+
Sbjct: 81 HEVVKV--GDEIEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVV 138
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK+L K +E+D+ ++ +VLS R +
Sbjct: 139 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQ 197
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + V++
Sbjct: 198 TQSEVRQTFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEVVE 257
Query: 310 PGDTLKV 316
G + V
Sbjct: 258 VGQEVTV 264
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 130 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 184
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 185 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 232
Query: 208 EGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 233 GGVDGLVHVSELSWKHIDHPNEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 292
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
I VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 293 RTHQISQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEIFV 350
>gi|423454947|ref|ZP_17431800.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
gi|423472523|ref|ZP_17449266.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
gi|401135226|gb|EJQ42829.1| ribosomal protein S1 [Bacillus cereus BAG5X1-1]
gi|402428055|gb|EJV60153.1| ribosomal protein S1 [Bacillus cereus BAG6O-2]
Length = 382
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|295108633|emb|CBL22586.1| Ribosomal protein S1 [Ruminococcus obeum A2-162]
Length = 301
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 137/246 (55%), Gaps = 12/246 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
++++F LE+ E G + GTV D + ++D+ + +P ++ +++
Sbjct: 4 SMKDFEKELEESMKKIEEGDILTGTVISVDEKEVILDLKYYAEGVIPVEDYSREPGFNIK 63
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E + G + ++ +++ +++LS LAW++ +L+ ++ V G
Sbjct: 64 EE-VHEGDEVSATVVRKDDGHGNILLSRVEASDILAWDKLEELKKSGEIINVVVKGITNA 122
Query: 202 GVVAEVEGLRGFVPFSQIS--SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR---KAMA 256
GV+A VEG+RGF+P S+++ EE L K + ++ ++VD++ +L+LS + +A A
Sbjct: 123 GVIAYVEGVRGFIPASKLALGYVEDTEEYLNKPIQVQAIDVDKDSKKLILSAKEILRAKA 182
Query: 257 DSQ-----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQP 310
+ + + L IG V GTV+SL+PYGAF+D+G G++GL+H+SQI R+ + VL
Sbjct: 183 EEERKNKVSNLEIGLVTEGTVESLQPYGAFVDLGNGLSGLVHISQICEKRIKKPSEVLAV 242
Query: 311 GDTLKV 316
GD +KV
Sbjct: 243 GDKVKV 248
>gi|218234210|ref|YP_002366278.1| 30S ribosomal protein S1 [Bacillus cereus B4264]
gi|228920308|ref|ZP_04083655.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|228957873|ref|ZP_04119613.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|229043342|ref|ZP_04191060.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
gi|229069150|ref|ZP_04202441.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
gi|229078780|ref|ZP_04211333.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
gi|229109053|ref|ZP_04238653.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
gi|229144196|ref|ZP_04272610.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
gi|229149795|ref|ZP_04278024.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
gi|229178005|ref|ZP_04305377.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
gi|365162295|ref|ZP_09358425.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|423414716|ref|ZP_17391836.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
gi|423423673|ref|ZP_17400704.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
gi|423429502|ref|ZP_17406506.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
gi|423435084|ref|ZP_17412065.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
gi|423579790|ref|ZP_17555901.1| ribosomal protein S1 [Bacillus cereus VD014]
gi|423588020|ref|ZP_17564107.1| ribosomal protein S1 [Bacillus cereus VD045]
gi|423629542|ref|ZP_17605290.1| ribosomal protein S1 [Bacillus cereus VD154]
gi|423643358|ref|ZP_17618976.1| ribosomal protein S1 [Bacillus cereus VD166]
gi|423654378|ref|ZP_17629677.1| ribosomal protein S1 [Bacillus cereus VD200]
gi|218162167|gb|ACK62159.1| ribosomal protein S1 [Bacillus cereus B4264]
gi|228605493|gb|EEK62942.1| 30S ribosomal protein S1 [Bacillus cereus 172560W]
gi|228633659|gb|EEK90259.1| 30S ribosomal protein S1 [Bacillus cereus m1550]
gi|228639204|gb|EEK95620.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST24]
gi|228674331|gb|EEL29575.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-15]
gi|228704462|gb|EEL56895.1| 30S ribosomal protein S1 [Bacillus cereus Rock4-2]
gi|228713902|gb|EEL65786.1| 30S ribosomal protein S1 [Bacillus cereus F65185]
gi|228725990|gb|EEL77229.1| 30S ribosomal protein S1 [Bacillus cereus AH676]
gi|228801789|gb|EEM48666.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pakistani
str. T13001]
gi|228839331|gb|EEM84625.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
huazhongensis BGSC 4BD1]
gi|363618608|gb|EHL69952.1| ribosomal protein S1 [Bacillus sp. 7_6_55CFAA_CT2]
gi|401097636|gb|EJQ05658.1| ribosomal protein S1 [Bacillus cereus BAG3O-2]
gi|401115363|gb|EJQ23216.1| ribosomal protein S1 [Bacillus cereus BAG3X2-2]
gi|401121808|gb|EJQ29597.1| ribosomal protein S1 [Bacillus cereus BAG4O-1]
gi|401125322|gb|EJQ33082.1| ribosomal protein S1 [Bacillus cereus BAG4X12-1]
gi|401217245|gb|EJR23939.1| ribosomal protein S1 [Bacillus cereus VD014]
gi|401227757|gb|EJR34286.1| ribosomal protein S1 [Bacillus cereus VD045]
gi|401267409|gb|EJR73469.1| ribosomal protein S1 [Bacillus cereus VD154]
gi|401275362|gb|EJR81329.1| ribosomal protein S1 [Bacillus cereus VD166]
gi|401295889|gb|EJS01512.1| ribosomal protein S1 [Bacillus cereus VD200]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|153811995|ref|ZP_01964663.1| hypothetical protein RUMOBE_02388 [Ruminococcus obeum ATCC 29174]
gi|149831894|gb|EDM86980.1| S1 RNA binding domain protein [Ruminococcus obeum ATCC 29174]
Length = 301
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 80/258 (31%), Positives = 140/258 (54%), Gaps = 36/258 (13%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
+++++ LE+ E G + GTV D + ++D+ + +P + +
Sbjct: 4 SMKDYEKELEESMKTIEEGDILTGTVISVDEKEVILDLKYYAEGVIPAE-------NYSR 56
Query: 142 EAGIVPGLKEEF--------VIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DV 189
E G LK+E ++ +++ +++LS LAW++ ++L+ DV
Sbjct: 57 EPGF--SLKDEVHEGDEVSATVVRKDDGQGNILLSRVEAVDVLAWDKLKELKESGEVLDV 114
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRL 247
VVKG GV+A VEG+RGF+P S+++ EE L K + ++ ++VD+E +L
Sbjct: 115 VVKG----ITNAGVIAYVEGVRGFIPASKLALNYVEDTEEYLNKPIQVQVLDVDKESKKL 170
Query: 248 VLSNR---KAMADSQ-----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH 298
+LS + +A A+ + + L IG V GTV+SL+PYGAF+++G G++GL+H+SQI
Sbjct: 171 ILSAKEILRAKAEEERKNKVSNLEIGLVTEGTVESLQPYGAFVNLGNGLSGLVHISQICE 230
Query: 299 DRVADIATVLQPGDTLKV 316
R+ + VL GDT+KV
Sbjct: 231 KRIKKPSEVLAVGDTVKV 248
>gi|228938709|ref|ZP_04101313.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|228971591|ref|ZP_04132214.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228978201|ref|ZP_04138578.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|384185506|ref|YP_005571402.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410673799|ref|YP_006926170.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|423382992|ref|ZP_17360248.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
gi|423530548|ref|ZP_17506993.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
gi|452197822|ref|YP_007477903.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228781218|gb|EEM29419.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|228788114|gb|EEM36070.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
thuringiensis str. T01001]
gi|228820950|gb|EEM66971.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar berliner
ATCC 10792]
gi|326939215|gb|AEA15111.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar chinensis
CT-43]
gi|401643852|gb|EJS61546.1| ribosomal protein S1 [Bacillus cereus BAG1X1-2]
gi|402447063|gb|EJV78921.1| ribosomal protein S1 [Bacillus cereus HuB1-1]
gi|409172928|gb|AFV17233.1| 30S ribosomal protein S1 [Bacillus thuringiensis Bt407]
gi|452103215|gb|AGG00155.1| SSU ribosomal protein S1p [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|423637751|ref|ZP_17613404.1| ribosomal protein S1 [Bacillus cereus VD156]
gi|401273012|gb|EJR79000.1| ribosomal protein S1 [Bacillus cereus VD156]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G ++ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVIKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|373856650|ref|ZP_09599394.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
gi|372453629|gb|EHP27096.1| RNA binding S1 domain protein [Bacillus sp. 1NLA3E]
Length = 379
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 130/234 (55%), Gaps = 19/234 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEA--GIVPGLKEE 152
N E+G KVKG V + + LV+I +K +P E HVE+A + G +
Sbjct: 12 NFEVGDKVKGQVTKVEEKQVLVNIENSKLDGIIPISELSSL---HVEKASDAVAEGDDLD 68
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+I E ++L+LS R + E AW+ + V + ++ KGG+V ++ G+RG
Sbjct: 69 LEVIKVEE--EALILSKRKVDAEKAWDDLEAKFNSGEVFEAEIKDVVKGGLVVDL-GVRG 125
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------L 262
FVP S + + + + G+ L K VE+D+E++RL+LS+R + + + + L
Sbjct: 126 FVPASLVEAFFVEDFSDYKGQSLAFKIVELDKEKNRLILSHRIVVEEQKGKQKQNLIDSL 185
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ + +GAF+DIGG++GL+H+SQ+SH V + V+Q G +++V
Sbjct: 186 EAGQVIEGTVQRITDFGAFVDIGGVDGLVHISQLSHQHVDKPSDVVQEGQSVQV 239
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/234 (26%), Positives = 110/234 (47%), Gaps = 25/234 (10%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VD+ + ++P A + + VE+ G F
Sbjct: 105 FEAEIKDVVKG--------GLVVDLGVR--GFVP---ASLVEAFFVEDFSDYKGQSLAFK 151
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLR 211
I+ ++ + L+LS R++ E ++ + L V++G V G ++ G+
Sbjct: 152 IVELDKEKNRLILSHRIVVEEQKGKQKQNLIDSLEAGQVIEGTVQRITDFGAFVDIGGVD 211
Query: 212 GFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQ+S K + G+ + +K + VD + R+ LS + + +
Sbjct: 212 GLVHISQLSHQHVDKPSDVVQEGQSVQVKVLSVDRDNDRISLSIKDTLPGPWTNIAEKAP 271
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GS + G V+ + YGAF+++ G+ GL+H+SQISH +A VL+ G ++V
Sbjct: 272 KGSTLTGVVKRIVSYGAFVEVFPGVEGLVHISQISHKHIATPHEVLKEGQEVQV 325
>gi|393201458|ref|YP_006463300.1| 30S ribosomal protein S1 [Solibacillus silvestris StLB046]
gi|327440789|dbj|BAK17154.1| ribosomal protein S1 [Solibacillus silvestris StLB046]
Length = 380
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 111/188 (59%), Gaps = 11/188 (5%)
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
H+E+A + + ++ ++ +++ VLS R + AW+ ++ V + +V
Sbjct: 53 HIEKASDIVSVGDQLELMITKVEEENFVLSKRKVDALHAWDDLKEKFESGEVFEAEVKDV 112
Query: 199 NKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG+V ++ G+RGFVP S + E+ GK L LK E+D+E+ RL+LS+R +
Sbjct: 113 VKGGLVVDL-GVRGFVPASLVEDYFVEDFEDYKGKTLRLKITELDKEKGRLILSHRAVLD 171
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+ +A + G ++ GTVQ L +GAFID+GGI+GL+H+SQ++H+ V DI+TVL
Sbjct: 172 EEKASKKQQVIQNIHQGDMLEGTVQRLAKFGAFIDLGGIDGLVHISQVAHEHVEDISTVL 231
Query: 309 QPGDTLKV 316
Q G ++ V
Sbjct: 232 QEGQSVTV 239
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 165 LVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
L+LS R ++ E A ++ + +Q+ + +++G V K G ++ G+ G V SQ++
Sbjct: 162 LILSHRAVLDEEKASKKQQVIQNIHQGDMLEGTVQRLAKFGAFIDLGGIDGLVHISQVAH 221
Query: 222 KSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIGTVQ 273
+ + +L G+ + +K + VD R+ LS + + D + + G+++ GTV+
Sbjct: 222 EHVEDISTVLQEGQSVTVKVLSVDIPNERVSLSIKDTLPGPWTDIEEKASKGAILTGTVK 281
Query: 274 SLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +GAF+++ G+ GL+H+SQISH + VL+ G ++V
Sbjct: 282 RLVTFGAFVEVFPGVEGLVHISQISHKHITTPHEVLKDGQEVEV 325
>gi|229016854|ref|ZP_04173782.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
gi|229023060|ref|ZP_04179574.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
gi|423420453|ref|ZP_17397542.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
gi|228738206|gb|EEL88688.1| 30S ribosomal protein S1 [Bacillus cereus AH1272]
gi|228744415|gb|EEL94489.1| 30S ribosomal protein S1 [Bacillus cereus AH1273]
gi|401102362|gb|EJQ10349.1| ribosomal protein S1 [Bacillus cereus BAG3X2-1]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GYVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|254384227|ref|ZP_04999571.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
gi|194343116|gb|EDX24082.1| 30S ribosomal protein S1 [Streptomyces sp. Mg1]
Length = 503
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|218896527|ref|YP_002444938.1| 30S ribosomal protein S1 [Bacillus cereus G9842]
gi|228900178|ref|ZP_04064410.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
gi|402561411|ref|YP_006604135.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
gi|423361556|ref|ZP_17339058.1| ribosomal protein S1 [Bacillus cereus VD022]
gi|423564107|ref|ZP_17540383.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
gi|434374536|ref|YP_006609180.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
gi|218545661|gb|ACK98055.1| ribosomal protein S1 [Bacillus cereus G9842]
gi|228859448|gb|EEN03876.1| 30S ribosomal protein S1 [Bacillus thuringiensis IBL 4222]
gi|401079367|gb|EJP87665.1| ribosomal protein S1 [Bacillus cereus VD022]
gi|401197598|gb|EJR04527.1| ribosomal protein S1 [Bacillus cereus MSX-A1]
gi|401790063|gb|AFQ16102.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-771]
gi|401873093|gb|AFQ25260.1| 30S ribosomal protein S1 [Bacillus thuringiensis HD-789]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|228951974|ref|ZP_04114071.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|423504811|ref|ZP_17481402.1| ribosomal protein S1 [Bacillus cereus HD73]
gi|449088385|ref|YP_007420826.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|228807699|gb|EEM54221.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. T03a001]
gi|402455333|gb|EJV87116.1| ribosomal protein S1 [Bacillus cereus HD73]
gi|449022142|gb|AGE77305.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|150390386|ref|YP_001320435.1| RNA-binding S1 domain-containing protein [Alkaliphilus
metalliredigens QYMF]
gi|149950248|gb|ABR48776.1| RNA binding S1 domain protein [Alkaliphilus metalliredigens QYMF]
Length = 383
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/249 (30%), Positives = 132/249 (53%), Gaps = 13/249 (5%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+S +EE +EK + G V G V ++G V+I K+ +P E I
Sbjct: 1 MSHDMEELMEEIEKSLIRPKRGEVVTGKVIQVSDKGITVNIGYKADGIVPRDE--ISNDP 58
Query: 139 HVEEAGIVPGLKEEFV-IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
+ + E V II ++ + +++LS + +++ WE ++ + +V+ KVV
Sbjct: 59 TITPQDVAKADDEISVYIIKTDDGEGNVLLSTKRVEHTKGWEDLEKIHDTESLVESKVVE 118
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLS----- 250
+ KGGV+A G+R F+P SQ+S + + +GK K +E+D ++++ VLS
Sbjct: 119 SVKGGVIAIARGIRCFIPASQLSDRYVDDLKTFVGKSFNAKVIEIDRQKNKAVLSRKEVL 178
Query: 251 ---NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
N++ AD A+L G + G V+ L +GAF+DIGGI+GL+H+S++S RV + + V
Sbjct: 179 QQENKEKKADVFAKLEKGMQIRGEVKRLTNFGAFVDIGGIDGLVHISELSWGRVKNPSEV 238
Query: 308 LQPGDTLKV 316
+ D ++V
Sbjct: 239 VSVEDQVEV 247
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 70/135 (51%), Gaps = 9/135 (6%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELLGKD-LPLKFVEVDEEQSR 246
++G+V G ++ G+ G V S++S K+ +E + +D + +K ++ DE +
Sbjct: 199 IRGEVKRLTNFGAFVDIGGIDGLVHISELSWGRVKNPSEVVSVEDQVEVKVIDFDETTGK 258
Query: 247 LVLSNRKAMADSQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
+ LS ++ + + G ++ G V L +GAF+++ G++GL+H+SQIS +
Sbjct: 259 VSLSIKQTQPEPWTLIADKFKAGDILEGKVVRLVDFGAFVELMPGLDGLVHISQISEAHI 318
Query: 302 ADIATVLQPGDTLKV 316
A + L G + V
Sbjct: 319 AKPSEELHVGQNVNV 333
>gi|229172235|ref|ZP_04299799.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
gi|423403890|ref|ZP_17381063.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
gi|423460523|ref|ZP_17437320.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
gi|423475480|ref|ZP_17452195.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
gi|228611223|gb|EEK68481.1| 30S ribosomal protein S1 [Bacillus cereus MM3]
gi|401140576|gb|EJQ48132.1| ribosomal protein S1 [Bacillus cereus BAG5X2-1]
gi|401648034|gb|EJS65637.1| ribosomal protein S1 [Bacillus cereus BAG2X1-2]
gi|402435350|gb|EJV67384.1| ribosomal protein S1 [Bacillus cereus BAG6X1-1]
Length = 382
Score = 110 bits (276), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQILELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|229189679|ref|ZP_04316693.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
gi|228593728|gb|EEK51533.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10876]
Length = 382
Score = 110 bits (275), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+++ G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEVLPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|385653141|ref|ZP_10047694.1| 30S ribosomal protein S1 [Leucobacter chromiiresistens JG 31]
Length = 481
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 139/248 (56%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
++F +A+E K+ FN G ++GTV D L+D+ K+ +P++E I KH
Sbjct: 20 DDFLAAVESTLKF-FND--GDLIEGTVVKIDRDEVLLDVGYKTEGVIPSRELSI---KHD 73
Query: 141 EEAGIVP--GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ G V G E +++ + + + L+LS + QYE AW +++ + VV G V+
Sbjct: 74 VDPGEVVEVGDSVEALVLQKEDKEGRLILSKKRAQYERAWGDVEKIKENEGVVTGTVIEV 133
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S I + + LG+++ K +E+D+ ++ +VLS R +
Sbjct: 134 VKGGLIVDI-GLRGFLPASLIELRRVRDLTPYLGQEIEAKILELDKNRNNVVLSRRALLE 192
Query: 257 DSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
++Q A+L G V G + S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 193 ETQSATRSSFLAELKPGQVRKGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIEHASDVV 252
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 253 EVGQEVTV 260
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 104/221 (47%), Gaps = 17/221 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E I+ ++
Sbjct: 126 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLIELRRVRDLTPYLGQEIEAKILELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R + E +E V KG + G ++ G+ G V S++
Sbjct: 181 NNVVLSRRALLEETQSATRSSFLAELKPGQVRKGVISSIVNFGAFVDLGGVDGLVHVSEL 240
Query: 220 SSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S K A +++ G+++ ++ + V+ ++ R+ LS + D IG + G
Sbjct: 241 SWKHIEHASDVVEVGQEVTVEVLSVELDRERVSLSLKATQEDPWQVFARTHAIGQIAPGV 300
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
V L P+GAF+ + GI GL+H+S++S V V+Q G
Sbjct: 301 VTKLVPFGAFVRVADGIEGLVHISELSGQHVELAEQVVQAG 341
>gi|239986932|ref|ZP_04707596.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 11379]
gi|291443880|ref|ZP_06583270.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
gi|291346827|gb|EFE73731.1| 30S ribosomal protein S1 [Streptomyces roseosporus NRRL 15998]
Length = 504
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|182439327|ref|YP_001827046.1| 30S ribosomal protein S1 [Streptomyces griseus subsp. griseus NBRC
13350]
gi|326779979|ref|ZP_08239244.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
gi|411004248|ref|ZP_11380577.1| 30S ribosomal protein S1 [Streptomyces globisporus C-1027]
gi|178467843|dbj|BAG22363.1| putative 30S ribosomal protein S1 [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326660312|gb|EGE45158.1| RNA binding S1 domain protein [Streptomyces griseus XylebKG-1]
Length = 505
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|365860826|ref|ZP_09400618.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
gi|364009736|gb|EHM30684.1| 30S ribosomal protein S1 [Streptomyces sp. W007]
Length = 506
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|357414015|ref|YP_004925751.1| RNA binding S1 domain-containing protein [Streptomyces flavogriseus
ATCC 33331]
gi|320011384|gb|ADW06234.1| RNA binding S1 domain protein [Streptomyces flavogriseus ATCC
33331]
Length = 503
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|440776925|ref|ZP_20955754.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436722913|gb|ELP46799.1| 30S ribosomal protein S1 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 435
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/217 (31%), Positives = 122/217 (56%), Gaps = 14/217 (6%)
Query: 111 DNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSL 169
D L+DI K+ +P +E I H + E + G + E +++ + + + L+LS
Sbjct: 2 DRDEVLLDIGYKTEGVIPARELSIKHDVDPNEVVSV--GDEVEALVLTKEDKEGRLILSK 59
Query: 170 RMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--E 227
+ QYE AW L+ +D VKG V+ KGG++ ++ GLRGF+P S + + +
Sbjct: 60 KRAQYERAWGTIEALKEKDEAVKGTVIEVVKGGLILDI-GLRGFLPASLVEMRRVRDLQP 118
Query: 228 LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYG 279
+GK++ K +E+D+ ++ +VLS R + +Q+ QL G++ G V S+ +G
Sbjct: 119 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQLQKGAIRKGVVSSIVNFG 178
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+D+GG++GL+HVS++S + + V+Q GD + V
Sbjct: 179 AFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGDEVTV 215
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 108/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 81 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 135
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 136 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 194
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 195 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 254
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 255 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 301
>gi|315646408|ref|ZP_07899526.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
gi|315278051|gb|EFU41371.1| RNA binding S1 domain protein [Paenibacillus vortex V453]
Length = 405
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V I K +P +E ++ + +A + G + E ++ N
Sbjct: 26 GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDA-VQVGQEVECKVVSIN 84
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ +SLVLS R I E +WE + ++ V + V KGG+VA+V G RGF+P S +
Sbjct: 85 DDKESLVLSKRAIDTENSWEELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIPASMV 143
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ + G+ L +K E+D E ++++LS + + + ++L G V+
Sbjct: 144 ERHFVEDFSDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFESNKQKVMSELQDGQVLE 203
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V A VL GD ++V
Sbjct: 204 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVEKPADVLSEGDQVRV 250
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQI--SSKSTAEELL--GKDLPLKFVEVDEEQS 245
V++G V + G +V G+ G V S+I S ++L G + +K ++VD E+
Sbjct: 201 VLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVEKPADVLSEGDQVRVKVLKVDPEKG 260
Query: 246 RLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + A + Q G +V G V+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 261 KISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKH 320
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G ++V
Sbjct: 321 IGTPQEVLKEGQEVQV 336
>gi|344999023|ref|YP_004801877.1| RNA binding S1 domain-containing protein [Streptomyces sp.
SirexAA-E]
gi|344314649|gb|AEN09337.1| RNA binding S1 domain protein [Streptomyces sp. SirexAA-E]
Length = 504
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V G + D L+DI K+ +P++E I H + E + G +
Sbjct: 34 KY-FND--GDIVDGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDPNEVVKV--GDE 88
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED +V G V+ KGG++ ++ GL
Sbjct: 89 IEALVLQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGIVTGTVIEVVKGGLILDI-GL 147
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK+L K +E+D+ ++ +VLS R + +Q++
Sbjct: 148 RGFLPASLVEMRRVRDLQPYVGKELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRQTFLT 207
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 208 TLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 67/238 (28%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGKELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRQTFLTTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D Q
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQQFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q D + V
Sbjct: 292 RTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVNDEIFV 349
>gi|228964572|ref|ZP_04125681.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228795106|gb|EEM42603.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar sotto str.
T04001]
Length = 393
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|42780699|ref|NP_977946.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
gi|3122814|sp|O06000.1|RS1H_BACC1 RecName: Full=30S ribosomal protein S1 homolog
gi|2094771|emb|CAA70584.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 10987]
gi|42736619|gb|AAS40554.1| ribosomal protein S1 [Bacillus cereus ATCC 10987]
Length = 382
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|404329832|ref|ZP_10970280.1| 30S ribosomal protein S1 [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 387
Score = 110 bits (275), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 77/241 (31%), Positives = 122/241 (50%), Gaps = 22/241 (9%)
Query: 94 DFNSEL--------GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
DF E+ G V G V + + ALVD+ K LP E HVE+
Sbjct: 4 DFKKEMASIKALNVGDVVNGKVTKVEEKHALVDVGYKVDGILPISELSS---LHVEKVSD 60
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
+ ++ + DD LVLS R + + AW+ + ++ KGG+V
Sbjct: 61 LLHEGDDITVKITKMEDDELVLSKREVDADKAWDDLEEKYKNKETFSVEIADVVKGGLVV 120
Query: 206 EVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR--------KAM 255
++ G+RGF+P S + + + GK L +K VE+D E+ +++LS+R K
Sbjct: 121 DL-GVRGFIPASLVERHFVEDFSDYKGKPLDVKIVELDREKRKVILSHRAVLDEEADKKK 179
Query: 256 ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
A++ A + G V+ GTVQ L +GAF+DIGG++GL+H+SQ++H V + V+ GD +K
Sbjct: 180 AETLASIKEGDVIEGTVQRLTDFGAFVDIGGVDGLVHISQLAHYHVETPSEVVSEGDKVK 239
Query: 316 V 316
V
Sbjct: 240 V 240
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V++G V G ++ G+ G V SQ++ T E++ G + +K + VD E
Sbjct: 191 VIEGTVQRLTDFGAFVDIGGVDGLVHISQLAHYHVETPSEVVSEGDKVKVKVLSVDPESE 250
Query: 246 RLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + ++ ++ G + GTV+ L P+GAF+++ G+ GL+H+S+ISH+
Sbjct: 251 RISLSIKATQPGPWETAKDKIHQGDALQGTVKRLVPFGAFVELLPGVEGLVHISEISHEH 310
Query: 301 VADIATVLQPGDTLKV 316
+ VL G +KV
Sbjct: 311 IGTPEEVLSEGQVIKV 326
>gi|229096089|ref|ZP_04227062.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
gi|229102201|ref|ZP_04232910.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
gi|229115045|ref|ZP_04244455.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
gi|407703968|ref|YP_006827553.1| histidinol-phosphate aminotransferase 1 [Bacillus thuringiensis
MC28]
gi|423380597|ref|ZP_17357881.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
gi|423443629|ref|ZP_17420535.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
gi|423446117|ref|ZP_17422996.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
gi|423466720|ref|ZP_17443488.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
gi|423536117|ref|ZP_17512535.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
gi|423538639|ref|ZP_17515030.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
gi|423544877|ref|ZP_17521235.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
gi|423618255|ref|ZP_17594089.1| ribosomal protein S1 [Bacillus cereus VD115]
gi|228668185|gb|EEL23617.1| 30S ribosomal protein S1 [Bacillus cereus Rock1-3]
gi|228681102|gb|EEL35270.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-28]
gi|228687049|gb|EEL40954.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-29]
gi|401133210|gb|EJQ40843.1| ribosomal protein S1 [Bacillus cereus BAG5O-1]
gi|401177223|gb|EJQ84415.1| ribosomal protein S1 [Bacillus cereus HuB4-10]
gi|401183052|gb|EJQ90169.1| ribosomal protein S1 [Bacillus cereus HuB5-5]
gi|401253986|gb|EJR60222.1| ribosomal protein S1 [Bacillus cereus VD115]
gi|401631349|gb|EJS49146.1| ribosomal protein S1 [Bacillus cereus BAG1O-2]
gi|402412715|gb|EJV45068.1| ribosomal protein S1 [Bacillus cereus BAG4X2-1]
gi|402415430|gb|EJV47754.1| ribosomal protein S1 [Bacillus cereus BAG6O-1]
gi|402461542|gb|EJV93255.1| ribosomal protein S1 [Bacillus cereus HuB2-9]
Length = 382
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFSDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFSDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E +V+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|317128562|ref|YP_004094844.1| RNA binding S1 domain-containing protein [Bacillus cellulosilyticus
DSM 2522]
gi|315473510|gb|ADU30113.1| RNA binding S1 domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 121/228 (53%), Gaps = 14/228 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V GT+ + + A V++ K +P E ++ V + + G + E II
Sbjct: 17 VGETVIGTITKVEEKQAFVNVGYKMDGIIPISELSSLHVEQVSDV-LSEGDEVELQII-- 73
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD L+LS + + E AW S + + V KGG+V +V G+RGF+P S
Sbjct: 74 KSTDDELILSKKEVIAEKAWNELEHKLSTSEIFEAVVADVVKGGLVVDV-GVRGFIPASL 132
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + GK L LK VE+D+E+++L+LS R + + + + + +G V+
Sbjct: 133 VERHFVEDFSDYKGKTLRLKVVEMDKEKNKLILSQRAVLDEEENEKKRKTLTSIQVGDVL 192
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VQ L +GAF+DIGG++GL+H+SQ++H V + V+ GD +KV
Sbjct: 193 EGKVQRLTDFGAFVDIGGVDGLVHISQMAHHHVDAPSEVVSEGDQIKV 240
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 84/163 (51%), Gaps = 12/163 (7%)
Query: 163 DSLVLSLRMIQYELAWERCRQ----LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ L+LS R + E E+ R+ +Q DV+ +GKV G ++ G+ G V SQ
Sbjct: 161 NKLILSQRAVLDEEENEKKRKTLTSIQVGDVL-EGKVQRLTDFGAFVDIGGVDGLVHISQ 219
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI--GSVVIGTV 272
++ E++ G + +K + VD + R+ LS + + + I G V+ G V
Sbjct: 220 MAHHHVDAPSEVVSEGDQIKVKVLGVDPDNERISLSIKDTLPGPWELVNINPGDVIEGKV 279
Query: 273 QSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTL 314
+ L +GAF+++ G+ GL+H+SQI++ + VL+ G+ +
Sbjct: 280 KRLVSFGAFVEVADGVEGLVHISQIANRHIGTPGEVLKEGENV 322
>gi|423392104|ref|ZP_17369330.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
gi|401637937|gb|EJS55690.1| ribosomal protein S1 [Bacillus cereus BAG1X1-3]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQEKFNSGYVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GYVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|217959075|ref|YP_002337623.1| 30S ribosomal protein S1 [Bacillus cereus AH187]
gi|229138291|ref|ZP_04266886.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
gi|375283572|ref|YP_005104010.1| 30S ribosomal protein S1 [Bacillus cereus NC7401]
gi|423353921|ref|ZP_17331547.1| ribosomal protein S1 [Bacillus cereus IS075]
gi|423569488|ref|ZP_17545734.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
gi|217064831|gb|ACJ79081.1| ribosomal protein S1 [Bacillus cereus AH187]
gi|228645183|gb|EEL01420.1| 30S ribosomal protein S1 [Bacillus cereus BDRD-ST26]
gi|358352098|dbj|BAL17270.1| ribosomal protein S1 [Bacillus cereus NC7401]
gi|401088267|gb|EJP96458.1| ribosomal protein S1 [Bacillus cereus IS075]
gi|401206476|gb|EJR13267.1| ribosomal protein S1 [Bacillus cereus MSX-A12]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEE--DDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|317506138|ref|ZP_07963961.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
gi|316255560|gb|EFV14807.1| S1 RNA binding domain-containing protein [Segniliparus rugosus ATCC
BAA-974]
Length = 482
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V GT+ + L+DI K+ +P++E I H + E + G
Sbjct: 31 KY-FND--GDIVSGTIVKVERDEVLLDIGYKTEGVIPSRELSIKHDVDPSEVVSV--GDT 85
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW + +D VKG V+ KGG++ ++ GL
Sbjct: 86 VEALVLTKEDKEGRLILSKKRAQYERAWGEVEAHKEKDESVKGVVIEVVKGGLIVDI-GL 144
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 145 RGFLPASLVDMRRVRDLQPYIGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLN 204
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G++ G + S+ +GAF+D+GG++GL+HVS++S + + V++ GD + V
Sbjct: 205 RLQKGNIKKGVISSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVKVGDEVTV 260
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 107/226 (47%), Gaps = 19/226 (8%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
++ A + + + E VKG V G +VDI + +LP A + ++ V +
Sbjct: 108 QYERAWGEVEAHKEKDESVKGVVIEVVKGGLIVDIGLR--GFLP---ASLVDMRRVRDLQ 162
Query: 145 IVPGLKEEFVIIGENEADDSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
G + E II ++ +++VLS L Q E+ E +LQ ++ KG +
Sbjct: 163 PYIGKEIETKIIELDKNRNNVVLSRRAWLEQTQSEVRTEFLNRLQKGNIK-KGVISSIVN 221
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G V S++S K +G ++ ++ ++VD + R+ LS +
Sbjct: 222 FGAFVDLGGVDGLVHVSELSWKHIDHPSEVVKVGDEVTVEVLDVDFSRERVSLSLKATQE 281
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
D IG +V G V L P+GAF+ +G GI GL+H+S++S
Sbjct: 282 DPWRHFARTHAIGQIVQGKVTKLVPFGAFVRVGEGIEGLVHISELS 327
>gi|402299919|ref|ZP_10819481.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
gi|401724905|gb|EJS98228.1| 30S ribosomal protein S1 [Bacillus alcalophilus ATCC 27647]
Length = 383
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 122/228 (53%), Gaps = 14/228 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G + G + +++ A VD+ K +P E HVE+ V + +E +
Sbjct: 17 VGDVISGKITKVEDKQAFVDVGYKVDGVIPISELSS---LHVEKVSDVLSVDDEVELKVL 73
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
DD LVLS R +Q E AW + V++ + KGG+V ++ G+RGF+P S
Sbjct: 74 KLEDDELVLSKRAVQAEKAWVSLQNSFETGEVIETIIADVVKGGLVVDL-GVRGFIPASL 132
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL------GI--GSVV 268
+ + + GK L LK VE+D++ ++L+LS R + + + GI G V+
Sbjct: 133 VERHYVEDFSDYKGKTLRLKVVELDKDNNKLILSQRVVLDEEVEKQKKHLLQGIEPGMVI 192
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+H+SQ++H RV + V+ GD +KV
Sbjct: 193 EGTVQRLTNFGAFVDLGGVDGLVHISQLAHHRVESPSDVVSEGDKVKV 240
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 108/217 (49%), Gaps = 23/217 (10%)
Query: 114 GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI- 172
G +VD+ + ++P A + + +VE+ G ++ ++ ++ L+LS R++
Sbjct: 117 GLVVDLGVR--GFIP---ASLVERHYVEDFSDYKGKTLRLKVVELDKDNNKLILSQRVVL 171
Query: 173 QYELAWERCRQLQSED--VVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS-------SKS 223
E+ ++ LQ + +V++G V G ++ G+ G V SQ++ S
Sbjct: 172 DEEVEKQKKHLLQGIEPGMVIEGTVQRLTNFGAFVDLGGVDGLVHISQLAHHRVESPSDV 231
Query: 224 TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYG 279
+E G + +K + VD E R+ LS + + + + G VV GTV+ L +G
Sbjct: 232 VSE---GDKVKVKVLSVDTESERVSLSIKDTLPGPWEKIEGTISQGDVVSGTVKRLVSFG 288
Query: 280 AFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
AFI++ G+ GL+H+SQI++ + + VL G+ ++
Sbjct: 289 AFIEVADGVEGLVHISQIANRHIGTPSEVLTEGEKVQ 325
>gi|402553021|ref|YP_006594292.1| 30S ribosomal protein S1 [Bacillus cereus FRI-35]
gi|401794231|gb|AFQ08090.1| 30S ribosomal protein S1 [Bacillus cereus FRI-35]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|384179530|ref|YP_005565292.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|324325614|gb|ADY20874.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar finitimus
YBT-020]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|397670587|ref|YP_006512122.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
gi|395141590|gb|AFN45697.1| 30S ribosomal protein S1 [Propionibacterium propionicum F0230a]
Length = 482
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 134/247 (54%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E F +A++ KY FN G V GTV D L+DI K+ +P++E I H +
Sbjct: 20 EAFMAAVDATIKY-FND--GDIVSGTVVKVDRDEVLLDIGYKTEGVIPSKELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+ + G + E ++ + + + L+LS + QYE AW +++ ED VV G V+
Sbjct: 77 FDVVRV--GDEIEALVQQKEDKEGRLILSKKRAQYERAWGTIEKIKEEDGVVSGSVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +G +L K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLIVDI-GLRGFLPASLVEMRRVRDLQPYVGMELEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G + G V S+ +GAF+D+GG++GL+HVS++S + V++
Sbjct: 194 TQSEVRQTFLNQLQKGQIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEVVE 253
Query: 310 PGDTLKV 316
G + V
Sbjct: 254 VGTPVTV 260
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G +VDI + +LP A + +++ V + G++ E II ++
Sbjct: 126 VSGSVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGMELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ QLQ + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRQTFLNQLQKGQIR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K E++ G + ++ +EVD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPNEVVEVGTPVTVEVLEVDMDRERVSLSLKATQEDPWQTFARLHQIGQIVPG 299
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ +G GI GL+HVS+++ V V+ GD + V
Sbjct: 300 KVTKLVPFGAFVRVGDGIEGLVHVSELAERHVEIPEQVVSVGDEVMV 346
>gi|254723673|ref|ZP_05185459.1| 30S ribosomal protein S1 [Bacillus anthracis str. A1055]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEEND--LVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILLGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|228984676|ref|ZP_04144849.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
gi|228775070|gb|EEM23463.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
tochigiensis BGSC 4Y1]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|229166441|ref|ZP_04294197.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
gi|228617015|gb|EEK74084.1| 30S ribosomal protein S1 [Bacillus cereus AH621]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
DD LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEDDDLVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFADYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G + V
Sbjct: 188 EGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVNV 240
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 116/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFADYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E +V+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A + ++
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVNVKVLSVDADTQRISLSIKAAQPGPWENVAGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|229029277|ref|ZP_04185367.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
gi|228732025|gb|EEL82917.1| 30S ribosomal protein S1 [Bacillus cereus AH1271]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + +L G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGELKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+++ G+ GL+HVSQI++ V + + VL+ G +KV
Sbjct: 290 FVEVLPGVEGLVHVSQIANRHVKNPSEVLEMGQEVKV 326
>gi|229155163|ref|ZP_04283275.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
gi|228628290|gb|EEK85005.1| 30S ribosomal protein S1 [Bacillus cereus ATCC 4342]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326
>gi|390559271|ref|ZP_10243622.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
gi|390174148|emb|CCF82915.1| RNA binding S1 domain protein [Nitrolancetus hollandicus Lb]
Length = 459
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 21/237 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE-EFVIIGE 158
G ++G V D LVDI +KS +P++E + E A + G FV+ E
Sbjct: 48 GDVIEGQVMHVDRDELLVDIGSKSEGVIPSRE--FSTLTDEERARLSVGDHVLVFVVQAE 105
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
N+ + VLS+ + E +W ++ +++ +V NKGG++ ++G+RGFVP SQ
Sbjct: 106 NQ-EGHAVLSIDRARQEKSWRLLQEAFEGGDIIEAQVTNYNKGGLLVNLDGVRGFVPASQ 164
Query: 219 I---------SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQ 261
+ S ++ L+G LPLK +E++ ++RL+LS R+A+ + + +
Sbjct: 165 VTEIRGGDEGSKQADMSRLIGSRLPLKIIEINRHRNRLILSERQAVQEKRDVMKERLIEE 224
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L G G V S+ +GAF+DIGG +GL+H+S++S RV A VL+ G+ + V +
Sbjct: 225 LHEGETRRGRVTSICDFGAFVDIGGADGLVHLSELSWSRVKHPAEVLKVGEEVDVYV 281
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
II N + L+LS R + ++ ER + E +G+V G ++ G
Sbjct: 192 IIEINRHRNRLILSERQAVQEKRDVMKERLIEELHEGETRRGRVTSICDFGAFVDIGGAD 251
Query: 212 GFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI--- 264
G V S++S K AE L +G+++ + + ++ + ++ LS ++ A+ +Q+ +
Sbjct: 252 GLVHLSELSWSRVKHPAEVLKVGEEVDVYVLGINANEKKIALSIKRTQAEPWSQVAVKYE 311
Query: 265 -GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
G +V GTV L +GAF I G+ GL+HVS++S R+A + G L
Sbjct: 312 VGQLVRGTVTQLANFGAFARIEDGVEGLIHVSELSEQRIAHPRQAVSEGQEL 363
>gi|47565960|ref|ZP_00236998.1| ribosomal protein S1 [Bacillus cereus G9241]
gi|47556877|gb|EAL15207.1| ribosomal protein S1 [Bacillus cereus G9241]
Length = 382
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|354582632|ref|ZP_09001533.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
gi|353198924|gb|EHB64390.1| RNA binding S1 domain protein [Paenibacillus lactis 154]
Length = 407
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V I K +P +E ++ + +A + G + E ++ N
Sbjct: 28 GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDA-VQVGQEVECKVVSIN 86
Query: 160 EADDSLVLSLRMIQYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ +SLVLS R I E AW+ + +++DV + V KGG+VA+V G RGF+P S
Sbjct: 87 DDKESLVLSKRAIDAENAWDELEKHFEAQDVF-EVTVADVVKGGLVADV-GARGFIPASM 144
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVV 268
+ + + G+ L +K E+D E ++++LS + + A+ Q A+L G V+
Sbjct: 145 VERHFVEDFSDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMAELKEGQVL 204
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ + V + VL GD ++V
Sbjct: 205 EGTVQRLTQFGAFVDVGGVDGLVHVSEIAWNHVDKPSDVLSEGDQVRV 252
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V++G V + G +V G+ G V S+I+ ++L G + +K ++VD E+
Sbjct: 203 VLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWNHVDKPSDVLSEGDQVRVKVLKVDPEKG 262
Query: 246 RLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + A + Q G +V G V+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 263 KISLSIKAAGPGPWETAGEQFHTGDIVTGVVKRLVSFGAFVELAPGVEGLVHISQISHKH 322
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G ++V
Sbjct: 323 IGTPQEVLKEGQEVQV 338
>gi|423576686|ref|ZP_17552805.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
gi|401207682|gb|EJR14461.1| ribosomal protein S1 [Bacillus cereus MSX-D12]
Length = 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 127/233 (54%), Gaps = 22/233 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
++G V G+V + + LV++ K+ +P E H+E+A V L + +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 158 ENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+D LVLS R + E AW E+ DV VK V GG+V ++ G+RGF
Sbjct: 73 IKLEEDDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVRGF 127
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI---- 264
+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 128 IPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISSLK 187
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 188 EGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 109/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A +G G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|337285521|ref|YP_004624994.1| 30S ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
gi|335358349|gb|AEH44030.1| ribosomal protein S1 [Thermodesulfatator indicus DSM 15286]
Length = 567
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 112/227 (49%), Gaps = 14/227 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G + G V D +DI KS PT E E + PG + E +I
Sbjct: 30 GEVLTGKVLRVDPEWVFIDIGYKSEGVAPTTEFTGPN----GEVKVKPGDEVEILIENLR 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ- 218
D + ++ + +Q AW + Q Q ++ V+ KGG ++EGL+ F+PFSQ
Sbjct: 86 TPDGMVRVAYKKLQRRRAWNKIEQAQKNKTPLEAYVLERIKGGFAVDIEGLKAFLPFSQA 145
Query: 219 -ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ EE++G L ++ V VD +++ +V+S+R + + L G V+
Sbjct: 146 FLKPPKNPEEIIGTTLKVEVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLEEGQVLE 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+S+ YG F+D+GG++GLLHVS IS RV + + GD +KV
Sbjct: 206 GTVKSITDYGVFVDLGGVDGLLHVSDISWGRVKHPSNYFKVGDKIKV 252
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 125/260 (48%), Gaps = 18/260 (6%)
Query: 68 YERCRTAPMEGVS-FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY 126
Y+R + G+ T + + + EKY G +++G V N GA V++
Sbjct: 257 YDREKEKIALGIKQLTPDPWETVAEKYP----EGKRIEGKVVSLTNFGAFVELEPGVEGL 312
Query: 127 LPTQE-ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ 185
+ E + +IKH + V G K E V++G + + + LSL+ ++ W+ +
Sbjct: 313 IHISELSWTKRIKHPRDILEV-GDKVEVVVLGVDSENRRVSLSLKQVEPN-PWDVLVEQF 370
Query: 186 SEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQISS---KSTAEELLGKDLPLKFV-EV 240
SE +V++ V GV EV EG+ GF+ S +S K +E D+ + ++
Sbjct: 371 SEGMVIEAPVKTVTDFGVFVEVMEGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVILKI 430
Query: 241 DEEQSRLVLSNRKAMADSQA----QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQ 295
D E+ +L L ++ D + +GSVV G V ++ +G F+++ G+ GL+HVS+
Sbjct: 431 DREKEKLALGVKQLTPDPWESVPEKYPVGSVVTGKVSNVTDFGVFVELEEGVEGLVHVSE 490
Query: 296 ISHDRVADIATVLQPGDTLK 315
IS +V + +PG +K
Sbjct: 491 ISDKKVKTPVGMFEPGQEVK 510
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 149/351 (42%), Gaps = 50/351 (14%)
Query: 11 LRCPP----ISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQL--- 63
LR P +++ +L RR++ +I+Q ++KNKT + A + + ++ L
Sbjct: 84 LRTPDGMVRVAYKKLQRRRAWNKIEQ----AQKNKTPLEAYVLERIKGGFAVDIEGLKAF 139
Query: 64 --FEEAYERCRTAPMEGVSFTLE---------------------EFHSALEKYDF--NSE 98
F +A+ + P E + TL+ E S K + N E
Sbjct: 140 LPFSQAFLKPPKNPEEIIGTTLKVEVVSVDRKKNNVVVSHRNYLEKESERRKKELLENLE 199
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G ++GTV + G VD+ L + ++KH V G K + +I
Sbjct: 200 EGQVLEGTVKSITDYGVFVDLGG-VDGLLHVSDISWGRVKHPSNYFKV-GDKIKVKVIKY 257
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
+ + + L ++ + + WE + E ++GKVV G E+E G+ G + S
Sbjct: 258 DREKEKIALGIKQLTPD-PWETVAEKYPEGKRIEGKVVSLTNFGAFVELEPGVEGLIHIS 316
Query: 218 QISSKSTAEEL-----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVV 268
++S + +G + + + VD E R+ LS ++ + Q G V+
Sbjct: 317 ELSWTKRIKHPRDILEVGDKVEVVVLGVDSENRRVSLSLKQVEPNPWDVLVEQFSEGMVI 376
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V+++ +G F+++ GI+G +HVS +S R+ + +PGD ++ +
Sbjct: 377 EAPVKTVTDFGVFVEVMEGIDGFIHVSDLSWGRIKHPSEAYKPGDMIQAVI 427
>gi|300117474|ref|ZP_07055264.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
gi|298725309|gb|EFI65961.1| 30S ribosomal protein S1 [Bacillus cereus SJ1]
Length = 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEEND--LVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIGGEVK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|323691603|ref|ZP_08105866.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|355625904|ref|ZP_09048460.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
gi|323504329|gb|EGB20128.1| RNA binding S1 domain-containing protein [Clostridium symbiosum
WAL-14673]
gi|354821131|gb|EHF05527.1| hypothetical protein HMPREF1020_02539 [Clostridium sp. 7_3_54FAA]
Length = 337
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++ ++ + ++VLS++ ++AW+R R + E VV K+ G +A++EG+RGF+
Sbjct: 116 VLKTDDGEGNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFI 175
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S++ + E+ LG+ + + + DEE ++LVLS R+A + A+ +
Sbjct: 176 PASRLDAAYVENLEDFLGRTIDVTVITADEEHNKLVLSGREAAREKLQEEKKRRIAKCEV 235
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G ++ GTV S+KPYGAFI + G++GL+H+SQIS R+ + VL+ G + V +
Sbjct: 236 GVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIPHPSAVLKEGQKVTVKI 290
>gi|52143850|ref|YP_082978.1| 30S ribosomal protein S1 [Bacillus cereus E33L]
gi|51977319|gb|AAU18869.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus cereus
E33L]
Length = 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIGGEIK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|169827482|ref|YP_001697640.1| 30S ribosomal protein S1 [Lysinibacillus sphaericus C3-41]
gi|168991970|gb|ACA39510.1| 30S ribosomal protein S1-like protein [Lysinibacillus sphaericus
C3-41]
Length = 378
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
FN G VKG D + V I A +P E H+E+A V + +E
Sbjct: 12 FNE--GDIVKGIAEQVDEKAVSVSIPGAPFDGIIPISELSS---LHIEKASDVISVGDEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ +++ VLS R + AW+ Q + + + +V KGG+V ++ G+RGF
Sbjct: 67 ELMITKVEEENFVLSKRKVDALKAWDTLEQQFTAGEIFEAEVKDIVKGGLVVDL-GVRGF 125
Query: 214 VPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S + E GK L K VE+D+E++RL+LS+R + +A Q+
Sbjct: 126 VPASLVEDYFVDDFEGYKGKSLSFKIVELDKEKNRLILSHRAVVESEKASQKKDVINQIK 185
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAFID+GGI+GL+H+SQ+SH+ V+D++ VL G + V
Sbjct: 186 AGDVLDGKVQRLASFGAFIDLGGIDGLVHISQVSHEHVSDVSEVLSEGQGVTV 238
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 98/177 (55%), Gaps = 14/177 (7%)
Query: 153 FVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVVAEVE 208
F I+ ++ + L+LS R +++ E A ++ Q+++ DV+ GKV G ++
Sbjct: 149 FKIVELDKEKNRLILSHRAVVESEKASQKKDVINQIKAGDVL-DGKVQRLASFGAFIDLG 207
Query: 209 GLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQA 260
G+ G V SQ+S + S E+L G+ + +K + VD E R+ LS ++ + ++ +
Sbjct: 208 GIDGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPENERISLSIKETIPGPWSNIEE 267
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+++ G V+ L +GAF+++ G+ GL+H+SQI+H + L+ G ++V
Sbjct: 268 RAAKGTILEGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQDVQV 324
>gi|30261593|ref|NP_843970.1| 30S ribosomal protein S1 [Bacillus anthracis str. Ames]
gi|47526793|ref|YP_018142.1| 30S ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
gi|49184425|ref|YP_027677.1| 30S ribosomal protein S1 [Bacillus anthracis str. Sterne]
gi|49477253|ref|YP_035714.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|65318864|ref|ZP_00391823.1| COG0539: Ribosomal protein S1 [Bacillus anthracis str. A2012]
gi|118477052|ref|YP_894203.1| 30S ribosomal protein S1 [Bacillus thuringiensis str. Al Hakam]
gi|165869571|ref|ZP_02214230.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
gi|167633256|ref|ZP_02391581.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
gi|167639190|ref|ZP_02397463.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
gi|170686252|ref|ZP_02877474.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
gi|170706479|ref|ZP_02896939.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
gi|177650520|ref|ZP_02933487.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
gi|190568598|ref|ZP_03021503.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
gi|196033526|ref|ZP_03100938.1| ribosomal protein S1 [Bacillus cereus W]
gi|196046631|ref|ZP_03113855.1| ribosomal protein S1 [Bacillus cereus 03BB108]
gi|218902709|ref|YP_002450543.1| 30S ribosomal protein S1 [Bacillus cereus AH820]
gi|225863461|ref|YP_002748839.1| ribosomal protein S1 [Bacillus cereus 03BB102]
gi|227815655|ref|YP_002815664.1| 30S ribosomal protein S1 [Bacillus anthracis str. CDC 684]
gi|228914171|ref|ZP_04077789.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228926628|ref|ZP_04089697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228932883|ref|ZP_04095750.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228945197|ref|ZP_04107553.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|229090559|ref|ZP_04221794.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
gi|229121140|ref|ZP_04250377.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
gi|229183792|ref|ZP_04311009.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
gi|229604611|ref|YP_002866001.1| 30S ribosomal protein S1 [Bacillus anthracis str. A0248]
gi|254683085|ref|ZP_05146946.1| 30S ribosomal protein S1 [Bacillus anthracis str. CNEVA-9066]
gi|254733536|ref|ZP_05191257.1| 30S ribosomal protein S1 [Bacillus anthracis str. Western North
America USA6153]
gi|254740845|ref|ZP_05198533.1| 30S ribosomal protein S1 [Bacillus anthracis str. Kruger B]
gi|254755083|ref|ZP_05207117.1| 30S ribosomal protein S1 [Bacillus anthracis str. Vollum]
gi|254759620|ref|ZP_05211644.1| 30S ribosomal protein S1 [Bacillus anthracis str. Australia 94]
gi|301053136|ref|YP_003791347.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
gi|376265440|ref|YP_005118152.1| 30S ribosomal protein S1 [Bacillus cereus F837/76]
gi|386735301|ref|YP_006208482.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
gi|421638607|ref|ZP_16079202.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
gi|423552668|ref|ZP_17528995.1| ribosomal protein S1 [Bacillus cereus ISP3191]
gi|30255447|gb|AAP25456.1| ribosomal protein S1 [Bacillus anthracis str. Ames]
gi|47501941|gb|AAT30617.1| ribosomal protein S1 [Bacillus anthracis str. 'Ames Ancestor']
gi|49178352|gb|AAT53728.1| ribosomal protein S1 [Bacillus anthracis str. Sterne]
gi|49328809|gb|AAT59455.1| ribosomal protein S1 (30S ribosomal protein S1) [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|118416277|gb|ABK84696.1| SSU ribosomal protein S1P [Bacillus thuringiensis str. Al Hakam]
gi|164715011|gb|EDR20529.1| ribosomal protein S1 [Bacillus anthracis str. A0488]
gi|167512980|gb|EDR88353.1| ribosomal protein S1 [Bacillus anthracis str. A0193]
gi|167531294|gb|EDR93972.1| ribosomal protein S1 [Bacillus anthracis str. A0442]
gi|170128577|gb|EDS97444.1| ribosomal protein S1 [Bacillus anthracis str. A0389]
gi|170669949|gb|EDT20690.1| ribosomal protein S1 [Bacillus anthracis str. A0465]
gi|172083664|gb|EDT68724.1| ribosomal protein S1 [Bacillus anthracis str. A0174]
gi|190560198|gb|EDV14178.1| ribosomal protein S1 [Bacillus anthracis str. Tsiankovskii-I]
gi|195993960|gb|EDX57916.1| ribosomal protein S1 [Bacillus cereus W]
gi|196022564|gb|EDX61247.1| ribosomal protein S1 [Bacillus cereus 03BB108]
gi|218535461|gb|ACK87859.1| ribosomal protein S1 [Bacillus cereus AH820]
gi|225787178|gb|ACO27395.1| ribosomal protein S1 [Bacillus cereus 03BB102]
gi|227004701|gb|ACP14444.1| ribosomal protein S1 [Bacillus anthracis str. CDC 684]
gi|228599641|gb|EEK57244.1| 30S ribosomal protein S1 [Bacillus cereus BGSC 6E1]
gi|228662259|gb|EEL17862.1| 30S ribosomal protein S1 [Bacillus cereus 95/8201]
gi|228692762|gb|EEL46486.1| 30S ribosomal protein S1 [Bacillus cereus Rock3-42]
gi|228814432|gb|EEM60697.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar monterrey
BGSC 4AJ1]
gi|228826804|gb|EEM72571.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228833004|gb|EEM78572.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228845504|gb|EEM90537.1| 30S ribosomal protein S1 [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229269019|gb|ACQ50656.1| ribosomal protein S1 [Bacillus anthracis str. A0248]
gi|300375305|gb|ADK04209.1| 30S ribosomal protein S1 [Bacillus cereus biovar anthracis str. CI]
gi|364511240|gb|AEW54639.1| SSU ribosomal protein S1p [Bacillus cereus F837/76]
gi|384385153|gb|AFH82814.1| 30S ribosomal protein S1 [Bacillus anthracis str. H9401]
gi|401186610|gb|EJQ93698.1| ribosomal protein S1 [Bacillus cereus ISP3191]
gi|403394134|gb|EJY91375.1| 30S ribosomal protein S1 [Bacillus anthracis str. BF1]
Length = 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEEND--LVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|325846468|ref|ZP_08169383.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325481226|gb|EGC84267.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 692
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GT+ + VDI ++ + E + ++ ++ V G + E +I ++ +
Sbjct: 299 VNGTIIDVKDDEVFVDIQYRADGIVKLDEMTEEEKENPKDHFEV-GQEIEVYVIKLDDGE 357
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
++ LS R ++ W+ R+ D V+G + G+NKGG+ A V G+ GFVP SQI+
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAPY 417
Query: 223 --STAEELLGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLK 276
++ +G+ LK + +DE ++RLVLS + + + + +L G V+ G V L
Sbjct: 418 FVKNFKKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLT 477
Query: 277 PYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAF++IG ++GLLHVS I+ RV VL GD ++V
Sbjct: 478 DFGAFVEIGSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEV 517
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 13/214 (6%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
N+G L + ++P + + +K+ ++ G + II +E + LVLS +
Sbjct: 394 NKGGLTARVMGINGFVPASQIAPYFVKNFKK---FVGEHWDLKIISIDERKNRLVLSRKD 450
Query: 172 IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL--- 228
I E E+ +L+ E V+ GKV G E+ L G + S I+
Sbjct: 451 IVEEKLDEQWDELE-EGQVITGKVARLTDFGAFVEIGSLDGLLHVSDIAWTRVEHPKDVL 509
Query: 229 -LGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGAFID 283
+G D+ +K +++++E++R+ L + K A+ +G V+ G V +L +GAF++
Sbjct: 510 NIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVE 569
Query: 284 IG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+ GL+HVS+IS + V + L GD ++V
Sbjct: 570 VSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEV 603
>gi|423408547|ref|ZP_17385696.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
gi|401657637|gb|EJS75145.1| ribosomal protein S1 [Bacillus cereus BAG2X1-3]
Length = 382
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEEND--LVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ +G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKVGDIREGVVKRLATFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|212696092|ref|ZP_03304220.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
gi|212676721|gb|EEB36328.1| hypothetical protein ANHYDRO_00628 [Anaerococcus hydrogenalis DSM
7454]
Length = 692
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 118/220 (53%), Gaps = 7/220 (3%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GT+ + VDI ++ + E + ++ ++ V G + E +I ++ +
Sbjct: 299 VNGTIIDVKDDEVFVDIQYRADGIVKLDEMTEEEKENPKDHFEV-GQEIEVYVIKLDDGE 357
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
++ LS R ++ W+ R+ D V+G + G+NKGG+ A V G+ GFVP SQI+
Sbjct: 358 GNVALSTRRVEGMKNWKNLREAFENDQTVEGDITGSNKGGLTARVMGINGFVPASQIAPY 417
Query: 223 --STAEELLGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLK 276
++ +G+ LK + +DE ++RLVLS + + + + +L G V+ G V L
Sbjct: 418 FVKNFKKFVGEHWDLKIISIDERKNRLVLSRKDIVEEKLDEQWDELEEGQVITGKVARLT 477
Query: 277 PYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAF++IG ++GLLHVS I+ RV VL GD ++V
Sbjct: 478 DFGAFVEIGSLDGLLHVSDIAWTRVEHPKDVLNIGDDIEV 517
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/214 (26%), Positives = 105/214 (49%), Gaps = 13/214 (6%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
N+G L + ++P + + +K+ ++ G + II +E + LVLS +
Sbjct: 394 NKGGLTARVMGINGFVPASQIAPYFVKNFKK---FVGEHWDLKIISIDERKNRLVLSRKD 450
Query: 172 IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL--- 228
I E E+ +L+ E V+ GKV G E+ L G + S I+
Sbjct: 451 IVEEKLDEQWDELE-EGQVITGKVARLTDFGAFVEIGSLDGLLHVSDIAWTRVEHPKDVL 509
Query: 229 -LGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQLGIGSVVIGTVQSLKPYGAFID 283
+G D+ +K +++++E++R+ L + K A+ +G V+ G V +L +GAF++
Sbjct: 510 NIGDDIEVKILKLNKEKNRISLGRKQLLEKPFAEFTNNHEVGDVINGKVVNLLDFGAFVE 569
Query: 284 IG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+ GL+HVS+IS + V + L GD ++V
Sbjct: 570 VSEGVEGLIHVSEISWEHVEKPSDELTVGDEVEV 603
>gi|152975021|ref|YP_001374538.1| 30S ribosomal protein S1 [Bacillus cytotoxicus NVH 391-98]
gi|152023773|gb|ABS21543.1| RNA binding S1 domain protein [Bacillus cytotoxicus NVH 391-98]
Length = 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 129/232 (55%), Gaps = 20/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V + + E
Sbjct: 16 QVGDIVTGSVIKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVEVDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+I E D LVLS R + E AW ++ + V V GG+V ++ G+RGF+
Sbjct: 72 VIKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGEVFDVTVNDIVNGGLVVDL-GVRGFI 128
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI----- 264
P S + + E GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 129 PASLVEVHYVEDFTEYKGKTLAVKIVELDREKNRVILSHKAVVEQELDSKKKEAISSLKE 188
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 189 GEIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVGQPSDVLEQGQKVKV 240
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 23/220 (10%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTEYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E +V+G V G V G+ G V SQIS + +
Sbjct: 170 VVEQELDSKKKEAISSLKEGEIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVGQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA-------MADSQAQLGIGSVVIGTVQSLKP 277
++L G+ + +K + VD + R+ LS + A +AD ++ +G V GTV +
Sbjct: 230 DVLEQGQKVKVKVLSVDADTQRISLSIKAAAPGPWEHVAD---EIKVGDVREGTVNRIVT 286
Query: 278 YGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 287 FGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEIGQEVKV 326
>gi|227875377|ref|ZP_03993518.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
gi|269977367|ref|ZP_06184340.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
gi|306818692|ref|ZP_07452414.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
gi|307700853|ref|ZP_07637878.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
gi|227843931|gb|EEJ54099.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35243]
gi|269934670|gb|EEZ91231.1| 30S ribosomal protein S1 [Mobiluncus mulieris 28-1]
gi|304648378|gb|EFM45681.1| 30S ribosomal protein S1 [Mobiluncus mulieris ATCC 35239]
gi|307613848|gb|EFN93092.1| 30S ribosomal protein S1 [Mobiluncus mulieris FB024-16]
Length = 489
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V GTV D L+DI K+ + ++E I H + EE + G +
Sbjct: 32 KY-FND--GDLVTGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPDEEVKV--GDE 86
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ D VV G V+ KGG++ ++ GL
Sbjct: 87 IEALVLQKEDKEGRLLLSKKRAQYERAWGDVEKIKEADGVVTGTVIEVVKGGLILDI-GL 145
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +G+ L K +E+D+ ++ +VLS R + +Q++
Sbjct: 146 RGFLPASLVEMRRVRDLAPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLS 205
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+Q G + V
Sbjct: 206 TLQKGQVRTGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTV 261
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 127 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGRQLETKIIELDKNR 181
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ LQ V G V G ++ G+ G V S+
Sbjct: 182 NNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVRT-GVVSSIVNFGAFVDLGGVDGLVHVSE 240
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 241 LSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQIVPG 300
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+G F+ + GI GL+HVS+++ + V + GD + V
Sbjct: 301 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHIEVPEQVAKIGDEIFV 347
>gi|423397689|ref|ZP_17374890.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
gi|401649735|gb|EJS67313.1| ribosomal protein S1 [Bacillus cereus BAG2X1-1]
Length = 382
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 131/236 (55%), Gaps = 28/236 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
+I E D LVLS R + E AW E+ DV VK V GG+V ++ G+
Sbjct: 72 VIKLEEND--LVLSKRAVDAEKAWVALQEKFTSGHVFDVTVKDIV----NGGLVVDL-GV 124
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI- 264
RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 125 RGFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAIS 184
Query: 265 ----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 185 SLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 111/217 (51%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ +G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKVGDIREGVVKRLATFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|339627836|ref|YP_004719479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Sulfobacillus
acidophilus TPY]
gi|379007470|ref|YP_005256921.1| RNA binding S1 domain-containing protein [Sulfobacillus acidophilus
DSM 10332]
gi|339285625|gb|AEJ39736.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Sulfobacillus acidophilus TPY]
gi|361053732|gb|AEW05249.1| RNA binding S1 domain protein [Sulfobacillus acidophilus DSM 10332]
Length = 416
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 126/227 (55%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++G V N G LVD+ AKS + ++ +++ EE + + +V+ E
Sbjct: 39 GDILQGKVVHISNDGVLVDVGAKSEGIIHLRDLSYRRVERPEEVVHLGDVISVYVVGYEG 98
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E + +L LS + +AWER + Q +++ VV KGG+V +V GLRGFVP S +
Sbjct: 99 E-EGTLKLSKKKADERVAWERLEEAQRNGEILEAPVVEVVKGGLVVDV-GLRGFVPASLV 156
Query: 220 SSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQ-------LGIGSVVI 269
+ S LG+ L +K VE+D + R +LS + + +S+A+ + G +
Sbjct: 157 APGFISDLTPFLGQTLRVKVVELDRNKRRAILSRKDVVEQESKAKQEEIWSKIAEGQIWE 216
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+SL +GAFID+GG++GLLH+S++S R+ + +L+ G ++V
Sbjct: 217 GTVKSLTEFGAFIDLGGVDGLLHISEMSWHRINHPSEILEVGQKVRV 263
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 76/140 (54%), Gaps = 9/140 (6%)
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVD 241
+E + +G V + G ++ G+ G + S++S + E+L G+ + +K + ++
Sbjct: 210 AEGQIWEGTVKSLTEFGAFIDLGGVDGLLHISEMSWHRINHPSEILEVGQKVRVKVLRLN 269
Query: 242 EEQSRLVLSNRKAMA---DSQAQLGI-GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQI 296
E+ ++ L R+ D+ A+ + G + GTV L +G F+ + G++GL+H+SQ+
Sbjct: 270 PEKGKISLGLRQVEGNPWDTVAERYLEGRIYRGTVVRLASFGVFVQLEPGVDGLVHISQL 329
Query: 297 SHDRVADIATVLQPGDTLKV 316
+ RV + + V+Q GD + V
Sbjct: 330 ADYRVGEPSEVVQVGDEIAV 349
>gi|329929826|ref|ZP_08283502.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
gi|328935804|gb|EGG32265.1| putative ribosomal protein S1 [Paenibacillus sp. HGF5]
Length = 405
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 125/227 (55%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V I K +P +E ++ + +A + G + E ++ N
Sbjct: 26 GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDA-VQVGQEVECKVVSIN 84
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ +SLVLS R I E +WE + ++ V + V KGG+VA+V G RGF+P S +
Sbjct: 85 DDKESLVLSKRAIDTENSWEELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIPASMV 143
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVVI 269
+ + G+ L +K E+D E ++++LS + + A+ Q ++L G V+
Sbjct: 144 ERHFVEDFSDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLE 203
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + VL GD ++V
Sbjct: 204 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRV 250
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQI--SSKSTAEELL--GKDLPLKFVEVDEEQS 245
V++G V + G +V G+ G V S+I S ++L G + +K ++VD E+
Sbjct: 201 VLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKG 260
Query: 246 RLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + A + Q G +V G V+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 261 KISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKH 320
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G ++V
Sbjct: 321 IGTPQEVLKEGQEVQV 336
>gi|379735729|ref|YP_005329235.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
gi|378783536|emb|CCG03204.1| 30S ribosomal protein S1 [Blastococcus saxobsidens DD2]
Length = 495
Score = 109 bits (273), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 137/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
+ E+F +A++ KY FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 21 SAEDFLAAIDLTIKY-FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW + D VV G V+
Sbjct: 78 DPNEVVKV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEAKKEADEVVTGTVIE 135
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R+ +
Sbjct: 136 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRQWL 194
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 195 EQTQSEVRSEFLNKLAKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 254
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 255 VEVGQEVTV 263
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 110/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E +L ++ V G V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRQWLEQTQSEVRSEFLNKL-AKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D Q IG VV G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRQFARTHQIGQVVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD + V
Sbjct: 303 KVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGDEILV 349
>gi|427414340|ref|ZP_18904530.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
gi|425714716|gb|EKU77719.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
ratti ACS-216-V-Col6b]
Length = 631
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 22/254 (8%)
Query: 82 TLEEFHSAL-EKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T+ EF L + D+ + GT V+GTV ++ A V K+ A L E I
Sbjct: 272 TMNEFEQLLANEADWAEDFKKGTVVEGTVVSVEDDKAYVSFGYKTEATLNRTE-----IA 326
Query: 139 HVEEAGIVPGLKE----EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+ A LKE + VI+ + D+ + LS+ + + W+ ++ Q +D + K
Sbjct: 327 YPAPASAKDVLKEGDQIKAVIMNHIKEDNPIYLSITRLAKDEDWQYVQEAQEKDEPIICK 386
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
V A G+V V+ LRGF+P SQ + + + L+G + K +E+DE+++RLVLS R
Sbjct: 387 GVDAIPAGLVVTVKSLRGFIPLSQGDVHFVKSLDSLVGTEFEAKVLEIDEKKNRLVLSRR 446
Query: 253 KAM-ADSQAQL-------GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+ QA+L +G G V+ + PYGAF+DIGGI GLLH+S IS ++ +
Sbjct: 447 AVLEVARQAKLEEALKNINVGDNYKGIVRKIMPYGAFVDIGGIEGLLHISDISWHKIKRV 506
Query: 305 ATVLQPGDTLKVCL 318
VL G ++V L
Sbjct: 507 EDVLSVGQEIEVKL 520
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R +
Sbjct: 397 VTVKSLRGFIPLSQGDVHFVKSLDS---LVGTEFEAKVLEIDEKKNRLVLSRRAV----- 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
E RQ + E+ + K VG N G+V ++ G+ G + S IS E
Sbjct: 449 LEVARQAKLEEAL-KNINVGDNYKGIVRKIMPYGAFVDIGGIEGLLHISDISWHKIKRVE 507
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA+ S + + +G V+ G V L YG
Sbjct: 508 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALTKSPWDVAEETIKVGDVLTGKVVRLVAYG 566
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 567 AFVAVNDDIQGLLHISQITKQRNAKVEDYLTRGKEVEV 604
>gi|406665703|ref|ZP_11073475.1| 30S ribosomal protein S1 [Bacillus isronensis B3W22]
gi|405386568|gb|EKB45995.1| 30S ribosomal protein S1 [Bacillus isronensis B3W22]
Length = 380
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 110/188 (58%), Gaps = 11/188 (5%)
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
H+E+A + + ++ ++ +++ VLS R + AW+ + V + +V
Sbjct: 53 HIEKASDIVSVGDQLELMITKVEEENFVLSKRKVDALHAWDDLKAKFESGEVFEAEVKDV 112
Query: 199 NKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG+V ++ G+RGFVP S + E+ GK L LK E+D+E+ RL+LS+R +
Sbjct: 113 VKGGLVVDL-GVRGFVPASLVEDYFVEDFEDYKGKTLRLKITELDKEKGRLILSHRAVLD 171
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+ +A + G ++ GTVQ L +GAFID+GGI+GL+H+SQ++H+ V DI+TVL
Sbjct: 172 EEKASKKQQVIQNIHQGDMLEGTVQRLAKFGAFIDLGGIDGLVHISQVAHEHVEDISTVL 231
Query: 309 QPGDTLKV 316
Q G ++ V
Sbjct: 232 QEGQSVTV 239
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 90/164 (54%), Gaps = 12/164 (7%)
Query: 165 LVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
L+LS R ++ E A ++ + +Q+ + +++G V K G ++ G+ G V SQ++
Sbjct: 162 LILSHRAVLDEEKASKKQQVIQNIHQGDMLEGTVQRLAKFGAFIDLGGIDGLVHISQVAH 221
Query: 222 KSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQAQLGIGSVVIGTVQ 273
+ + +L G+ + +K + VD R+ LS + + D + + G+++ GTV+
Sbjct: 222 EHVEDISTVLQEGQSVTVKVLSVDIPNERVSLSIKDTLPGPWTDIEEKASKGAILTGTVK 281
Query: 274 SLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +GAF+++ G+ GL+H+SQISH + VL+ G ++V
Sbjct: 282 RLVTFGAFVEVFPGVEGLVHISQISHKHITTPHEVLKDGQEVEV 325
>gi|206970547|ref|ZP_03231499.1| ribosomal protein S1 [Bacillus cereus AH1134]
gi|206734183|gb|EDZ51353.1| ribosomal protein S1 [Bacillus cereus AH1134]
Length = 382
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 128/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGCVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEE--DDLVLSKRAVDAEKAWVELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|396584066|ref|ZP_10484565.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
gi|395548355|gb|EJG15630.1| 30S ribosomal protein S1 [Actinomyces sp. ICM47]
Length = 478
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQI 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGKIEKIKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 41/223 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQV----RSGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 286 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 328
>gi|328955788|ref|YP_004373121.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
gi|328456112|gb|AEB07306.1| SSU ribosomal protein S1P [Coriobacterium glomerans PW2]
Length = 422
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 133/243 (54%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +S ++ + + G V GTV ++ LVDI KS +P +E I K E
Sbjct: 18 EEMNSLIDGTITDFDEGDLVSGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRKDADPSEL 77
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G E +++ + + D LVLS + +YE AW R + + V+G+V+ KGG+
Sbjct: 78 -VSVGDPIEALVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNTGENVEGEVIEVVKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + +G + + +E+D ++ +VLS R + +S+
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDLTSYMGTSIEARVIEMDRNRNNVVLSRRVVLEESRKA 195
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
++L G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 196 ERSEILSKLKSGMRLTGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQE 255
Query: 314 LKV 316
++V
Sbjct: 256 VEV 258
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 117/249 (46%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRIEEKFNTGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLT 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK--------GKVV 196
G E +I + +++VLS R++ E R+ + +++ K G V
Sbjct: 161 SYMGTSIEARVIEMDRNRNNVVLSRRVV-----LEESRKAERSEILSKLKSGMRLTGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V G V L P+GAF+D+G GI GL+H+S++++ V + V
Sbjct: 276 QTTEDPWRALVKKYPVGAIVEGRVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQV 335
Query: 308 LQPGDTLKV 316
+ + ++V
Sbjct: 336 IHTNEAVQV 344
>gi|323482961|ref|ZP_08088359.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
gi|323403741|gb|EGA96041.1| ribosomal protein S1 [Clostridium symbiosum WAL-14163]
Length = 337
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 104/175 (59%), Gaps = 11/175 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++ ++ + ++VLS++ ++AW+R R + E VV K+ G +A++EG+RGF+
Sbjct: 116 VLKTDDGEGNIVLSMKEANDKMAWDRLRTMLEERTVVPVKITEIVNSGAIAQIEGMRGFI 175
Query: 215 PFSQISS--KSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S++ + E+ LG+ + + + DEE ++LVLS R+A + A+ +
Sbjct: 176 PASRLDAVYVENLEDFLGRTIDVTVITADEEHNKLVLSGREAAREKLQEEKKRRIAKCEV 235
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G ++ GTV S+KPYGAFI + G++GL+H+SQIS R+ + VL+ G + V +
Sbjct: 236 GVIMDGTVDSIKPYGAFISLENGLSGLVHISQISSKRIPHPSAVLKEGQKVTVKI 290
>gi|160934311|ref|ZP_02081698.1| hypothetical protein CLOLEP_03182 [Clostridium leptum DSM 753]
gi|156866984|gb|EDO60356.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
leptum DSM 753]
Length = 686
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 120/227 (52%), Gaps = 11/227 (4%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
KV G V VD+ K + ++P E E+ + G + + +I+ N+
Sbjct: 315 KVHGVVVGIAPNEIYVDVGRKQAGFVPLAELSADPNAKAEDL-VKIGDEMDLLIMRTNDQ 373
Query: 162 DDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
+ +++LS + + WE + + VV G V KGGV+A G+R F+P SQ ++
Sbjct: 374 EGTIMLSKKRLDAIKGWEEIVEANENETVVTGIVTEVIKGGVIAVTNGVRVFIPASQATA 433
Query: 222 K--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG--------IGSVVIGT 271
+ E+LL +++ + +EV+ + R V S R + D + +L IG V GT
Sbjct: 434 SRGDSLEDLLKQEVKFRIIEVNRGRRRAVGSIRSVLKDERKKLAEKFWETAEIGKVYTGT 493
Query: 272 VQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V+SL YGAF+D+GGI+G++H+S++S R+ + ++ GDT++V +
Sbjct: 494 VKSLTSYGAFVDLGGIDGMVHISELSWSRIKHPSEIVNVGDTVEVYI 540
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEE--FVIIGENEADDSLVLSLR 170
+G ++ +T ++P +A + +E+ LK+E F II N V S+R
Sbjct: 412 KGGVIAVTNGVRVFIPASQATASRGDSLEDL-----LKQEVKFRIIEVNRGRRRAVGSIR 466
Query: 171 MI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KS 223
+ + +LA E+ + V G V G ++ G+ G V S++S K
Sbjct: 467 SVLKDERKKLA-EKFWETAEIGKVYTGTVKSLTSYGAFVDLGGIDGMVHISELSWSRIKH 525
Query: 224 TAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPY 278
+E + +G + + ++D E+ ++ L +K + L +GSVV TV + +
Sbjct: 526 PSEIVNVGDTVEVYIKDLDPEKGKISLGYKKTEDNPWEILKRDYPVGSVVEVTVVGMTTF 585
Query: 279 GAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
GAF I GI+GL+H+SQI+ R+ VL GD +KV +
Sbjct: 586 GAFARILPGIDGLIHISQIADHRIEKPQDVLAIGDVVKVAI 626
>gi|365824972|ref|ZP_09366932.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
gi|365259160|gb|EHM89155.1| 30S ribosomal protein S1 [Actinomyces graevenitzii C83]
Length = 487
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 127/227 (55%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V+GTV D L+DI K+ + ++E I EE + G + E +++ +
Sbjct: 39 GDIVEGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVDPEEI-VAVGDEIEALVLQKE 97
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLRGF+P S +
Sbjct: 98 DKEGRLLLSKKRAQYERAWGQIEKIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASLV 156
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 157 EMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVRS 216
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 217 GVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 263
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 184 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 231
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 232 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 291
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 292 RAHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 349
>gi|126653373|ref|ZP_01725477.1| ribosomal protein S1, putative [Bacillus sp. B14905]
gi|126589889|gb|EAZ84020.1| ribosomal protein S1, putative [Bacillus sp. B14905]
Length = 378
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
FN G VKG D + V I A +P E H+E+A V + +E
Sbjct: 12 FNE--GDIVKGIAEQVDEKAVSVSIPGAPFDGIVPISELSS---LHIEKASDVISVGDEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ +++ VLS R + AW+ Q + + + +V KGG+V ++ G+RGF
Sbjct: 67 DLMITKVEEENFVLSKRKVDALKAWDTLEQQFTAGEIFEAEVKDIVKGGLVVDL-GVRGF 125
Query: 214 VPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S + E GK L K VE+D+E++RL+LS+R + +A Q+
Sbjct: 126 VPASLVEDYFVDDFEGYKGKTLSFKIVELDKEKNRLILSHRAVVESEKASQKQNVINQIK 185
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAFID+GGI+GL+H+SQ+SH+ V+D++ VL G + V
Sbjct: 186 AGDVLDGKVQRLASFGAFIDLGGIDGLVHISQVSHEHVSDVSEVLSEGQGVTV 238
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/177 (27%), Positives = 97/177 (54%), Gaps = 14/177 (7%)
Query: 153 FVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVVAEVE 208
F I+ ++ + L+LS R +++ E A ++ Q+++ DV+ GKV G ++
Sbjct: 149 FKIVELDKEKNRLILSHRAVVESEKASQKQNVINQIKAGDVL-DGKVQRLASFGAFIDLG 207
Query: 209 GLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQA 260
G+ G V SQ+S + S E+L G+ + +K + VD R+ LS ++ + ++ +
Sbjct: 208 GIDGLVHISQVSHEHVSDVSEVLSEGQGVTVKVLSVDPANERISLSIKETIPGPWSNIEE 267
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+++ G V+ L +GAF+++ G+ GL+H+SQI+H + L+ G ++V
Sbjct: 268 RAAKGAILDGKVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQV 324
>gi|399523751|ref|ZP_10764360.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
gi|398375296|gb|EJN52731.1| 30S ribosomal protein S1 [Atopobium sp. ICM58]
Length = 478
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQI 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGKIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 41/223 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQV----RSGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 286 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 328
>gi|383807350|ref|ZP_09962910.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
gi|383298704|gb|EIC91319.1| 30S ribosomal protein S1 [Candidatus Aquiluna sp. IMCC13023]
Length = 485
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 126/233 (54%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEF 153
FN G + GTV D L+D+ K+ +P++E I + + IV G E
Sbjct: 34 FND--GDLISGTVVKIDRDEVLLDVGYKTEGVIPSRELSIRQ--DADPNDIVKVGDAIEA 89
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ D VV G V+ KGGV+ ++ GLRGF
Sbjct: 90 LVLQKEDKEGRLILSKKRAQYERAWGDVERIKEADGVVTGTVIEVVKGGVIVDI-GLRGF 148
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S I + + LG ++ K +E+D+ ++ +VLS R + SQ++ L
Sbjct: 149 LPASLIELRRVRDLGPYLGTEVEAKILELDKNRNNVVLSRRALLEQSQSENRSTFLNDLV 208
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAFID+GG++GL+HVS++S + + V++ G + V
Sbjct: 209 KGQVRTGVVSSIVNFGAFIDLGGVDGLVHVSELSWKHIEHASEVVEVGQEVTV 261
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 114/224 (50%), Gaps = 43/224 (19%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G G + E I+ ++
Sbjct: 127 VTGTVIEVVKGGVIVDIGLR--GFLP---ASLIELRRVRDLGPYLGTEVEAKILELDKNR 181
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDV------VVKGKVVGANKGGVVA---------EV 207
+++VLS R + Q QSE+ +VKG+V + GVV+ ++
Sbjct: 182 NNVVLSRRAL--------LEQSQSENRSTFLNDLVKGQV----RTGVVSSIVNFGAFIDL 229
Query: 208 EGLRGFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL- 262
G+ G V S++S K A E++ G+++ ++ +EVD+E+ R+ LS KA + QL
Sbjct: 230 GGVDGLVHVSELSWKHIEHASEVVEVGQEVTVEVLEVDQERERVSLS-LKATQEDPWQLF 288
Query: 263 ----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
IG + G V + P+GAF+ + GI GL+H+S++S V
Sbjct: 289 ARTHAIGQYIPGKVTKIVPFGAFVRVADGIEGLVHISELSSKHV 332
>gi|298346799|ref|YP_003719486.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
gi|304389496|ref|ZP_07371459.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|298236860|gb|ADI67992.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 43063]
gi|304327306|gb|EFL94541.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length = 489
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V GTV D L+DI K+ + ++E I H + +A + G +
Sbjct: 33 KY-FND--GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVD--PDAEVKVGDE 87
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GL
Sbjct: 88 IEALVLQKEDKEGRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDI-GL 146
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +G+ L K +E+D+ ++ +VLS R + +Q++
Sbjct: 147 RGFLPASLVEMRRVRDLQPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLS 206
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+Q G + V
Sbjct: 207 TLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTV 262
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLQPYIGRQLETKIIELDKNR 182
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ LQ V KG V G ++ G+ G V S+
Sbjct: 183 NNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 241
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 242 LSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQIVPG 301
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+G F+ + GI GL+HVS+++ V V + GD + V
Sbjct: 302 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFV 348
>gi|315655345|ref|ZP_07908245.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
gi|315656742|ref|ZP_07909629.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315490285|gb|EFU79910.1| 30S ribosomal protein S1 [Mobiluncus curtisii ATCC 51333]
gi|315492697|gb|EFU82301.1| 30S ribosomal protein S1 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length = 489
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 17/236 (7%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLK 150
KY FN G V GTV D L+DI K+ + ++E I H + +A + G +
Sbjct: 33 KY-FND--GDLVSGTVVKVDRDEVLLDIGYKTEGVILSRELSIKHDVD--PDAEVKVGDE 87
Query: 151 EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
E +++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GL
Sbjct: 88 IEALVLQKEDKEGRLLLSKKRAQYERAWGDIEKVKQEDGVVTGTVIEVVKGGLIIDI-GL 146
Query: 211 RGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGF+P S + + + +G+ L K +E+D+ ++ +VLS R + +Q++
Sbjct: 147 RGFLPASLVEMRRVRDLQPYIGRQLETKIIELDKNRNNVVLSRRAFLEQTQSEVRTTFLS 206
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V+Q G + V
Sbjct: 207 TLQKGQVRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQVGQEVTV 262
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 128 VTGTVIEVVKGGLIIDIGLR--GFLP---ASLVEMRRVRDLQPYIGRQLETKIIELDKNR 182
Query: 163 DSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ LQ V KG V G ++ G+ G V S+
Sbjct: 183 NNVVLSRRAFLEQTQSEVRTTFLSTLQKGQVR-KGVVSSIVNFGAFVDLGGVDGLVHVSE 241
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 242 LSWKHIDHPSEVVQVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQTFARTHKIGQIVPG 301
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+G F+ + GI GL+HVS+++ V V + GD + V
Sbjct: 302 KVTKLVPFGVFVRVEDGIEGLVHVSELATRHVEVPEQVAKIGDEIFV 348
>gi|346311773|ref|ZP_08853773.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
12063]
gi|345899960|gb|EGX69793.1| hypothetical protein HMPREF9452_01642 [Collinsella tanakaei YIT
12063]
Length = 393
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 134/244 (54%), Gaps = 14/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +S ++ + + G V GTV ++ LVDI KS +P +E I K A
Sbjct: 18 EEMNSLIDGTITDFDEGDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRK--DANPA 75
Query: 144 GIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
IV G E +++ + + D LVLS + +YE AW R + + V+G+V+ KGG
Sbjct: 76 DIVSLGDPIEALVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNAGENVEGEVIEVVKGG 135
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ- 259
++ ++ GLRGF+P S + + + +G + + +E+D ++ +VLS R + +S+
Sbjct: 136 LILDI-GLRGFLPASLVDLRRVKDLTSYMGTSIEARVIEMDRNRNNVVLSRRVVLEESRK 194
Query: 260 -------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
++L G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 195 AERSEILSKLKSGMRLKGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQ 254
Query: 313 TLKV 316
++V
Sbjct: 255 EVEV 258
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 120/249 (48%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRIEEKFNAGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLT 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G E +I + +++VLS R++ E R+ + +++ +KG V
Sbjct: 161 SYMGTSIEARVIEMDRNRNNVVLSRRVV-----LEESRKAERSEILSKLKSGMRLKGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V GTV L P+GAF+D+G GI GL+H+S++++ V + V
Sbjct: 276 QTTEDPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPSQV 335
Query: 308 LQPGDTLKV 316
GDT++V
Sbjct: 336 THVGDTVQV 344
>gi|415885333|ref|ZP_11547261.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
gi|387591002|gb|EIJ83321.1| 30S ribosomal protein S1 [Bacillus methanolicus MGA3]
Length = 379
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 126/235 (53%), Gaps = 21/235 (8%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF- 153
N ++G KVKG V + + L + +K +P E HVE+A V + +E
Sbjct: 12 NFQVGDKVKGKVIKVEEKHVLASVENSKLDGIIPISELSS---LHVEKAEDVVTVGDELE 68
Query: 154 --VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
VI E EA L+LS R I E AW+ + + + +V KGG+V ++ G+R
Sbjct: 69 LEVIKVEEEA---LILSKRKIDAEKAWDDLEKKFESGEIFEAEVKDVVKGGLVVDL-GVR 124
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GFVP S + + + GK L K VE+D+E++RL+LS+R + + + +
Sbjct: 125 GFVPASLVEDHFVEDFSDYKGKPLTFKIVELDKEKNRLILSHRAVVEEEKIRQKQSLLES 184
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V+ GT+Q + +GAF+DIGG++GL+H+SQ+SH V + V++ G + V
Sbjct: 185 LQPGQVLEGTIQRITDFGAFVDIGGVDGLVHISQLSHQHVEKPSDVVEEGQKVNV 239
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 35/239 (14%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VD+ + ++P A + + VE+ G F
Sbjct: 105 FEAEVKDVVKG--------GLVVDLGVR--GFVP---ASLVEDHFVEDFSDYKGKPLTFK 151
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQS------EDVVVKGKVVGANKGGVVAEVE 208
I+ ++ + L+LS R + E E+ RQ QS V++G + G ++
Sbjct: 152 IVELDKEKNRLILSHRAVVEE---EKIRQKQSLLESLQPGQVLEGTIQRITDFGAFVDIG 208
Query: 209 GLRGFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL 262
G+ G V SQ+S + EE G+ + +K + VD + +R+ LS ++ + +
Sbjct: 209 GVDGLVHISQLSHQHVEKPSDVVEE--GQKVNVKVLSVDRDNNRISLSIKETLPGPWTNI 266
Query: 263 G----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSV+ GTV+ + YGAF+++ G+ GL+H+SQISH + VL+ G ++V
Sbjct: 267 SEKAPKGSVLEGTVKRIVSYGAFVEVFSGVEGLVHISQISHKHIGTPHEVLKEGQKVQV 325
>gi|255327556|ref|ZP_05368623.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
gi|255295450|gb|EET74800.1| SSU ribosomal protein S1P [Rothia mucilaginosa ATCC 25296]
Length = 484
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 128/233 (54%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEF 153
FN G V G V D+ L+DI K+ +P++E I H I E + G + E
Sbjct: 30 FND--GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVEL--GSEVEA 85
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ D VV G V+ KGG++ ++ GLRGF
Sbjct: 86 LVLTKEDKEGRLILSKKRAQYERAWGDIEKVKENDGVVTGAVIEVVKGGLILDI-GLRGF 144
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
+P S + + + +G+ L K +E+D+ ++ +VLS R + ++Q+ +L
Sbjct: 145 LPASLVEMRRVRDLAPYIGQQLEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 KGQVREGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 257
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 10/113 (8%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S K +G+ + ++ +EVD ++ R+ LS + D
Sbjct: 220 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQED 279
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
+G +V G V L P+GAF+ + GI GL+H+S+++ R D+A
Sbjct: 280 PWQAFARTHALGQIVPGKVTKLVPFGAFVRVEDGIEGLVHISELAT-RHVDLA 331
>gi|429758811|ref|ZP_19291324.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str.
F0379]
gi|429173025|gb|EKY14562.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 181 str.
F0379]
Length = 485
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 35 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQI 90
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 91 EALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 149
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 150 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 209
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 210 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 264
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 113/238 (47%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 130 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 184
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 185 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQV----RSGVVSSIVNFGAFVDL 232
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 233 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQTFA 292
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V++ GD + V
Sbjct: 293 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVELPEQVVKVGDEVFV 350
>gi|405983923|ref|ZP_11042228.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
gi|404388738|gb|EJZ83820.1| ribosomal protein S1 [Slackia piriformis YIT 12062]
Length = 396
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 132/232 (56%), Gaps = 14/232 (6%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFV 154
N + G VKGTV ++ L+DI KS +P++E I K + + IV G + E +
Sbjct: 30 NFDEGDLVKGTVVKLEHDEVLLDIGFKSEGVIPSRELSIRK--DADPSDIVALGDEIEAL 87
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++ + + D L+LS + +YE AW + + VV G+V+ KGG++ ++ GLRGF+
Sbjct: 88 VLQKEDKDGRLILSKKRAEYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDI-GLRGFL 146
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S + + + LG ++ + +E+D ++ +VLS R + + + ++L
Sbjct: 147 PASLVDLRRVKDLDMYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAK 206
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ GD ++V
Sbjct: 207 GMRLKGTVSSIVDFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGDEVEV 258
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 120/244 (49%), Gaps = 17/244 (6%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + + G V G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWIQVEEKFKAGEVVTGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLD 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYE-LAWERCRQLQ--SEDVVVKGKVVGANKG 201
+ G + E +I + +++VLS R++ E ER L ++ + +KG V
Sbjct: 161 MYLGTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLAKGMRLKGTVSSIVDF 220
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S +G ++ ++ ++VD ++ R+ L ++ D
Sbjct: 221 GAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLKQTTED 280
Query: 258 SQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
+L +GS+V G V + P+GAFI++G + GL+H+S+++ + A V++ G
Sbjct: 281 PWLKLVESYPVGSIVDGKVTKIVPFGAFIELGNNVEGLVHISEMAAKHIDTPAQVVKVGQ 340
Query: 313 TLKV 316
+KV
Sbjct: 341 EVKV 344
>gi|403383191|ref|ZP_10925248.1| 30S ribosomal protein S1 [Kurthia sp. JC30]
Length = 393
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 23/236 (9%)
Query: 100 GTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII-- 156
G VK V ++ +V I AK +P E HVE+A + +EF ++
Sbjct: 16 GDIVKARVEAVEDNRVIVSIPNAKYDGIIPISELSS---LHVEKASDAVSVGDEFDVMVK 72
Query: 157 ------GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
++E + VLS R + AW+ ++ + V++ +V KGG+V ++ G+
Sbjct: 73 KVEEPSTDSEGTGNYVLSKRQVDAVAAWKTLKEKFDDGEVIEAEVKDVVKGGLVVDL-GV 131
Query: 211 RGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
RGFVP S + T ++ GK L K VE+D+E++RL+LS+R + + +A+
Sbjct: 132 RGFVPASLVEDYFVETFDDYKGKSLKFKIVEMDQEKNRLILSHRAVLEEEKAEKKVEVIN 191
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ GTVQ + +GAF+DIGG++GL+H+SQ++H+ V+++ VL+ G +KV
Sbjct: 192 TIKEGDVLDGTVQRIAAFGAFVDIGGVDGLVHISQVAHEHVSNVYDVLKEGQQVKV 247
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 67/124 (54%), Gaps = 9/124 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V SQ++ + S ++L G+ + +K + VD R+ LS + +
Sbjct: 210 GAFVDIGGVDGLVHISQVAHEHVSNVYDVLKEGQQVKVKVLSVDPVNERISLSIKDTLPG 269
Query: 258 S----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
+ + G+V+ G V+ L +GAF+++ G+ GL+H+SQI+H + +LQ G
Sbjct: 270 PWEGIEEKAPKGAVLDGVVRRLVTFGAFVEVFPGVEGLVHISQIAHKHINTPHEMLQEGQ 329
Query: 313 TLKV 316
++V
Sbjct: 330 EVQV 333
>gi|423625417|ref|ZP_17601195.1| ribosomal protein S1 [Bacillus cereus VD148]
gi|401255097|gb|EJR61322.1| ribosomal protein S1 [Bacillus cereus VD148]
Length = 382
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/239 (35%), Positives = 133/239 (55%), Gaps = 34/239 (14%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKE--EFV 154
++G V G+V + + LV++ K+ +P E A +H +E+A V L + E
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELANVH----IEKASDVVELDQTLELK 71
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSE-------DVVVKGKVVGANKGGVVAEV 207
II E D LVLS R + E AW +LQ + DV VK V GG+V ++
Sbjct: 72 IIKLEE--DDLVLSKRAVDAEKAW---VELQGKFTSGHVFDVTVKDIV----NGGLVVDL 122
Query: 208 EGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQL 262
G+RGF+P S + + + GK L +K VE+D E++R++LS++ + DS+ +
Sbjct: 123 -GVRGFIPASLVEVHYVEDFSDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKE 181
Query: 263 GI-----GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
I G +V GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 182 AISSLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 60/217 (27%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFSDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E +V+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDIVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVAGEIKAGDIREGVVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|251796396|ref|YP_003011127.1| RNA binding S1 domain-containing protein [Paenibacillus sp. JDR-2]
gi|247544022|gb|ACT01041.1| RNA binding S1 domain protein [Paenibacillus sp. JDR-2]
Length = 411
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ D+ A V + K +P +E ++ + +A V G + E ++ +
Sbjct: 22 GDTVKGTIIKIDDNQAYVSLGYKYDGVIPVRELSAVQLDNANDAVQV-GQEVELKVVSID 80
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R+I E AW+ + V + V KGG+VA+V G+RGF+P S +
Sbjct: 81 DEKEKLVLSKRLIDGERAWDGLQSRFESGEVFEVAVADVVKGGLVADV-GVRGFIPASMV 139
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVV 268
+ + G+ L +K E+D E ++++LS + + D++ A L +G+ +
Sbjct: 140 ERHFVEDFSDYKGRTLRVKVKEIDRENNKVILSAKDVL-DAEFEQNKQHVIAGLQVGAQL 198
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L P+GAF+DIGGI+GL+HVS++S VA V+ G + V
Sbjct: 199 EGTVQRLTPFGAFVDIGGIDGLVHVSELSWQHVAHPKDVVSEGQQVTV 246
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 68/119 (57%), Gaps = 9/119 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTA--EELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA- 256
G ++ G+ G V S++S + A ++++ G+ + +K ++VD ++ LS + A
Sbjct: 209 GAFVDIGGIDGLVHVSELSWQHVAHPKDVVSEGQQVTVKVLKVDPAAGKISLSIKAAQPG 268
Query: 257 ---DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
+ Q +G +V GTV+ L +GAF++I G+ GL+H+SQI+H +A VL+ G
Sbjct: 269 PWESAAGQFNVGDIVTGTVRRLVTFGAFVEIAPGVEGLVHISQIAHRHIATPFEVLKEG 327
>gi|154508851|ref|ZP_02044493.1| hypothetical protein ACTODO_01361 [Actinomyces odontolyticus ATCC
17982]
gi|293192694|ref|ZP_06609648.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
gi|399526549|ref|ZP_10766316.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
gi|153798485|gb|EDN80905.1| 30S ribosomal protein S1 [Actinomyces odontolyticus ATCC 17982]
gi|292820201|gb|EFF79198.1| ribosomal protein S1 [Actinomyces odontolyticus F0309]
gi|398362900|gb|EJN46562.1| 30S ribosomal protein S1 [Actinomyces sp. ICM39]
Length = 478
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/235 (30%), Positives = 133/235 (56%), Gaps = 15/235 (6%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D+ L+DI K+ + ++E I + ++ + G +
Sbjct: 28 KY-FND--GDIVEGTVVKVDHDEVLLDIGYKTEGVILSRELSIKHDVNPDDV-VAVGDQI 83
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E +++ + + + L+LS + QYE AW + +++ ED VV G V+ KGG++ ++ GLR
Sbjct: 84 EALVLQKEDKEGRLLLSKKRAQYERAWGQIEKVKEEDGVVTGTVIEVVKGGLILDI-GLR 142
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 143 GFLPASLVEMRRVRDLAPYIGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLHT 202
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 203 LQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 257
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 41/223 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGREIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 178 NNVVLSRR------AW--LEQTQSEVRTNFLHTLQKGQV----RSGVVSSIVNFGAFVDL 225
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQEDPWQAFA 285
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 286 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 328
>gi|23099255|ref|NP_692721.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
gi|22777484|dbj|BAC13756.1| 30S ribosomal protein S1 [Oceanobacillus iheyensis HTE831]
Length = 376
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 113/216 (52%), Gaps = 14/216 (6%)
Query: 111 DNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR 170
+++ LVDI K+ LP E HVE V + + + DD ++LS R
Sbjct: 25 EDKQVLVDIGYKTEGILPIGELSS---LHVEATTDVLTEGDTVTLKVKKIDDDEIILSKR 81
Query: 171 MIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--EL 228
I E AWE Q + V KGG+V +V G+RGF+P S + + + +
Sbjct: 82 AIDSETAWEELEQKYNSGEAFDTTVKEVVKGGLVVDV-GVRGFIPASLVETYYVEDFSDY 140
Query: 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGA 280
L K L +K ++D Q+R++LS+R + D + L G V+ GTVQ + +GA
Sbjct: 141 LNKTLKVKIADLDRSQNRVILSHRAIVEDEEKNRKNDVLQSLEPGQVIEGTVQRITNFGA 200
Query: 281 FIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+D+GG++GL+H+SQ++H+ V + V+ GD +KV
Sbjct: 201 FVDLGGVDGLVHISQLAHEHVEKTSDVVSEGDKIKV 236
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
V++G V G ++ G+ G V SQ++ K++ G + ++ + VD +
Sbjct: 187 VIEGTVQRITNFGAFVDLGGVDGLVHISQLAHEHVEKTSDVVSEGDKIKVEVLSVDLDNE 246
Query: 246 RLVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS++ + A+ + Q+ +GS + GTV+ L +GAF+++ G+ GL+H+SQI++
Sbjct: 247 RISLSHKNTLPGPWANVEEQVKVGSTIEGTVKRLVSFGAFVELLPGVEGLVHISQIANRH 306
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G T++V
Sbjct: 307 IGTPQEVLEIGQTVQV 322
>gi|154497962|ref|ZP_02036340.1| hypothetical protein BACCAP_01942 [Bacteroides capillosus ATCC
29799]
gi|150272952|gb|EDN00109.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Pseudoflavonifractor capillosus ATCC 29799]
Length = 649
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 132/264 (50%), Gaps = 15/264 (5%)
Query: 63 LFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAK 122
+ +E Y + ME E F LEK G KV G V VD+ K
Sbjct: 271 IIKEVYNKMSDEIME----IEESFAELLEKSIKTLNTGEKVTGVVTGITPTEIYVDLGTK 326
Query: 123 SSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182
+ Y+P E VE+ V G + E ++ N+ + + LS + + +W+
Sbjct: 327 HAGYIPVSELTDDPTVKVEDLVHV-GDEIETYVMRVNDQEGVVTLSKKRLDTVKSWDDIE 385
Query: 183 QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEV 240
Q + + V+G V NKGG+V ++G+R FVP SQ + ++ ELL K + L+ EV
Sbjct: 386 QAREDHTTVEGVVTEENKGGIVVSIKGVRVFVPASQTGLPRETPMSELLKKHVRLRITEV 445
Query: 241 DEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLH 292
+ + R+V S R A+ +A + G GTV+SL YGAF+DIGG++G++H
Sbjct: 446 NRARRRVVGSIRAVTAEERAAKAAEVWENIEEGKKYTGTVKSLTSYGAFVDIGGVDGMVH 505
Query: 293 VSQISHDRVADIATVLQPGDTLKV 316
+S++S R+ + V++ GDT++V
Sbjct: 506 ISELSWSRIKHPSEVVKVGDTVEV 529
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S++S K +E + +G + + + D+E+ ++
Sbjct: 483 GTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVKVGDTVEVYVISFDKEKKKIS 542
Query: 249 LSNRKAMADSQA----QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVAD 303
L + D + +G V L +GAF +I G++GL+H+SQI+ R+
Sbjct: 543 LGMKDRSQDPWTVFTTKYSVGDTANVKVVKLMTFGAFAEIVPGVDGLIHISQIADHRIEK 602
Query: 304 IATVLQPGDTLKV 316
VL G + V
Sbjct: 603 PGDVLSEGQMVDV 615
>gi|254509538|ref|ZP_05121605.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
gi|221533249|gb|EEE36237.1| ribosomal protein S1 [Rhodobacteraceae bacterium KLH11]
Length = 553
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 128/246 (52%), Gaps = 16/246 (6%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 1 MEEFEALLNESFEMDTPEEGSVVKGKVLAIEAGQAIIDVGYKMEGRVDLKEFA----NPG 56
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E I PG + E + A V+S M + E AW+R + ++D V+G + G K
Sbjct: 57 EAPEIAPGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRVK 116
Query: 201 GGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +S
Sbjct: 117 GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEES 176
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 177 RAEQRAEVIGNLSEGQTVEGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTI 236
Query: 311 GDTLKV 316
G+T+KV
Sbjct: 237 GETIKV 242
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 91 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 143
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ SE V+G V +
Sbjct: 144 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQTVEGVVKNITE 203
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 204 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQE 263
Query: 257 DSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D A+ +GSV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 264 DPWDLVAAKYPLGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMS 309
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
LG+ +G V + GA V++ A + E K K+V IV +E V++ E
Sbjct: 275 LGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVMVLE 333
Query: 159 -NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ A + L L+ Q WE + E V+G+V + G+ ++G + G V
Sbjct: 334 IDGAKRRVSLGLKQTQRN-PWEVFAETHPEGTEVEGEVKNITEFGLFIGLDGDIDGMVHL 392
Query: 217 SQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSV 267
S +S E+ + G + EVD E+ R+ LS + D ++A G+ GS+
Sbjct: 393 SDLSWDERGEDAIQNYRKGDVVQAVVSEVDVEKERISLSIKALGGDKFAEAVGGVKRGSI 452
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V V +++ G ++ G+ + S +S DR GD + V
Sbjct: 453 VTVNVTAIEDGGIEVEYEGMKSFIRRSDLSRDRAEQRPERFSVGDKVDV 501
>gi|253581079|ref|ZP_04858339.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847615|gb|EES75585.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 302
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 137/254 (53%), Gaps = 36/254 (14%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
+++++ + LE E G + GTV D + +VD+ + +P ++ +
Sbjct: 4 SMKDYETELEASFKKIEEGDILTGTVISVDEKEVVVDLKYYAEGIIPAED-------YSR 56
Query: 142 EAGIVPGLKEEF--------VIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DV 189
E G LKE+ ++ +++ + +++LS LAW++ ++L+ DV
Sbjct: 57 EPGF--SLKEQVNVGDEVSATVVRKDDGNGNILLSRTEAADVLAWDKLKELKDSKEVIDV 114
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRL 247
VVKG V GGV+A VEG+RGF+P S+++ + E L K + ++ ++D+E+ RL
Sbjct: 115 VVKGIV----NGGVIAYVEGVRGFIPASKLALNYVEDTNEYLNKPIQVQVFDIDKEKGRL 170
Query: 248 VLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH 298
+LS ++ + + + + +G V G V+SL+PYGAF+D+G G++GL+H+SQI
Sbjct: 171 ILSAKEILREKAEEERKTKISNVQVGLVTEGVVESLQPYGAFVDLGNGLSGLVHISQICE 230
Query: 299 DRVADIATVLQPGD 312
R+ + VL GD
Sbjct: 231 KRIKKPSEVLTVGD 244
>gi|222153157|ref|YP_002562334.1| 30S ribosomal protein S1 [Streptococcus uberis 0140J]
gi|222113970|emb|CAR42251.1| putative 30S ribosomal protein S1 [Streptococcus uberis 0140J]
Length = 405
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 103/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLIGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ A +L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVIEETTAAARQEVFSKLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV GTV L +GAFID+GG++GL+HV+++SH+R +V+ GD ++V
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEVEV 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYEL---AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A + SE VV G V G ++ G+ G V
Sbjct: 162 DAAENRFILSRREVIEETTAAARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGVDGLVH 221
Query: 216 FSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + +G ++ +K + +DEE R+ LS + + +L G V
Sbjct: 222 VTELSHERNVSPKSVVSVGDEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAQGDV 281
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 282 VEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTV 331
>gi|261406030|ref|YP_003242271.1| RNA-binding S1 domain-containing protein [Paenibacillus sp.
Y412MC10]
gi|261282493|gb|ACX64464.1| RNA binding S1 domain protein [Paenibacillus sp. Y412MC10]
Length = 405
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 125/227 (55%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V I K +P +E ++ + +A + G + E ++ N
Sbjct: 26 GDTVKGTIVKLEDNQAYVSIGYKYDGVIPVRELSSVQLDNASDA-VQVGQEVECKVVSIN 84
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ +SLVLS R I E +W+ + ++ V + V KGG+VA+V G RGF+P S +
Sbjct: 85 DDKESLVLSKRAIDTENSWDELEKHFADQDVFEVTVADVVKGGLVADV-GARGFIPASMV 143
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVVI 269
+ + G+ L +K E+D E ++++LS + + A+ Q ++L G V+
Sbjct: 144 ERHFVEDFSDYKGRTLRVKVKELDRENNKVILSQKDVLEEEFEANKQKVMSELQDGQVLE 203
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + VL GD ++V
Sbjct: 204 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRV 250
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQI--SSKSTAEELL--GKDLPLKFVEVDEEQS 245
V++G V + G +V G+ G V S+I S ++L G + +K ++VD E+
Sbjct: 201 VLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWSHVDKPSDVLSEGDQVRVKVLKVDPEKG 260
Query: 246 RLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + A + Q G +V G V+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 261 KISLSIKAAAPGPWETAGEQFNTGDIVTGVVKRLVTFGAFVELAPGVEGLVHISQISHKH 320
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G ++V
Sbjct: 321 IGTPQEVLKEGQEVQV 336
>gi|257869555|ref|ZP_05649208.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
gi|357050749|ref|ZP_09111946.1| hypothetical protein HMPREF9478_01929 [Enterococcus saccharolyticus
30_1]
gi|257803719|gb|EEV32541.1| ribosomal protein S1 [Enterococcus gallinarum EG2]
gi|355380901|gb|EHG28033.1| hypothetical protein HMPREF9478_01929 [Enterococcus saccharolyticus
30_1]
Length = 402
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 131/247 (53%), Gaps = 17/247 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEE 142
E +AL+ + +G VKG V +++ A+V I A +P +E ++ + E
Sbjct: 14 ESMEAALDNFQ-EVNVGDIVKGEVLAIEDKQAIVGIEGAGVEGVVPAKELSTLPVEDINE 72
Query: 143 AGIVPGLKEEFVI--IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
V + E VI IG+++ + S +LS R + + WE + +++ V K
Sbjct: 73 VVKVGDVLELVVISAIGKDKENGSYLLSKRRLDAKKVWEDIEKDFQAGKIIEAPVTNVVK 132
Query: 201 GGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG+V +V G+RGFVP S + A E+ GK L K VE++ ++RL+LS+ KA+ ++
Sbjct: 133 GGLVVDV-GVRGFVPASMVEDHFVADFEDYKGKTLTFKIVEIEPSENRLILSH-KAVVEA 190
Query: 259 Q---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+ A L G + G V L +GAF+D+GGI+GL+HVS+ISH V + VL
Sbjct: 191 EKEKQKEALLADLYEGQEIEGKVARLTDFGAFVDLGGIDGLVHVSEISHAHVGKPSDVLS 250
Query: 310 PGDTLKV 316
GDT+ V
Sbjct: 251 VGDTVNV 257
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSR 246
++GKV G ++ G+ G V S+IS K + +G + ++ + VD + R
Sbjct: 209 IEGKVARLTDFGAFVDLGGIDGLVHVSEISHAHVGKPSDVLSVGDTVNVRVLSVDPNKER 268
Query: 247 LVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
+ LS + + ++ + Q +GSV+ G V+ L +GAF+++ G+ GL+H+SQISH +
Sbjct: 269 VSLSIKDTLPGPWSNIEEQAPVGSVLDGVVKRLTSFGAFVEVFPGVEGLIHISQISHKHI 328
Query: 302 ADIATVLQPGDTLKV 316
A VL GD ++V
Sbjct: 329 ATPHEVLHEGDQVQV 343
>gi|222151374|ref|YP_002560530.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
gi|222120499|dbj|BAH17834.1| 30S ribosomal protein S1 [Macrococcus caseolyticus JCSC5402]
Length = 387
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 134/245 (54%), Gaps = 16/245 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEE 142
EEF+ A+ K + G KVKGTV + + ++++ AK +P + I++ EE
Sbjct: 3 EEFNEAMIK---EIQEGDKVKGTVQAIEEKHVVLNLDGAKYDGIIPISQLSSLHIENAEE 59
Query: 143 AGIVPGLKEEFVI-IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+ E FV I + E D +LS R + ++E ++ ++ +V A KG
Sbjct: 60 VVQIGDEIEAFVTKIEDKEEDGHYILSKRQLDESESFESLKEKFENGETLEAEVKEAVKG 119
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G+V +V GLRGF+P S IS+ + +G+ L LK E+D+E++R++L+++ A+
Sbjct: 120 GLVVDV-GLRGFIPASLISTNYIEDFSSYVGQVLTLKIEELDQEKNRVILNHKVIEAEEN 178
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
++ +GSV+ G V + +GAF+DIG ++GL+H+SQI+HD + + L G
Sbjct: 179 KVKKEQRLDEIEVGSVIEGEVLRITNFGAFVDIGEVDGLVHISQITHDHIDKVEDALSIG 238
Query: 312 DTLKV 316
D +KV
Sbjct: 239 DKVKV 243
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 71/251 (28%), Positives = 125/251 (49%), Gaps = 29/251 (11%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE- 142
E F S EK++ L +VK V G +VD+ + ++P A + ++E+
Sbjct: 94 ESFESLKEKFENGETLEAEVKEAV----KGGLVVDVGLR--GFIP---ASLISTNYIEDF 144
Query: 143 ---AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVV 196
G V LK E + ++ + ++L+ ++I+ E + Q E V++G+V+
Sbjct: 145 SSYVGQVLTLKIEEL----DQEKNRVILNHKVIEAEENKVKKEQRLDEIEVGSVIEGEVL 200
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNR 252
G ++ + G V SQI+ E+ L G + +K + VD+E R+ LS +
Sbjct: 201 RITNFGAFVDIGEVDGLVHISQITHDHIDKVEDALSIGDKVKVKVLSVDKEAERVSLSMK 260
Query: 253 KAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
A+ + + IG +V G V L +GAF++I G+ GL+H+SQISHD + + + V
Sbjct: 261 AALPGPFETIEEKFSIGDIVDGEVVRLANFGAFVEIDKGLQGLVHISQISHDHIGNPSEV 320
Query: 308 LQPGDTLKVCL 318
L+PG +KV +
Sbjct: 321 LEPGQKVKVKI 331
>gi|196039027|ref|ZP_03106334.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
gi|196030172|gb|EDX68772.1| ribosomal protein S1 [Bacillus cereus NVH0597-99]
Length = 382
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E +
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQTLELKV 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWVELQEKFNSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + G+ L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGETLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 19/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FNS G TV N G +VD+ + ++P A + ++ +VE+ G
Sbjct: 100 FNS--GHVFDVTVKDIVNGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGETLAVK 152
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLR 211
I+ + + ++LS + +++ EL ++ + S E VV+G V G V G+
Sbjct: 153 IVELDREKNRVILSHKAVVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVD 212
Query: 212 GFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG---- 263
G V SQIS + + E+L G+ + +K + VD + R+ LS + A +G
Sbjct: 213 GLVHISQISHERVEQPSEVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENVGGEVK 272
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V+ L +GAF++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 273 AGDIREGVVKRLVTFGAFVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>gi|302388400|ref|YP_003824222.1| RNA binding S1 domain-containing protein [Clostridium
saccharolyticum WM1]
gi|302199028|gb|ADL06599.1| RNA binding S1 domain protein [Clostridium saccharolyticum WM1]
Length = 310
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 106/183 (57%), Gaps = 11/183 (6%)
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
I PG + ++ ++ + ++VLS ++ LAWE+ + S+ + + K+ KGG V
Sbjct: 79 IQPGDEITATVVSADDGEGNIVLSRKLANDRLAWEKLGSMLSDRTIARVKIEEIVKGGAV 138
Query: 205 AEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ- 261
A +EG+RGF+P S+++ + +E GK + + + DEE +LVLS R+ Q +
Sbjct: 139 AYLEGIRGFIPASKLAGEYVEDLDEYNGKVIEVTVITADEENKKLVLSGREPALMKQKEE 198
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDT 313
+G+V+ GTV SLK YGAFI++ G++GLLH+SQIS R+ VL+ G T
Sbjct: 199 TSKKIEKCQVGTVMEGTVDSLKDYGAFINLENGLSGLLHISQISSQRIKHPGVVLKEGQT 258
Query: 314 LKV 316
+KV
Sbjct: 259 VKV 261
>gi|357010264|ref|ZP_09075263.1| RNA binding S1 domain-containing protein [Paenibacillus elgii B69]
Length = 405
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 124/227 (54%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V D A+VD+ K + +E ++ + EE + G + E ++ +
Sbjct: 31 GDIVTGKVIKVDADQAVVDVGYKYDGIVSVRELSSVQLDNAEEI-VQVGQEIELKVLTID 89
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R I E +WE+ +++ KV KGG+V +V GLRGFVP S +
Sbjct: 90 DNKEKLVLSKRAIDSEKSWEKLAADMENKTILEAKVAEVVKGGLVVDV-GLRGFVPASMV 148
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVVI 269
+ + G+ L L+ E+D E+++++LS + + ++ ++L +G ++
Sbjct: 149 ERTFVEDFSDYKGRTLRLRVKEMDREKNKVILSQKDVLDEELETKKQETISKLSVGQELM 208
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+DIGG++GL+H+S+++ V + V++ GD ++V
Sbjct: 209 GTVQRLTQFGAFVDIGGVDGLVHISEMAWHHVEHASEVVKEGDQVRV 255
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 68/124 (54%), Gaps = 9/124 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S+++ A E++ G + ++ +++D R+ LS +
Sbjct: 218 GAFVDIGGVDGLVHISEMAWHHVEHASEVVKEGDQVRVQVLKLDPANERISLSIKATQPG 277
Query: 258 S----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
+ ++ IG +V GTV+ L +GAFI++ G+ GL+H+SQI+H +A VL+ G
Sbjct: 278 PWESVKNKINIGDIVTGTVKRLVQFGAFIEVAPGVEGLVHISQIAHRHIATPFEVLKEGQ 337
Query: 313 TLKV 316
++V
Sbjct: 338 EVQV 341
>gi|159897034|ref|YP_001543281.1| RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159890073|gb|ABX03153.1| RNA binding S1 domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 415
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 139/263 (52%), Gaps = 28/263 (10%)
Query: 81 FTLEEFHSALEKY------DF-NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
++ ++ + LE+Y D+ N + G V GT+ D LVDI +KS +P +E
Sbjct: 28 YSGDDDRALLEEYLRDPAHDYRNLKYGDSVDGTIVRVDRDEVLVDIGSKSEGVVPGREMT 87
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE-DVVVK 192
+ E A + G ++ +A+ +VLS+ + E +W R Q+ E V+
Sbjct: 88 --SLSSEERAELKVGDVLLVTVVQTEDAEGRIVLSIDKARQEKSW-RALQVNHEAGDVIH 144
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFS---------QISSKSTAEELLGKDLPLKFVEVDEE 243
V NKGG++ + G+RGFVP S + +S +L+G+ LPLK +E++
Sbjct: 145 AAVTNYNKGGLLVNLSGVRGFVPSSQVSSVSRGSDVQKQSDMAKLVGQTLPLKIIEINRS 204
Query: 244 QSRLVLSNRKAMA---DSQA-----QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQ 295
++RL+LS R+A+ DS+ +L G+V G V SL +GAF+DIGG +GL+H+S+
Sbjct: 205 RNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIGGADGLVHLSE 264
Query: 296 ISHDRVADIATVLQPGDTLKVCL 318
+S RV VL+ GD + V +
Sbjct: 265 LSWSRVKHPEEVLKVGDAVSVYI 287
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 84/172 (48%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLR 211
II N + + L+LS R E+ R QL + V G+V G ++ G
Sbjct: 198 IIEINRSRNRLILSERQAVQEVRDSRKDQLLEKLEPGAVRTGRVTSLCDFGAFVDIGGAD 257
Query: 212 GFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQA----QLG 263
G V S++S EE+L G + + + VDE++ R+ LS ++ A+ +
Sbjct: 258 GLVHLSELSWSRVKHPEEVLKVGDAVSVYILSVDEDKKRIALSIKRTQAEPWTTVTDRYQ 317
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTL 314
IG V G V L +GAF+ + GI GL+H+S++S +R+ V+ GD++
Sbjct: 318 IGQSVSGVVTQLTAFGAFVRLEDGIEGLIHISEMSDERIQHPRDVINEGDSV 369
>gi|375309056|ref|ZP_09774337.1| RNA binding s1 domain protein [Paenibacillus sp. Aloe-11]
gi|375078365|gb|EHS56592.1| RNA binding s1 domain protein [Paenibacillus sp. Aloe-11]
Length = 408
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 124/227 (54%), Gaps = 13/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A+V I K +P +E + + EEA + G + E II +
Sbjct: 28 GDTVKGTIVKLEDNQAVVSIGYKYDGVIPIRELS-SGLDNAEEA-VQVGQEVEARIISID 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+A + LVLS R I E AWE+ QL V + V KGG+V +V G+RGF+P S +
Sbjct: 86 DAKEKLVLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GVRGFIPASMV 144
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVVI 269
+ + G+ L + E+D E ++++LS + + A+ Q A+L G ++
Sbjct: 145 ERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKDVLEAEFEANKQKVMAELKEGQEIV 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + + GD +KV
Sbjct: 205 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKV 251
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 202 GVVAEVEGLRGFVPFSQIS-------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V S+I+ S + +E G + +K ++VD E+ ++ LS + A
Sbjct: 214 GAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSE---GDQVKVKVLKVDPEKGKISLSMKAA 270
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+ Q +V G V+ L +GAF++I G+ GL+H+SQISH + VL+
Sbjct: 271 QPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLE 330
Query: 310 PGDTLKVCL 318
G +KV +
Sbjct: 331 EGQEVKVKI 339
>gi|260903786|ref|ZP_05912108.1| 30S ribosomal protein S1 [Brevibacterium linens BL2]
Length = 495
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 137/250 (54%), Gaps = 22/250 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
T E+F +A++ KY FN G V+GTV D LVDI K+ + ++E I K
Sbjct: 21 TAEDFLAAVDETIKY-FND--GDIVEGTVVKVDRDEVLVDIGYKTEGVVLSRELSI---K 74
Query: 139 HVEEAGIVPGLKEEF--VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVV 196
H + G V + +E +++ + + + L+LS + QYE AW +++ ++ VV G V+
Sbjct: 75 HDVDPGEVVEVGDEIEALVLQKEDKEGRLMLSKKRAQYERAWGDIEKIKEDNGVVTGTVI 134
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R
Sbjct: 135 EVVKGGLIVDI-GLRGFLPASLVEMRRVRDLAPYIGQQVEAKIIELDKNRNNVVLSRRAW 193
Query: 255 MADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIAT 306
+ +Q+ L G V G V S+ +GAF+D+GG++GL+HVS++S +
Sbjct: 194 LEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPGE 253
Query: 307 VLQPGDTLKV 316
V+ GD + V
Sbjct: 254 VVTVGDEVTV 263
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 29/213 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 129 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQVEAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAW-ERCRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGF 213
+++VLS R AW E+ + D V G V G ++ G+ G
Sbjct: 184 NNVVLSRR------AWLEQTQSAVRHDFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGL 237
Query: 214 VPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G ++ ++ ++VD ++ R+ LS + D IG
Sbjct: 238 VHVSELSWKHIDHPGEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHVIG 297
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+V G V L P+GAF+ + GI GL+H+S+++
Sbjct: 298 QIVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 330
>gi|424736593|ref|ZP_18165052.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZB2]
gi|422949589|gb|EKU43963.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZB2]
Length = 378
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 17/233 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
FN G VKG D + V I A +P E H+E+A V + +E
Sbjct: 12 FNE--GDIVKGIAAQVDEKAVSVSIPGAPFDGIVPISELSS---LHIEKASDVISVGDEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ +++ VLS R + AW+ Q + + + + +V KGG+V ++ G+RGF
Sbjct: 67 ELMITKVEEENFVLSKRKVDALKAWDTLEQQFAAEEIFEAEVKDIVKGGLVVDL-GVRGF 125
Query: 214 VPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S + E G+ L K VE+D+ ++RL+LS+R + +A Q+
Sbjct: 126 VPASLVEDYFVDDFEGYKGQTLSFKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIK 185
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAFID+GGI+GL+H+SQ+SH+ V+D++ VL G +KV
Sbjct: 186 AGDVLDGKVQRLASFGAFIDLGGIDGLVHISQVSHEHVSDVSEVLAEGQDVKV 238
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 153 FVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVVAEVE 208
F I+ ++ + L+LS R +++ E A ++ Q+++ DV+ GKV G ++
Sbjct: 149 FKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVL-DGKVQRLASFGAFIDLG 207
Query: 209 GLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQA 260
G+ G V SQ+S + S E+L G+D+ +K + VD E R+ LS ++ + ++ +
Sbjct: 208 GIDGLVHISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLSIKETIPGPWSNIEE 267
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+++ G V+ L +GAF+++ G+ GL+H+SQI+H + L+ G ++V
Sbjct: 268 RAAKGTILDGRVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQV 324
>gi|295395316|ref|ZP_06805520.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
gi|294971867|gb|EFG47738.1| 30S ribosomal protein S1 [Brevibacterium mcbrellneri ATCC 49030]
Length = 488
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 137/248 (55%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
+EF +A++ KY FN G V+GT+ D LVDI K+ + ++E I KH
Sbjct: 23 DEFLAAVDETIKY-FND--GDIVEGTIVKVDRDEVLVDIGYKTEGVILSRELSI---KHD 76
Query: 140 VEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V G E +++ + + D L+LS + QYE AW +++ + VV G V+
Sbjct: 77 VDPAEVVEVGDPIEALVLTKEDKDGRLMLSKKRAQYERAWGDIEKVKENEGVVTGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLIVDI-GLRGFLPASLVEMRRVRDLTPYIGQKVDAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
++Q+ L G V G V S+ +GAF+D+GG++GL+HVS++S + V+
Sbjct: 196 ETQSTVRHDFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPNEVV 255
Query: 309 QPGDTLKV 316
GD + V
Sbjct: 256 TVGDEVTV 263
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 29/213 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G K + II ++
Sbjct: 129 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLTPYIGQKVDAKIIELDKNR 183
Query: 163 DSLVLSLRMIQYELAW-ERCRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGF 213
+++VLS R AW E + D V G V G ++ G+ G
Sbjct: 184 NNVVLSRR------AWLEETQSTVRHDFLQTLQKGQVRPGVVSSIVNFGAFVDLGGVDGL 237
Query: 214 VPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V S++S K +G ++ ++ ++VD ++ R+ LS + D IG
Sbjct: 238 VHVSELSWKHIDHPNEVVTVGDEVTVEVLDVDMDRERVSLSLKATQEDPWQHFARTHVIG 297
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+V G V L P+GAF+ + GI GL+H+S+++
Sbjct: 298 QIVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 330
>gi|28493260|ref|NP_787421.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
gi|28476301|gb|AAO44390.1| 30S ribosomal protein S1 [Tropheryma whipplei str. Twist]
Length = 473
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 24/233 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP------GLKEEF 153
G V GTV LVD+ K+ +P +E + A + P G E
Sbjct: 29 GDIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLR-------ADVDPNELLEVGSTVEA 81
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ + ++ L+LS + QYE AW +++ D+ V GKV+ +GG++ ++ GLRGF
Sbjct: 82 LVFQKEDSQGRLILSKKRAQYEKAWSDLEKIKDSDLTVTGKVIEIVRGGLIVDI-GLRGF 140
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S I + + LG ++ K +E+D +++ +VLS R + +Q++ L
Sbjct: 141 LPASLIDIRRVRDLSSYLGMEIEAKVLELDRQRNNVVLSRRVLLEQNQSEARTSLFGNLH 200
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V GTV S+ +GAF+D+GGI+GL+H+S+IS V + VL+ G+ + V
Sbjct: 201 KGQVRKGTVSSIVSFGAFVDLGGIDGLVHISEISWKHVTQPSEVLKVGEEVTV 253
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 36/255 (14%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E+ S LEK +S+L V G V G +VDI + +LP A + I+ V +
Sbjct: 103 EKAWSDLEKIK-DSDL--TVTGKVIEIVRGGLIVDIGLR--GFLP---ASLIDIRRVRDL 154
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE-----------DVVVK 192
G++ E ++ + +++VLS R++ Q QSE V K
Sbjct: 155 SSYLGMEIEAKVLELDRQRNNVVLSRRVL--------LEQNQSEARTSLFGNLHKGQVRK 206
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S+IS K + E+L G+++ ++ +EVD E+ R+
Sbjct: 207 GTVSSIVSFGAFVDLGGIDGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSERHRVS 266
Query: 249 LSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVAD 303
LS R D IG ++ G V + +G F+ + + GL HVS++ +
Sbjct: 267 LSLRATQEDPWQVFAHDHAIGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLES 326
Query: 304 IATVLQPGDTLKVCL 318
V PGD + V +
Sbjct: 327 TEDVFSPGDEVFVKI 341
>gi|153854638|ref|ZP_01995888.1| hypothetical protein DORLON_01883 [Dorea longicatena DSM 13814]
gi|149752742|gb|EDM62673.1| S1 RNA binding domain protein [Dorea longicatena DSM 13814]
Length = 269
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/151 (43%), Positives = 95/151 (62%), Gaps = 13/151 (8%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL---LGKDLP 234
W + + V+ KV G GG +A VEGLRGF+P S++S S E+L L KD+
Sbjct: 69 WNVVKSYMEKGTVLPVKVEGIVNGGAIAMVEGLRGFIPASRLSL-SYIEDLETYLLKDIE 127
Query: 235 LKFVEVDEEQSRLVLSNR-----KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDIG- 285
+K ++VDE +RLVLS R KA + +A++ +GS+V GTV+SL+ YGAF+D+G
Sbjct: 128 VKVIDVDEANNRLVLSAREILQEKARKEREAKIAAVKVGSIVTGTVESLQNYGAFVDLGD 187
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GL+H+SQIS R+ A VL GD + V
Sbjct: 188 GLSGLVHISQISLKRIKSPADVLNVGDEVTV 218
>gi|28572628|ref|NP_789408.1| 30S ribosomal protein S1 [Tropheryma whipplei TW08/27]
gi|28410760|emb|CAD67146.1| 30s ribosomal protein S1 [Tropheryma whipplei TW08/27]
Length = 473
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 123/233 (52%), Gaps = 24/233 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP------GLKEEF 153
G V GTV LVD+ K+ +P +E + A + P G E
Sbjct: 29 GDIVVGTVVRVYRDEVLVDVGYKTEGVIPVKELSLR-------ADVDPNELLEVGSTVEA 81
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ + ++ L+LS + QYE AW +++ D+ V GKV+ +GG++ ++ GLRGF
Sbjct: 82 LVFQKEDSQGRLILSKKRAQYEKAWSDLEKIKDSDLTVTGKVIEIVRGGLIVDI-GLRGF 140
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LG 263
+P S I + + LG ++ K +E+D +++ +VLS R + +Q++ L
Sbjct: 141 LPASLIDIRRVRDLSSYLGMEIEAKVLELDRQRNNVVLSRRVLLEQNQSEARTSLFGNLH 200
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V GTV S+ +GAF+D+GGI+GL+H+S+IS V + VL+ G+ + V
Sbjct: 201 KGQVRKGTVSSIVSFGAFVDLGGIDGLVHISEISWKHVTQPSEVLKVGEEVTV 253
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 36/255 (14%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E+ S LEK +S+L V G V G +VDI + +LP A + I+ V +
Sbjct: 103 EKAWSDLEKIK-DSDL--TVTGKVIEIVRGGLIVDIGLR--GFLP---ASLIDIRRVRDL 154
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE-----------DVVVK 192
G++ E ++ + +++VLS R++ Q QSE V K
Sbjct: 155 SSYLGMEIEAKVLELDRQRNNVVLSRRVL--------LEQNQSEARTSLFGNLHKGQVRK 206
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S+IS K + E+L G+++ ++ +EVD E+ R+
Sbjct: 207 GTVSSIVSFGAFVDLGGIDGLVHISEISWKHVTQPSEVLKVGEEVTVEILEVDSERHRVS 266
Query: 249 LSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVAD 303
LS R D IG ++ G V + +G F+ + + GL HVS++ +
Sbjct: 267 LSLRATQEDPWQVFAHDHAIGQIMPGVVTKVMNFGVFVRLAEDVEGLAHVSELLDSSLES 326
Query: 304 IATVLQPGDTLKVCL 318
V PGD + V +
Sbjct: 327 TEDVFSPGDEVFVKI 341
>gi|337747030|ref|YP_004641192.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus KNP414]
gi|379720890|ref|YP_005313021.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|386723496|ref|YP_006189822.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
gi|336298219|gb|AEI41322.1| RNA binding S1 domain protein [Paenibacillus mucilaginosus KNP414]
gi|378569562|gb|AFC29872.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus 3016]
gi|384090621|gb|AFH62057.1| RNA binding S1 domain-containing protein [Paenibacillus
mucilaginosus K02]
Length = 414
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKG V D A VD+ K +P +E ++ + + G + E ++ +
Sbjct: 33 GDIVKGKVIKVDADQAFVDVGYKYDGVVPVKELSSVQVDDASQ-NVEIGQEIELKVLTID 91
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R + E +W++ +++ KV KGG+V +V GLRGFVP S +
Sbjct: 92 DHREKLVLSKRAVDGEKSWDKLAADMENKTILEAKVAEVVKGGLVVDV-GLRGFVPASMV 150
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ + G+ L L+ E+D E+++++LS + + + A+L +G V+
Sbjct: 151 ERTFVEDFSDYKGRTLRLRVKEMDREKNKVILSQKDVLDEEFEGKKKEVLAKLSVGQVLD 210
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+DIGG++GL+H+S+++ V + V++ GD ++V
Sbjct: 211 GTVQRLTQFGAFVDIGGVDGLVHISEMAWHHVEKPSEVVKEGDKVQV 257
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQS 245
V+ G V + G ++ G+ G V S+++ + E++ G + ++ ++VD E
Sbjct: 208 VLDGTVQRLTQFGAFVDIGGVDGLVHISEMAWHHVEKPSEVVKEGDKVQVQVLKVDPENE 267
Query: 246 RLVLSNRKAMADSQAQ----LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + Q + G +V GTV+ L +GAFI++ G+ GL+H+SQI+H
Sbjct: 268 RISLSIKATQPGPWQQVAGRINTGDIVTGTVKRLVQFGAFIEVAPGVEGLVHISQIAHRH 327
Query: 301 VADIATVLQPGDTLKV 316
VA VL+ G+ +KV
Sbjct: 328 VATPQEVLKEGEEVKV 343
>gi|339444205|ref|YP_004710209.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
gi|338903957|dbj|BAK43808.1| hypothetical protein EGYY_05950 [Eggerthella sp. YY7918]
Length = 424
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 74/228 (32%), Positives = 128/228 (56%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G V GTV ++ LVDI KS +P++E I K + + IV G K E +++ +
Sbjct: 34 GDLVDGTVVKIEHDEVLVDIGFKSEGVIPSRELSIRK--DADPSDIVNLGDKIEALVLQK 91
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ D L+LS + +YE AW R + VV G+V+ KGG++ ++ GLRGF+P S
Sbjct: 92 EDKDGRLILSKKRAEYERAWIRVEEKFKAGEVVTGEVIEVVKGGLILDI-GLRGFLPASL 150
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVV 268
+ + + L ++ + +E+D ++ +VLS R + A+ ++L G +
Sbjct: 151 VDLRRVKDLDMYLNTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTKGMRL 210
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ GD ++V
Sbjct: 211 KGTVSSIVDFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGDEVEV 258
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 120/244 (49%), Gaps = 17/244 (6%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + + G V G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWIRVEEKFKAGEVVTGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLD 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYE-LAWERCRQLQ--SEDVVVKGKVVGANKG 201
+ + E +I + +++VLS R++ E ER L ++ + +KG V
Sbjct: 161 MYLNTEIEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLTKGMRLKGTVSSIVDF 220
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S +G ++ ++ ++VD ++ R+ L ++ D
Sbjct: 221 GAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGDEVEVEVLDVDLQRERISLGLKQTTED 280
Query: 258 SQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
+L +GS+V G V + P+GAFI++G I GL+H+S+++ + A V++ GD
Sbjct: 281 PWIKLVESYPVGSIVDGKVTKIVPFGAFIELGQSIEGLVHISEMAMKHIDTPAQVVKAGD 340
Query: 313 TLKV 316
+KV
Sbjct: 341 EVKV 344
>gi|420156930|ref|ZP_14663770.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
MSTE9]
gi|394756940|gb|EJF39999.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium sp.
MSTE9]
Length = 665
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 130/261 (49%), Gaps = 16/261 (6%)
Query: 73 TAPMEGVSFTLEE-----FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYL 127
T +EG T +E F LE+ + KV+G V VD+ K + ++
Sbjct: 280 TEIIEGAGLTEQESAESNFEEMLEESLKSLNTDEKVRGVVVGIAPNEIYVDVGRKQAGFV 339
Query: 128 PTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE 187
P E E+ + G + + +I+ N+ + +++LS + + WE + +
Sbjct: 340 PLSELSADPNAKTEDL-VKIGDELDLLIMRTNDQEGTIMLSKKRLDAVKGWETISEAEEN 398
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI--SSKSTAEELLGKDLPLKFVEVDEEQS 245
+ V+ G V KGGV+A G+R F+P SQ S + LL K++ + +EV+ ++
Sbjct: 399 ETVLTGVVTEVIKGGVIAVTNGVRVFIPASQATASRNDPLDALLKKEVKFRIIEVNRQRR 458
Query: 246 RLVLSNRKAMADSQAQLGI--------GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
R V S R + D + +L G G V+SL YGAF+D+GGI+G++H+S++S
Sbjct: 459 RAVGSIRSVLKDERKELADKFWETAEEGKEFTGVVKSLTAYGAFVDLGGIDGMVHISELS 518
Query: 298 HDRVADIATVLQPGDTLKVCL 318
+R+ + V+ GDT+KV +
Sbjct: 519 WNRIKHPSEVVNVGDTIKVYI 539
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 27/221 (12%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEE--FVIIGENEADDSLVLSLR 170
+G ++ +T ++P +A + ++ LK+E F II N V S+R
Sbjct: 411 KGGVIAVTNGVRVFIPASQATASRNDPLDAL-----LKKEVKFRIIEVNRQRRRAVGSIR 465
Query: 171 MI----QYELA---WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS-- 221
+ + ELA WE + + VVK G ++ G+ G V S++S
Sbjct: 466 SVLKDERKELADKFWETAEEGKEFTGVVKS----LTAYGAFVDLGGIDGMVHISELSWNR 521
Query: 222 -KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSL 275
K +E + +G + + +D+E+ ++ L +K + + +G+ V V L
Sbjct: 522 IKHPSEVVNVGDTIKVYIKGLDKEKGKISLGYKKDEDNPWEILKKDYPVGTTVEVQVVGL 581
Query: 276 KPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+GAF I GI+GL+H+SQI+ R+ L+ GD +K
Sbjct: 582 TTFGAFARIIPGIDGLIHISQIADHRIEKPQDALKNGDKVK 622
>gi|283458186|ref|YP_003362803.1| 30S ribosomal protein S1 [Rothia mucilaginosa DY-18]
gi|283134218|dbj|BAI64983.1| ribosomal protein S1 [Rothia mucilaginosa DY-18]
Length = 484
Score = 107 bits (267), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEF 153
FN G V G V D+ L+DI K+ +P++E I H I E + G + E
Sbjct: 30 FND--GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVEL--GSEVEA 85
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ D VV G V+ KGG++ ++ GLRGF
Sbjct: 86 LVLTKEDKEGRLILSKKRAQYERAWGDIEKVKENDGVVTGTVIEVVKGGLILDI-GLRGF 144
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
+P S + + + +G+ + K +E+D+ ++ +VLS R + ++Q+ +L
Sbjct: 145 LPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 KGQVREGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 257
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R E +E V +G V G ++ G+ G V S++
Sbjct: 178 NNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGAFVDLGGVDGLVHVSEL 237
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S K +G+ + ++ +EVD ++ R+ LS + D +G +V G
Sbjct: 238 SWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQEDPWQAFARTHALGQIVPGK 297
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
V L P+GAF+ + GI GL+H+S+++ R D+A
Sbjct: 298 VTKLVPFGAFVRVEDGIEGLVHISELAT-RHVDLA 331
>gi|229814996|ref|ZP_04445334.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
13280]
gi|229809483|gb|EEP45247.1| hypothetical protein COLINT_02039 [Collinsella intestinalis DSM
13280]
Length = 386
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 133/243 (54%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE ++ ++ + + G V GTV + LVDI KS +P +E I K + +
Sbjct: 18 EEMNNLIDNSITDFDEGDLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADL 77
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G E +++ + + D LVLS + +YE AW R + + V+G+V+ KGG+
Sbjct: 78 -VALGDSIEALVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNAGENVEGEVIEVVKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + LG + + +E+D ++ +VLS R + +S+
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDLTSYLGTRIEARVIEMDRNRNNVVLSRRVVLEESRKA 195
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
++L G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 196 ERSEILSKLKSGMRLKGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQE 255
Query: 314 LKV 316
++V
Sbjct: 256 VEV 258
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRIEEKFNAGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLT 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G + E +I + +++VLS R++ E R+ + +++ +KG V
Sbjct: 161 SYLGTRIEARVIEMDRNRNNVVLSRRVV-----LEESRKAERSEILSKLKSGMRLKGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V GTV L P+GAF+D+G GI GL+H+S++++ V A V
Sbjct: 276 QTTEDPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQV 335
Query: 308 LQPGDTLKV 316
G ++V
Sbjct: 336 TAVGSKVQV 344
>gi|139437094|ref|ZP_01771254.1| Hypothetical protein COLAER_00232 [Collinsella aerofaciens ATCC
25986]
gi|133776741|gb|EBA40561.1| 30S ribosomal protein S1 [Collinsella aerofaciens ATCC 25986]
Length = 369
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 129/234 (55%), Gaps = 16/234 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEE 152
DF+ G V GTV ++ LVDI KS +P +E I K A IV G E
Sbjct: 11 DFDE--GDLVNGTVVKIEHDEVLVDIGFKSEGVIPVRELSIRK--DANPADIVALGDPIE 66
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + + D LVLS + +YE AW R + + V+G+V+ KGG++ ++ GLRG
Sbjct: 67 ALVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNSGENVEGEVIEVVKGGLILDI-GLRG 125
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQL 262
F+P S + + + +G + + +E+D ++ +VLS R + +S+ ++L
Sbjct: 126 FLPASLVDLRRVKDLTSYMGTRIEARVIEMDRNRNNVVLSRRVVLEESRKAERSEILSKL 185
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G ++V
Sbjct: 186 KSGMRLQGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEV 239
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/251 (25%), Positives = 122/251 (48%), Gaps = 31/251 (12%)
Query: 85 EFHSALEKYD--FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+ A + + FNS G V+G V G ++DI + +LP A + ++ V++
Sbjct: 87 EYERAWNRIEEKFNS--GENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKD 139
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK--------GK 194
G + E +I + +++VLS R++ E R+ + +++ K G
Sbjct: 140 LTSYMGTRIEARVIEMDRNRNNVVLSRRVV-----LEESRKAERSEILSKLKSGMRLQGT 194
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLS 250
V G ++ G+ G + S++S +G+++ ++ ++VD + R+ L
Sbjct: 195 VSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLG 254
Query: 251 NRKAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIA 305
++ D L +G++V GTV L P+GAF+D+G GI GL+H+S++++ V +
Sbjct: 255 LKQTTEDPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGEGIEGLVHISEMANKHVDQPS 314
Query: 306 TVLQPGDTLKV 316
V GD ++V
Sbjct: 315 QVTHVGDKVQV 325
>gi|365827220|ref|ZP_09369084.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str.
F0330]
gi|365265226|gb|EHM94999.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 849 str.
F0330]
Length = 484
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 213 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|422324913|ref|ZP_16405950.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
gi|353343622|gb|EHB87937.1| 30S ribosomal protein S1 [Rothia mucilaginosa M508]
Length = 484
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 128/233 (54%), Gaps = 16/233 (6%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEF 153
FN G V G V D+ L+DI K+ +P++E I H I E + G + E
Sbjct: 30 FND--GDLVSGQVVKIDHDEVLLDIGYKTEGVIPSRELSIKHDIDPSEVVEL--GSEVEA 85
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + QYE AW +++ D VV G V+ KGG++ ++ GLRGF
Sbjct: 86 LVLTKEDKEGRLILSKKRAQYERAWGDIEKVKENDGVVTGTVIEVVKGGLILDI-GLRGF 144
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
+P S + + + +G+ + K +E+D+ ++ +VLS R + ++Q+ +L
Sbjct: 145 LPASLVEMRRVRDLAPYIGQQIEAKIIELDKNRNNVVLSRRAYLEETQSAVRSSFLNELE 204
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 205 KGQVREGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQPVTV 257
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 100/215 (46%), Gaps = 18/215 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 123 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLAPYIGQQIEAKIIELDKNR 177
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+++VLS R E +E V +G V G ++ G+ G V S++
Sbjct: 178 NNVVLSRRAYLEETQSAVRSSFLNELEKGQVREGVVSSIVNFGAFVDLGGVDGLVHVSEL 237
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGT 271
S K +G+ + ++ +EVD ++ R+ LS + D +G +V G
Sbjct: 238 SWKHIDHPSEVVEVGQPVTVEVLEVDLDRERVSLSLKATQEDPWQAFARTHALGQIVPGK 297
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
V L P+GAF+ + GI GL+H+S+++ R D+A
Sbjct: 298 VTKLVPFGAFVRVEDGIEGLVHISELAT-RHVDLA 331
>gi|400291413|ref|ZP_10793431.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
gi|399903470|gb|EJN86207.1| 30S ribosomal protein S1 [Actinomyces naeslundii str. Howell 279]
Length = 484
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 213 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|373494740|ref|ZP_09585339.1| hypothetical protein HMPREF0380_00977 [Eubacterium infirmum F0142]
gi|371967784|gb|EHO85252.1| hypothetical protein HMPREF0380_00977 [Eubacterium infirmum F0142]
Length = 622
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 119/227 (52%), Gaps = 11/227 (4%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V +R +V++ K LP +E + + + + + PG + + ++ +
Sbjct: 261 GEIVDGKVHQVSDREVIVNLGCKKDGILPVEEVTLEEGEKLTDL-FQPGDEIQAKVVKTD 319
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ D S++LS + ++ W + V+ KV+ A GGV+A + + GF+P SQ+
Sbjct: 320 DGDGSILLSKKKLEISKHWAEINEAHENKTVITVKVLRAVNGGVIAAYKEVTGFIPMSQL 379
Query: 220 SSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL--------GIGSVVI 269
S + A+E +G+ + VD +++R + S++ + + +L +G +V
Sbjct: 380 SDRYVENADEFIGQTFDVLVTRVDAKRNRALFSHKAILLAEKQKLISGIWDSISVGDIVE 439
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV YGAF+DIGGI+GLLH+S+IS ++ VL+ G T++V
Sbjct: 440 GTVMRFTDYGAFVDIGGIDGLLHISEISWGKLKHPQEVLETGQTVQV 486
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 77/131 (58%), Gaps = 9/131 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS--SKSTAEELL--GKDLPLKFVEVDEEQS 245
+V+G V+ G ++ G+ G + S+IS +E+L G+ + +K + +++E+
Sbjct: 437 IVEGTVMRFTDYGAFVDIGGIDGLLHISEISWGKLKHPQEVLETGQTVQVKVLSMNQEKG 496
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
++ L ++ + + + +G +V G V +K YGAF+++ G++GL+H+S+++H R
Sbjct: 497 KISLGLKQITPEPWSVINDKYHVGEIVSGKVVQIKEYGAFVELEPGLDGLVHISEVAHKR 556
Query: 301 VADIATVLQPG 311
V+DIA LQ G
Sbjct: 557 VSDIAEELQLG 567
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 77/162 (47%), Gaps = 8/162 (4%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
+G V+GTV + GA VDI L E K+KH +E + G + ++
Sbjct: 434 VGDIVEGTVMRFTDYGAFVDIGG-IDGLLHISEISWGKLKHPQEV-LETGQTVQVKVLSM 491
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFS 217
N+ + L L+ I E W +V GKVV + G E+E GL G V S
Sbjct: 492 NQEKGKISLGLKQITPE-PWSVINDKYHVGEIVSGKVVQIKEYGAFVELEPGLDGLVHIS 550
Query: 218 QISSK---STAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAM 255
+++ K AEEL LG+ + K +++D ++ R+ LS + A+
Sbjct: 551 EVAHKRVSDIAEELQLGQIVDTKILDIDVDRKRISLSIKAAI 592
>gi|210631374|ref|ZP_03296877.1| hypothetical protein COLSTE_00762 [Collinsella stercoris DSM 13279]
gi|210160057|gb|EEA91028.1| 30S ribosomal protein S1 [Collinsella stercoris DSM 13279]
Length = 386
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 133/243 (54%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE ++ ++ + + G V GTV + LVDI KS +P +E I K + +
Sbjct: 18 EEMNNLIDNSITDFDEGDLVNGTVVKIERDEVLVDIGFKSEGVIPVRELSIRKDANPADL 77
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G E +++ + + D LVLS + +YE AW R + + V+G+V+ KGG+
Sbjct: 78 -VALGDSIEALVLQKEDKDGRLVLSKKRAEYERAWNRIEEKFNAGENVEGEVIEVVKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + LG + + +E+D ++ +VLS R + +S+
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDLTSYLGTRIEARVIEMDRNRNNVVLSRRVVLEESRKA 195
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
++L G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 196 ERSEILSKLKSGMRLKGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQE 255
Query: 314 LKV 316
++V
Sbjct: 256 VEV 258
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRIEEKFNAGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLT 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G + E +I + +++VLS R++ E R+ + +++ +KG V
Sbjct: 161 SYLGTRIEARVIEMDRNRNNVVLSRRVV-----LEESRKAERSEILSKLKSGMRLKGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVEVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V GTV L P+GAF+D+G GI GL+H+S++++ V A V
Sbjct: 276 QTTEDPWRALVKKYPVGAIVEGTVTKLVPFGAFVDLGDGIEGLVHISEMANKHVDQPAQV 335
Query: 308 LQPGDTLKV 316
G ++V
Sbjct: 336 TAVGAKVQV 344
>gi|320531284|ref|ZP_08032260.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
F0337]
gi|320136487|gb|EFW28459.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 171 str.
F0337]
Length = 484
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 213 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|329946785|ref|ZP_08294197.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
F0386]
gi|328526596|gb|EGF53609.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 170 str.
F0386]
Length = 484
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 213 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|172057815|ref|YP_001814275.1| RNA-binding S1 domain-containing protein [Exiguobacterium sibiricum
255-15]
gi|171990336|gb|ACB61258.1| RNA binding S1 domain protein [Exiguobacterium sibiricum 255-15]
Length = 377
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 130/237 (54%), Gaps = 22/237 (9%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF V GTV +++ AL+DI K+ A LP E + ++ A V +E
Sbjct: 10 DFEIHRDQVVTGTVVKIEDKQALIDIGYKTEAILPISEVSSLHLDDIQGALKVG---DEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DVVVKGKVVGANKGGVVAEVEG 209
+ + D+ +V+S R + AWE+ + +VVVK V KGG+V ++ G
Sbjct: 67 QVKVKKITDEEVVVSKREVDALQAWEKVEAKYASGEIFEVVVKDIV----KGGLVVDI-G 121
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQ 259
+RGF+P S + + + +G+ + +K VE+D+E++R++LS++ + ++
Sbjct: 122 VRGFIPASLVERHYVEDFSDYIGRTIAVKVVELDQEKNRVILSHKAVVEGELNAKKKETL 181
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +G V+ GTVQ L +GAF+DIGG++GL+H+S+++H RV + ++ G ++V
Sbjct: 182 EHLEVGQVLEGTVQRLTDFGAFVDIGGVDGLVHISEMAHHRVERPSDIVTEGQKVEV 238
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 64/131 (48%), Gaps = 9/131 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V++G V G ++ G+ G V S+++ G+ + +K + VD +
Sbjct: 189 VLEGTVQRLTDFGAFVDIGGVDGLVHISEMAHHRVERPSDIVTEGQKVEVKVLGVDRDTE 248
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS ++ Q+ G +V G V+ + +GAF+++ + GLLH+SQI++
Sbjct: 249 KVKLSIKETQPGPWQQMEGKIEAGDIVKGRVRRIVQFGAFVELAPQVEGLLHISQIANRH 308
Query: 301 VADIATVLQPG 311
+ + VL+ G
Sbjct: 309 IGSPSEVLEEG 319
>gi|325068715|ref|ZP_08127388.1| 30S ribosomal protein S1 [Actinomyces oris K20]
gi|326773413|ref|ZP_08232696.1| ribosomal protein S1 [Actinomyces viscosus C505]
gi|343522613|ref|ZP_08759579.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str.
F0384]
gi|326636643|gb|EGE37546.1| ribosomal protein S1 [Actinomyces viscosus C505]
gi|343402022|gb|EGV14528.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 175 str.
F0384]
Length = 484
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 127/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERIKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G+ + V
Sbjct: 213 SGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGNEVTV 260
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 111/238 (46%), Gaps = 41/238 (17%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RSGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G ++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGNEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
IG VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|299538552|ref|ZP_07051835.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZC1]
gi|298726139|gb|EFI66731.1| 30S ribosomal protein S1-like protein [Lysinibacillus fusiformis
ZC1]
Length = 378
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 17/233 (7%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
FN G VKG D + V I A +P E H+E+A V + +E
Sbjct: 12 FNE--GDIVKGIAAQVDEKAVSVSIPGAPFDGIVPISELSS---LHIEKASDVISVGDEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
++ +++ VLS R + AW+ Q + + + + +V KGG+V ++ G+RGF
Sbjct: 67 ELMITKVEEENFVLSKRKVDALKAWDTLEQQFAAEEIFEAEVKDIVKGGLVVDL-GVRGF 125
Query: 214 VPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
VP S + E G+ L K VE+D+ ++RL+LS+R + +A Q+
Sbjct: 126 VPASLVEDYFVDDFEGYKGQILSFKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIK 185
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G VQ L +GAFID+GGI+GL+H+SQ+SH+ V+D++ VL G +KV
Sbjct: 186 AGDVLDGKVQRLASFGAFIDLGGIDGLVHISQVSHEHVSDVSEVLAEGQDVKV 238
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 99/177 (55%), Gaps = 14/177 (7%)
Query: 153 FVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVVAEVE 208
F I+ ++ + L+LS R +++ E A ++ Q+++ DV+ GKV G ++
Sbjct: 149 FKIVELDKGKNRLILSHRAVVEAEKASQKKNVINQIKAGDVL-DGKVQRLASFGAFIDLG 207
Query: 209 GLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQA 260
G+ G V SQ+S + S E+L G+D+ +K + VD E R+ LS ++ + ++ +
Sbjct: 208 GIDGLVHISQVSHEHVSDVSEVLAEGQDVKVKVLSVDPENERISLSIKETIPGPWSNIEE 267
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+++ G V+ L +GAF+++ G+ GL+H+SQI+H + L+ G ++V
Sbjct: 268 RAAKGTILDGRVKRLTSFGAFVEVFPGVEGLVHISQIAHKHINTPHEALKEGQEVQV 324
>gi|352518176|ref|YP_004887493.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
gi|348602283|dbj|BAK95329.1| 30S ribosomal protein S1 [Tetragenococcus halophilus NBRC 12172]
Length = 405
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 124/236 (52%), Gaps = 14/236 (5%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
+ ++G VKG V ++R A++ I +P +E ++ + E V + + V
Sbjct: 25 DVKVGDIVKGEVLALEDRQAIIGIEGTGVEGVVPAKELSTLPVEDINEVVKVGDVLDLVV 84
Query: 155 I--IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I IG+++ + S +LS R + + WE + ++ V KGG+V +V G+RG
Sbjct: 85 ISSIGKDKENGSYLLSKRRLDAKKVWEEIEEKYQNGETIEAPVTNVVKGGLVVDV-GVRG 143
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQL 262
FVP S + + E GK L K +E++ ++RL+LS++ + + + A +
Sbjct: 144 FVPASMVEDYFVDDFNEYKGKTLEFKIIEIEPSENRLILSHKAIVEEEKEQKKAELLASI 203
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ GTV L +GAFID+GGI+GL+HVS+ISH V + VL GD + V +
Sbjct: 204 SEGDVIEGTVARLTDFGAFIDLGGIDGLVHVSEISHSHVGKPSDVLSVGDKVNVAV 259
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQ---SEDVVVKGKVVGANKGGVVAEVE 208
EF II +++ L+LS + I E ++ +L SE V++G V G ++
Sbjct: 167 EFKIIEIEPSENRLILSHKAIVEEEKEQKKAELLASISEGDVIEGTVARLTDFGAFIDLG 226
Query: 209 GLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAM----ADSQA 260
G+ G V S+IS + +G + + + VD R+ LS + + D +
Sbjct: 227 GIDGLVHVSEISHSHVGKPSDVLSVGDKVNVAVLSVDPTTERVSLSIKDTLPGPWTDIEE 286
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH +A VL GD ++V
Sbjct: 287 KAPKGAVLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPHEVLSEGDQIQV 343
>gi|342214801|ref|ZP_08707474.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 780 str. F0422]
gi|341590624|gb|EGS33861.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 780 str. F0422]
Length = 635
Score = 107 bits (267), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 11/229 (4%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++G V D+ A V K+ A L +E ++ + G K + VI+
Sbjct: 294 GNVIEGEVVQIDDERAYVSFGYKTEAQLERKEMAYPTPASAKDV-LKEGDKIKAVILNHI 352
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ- 218
+ D + LS+ + + W+ + Q +D + K V A G+V V+ LRGF+P SQ
Sbjct: 353 KEDSPIYLSITRLAKDEDWQYVIEAQEKDEPIICKGVDAIPAGLVVTVKSLRGFIPLSQG 412
Query: 219 -ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADSQAQLG-------IGSVVI 269
I + + L+G + K +EV+E+++RLVLS R+ + + QA+L +G
Sbjct: 413 DIHFVKSLDNLVGTEFEAKVLEVEEKKNRLVLSRREVLEVERQAKLKEALANVEVGGTYK 472
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
GTV+ + PYGAF+DIGGI GLLH+S IS ++ + VL G + V L
Sbjct: 473 GTVRKIMPYGAFVDIGGIEGLLHISDISWQKIKRVEDVLAVGQEIDVKL 521
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + IH +K ++ + G + E ++ E + LVLS R +
Sbjct: 398 VTVKSLRGFIPLSQGDIHFVKSLDN---LVGTEFEAKVLEVEEKKNRLVLSRREV----- 449
Query: 178 WERCRQLQSEDVVVKGKVVGANKG--------GVVAEVEGLRGFVPFSQISSKST--AEE 227
E RQ + ++ + +V G KG G ++ G+ G + S IS + E+
Sbjct: 450 LEVERQAKLKEALANVEVGGTYKGTVRKIMPYGAFVDIGGIEGLLHISDISWQKIKRVED 509
Query: 228 LL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYGA 280
+L G+++ +K DEE S++ LS KA++ S + + +G VV G V YGA
Sbjct: 510 VLAVGQEIDVKLQSFDEENSKISLS-LKALSKSPWDVAEETIHVGDVVTGKVVRTVQYGA 568
Query: 281 FIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
F+ I I GLLH+SQ++ R A + L G ++V
Sbjct: 569 FVAINDDIQGLLHISQVTKQRNAKVEDYLSRGQEVEV 605
>gi|227496060|ref|ZP_03926369.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
gi|226834388|gb|EEH66771.1| 30S ribosomal protein S1 [Actinomyces urogenitalis DSM 15434]
Length = 483
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERVKEEDGVVTGTVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAWLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 213 TGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/223 (27%), Positives = 106/223 (47%), Gaps = 41/223 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG+V + GVV+ ++
Sbjct: 181 NNVVLSRR------AW--LEQTQSEVRTNFLQTLQKGQV----RTGVVSSIVNFGAFVDL 228
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 229 GGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQAFA 288
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRV 301
IG VV G V L P+GAF+ + GI GL+H+S+++ V
Sbjct: 289 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHV 331
>gi|238019394|ref|ZP_04599820.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
gi|237864093|gb|EEP65383.1| hypothetical protein VEIDISOL_01258 [Veillonella dispar ATCC 17748]
Length = 632
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGDNYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGDNYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVINGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|373464323|ref|ZP_09555862.1| putative ribosomal protein S1 [Lactobacillus kisonensis F0435]
gi|371762525|gb|EHO51054.1| putative ribosomal protein S1 [Lactobacillus kisonensis F0435]
Length = 409
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 125/235 (53%), Gaps = 22/235 (9%)
Query: 98 ELGTKVKGTVFCTD-NRGALVDITAKS-SAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFV 154
++G V G V TD NR +V I +P +E K +++ G K + V
Sbjct: 23 KVGDVVTGEVLATDDNRQLIVGIEGSGVEGVVPERELDSSQKFDDIKQ-----GDKLKLV 77
Query: 155 I---IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
+ IG ++ S VLS R ++ W+ + D + KV A KGG+V + G+R
Sbjct: 78 VTSRIGSDKEGGSFVLSSRQLETRKVWDELAEKSKNDETITAKVSQAVKGGLVVDA-GVR 136
Query: 212 GFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
GF+P S IS + G++L LK +E+D ++RL+LS++ + +A+
Sbjct: 137 GFIPASMISDHFVDNLNQFKGQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQT 196
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G VV GTV L +GAF+D+GG++GL+HVSQI+++RV + VL+ G +KV
Sbjct: 197 LHEGDVVEGTVARLTSFGAFVDLGGMDGLVHVSQIAYERVDKPSDVLKVGQQVKV 251
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 23/257 (8%)
Query: 77 EGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDN-----RGALVDITAKSSAYLPTQE 131
EG SF L LE EL K K T +G LV + A ++P
Sbjct: 87 EGGSFVLSS--RQLETRKVWDELAEKSKNDETITAKVSQAVKGGLV-VDAGVRGFIPASM 143
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--ED 188
H + ++ + G + E II + ++ L+LS + ++Q E A ER + +Q+ E
Sbjct: 144 ISDHFVDNLNQ---FKGQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQTLHEG 200
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQ 244
VV+G V G ++ G+ G V SQI+ K + +G+ + +K + VD ++
Sbjct: 201 DVVEGTVARLTSFGAFVDLGGMDGLVHVSQIAYERVDKPSDVLKVGQQVKVKVLSVDFDR 260
Query: 245 SRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
+R+ LS ++ + + + + +GSV+ GTV+ L +GAF+++ G+ GL+H+SQISH+
Sbjct: 261 NRISLSIKQTLPEPWDGIEEKAPVGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQISHE 320
Query: 300 RVADIATVLQPGDTLKV 316
+A VL+ G+T++V
Sbjct: 321 HIATPGDVLKVGETIQV 337
>gi|121535824|ref|ZP_01667624.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
gi|121305596|gb|EAX46538.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosinus
carboxydivorans Nor1]
Length = 655
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 125/252 (49%), Gaps = 13/252 (5%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
+E V ++EF L++ E G +KG V VDI K +P E
Sbjct: 265 IEEVYSKMQEFDQLLDQDMKPLEPGVILKGRVVGVRKDEVFVDIGHKGEGVIPLTELAYP 324
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGK 194
++ + +V E V + E DD V LS +AWE+ + + V GK
Sbjct: 325 VPENASD--VVSEGDEIDVYVLAPEGDDGPVKLSKVKADNIVAWEKLQAAAQANETVTGK 382
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR 252
V KGG+ + G+RGFVP SQ++ + A+ +G+ L L +E+D+ + ++VLS R
Sbjct: 383 VTAVVKGGLAVSLYGVRGFVPASQVAVQHVADLTPYVGQTLELLPIEIDQAKQKIVLSRR 442
Query: 253 KAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
K + Q ++L G +V GTV + +G F+D+GG++GL+H+S +S RV +
Sbjct: 443 KVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFVDLGGVDGLIHISDLSWHRVKNP 502
Query: 305 ATVLQPGDTLKV 316
V+ GD ++V
Sbjct: 503 TEVVNIGDEVQV 514
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 107/240 (44%), Gaps = 16/240 (6%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
A EK ++ V G V G V + ++P + + +HV + G
Sbjct: 365 AWEKLQAAAQANETVTGKVTAVVKGGLAVSLYG-VRGFVPASQVAV---QHVADLTPYVG 420
Query: 149 LKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVA 205
E + I ++A +VLS R + + R +L S E +V G V GV
Sbjct: 421 QTLELLPIEIDQAKQKIVLSRRKVLEQEQQRRAEELFSRLAEGQIVTGTVSRIADFGVFV 480
Query: 206 EVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLS----NRKAMAD 257
++ G+ G + S +S K+ E + +G ++ + +VD + R+ LS R D
Sbjct: 481 DLGGVDGLIHISDLSWHRVKNPTEVVNIGDEVQVFVQKVDPKAKRISLSLKRVQRDPWYD 540
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V G V L +GAF+++ G+ GL+H+S+++ RVA V++ G T+ V
Sbjct: 541 VVEGLREGMTVAGKVTKLAKFGAFVEVKPGVEGLVHLSELADRRVASAQEVVEVGQTVTV 600
>gi|357054555|ref|ZP_09115637.1| hypothetical protein HMPREF9467_02609 [Clostridium clostridioforme
2_1_49FAA]
gi|355384155|gb|EHG31224.1| hypothetical protein HMPREF9467_02609 [Clostridium clostridioforme
2_1_49FAA]
Length = 258
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPL 235
W R Q+ + VVK K+ A KGGVV +E +R F+P SQ+S++ E+ GK +
Sbjct: 58 WARFAQMMEDRTVVKVKIAEAVKGGVVTSLEEVRAFIPASQLSTEYVEKLEDWQGKYVEA 117
Query: 236 KFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVIGTVQSLKPYGAFIDI-GG 286
+ VD E+ RLVLS R+ + AQ G +V GTV S+KPYGAFI + G
Sbjct: 118 VIITVDPEKKRLVLSGREVEKEKKEAQKKERMAQFKAGDIVEGTVDSIKPYGAFIKLDDG 177
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++GLLHVSQIS R+ + VL G T+KV +
Sbjct: 178 VDGLLHVSQISTQRIKHPSAVLTEGQTVKVKI 209
>gi|220931888|ref|YP_002508796.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
orenii H 168]
gi|219993198|gb|ACL69801.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Halothermothrix
orenii H 168]
Length = 678
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 129/238 (54%), Gaps = 16/238 (6%)
Query: 93 YDFNS----ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
YD N+ + G +VKG V + G VD+ K+ +P +E + E + G
Sbjct: 295 YDDNNPADLKKGQQVKGKVVEIGDNGVYVDVGYKTEGLIPLRELSHRDFEDPHEI-VEEG 353
Query: 149 LKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE 208
+ + +++ + + ++VLS + +E AWER + D +++ +V KGG+V ++
Sbjct: 354 EEIDVIVLTLEDEEGNMVLSKKRADFEKAWERILKAYENDEIIEAEVTREVKGGLVVDI- 412
Query: 209 GLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA------ 260
GLRGFV S ++ + + +GK L LK +EV+ +++ +VLS +K + + +
Sbjct: 413 GLRGFVHASHVAIGYVEDLSDYVGKTLRLKVIEVERDKNNVVLSAKKVLEEEREKQKEKT 472
Query: 261 --QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+L G VV G V + +GAF+D+GGI GLLH+S++S R+ + VL+ G ++V
Sbjct: 473 LEELQEGQVVKGKVTKIVDFGAFVDLGGIEGLLHISEMSWGRIEHPSEVLEEGQEIEV 530
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKST--AEELL--GKDLPLKFVEVDEEQS 245
VVKGKV G ++ G+ G + S++S E+L G+++ +K + V++E+
Sbjct: 481 VVKGKVTKIVDFGAFVDLGGIEGLLHISEMSWGRIEHPSEVLEEGQEIEVKVLAVNKEEE 540
Query: 246 RLVLSNRKAMADSQAQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ L ++ + D + G VV GT+ + +GAF++I GI GL+H+SQ+SH
Sbjct: 541 RISLGLKQLLPDPWEEFAKKHYEGEVVSGTITKIVDFGAFMEIENGIEGLIHISQLSHRH 600
Query: 301 VADIATVLQPGDTLK 315
V V+ G+ +K
Sbjct: 601 VKTPDEVVSVGEEIK 615
>gi|375009283|ref|YP_004982916.1| 30S ribosomal protein S1 [Geobacillus thermoleovorans CCB_US3_UF5]
gi|359288132|gb|AEV19816.1| 30S ribosomal protein S1 [Geobacillus thermoleovorans CCB_US3_UF5]
Length = 387
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 23/237 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEA---GIVPGLKEEF 153
E+G V+G V +++ LV++ +K S +P E I+ +A G K +
Sbjct: 13 EVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAVGDEVTAKVKK 72
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERC-RQLQSEDV---VVKGKVVGANKGGVVAEVEG 209
V G++ + L+LS R + E AWE R+ S + V+K V KGG+VA+V G
Sbjct: 73 VEEGKDGEEGLLILSKRAVDAERAWEDLERKFASGETFETVIKDIV----KGGLVADV-G 127
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+RGF+P S + + + GK L +K VE+D E++R++LS+R + + QA+
Sbjct: 128 VRGFIPASLVEPHYVEDFSDYKGKTLSVKVVELDREKNRVILSHRAVVEEEQARQQKELL 187
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA + V++ GD +KV
Sbjct: 188 SRLEPGQVLDGVVRRIADFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKV 244
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A E++ G + +K + VD E RL LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAVDPENGRLSLSIKEALPG 266
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
L G VV GTV+ L +GAF+++ G+ GL+HVSQI++ R+ VL+ GD
Sbjct: 267 PWEGLSEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326
Query: 313 TLK 315
+K
Sbjct: 327 VVK 329
>gi|297529605|ref|YP_003670880.1| RNA binding S1 domain-containing protein [Geobacillus sp. C56-T3]
gi|297252857|gb|ADI26303.1| RNA binding S1 domain protein [Geobacillus sp. C56-T3]
Length = 387
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 23/237 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPG---LKEEF 153
E+G V+G V +++ LV++ +K S +P E I+ +A V K +
Sbjct: 13 EVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAVGDEVTAKVKK 72
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQL----QSEDVVVKGKVVGANKGGVVAEVEG 209
V G++ + L+LS R + E AWE + ++ + V+K V KGG+VA+V G
Sbjct: 73 VEEGKDGEEGLLILSKRAVDAERAWEDLERKFANGETFETVIKDIV----KGGLVADV-G 127
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+RGF+P S + + + GK L +K VE+D E++R++LS+R + + QA+
Sbjct: 128 VRGFIPASLVEPHYVEDFSDYKGKTLSVKVVELDREKNRVILSHRAVVEEEQARQQKELL 187
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA + V++ GD +KV
Sbjct: 188 SRLEPGQVLDGVVRRIADFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDVVKV 244
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A E++ G + +K + VD E RL LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDVVKVKVLAVDPENGRLSLSIKEALPG 266
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
L G VV GTV+ L +GAF+++ G+ GL+HVSQI++ R+ VL+ GD
Sbjct: 267 PWEGLSEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326
Query: 313 TLK 315
+K
Sbjct: 327 VVK 329
>gi|148543994|ref|YP_001271364.1| 30S ribosomal protein S1 [Lactobacillus reuteri DSM 20016]
gi|184153388|ref|YP_001841729.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194467922|ref|ZP_03073908.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227364907|ref|ZP_03848952.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227543421|ref|ZP_03973470.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|325682468|ref|ZP_08161985.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|338204370|ref|YP_004650515.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
gi|148531028|gb|ABQ83027.1| SSU ribosomal protein S1P [Lactobacillus reuteri DSM 20016]
gi|183224732|dbj|BAG25249.1| 30S ribosomal protein S1 [Lactobacillus reuteri JCM 1112]
gi|194452775|gb|EDX41673.1| RNA binding S1 domain protein [Lactobacillus reuteri 100-23]
gi|227070054|gb|EEI08432.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM2-3]
gi|227186600|gb|EEI66671.1| 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A]
gi|324978307|gb|EGC15257.1| 30S ribosomal protein S1 [Lactobacillus reuteri MM4-1A]
gi|336449610|gb|AEI58225.1| 30S ribosomal protein S1 [Lactobacillus reuteri SD2112]
Length = 416
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 128/234 (54%), Gaps = 17/234 (7%)
Query: 98 ELGTKVKGTVFC-TDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
++G VKG V D+R A+V I A +P +E ++ + +A V G + + V+
Sbjct: 22 KVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKV-GDELDLVV 80
Query: 156 I---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I G ++ + S +LS R ++ W+ ++ E + KV A KGG+V + G+RG
Sbjct: 81 ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAKVTQAVKGGLVVDA-GVRG 139
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR--------KAMADSQAQL 262
FVP S I+ + + G++L K VE++ ++RL+LS++ KA A+L
Sbjct: 140 FVPASMITDHYVEDLNQFKGQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAEL 199
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V + +GAFID+GG++GL+HVS+IS+D V + VL G +KV
Sbjct: 200 QPGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKV 253
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
+K+D + KV V +G LV + A ++P H +VE+ G +
Sbjct: 111 KKFDEGEHITAKVTQAV-----KGGLV-VDAGVRGFVPASMITDH---YVEDLNQFKGQE 161
Query: 151 EEFVIIGENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAE 206
EF I+ +++ L+LS + I Q+E A E+ +LQ DVV +GKV G +
Sbjct: 162 LEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVV-EGKVARMTNFGAFID 220
Query: 207 VEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DS 258
+ G+ G V S+IS K + G+D+ +K + VD E+ R+ LS ++ + D
Sbjct: 221 LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPWDDI 280
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + + SV+ GTV+ L +GAF+++ G+ GL+H+SQISH +A A VL+PG ++V
Sbjct: 281 EEKAPVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQV 339
>gi|341614635|ref|ZP_08701504.1| 30S ribosomal protein S1 [Citromicrobium sp. JLT1363]
Length = 567
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 122/229 (53%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV +N AL+D+ KS + +E ++ +E G+ G + E +
Sbjct: 30 GRVVKGTVTAIENGMALIDVGLKSEGRVDLREF----MRVDDEHGLEVGSEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW+R E V+G++ G KGG +++G F+P SQ+
Sbjct: 86 NADGEAMLSRDRARREAAWDRLESEFGEGKRVEGRIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVI 269
+ + L+ + P + +++D + +V+S R + +++A QL G VV
Sbjct: 146 DIRPVRDVTPLMDQPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDQLAEGQVVD 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V++ G T+ V +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIEIGQTVTVQI 254
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +V+G +F G VD+ + A+LP + I ++ V P + F I+ +
Sbjct: 114 GKRVEGRIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVTPLMDQP---QPFQILKMD 169
Query: 160 EADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
++V+S R + E E+ +L +E VV G V G ++ G+ G +
Sbjct: 170 RRRGNIVVSRRAVLEETRAEQRSELIDQLAEGQVVDGVVKNITDYGAFVDLGGIDGLLHV 229
Query: 217 SQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVV 268
+ +S K +G+ + ++ + ++ E R+ L ++ +D A+ +G +
Sbjct: 230 TDMSYKRVNHPSEVIEIGQTVTVQIIRINAETQRISLGMKQLESDPWDGVAAKYPVGMKL 289
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V ++ YGAF+++ GI GL+HVS++S
Sbjct: 290 TGQVTNITEYGAFVEVEPGIEGLVHVSEMS 319
Score = 41.2 bits (95), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 24/214 (11%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V + GA VD+ L + ++ H E I G II N
Sbjct: 201 GQVVDGVVKNITDYGAFVDLGG-IDGLLHVTDMSYKRVNHPSEV-IEIGQTVTVQIIRIN 258
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ L ++ ++ + W+ + + G+V + G EVE G+ G V S+
Sbjct: 259 AETQRISLGMKQLESD-PWDGVAAKYPVGMKLTGQVTNITEYGAFVEVEPGIEGLVHVSE 317
Query: 219 ISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
+S ST++E+ + +EVD E+ R+ L ++A + + I
Sbjct: 318 MSWTKKNVHPGKIVSTSQEV-----EVMVLEVDSEKRRISLGLKQAQRNPWEEFAEAHPI 372
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
GS V G V++ +G FI + G ++G++H+S I+
Sbjct: 373 GSEVEGEVKNATEFGLFIGLPGDVDGMVHMSDIA 406
>gi|302391808|ref|YP_003827628.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
gi|302203885|gb|ADL12563.1| hydroxymethylbutenyl pyrophosphate reductase [Acetohalobium
arabaticum DSM 5501]
Length = 676
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 123/226 (54%), Gaps = 12/226 (5%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
D + E G + GTV + VDI AKS +P+ E + + + E
Sbjct: 293 DTDIERGEALTGTVEQITDDEVYVDIGAKSEGIIPSHELSNQQFESPSDVVQEGEEVEVQ 352
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
V+ ENE D ++VLS + E +W+R ++ D +++ ++ KGG+VA+V GLRGF
Sbjct: 353 VLNQENE-DGNIVLSKKKQDQEKSWQRVEKVYENDEIIEAEITKEVKGGLVADV-GLRGF 410
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLG 263
+P S ++ + + + +G+ L LK +EV+ + + +VLS ++ + + + A L
Sbjct: 411 IPASHVAIEYVEDLSQYVGETLQLKIIEVERDNNNVVLSRKEVLEEERAKKKEEIFASLE 470
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
G V+ G V L +GAF+DIGG+ GLLH+S++S R+ + VL+
Sbjct: 471 EGEVIEGRVTKLVDFGAFVDIGGVEGLLHISEMSWGRIDHPSDVLE 516
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 68/137 (49%), Gaps = 13/137 (9%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS------SKSTAEELLGKDLPLKFVEVDEE 243
V++G+V G ++ G+ G + S++S EE ++ +K + V E
Sbjct: 474 VIEGRVTKLVDFGAFVDIGGVEGLLHISEMSWGRIDHPSDVLEE--AQETEVKVLGVKPE 531
Query: 244 QSRLVLSNRKAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH 298
+ R+ L ++ + D + G V+ G + +GAF++I G+ GL+H+SQ+SH
Sbjct: 532 EERISLGLKQILPDPWEEFLDNYNEGEVISGKITKTVDFGAFMEIESGVEGLIHISQLSH 591
Query: 299 DRVADIATVLQPGDTLK 315
VA+ V+ GD ++
Sbjct: 592 RHVANTEEVVTAGDEVE 608
>gi|313893418|ref|ZP_07826990.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 158 str. F0412]
gi|313442059|gb|EFR60479.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella sp.
oral taxon 158 str. F0412]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVINGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|269797892|ref|YP_003311792.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
DSM 2008]
gi|269094521|gb|ACZ24512.1| hydroxymethylbutenyl pyrophosphate reductase [Veillonella parvula
DSM 2008]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVINGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|282848928|ref|ZP_06258318.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ATCC 17745]
gi|282581433|gb|EFB86826.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ATCC 17745]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVINGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|294791775|ref|ZP_06756923.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
gi|294457005|gb|EFG25367.1| penicillin tolerance protein LytB [Veillonella sp. 6_1_27]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVIKGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|239624552|ref|ZP_04667583.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239520938|gb|EEQ60804.1| RNA binding S1 domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 258
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 89/152 (58%), Gaps = 11/152 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPL 235
W + Q+ + VVK K+ A KGGVV +E +R F+P SQ+S++ E+ GK +
Sbjct: 58 WAQFAQMMEDKTVVKVKISEAVKGGVVTSLEEVRAFIPASQLSTEYVEKLEDWQGKYVEC 117
Query: 236 KFVEVDEEQSRLVLSNR-----KAMADSQ---AQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
+ VD E+ RLVLS R K A+ Q AQ G VV GTV S+KPYGAFI + G
Sbjct: 118 VIITVDPEKKRLVLSGREVERGKKEAEKQARMAQFKAGDVVEGTVDSIKPYGAFIKLDEG 177
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++GLLH+SQIS R+ VL G T+KV +
Sbjct: 178 VDGLLHISQISTQRIKHPGAVLTEGQTVKVKI 209
>gi|261417937|ref|YP_003251619.1| 30S ribosomal protein S1 [Geobacillus sp. Y412MC61]
gi|319767251|ref|YP_004132752.1| RNA binding S1 domain-containing protein [Geobacillus sp. Y412MC52]
gi|261374394|gb|ACX77137.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC61]
gi|317112117|gb|ADU94609.1| RNA binding S1 domain protein [Geobacillus sp. Y412MC52]
Length = 387
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 132/237 (55%), Gaps = 23/237 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEA---GIVPGLKEEF 153
E+G V+G V +++ LV++ +K S +P E I+ +A G K +
Sbjct: 13 EVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAVGDEVTAKVKK 72
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQL----QSEDVVVKGKVVGANKGGVVAEVEG 209
V G++ + L+LS R + E AWE + ++ + V+K V KGG+VA+V G
Sbjct: 73 VEEGKDGEEGLLILSKRAVDAERAWEDLERKFANGETFETVIKDIV----KGGLVADV-G 127
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+RGF+P S + + + GK L +K VE+D E++R++LS+R + + QA+
Sbjct: 128 VRGFIPASLVEPHYVEDFSDYKGKTLSVKVVELDREKNRVILSHRAVVEEEQARQQKELL 187
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA + V++ GD +KV
Sbjct: 188 SRLEPGQVLDGVVRRIADFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKV 244
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A E++ G + +K + VD E RL LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAVDPENGRLSLSIKEALPG 266
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
L G VV GTV+ L +GAF+++ G+ GL+HVSQI++ R+ VL+ GD
Sbjct: 267 PWEGLSEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326
Query: 313 TLK 315
+K
Sbjct: 327 VVK 329
>gi|416999072|ref|ZP_11939741.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ACS-068-V-Sch12]
gi|333977225|gb|EGL78084.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Veillonella
parvula ACS-068-V-Sch12]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVINGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|320162442|ref|YP_004175667.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
gi|319996296|dbj|BAJ65067.1| putative 30S ribosomal protein S1 [Anaerolinea thermophila UNI-1]
Length = 408
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 101/182 (55%), Gaps = 20/182 (10%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++ +++ ++VLS + E W++ Q++ V K+ G NKGG++ V GLRGFV
Sbjct: 96 VVRPEDSNGNIVLSYMKAREESDWQKAEQMRETKEVYHSKITGYNKGGLIVPVHGLRGFV 155
Query: 215 PFSQISSKSTA------------EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--- 259
P SQIS A +++G+++ + +EVD E+ RL+LS R A +++
Sbjct: 156 PASQISLSRRASMGSGESPEQRWSKMVGEEIDVCVIEVDRERRRLILSERVATPETRETL 215
Query: 260 -----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G + G V SL +GAF++I G +GL+H+S+IS DR+ + VLQ G +
Sbjct: 216 KERVIETLAEGEIRTGRVTSLADFGAFVNISGADGLVHLSEISWDRIKHPSEVLQVGQEV 275
Query: 315 KV 316
KV
Sbjct: 276 KV 277
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 76/150 (50%), Gaps = 11/150 (7%)
Query: 179 ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLP 234
ER + +E + G+V G + G G V S+IS K +E L +G+++
Sbjct: 217 ERVIETLAEGEIRTGRVTSLADFGAFVNISGADGLVHLSEISWDRIKHPSEVLQVGQEVK 276
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIG-GING 289
+K + VD E+ R+ LS R+ D A+ +G +V G + L +GAF + I G
Sbjct: 277 VKVISVDREKRRIGLSIRQTQGDPWLERAAKYQVGMLVEGVITRLTKFGAFAKLDEDIEG 336
Query: 290 LLHVSQISHDRVADIATVLQPGD--TLKVC 317
L+H+S+IS R+ VL+ GD TL++
Sbjct: 337 LIHISEISEKRIEHPKEVLKEGDKVTLRIV 366
>gi|433444810|ref|ZP_20409552.1| 30S ribosomal protein S1-like protein [Anoxybacillus flavithermus
TNO-09.006]
gi|432001350|gb|ELK22228.1| 30S ribosomal protein S1-like protein [Anoxybacillus flavithermus
TNO-09.006]
Length = 378
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/235 (33%), Positives = 132/235 (56%), Gaps = 25/235 (10%)
Query: 98 ELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ LVD+ +K +P E H+E+A V + + +
Sbjct: 13 EVGDTVKGQVTKVEDKQVLVDVEGSKLVGIIPISELSSL---HIEKASDVLSVGDAVIAK 69
Query: 157 GENEADDSLVLSLRMIQYELAWERC-RQLQSED---VVVKGKVVGANKGGVVAEVEGLRG 212
+ D++L+LS + E AWE R+L + D VVVK V KGG+VA+V G+R
Sbjct: 70 VKKVEDEALILSKKAADAEKAWEELERKLANGDTFNVVVKDIV----KGGLVADV-GVRA 124
Query: 213 FVPFSQISSKSTAEELL---GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-------- 261
F+P S + K E+ G+ L +K +E+D E++R+VLS+R + + ++
Sbjct: 125 FIPASLVE-KDFVEDFTDYKGRTLAVKVIELDREKNRVVLSHRAVIEEEESSKKKAALQS 183
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +G V+ GTV + +G F++IG ++GL+H+SQ++H RV + V++ GD +KV
Sbjct: 184 LQVGQVLEGTVARITNFGVFVNIGDVDGLVHISQLAHTRVDHPSDVVKEGDVVKV 238
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 89/167 (53%), Gaps = 18/167 (10%)
Query: 165 LVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS- 220
+VLS R +I+ E + ++ LQS V V++G V GV + + G V SQ++
Sbjct: 161 VVLSHRAVIEEEESSKKKAALQSLQVGQVLEGTVARITNFGVFVNIGDVDGLVHISQLAH 220
Query: 221 ------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
S E G + +K + +DEE R+ LS + A+ D + ++ G V+ G
Sbjct: 221 TRVDHPSDVVKE---GDVVKVKVLAIDEESGRVSLSMKAALPAPWDDIEQKIKEGDVLEG 277
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
TV+ L P+GAF+++ G+ GL+H+SQIS + VL+ GD +KV
Sbjct: 278 TVKRLAPFGAFVEVLPGVEGLVHISQISTKHIGTPHEVLKEGDVVKV 324
>gi|56420760|ref|YP_148078.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
gi|448238518|ref|YP_007402576.1| 30S ribosomal protein [Geobacillus sp. GHH01]
gi|56380602|dbj|BAD76510.1| 30S ribosomal protein S1 [Geobacillus kaustophilus HTA426]
gi|445207360|gb|AGE22825.1| 30S ribosomal protein [Geobacillus sp. GHH01]
Length = 387
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 23/237 (9%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPG---LKEEF 153
E+G V+G V +++ LV++ +K S +P E I+ +A V K +
Sbjct: 13 EVGDIVRGKVVKLEDKQVLVEVENSKQSGIIPISELSNLHIEKPSDAVAVGDEVTAKVKK 72
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERC-RQLQSEDV---VVKGKVVGANKGGVVAEVEG 209
V G++ + L+LS R + E AWE R+ S + V+K V KGG+VA+V G
Sbjct: 73 VEEGKDGEEGLLILSKRAVDAERAWEDLERKFASGETFETVIKDIV----KGGLVADV-G 127
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
+RGF+P S + + + GK L +K VE+D E++R++LS+R + + QA+
Sbjct: 128 VRGFIPASLVEPHYVEDFSDYKGKTLAVKVVELDREKNRVILSHRAVVEEEQARQQKELL 187
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L G V+ G V+ + +G F+D+GG +GL+H+SQ+SH RVA + V++ GD +KV
Sbjct: 188 SRLEPGQVLDGVVRRIADFGVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKV 244
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 70/123 (56%), Gaps = 9/123 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
GV +V G G V SQ+S A E++ G + +K + VD EQ RL LS ++A+
Sbjct: 207 GVFVDVGGFDGLVHISQLSHTRVAHPSEVVKEGDAVKVKVLAVDPEQGRLSLSIKEALPG 266
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGD 312
LG G VV GTV+ L +GAF+++ G+ GL+HVSQI++ R+ VL+ GD
Sbjct: 267 PWEGLGEKVKPGDVVTGTVKRLASFGAFVEVFPGVEGLVHVSQIANRRIGSPHEVLKEGD 326
Query: 313 TLK 315
+K
Sbjct: 327 VVK 329
>gi|296283442|ref|ZP_06861440.1| 30S ribosomal protein S1 [Citromicrobium bathyomarinum JL354]
Length = 566
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 123/229 (53%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV +N A++D+ KS + +E +++ +E G+ G + E +
Sbjct: 30 GRVVKGTVTAIENGMAMIDVGLKSEGRVDLREF----MRNEDEHGLEVGSEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW+R E V+G++ G KGG +++G F+P SQ+
Sbjct: 86 NADGEAMLSRDRARREAAWDRLENEFGEGKRVEGRIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ + P + +++D + +V+S R + +++A+ L G VV
Sbjct: 146 DIRPVRDVTPLMDQPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELISDLAEGQVVD 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V++ G T+ V +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIEIGQTVTVQI 254
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 53/210 (25%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +V+G +F G VD+ + A+LP + I ++ V P + F I+ +
Sbjct: 114 GKRVEGRIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVTPLMDQP---QPFQILKMD 169
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
++V+S R + E E+ +L S E VV G V G ++ G+ G +
Sbjct: 170 RRRGNIVVSRRAVLEETRAEQRSELISDLAEGQVVDGVVKNITDYGAFVDLGGIDGLLHV 229
Query: 217 SQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVV 268
+ +S K +G+ + ++ + ++ E R+ L ++ +D A+ +G +
Sbjct: 230 TDMSYKRVNHPSEVIEIGQTVTVQIIRINAETQRISLGMKQLESDPWDGVAAKYPVGMKL 289
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V ++ YGAF+++ GI GL+HVS++S
Sbjct: 290 TGQVTNITEYGAFVEVEPGIEGLVHVSEMS 319
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 93/214 (43%), Gaps = 24/214 (11%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V + GA VD+ L + ++ H E I G II N
Sbjct: 201 GQVVDGVVKNITDYGAFVDLGG-IDGLLHVTDMSYKRVNHPSEV-IEIGQTVTVQIIRIN 258
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ L ++ ++ + W+ + + G+V + G EVE G+ G V S+
Sbjct: 259 AETQRISLGMKQLESD-PWDGVAAKYPVGMKLTGQVTNITEYGAFVEVEPGIEGLVHVSE 317
Query: 219 ISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
+S ST++E+ + +EVD E+ R+ L ++A + + I
Sbjct: 318 MSWTKKNVHPGKIVSTSQEV-----EVMVLEVDSEKRRISLGLKQAQRNPWEEFAEAHPI 372
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
GS V G V++ +G FI + G ++G++H+S I+
Sbjct: 373 GSEVEGEVKNATEFGLFIGLPGDVDGMVHMSDIA 406
>gi|294793636|ref|ZP_06758773.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
gi|294455206|gb|EFG23578.1| penicillin tolerance protein LytB [Veillonella sp. 3_1_44]
Length = 632
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYL-------PTQEACIHKIKHVEEAGIVPGLKEE 152
G V+GTV ++ A V K+ A L P E+ +K+ +E +
Sbjct: 291 GNVVEGTVVQVEDERAYVSFGYKTEAILNRTEISYPAPESAKDVLKNGDEI--------K 342
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
VI+ + D+ + LS+ + + W+ + Q +D + K + A G+V V+ LRG
Sbjct: 343 AVIMNHIKEDNPIYLSMTRLAKDEDWQYVIEAQEKDEAIVCKGIDAIPAGLVVTVKSLRG 402
Query: 213 FVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQL 262
F+P SQ + + + L+G + K +E+DE+++RLVLS R + A++ +
Sbjct: 403 FIPLSQGDVHFVKSLDNLVGTEFEAKVLEIDEKKNRLVLSRRAVLEVERQAKLAEALKNI 462
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G G V+ + PYGAF+DIGGI GLLH+S IS ++ + VL G ++V L
Sbjct: 463 NVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVEDVLSVGQEIEVKL 518
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 30/218 (13%)
Query: 119 ITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
+T KS ++P + +H +K ++ + G + E ++ +E + LVLS R + L
Sbjct: 395 VTVKSLRGFIPLSQGDVHFVKSLDN---LVGTEFEAKVLEIDEKKNRLVLSRRAV---LE 448
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVV---------AEVEGLRGFVPFSQISSKST--AE 226
ER +L +K VG N G+V ++ G+ G + S IS + E
Sbjct: 449 VERQAKLAE---ALKNINVGENYKGIVRKIMPYGAFVDIGGIEGLLHISDISWQKIKKVE 505
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYG 279
++L G+++ +K D E ++L LS KA++ S + L +G V+ G V L YG
Sbjct: 506 DVLSVGQEIEVKLQSFDAESNKLSLS-LKALSKSPWDVAEETLHVGDVIKGKVVRLVAYG 564
Query: 280 AFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKV 316
AF+ + I GLLH+SQI+ R A + L G ++V
Sbjct: 565 AFVAVNDDIQGLLHISQITKQRNAKVEDYLNRGQEVEV 602
>gi|108804846|ref|YP_644783.1| 30S ribosomal protein S1 [Rubrobacter xylanophilus DSM 9941]
gi|108766089|gb|ABG04971.1| SSU ribosomal protein S1P [Rubrobacter xylanophilus DSM 9941]
Length = 411
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 116/218 (53%), Gaps = 14/218 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF G V+G V D LVDI KS +P E I K ++ + G + E
Sbjct: 35 DFQD--GDIVEGEVVRIDKDEVLVDIGYKSEGLIPANELTIRKGADPKDV-VELGQRIEA 91
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + +AD L+LS + +E AW + + E V+G V+ KGG++ ++ GLRGF
Sbjct: 92 LVLQKEDADGRLILSAKRAAFERAWNKIEEAYREQRNVEGPVIEVVKGGLILDI-GLRGF 150
Query: 214 VPFS--QISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLG 263
+P S I EE LG+ L K +E++ ++ +VLS R + + + L
Sbjct: 151 LPASLVDIRRVRNLEEYLGRRLECKVIELNRSRNNVVLSRRAVLEEERKEERERILNSLN 210
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 301
G +V GTV +L +GAF+D+ GI+GL+H+S++S + V
Sbjct: 211 EGDIVKGTVSNLVDFGAFVDLDGIDGLIHISELSWNHV 248
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/239 (24%), Positives = 116/239 (48%), Gaps = 17/239 (7%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F A K + V+G V G ++DI + +LP I +++++EE
Sbjct: 112 FERAWNKIEEAYREQRNVEGPVIEVVKGGLILDIGLR--GFLPASLVDIRRVRNLEE--- 166
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGG 202
G + E +I N + +++VLS R + E E ++ + E +VKG V G
Sbjct: 167 YLGRRLECKVIELNRSRNNVVLSRRAVLEEERKEERERILNSLNEGDIVKGTVSNLVDFG 226
Query: 203 VVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
+++G+ G + S++S + +G+++ +K +EVD E+ R+ L ++ D
Sbjct: 227 AFVDLDGIDGLIHISELSWNHVDHPSEVVQVGEEVEVKVLEVDRERERISLGLKQTRKDP 286
Query: 259 QAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
++ +G V+ G V L +GAF+++ G+ GL+H+S+++ V +++ GD
Sbjct: 287 WQEVVERVNVGDVIHGRVTKLVSFGAFVEVAEGVEGLIHISELAEHHVETPDEIVRSGD 345
>gi|390453457|ref|ZP_10238985.1| 30S ribosomal protein S1 [Paenibacillus peoriae KCTC 3763]
Length = 408
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 13/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A++ I K +P +E + + EEA + G + E II +
Sbjct: 28 GDTVKGTIVKLEDNQAVLSIGYKYDGVIPIRELS-SGLDNAEEA-VQVGQEVEARIISID 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+A + LVLS R I E AWE+ QL V + V KGG+V +V G+RGF+P S +
Sbjct: 86 DAKEKLVLSKRAIDSENAWEKLEQLFGSKEVFEVVVNDVVKGGIVVDV-GVRGFIPASMV 144
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVVI 269
+ + G+ L + E+D E ++++LS + + A+ Q A+L G ++
Sbjct: 145 ERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKDVLEAEFEANKQKVMAELKEGQEIV 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + + GD +KV
Sbjct: 205 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKV 251
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 202 GVVAEVEGLRGFVPFSQIS-------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V S+I+ S + +E G + +K ++VD E+ ++ LS + A
Sbjct: 214 GAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSE---GDQVKVKVLKVDPEKGKISLSMKAA 270
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+ Q +V G V+ L +GAF++I G+ GL+H+SQISH + VL+
Sbjct: 271 QPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLE 330
Query: 310 PGDTLKVCL 318
G +KV +
Sbjct: 331 EGQEVKVKI 339
>gi|340359951|ref|ZP_08682422.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339883718|gb|EGQ73550.1| 30S ribosomal protein S1 [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 484
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/228 (30%), Positives = 126/228 (55%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E + G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSV--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERVKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G +
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTSFLQTLQKGQIR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V S+ +GAF+D+GG++GL+HVS++S + + V++ G + V
Sbjct: 213 TGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTV 260
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ + LQ + G V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAYLEQTQSEVRTSFLQTLQKGQIRT-GVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG VV G
Sbjct: 240 LSWKHIDHPSEVVEVGQEVTVEVLDVDFDRERVSLSLKATQEDPWQAFARTHAIGQVVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 300 KVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|423332744|ref|ZP_17310526.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
gi|337727862|emb|CCC02950.1| 30S ribosomal protein S1 [Lactobacillus reuteri ATCC 53608]
Length = 416
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/234 (33%), Positives = 128/234 (54%), Gaps = 17/234 (7%)
Query: 98 ELGTKVKGTVFC-TDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
++G VKG V D+R A+V I A +P +E ++ + +A V G + + V+
Sbjct: 22 KVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKV-GDELDLVV 80
Query: 156 I---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I G ++ + S +LS R ++ W+ ++ E + KV A KGG+V + G+RG
Sbjct: 81 ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAKVTQAVKGGLVVDA-GVRG 139
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR--------KAMADSQAQL 262
FVP S I+ + + G++L K VE++ ++RL+LS++ KA A+L
Sbjct: 140 FVPASMITDHYVEDLNQFKGQELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAEL 199
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G V + +GAFID+GG++GL+HVS+IS+D V + VL G +KV
Sbjct: 200 QPGDVIEGKVARMTNFGAFIDLGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKV 253
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
+K+D + KV V +G LV + A ++P H +VE+ G +
Sbjct: 111 KKFDEGEHITAKVTQAV-----KGGLV-VDAGVRGFVPASMITDH---YVEDLNQFKGQE 161
Query: 151 EEFVIIGENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAE 206
EF I+ +++ L+LS + I Q+E A E+ +LQ DV+ +GKV G +
Sbjct: 162 LEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVI-EGKVARMTNFGAFID 220
Query: 207 VEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DS 258
+ G+ G V S+IS K + G+D+ +K + VD E+ R+ LS ++ + D
Sbjct: 221 LGGVDGLVHVSEISYDHVDKPSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPWDDI 280
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + + SV+ GTV+ L +GAF+++ G+ GL+H+SQISH +A A VL+PG ++V
Sbjct: 281 EEKAPVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQV 339
>gi|51892808|ref|YP_075499.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
gi|51856497|dbj|BAD40655.1| 30S ribosomal protein S1 [Symbiobacterium thermophilum IAM 14863]
Length = 441
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 126/228 (55%), Gaps = 12/228 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG-E 158
G V+G V + +VD+ KS +P E ++ +AG+ G + + V++ +
Sbjct: 56 GDIVRGQVVRVSDDSIMVDVGYKSEGIIPLNELSHRPLRSAHDAGLKVGDEVQVVVLSVD 115
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L +S R +LAW + V++ +V A KGG+V ++ GLR F+P SQ
Sbjct: 116 TKGEGGLRISKRRADEQLAWAEVERKFEAGEVIEAEVTEAVKGGLVVDL-GLRAFLPASQ 174
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
+ A+ + +G+ + +K +E+D + R++LS ++ + + + + G V+
Sbjct: 175 VDRGYVADLSKFVGQKIRVKIIELDPYKGRVILSRKQVLEAERTAARERFWSTVQEGDVL 234
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+S+ +GAFID+GG++GLLH+S++S+ R+ + V+ G+ +KV
Sbjct: 235 EGTVKSITDFGAFIDLGGVDGLLHISEMSYGRIKHPSQVVSEGERIKV 282
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 80/152 (52%), Gaps = 15/152 (9%)
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS-------SKSTAEELL 229
A ER E V++G V G ++ G+ G + S++S S+ +E
Sbjct: 220 ARERFWSTVQEGDVLEGTVKSITDFGAFIDLGGVDGLLHISEMSYGRIKHPSQVVSE--- 276
Query: 230 GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI- 284
G+ + +K + +D E+ ++ L ++ + D + + G++V GTV L +GAF+++
Sbjct: 277 GERIKVKVLRLDREKGKVSLGLKQVLPDPWDSVEEKYPEGAIVEGTVARLTTFGAFVELE 336
Query: 285 GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GL+H+SQ++ R+ + V+ GD +KV
Sbjct: 337 PGVDGLIHISQMADRRINNPGEVVSIGDVVKV 368
>gi|374579676|ref|ZP_09652770.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus youngiae DSM 17734]
gi|374415758|gb|EHQ88193.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus youngiae DSM 17734]
Length = 659
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 117/227 (51%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
GT+V GTV VDI K +P E K E+ + V+ EN
Sbjct: 295 GTRVTGTVVKITREEIFVDIGWKCEGVIPINELSATKKTSPEDTVAIGDQITAVVLRVEN 354
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E + VLS R E A ER ++ ++ +VV KGG+V +V GLRGFVP SQI
Sbjct: 355 E-EGHTVLSKRKADEEGAKERLEKIAESKEEIQAEVVEVVKGGLVVDV-GLRGFVPASQI 412
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVI 269
+ + LG+ L L+ ++ D + ++VLS + + + +A L G VV
Sbjct: 413 QPGYVEDLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLETLKEGDVVS 472
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+ + +GAFIDIGGI+GLLH+S +++ R+ + +L GD ++V
Sbjct: 473 GTVRRMADFGAFIDIGGIDGLLHISDMAYTRIKHPSEILTIGDEVEV 519
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 125/257 (48%), Gaps = 27/257 (10%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R A EG LE+ A K + +E+ VKG G +VD+ + ++P +
Sbjct: 364 RKADEEGAKERLEKI--AESKEEIQAEVVEVVKG--------GLVVDVGLR--GFVPASQ 411
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI-QYELAWERCRQLQS--ED 188
+ +VE+ G +I + A +VLS ++I + E A +R + L++ E
Sbjct: 412 I---QPGYVEDLNQFLGQTLRLRMIDYDPAKRKVVLSQKVILEEERAIKRTQLLETLKEG 468
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQ 244
VV G V G ++ G+ G + S ++ K +E L +G ++ ++ ++++ +
Sbjct: 469 DVVSGTVRRMADFGAFIDIGGIDGLLHISDMAYTRIKHPSEILTIGDEVEVQVLKLEPQS 528
Query: 245 SRLVLSNRK----AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD 299
++ L ++ + +GS+V G V + +GAF+ +G G++GL+H+SQ++
Sbjct: 529 GKVSLGLKQLKESPWEQASVNFPVGSIVNGKVVRITSFGAFVGLGEGVDGLVHISQLADH 588
Query: 300 RVADIATVLQPGDTLKV 316
RV + V++ GD + V
Sbjct: 589 RVNKVEDVVKVGDMVSV 605
>gi|373470879|ref|ZP_09561966.1| S1 RNA binding domain protein [Lachnospiraceae bacterium oral taxon
082 str. F0431]
gi|371761501|gb|EHO50119.1| S1 RNA binding domain protein [Lachnospiraceae bacterium oral taxon
082 str. F0431]
Length = 232
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/150 (42%), Positives = 96/150 (64%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPL 235
WE Q+ ++ V K K+ KGG +A +E +RGF+P SQ+SS+ ++ LGK L +
Sbjct: 31 WEVFEQMLADKTVSKVKITEVVKGGCIAFLEEVRGFIPASQLSSQYVENLDDYLGKSLEV 90
Query: 236 KFVEVDEEQSRLVLSNR-----KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDIG-G 286
+ + + +LVLS+R +A + QA+L +G V+ G V S+K YGAFID+G G
Sbjct: 91 VVITAEPAKKKLVLSHRALEKEEAKKERQAKLDSVKVGDVLEGKVDSIKDYGAFIDLGDG 150
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
I+GLLHVSQIS+ RV + A VL+ G+++KV
Sbjct: 151 ISGLLHVSQISNQRVKNPAAVLKEGESIKV 180
>gi|310642586|ref|YP_003947344.1| RNA binding s1 domain-containing protein [Paenibacillus polymyxa
SC2]
gi|386041648|ref|YP_005960602.1| 30S ribosomal S1-like protein [Paenibacillus polymyxa M1]
gi|309247536|gb|ADO57103.1| RNA binding S1 domain protein [Paenibacillus polymyxa SC2]
gi|343097686|emb|CCC85895.1| 30S ribosomal S1-like protein [Paenibacillus polymyxa M1]
Length = 408
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 120/227 (52%), Gaps = 13/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A+V I K +P +E + + EEA + G + E II +
Sbjct: 28 GDTVKGTIVKLEDNQAVVSIGYKYDGVIPIRELS-SGLDNAEEA-VQVGQEVEARIISID 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R I E AWE+ QL V + V KGG+V +V GLRGF+P S +
Sbjct: 86 DGKEKLVLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GLRGFIPASMV 144
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ + G+ L + E+D E ++++LS + + A+L G ++
Sbjct: 145 ERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIV 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + + GD +KV
Sbjct: 205 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKV 251
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 202 GVVAEVEGLRGFVPFSQIS-------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V S+I+ S + +E G + +K ++VD E+ ++ LS + A
Sbjct: 214 GAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSE---GDQVKVKVLKVDPEKGKISLSMKAA 270
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+ Q +V G V+ L +GAF++I G+ GL+H+SQISH + VL+
Sbjct: 271 QPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLE 330
Query: 310 PGDTLKVCL 318
G +KV +
Sbjct: 331 EGQEVKVKI 339
>gi|253576395|ref|ZP_04853725.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844288|gb|EES72306.1| RNA binding S1 domain-containing protein [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 411
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 12/223 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V I K +P +E + + +A + G + E ++ +
Sbjct: 29 GDTVKGTIVKIEDNQAYVSIGYKYDGVIPIRELSSVHLDNAADA-VQVGQEVETKVVSID 87
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R I E AWE + V + V KGG+VA+V G+RGF+P S +
Sbjct: 88 DEKERLVLSKRAIDSENAWEELGKKFQNGEVFEVTVADVVKGGIVADV-GVRGFIPASMV 146
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIGSVVI 269
+ + G+ L +K E+D E ++++LS + + A+ Q A+L G V+
Sbjct: 147 ERHFVEDFSDYKGRTLRVKVKELDRENNKVILSQKDVLDEEFEANKQKVMAELKEGQVLE 206
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
GTVQ L +GAF+D+GG++GL+HVS+I+ + V A VL GD
Sbjct: 207 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWNHVDKPADVLSEGD 249
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQS 245
V++G V + G +V G+ G V S+I+ + ++L G + +K ++VD E+
Sbjct: 204 VLEGTVQRLTQFGAFVDVGGVDGLVHVSEIAWNHVDKPADVLSEGDKVKVKVLKVDPEKG 263
Query: 246 RLVLSNRKAMA---DSQAQ-LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
++ LS + A D+ A+ G +V G V+ L +GAF++I G+ GL+H+SQISH
Sbjct: 264 KISLSIKAAQPGPWDTAAEKFHTGDIVTGEVKRLVNFGAFVEIAPGVEGLVHISQISHKH 323
Query: 301 VADIATVLQPGDTLKV 316
+ VL+ G T++V
Sbjct: 324 IGTPHEVLKEGQTVQV 339
>gi|302336104|ref|YP_003801311.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
gi|301319944|gb|ADK68431.1| SSU ribosomal protein S1P [Olsenella uli DSM 7084]
Length = 392
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 136/243 (55%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +S ++ + + G V GTV ++ L+DI KS +P++E I K + EE
Sbjct: 18 EEMNSLIDGTITDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDVNPEEV 77
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G E +++ + + + L+LS + +YE AW R + + V+G+V+ KGG+
Sbjct: 78 -VALGDTIEALVLQKEDKEGRLILSKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + +G + + +E+D ++ +VLS R + +++
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDLNAYMGTRIEARVIEMDRNRNNVVLSRRVVLEEARKA 195
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
++L G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 196 ERSEILSKLQPGMRLKGTVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQE 255
Query: 314 LKV 316
++V
Sbjct: 256 VEV 258
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 119/249 (47%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRVEEKFNAGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLN 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G + E +I + +++VLS R++ E R+ + +++ +KG V
Sbjct: 161 AYMGTRIEARVIEMDRNRNNVVLSRRVV-----LEEARKAERSEILSKLQPGMRLKGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V G+V L +GAF+D+G G+ GL+H+S+++ V A V
Sbjct: 276 QTTEDPWRTLVKKYPVGAIVEGSVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVDAPAQV 335
Query: 308 LQPGDTLKV 316
GDT++V
Sbjct: 336 CAVGDTVQV 344
>gi|319651364|ref|ZP_08005493.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
gi|317396895|gb|EFV77604.1| 30S ribosomal protein S1 [Bacillus sp. 2_A_57_CT2]
Length = 379
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 15/232 (6%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
N E+G KVKG V + + +VD+ +K +P E H+E+A +E
Sbjct: 12 NFEVGDKVKGQVTKVEEKQVIVDLADSKLDGIIPISELSSL---HIEKASDAVSEGDELE 68
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+ +++L+LS R + +WE + ++ V + ++ KGG+V ++ G+RGFV
Sbjct: 69 LEVLKVEEEALILSKRKVDAGKSWETLEKKFNDGEVFEAEIKDVVKGGLVVDL-GVRGFV 127
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S + + + + GK + K VE+D++++RL+LS+R + + + + L
Sbjct: 128 PASLVEAHFVEDFTDYKGKTMTFKIVELDKDKNRLILSHRAVIEEEKGKQKHQVLESLQA 187
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ + +GAF+DIGGI+GL+H+SQ+S++ V + V++ G +KV
Sbjct: 188 GQVLDGTVQRITDFGAFVDIGGIDGLVHISQLSYEHVEKPSDVVEEGQKVKV 239
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/236 (27%), Positives = 113/236 (47%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VD+ + ++P A + + VE+ G F
Sbjct: 105 FEAEIKDVVKG--------GLVVDLGVR--GFVP---ASLVEAHFVEDFTDYKGKTMTFK 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
I+ ++ + L+LS R +I+ E ++ + L+S V+ G V G ++ G+
Sbjct: 152 IVELDKDKNRLILSHRAVIEEEKGKQKHQVLESLQAGQVLDGTVQRITDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S + EE G+ + +K + VD + R+ LS ++ + +
Sbjct: 212 GLVHISQLSYEHVEKPSDVVEE--GQKVKVKVLSVDRDNERISLSIKETLPGPWDNISEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GS + GTV+ L YGAF+++ G+ GL+H+SQI+H + VL G +KV
Sbjct: 270 APKGSTLEGTVKRLVSYGAFVEVFPGVEGLVHISQIAHKHIGTPHEVLSEGQEIKV 325
>gi|357235302|ref|ZP_09122645.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
gi|356883284|gb|EHI73484.1| 30S ribosomal protein S1 [Streptococcus criceti HS-6]
Length = 398
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S + ++ E+ +G+D+ K EVD ++R +LS R+ + + A +L +
Sbjct: 134 PASMLDTRFVRNTEQFVGQDIEAKIKEVDPAENRFILSRREVVEEKNAAARQEIFSKLEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV G V L +GAF+D+GG++GL+HV+++SH+R +V+ GD + V
Sbjct: 194 GSVVKGKVARLTSFGAFVDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIDV 245
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQS 245
VVKGKV G ++ G+ G V +++S + +G ++ +K + +DEE
Sbjct: 196 VVKGKVARLTSFGAFVDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIDVKVLAIDEEAG 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + +L G V+ G V+ L +GAF+++ GI+GL+H+SQISH R
Sbjct: 256 RISLSLKATTPGPWDGVEQKLAAGDVIDGKVKRLTDFGAFVEVLPGIDGLVHISQISHKR 315
Query: 301 VADIATVLQPGDTLKV 316
V + VL G ++V
Sbjct: 316 VENPKDVLSVGQEVQV 331
>gi|420153154|ref|ZP_14660147.1| 30S ribosomal protein S1 [Actinomyces massiliensis F0489]
gi|394761582|gb|EJF43930.1| 30S ribosomal protein S1 [Actinomyces massiliensis F0489]
Length = 484
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/209 (33%), Positives = 118/209 (56%), Gaps = 14/209 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEEAGIVPGLKEEFVIIGE 158
G V+GTV D L+DI K+ + +E I H + E I G + E +++ +
Sbjct: 36 GDIVEGTVVKVDRDEVLLDIGYKTEGVILARELSIKHDVDPDEIVSI--GDEIEALVLQK 93
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ GLRGF+P S
Sbjct: 94 EDKEGRLLLSKKRAQYERAWGTIERVKEEDGVVTGSVIEVVKGGLILDI-GLRGFLPASL 152
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVV 268
+ + + +G++L K +E+D+ ++ +VLS R + +Q++ L G V
Sbjct: 153 VEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRAYLEQTQSEVRTNFLQTLQKGQVR 212
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
G V S+ +GAF+D+GG++GL+HVS++S
Sbjct: 213 TGVVSSIVNFGAFVDLGGVDGLVHVSELS 241
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 31/233 (13%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G+V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VTGSVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRELEAKIIELDKNR 180
Query: 163 DSLVLSLRMIQYELAWE-RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
+++VLS R + E R LQ+ + KG+V + GVV+ + FV +
Sbjct: 181 NNVVLSRRAYLEQTQSEVRTNFLQT---LQKGQV----RTGVVSSIVNFGAFVDLGGVDG 233
Query: 222 KSTAEELLGK--DLP-----------LKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
EL K D P ++ ++VD ++ R+ LS + D I
Sbjct: 234 LVHVSELSWKHIDHPSEVVEVGTEVTVEVLDVDFDRERVSLSLKATQEDPWQAFARTHAI 293
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V L P+GAF+ + GI GL+H+S+++ V V + GD + V
Sbjct: 294 GQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELAQRHVEVPEQVAKVGDEVFV 346
>gi|297181780|gb|ADI17960.1| ribosomal protein s1 [uncultured Chloroflexi bacterium
HF0200_09I09]
Length = 677
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 124/238 (52%), Gaps = 22/238 (9%)
Query: 100 GTKVKGTVFCTDNRGALVD---ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
G ++G++ + G LVD I +KS +PT E +H + + G +E V +
Sbjct: 102 GEVIEGSIMAIERDGVLVDLVDIGSKSEGVVPTHE--MHSLGSDALTKLQMG-EEVLVYV 158
Query: 157 GENEADDSLVL-SLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ E D+ VL S+ + E W + + + ++ G NKGG++A VEG+ F+P
Sbjct: 159 MQAETDEGQVLLSIDRARGEQGWRILQDRFENGEIFEAEITGFNKGGLLANVEGVNAFIP 218
Query: 216 FSQI-------SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------- 261
SQ+ + + +G++L +K +E++ ++R +LS R AM + +A+
Sbjct: 219 MSQVVGAKPGTDGAQSLSDQVGRELRMKVIEINRRRNRAILSERAAMQEWRAEQKERLLG 278
Query: 262 -LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L G V GTV S++ +G F+D+GG +GL H+S++S DR AD + Q G + V +
Sbjct: 279 ELAEGEVRKGTVTSIRNFGVFVDLGGADGLAHLSELSWDRNADPEQLFQVGQDIDVYI 336
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 79/165 (47%), Gaps = 12/165 (7%)
Query: 166 VLSLRMIQYELAWERCRQLQ---SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
+LS R E E+ +L +E V KG V GV ++ G G S++S
Sbjct: 258 ILSERAAMQEWRAEQKERLLGELAEGEVRKGTVTSIRNFGVFVDLGGADGLAHLSELSWD 317
Query: 223 STA--EEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQS 274
A E+L +G+D+ + + +D + ++ LS R+A D +Q +G VV G V
Sbjct: 318 RNADPEQLFQVGQDIDVYIMRIDRDSKKIALSVRRAAPEQWQDLISQYEVGDVVPGIVTK 377
Query: 275 LKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ +GAF + G + GL HVS++ R+ +L GD + + +
Sbjct: 378 VVAFGAFTRLPGPVEGLAHVSELVDRRINSPEEILIEGDVVPLKI 422
>gi|331697654|ref|YP_004333893.1| RNA binding S1 domain-containing protein [Pseudonocardia
dioxanivorans CB1190]
gi|326952343|gb|AEA26040.1| RNA binding S1 domain protein [Pseudonocardia dioxanivorans CB1190]
Length = 487
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 136/248 (54%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 23 EDFLAAIDQTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDS-LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V + ++ + E + L+LS + QYE AW L+ D V+G V+
Sbjct: 77 VDPAEVVEVGEFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRKIEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 196 QTQSEVRSEFLNQLARGQVRKGVVSSVVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 255
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 256 EVGQEVTV 263
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 129 VEGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRKIEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QL + V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRSEFLNQL-ARGQVRKGVVSSVVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRLYARTHAIGQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+Q GD V
Sbjct: 303 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEIPEQVVQVGDDAMV 349
>gi|312864811|ref|ZP_07725042.1| putative ribosomal protein S1 [Streptococcus downei F0415]
gi|311099938|gb|EFQ58151.1| putative ribosomal protein S1 [Streptococcus downei F0415]
Length = 400
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S + ++ E+ +G+D+ K E+D ++R +LS R+ + + A +L +
Sbjct: 134 PASMLDTRFVRNTEQFVGQDIEAKIKEIDPAENRFILSRREVVEEKNAAARQEIFSKLEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GS+V G V L +GAF+D+GG++GL+HV+++SH+R +V+ GD + V
Sbjct: 194 GSIVTGKVARLTSFGAFVDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIDV 245
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 73/136 (53%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQS 245
+V GKV G ++ G+ G V +++S + +G ++ +K + +DEE
Sbjct: 196 IVTGKVARLTSFGAFVDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIDVKVLAIDEEAG 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + +L G V+ GTV+ L +GAF+++ GI+GL+H+SQISH R
Sbjct: 256 RISLSLKATTPGPWDGVEQKLAAGDVIDGTVKRLTDFGAFVEVLPGIDGLVHISQISHKR 315
Query: 301 VADIATVLQPGDTLKV 316
V + VL G ++V
Sbjct: 316 VENPKDVLSVGQEVQV 331
>gi|315652689|ref|ZP_07905664.1| conserved hypothetical protein [Lachnoanaerobaculum saburreum DSM
3986]
gi|419718836|ref|ZP_14246140.1| putative 30S ribosomal protein S1 [Lachnoanaerobaculum saburreum
F0468]
gi|315485067|gb|EFU75474.1| conserved hypothetical protein [Lachnoanaerobaculum saburreum DSM
3986]
gi|383305005|gb|EIC96386.1| putative 30S ribosomal protein S1 [Lachnoanaerobaculum saburreum
F0468]
Length = 232
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 11/153 (7%)
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKD 232
E WE ++ +E V K K+ KGG +A +E +RGF+P SQ+SS+ +E LGK
Sbjct: 28 ENKWEVFEKMLAEKTVSKVKITEVVKGGCIAFLEEVRGFIPASQLSSQYVENLDEYLGKS 87
Query: 233 LPLKFVEVDEEQSRLVLSNR-----KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDI 284
L + + + + +LVLS+R +A + QA+ +G V+ G V S+K YGAFID+
Sbjct: 88 LEVIVITAEPAKKKLVLSHRAIEKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDL 147
Query: 285 G-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G GI+GLLHVSQIS+ RV + A VL+ G+++KV
Sbjct: 148 GDGISGLLHVSQISNQRVKNPAAVLKEGESVKV 180
>gi|332653049|ref|ZP_08418794.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
bacterium D16]
gi|332518195|gb|EGJ47798.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Ruminococcaceae
bacterium D16]
Length = 648
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 119/241 (49%), Gaps = 11/241 (4%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F LE+ G KV GTV VD+ K + Y+P E VE+
Sbjct: 290 FAELLEESIKTLNTGDKVTGTVVAITPTEIQVDLGTKHAGYIPVSELTDDPTAKVEDLVK 349
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
V E FV+ N+ + + LS + + WE + + V++G V NKGGVV
Sbjct: 350 VGDEIETFVV-RVNDQEGVVTLSKKRLDVVKGWEEIETARENETVLEGVVTEDNKGGVVV 408
Query: 206 EVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----- 258
V+G+R FVP SQ + ++ LL + + L EV+ + R+V S + +
Sbjct: 409 SVKGIRVFVPASQTGLPRETPMSTLLKQKVRLVITEVNRARRRVVGSISRVLRAERAAAA 468
Query: 259 ---QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
A++ G GTV+SL YGAF+DIGG++G++H+S++S R+ + V++ GDT+
Sbjct: 469 EKVWAEIEDGKRYTGTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVKVGDTVD 528
Query: 316 V 316
V
Sbjct: 529 V 529
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S++S K +E + +G + + + D E+ ++
Sbjct: 483 GTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVKVGDTVDVYVISADPEKKKIS 542
Query: 249 LSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVAD 303
L + D + +G V + L +GAF +I G++GL+H+SQI+ R+
Sbjct: 543 LGMKDHSQDPWTVFTSTYQVGDVANVRIVKLMTFGAFAEIVPGVDGLIHISQIADHRIEK 602
Query: 304 IATVLQPGDTLKV 316
VL GD + V
Sbjct: 603 PGDVLAEGDKVDV 615
>gi|254464531|ref|ZP_05077942.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
gi|206685439|gb|EDZ45921.1| ribosomal protein S1 [Rhodobacterales bacterium Y4I]
Length = 559
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 129/247 (52%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ + G+ VKG V + A++D+ K + +E
Sbjct: 6 SMEEFEALLNESFEMDTPDEGSVVKGKVLAIEAGQAIIDVGYKMEGRVDLKEFA----NP 61
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E A I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 62 GEAADIAVGDEVEVFLRSAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 121
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 122 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 181
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 182 SRAEQRAEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILS 241
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 242 IGETVKV 248
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 97 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 149
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ SE V G V +
Sbjct: 150 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQAVDGVVKNITE 209
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ ++++++ R+ L ++
Sbjct: 210 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQE 269
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D +G + SV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 270 DPWDLVGAKYPLNSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMS 315
>gi|121551159|gb|ABM55769.1| RpsA [Pasteuria ramosa]
Length = 392
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 20/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFV-- 154
E+G+ V G+V D AL+ I A LP E +C+ + E G + L +E
Sbjct: 12 EIGSLVTGSVTKIDKNQALIKIAEDIEAILPISELSCLR----INEVGDMLKLDDELELE 67
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++ +E ++ +LS R + + AW + + ++ KV KGG+V ++ G+RGFV
Sbjct: 68 VLRLDEEENKFILSKRAVDAKKAWPFLQHKYENNENIEAKVSDVVKGGLVIDL-GVRGFV 126
Query: 215 PFSQISSKSTAEELLGKD--LPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S + + KD + +K E+D++ ++L+LS R A+ + AQ +
Sbjct: 127 PASLVECHYVEDFSDYKDRVITMKIAEIDQDSNKLILSCR-AVHEEAAQHQREATFNNIE 185
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
IGSVV G V+ L +GAF+D+G ++GL+H+SQIS RV + VL GD +K
Sbjct: 186 IGSVVDGIVRRLTDFGAFVDVGAVDGLVHISQISWQRVNHPSDVLNIGDEVK 237
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 106/241 (43%), Gaps = 29/241 (12%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY+ N + KV V +G LV I ++P H ++ + K+
Sbjct: 97 KYENNENIEAKVSDVV-----KGGLV-IDLGVRGFVPASLVECHYVEDFSD------YKD 144
Query: 152 EFVIIGENEAD---DSLVLSLRMIQYELAWERCRQLQSEDV----VVKGKVVGANKGGVV 204
+ + E D + L+LS R + E A + R+ ++ VV G V G
Sbjct: 145 RVITMKIAEIDQDSNKLILSCRAVHEEAA-QHQREATFNNIEIGSVVDGIVRRLTDFGAF 203
Query: 205 AEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKA----MA 256
+V + G V SQIS + +G ++ K ++ D E R+ LS R +
Sbjct: 204 VDVGAVDGLVHISQISWQRVNHPSDVLNIGDEVKCKVLKFDRESGRISLSIRDTQPGPWS 263
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ QL +V G V+ L +GAF++I G+ GL+H+S+ISH + + +L+ G +
Sbjct: 264 GVEDQLVENDIVKGVVKRLVSFGAFVEILPGVEGLMHISEISHRHIVTPSEILKEGQEIL 323
Query: 316 V 316
V
Sbjct: 324 V 324
>gi|559914|emb|CAA86365.1| 30S ribosomal protein S1 [Mycobacterium leprae]
Length = 482
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 131/244 (53%), Gaps = 14/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKHVEE 142
E+F +A++K G V+GT+ D L+DI K+ +P +E I H + E
Sbjct: 20 EDFLAAIDKTIKYFNDGDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDPNEV 79
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
+ G + E +++ + + + L+LS + QYE AW L+ +D VKG V+ KGG
Sbjct: 80 VSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVVKGG 137
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R + +Q+
Sbjct: 138 LILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQS 196
Query: 261 --------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
QL G++ G V S+ +G GG++GL+HVS++S + + V+Q G+
Sbjct: 197 EVRSEFLNQLQKGAIRKGVVSSIVNFGCVCRSGGVDGLVHVSELSWKHIDHPSEVVQVGN 256
Query: 313 TLKV 316
+ V
Sbjct: 257 EVTV 260
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGIVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLSLR----MIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS R Q E+ E QLQ + + KG V G V G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGCVCRSGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
>gi|374993841|ref|YP_004969340.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus orientis DSM 765]
gi|357212207|gb|AET66825.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus orientis DSM 765]
Length = 662
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 95/305 (31%), Positives = 147/305 (48%), Gaps = 27/305 (8%)
Query: 36 NSRKNKTIVSAVAISN-AETREREELNQLFEEAYERCRTAPMEGVSFTLEEFH---SALE 91
N+RK +I + V + ET E E F++A TA + +EE + + +
Sbjct: 218 NTRKLASICAEVTKTYLIETAEELE-ESWFKDAKNAGLTAGASTPDWIIEEVYKKMTEMN 276
Query: 92 KYDFNSE----------LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
+ + N E G KV GTV VDI K +P E + E
Sbjct: 277 EQEMNMESWVDSCPELHQGNKVTGTVVKITREEVFVDIGWKCEGVIPINELSASRKVRPE 336
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+A + VI ENE + VLS R E A ER ++ ++ +VV KG
Sbjct: 337 DAVAIGDEINAVVIRLENE-EGHTVLSKRKADEEGAKERLEKIAESKEEIQAEVVEVVKG 395
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
G+V +V GLRGFVP SQI + + LG+ L L+ ++ D + ++VLS + + + +
Sbjct: 396 GLVVDV-GLRGFVPASQIQVGYVEDLNQFLGQTLRLRMLDFDPAKRKVVLSQKVILEEER 454
Query: 260 A--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
A L G VV GTV+ + +GAFIDIGG++GLLH+S +++ R+ + +L G
Sbjct: 455 ALKRTQLLESLKDGDVVKGTVRRIADFGAFIDIGGVDGLLHISDMAYTRIKHPSDMLSVG 514
Query: 312 DTLKV 316
D ++V
Sbjct: 515 DEVEV 519
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R A EG LE+ A K + +E+ VKG G +VD+ + ++P +
Sbjct: 364 RKADEEGAKERLEKI--AESKEEIQAEVVEVVKG--------GLVVDVGLR--GFVPASQ 411
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI-QYELAWERCRQLQS--ED 188
++ +VE+ G ++ + A +VLS ++I + E A +R + L+S +
Sbjct: 412 I---QVGYVEDLNQFLGQTLRLRMLDFDPAKRKVVLSQKVILEEERALKRTQLLESLKDG 468
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQ 244
VVKG V G ++ G+ G + S ++ K ++ L +G ++ ++ ++++ +
Sbjct: 469 DVVKGTVRRIADFGAFIDIGGVDGLLHISDMAYTRIKHPSDMLSVGDEVEVQVLKIEPQS 528
Query: 245 SRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD 299
++ L ++ +Q+G +GS+V G V + +GAF+ +G G++GL+H+SQ++
Sbjct: 529 GKISLGLKQLKESPWSQVGGNYPVGSIVNGKVVRITSFGAFVTLGEGVDGLVHISQLADH 588
Query: 300 RVADIATVLQPGDTL 314
RV + V++ GD +
Sbjct: 589 RVNKVEDVVKVGDMV 603
>gi|167751224|ref|ZP_02423351.1| hypothetical protein EUBSIR_02210 [Eubacterium siraeum DSM 15702]
gi|167655731|gb|EDR99860.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
siraeum DSM 15702]
Length = 658
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/271 (27%), Positives = 135/271 (49%), Gaps = 29/271 (10%)
Query: 73 TAPMEGVSFTLEEFHSAL-------EKYDFNSE---------LGTKVKGTVFCTDNRGAL 116
TA ++ ++E H + E +DF +E +G +VK V + A+
Sbjct: 269 TAGASTPAYIIKEVHRIMSEILNNEEGFDFMAEVDKTFKKVYIGNRVKALVVAVNKNEAV 328
Query: 117 VDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQYE 175
VD+ K S Y+P E + + + + +V G + E ++ N+A+ ++ LS + +
Sbjct: 329 VDLGTKHSGYIPASE--LSQDPNAAPSDVVKVGDEIEAIVTAVNDAEGTVTLSKKKVDSV 386
Query: 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDL 233
L E+ + ++G+V KGGV+ G R F+P SQ + EELL K +
Sbjct: 387 LGVEKLAAAMENNETLEGEVSSVVKGGVIIISNGTRVFIPASQTGVPKDGKLEELLKKTV 446
Query: 234 PLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
P K +EV E + R+V S R+A ++ + +G G V+S++ YG F+D+G
Sbjct: 447 PFKVIEVTEARGRVVGSIRQAKKEANDAAKAKFWENIEVGQKFTGEVKSIESYGVFVDLG 506
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++G++H S+++ +R+ +++ GD L V
Sbjct: 507 GVDGMVHSSELTWNRIKHPREIVKIGDKLDV 537
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 21/218 (9%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEE--AGIVPGLKEEFVIIGENEADDSLVLSLR 170
+G ++ I+ + ++P + + K +EE VP F +I EA +V S+R
Sbjct: 411 KGGVIIISNGTRVFIPASQTGVPKDGKLEELLKKTVP-----FKVIEVTEARGRVVGSIR 465
Query: 171 MIQYELAWERCRQLQSEDVVVKGKVVGANKG----GVVAEVEGLRGFVPFSQISSKSTAE 226
+ E A + + E++ V K G K GV ++ G+ G V S+++
Sbjct: 466 QAKKE-ANDAAKAKFWENIEVGQKFTGEVKSIESYGVFVDLGGVDGMVHSSELTWNRIKH 524
Query: 227 EL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIGTVQSLKPY 278
+G L + D E+ R+ L +K + A+ G VV T+ S+ P+
Sbjct: 525 PREIVKIGDKLDVYVKSFDPEKKRVSLGCKKEEDNPWNKFVAEYSEGDVVDVTIVSITPF 584
Query: 279 GAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
GAF I G++GL+H+SQIS +R+ ++A VL GD +K
Sbjct: 585 GAFAQIIPGVDGLIHISQISTERINNVAQVLSIGDEVK 622
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 8/174 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E +A K+ N E+G K G V ++ G VD+ + + E ++IKH E
Sbjct: 470 EANDAAKAKFWENIEVGQKFTGEVKSIESYGVFVDLGG-VDGMVHSSELTWNRIKHPREI 528
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G K + + + + L + + + W + SE VV +V G
Sbjct: 529 -VKIGDKLDVYVKSFDPEKKRVSLGCKK-EEDNPWNKFVAEYSEGDVVDVTIVSITPFGA 586
Query: 204 VAEV-EGLRGFVPFSQISSK---STAEEL-LGKDLPLKFVEVDEEQSRLVLSNR 252
A++ G+ G + SQIS++ + A+ L +G ++ K +E++EEQ+R+ LS R
Sbjct: 587 FAQIIPGVDGLIHISQISTERINNVAQVLSIGDEVKAKIIEINEEQNRVSLSIR 640
>gi|354807565|ref|ZP_09041029.1| 30S ribosomal protein S1 [Lactobacillus curvatus CRL 705]
gi|354513955|gb|EHE85938.1| 30S ribosomal protein S1 [Lactobacillus curvatus CRL 705]
Length = 403
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 16/233 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI- 155
++G VKG V ++R +V I +P +E I+ + + V + VI
Sbjct: 26 KIGDVVKGEVLAIEDRQVIVGIEGTGVEGVVPQKELSSQPIEDIADVAKVGDQLDLVVIS 85
Query: 156 -IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IG ++ + S +LS R ++ W Q + + KV+ KGG+V + G+RGFV
Sbjct: 86 RIGNDKENGSYLLSKRRLEARKVWSEIEQKFANQETITAKVIDVVKGGLVVDA-GVRGFV 144
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI-------- 264
P S IS + + G++L L+ +E++ ++RL+LS RKA+ + + Q +
Sbjct: 145 PASMISDRFVRDLSSFKGQELTLQIIEIEPSENRLILS-RKALLEQERQAKLQAVFEKML 203
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V L +GAFID+GG++GL+HVS+IS+D + + VL+ G ++V
Sbjct: 204 PGDVVEGEVARLTNFGAFIDLGGVDGLVHVSEISYDHINQPSDVLEVGQKVQV 256
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 90/171 (52%), Gaps = 18/171 (10%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQS------EDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+++ L+LS + + L ER +LQ+ VV+G+V G ++ G+ G V
Sbjct: 175 SENRLILSRKAL---LEQERQAKLQAVFEKMLPGDVVEGEVARLTNFGAFIDLGGVDGLV 231
Query: 215 PFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGS 266
S+IS + +G+ + +K + +D+E+ R+ LS + D + +GS
Sbjct: 232 HVSEISYDHINQPSDVLEVGQKVQVKVLSLDQEKGRISLSIKDTQPGPWDDIADKAPVGS 291
Query: 267 VVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ G+ GL+H+SQISH +A VL+ G T++V
Sbjct: 292 TLEGVVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQTVQV 342
>gi|229495637|ref|ZP_04389366.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
gi|229317407|gb|EEN83311.1| 30S ribosomal protein S1 [Porphyromonas endodontalis ATCC 35406]
Length = 583
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 119/216 (55%), Gaps = 17/216 (7%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172
R LVD+ KS +P E ++ V G + E +I + + +LVLS R
Sbjct: 48 REVLVDVGYKSLGVVPYTEFRYNQDLKV-------GDEVEVYVISQEDRSGALVLSHRQA 100
Query: 173 QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKS--TAEELLG 230
+ E AWER + Q +D V+ G + KGG++ +V G+ F+P SQI + + L+
Sbjct: 101 RLERAWERINEAQEKDEVILGFIKSRTKGGMIVDVFGVEAFLPGSQIDVRPIRDYDALID 160
Query: 231 KDLPLKFVEVDEEQSRLVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYGAFI 282
K + K V++++EQ +V+S++ + D ++L G V+ GTV+++ P+G F+
Sbjct: 161 KTMEFKIVKINQEQKNVVVSHKILVEAELEQQKRDIISKLEKGQVLEGTVKNILPFGVFV 220
Query: 283 DIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
D+GG++GL+H++ +S +RV+ + V++ + V +
Sbjct: 221 DLGGVDGLIHITDLSWERVSHPSEVVELDQKINVVI 256
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 102/202 (50%), Gaps = 28/202 (13%)
Query: 114 GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MI 172
G +VD+ A+LP + + I+ + A I + EF I+ N+ ++V+S + ++
Sbjct: 130 GMIVDVFG-VEAFLPGSQIDVRPIRDYD-ALIDKTM--EFKIVKINQEQKNVVVSHKILV 185
Query: 173 QYELAWERCRQLQSEDVVVK---GKVV-GANKG----GVVAEVEGLRGFVPFSQISSK-- 222
+ EL + Q D++ K G+V+ G K GV ++ G+ G + + +S +
Sbjct: 186 EAEL------EQQKRDIISKLEKGQVLEGTVKNILPFGVFVDLGGVDGLIHITDLSWERV 239
Query: 223 STAEELLGKDLPLKFV--EVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLK 276
S E++ D + V + DE ++R+ L ++ + L G V+ G V+ +
Sbjct: 240 SHPSEVVELDQKINVVILDFDENKTRIALGLKQLTPNPWDNLDPNLKPGDVLKGKVELIT 299
Query: 277 PYGAFIDIG-GINGLLHVSQIS 297
YGAF++I GI GL+HVS++S
Sbjct: 300 DYGAFVEIAPGIEGLIHVSEMS 321
Score = 38.9 bits (89), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 64/119 (53%), Gaps = 11/119 (9%)
Query: 190 VVKGKV-VGANKGGVVAEVEGLRGFVPFSQISSKS---TAEELL--GKDLPLKFVEVDEE 243
V+KGKV + + G V G+ G + S++S +A++ L G+++ + +D E
Sbjct: 290 VLKGKVELITDYGAFVEIAPGIEGLIHVSEMSWAQHLRSAQDFLKVGEEVEAVILTLDRE 349
Query: 244 QSRLVLSNRK----AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
+ ++ L ++ AD + + +GS V++ +G F++I G++GL+H+S +S
Sbjct: 350 ERKMSLGMKQLTPDPWADIEERYPVGSRHQAKVRNFTNFGVFVEIEEGVDGLIHLSDLS 408
Score = 37.7 bits (86), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%)
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
NKG VVA G+ GF + + ++ + + LP K +E ++E+ R+++S+ + D
Sbjct: 475 NKGAVVALPYGIEGFATQKHLVKEDGSKAQVDEKLPFKVLEFNKEKHRIIVSHSRTFEDK 534
Query: 259 Q 259
Q
Sbjct: 535 Q 535
>gi|456012524|gb|EMF46212.1| SSU ribosomal protein S1p [Planococcus halocryophilus Or1]
Length = 381
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 129/245 (52%), Gaps = 17/245 (6%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVE 141
+ E + +E DF + G +VKG V + + V I A +P E H+E
Sbjct: 1 MSEETNKMENRDFQT--GDRVKGVVAKIEEKAVTVTIEGAPFDGIIPISELSS---LHIE 55
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
+A + +E +I D++ VLS R + E AW+ +++ +V KG
Sbjct: 56 KASDSVQVGDELELIITKVEDENFVLSKRKVDAEQAWDDLETKFESGEIIEAEVKDVVKG 115
Query: 202 GVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM---A 256
G+V ++ G+RGFVP S + + E+ GK+L K VE+++E +RL+LS+R +
Sbjct: 116 GLVVDL-GVRGFVPASLVEDYFVESFEDYKGKELTFKIVEMEKENNRLILSHRAVVEKEK 174
Query: 257 DSQAQ-----LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+SQ + + G + G VQ + +GAF+DIGG++GL+H+SQ+SH+ V ++ V+ G
Sbjct: 175 ESQKEQVMDKIHAGDELKGKVQRIASFGAFVDIGGVDGLVHISQLSHEHVEKVSDVVTEG 234
Query: 312 DTLKV 316
+ V
Sbjct: 235 QEVTV 239
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 94/185 (50%), Gaps = 26/185 (14%)
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVVGANKGGVV 204
F I+ + ++ L+LS R + E+ ++ Q E V+ +KGKV G
Sbjct: 150 FKIVEMEKENNRLILSHRAV-----VEKEKESQKEQVMDKIHAGDELKGKVQRIASFGAF 204
Query: 205 AEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---- 256
++ G+ G V SQ+S K + G+++ +K + VD + R+ LS + +
Sbjct: 205 VDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSERISLSIKDTLPGPWD 264
Query: 257 --DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDT 313
D +A G SV GTV+ L YGAF+++ G+ GL+H+SQI+H +A VL G+
Sbjct: 265 AIDEKAPKG--SVHTGTVKRLVSYGAFVEVLPGVEGLVHISQIAHKHIATPNEVLTEGEK 322
Query: 314 LKVCL 318
++V +
Sbjct: 323 VEVKI 327
>gi|257784765|ref|YP_003179982.1| RNA binding S1 domain-containing protein [Atopobium parvulum DSM
20469]
gi|257473272|gb|ACV51391.1| RNA binding S1 domain protein [Atopobium parvulum DSM 20469]
Length = 418
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 133/244 (54%), Gaps = 14/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +S ++ + + G V GTV + LVDI KS +P +E I K V A
Sbjct: 18 EEMNSLIDGTVTDFDEGDLVNGTVVKIERDEVLVDIGYKSEGVIPARELSIRK--DVNPA 75
Query: 144 GIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
I+ G E +++ + + + LVLS + +YE AW+ + V+G+V+ KGG
Sbjct: 76 EIISLGEDVEALVLQKEDKEGRLVLSKKRAEYERAWKAVEDKFNAGETVEGEVIEVVKGG 135
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ- 259
++ ++ GLRGF+P S + + + +G + + +E+D ++ +VLS R + +++
Sbjct: 136 LILDI-GLRGFLPASLVDLRRVKDLGAFMGTRIEARVIEMDRNRNNVVLSRRIVLEEARK 194
Query: 260 -------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+L +G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 195 AERQDILGKLQVGMKLKGTVSSIVEFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGQ 254
Query: 313 TLKV 316
++V
Sbjct: 255 EVEV 258
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 122/249 (48%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++ G
Sbjct: 106 EYERAWKAVEDKFNAGETVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLG 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G + E +I + +++VLS R++ E R+ + +D++ +KG V
Sbjct: 161 AFMGTRIEARVIEMDRNRNNVVLSRRIV-----LEEARKAERQDILGKLQVGMKLKGTVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
+ G ++ G+ G V S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVEFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK 275
Query: 253 KAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D ++ + +++ GTV L +GAF+D+G G+ GL+H+S+++ V + V
Sbjct: 276 QTSEDPWRVLVSKYPVDAIIEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKQHVTAPSQV 335
Query: 308 LQPGDTLKV 316
+ GD ++V
Sbjct: 336 CKVGDVVQV 344
>gi|282882121|ref|ZP_06290762.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
lacrimalis 315-B]
gi|281298151|gb|EFA90606.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
lacrimalis 315-B]
Length = 725
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 103/175 (58%), Gaps = 10/175 (5%)
Query: 152 EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
E ++ ++ D ++VLS R ++ W+ + + +V KV+ KGG+ A ++G+
Sbjct: 342 EVFVLKMDDGDGNVVLSARRVEDMKVWDEIEESYNNHEIVTAKVINQVKGGLTASLDGIS 401
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR----KAMADSQAQ---- 261
F+P S ++ K + + +G D + ++ D+ + R+VLS + + + + ++Q
Sbjct: 402 AFIPASHVTVKFQRDLSKFVGDDFQCEIIDFDKRKRRIVLSRKNVLMRELEEKRSQIFES 461
Query: 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L IG V+ GTVQ L +GAF+DIGGI+GL+H+S++S +RV + V+ GD +KV
Sbjct: 462 LHIGDVIEGTVQRLTNFGAFVDIGGIDGLVHISELSWNRVKHPSEVVSAGDKVKV 516
>gi|392955741|ref|ZP_10321271.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
gi|391877983|gb|EIT86573.1| 30S ribosomal protein S1 [Bacillus macauensis ZFHKF-1]
Length = 381
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/244 (30%), Positives = 136/244 (55%), Gaps = 17/244 (6%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +++LE+ +G +GTV +++ A++D+ K A LP E + HV +
Sbjct: 3 EEMNTSLEEAKVLV-IGEITEGTVLKIEDKLAILDVKYKQDAILPINEVSNVAVDHVSD- 60
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAW-ERCRQLQSEDVVVKGKVVGANKGG 202
V + + + +D+ L +S + + +W E +L+S++V V+ KGG
Sbjct: 61 --VLQVGDRVTVKVLAMSDEQLTVSKKAVDSVSSWSELHAKLESQEVF-SVTVLDVVKGG 117
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
+VA+V G+RGF+P S + + + K L +K VE+D+E++R++LS+R + + +A
Sbjct: 118 LVADV-GVRGFIPASMVDTAFIDDFSSFKNKTLTVKVVELDQEKNRVILSHRIVLEEEEA 176
Query: 261 Q--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
L G V+ GTV+ + +GAF+D+GGI+GL+H+SQ+S+ RV + V++ G
Sbjct: 177 AKKQNRLSALEPGQVITGTVRRMTNFGAFVDLGGIDGLVHISQLSYQRVEHPSEVVEEGQ 236
Query: 313 TLKV 316
+ V
Sbjct: 237 EVAV 240
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 13/140 (9%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK------STAEELLGKDLPLKFVEVDEE 243
V+ G V G ++ G+ G V SQ+S + EE G+++ +K + VD +
Sbjct: 191 VITGTVRRMTNFGAFVDLGGIDGLVHISQLSYQRVEHPSEVVEE--GQEVAVKVLSVDRD 248
Query: 244 QSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH 298
R+ LS + A A + G++V GTV+ L +GAF+++ + GL+H+S++S
Sbjct: 249 NDRVSLSIKDVQPGPWASLPATIASGAIVTGTVKRLTTFGAFVEVAPNVEGLVHISEMSS 308
Query: 299 DRVADIATVLQPGDTLKVCL 318
+ + V+ G+T+ V +
Sbjct: 309 RHIGKPSEVVSVGETVTVKI 328
>gi|255994887|ref|ZP_05428022.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
gi|255993600|gb|EEU03689.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Eubacterium
saphenum ATCC 49989]
Length = 703
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/242 (27%), Positives = 125/242 (51%), Gaps = 11/242 (4%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E +EK + + G V+G + +++ +V++ K +P E + + + + +
Sbjct: 307 ELMDEIEKSMKSPKTGEIVEGVIDAINDKEIVVNLGCKKDGIIPNSEVALEEGQTIRDLF 366
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
V G + + ++ ++ D S++LS R ++ + W + D VK VV A K GV+
Sbjct: 367 SV-GDEIQAKVLKTDDGDGSILLSRRKMEASVHWAELEDALNNDETVKVDVVRAVKSGVI 425
Query: 205 AEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNR--------KA 254
A + + GF+P SQ+S + A E +G+ + K + VD++ + + S + K
Sbjct: 426 ANYKEVSGFIPLSQLSERFIEDASEFVGQTMEAKVIRVDQKLGKAIFSPKQLQKEEKNKR 485
Query: 255 MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
+ + +L +G + G V YGAF+DIGG++GLLH+S+IS ++ + VL GDT+
Sbjct: 486 LQELWKKLNVGDDIEGKVMRFTEYGAFVDIGGVDGLLHISEISWGKLKHPSEVLTVGDTI 545
Query: 315 KV 316
V
Sbjct: 546 NV 547
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 91/162 (56%), Gaps = 12/162 (7%)
Query: 166 VLSLRMIQYELAWERCRQLQSEDVV---VKGKVVGANKGGVVAEVEGLRGFVPFSQISS- 221
+ S + +Q E +R ++L + V ++GKV+ + G ++ G+ G + S+IS
Sbjct: 471 IFSPKQLQKEEKNKRLQELWKKLNVGDDIEGKVMRFTEYGAFVDIGGVDGLLHISEISWG 530
Query: 222 --KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA----QLGIGSVVIGTVQS 274
K +E L +G + +K + ++ E+ ++ L ++ M + + + G V G +
Sbjct: 531 KLKHPSEVLTVGDTINVKILSLNPEKGKISLGYKQNMPEPWSIIDDKYKAGDNVEGDIVQ 590
Query: 275 LKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+K YGAF+++ G++GL+H+S+ISH RV +I +VL GD ++
Sbjct: 591 IKEYGAFLELEPGLDGLIHISEISHSRVENINSVLHIGDNVE 632
>gi|389817642|ref|ZP_10208235.1| 30S ribosomal protein S1 [Planococcus antarcticus DSM 14505]
gi|388464410|gb|EIM06741.1| 30S ribosomal protein S1 [Planococcus antarcticus DSM 14505]
Length = 381
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 127/240 (52%), Gaps = 17/240 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIV 146
+ +E DF + G +VKG V + + V I A +P E H+E+A
Sbjct: 6 NMMENRDFQT--GDRVKGKVAKIEEKAVTVTIEGAPFDGIIPISELSS---LHIEKASDS 60
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAE 206
+ +E +I D++ VLS R + E AW+ + +++ +V KGG+V +
Sbjct: 61 VEVGDELDLIITKVEDENFVLSKRKVDAEQAWDELEKKFESGEIIEAEVKDVVKGGLVVD 120
Query: 207 VEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM---ADSQA- 260
+ G+RGFVP S + + E+ GK L K VE+++E +RL+LS+R + +SQ
Sbjct: 121 L-GVRGFVPASLVEDYFVESFEDYKGKTLTFKIVEMEKENNRLILSHRAVIEKEKESQKV 179
Query: 261 ----QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ G + G VQ + +GAF+DIGG++GL+H+SQ+SH+ V ++ V+ G + V
Sbjct: 180 QVMEKIHAGDELKGKVQRIASFGAFVDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTV 239
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSR 246
+KGKV G ++ G+ G V SQ+S K + G+++ +K + VD + R
Sbjct: 191 LKGKVQRIASFGAFVDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSER 250
Query: 247 LVLSNRKAMA------DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
+ LS + + D +A G SV G V+ L YGAF+++ G+ GL+H+SQI+H
Sbjct: 251 ISLSIKDTLPGPWDSIDEKAPKG--SVHTGMVKRLVSYGAFVEVLSGVEGLVHISQIAHK 308
Query: 300 RVADIATVLQPGDTLKV 316
+A VL G+ ++V
Sbjct: 309 HIATPNEVLTEGEEVQV 325
>gi|308069530|ref|YP_003871135.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
gi|305858809|gb|ADM70597.1| 30S ribosomal protein S1 [Paenibacillus polymyxa E681]
Length = 408
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 13/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A+V I K +P +E + + EEA + G + E II +
Sbjct: 28 GDTVKGTIVKLEDNQAVVSIGYKYDGIIPIRELS-SGLDNAEEA-VQVGQEVEARIISID 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R I E AWE+ QL V + V KGG+V +V G+RGF+P S +
Sbjct: 86 DGKEKLVLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GMRGFIPASMV 144
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ + G+ L + E+D E ++++LS + + A+L G ++
Sbjct: 145 ERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIV 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + + GD +KV
Sbjct: 205 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSEGDQVKV 251
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 15/129 (11%)
Query: 202 GVVAEVEGLRGFVPFSQIS-------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V S+I+ S + +E G + +K ++VD E+ ++ LS + A
Sbjct: 214 GAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSE---GDQVKVKVLKVDPEKGKISLSMKAA 270
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+ Q +V G V+ L +GAF++I G+ GL+H+SQISH + VL+
Sbjct: 271 QPGPWESAAGQFNNNDIVTGVVKRLVNFGAFVEIAPGVEGLVHISQISHKHIGTPQEVLE 330
Query: 310 PGDTLKVCL 318
G +KV +
Sbjct: 331 EGQEVKVKI 339
>gi|339638926|emb|CCC18127.1| ribosomal protein S1 [Lactobacillus pentosus IG1]
Length = 429
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 99 LGTKVKGTVFC-TDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI- 155
+G VKG V D++ +V I +P +E ++ V EA V + + VI
Sbjct: 25 VGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVIS 84
Query: 156 -IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IG ++ + S +LS R ++ W+ + +K V KGG+V + G+RGF+
Sbjct: 85 RIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTIKAPVTQVVKGGLVVDA-GVRGFI 143
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S I + G++L LK +E++ ++RL+LS+R A+ + Q + L
Sbjct: 144 PASMIDDHYVEDLNAYKGQELELKIIEIEPSENRLILSHR-AVVEKQREAQREEALKTLQ 202
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V L +GAF+D+GGI+GL+HVS+IS++RV A VL+ G +KV +
Sbjct: 203 AGDVVEGKVARLTNFGAFVDLGGIDGLVHVSEISYERVEKPADVLKVGQEVKVKI 257
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 19/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
E G +K V G +VD A ++P H +VE+ G + E II
Sbjct: 116 EAGHTIKAPVTQVVKGGLVVD--AGVRGFIPASMIDDH---YVEDLNAYKGQELELKIIE 170
Query: 158 ENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ L+LS R + Q E E + LQ+ DVV +GKV G ++ G+ G
Sbjct: 171 IEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EGKVARLTNFGAFVDLGGIDGL 229
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIG 265
V S+IS + + +G+++ +K + VD ++ R+ LS + + + + + G
Sbjct: 230 VHVSEISYERVEKPADVLKVGQEVKVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQG 289
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+V+ G V+ L +GAF+++ G+ GL+H+SQISH +A VL+ G +KV
Sbjct: 290 AVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKV 341
>gi|392948947|ref|ZP_10314547.1| SSU ribosomal protein S1p [Lactobacillus pentosus KCA1]
gi|334880465|emb|CCB81206.1| ribosomal protein S1 [Lactobacillus pentosus MP-10]
gi|392435920|gb|EIW13844.1| SSU ribosomal protein S1p [Lactobacillus pentosus KCA1]
Length = 428
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 124/235 (52%), Gaps = 17/235 (7%)
Query: 99 LGTKVKGTVFC-TDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI- 155
+G VKG V D++ +V I +P +E ++ V EA V + + VI
Sbjct: 25 VGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVIS 84
Query: 156 -IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IG ++ + S +LS R ++ W+ + +K V KGG+V + G+RGF+
Sbjct: 85 RIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTIKAPVTQVVKGGLVVDA-GVRGFI 143
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S I + G++L LK +E++ ++RL+LS+R A+ + Q + L
Sbjct: 144 PASMIDDHYVEDLNAYKGQELELKIIEIEPSENRLILSHR-AVVEKQREAQREEALKTLQ 202
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V L +GAF+D+GGI+GL+HVS+IS++RV A VL+ G +KV +
Sbjct: 203 AGDVVEGKVARLTNFGAFVDLGGIDGLVHVSEISYERVEKPADVLKVGQEVKVKI 257
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 19/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
E G +K V G +VD A ++P H +VE+ G + E II
Sbjct: 116 EAGHTIKAPVTQVVKGGLVVD--AGVRGFIPASMIDDH---YVEDLNAYKGQELELKIIE 170
Query: 158 ENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ L+LS R + Q E E + LQ+ DVV +GKV G ++ G+ G
Sbjct: 171 IEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EGKVARLTNFGAFVDLGGIDGL 229
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIG 265
V S+IS + + +G+++ +K + VD ++ R+ LS + + + + + G
Sbjct: 230 VHVSEISYERVEKPADVLKVGQEVKVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQG 289
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+V+ G V+ L +GAF+++ G+ GL+H+SQISH +A VL+ G +KV
Sbjct: 290 AVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKV 341
>gi|336427250|ref|ZP_08607254.1| hypothetical protein HMPREF0994_03260 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
gi|336010103|gb|EGN40090.1| hypothetical protein HMPREF0994_03260 [Lachnospiraceae bacterium
3_1_57FAA_CT1]
Length = 304
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 138/252 (54%), Gaps = 12/252 (4%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
ME T+E++ LE + + G + GTV + A++D+ + + ++
Sbjct: 1 MEEKRETMEDYAKELEASFRSIKEGDIITGTVIAVNEEEAVLDLQYYAQGIIKAEDMSGD 60
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
++ E + G + E ++ ++ + ++ LS + LAW+ + +E+ ++ K+
Sbjct: 61 PGFNILE-DVKVGDEIEATVVKTDDGEGNIKLSKKEAVQVLAWDILKGYMAENKNIRVKI 119
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPLKFVEVDEEQSRLVLSNR- 252
K G VA VEG+RGF+P SQ+S E LG++L ++ + VDEE+++LVLS +
Sbjct: 120 SEIVKAGAVAFVEGIRGFIPASQLSLTYVEDLEPWLGRELEVRVITVDEEKNKLVLSAKV 179
Query: 253 ----KAMADSQAQLGI---GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADI 304
+A+ D ++ + GS++ G V+SL PYGAF+ + G++GL+H+SQIS R+
Sbjct: 180 IEKERAVEDINHKISMLVPGSILEGVVESLMPYGAFVSLPDGLSGLVHISQISQKRIKKP 239
Query: 305 ATVLQPGDTLKV 316
+ VL GD +KV
Sbjct: 240 SEVLTVGDKVKV 251
>gi|304406967|ref|ZP_07388621.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
gi|304343954|gb|EFM09794.1| RNA binding S1 domain protein [Paenibacillus curdlanolyticus YK9]
Length = 407
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 125/231 (54%), Gaps = 20/231 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A V + K +P +E ++ + A V G + E ++ +
Sbjct: 30 GDTVKGTIVKIEDNQATVSLGYKYDGVIPLRELSSVQLDNAATAVQV-GQEVELKVVSID 88
Query: 160 EADDSLVLSLRMIQYELAWERCR----QLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ + LVLS R I E AWE + ++ DVV+ V KGG+VA+V G+RGF+P
Sbjct: 89 DEKEKLVLSKRAIDGEKAWEELQAKFDNSEAFDVVIADVV----KGGLVADV-GVRGFIP 143
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM-----ADSQ---AQLGIG 265
S + + + G+ + +K E+D E ++++LS ++ + A+ Q A L G
Sbjct: 144 ASMVERHFVEDFSDYKGRSIKVKVKEIDRENNKVILSAKEVLEADFEANKQKIIASLEPG 203
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GTVQ L P+GAFIDIGGI+GL+HVS+IS VA + G +++V
Sbjct: 204 QELEGTVQRLTPFGAFIDIGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRV 254
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 66/126 (52%), Gaps = 9/126 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMA- 256
G ++ G+ G V S+IS + A G+ + +K ++VD ++ LS + A
Sbjct: 217 GAFIDIGGIDGLVHVSEISWQHVAHPKDAVSEGQSVRVKVLKVDPAAGKISLSMKAAQPG 276
Query: 257 --DSQAQ-LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
DS G +V GTV+ + +GAFI+I G+ GL+H+SQI+H VA VL+ G
Sbjct: 277 PWDSAINSFNTGDIVTGTVRRIVDFGAFIEIAPGVEGLVHISQIAHRHVATPHEVLKEGQ 336
Query: 313 TLKVCL 318
+K +
Sbjct: 337 EVKAKI 342
>gi|161611290|ref|YP_139113.2| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
gi|161936373|ref|YP_141003.2| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
gi|386086285|ref|YP_006002159.1| Putative ribosomal protein S1-like DNA-binding protein
[Streptococcus thermophilus ND03]
gi|386344285|ref|YP_006040449.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
gi|387909377|ref|YP_006339683.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
gi|312277998|gb|ADQ62655.1| Putative ribosomal protein S1-like DNA-binding protein
[Streptococcus thermophilus ND03]
gi|339277746|emb|CCC19494.1| 30S ribosomal protein S1 [Streptococcus thermophilus JIM 8232]
gi|387574312|gb|AFJ83018.1| 30S ribosomal protein S1 [Streptococcus thermophilus MN-ZLW-002]
Length = 400
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRK--------AMADSQAQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ A + ++L +
Sbjct: 134 PASMIDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV G V L +GAFID+GG++GL+HV+++SH+R +V+ GD ++V
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIEV 245
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + A E +++ S+ VV GKV G ++ G+ G V +
Sbjct: 164 AENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G ++ +K + +DEE R+ LS + + +L G V+
Sbjct: 224 ELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +G F+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTV 331
>gi|323489677|ref|ZP_08094904.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
MPA1U2]
gi|323396808|gb|EGA89627.1| 30S ribosomal protein S1-like protein [Planococcus donghaensis
MPA1U2]
Length = 381
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 126/238 (52%), Gaps = 17/238 (7%)
Query: 90 LEKYDFNSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPG 148
+E DF + G +VKG V + + V I A +P E H+E+A
Sbjct: 8 MENRDFQT--GDRVKGVVAKIEEKAVTVTIEGAPFDGIIPISELSS---LHIEKASDSVE 62
Query: 149 LKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE 208
+ +E +I D++ VLS R + E AW+ +++ +V KGG+V ++
Sbjct: 63 VGDELELIITKVEDENFVLSKRKVDAEQAWDDLETKFKSGEIIEAEVKDVVKGGLVVDL- 121
Query: 209 GLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM---ADSQAQ-- 261
G+RGFVP S + + E+ GK+L K VE+++E +RL+LS+R + +SQ +
Sbjct: 122 GVRGFVPASLVEDYFVESFEDYKGKELTFKIVEMEKENNRLILSHRAVVEKEKESQKEQV 181
Query: 262 ---LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G + G VQ + +GAF+DIGG++GL+H+SQ+SH+ V ++ V+ G + V
Sbjct: 182 MDKIHAGDELKGKVQRIASFGAFVDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTV 239
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 95/185 (51%), Gaps = 26/185 (14%)
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVVGANKGGVV 204
F I+ + ++ L+LS R + E+ ++ Q E V+ +KGKV G
Sbjct: 150 FKIVEMEKENNRLILSHRAV-----VEKEKESQKEQVMDKIHAGDELKGKVQRIASFGAF 204
Query: 205 AEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---- 256
++ G+ G V SQ+S K + G+++ +K + VD + R+ LS + +
Sbjct: 205 VDIGGVDGLVHISQLSHEHVEKVSDVVTEGQEVTVKVLSVDRDSERISLSIKDTLPGPWD 264
Query: 257 --DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDT 313
D +A G SV GTV+ L YGAF+++ G+ GL+H+SQI+H +A + VL G+
Sbjct: 265 AIDEKAPKG--SVHTGTVKRLVSYGAFVEVLPGVEGLVHISQIAHKHIATPSEVLTEGEK 322
Query: 314 LKVCL 318
++V +
Sbjct: 323 VEVKI 327
>gi|116627481|ref|YP_820100.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMD-9]
gi|116100758|gb|ABJ65904.1| SSU ribosomal protein S1P [Streptococcus thermophilus LMD-9]
Length = 400
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRK--------AMADSQAQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ A + ++L +
Sbjct: 134 PASMIDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEAEAMEARKEVFSKLEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV G V L +GAFID+GG++GL+HV+++SH+R +V+ GD ++V
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIEV 245
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + A E +++ S+ VV GKV G ++ G+ G V +
Sbjct: 164 AENRFILSRREVVEAEAMEARKEVFSKLEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G ++ +K + +DEE R+ LS + + +L G V+
Sbjct: 224 ELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +G F+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTV 331
>gi|296133096|ref|YP_003640343.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
JR]
gi|296031674|gb|ADG82442.1| hydroxymethylbutenyl pyrophosphate reductase [Thermincola potens
JR]
Length = 674
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 141/273 (51%), Gaps = 28/273 (10%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
EE+ + EE R ME + + FH G V GTV ++ +V
Sbjct: 268 EEVKRKMEEMTNRDEGMNMEK-ALQFKAFHP-----------GDMVTGTVVQVNDDEVMV 315
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177
D+ KS +P +E+ +++E V G + + V++ + + ++LS R EL
Sbjct: 316 DVGGKSEGVIPLRESSCCNHNNLKELFTV-GDQVKVVVLKAQDDEGKIILSKRKADAELT 374
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL---LGKDLP 234
W + V+G V KGG++ ++ G++GF+P S + +S E+L LG+ L
Sbjct: 375 WGCLEEAFDSGTPVEGTVREVVKGGLLLDL-GVQGFMPASLVE-RSYVEDLNQYLGQKLK 432
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIG 285
K +E+ + ++VLS RKA+ + +AQ L G VV GTV+ L +GAF+DIG
Sbjct: 433 AKIIELRRDARKVVLS-RKAILEEEAQAKKAETLRNLQSGQVVKGTVKRLTDFGAFVDIG 491
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
GI+GLLHVS+++ RV + V++ GD ++V +
Sbjct: 492 GIDGLLHVSEMAWYRVGHPSEVVKEGDQIEVFI 524
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 120/234 (51%), Gaps = 21/234 (8%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F+S GT V+GTV G L+D+ + ++P A + + +VE+ G K +
Sbjct: 382 FDS--GTPVEGTVREVVKGGLLLDLGVQ--GFMP---ASLVERSYVEDLNQYLGQKLKAK 434
Query: 155 IIGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGL 210
II +VLS + I E A E R LQS VV KG V G ++ G+
Sbjct: 435 IIELRRDARKVVLSRKAILEEEAQAKKAETLRNLQSGQVV-KGTVKRLTDFGAFVDIGGI 493
Query: 211 RGFVPFSQISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG--- 263
G + S+++ E++ G + + ++VD+ ++ LS +K + + +
Sbjct: 494 DGLLHVSEMAWYRVGHPSEVVKEGDQIEVFILDVDKNTEKVSLSLKKVLPNPWDTVAEKY 553
Query: 264 -IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+GS+V G V L P+GAF+++ G++GL+H+SQ+++ RVA+ + V+ GD +K
Sbjct: 554 PVGSIVEGKVVRLAPFGAFVELEPGVDGLVHISQLANRRVANCSEVVSAGDMVK 607
>gi|358065808|ref|ZP_09152342.1| hypothetical protein HMPREF9473_04405 [Clostridium hathewayi
WAL-18680]
gi|356695671|gb|EHI57296.1| hypothetical protein HMPREF9473_04405 [Clostridium hathewayi
WAL-18680]
Length = 285
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPL 235
W+ RQ+ E ++K KV KGG +A V+ ++ F+P SQ+S EE +G+ L +
Sbjct: 85 WQELRQMLDEKTIIKVKVKEIVKGGAIAYVDEMKAFIPASQLSLSYVENLEEFVGQYLEV 144
Query: 236 KFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVVIGTVQSLKPYGAFIDI-GG 286
+ + D E RLVLS R + + Q G +V GTV S+KPYGAF+++ GG
Sbjct: 145 RVITTDPEAKRLVLSARDILKERQEAEKSKALESYKAGDIVEGTVDSIKPYGAFVNLDGG 204
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
++GLLH+SQIS R+ + VL+ G +KV
Sbjct: 205 VSGLLHISQISTQRIKHPSVVLKEGQKIKV 234
>gi|160936761|ref|ZP_02084127.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
BAA-613]
gi|158440253|gb|EDP17999.1| hypothetical protein CLOBOL_01651 [Clostridium bolteae ATCC
BAA-613]
Length = 258
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPL 235
W + Q+ + VVK K+ A KGGVV +E +R F+P SQ+S++ E+ GK +
Sbjct: 58 WAQFAQMMEDRTVVKVKIAEAVKGGVVTSLEEVRAFIPASQLSTEYVEKLEDWQGKYVEA 117
Query: 236 KFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVIGTVQSLKPYGAFIDI-GG 286
+ VD E+ RLVLS R+ + AQ G VV GTV S+KPYGAFI + G
Sbjct: 118 VIITVDPEKKRLVLSGREVEKEKKEAQKKERMAQFKAGDVVEGTVDSIKPYGAFIKLDDG 177
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++GLLH+SQIS R+ + VL G T+KV +
Sbjct: 178 VDGLLHISQISTQRIKHPSAVLTEGQTVKVKI 209
>gi|55736656|gb|AAV60298.1| 30S ribosomal protein S1 [Streptococcus thermophilus LMG 18311]
gi|55738547|gb|AAV62188.1| 30S ribosomal protein S1 [Streptococcus thermophilus CNRZ1066]
Length = 417
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 93 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGLRGFI 150
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRK--------AMADSQAQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ A + ++L +
Sbjct: 151 PASMIDTRFVRNTEQFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEV 210
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV G V L +GAFID+GG++GL+HV+++SH+R +V+ GD ++V
Sbjct: 211 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEIEV 262
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + A E +++ S+ VV GKV G ++ G+ G V +
Sbjct: 181 AENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 240
Query: 218 QISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G ++ +K + +DEE R+ LS + + +L G V+
Sbjct: 241 ELSHERNVSPKSVVSVGDEIEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 300
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +G F+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 301 GKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTV 348
>gi|365841809|ref|ZP_09382863.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Flavonifractor
plautii ATCC 29863]
gi|364576961|gb|EHM54256.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Flavonifractor
plautii ATCC 29863]
Length = 650
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 11/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F LEK G KV G V VD+ K + Y+P E VE+
Sbjct: 288 ESFAEMLEKSIKTLNTGEKVTGVVTGITPTEIYVDLGTKHAGYIPVSELTDDPTAKVEDL 347
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G + E ++ N+ + + LS + + +W+ Q + E V+G V NKGGV
Sbjct: 348 -VKIGDEIETYVMRVNDQEGVVTLSKKRLDTVKSWDDIEQAREEHTTVEGVVTEENKGGV 406
Query: 204 VAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLS--------NRK 253
V ++G+R FVP SQ + ++ +LL + + L+ EV+ + R+V S
Sbjct: 407 VVSIKGVRVFVPASQTGLPRETPMSQLLKQHVRLRITEVNRARRRVVGSIRAVEAEERAA 466
Query: 254 AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
A+ A + GTV+SL YGAF+DIGG++G++H+S++S R+ + V+ GDT
Sbjct: 467 KAAEVWANIEENKRYTGTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVSVGDT 526
Query: 314 LKV 316
++V
Sbjct: 527 VEV 529
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S++S K +E + +G + + + D+E+ ++
Sbjct: 483 GTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVSVGDTVEVYVISFDKEKKKIS 542
Query: 249 LSNRKAMADSQAQLGIGSVVIGTVQSLK-----PYGAFIDI-GGINGLLHVSQISHDRVA 302
L K + + ++ IG G V +++ +GAF ++ G++GL+H+SQI+ R+
Sbjct: 543 L-GMKDRSQNPWEVFIGKYQPGDVANVRVVKLMTFGAFAEVVPGVDGLIHISQIADHRID 601
Query: 303 DIATVLQPGDTLKV 316
VL G + V
Sbjct: 602 KPGDVLSEGQMVDV 615
>gi|260431168|ref|ZP_05785139.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
gi|260414996|gb|EEX08255.1| ribosomal protein S1 [Silicibacter lacuscaerulensis ITI-1157]
Length = 558
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 127/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
T+EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 5 TMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVDLKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + + D V+G + G
Sbjct: 61 GEAPEIAVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYANDERVEGAIFGRV 120
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 181 SRAEQRAEVISNLTEGQTVEGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILS 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETIKV 247
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK N E +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 96 EEAWDRLEKAYANDE---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 148
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ S E V+G V +
Sbjct: 149 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVISNLTEGQTVEGVVKNITE 208
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 209 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETIKVQVIKINKETHRISLGMKQLQE 268
Query: 257 DSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D A+ +GSV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 269 DPWDLVAAKYPLGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMS 314
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 98/229 (42%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
LG+ KG V + GA V++ + E K K+V IV +E V++ E
Sbjct: 280 LGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVMVLE 338
Query: 159 -NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ A + L L+ Q WE + E V+G+V + G+ +EG + G V
Sbjct: 339 IDGAKRRVSLGLKQTQRN-PWEVFAETHPEGTQVEGEVKNITEFGLFIGLEGDIDGMVHL 397
Query: 217 SQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSV 267
S +S E+ + G + EVD E+ R+ LS + D ++A G+ GSV
Sbjct: 398 SDLSWDERGEDAIQNYRKGDVVQAVVSEVDVEKERISLSIKALGGDKFAEAVGGVKRGSV 457
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ V +++ G ++ G+ + S +S DR GD + V
Sbjct: 458 ITVEVTAIEDGGIEVEYEGMKSFIRRSDLSRDRAEQRPERFSVGDKVDV 506
>gi|373115355|ref|ZP_09529529.1| ribosomal protein S1 [Lachnospiraceae bacterium 7_1_58FAA]
gi|371670421|gb|EHO35502.1| ribosomal protein S1 [Lachnospiraceae bacterium 7_1_58FAA]
Length = 650
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 121/243 (49%), Gaps = 11/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F LEK G KV G V VD+ K + Y+P E VE+
Sbjct: 288 ESFAEMLEKSIKTLNTGEKVTGVVTGITPTEIYVDLGTKHAGYIPVSELTDDPTAKVEDL 347
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G + E ++ N+ + + LS + + +W+ Q + E V+G V NKGGV
Sbjct: 348 -VKIGDEIETYVMRVNDQEGVVTLSKKRLDTVKSWDDIEQAREEHTTVEGVVTEENKGGV 406
Query: 204 VAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLS--------NRK 253
V ++G+R FVP SQ + ++ +LL + + L+ EV+ + R+V S
Sbjct: 407 VVSIKGVRVFVPASQTGLPRETPMSQLLKQHVRLRITEVNRARRRVVGSIRAVEAEERAA 466
Query: 254 AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
A+ A + GTV+SL YGAF+DIGG++G++H+S++S R+ + V+ GDT
Sbjct: 467 KAAEVWANIEENKRYTGTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVSVGDT 526
Query: 314 LKV 316
++V
Sbjct: 527 VEV 529
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 61/133 (45%), Gaps = 9/133 (6%)
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLV 248
G V G ++ G+ G V S++S K +E + +G + + + D+E+ ++
Sbjct: 483 GTVKSLTSYGAFVDIGGVDGMVHISELSWSRIKHPSEVVSVGDTVEVYVISFDKEKKKIS 542
Query: 249 LSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVAD 303
L + + + G V V L +GAF ++ G++GL+H+SQI+ R+
Sbjct: 543 LGMKDRSQNPWEVFTGKYQPGDVANVRVVKLMTFGAFAEVVPGVDGLIHISQIADHRIDK 602
Query: 304 IATVLQPGDTLKV 316
VL G + V
Sbjct: 603 PGDVLSEGQMVDV 615
>gi|302035807|ref|YP_003796129.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
gi|300603871|emb|CBK40203.1| 30S ribosomal protein S1 [Candidatus Nitrospira defluvii]
Length = 571
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 16/233 (6%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N E GT +G V +VDI KS +P + H E A + G + + +
Sbjct: 27 NFEEGTITEGMVVAIGKDKVVVDIGYKSEGMIPADQ-----FSHEELAQLKVGDRLQVYL 81
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+AD +LVLS WE L E+ ++GK++ KGG++ ++ G++ F+P
Sbjct: 82 EECEDADGNLVLSKEKADKMKIWEELETLHKEEKSIEGKIISRIKGGMMVDI-GVKAFLP 140
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
SQI + L+GK PLK ++++ + +V+S R + +++ + L G
Sbjct: 141 GSQIDLHPVRDLDGLVGKTFPLKIIKINHRRGNVVVSRRVLLEETRDRRRQTTLSTLKEG 200
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++ GTV+++ YGAFID+GGI+GLLH++ +S RV + + Q D ++V +
Sbjct: 201 QLIQGTVKNITDYGAFIDLGGIDGLLHITDMSWGRVGHPSELFQVSDKVEVTV 253
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 19/208 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
++G + G +VDI K A+LP + +H ++ ++ G+V G II N
Sbjct: 117 IEGKIISRIKGGMMVDIGVK--AFLPGSQIDLHPVRDLD--GLV-GKTFPLKIIKINHRR 171
Query: 163 DSLVLSLRMIQYELAWERCRQLQ----SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R++ E +R RQ E +++G V G ++ G+ G + +
Sbjct: 172 GNVVVSRRVLLEETR-DRRRQTTLSTLKEGQLIQGTVKNITDYGAFIDLGGIDGLLHITD 230
Query: 219 ISSKSTAE--ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
+S EL + + ++ D E R+ L ++ AD A+ +G+ V G
Sbjct: 231 MSWGRVGHPSELFQVSDKVEVTVLKYDRETGRISLGLKQKSADPWTGVAAKYPVGTRVRG 290
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V SL YGAF+++ G+ GL+HVS++S
Sbjct: 291 RVVSLTDYGAFVELEPGVEGLVHVSEMS 318
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 17/230 (7%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVIIG 157
+GT+V+G V + GA V++ + E + H+++H V E V+
Sbjct: 284 VGTRVRGRVVSLTDYGAFVELEPGVEGLVHVSEMSWTHEVRHPSRVVSVGDQVEAAVL-- 341
Query: 158 ENEADDSLVLSLRMIQYEL-AWERCRQLQSEDVVVKGKVVG-ANKGGVVAEVEGLRGFVP 215
N S +SL M Q W+ ++GKV + G V EG+ G +
Sbjct: 342 -NIDPGSRKISLGMKQTAPNPWDMIEAKYPAGTRIEGKVKSLTDFGAFVGLEEGIDGLIH 400
Query: 216 FSQISSKSTAE---ELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ-----LGIG 265
S +S + EL G+ + + +D+E+ RL L ++ D + +G
Sbjct: 401 ISDMSWTKHIKHPSELFKKGQKVDAVVIRIDKEKERLSLGYKQLSRDPWEEQIPNKYRVG 460
Query: 266 SVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTL 314
+ G V + +G FI++ G + GL+H+S++ D + +PGD +
Sbjct: 461 DSITGKVSKIADFGLFIELDGDVEGLIHISEVGLDANVRMEEKFKPGDDV 510
>gi|405981074|ref|ZP_11039403.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
gi|404393093|gb|EJZ88150.1| 30S ribosomal protein S1 [Actinomyces neuii BVS029A5]
Length = 490
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 130/234 (55%), Gaps = 22/234 (9%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
KY FN G V+GTV D L+DI K+ + T+E I KH + V + +
Sbjct: 32 KY-FND--GDIVEGTVVKVDRDEVLLDIGYKTEGVILTRELSI---KHDVDPDDVVAVGD 85
Query: 152 --EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG 209
E +++ + + + L+LS + QYE AW +++ ED VV G V+ KGG++ ++ G
Sbjct: 86 QIEALVLQKEDKEGRLLLSKKRAQYERAWGSIEKIKQEDGVVTGTVIEVVKGGLIVDI-G 144
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ------ 261
LRGF+P S + + + +G+++ K +E+D+ ++ +VLS R + +Q++
Sbjct: 145 LRGFLPASLVEMRRVRDLQPYVGREIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSSFL 204
Query: 262 --LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH---DRVADIATVLQP 310
L G + G V S+ +GAF+D+GG++GL+HVS++S D +++ V QP
Sbjct: 205 QTLQKGQIRNGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQP 258
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 41/219 (18%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V GTV G +VDI + +LP A + +++ V + G + E II ++
Sbjct: 127 VTGTVIEVVKGGLIVDIGLR--GFLP---ASLVEMRRVRDLQPYVGREIEAKIIELDKNR 181
Query: 163 DSLVLSLRMIQYELAWERCRQLQSE------DVVVKGKVVGANKGGVVA---------EV 207
+++VLS R AW Q QSE + KG++ + GVV+ ++
Sbjct: 182 NNVVLSRR------AW--LEQTQSEVRSSFLQTLQKGQI----RNGVVSSIVNFGAFVDL 229
Query: 208 EGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S++S K +G+ + ++ ++VD ++ R+ LS + D
Sbjct: 230 GGVDGLVHVSELSWKHIDHPSEVVEVGQPVTVEVLDVDMDRERVSLSLKATQEDPWQAFA 289
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 290 RTHAIGQVVPGKVTKLVPFGAFVRVEDGIEGLVHISELA 328
>gi|430750092|ref|YP_007213000.1| 30S ribosomal protein S1 [Thermobacillus composti KWC4]
gi|430734057|gb|AGA58002.1| ribosomal protein S1 [Thermobacillus composti KWC4]
Length = 411
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 122/227 (53%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV ++ A V + K +P +E ++ + +A + G + E +I +
Sbjct: 38 GDIVKGTVIKIEDNQAYVSLGYKYDGVIPLRELSAVQLDNAADA-VQVGQELELKVISID 96
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R + AW+R ++ + V++ V KGG+V +V G+RGF+P S +
Sbjct: 97 DDKERLVLSKRQVDAGKAWDRLQEQFEKGEVLEVTVADVVKGGLVVDV-GVRGFIPASMV 155
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ G+ L +K E+D E ++++LS ++ + + L G ++
Sbjct: 156 ERHYVEDFSSYKGQTLRVKIKELDRETNKVILSAKEVLEEEYEANKRRIMESLEPGQIIE 215
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L P+GAF+DIGGI+GL+HVS+++ + VA V+ G +KV
Sbjct: 216 GTVQRLTPFGAFVDIGGIDGLVHVSELAWEHVAHPRDVVSEGQQVKV 262
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 83/165 (50%), Gaps = 12/165 (7%)
Query: 163 DSLVLSLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ ++LS + + +YE R + +++G V G ++ G+ G V S++
Sbjct: 183 NKVILSAKEVLEEEYEANKRRIMESLEPGQIIEGTVQRLTPFGAFVDIGGIDGLVHVSEL 242
Query: 220 SSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGT 271
+ + A G+ + +K ++VD E ++ LS + A + + G +V GT
Sbjct: 243 AWEHVAHPRDVVSEGQQVKVKVLKVDPEAGKISLSIKAAQPGPWELAADKFHNGDIVTGT 302
Query: 272 VQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLK 315
V+ + +GAF+++ G+ GL+H+SQI+H +A VL+ G +K
Sbjct: 303 VKRIVSFGAFVEVAPGVEGLVHISQIAHRHIATPHEVLKEGQEVK 347
>gi|224476595|ref|YP_002634201.1| 30S ribosomal protein S1 [Staphylococcus carnosus subsp. carnosus
TM300]
gi|222421202|emb|CAL28016.1| putative 30S ribosomal protein S1 [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 392
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 126/233 (54%), Gaps = 19/233 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G K+ G V +++ +VD+ K S +P + H I V+E V +
Sbjct: 16 GDKISGQVQKVEDKQVIVDVDGGKFSGIVPISQLSTHHIDSPNEVVKEGDAVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+ ENE+ + +LS+R ++ E ++E ++ Q + +++ KV KGG+V +V G RGFV
Sbjct: 76 VDEENESG-AYILSIRQLEQEKSYEYLQEKQDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM---------ADSQAQLG 263
P S IS+ + G+ L L+ E+D +R++LS RKA+ A+ + L
Sbjct: 134 PASLISTDFIEDFSSFDGQVLELRVEELDPANNRVILS-RKAVEQERNEAKKAELLSSLS 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GT+ L +GAF+DIGG++GL+HVS++SH+ V V+ GD + V
Sbjct: 193 EGDVIEGTIARLTNFGAFVDIGGVDGLVHVSELSHEHVDKPEDVVSVGDKVNV 245
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ ++LS + ++ E + +L S E V++G + G ++ G+ G V S
Sbjct: 164 ANNRVILSRKAVEQERNEAKKAELLSSLSEGDVIEGTIARLTNFGAFVDIGGVDGLVHVS 223
Query: 218 QISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + E+++ G + +K V+++ R+ LS + + + Q+ S++
Sbjct: 224 ELSHEHVDKPEDVVSVGDKVNVKVKSVEQDSERISLSIKDTLPSPFESIKGQIHADSIIE 283
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V L +GAF++I G+ GL+H+S+IS + + VL+P + V
Sbjct: 284 GRVVRLTDFGAFVEIAAGVQGLVHISEISRKHIGTPSEVLEPNQEVTV 331
>gi|372281616|ref|ZP_09517652.1| 30S ribosomal protein S1 [Oceanicola sp. S124]
Length = 560
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 6 SMEEFEALLNESFEMDTPEEGSVVKGKVIAVEAGQAIIDVGYKMEGRVDLKEFA----NP 61
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 62 GEAPEITVGDEVEVFLRSAENARGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRV 121
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 122 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 181
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 182 SRAEQRAEVISNLQEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILT 241
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 242 IGETVKV 248
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 108/208 (51%), Gaps = 16/208 (7%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 112 RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDRR 167
Query: 162 DDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R I E E+ ++ S E V G V + G ++ G+ G + +
Sbjct: 168 RGNIVVSRRAILEESRAEQRAEVISNLQEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTD 227
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
++ + + E+L G+ + ++ ++++++ R+ L ++ D A+ + SV G
Sbjct: 228 MAWRRVNHPSEILTIGETVKVQVIKINKDTHRISLGMKQLQEDPWDLVAAKYPLSSVHAG 287
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 288 RVTNITDYGAFVELEPGVEGLVHVSEMS 315
>gi|339010823|ref|ZP_08643392.1| putative 30S ribosomal protein S1 [Brevibacillus laterosporus LMG
15441]
gi|421873083|ref|ZP_16304699.1| 30S ribosomal protein S1 homolog [Brevibacillus laterosporus GI-9]
gi|338772157|gb|EGP31691.1| putative 30S ribosomal protein S1 [Brevibacillus laterosporus LMG
15441]
gi|372458029|emb|CCF14248.1| 30S ribosomal protein S1 homolog [Brevibacillus laterosporus GI-9]
Length = 393
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 125/226 (55%), Gaps = 18/226 (7%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI--I 156
+G VK V + + LVD+ K +P E HVE+ + +EF +
Sbjct: 19 VGDIVKAKVTKVEEKQVLVDVGYKYDGLIPISELSGL---HVEKTSDIVSEGDEFTVKVT 75
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
NE + LV+S + + ++AWE + Q + ++ +V KGG+V +V GLRGF+P
Sbjct: 76 KLNEEKEELVVSKKAVDAQIAWEELAKKQQNNETIEAEVKDVVKGGLVVDV-GLRGFIPA 134
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIG 265
S + + + G+ L LK +E+D+E+++++LS+ KA+ + +A+ + G
Sbjct: 135 SMVERHFVEDFSDYKGRTLTLKVMELDQEKNKVILSH-KAVLEEEAKASKGKVLDRIEAG 193
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+++ GTVQ L +G F+DIGG++GL+HVS+++ + V A V++ G
Sbjct: 194 NILEGTVQRLTDFGVFVDIGGVDGLVHVSELAWEHVDKPADVVKEG 239
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 243 EQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
E R+ LS ++A D + G VV GTV+ L +GAF++I + GL+H+SQI+
Sbjct: 252 ENERISLSMKEAQPGPYHDIAEKFKKGDVVTGTVKRLTGFGAFVEIAPHVEGLVHISQIA 311
Query: 298 HDRVADIATVLQPGDTLKV 316
+ RV + VL+ G + V
Sbjct: 312 NRRVKSPSEVLKEGQEVNV 330
>gi|312869066|ref|ZP_07729240.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
gi|417885402|ref|ZP_12529556.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
gi|311095312|gb|EFQ53582.1| putative ribosomal protein S1 [Lactobacillus oris PB013-T2-3]
gi|341595324|gb|EGS37973.1| 30S ribosomal protein S1 [Lactobacillus oris F0423]
Length = 413
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 128/234 (54%), Gaps = 17/234 (7%)
Query: 98 ELGTKVKGTVFC-TDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
++G VKG V D+R A+V I A +P +E ++ + +A V G + + V+
Sbjct: 22 KVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKV-GDELDLVV 80
Query: 156 I---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I G ++ + S +LS R ++ W+ ++ + + KV A KGG+V + G+RG
Sbjct: 81 ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAKVTQAVKGGLVVDA-GVRG 139
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQL 262
FVP S I+ + + G++L K +E++ ++RL+LS+++ + A+L
Sbjct: 140 FVPASMITDHYVEDLNQFKGQELEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAEL 199
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V + +GAF+D+GG++GL+HVS+IS+D V + VL G +KV
Sbjct: 200 QPGDVVEGKVARMTNFGAFVDLGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKV 253
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 125/239 (52%), Gaps = 23/239 (9%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
+K+D + KV V +G LV + A ++P H +VE+ G +
Sbjct: 111 KKFDDGETITAKVTQAV-----KGGLV-VDAGVRGFVPASMITDH---YVEDLNQFKGQE 161
Query: 151 EEFVIIGENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAE 206
EF II +++ L+LS + I ++E A E+ +LQ DVV +GKV G +
Sbjct: 162 LEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQPGDVV-EGKVARMTNFGAFVD 220
Query: 207 VEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DS 258
+ G+ G V S+IS K + G+D+ +K + VD ++ R+ LS ++ + D
Sbjct: 221 LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPWDDI 280
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + GS + GTV+ L +GAF+++ G+ GL+H+SQISH +A A VL+PG ++V
Sbjct: 281 EEKAPAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQV 339
>gi|350270739|ref|YP_004882047.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/putative 30S
ribosomal protein S1 [Oscillibacter valericigenes
Sjm18-20]
gi|348595581|dbj|BAK99541.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/putative 30S
ribosomal protein S1 [Oscillibacter valericigenes
Sjm18-20]
Length = 656
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 13/244 (5%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F L + G KV G V VD+ AK +AY+ E + +V+
Sbjct: 291 ESFEELLNQSFKTLNTGEKVTGIVTAIGPTEVQVDVGAKQAAYIKASE--LSNDPNVKPE 348
Query: 144 GIVP-GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
I+ G + E I+ N+ + LS + + WE Q + V++G V NKGG
Sbjct: 349 DILKVGDEIEAYIVRVNDVEGYAELSKKRLDAVKVWENIEQAVEDKTVMEGNVTEVNKGG 408
Query: 203 VVAEVEGLRGFVPFSQ--ISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
+V V+G+R FVP SQ + + E ++ ++ L+ EV+ + R+V S R + +++
Sbjct: 409 IVVSVKGVRVFVPASQSGMPRGANLETMVKSNVQLRITEVNRARRRVVGSIRSVLDEARK 468
Query: 261 --------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+ +G GTV+S+ YG F+DIGG++G++H+S++S R+ + V + GD
Sbjct: 469 AAQEEVWNNIEVGKRYTGTVKSMTAYGVFVDIGGVDGMVHISELSWSRIKTPSEVCKVGD 528
Query: 313 TLKV 316
TL+V
Sbjct: 529 TLEV 532
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQSRLV 248
G V GV ++ G+ G V S++S T E+ +G L + + D E+ ++
Sbjct: 486 GTVKSMTAYGVFVDIGGVDGMVHISELSWSRIKTPSEVCKVGDTLEVYVISFDPEKHKIS 545
Query: 249 LSNR-KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVAD 303
L + +++ +G +G V + L +GAF ++ G++GL+H+SQI+ R+
Sbjct: 546 LGVKDRSINPWDVFMGKYQVGDVAKVRIVKLMTFGAFAEVVPGVDGLIHISQIADRRIE- 604
Query: 304 IATVLQPGDTL 314
+PGD L
Sbjct: 605 -----KPGDVL 610
>gi|324997170|ref|ZP_08118282.1| 30S ribosomal protein S1 [Pseudonocardia sp. P1]
Length = 502
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 136/248 (54%), Gaps = 22/248 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH- 139
E+F +A++ KY FN G V+GT+ D L+DI K+ +P++E I KH
Sbjct: 23 EDFLAAIDQTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPSRELSI---KHD 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDS-LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
V+ A +V + ++ + E + L+LS + QYE AW L+ D V+G V+
Sbjct: 77 VDPAEVVEVGEFVEALVLQKEDKEGRLILSKKRAQYERAWGTIEALKEADEPVEGTVIEV 136
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA 256
KGG++ ++ GLRGF+P S + + + +G+ + K +E+D+ ++ +VLS R +
Sbjct: 137 VKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRKIEAKIIELDKNRNNVVLSRRAWLE 195
Query: 257 DSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVL 308
+Q+ QL G V G V S+ +GAF+D+GG++GL+HVS++S + + V+
Sbjct: 196 QTQSEVRSEFLNQLQRGQVRKGVVSSVVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVV 255
Query: 309 QPGDTLKV 316
+ G + V
Sbjct: 256 EVGQEVTV 263
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 102/208 (49%), Gaps = 19/208 (9%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V+GTV G ++DI + +LP A + +++ V + G K E II ++
Sbjct: 129 VEGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYVGRKIEAKIIELDKNR 183
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ V KG V G ++ G+ G V S+
Sbjct: 184 NNVVLSRRAWLEQTQSEVRSEFLNQLQRGQVR-KGVVSSVVNFGAFVDLGGVDGLVHVSE 242
Query: 219 ISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G+++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 243 LSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQEDPWRLYARTHAIGQIVPG 302
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQIS 297
V L P+GAF+ + GI GL+H+S+++
Sbjct: 303 KVTKLVPFGAFVRVEEGIEGLVHISELA 330
>gi|346991764|ref|ZP_08859836.1| 30S ribosomal protein S1 [Ruegeria sp. TW15]
Length = 558
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 5 SMEEFEALLNESFEMDTPEEGSVVKGKVLAIEAGQAIIDVGYKMEGRVDLKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 61 GEAPEIAVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 120
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 181 SRAEQRAEVIGNLSEGQTVEGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILT 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETIKV 247
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 117/226 (51%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 96 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 148
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ SE V+G V +
Sbjct: 149 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQTVEGVVKNITE 208
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 209 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILTIGETIKVQVIKINKETHRISLGMKQLQE 268
Query: 257 DSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D A+ +GSV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 269 DPWDLVAAKYPLGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMS 314
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 99/229 (43%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
LG+ +G V + GA V++ A + E K K+V IV +E V++ E
Sbjct: 280 LGSVHQGRVTNITDYGAFVELEAGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVMVLE 338
Query: 159 -NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ A + L L+ Q WE + E V+G+V + G+ +EG + G V
Sbjct: 339 IDGAKRRVSLGLKQTQRN-PWEVFAETHPEGTEVEGEVKNITEFGLFIGLEGDIDGMVHL 397
Query: 217 SQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSV 267
S +S E+ + G + EVD E+ R+ LS + D ++A G+ GS+
Sbjct: 398 SDLSWDERGEDAIQNYRKGDMVSAVVSEVDVEKERISLSIKALGGDKFAEAVGGVKRGSI 457
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V V +++ G ++ G+ + S +S DR GD + V
Sbjct: 458 VTVEVTAIEDGGIEVEYEGMKSFIRRSDLSRDRAEQRPERFSVGDKVDV 506
>gi|445374299|ref|ZP_21426347.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5460]
gi|445388804|ref|ZP_21428062.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5461]
gi|444750552|gb|ELW75354.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5461]
gi|444750649|gb|ELW75445.1| 30S ribosomal protein S1 [Streptococcus thermophilus MTCC 5460]
Length = 400
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 102/172 (59%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRK--------AMADSQAQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ A + ++L +
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDPAENRFILSRREVVEAEAIEARKEVFSKLEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GSVV G V L +GAFID+GG++GL+HV+++SH+R +V+ GD ++V
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVSVGDEVEV 245
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 85/168 (50%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + A E +++ S+ VV GKV G ++ G+ G V +
Sbjct: 164 AENRFILSRREVVEAEAIEARKEVFSKLEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G ++ +K + +DEE R+ LS + + +L G V+
Sbjct: 224 ELSHERNVSPKSVVSVGDEVEVKVLAIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +G F+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGGFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTV 331
>gi|402571670|ref|YP_006621013.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus meridiei DSM 13257]
gi|402252867|gb|AFQ43142.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfosporosinus meridiei DSM 13257]
Length = 660
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 12/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
GTKV GTV VDI K +P E + + E+ + V+ EN
Sbjct: 295 GTKVTGTVVKITREEIFVDIGWKCEGVIPLGELSVSRKTRPEDTVSIGDQISAVVVRVEN 354
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E + VLS R E A +R +L ++ +VV KGG+V +V GLRGFVP SQI
Sbjct: 355 E-EGHTVLSKRKADEEGAKDRLEKLVESKEEIQAEVVEVVKGGLVVDV-GLRGFVPASQI 412
Query: 220 --SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVI 269
++ LG+ L L+ ++ D + ++VLS + + + +A L G VV
Sbjct: 413 QLGYVDDLDQFLGQTLRLRLIDYDPAKRKVVLSQKVILEEERAVKRTQLLESLKEGDVVT 472
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+ + +G F+DIGGI+GLLH+S +++ R+ + +L+ GD ++V
Sbjct: 473 GTVKRMADFGVFVDIGGIDGLLHISDMAYTRIKHPSDMLKIGDEVEV 519
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 65/255 (25%), Positives = 129/255 (50%), Gaps = 27/255 (10%)
Query: 72 RTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
R A EG LE+ + K + +E+ VKG G +VD+ + ++P +
Sbjct: 364 RKADEEGAKDRLEKLVES--KEEIQAEVVEVVKG--------GLVVDVGLR--GFVPASQ 411
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI-QYELAWERCRQLQS--ED 188
++ +V++ G +I + A +VLS ++I + E A +R + L+S E
Sbjct: 412 I---QLGYVDDLDQFLGQTLRLRLIDYDPAKRKVVLSQKVILEEERAVKRTQLLESLKEG 468
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQ 244
VV G V GV ++ G+ G + S ++ K ++ L +G ++ ++ ++++++
Sbjct: 469 DVVTGTVKRMADFGVFVDIGGIDGLLHISDMAYTRIKHPSDMLKIGDEVEVQVLKLEQQT 528
Query: 245 SRLVLSNRKAMADSQAQ----LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD 299
++ L ++ AQ IG++V G V + P+GAF+ +G G++GL+H+SQ++
Sbjct: 529 GKVSLGLKQLKESPWAQAAKNFPIGAIVNGKVMRITPFGAFVGLGDGVDGLVHISQLADH 588
Query: 300 RVADIATVLQPGDTL 314
RV + V++ GD +
Sbjct: 589 RVNKVEEVVKVGDMV 603
>gi|125973232|ref|YP_001037142.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain-containing protein [Clostridium thermocellum ATCC
27405]
gi|281417431|ref|ZP_06248451.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|385778858|ref|YP_005688023.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|419723125|ref|ZP_14250260.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
gi|419724971|ref|ZP_14252026.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|125713457|gb|ABN51949.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum ATCC 27405]
gi|281408833|gb|EFB39091.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum JW20]
gi|316940538|gb|ADU74572.1| hydroxymethylbutenyl pyrophosphate reductase [Clostridium
thermocellum DSM 1313]
gi|380771591|gb|EIC05456.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum YS]
gi|380780892|gb|EIC10555.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Clostridium
thermocellum AD2]
Length = 694
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/273 (27%), Positives = 143/273 (52%), Gaps = 16/273 (5%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLE-----EFHSALEKYDFNSELGTKVKGTVFCTDNRGA 115
+ + EE ++ +G+ LE +F +A E G VKG + ++
Sbjct: 266 DWVIEEVIKKMSELNKQGMVDILENDGEIDFANAFENSFVRIHAGDTVKGKIIGFNSNEV 325
Query: 116 LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175
VD+ K+ +P +E ++E+ + G + E ++ N+ + ++ LS R +
Sbjct: 326 FVDLGYKADGIIPLEEYTDDPNFNIEKE-VKIGEEVEVLVEMVNDGEGNVRLSKRKVDAI 384
Query: 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDL 233
+W+ + V VV KGGV+A +G+R FVP SQ+S + + E L + +
Sbjct: 385 KSWDDIVKAYENKTPVNAYVVEVVKGGVIASYKGVRIFVPASQVSDRYVKDLNEFLKRSI 444
Query: 234 PLKFVEVDEEQSRLVLSNR-------KAMAD-SQAQLGIGSVVIGTVQSLKPYGAFIDIG 285
++ +E++E++ ++V S R +A+A+ + + +G V GTV+SL +GAF+DIG
Sbjct: 445 TVRILELNEKRRKVVGSARVIIEEEKEALANRTWNSMEVGKVFKGTVKSLTDFGAFVDIG 504
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G++GL+H+S++S RV + VL+ GD ++V +
Sbjct: 505 GVDGLIHISELSWTRVKHPSEVLKVGDEVEVTV 537
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQS 245
V KG V G ++ G+ G + S++S K +E L +G ++ + +E D+E+
Sbjct: 486 VFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKK 545
Query: 246 RLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
++ L RK M D+ + + +G VV TV P+GAF+++ G++GL+H+SQIS
Sbjct: 546 KVSLGYRK-MEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSK 604
Query: 300 RVADIATVLQPG 311
R+A + L+ G
Sbjct: 605 RLAKVEDALEIG 616
>gi|256003709|ref|ZP_05428697.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
gi|255992270|gb|EEU02364.1| RNA binding S1 domain protein [Clostridium thermocellum DSM 2360]
Length = 419
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 132/244 (54%), Gaps = 11/244 (4%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
+F +A E G VKG + ++ VD+ K+ +P +E ++E+
Sbjct: 20 DFANAFENSFVRIHAGDTVKGKIIGFNSNEVFVDLGYKADGIIPLEEYTDDPNFNIEKE- 78
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
+ G + E ++ N+ + ++ LS R + +W+ + V VV KGGV+
Sbjct: 79 VKIGEEVEVLVEMVNDGEGNVRLSKRKVDAIKSWDDIVKAYENKTPVNAYVVEVVKGGVI 138
Query: 205 AEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR-------KAM 255
A +G+R FVP SQ+S + + E L + + ++ +E++E++ ++V S R +A+
Sbjct: 139 ASYKGVRIFVPASQVSDRYVKDLNEFLKRSITVRILELNEKRRKVVGSARVIIEEEKEAL 198
Query: 256 AD-SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
A+ + + +G V GTV+SL +GAF+DIGG++GL+H+S++S RV + VL+ GD +
Sbjct: 199 ANRTWNSMEVGKVFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTRVKHPSEVLKVGDEV 258
Query: 315 KVCL 318
+V +
Sbjct: 259 EVTV 262
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 73/132 (55%), Gaps = 11/132 (8%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQS 245
V KG V G ++ G+ G + S++S K +E L +G ++ + +E D+E+
Sbjct: 211 VFKGTVKSLTDFGAFVDIGGVDGLIHISELSWTRVKHPSEVLKVGDEVEVTVLEFDKEKK 270
Query: 246 RLVLSNRKAMADS-----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
++ L RK M D+ + + +G VV TV P+GAF+++ G++GL+H+SQIS
Sbjct: 271 KVSLGYRK-MEDNPWYKIEEKYKVGDVVKVTVLRFAPFGAFVELEKGVDGLVHISQISSK 329
Query: 300 RVADIATVLQPG 311
R+A + L+ G
Sbjct: 330 RLAKVEDALEIG 341
>gi|383764899|ref|YP_005443881.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
gi|381385167|dbj|BAM01984.1| 30S ribosomal protein S1 [Caldilinea aerophila DSM 14535 = NBRC
104270]
Length = 363
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/219 (32%), Positives = 112/219 (51%), Gaps = 20/219 (9%)
Query: 116 LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175
LV+I +K +P + + V+ + G + VI + E D VLS+ Q +
Sbjct: 34 LVNIGSKRDGVVPQSDLARLDPEFVK--SLREGQTIDVVIAKQPEEDSVFVLSIADAQQK 91
Query: 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI----------SSKSTA 225
W QL + KVVG NKGG+ E +RGFVP S + ++
Sbjct: 92 RDWLIAEQLLESGEITTRKVVGYNKGGLTVEFNHIRGFVPASHLVDMPRNLTEEQRRAEL 151
Query: 226 EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKP 277
E +G+++ LK +EVD ++ RLV+S A + ++ L +G VV G V+S++P
Sbjct: 152 ESRIGEEMRLKVIEVDPKRRRLVMSQMLAEREYRSTQREELFKTLSVGDVVEGVVRSIRP 211
Query: 278 YGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+GAF+DIGG++GLLHVS+I + + VL G ++V
Sbjct: 212 FGAFVDIGGVDGLLHVSEIGYGNINHPREVLSVGQKIQV 250
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 85/165 (51%), Gaps = 18/165 (10%)
Query: 170 RMIQYELAWER-CRQLQSEDV--------VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220
R++ ++ ER R Q E++ VV+G V G ++ G+ G + S+I
Sbjct: 172 RLVMSQMLAEREYRSTQREELFKTLSVGDVVEGVVRSIRPFGAFVDIGGVDGLLHVSEIG 231
Query: 221 SKST--AEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTV 272
+ E+L G+ + ++ + +D E R+ LS RK + + + + +GS+V T+
Sbjct: 232 YGNINHPREVLSVGQKIQVQVIRIDPETQRVALSRRKLLPNPWDGIEERYPVGSIVPATI 291
Query: 273 QSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
L +GAF ++ G+ GL+H+S+++ VA+ ++PGD + V
Sbjct: 292 TRLSDFGAFAELEPGVEGLIHISELADIAVAEPLKTVKPGDRVMV 336
>gi|355574274|ref|ZP_09044117.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
str. F0356]
gi|354818564|gb|EHF03053.1| hypothetical protein HMPREF1008_00094 [Olsenella sp. oral taxon 809
str. F0356]
Length = 390
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 136/243 (55%), Gaps = 12/243 (4%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE +S ++ + + G V GTV ++ L+DI KS +P++E I K + E+
Sbjct: 18 EEMNSLIDGTITDFDEGDLVTGTVVKIEHDEVLLDIGFKSEGVIPSRELSIRKDINPEDV 77
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+ G E +++ + + + L+LS + +YE AW R + + V+G+V+ KGG+
Sbjct: 78 -VALGDGIEALVLQKEDKEGRLILSKKRAEYERAWNRVEEKFNAGENVEGEVIEVVKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ-- 259
+ ++ GLRGF+P S + + + LG + + +E+D ++ +VLS R + +++
Sbjct: 137 ILDI-GLRGFLPASLVDLRRVKDLNAFLGTRIEARVIEMDRNRNNVVLSRRVVLEEARKA 195
Query: 260 ------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
++L G + G+V S+ +GAF+D+GGI+GL+H+S++S + V + V++ G
Sbjct: 196 ERSEILSKLQPGMRLKGSVSSIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQE 255
Query: 314 LKV 316
++V
Sbjct: 256 VEV 258
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 119/249 (47%), Gaps = 27/249 (10%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
E+ A + + G V+G V G ++DI + +LP A + ++ V++
Sbjct: 106 EYERAWNRVEEKFNAGENVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLN 160
Query: 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVV--------VKGKVV 196
G + E +I + +++VLS R++ E R+ + +++ +KG V
Sbjct: 161 AFLGTRIEARVIEMDRNRNNVVLSRRVV-----LEEARKAERSEILSKLQPGMRLKGSVS 215
Query: 197 GANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNR 252
G ++ G+ G + S++S +G+++ ++ ++VD + R+ L +
Sbjct: 216 SIVDFGAFVDLGGIDGLIHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLK 275
Query: 253 KAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATV 307
+ D L +G++V GTV L +GAF+D+G G+ GL+H+S+++ V A V
Sbjct: 276 QTTEDPWRTLVKKYPVGAIVEGTVTKLVTFGAFVDLGNGVEGLVHISEMAKQHVDAPAQV 335
Query: 308 LQPGDTLKV 316
GDT++V
Sbjct: 336 CAVGDTVQV 344
>gi|315640571|ref|ZP_07895678.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
gi|315483678|gb|EFU74167.1| 30S ribosomal protein S1 [Enterococcus italicus DSM 15952]
Length = 404
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 14/233 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ A+V I A +P +E ++ + E + + + VI
Sbjct: 28 VGDVVKGEVLAVEDKQAIVGIEGAGVEGVVPVKELSTLPVEDINELVKIGDVLDLVVIST 87
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + W + + +++ V KGG+V +V G+RGFVP
Sbjct: 88 IGKDKENGSYLLSKRRLDAKKVWADIEKDFEDGKILEAPVTNIVKGGLVVDV-GVRGFVP 146
Query: 216 FSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIG 265
S + EE GK L LK +E++ ++RL+LS++ + A+ A + G
Sbjct: 147 ASMVEDHFVDDFEEYKGKTLTLKIIEIEPSENRLILSHKAVVEAEKEDKKAELLASIKEG 206
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ G V L +GAF+D+GGI+GL+HVS+ISH V + VL GDT+ V +
Sbjct: 207 DQLEGNVARLTNFGAFVDLGGIDGLVHVSEISHGHVGKPSDVLAVGDTVNVAV 259
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSR 246
++G V G ++ G+ G V S+IS K + +G + + + +D R
Sbjct: 209 LEGNVARLTNFGAFVDLGGIDGLVHVSEISHGHVGKPSDVLAVGDTVNVAVLSIDPTTER 268
Query: 247 LVLSNRKAMA------DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
+ LS + + + +AQ +G+ + GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 269 ISLSIKDTLPGPWDNIEEKAQ--VGATLEGTVKRLTSFGAFVEVFPGVEGLVHISQISHK 326
Query: 300 RVADIATVLQPGDTLKV 316
+A VL GDT++V
Sbjct: 327 HIATPHEVLHEGDTVQV 343
>gi|410453981|ref|ZP_11307924.1| RNA binding S1 domain-containing protein [Bacillus bataviensis LMG
21833]
gi|409932661|gb|EKN69619.1| RNA binding S1 domain-containing protein [Bacillus bataviensis LMG
21833]
Length = 379
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 15/232 (6%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
N E+G KV G V + + LV + +K +P E H+E+A +E
Sbjct: 12 NFEIGDKVTGQVTKVEEKQVLVAVQGSKLDGIIPISELSS---LHIEKASDAAAEGDELE 68
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+ +++L+LS R + E AW+ Q V + +V KGG+V ++ G+RGFV
Sbjct: 69 LEVLKVEEEALILSKRKVDAEKAWDHLEQQFQNGEVFETEVKDVVKGGLVVDL-GVRGFV 127
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S + + + + G+ L K VE+D+E++RL+LS+R + + + L
Sbjct: 128 PASLVEAHFVEDFSDYKGRSLSFKIVELDKEKNRLILSHRAVVEQEKGKQKQNILGALKA 187
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ + +GAF+DIGGI+GL+H+SQ+S++ V V+ G ++V
Sbjct: 188 GQVIDGTVQRITDFGAFVDIGGIDGLVHISQLSYEHVDKPTDVVHEGQQVQV 239
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 28/232 (12%)
Query: 105 GTVFCTDNR-----GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VF T+ + G +VD+ + ++P A + + VE+ G F I+ +
Sbjct: 102 GEVFETEVKDVVKGGLVVDLGVR--GFVP---ASLVEAHFVEDFSDYKGRSLSFKIVELD 156
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS------EDVVVKGKVVGANKGGVVAEVEGLRGF 213
+ + L+LS R + + E+ +Q Q+ V+ G V G ++ G+ G
Sbjct: 157 KEKNRLILSHRAV---VEQEKGKQKQNILGALKAGQVIDGTVQRITDFGAFVDIGGIDGL 213
Query: 214 VPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
V SQ+S K T G+ + +K + VD + R+ LS ++ + + + G
Sbjct: 214 VHISQLSYEHVDKPTDVVHEGQQVQVKVLSVDRDNERISLSIKETLPGPWSNISEKAPKG 273
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
S++ G V+ L YGAF+++ G+ GL+H+SQI+H + VL+ G +KV
Sbjct: 274 SILDGKVKRLVSYGAFVEVFPGVEGLVHISQIAHKHIGTPHEVLKEGQEVKV 325
>gi|392394326|ref|YP_006430928.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dehalogenans ATCC 51507]
gi|390525404|gb|AFM01135.1| (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase
[Desulfitobacterium dehalogenans ATCC 51507]
Length = 661
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 85/272 (31%), Positives = 137/272 (50%), Gaps = 26/272 (9%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSEL-----GTKVKGTVFCTDNRGA 115
+ + EE Y++ T ME E H + D+ E+ G V GTV ++
Sbjct: 261 DWIIEEVYKKMST--MEN-----NETHEMMNMEDWAEEMQNLHRGALVTGTVVKINHDEV 313
Query: 116 LVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQY 174
VD+ KS + +E + ++ + IV G K V++ + + VLS R
Sbjct: 314 FVDLGWKSEGVISLKELTV--ASGLQPSDIVSIGDKISAVVLRVENEEGNPVLSKRRADE 371
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
A ++ ++L ++GKV KGG++ +V G+RGFVP SQI + + G+
Sbjct: 372 MAAVDKLKELAESKEEIQGKVADVVKGGLIVDV-GMRGFVPASQIQPGYVEDLNQFKGQT 430
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQAQ-----LGI---GSVVIGTVQSLKPYGAFIDI 284
L L+ +E D + R+VLS ++ + + QA LG G VV G V+ L +GAF+DI
Sbjct: 431 LRLRVIEFDPAKRRVVLSQKEILQEEQAAKKEHLLGTLQEGDVVSGVVKRLAQFGAFVDI 490
Query: 285 GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GG++GLLHVS I++ RV + + GD ++V
Sbjct: 491 GGVDGLLHVSDIAYTRVKHPSEYVNVGDEVEV 522
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/240 (24%), Positives = 122/240 (50%), Gaps = 17/240 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+A++K +E +++G V G +VD+ + ++P + + +VE+
Sbjct: 373 AAVDKLKELAESKEEIQGKVADVVKGGLIVDVGMR--GFVPASQI---QPGYVEDLNQFK 427
Query: 148 GLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVV 204
G +I + A +VLS + ++Q E A ++ L + E VV G V + G
Sbjct: 428 GQTLRLRVIEFDPAKRRVVLSQKEILQEEQAAKKEHLLGTLQEGDVVSGVVKRLAQFGAF 487
Query: 205 AEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRK----AMA 256
++ G+ G + S I+ K +E + +G ++ ++ ++VD++Q ++ L ++
Sbjct: 488 VDIGGVDGLLHVSDIAYTRVKHPSEYVNVGDEVEVQILKVDKDQGKISLGLKQLKPSPWE 547
Query: 257 DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ + +GS+V G V + P+GAF+ + GI+ L+H+SQ+S RV + +++ GD ++
Sbjct: 548 SAPEKYALGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDIVKVGDMVQ 607
>gi|241889493|ref|ZP_04776792.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
gi|241863800|gb|EER68183.1| 30S ribosomal protein S1 [Gemella haemolysans ATCC 10379]
Length = 402
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 74/245 (30%), Positives = 128/245 (52%), Gaps = 27/245 (11%)
Query: 100 GTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG- 157
G KV GTV DN VD+ A+ + + +++E+ + G + E + G
Sbjct: 18 GDKVTGTVSKIDNDKVYVDVAGAQYDCVILRNQITRKPFENIEDV-LSVGDEVEAQVTGI 76
Query: 158 ----ENEADDS---LVLSLRMIQ-------YELAWERCRQLQSEDVVVKGKVVGANKGGV 203
E ++D + LS ++++ EL+W + +++ V G KGG+
Sbjct: 77 RADREKRSEDVPGVIYLSHKILENAEYKKLMELSWAGIIEKFENGELIQATVSGQTKGGL 136
Query: 204 VAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNR--------K 253
+A+VEGLR F+P S I +K + + +G + K EVD+ +++++L+ R K
Sbjct: 137 LADVEGLRAFIPGSYIDTKFRKDLSKFVGNEYTFKIEEVDKSKNKIILNRRVILEEEKAK 196
Query: 254 AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+A+ + G V+ G V + +GAF++IG ++GLLH+S+ISH RV +A VL GDT
Sbjct: 197 KLAEVYGNINEGDVIEGKVSRITDFGAFVNIGEVDGLLHISEISHARVEKVADVLSVGDT 256
Query: 314 LKVCL 318
+KV +
Sbjct: 257 IKVAV 261
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 92/173 (53%), Gaps = 18/173 (10%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQ------SEDVVVKGKVVGANKGGV---VAEVEG 209
+++ + ++L+ R+I L E+ ++L +E V++GKV G + EV+G
Sbjct: 176 DKSKNKIILNRRVI---LEEEKAKKLAEVYGNINEGDVIEGKVSRITDFGAFVNIGEVDG 232
Query: 210 LRGFVPFSQISSKSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGI 264
L S + A+ L +G + + + VD+E ++ LS + + ++A +
Sbjct: 233 LLHISEISHARVEKVADVLSVGDTIKVAVIAVDKENEKVSLSAKTLLPTQWEVARATIKA 292
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + G V++ +GAF+++ + GL+H+SQISH+RV ++ VL+ GD + V
Sbjct: 293 GDALEGVVRNTTAFGAFVEVLPDVEGLVHISQISHERVTNVEDVLKKGDKVNV 345
>gi|334140902|ref|YP_004534108.1| 30S ribosomal protein S1 [Novosphingobium sp. PP1Y]
gi|359400194|ref|ZP_09193183.1| small subunit ribosomal protein S1 [Novosphingobium
pentaromativorans US6-1]
gi|333938932|emb|CCA92290.1| small subunit ribosomal protein S1 [Novosphingobium sp. PP1Y]
gi|357598434|gb|EHJ60163.1| small subunit ribosomal protein S1 [Novosphingobium
pentaromativorans US6-1]
Length = 567
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ +N A++D+ KS +P +E + +H G+ G + E +
Sbjct: 30 GRVVKGTITAIENDKAVIDVGLKSEGRVPLREFARGEAEH----GLKVGDEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
A+ +LS + E AW++ E V+G + G KGG +++G F+P SQ+
Sbjct: 86 NAEGEAMLSRDRARREAAWDKLENEFGEGKRVEGVIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ P + +++D + +V+S R + +++A+ L G V+
Sbjct: 146 DIRPVRDVTPLMDVPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVID 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V+ GDT+ V +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVINIGDTVTVQI 254
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 107/223 (47%), Gaps = 16/223 (7%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
+A +K + G +V+G +F G VD+ + A+LP + I ++ V V
Sbjct: 101 EAAWDKLENEFGEGKRVEGVIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVTPLMDV 159
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGV 203
P + F I+ + ++V+S R + E E+ +L SE V+ G V G
Sbjct: 160 P---QPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVIDGVVKNITDYGA 216
Query: 204 VAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD-- 257
++ G+ G + + +S K +G + ++ + ++ E R+ L ++ +D
Sbjct: 217 FVDLGGIDGLLHVTDMSYKRVNHPSEVINIGDTVTVQIIRINSETQRISLGMKQLESDPW 276
Query: 258 --SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ A+ +G + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 277 EGAAAKYPVGVKLSGTVTNITEYGAFVELEPGIEGLVHVSEMS 319
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 91/214 (42%), Gaps = 24/214 (11%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G + G V + GA VD+ L + ++ H E I G II N
Sbjct: 201 GQVIDGVVKNITDYGAFVDLGG-IDGLLHVTDMSYKRVNHPSEV-INIGDTVTVQIIRIN 258
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ L ++ ++ + WE V + G V + G E+E G+ G V S+
Sbjct: 259 SETQRISLGMKQLESD-PWEGAAAKYPVGVKLSGTVTNITEYGAFVELEPGIEGLVHVSE 317
Query: 219 ISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----I 264
+S ST++E+ + +EVD ++ R+ L ++A + +
Sbjct: 318 MSWTKKNVHPGKIVSTSQEV-----EVMVLEVDSDKRRISLGLKQAQQNPWEAFAEKHPV 372
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
GS V G V++ +G FI + G ++G++H+S I+
Sbjct: 373 GSQVEGEVKNATEFGLFIGLDGDVDGMVHMSDIA 406
>gi|259503206|ref|ZP_05746108.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
gi|259168863|gb|EEW53358.1| 30S ribosomal protein S1 [Lactobacillus antri DSM 16041]
Length = 413
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 127/234 (54%), Gaps = 17/234 (7%)
Query: 98 ELGTKVKGTVFC-TDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
++G VKG V D+R A+V I A +P +E ++ + +A + G + + V+
Sbjct: 22 KVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDA-VKVGDELDLVV 80
Query: 156 I---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
I G ++ + S +LS R ++ W+ ++ + + KV A KGG+V + G+RG
Sbjct: 81 ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDDGETITAKVTQAVKGGLVVDA-GVRG 139
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQL 262
FVP S I+ + + G+ L K +E++ ++RL+LS+++ + A+L
Sbjct: 140 FVPASMITDHYVEDLNQFKGQKLEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAEL 199
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V + +GAF+D+GG++GL+HVS+IS+D V + VL G +KV
Sbjct: 200 QAGDVVEGKVARMTNFGAFVDLGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKV 253
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 126/239 (52%), Gaps = 23/239 (9%)
Query: 91 EKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLK 150
+K+D + KV V +G LV + A ++P H +VE+ G K
Sbjct: 111 KKFDDGETITAKVTQAV-----KGGLV-VDAGVRGFVPASMITDH---YVEDLNQFKGQK 161
Query: 151 EEFVIIGENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAE 206
EF II +++ L+LS + I ++E A E+ +LQ+ DVV +GKV G +
Sbjct: 162 LEFKIIEIEPSENRLILSHKEIVKAEHEQAAEKIFAELQAGDVV-EGKVARMTNFGAFVD 220
Query: 207 VEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DS 258
+ G+ G V S+IS K + G+D+ +K + VD ++ R+ LS ++ + D
Sbjct: 221 LGGVDGLVHVSEISYDHVDKPSDVLSAGQDVKVKVLSVDPDRERISLSIKQTLPGPWDDI 280
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ + GS + GTV+ L +GAF+++ G+ GL+H+SQISH +A A VL+PG ++V
Sbjct: 281 EEKAPAGSTLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVQV 339
>gi|407477496|ref|YP_006791373.1| 30S ribosomal protein S1 [Exiguobacterium antarcticum B7]
gi|407061575|gb|AFS70765.1| 30S ribosomal protein S1 [Exiguobacterium antarcticum B7]
Length = 377
Score = 104 bits (259), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 128/237 (54%), Gaps = 22/237 (9%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF V G V +++ AL+DI K+ A LP E H+++ V + +E
Sbjct: 10 DFEIHRDQVVTGMVVKIEDKQALIDIGYKTEAILPISEVSS---LHLDDIRGVLKVGDEL 66
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSE----DVVVKGKVVGANKGGVVAEVEG 209
+ + D+ +V+S R + AW + +VVVK V KGG+V ++ G
Sbjct: 67 QVKVKKITDEEVVVSKREVDALQAWGKVEAKYESGEIFEVVVKDIV----KGGLVVDI-G 121
Query: 210 LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQ 259
+RGF+P S + + + +G+ + +K VE+D+E++R++LS++ + ++
Sbjct: 122 VRGFIPASLVERHYVEDFSDYIGRSIEVKVVELDQEKNRVILSHKAVVEGELNAKKKETL 181
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
QL +G ++ GTVQ L +GAF+DIGG++GL+H+S+++H RV + ++ G + V
Sbjct: 182 EQLEVGQILEGTVQRLTDFGAFVDIGGVDGLVHISEMAHHRVERPSDIVTEGQKIDV 238
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 103/210 (49%), Gaps = 17/210 (8%)
Query: 114 GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MI 172
G +VDI + ++P A + + +VE+ G E ++ ++ + ++LS + ++
Sbjct: 115 GLVVDIGVR--GFIP---ASLVERHYVEDFSDYIGRSIEVKVVELDQEKNRVILSHKAVV 169
Query: 173 QYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE--- 227
+ EL ++ L+ +V +++G V G ++ G+ G V S+++
Sbjct: 170 EGELNAKKKETLEQLEVGQILEGTVQRLTDFGAFVDIGGVDGLVHISEMAHHRVERPSDI 229
Query: 228 -LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFI 282
G+ + +K + VD + ++ LS ++ Q+ G +V G V+ + +GAF+
Sbjct: 230 VTEGQKIDVKVLGVDRDTEKVKLSIKETQPGPWKQMEGKIEAGDIVKGRVRRIVQFGAFV 289
Query: 283 DIG-GINGLLHVSQISHDRVADIATVLQPG 311
++ + GLLH+SQI++ + + VL+ G
Sbjct: 290 ELAPQVEGLLHISQIANRHIGSPSEVLEEG 319
>gi|329766865|ref|ZP_08258393.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
gi|328837590|gb|EGF87215.1| hypothetical protein HMPREF0428_00090 [Gemella haemolysans M341]
Length = 419
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/265 (29%), Positives = 138/265 (52%), Gaps = 30/265 (11%)
Query: 83 LEEFHSALEKYDFNSEL---GTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIK 138
LE ++ E+ +SE+ G KV GTV DN VD+ A+ + + +
Sbjct: 15 LEVMTTSFEELLNSSEMLKKGDKVTGTVSKIDNDKVYVDVAGAQYDCVILRNQITRKPFE 74
Query: 139 HVEEAGIVPGLKEEFVIIG-----ENEADDS---LVLSLRMIQ-------YELAWERCRQ 183
++EE + G + E + G E ++D + LS ++++ EL+W +
Sbjct: 75 NIEEV-LSVGDEVEAQVTGIRADREKRSEDVPGVIYLSYKILENAEYKKLMELSWTGIIE 133
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVD 241
+++ V G KGG++A+VEGLR F+P S I +K + + +G + K EVD
Sbjct: 134 KFENGELIQATVSGQTKGGLLADVEGLRAFIPGSYIDTKFRKDLSKFVGNEYTFKIEEVD 193
Query: 242 EEQSRLVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHV 293
+ +++++L+ R K +A+ + G V+ G V + +GAF++IG ++GLLH+
Sbjct: 194 KSKNKIILNRRVILEEEKAKKLAEVYGNINEGDVIEGKVSRITDFGAFVNIGEVDGLLHI 253
Query: 294 SQISHDRVADIATVLQPGDTLKVCL 318
S+ISH RV ++ V+ GDT+KV +
Sbjct: 254 SEISHARVEKVSDVISVGDTVKVAV 278
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 92/173 (53%), Gaps = 18/173 (10%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQ------SEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + ++L+ R+I L E+ ++L +E V++GKV G + + G
Sbjct: 193 DKSKNKIILNRRVI---LEEEKAKKLAEVYGNINEGDVIEGKVSRITDFGAFVNIGEVDG 249
Query: 213 FVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGI 264
+ S+IS K + +G + + + VD+E ++ LS + + ++A +
Sbjct: 250 LLHISEISHARVEKVSDVISVGDTVKVAVIAVDKENEKISLSAKTLLPTQWEVARATIKA 309
Query: 265 GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G V++ +GAF+++ + GL+H+SQISHDRV ++ VL+ GD + V
Sbjct: 310 GDVLEGVVRNTTAFGAFVEVLPEVEGLVHISQISHDRVTNVEDVLKKGDKVTV 362
>gi|225174807|ref|ZP_03728804.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
alkaliphilus AHT 1]
gi|225169447|gb|EEG78244.1| hydroxymethylbutenyl pyrophosphate reductase [Dethiobacter
alkaliphilus AHT 1]
Length = 678
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 86/313 (27%), Positives = 151/313 (48%), Gaps = 33/313 (10%)
Query: 36 NSRK-----NKTIVSAVAISNAETREREELNQLFEEAYERCRTAP----------MEGVS 80
N+RK T V +A+S A + E+L ++ + P ME
Sbjct: 221 NTRKLADVCRSTGVRTIAVSEAHELDAEQLKEVRTVGVTAGASTPDWTIKEVIGKMENEK 280
Query: 81 FT-LEEFHSALEKYDFNSEL-----GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
T L+E +A E+ + E+ G V GTV + LVDI KS LP QE +
Sbjct: 281 NTELQEEQTATEEVSLDQEIKEFSAGDVVTGTVVQVSDDEVLVDIGYKSEGVLPRQEVIL 340
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+ + + + G + E + ++ + ++LS + I+ + W + E ++ GK
Sbjct: 341 EGDQMLADV-MENGQEVEVAVKKVDDQEGRIILSRKAIERKQKWAELEKAFEEGTILSGK 399
Query: 195 VVGANKGGVVAEVEG-LRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSN 251
V A G+V E+ G F+P S + + + E G+++ K +E+ E+ +L+LS
Sbjct: 400 VKEAVPAGLVVELGGGYDAFMPGSLVDVRYIPDFNEFQGQEISFKIIEMRPEKEKLILSR 459
Query: 252 RKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
++ + + A +L G ++ GTV+ L +GAF+D+GGI+GL+H+S+IS R+ +
Sbjct: 460 KQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVGGIDGLVHISEISWHRIDN 519
Query: 304 IATVLQPGDTLKV 316
VL GD ++V
Sbjct: 520 PGEVLSVGDEIEV 532
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 15/231 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
E GT + G V G +V++ A++P + ++++ + G + F II
Sbjct: 391 EEGTILSGKVKEAVPAGLVVELGGGYDAFMP---GSLVDVRYIPDFNEFQGQEISFKIIE 447
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFV 214
+ L+LS + + E A + ++ +E ++KG V G +V G+ G V
Sbjct: 448 MRPEKEKLILSRKQVLEEEAAVQKDKVLAELEPGQIIKGTVKRLTNFGAFVDVGGIDGLV 507
Query: 215 PFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGS 266
S+IS + E L +G ++ +K +EV E+ R+ LS R+A D ++G G
Sbjct: 508 HISEISWHRIDNPGEVLSVGDEIEVKVIEVIPERERIGLSLRQAQPDPWTEVGQKFSAGD 567
Query: 267 VVIGTVQSLKPYGAFID-IGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VV G V + +GAF++ I G+ GL+H+SQ+++ V + V+Q GD +KV
Sbjct: 568 VVEGKVTRIVDFGAFVELIPGVEGLVHISQLANYHVKQPSEVVQQGDVVKV 618
>gi|402311628|ref|ZP_10830565.1| putative 30S ribosomal protein S1 [Lachnospiraceae bacterium ICM7]
gi|400371276|gb|EJP24237.1| putative 30S ribosomal protein S1 [Lachnospiraceae bacterium ICM7]
Length = 232
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/150 (42%), Positives = 95/150 (63%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPL 235
W+ ++ +E V K K+ KGG +A +E +R F+P SQ+S++ +E LGK L +
Sbjct: 31 WDVFEKMLAEKTVAKVKITEVVKGGCIAFLEEVRAFIPASQLSTQYVENLDEFLGKSLEV 90
Query: 236 KFVEVDEEQSRLVLSNR-----KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDIG-G 286
+ + + +LVLS+R +A + QA+L +G V+ G V S+K YGAFID+G G
Sbjct: 91 VVITSEPAKKKLVLSHRAIEKEEAKKERQAKLDSVKVGDVLEGKVDSIKDYGAFIDLGDG 150
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
I+GLLHVSQIS+ RV + A VL+ G+T+KV
Sbjct: 151 ISGLLHVSQISNQRVKNPAAVLKEGETVKV 180
>gi|331701405|ref|YP_004398364.1| RNA binding S1 domain-containing protein [Lactobacillus buchneri
NRRL B-30929]
gi|406026967|ref|YP_006725799.1| 30S ribosomal protein S1 [Lactobacillus buchneri CD034]
gi|329128748|gb|AEB73301.1| RNA binding S1 domain protein [Lactobacillus buchneri NRRL B-30929]
gi|405125456|gb|AFS00217.1| 30S ribosomal protein S1 [Lactobacillus buchneri CD034]
Length = 416
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 11/171 (6%)
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG ++ S +LS + ++ W+ + D + KV A KGG+V + G+RGFVP
Sbjct: 82 IGSDKEGGSFLLSSKRLETRKVWDELAEKSKNDETITAKVSQAVKGGLVVDA-GVRGFVP 140
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIG 265
S IS + + G++L LK +E+D ++RL+LS++ + +A+ L G
Sbjct: 141 ASMISDHYVDDLNQFKGQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQTLHEG 200
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
VV GTV L +GAF+D+GG++GL+HVSQI+++RV + VL+ G T+KV
Sbjct: 201 DVVEGTVARLTNFGAFVDLGGMDGLVHVSQIAYERVDKPSDVLKVGQTVKV 251
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/257 (29%), Positives = 131/257 (50%), Gaps = 23/257 (8%)
Query: 77 EGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDN-----RGALVDITAKSSAYLPTQE 131
EG SF L LE EL K K T +G LV + A ++P
Sbjct: 87 EGGSFLLS--SKRLETRKVWDELAEKSKNDETITAKVSQAVKGGLV-VDAGVRGFVPASM 143
Query: 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--ED 188
H +V++ G + E II + ++ L+LS + ++Q E A ER + +Q+ E
Sbjct: 144 ISDH---YVDDLNQFKGQELELKIIEIDPVENRLILSHKAIVQAEKAEEREKLMQTLHEG 200
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQ 244
VV+G V G ++ G+ G V SQI+ K + +G+ + +K + VD ++
Sbjct: 201 DVVEGTVARLTNFGAFVDLGGMDGLVHVSQIAYERVDKPSDVLKVGQTVKVKVLSVDFDR 260
Query: 245 SRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
+R+ LS ++ + + + + +GSV+ GTV+ L +GAF+++ G+ GL+H+SQI+H+
Sbjct: 261 NRISLSIKQTLPEPWDGIEEKAPVGSVLEGTVKRLVDFGAFVEVFPGVEGLVHISQIAHE 320
Query: 300 RVADIATVLQPGDTLKV 316
+ A VL+ G+ +KV
Sbjct: 321 HIDTPADVLKVGEKIKV 337
>gi|254477028|ref|ZP_05090414.1| ribosomal protein S1 [Ruegeria sp. R11]
gi|214031271|gb|EEB72106.1| ribosomal protein S1 [Ruegeria sp. R11]
Length = 559
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 6 SMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NP 61
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 62 GEAPEISVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 121
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 122 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 181
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 182 SRAEQRAEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILS 241
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 242 IGETVKV 248
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 97 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 149
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ SE V G V +
Sbjct: 150 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQAVDGVVKNITE 209
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 210 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQE 269
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D +G + SV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 270 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMS 315
>gi|326387158|ref|ZP_08208768.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
19370]
gi|326208339|gb|EGD59146.1| 30S ribosomal protein S1 [Novosphingobium nitrogenifigens DSM
19370]
Length = 566
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV +N A++D+ KS +P +E H G+ G + E +
Sbjct: 28 GRVVKGTVTAIENDKAVIDVGLKSEGRVPLREFAPPGQPH----GLKVGDEVEVYVDRVE 83
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW++ E V+G + G KGG +++G F+P SQ+
Sbjct: 84 NADGEAMLSRDRARREAAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDGAVAFLPGSQV 143
Query: 220 SSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ P + +++D + +V+S R + +++A+ L G ++
Sbjct: 144 DIRPVRDVQPLMDIPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSGLIQNLKEGQIID 203
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V+ GDT++V +
Sbjct: 204 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVRVQI 252
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 110/222 (49%), Gaps = 16/222 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+A +K + G +V+G +F G VD+ + A+LP + I ++ V+ +P
Sbjct: 100 AAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVQPLMDIP 158
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYEL-AWERCRQLQS--EDVVVKGKVVGANKGGVV 204
+ F I+ + ++V+S R + E A +R +Q+ E ++ G V G
Sbjct: 159 ---QPFQILKMDRRRGNIVVSRRAVLEETRAEQRSGLIQNLKEGQIIDGVVKNITDYGAF 215
Query: 205 AEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ- 259
++ G+ G + + +S K +G + ++ + ++++ R+ L ++ +D
Sbjct: 216 VDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVRVQIIRINQDTQRISLGMKQLESDPWE 275
Query: 260 ---AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
A+ +G+ + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 276 GVAAKYPVGAKLTGTVTNITEYGAFVELEAGIEGLVHVSEMS 317
>gi|399991696|ref|YP_006571936.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
gi|400753335|ref|YP_006561703.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
gi|398652488|gb|AFO86458.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis 2.10]
gi|398656251|gb|AFO90217.1| 30S ribosomal protein S1 [Phaeobacter gallaeciensis DSM 17395 = CIP
105210]
Length = 559
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 128/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 6 SMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NP 61
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 62 GEAPEISVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 121
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 122 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 181
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 182 SRAEQRAEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILS 241
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 242 IGETVKV 248
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + + +V+G +F G VD+ + A+LP + ++ V +A
Sbjct: 97 EEAWDRLEKAYADDQ---RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 149
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ SE V G V +
Sbjct: 150 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLSEGQAVDGVVKNITE 209
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 210 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQE 269
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D +G + SV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 270 DPWDLVGAKYPLSSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMS 315
>gi|227529193|ref|ZP_03959242.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
gi|227350918|gb|EEJ41209.1| 30S ribosomal protein S1 [Lactobacillus vaginalis ATCC 49540]
Length = 410
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 17/233 (7%)
Query: 99 LGTKVKGTVFC-TDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
+G VKG V D+R A+V I A +P +E ++ + +A V G + + V+I
Sbjct: 23 VGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKV-GDELDLVVI 81
Query: 157 ---GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
G ++ + S +LS R ++ W+ ++ + KV A KGG+V + G+RGF
Sbjct: 82 SKIGNDKENGSYLLSHRRLEARKVWDDVQKKFDAGEHITAKVTQAVKGGLVVDA-GVRGF 140
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRK--------AMADSQAQLG 263
VP S I+ + + G++L K +E++ ++RL+LS+++ A + A+L
Sbjct: 141 VPASMITDHYVEDLNQFKGQELEFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQ 200
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV G V + +GAFID+GG++GL+HVS+IS+D V + VL+ G +KV
Sbjct: 201 PGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISYDHVDKPSDVLEAGQEVKV 253
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 23/238 (9%)
Query: 92 KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE 151
K+D + KV V +G LV + A ++P H +VE+ G +
Sbjct: 112 KFDAGEHITAKVTQAV-----KGGLV-VDAGVRGFVPASMITDH---YVEDLNQFKGQEL 162
Query: 152 EFVIIGENEADDSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207
EF II +++ L+LS + I E A E +LQ DVV +GKV G ++
Sbjct: 163 EFKIIEIEPSENRLILSHKEIVQAQHEEAAKEIFAKLQPGDVV-EGKVARMTNFGAFIDL 221
Query: 208 EGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQ 259
G+ G V S+IS K + G+++ +K + VD E+ R+ LS ++ + D +
Sbjct: 222 GGVDGLVHVSEISYDHVDKPSDVLEAGQEVKVKVLNVDPERERISLSIKQTLPGPWDDIE 281
Query: 260 AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ GSV+ GTV+ L +GAF+++ G+ GL+H+SQISH +A A VL+PG +KV
Sbjct: 282 EKAPEGSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQISHKHIATPADVLKPGQEVKV 339
>gi|221195607|ref|ZP_03568661.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
gi|221184373|gb|EEE16766.1| 30S ribosomal protein S1 [Atopobium rimae ATCC 49626]
Length = 441
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 131/234 (55%), Gaps = 16/234 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEE 152
DFN G V GTV + L+DI KS +P +E I K VE + +V G + E
Sbjct: 30 DFNE--GDLVTGTVVKIERDEVLLDIGYKSEGVIPARELSIR--KDVEPSELVHMGDEIE 85
Query: 153 FVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+++ + + + LVLS + +YE +W+ + + V+G+V+ KGG++ ++ GLRG
Sbjct: 86 ALVLQKEDKEGRLVLSKKRAEYERSWKAVEEKFNAGETVEGEVIEVVKGGLILDI-GLRG 144
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQL 262
F+P S + + + +G + + +E+D ++ +VLS R + +++ +L
Sbjct: 145 FLPASLVDLRRVKDLSTFMGTRIEARVIEMDRNRNNVVLSRRVVLEEARKAERQDILGKL 204
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G ++V
Sbjct: 205 KVGMKLQGTVSSIVEFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGQEVEV 258
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 61/239 (25%), Positives = 119/239 (49%), Gaps = 29/239 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
FN+ G V+G V G ++DI + +LP A + ++ V++ G + E
Sbjct: 118 FNA--GETVEGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLSTFMGTRIEAR 170
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE------ 208
+I + +++VLS R++ E R+ + +D++ K KV +G V + VE
Sbjct: 171 VIEMDRNRNNVVLSRRVV-----LEEARKAERQDILGKLKVGMKLQGTVSSIVEFGAFVD 225
Query: 209 --GLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--- 259
G+ G V S++S +G+++ ++ ++VD + R+ L ++ D
Sbjct: 226 LGGIDGLVHISELSWNHVNHPSEVVKVGQEVEVQVLDVDLNRERISLGLKQTTEDPWRVL 285
Query: 260 -AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
++ + ++V GTV L +GAF+D+G G+ GL+H+S+++ V + V GD ++V
Sbjct: 286 VSKFPVDAIVEGTVTKLVTFGAFVDLGDGVEGLVHISEMAKQHVTAPSQVCTVGDKVQV 344
>gi|77406676|ref|ZP_00783718.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
gi|77174717|gb|EAO77544.1| ribosomal protein S1 [Streptococcus agalactiae H36B]
Length = 358
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 32 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 89
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 90 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 149
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 150 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 185
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A +++ S VV GKV G ++ G+ G V
Sbjct: 118 DAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVH 177
Query: 216 FSQISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 178 VTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDV 237
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 238 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 287
>gi|225870666|ref|YP_002746613.1| 30S ribosomal protein S1 [Streptococcus equi subsp. equi 4047]
gi|225700070|emb|CAW94132.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp. equi
4047]
Length = 400
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLIGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ Q L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEEAAKQARDKVFSTLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELA---WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A ++ SE VV G V G ++ G+ G V
Sbjct: 162 DAAENRFILSRREVVEEAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGVDGLVH 221
Query: 216 FSQISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 222 VTELSHERNVSPKSVVSVGEEVEVKVLALDEEAGRVSLSLKATTPGPWDGVEQKLAQGDV 281
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 282 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTV 331
>gi|366165634|ref|ZP_09465389.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding
domain protein [Acetivibrio cellulolyticus CD2]
Length = 685
Score = 103 bits (257), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 126/243 (51%), Gaps = 11/243 (4%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
F A EK G V G V ++ VD+ KS +P +E +E + I
Sbjct: 295 FADAFEKSMVTLRDGDVVTGKVIGFNSNEIFVDLGYKSDGIIPIEEYTDEPDFKIE-SEI 353
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
G K E + N+ + +++LS + + +W+ + + ++ VV GGV+A
Sbjct: 354 KVGDKIEVYVKRVNDGEGNVLLSKKHLDSLKSWDEIIKAYEDKTPIRAIVVDVVNGGVIA 413
Query: 206 EVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--- 260
+G+R FVP SQIS K E E L K + ++ +E ++++ +LV S R + + +A
Sbjct: 414 SAKGVRIFVPASQISDKFVKELNEFLKKPINVRIIEYNDKKRKLVGSARVLLEEEKAKKS 473
Query: 261 -----QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
++ +G + G V+SL +G F+DIGG++GL+H+S++S R+ + V++ GD ++
Sbjct: 474 KAFWDEVEVGKIYSGVVKSLTDFGVFVDIGGVDGLIHISELSWSRIKHPSEVVKVGDKVQ 533
Query: 316 VCL 318
V +
Sbjct: 534 VSI 536
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 12/169 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK---GKVVGANKGGVVAEVEGLR 211
II N+ LV S R++ E ++ + E V K G V GV ++ G+
Sbjct: 447 IIEYNDKKRKLVGSARVLLEEEKAKKSKAFWDEVEVGKIYSGVVKSLTDFGVFVDIGGVD 506
Query: 212 GFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLG 263
G + S++S K +E + +G + + +E +E+ ++ L RK + +
Sbjct: 507 GLIHISELSWSRIKHPSEVVKVGDKVQVSILEFKKEKGKISLGYRKTEDNPWVKASEKYK 566
Query: 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPG 311
+G VV V P+G F+++ GI+GL+H+SQIS R+A VL G
Sbjct: 567 VGDVVNVKVLRFAPFGTFVELEEGIDGLVHISQISSKRLAKPEDVLTAG 615
>gi|89053212|ref|YP_508663.1| 30S ribosomal protein S1 [Jannaschia sp. CCS1]
gi|88862761|gb|ABD53638.1| SSU ribosomal protein S1P [Jannaschia sp. CCS1]
Length = 558
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E ++ ++ + G+ VKG V + A++D+ K + +E
Sbjct: 6 MEEFEALLNESFEIDTPDEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NPG 61
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E I G + E + A VLS M + E AW+R + + + V+G + G K
Sbjct: 62 EAPSIEVGDEVEVYLRNVENARGEAVLSHEMARREAAWDRLEKAYAAEERVEGAIFGRVK 121
Query: 201 GGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +S
Sbjct: 122 GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEES 181
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G VV G V+++ YGAF+D+GG++GLLHV+ ++ RV D +L
Sbjct: 182 RAEQRAEVIGKLNEGDVVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNDPKEILTI 241
Query: 311 GDTLKV 316
G+T+KV
Sbjct: 242 GETVKV 247
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 110/208 (52%), Gaps = 16/208 (7%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 111 RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDRR 166
Query: 162 DDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R I E E+ ++ +E VV G V + G ++ G+ G + +
Sbjct: 167 RGNIVVSRRAILEESRAEQRAEVIGKLNEGDVVDGVVKNITEYGAFVDLGGVDGLLHVTD 226
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
++ + + +E+L G+ + ++ ++V++E R+ L ++ D A+ + +V G
Sbjct: 227 MAWRRVNDPKEILTIGETVKVQVIKVNKETHRISLGMKQLQDDPWDAVAAKYALDTVHTG 286
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 287 RVTNITDYGAFVELEAGVEGLVHVSEMS 314
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 99/229 (43%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE-EFVIIG 157
L T G V + GA V++ A + E K K+V IV +E E +++
Sbjct: 280 LDTVHTGRVTNITDYGAFVELEAGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLE 338
Query: 158 ENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ + L L+ WE + E V+G+V + G+ +EG + G V
Sbjct: 339 IDTVKRRVSLGLKQTMRN-PWEVFAESHPEGTQVEGEVKNITEFGLFVGLEGEIDGMVHL 397
Query: 217 SQISSKSTAEELLGK----DLPLKFV-EVDEEQSRLVLSNRKAMADSQAQL--GI--GSV 267
S ++ + E+++G+ D+ V EVD ++ R+ LS + D + G+ GS+
Sbjct: 398 SDLTWEGRGEDMIGEFRKGDIVKAVVTEVDTDKERISLSIKAVDGDPFGETIEGVKRGSI 457
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ V +++ G +D G+ + S +S DR Q GD L V
Sbjct: 458 ITVEVTAIEDGGIEVDYEGMKSFIRRSDLSRDRSEQRPERFQVGDKLDV 506
>gi|325262655|ref|ZP_08129392.1| 40S ribosomal protein S1 [Clostridium sp. D5]
gi|324032487|gb|EGB93765.1| 40S ribosomal protein S1 [Clostridium sp. D5]
Length = 231
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/151 (41%), Positives = 93/151 (61%), Gaps = 13/151 (8%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL---LGKDLP 234
W R + ++ KV G GG +A VEGLRGF+P S++S S E+L L KD+
Sbjct: 33 WNRVMDYMEKKTILPVKVEGVVNGGAIAMVEGLRGFIPASKLSL-SYIEDLETYLLKDIE 91
Query: 235 LKFVEVDEEQSRLVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-G 285
++ ++VD+ +RLVLS R +A A+ A + G+V+ GTV++L+ YGAFI +
Sbjct: 92 VRVIDVDQANNRLVLSAREILKEKEQQARAEQIASIKTGTVMEGTVETLQNYGAFIKLDN 151
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GL+H+SQIS R+ VL+ GDT+KV
Sbjct: 152 GLSGLVHISQISQKRIKTPGEVLKVGDTVKV 182
>gi|339635169|ref|YP_004726810.1| 30S ribosomal protein S1P [Weissella koreensis KACC 15510]
gi|420161165|ref|ZP_14667936.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
gi|338854965|gb|AEJ24131.1| SSU ribosomal protein S1P [Weissella koreensis KACC 15510]
gi|394745915|gb|EJF34733.1| ribosomal protein S1 [Weissella koreensis KCTC 3621]
Length = 432
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 99/163 (60%), Gaps = 10/163 (6%)
Query: 164 SLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKS 223
S +LS R ++ AWE +ED +V+ V KGG+V +V G+RGF+P S I ++
Sbjct: 89 SWILSKRQLEARRAWEEIASKYNEDDIVEAPVTQVVKGGLVVDVAGVRGFIPASMIENRF 148
Query: 224 TAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQ 273
+ + G+ + + +E++ +SRL+LS + ++ +++ L +G +V G V
Sbjct: 149 VQDLNQYKGQTVKAQIIEINVAESRLILSRKAVLSAERSEALKRVFEELTVGDIVEGKVA 208
Query: 274 SLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ +GAFID+GG++GL+HVS+IS++RV+ + VL G+ +KV
Sbjct: 209 RMTNFGAFIDLGGVDGLVHVSEISYERVSQPSDVLSVGEDVKV 251
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 67/219 (30%), Positives = 117/219 (53%), Gaps = 21/219 (9%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172
+G LV A ++P A + + + V++ G + II N A+ L+LS + +
Sbjct: 125 KGGLVVDVAGVRGFIP---ASMIENRFVQDLNQYKGQTVKAQIIEINVAESRLILSRKAV 181
Query: 173 QYELAWERCRQLQS--EDV----VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE 226
L+ ER L+ E++ +V+GKV G ++ G+ G V S+IS + ++
Sbjct: 182 ---LSAERSEALKRVFEELTVGDIVEGKVARMTNFGAFIDLGGVDGLVHVSEISYERVSQ 238
Query: 227 EL----LGKDLPLKFVEVDEEQSRLVLS---NRKAMADSQAQLGI-GSVVIGTVQSLKPY 278
+G+D+ +K + +D E+ R+ LS + DS AQ G+V+ GTV+ + +
Sbjct: 239 PSDVLSVGEDVKVKVLGLDPEKERISLSIKATQPGPWDSAAQNAPEGTVLEGTVRRVVDF 298
Query: 279 GAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GAF+++ G+ GL+HVSQISH V + + VL+ GD ++V
Sbjct: 299 GAFVEVFPGVEGLVHVSQISHQHVENPSDVLKAGDKVQV 337
>gi|302389719|ref|YP_003825540.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
oceani DSM 16646]
gi|302200347|gb|ADL07917.1| hydroxymethylbutenyl pyrophosphate reductase [Thermosediminibacter
oceani DSM 16646]
Length = 672
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 132/250 (52%), Gaps = 19/250 (7%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131
+ ME +S +E + D SEL G V+GTV ++ LV++ KS +P E
Sbjct: 270 SKMEEISREMENQQGEVAYEDGISELAEGKIVEGTVVKVSDKEVLVNVGHKSDGIIPLNE 329
Query: 132 ACIHKIKHVEEAGIVPG---LKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSED 188
+ + + IV +K + + + +NE + L+LS + AW + +
Sbjct: 330 --LSNLPFSSPSEIVKTGDRIKVQILKLEDNEGN--LILSKKRADVIEAWRYLEEAFEKK 385
Query: 189 VVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSR 246
V+G+V+ + KGG++ V+G+RGF+P S K A+ +GKDL LK +E+D ++ R
Sbjct: 386 QTVEGRVIESIKGGLLVNVKGVRGFIPASHADLKYVADLSVYVGKDLKLKVIELDRDKKR 445
Query: 247 LVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+VLS++ K + ++ G V+ GTV+ L +GAF+DIGG +GL+H+S +S
Sbjct: 446 VVLSHKLFLQEEKEKLKEEIWEKVKEGQVIRGTVRKLTDFGAFVDIGGYDGLIHISDLSW 505
Query: 299 DRVADIATVL 308
RV + VL
Sbjct: 506 QRVNHPSEVL 515
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 76/136 (55%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V++G V G ++ G G + S +S + + E+L +++ +K ++VD+E+
Sbjct: 474 VIRGTVRKLTDFGAFVDIGGYDGLIHISDLSWQRVNHPSEVLSENQEVDVKVLKVDKERG 533
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ L ++ D + + IG VV G V L +GAF+++ G+ GL+HVSQIS R
Sbjct: 534 RISLGLKQLTPDPWENIEQKYAIGQVVQGKVVKLTNFGAFVELEPGVEGLVHVSQISKKR 593
Query: 301 VADIATVLQPGDTLKV 316
VA VL+ G+T+KV
Sbjct: 594 VATPKDVLKEGETIKV 609
>gi|300778889|ref|ZP_07088747.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
gi|300504399|gb|EFK35539.1| 30S ribosomal protein S1 [Chryseobacterium gleum ATCC 35910]
Length = 596
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 22/268 (8%)
Query: 62 QLFEEAYERCRTAPMEGVSFTLEE-FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
Q +++E A LEE ++ +L D N L KV V TD + A+VDI
Sbjct: 20 QFDWDSFESGLDADARKEKSDLEEIYNGSLNNLDDNDVLIGKV---VRLTD-KEAIVDIN 75
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
KS + E ++ G+ G + E ++ + L LS R + AW++
Sbjct: 76 FKSEGVISLNEFRYNQ-------GLKVGDEVEVMVDKREDKTGQLQLSHRKARTLKAWDK 128
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFV 238
+L +V G V KGG++ +V G+ F+P SQI K ++ +GK + K V
Sbjct: 129 VNELHETGEIVNGFVKSRTKGGMIVDVHGIEAFLPGSQIDVKPIKDYDQFVGKTMEFKVV 188
Query: 239 EVDEEQSRLVLSNRKAM-ADSQ-------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGL 290
+++ E +V+S++ + AD + AQL G V+ GTV+++ YG FID+GG++GL
Sbjct: 189 KINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLEGTVKNITSYGVFIDLGGVDGL 248
Query: 291 LHVSQISHDRVADIATVLQPGDTLKVCL 318
+H++ +S RV + +L+ G T+KV +
Sbjct: 249 IHITDLSWSRVNHPSEILEDGQTVKVVI 276
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
A +K + E G V G V G +VD+ A+LP + + IK ++ G
Sbjct: 125 AWDKVNELHETGEIVNGFVKSRTKGGMIVDVHG-IEAFLPGSQIDVKPIKDYDQ---FVG 180
Query: 149 LKEEFVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVV 204
EF ++ N ++V+S + +I+ ++ ++ QL+ V+ +G V GV
Sbjct: 181 KTMEFKVVKINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVL-EGTVKNITSYGVF 239
Query: 205 AEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-- 258
++ G+ G + + +S + E+L G+ + + ++ D+E++R+ L ++ A
Sbjct: 240 IDLGGVDGLIHITDLSWSRVNHPSEILEDGQTVKVVILDFDDEKTRIQLGMKQLEAHPWD 299
Query: 259 --QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
A L +G V G V L YGAF++I G+ GL+HVS++S
Sbjct: 300 ALSADLKVGDKVKGKVVVLADYGAFVEIAPGVEGLIHVSEMS 341
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 75/140 (53%), Gaps = 12/140 (8%)
Query: 191 VKGKVVG-ANKGGVVAEVEGLRGFVPFSQISSKS---TAEELL--GKDLPLKFVEVDEEQ 244
VKGKVV A+ G V G+ G + S++S + +A + + G ++ + + +D E+
Sbjct: 311 VKGKVVVLADYGAFVEIAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREE 370
Query: 245 SRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH- 298
++ L ++ D +A+ +GS +GTV++ +G F+++ GI+GL+++S +S
Sbjct: 371 RKISLGIKQLSKDPWENIEAKYPVGSQHVGTVRNFTNFGVFVELEEGIDGLIYISDLSWT 430
Query: 299 DRVADIATVLQPGDTLKVCL 318
++ + GD L V +
Sbjct: 431 KKIKHPSEFCAVGDKLDVVV 450
>gi|225868407|ref|YP_002744355.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus]
gi|414564171|ref|YP_006043132.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
gi|225701683|emb|CAW99009.1| putative 30S ribosomal protein S1 [Streptococcus equi subsp.
zooepidemicus]
gi|338847236|gb|AEJ25448.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus
ATCC 35246]
Length = 400
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLIGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ Q L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEEAAKQARDKVFSTLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELA---WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A ++ SE VV G V G ++ G+ G V
Sbjct: 162 DAAENRFILSRREVVEEAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGVDGLVH 221
Query: 216 FSQISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 222 VTELSHERNVSPKSVVSVGEEVEVKVLALDEEAGRVSLSLKATTPGPWDGVEQKLAQGDV 281
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 282 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLTVGQEVTV 331
>gi|225019196|ref|ZP_03708388.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
DSM 5476]
gi|224948048|gb|EEG29257.1| hypothetical protein CLOSTMETH_03149 [Clostridium methylpentosum
DSM 5476]
Length = 663
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 118/227 (51%), Gaps = 11/227 (4%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++KG + VDI K S ++P E E+ + G + + V++ N
Sbjct: 305 GKRIKGVITSIAKNEVQVDIGGKQSGFIPASELSDDPNMKPEDI-VSKGEELDLVVLKVN 363
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ D + LS + + E +E + E+ + G + +GG + G++ F+P SQ+
Sbjct: 364 DQDGIVTLSKKRLDAEKGFEEIITAKDENKTMTGVITDVVRGGALVLTNGVKIFIPISQL 423
Query: 220 SSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVVI 269
S + AEE L K++ K +EV+ + R V S R + +++ A + IG
Sbjct: 424 SDRRVENAEEFLKKEVEFKIIEVNPSRKRAVASVRALLNEAKKAKAEEFWASVEIGKTYT 483
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+SL YGAF+D+GG++G++H++++S ++ + +++ GD ++V
Sbjct: 484 GTVKSLTDYGAFVDLGGVDGMIHITELSWTKIKHPSDIVKVGDVVEV 530
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 19/213 (8%)
Query: 113 RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEE--FVIIGENEADDSLVLSLR 170
RG + +T ++P + ++++ EE LK+E F II N + V S+R
Sbjct: 404 RGGALVLTNGVKIFIPISQLSDRRVENAEEF-----LKKEVEFKIIEVNPSRKRAVASVR 458
Query: 171 MIQYELAWERCRQLQSEDVVVK---GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE 227
+ E + + + + K G V G ++ G+ G + +++S
Sbjct: 459 ALLNEAKKAKAEEFWASVEIGKTYTGTVKSLTDYGAFVDLGGVDGMIHITELSWTKIKHP 518
Query: 228 ----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYG 279
+G + + ++D+E+ ++ L RK+ + + + VV T+ SL +G
Sbjct: 519 SDIVKVGDVVEVYVKDIDQEKKKISLGYRKSEDNPWEIFKKDYAVDQVVNVTIVSLTQFG 578
Query: 280 AFIDI-GGINGLLHVSQISHDRVADIATVLQPG 311
AF +I G++GL+H+SQI++ +A ++ VL G
Sbjct: 579 AFAEIIPGVDGLIHISQIANQHIAKVSDVLSVG 611
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 90/203 (44%), Gaps = 15/203 (7%)
Query: 59 ELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVD 118
E+N + A R E EEF +++E +G GTV + GA VD
Sbjct: 445 EVNPSRKRAVASVRALLNEAKKAKAEEFWASVE-------IGKTYTGTVKSLTDYGAFVD 497
Query: 119 ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAW 178
+ + E KIKH + V + E +V + E + L R + + W
Sbjct: 498 LGG-VDGMIHITELSWTKIKHPSDIVKVGDVVEVYVKDIDQEK-KKISLGYRKSE-DNPW 554
Query: 179 ERCRQLQSEDVVVKGKVVGANKGGVVAE-VEGLRGFVPFSQISSKSTAE--ELL--GKDL 233
E ++ + D VV +V + G AE + G+ G + SQI+++ A+ ++L G+ +
Sbjct: 555 EIFKKDYAVDQVVNVTIVSLTQFGAFAEIIPGVDGLIHISQIANQHIAKVSDVLSVGQKV 614
Query: 234 PLKFVEVDEEQSRLVLSNRKAMA 256
K E+D ++ R+ LS R ++
Sbjct: 615 DAKITEIDVDKKRISLSMRALLS 637
>gi|195978262|ref|YP_002123506.1| 30S ribosomal protein S1 [Streptococcus equi subsp. zooepidemicus
MGCS10565]
gi|195974967|gb|ACG62493.1| SSU ribosomal protein Rps1 [Streptococcus equi subsp. zooepidemicus
MGCS10565]
Length = 400
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 57/156 (36%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLIGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ Q L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEEAAKQARDKVFSTLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 86/170 (50%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELA---WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A ++ SE VV G V G ++ G+ G V
Sbjct: 162 DAAENRFILSRREVVEEAAKQARDKVFSTLSEGSVVTGTVARLTSFGAFIDLGGVDGLVH 221
Query: 216 FSQISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 222 VTELSHERNVSPKSVVSVGEEVEVKVLALDEEAGRVSLSLKATTPGPWDGVEQKLAQGDV 281
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + +L G + V
Sbjct: 282 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDMLTVGQEVTV 331
>gi|399057831|ref|ZP_10744260.1| ribosomal protein S1 [Novosphingobium sp. AP12]
gi|398041579|gb|EJL34635.1| ribosomal protein S1 [Novosphingobium sp. AP12]
Length = 573
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ +N A++D+ KS + +E + E+ G+ G + E +
Sbjct: 30 GRVVKGTITAIENDKAVIDVGLKSEGRVSLREFA----RGEEDHGLKVGDEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW++ E V+G + G KGG +++G F+P SQ+
Sbjct: 86 NADGEAMLSRDRARREAAWDKLENEFGEGKRVEGVIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ P + +++D + +V+S R + +++A+ L G V+
Sbjct: 146 DIRPVRDVTPLMDVPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVID 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V+ GDT+KV +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQI 254
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 107/222 (48%), Gaps = 16/222 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+A +K + G +V+G +F G VD+ + A+LP + I ++ V VP
Sbjct: 102 AAWDKLENEFGEGKRVEGVIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVTPLMDVP 160
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVV 204
+ F I+ + ++V+S R + E E+ +L SE V+ G V G
Sbjct: 161 ---QPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVIDGVVKNITDYGAF 217
Query: 205 AEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD--- 257
++ G+ G + + +S K +G + ++ + ++ E R+ L ++ +D
Sbjct: 218 VDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQIIRINSETQRISLGMKQLESDPWE 277
Query: 258 -SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ + +G+ + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 278 GAAVKYPVGAKLSGTVTNITEYGAFVELEAGIEGLVHVSEMS 319
>gi|374324516|ref|YP_005077645.1| RNA binding s1 domain-containing protein [Paenibacillus terrae
HPL-003]
gi|357203525|gb|AET61422.1| RNA binding s1 domain protein [Paenibacillus terrae HPL-003]
Length = 408
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/227 (33%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ ++ A+V I K +P +E + + EEA + G + E II +
Sbjct: 28 GDTVKGTIVKLEDNQAVVSIGYKYDGIIPIRELS-SGLDNAEEA-VQVGQEVEARIISID 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + LVLS R I E AWE+ QL V + V KGG+V +V GLRGF+P S +
Sbjct: 86 DGKEKLVLSKRAIDSENAWEKLEQLFESKEVFEVVVNDVVKGGIVVDV-GLRGFIPASMV 144
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--------QAQLGIGSVVI 269
+ + G+ L + E+D E ++++LS + + A+L G ++
Sbjct: 145 ERHFVEDFSDYKGRTLRVVVKELDRENNKVILSQKDVLEAEFEANKLKVMAELKEGQEIV 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTVQ L +GAF+D+GG++GL+HVS+I+ V + + G +KV
Sbjct: 205 GTVQRLTQFGAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSEGQQVKV 251
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 69/129 (53%), Gaps = 15/129 (11%)
Query: 202 GVVAEVEGLRGFVPFSQIS-------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G +V G+ G V S+I+ S + +E G+ + +K ++VD E+ ++ LS + A
Sbjct: 214 GAFVDVGGVDGLVHVSEIAWTHVDKPSDAVSE---GQQVKVKVLKVDPEKGKISLSMKAA 270
Query: 255 MA----DSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQ 309
+ Q G VV G V+ L +GAF++I G+ GL+H+SQISH + VL+
Sbjct: 271 QPGPWESAAGQFNNGDVVTGVVKRLVNFGAFVEIASGVEGLVHISQISHKHIGTPQEVLE 330
Query: 310 PGDTLKVCL 318
G +KV +
Sbjct: 331 EGQEVKVKI 339
>gi|291550880|emb|CBL27142.1| Ribosomal protein S1 [Ruminococcus torques L2-14]
Length = 231
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 93/150 (62%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPL 235
W R + + V+ K+ G GGV+ VEGLRGFVP S++S E+ L KD+ +
Sbjct: 30 WNRVQDYMDKKTVLPVKIEGVVNGGVIVMVEGLRGFVPASKLSLSYIENLEDYLLKDIEV 89
Query: 236 KFVEVDEEQSRLVLSNR-------KAMADSQ-AQLGIGSVVIGTVQSLKPYGAFIDI-GG 286
+ ++VD+ +RLVLS R KA D+Q A + +G+V+ GTV++L+ YGAF+ + G
Sbjct: 90 QVIDVDQANNRLVLSARELLKEKEKAARDAQIASMKVGTVLKGTVETLQNYGAFVKLENG 149
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
++GL+HVSQIS R+ + VL GD ++V
Sbjct: 150 LSGLVHVSQISQKRIKMPSDVLTVGDEVEV 179
>gi|389865030|ref|YP_006367271.1| 30S ribosomal protein S1 [Modestobacter marinus]
gi|388487234|emb|CCH88792.1| 30S ribosomal protein S1 [Modestobacter marinus]
Length = 489
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 137/249 (55%), Gaps = 20/249 (8%)
Query: 82 TLEEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKI 137
T E+F +A++ KY FN G V+G + D L+DI K+ +P++E I H +
Sbjct: 21 TAEDFLAAIDQTIKY-FND--GDIVEGVIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDV 77
Query: 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVG 197
E + G + E +++ + + + L+LS + QYE AW + D VV G V+
Sbjct: 78 DPTEVVKV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEAKKEADEVVVGTVIE 135
Query: 198 ANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAM 255
KGG++ ++ GLRGF+P S + + + +G++L K +E+D+ ++ +VLS R+ +
Sbjct: 136 VVKGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGRELEAKIIELDKNRNNVVLSRRQWL 194
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V
Sbjct: 195 EQTQSEVRSEFLNKLAKGQVRTGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEV 254
Query: 308 LQPGDTLKV 316
++ G + V
Sbjct: 255 VEVGQEVTV 263
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 226 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDLDRERVSLSLKATQED 285
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGD 312
Q IG VV G V L P+GAF+ + GI GL+H+S+++ V V+Q GD
Sbjct: 286 PWRQFARTHQIGQVVPGKVTKLVPFGAFVRVDEGIEGLVHISELAERHVEIPEQVVQVGD 345
Query: 313 TLKV 316
+ V
Sbjct: 346 EILV 349
>gi|332686551|ref|YP_004456325.1| 30S ribosomal protein S1 [Melissococcus plutonius ATCC 35311]
gi|332370560|dbj|BAK21516.1| SSU ribosomal protein S1p [Melissococcus plutonius ATCC 35311]
Length = 408
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 136/267 (50%), Gaps = 33/267 (12%)
Query: 64 FEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
+++ E+ A ME +++E +G VKG V +++ +V I
Sbjct: 4 YKDKQEKSENATMEEAINSVQEV-----------TIGDIVKGEVLAIEDKQIIVGIEGTG 52
Query: 124 -SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII---GENEADDSLVLSLRMIQYELAWE 179
+P +E ++++ + + G K + V+I G+++ + + +LS R + + WE
Sbjct: 53 IEGIVPAKELSTSYVENINDF-VKIGDKLDLVVISSIGKDKENGNYLLSKRRLDAKKVWE 111
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKF 237
E+ +++ V KGG+V +V G+RGFVP S + S E GK L +K
Sbjct: 112 EIEADFKEERIIEAPVTDIVKGGLVVDV-GVRGFVPASMVEDHFVSDFSEYKGKTLAVKI 170
Query: 238 VEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGING 289
+E++ ++RL+LS++ + + +A L G +V G + L +GAFID+GGI+G
Sbjct: 171 IEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLGGIDG 230
Query: 290 LLHVSQISHDRVADIATVLQPGDTLKV 316
L+HVS+I+H+ V +P DTL +
Sbjct: 231 LVHVSEIAHNHVD------KPSDTLTI 251
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
+V+GK+ G ++ G+ G V S+I+ K + +G+D+ +K + ++ ++
Sbjct: 208 IVEGKIARLTDFGAFIDLGGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEG 267
Query: 246 RLVLSNRK----AMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS ++ A + + + +GS++ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 268 RISLSIKETLPGAWTNIEEKAPVGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 327
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD ++V
Sbjct: 328 IATPHEVLHEGDDIQV 343
>gi|84500258|ref|ZP_00998524.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
gi|84392192|gb|EAQ04460.1| 30S ribosomal protein S1 [Oceanicola batsensis HTCC2597]
Length = 553
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/246 (29%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E ++ ++ + G+ VKG V + A+VD+ K + +E
Sbjct: 1 MEEFEALLNESFEMDTPQEGSVVKGKVIAIEAGQAIVDVGYKMEGRVDLKEFA----NPG 56
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E I G + E + A V+S M + E AW+R + ++D V+G + G K
Sbjct: 57 ETPEITVGDEVEVYLRAAENARGEAVVSREMARREEAWDRLEKAYADDARVEGAIFGRVK 116
Query: 201 GGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +S
Sbjct: 117 GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEES 176
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 177 RAEQRAEVIANLEEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSI 236
Query: 311 GDTLKV 316
G+T+KV
Sbjct: 237 GETVKV 242
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 108/209 (51%), Gaps = 16/209 (7%)
Query: 101 TKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 105 ARVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDR 160
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
++V+S R I E E+ ++ + E V G V + G ++ G+ G + +
Sbjct: 161 RRGNIVVSRRAILEESRAEQRAEVIANLEEGQAVDGVVKNITEYGAFVDLGGVDGLLHVT 220
Query: 218 QISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVI 269
++ + + E+L G+ + ++ +++++E R+ L ++ D A+ + SV
Sbjct: 221 DMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPWDLVAAKYPLSSVHQ 280
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 281 GRVTNITDYGAFVELEPGVEGLVHVSEMS 309
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 96/224 (42%), Gaps = 13/224 (5%)
Query: 104 KGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE-EFVIIGENEAD 162
+G V + GA V++ + E K K+V IV +E E +++ + A
Sbjct: 280 QGRVTNITDYGAFVELEPGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVEVMVLEIDGAK 338
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISS 221
+ L L+ Q WE + E VV+G+V + G+ ++G + G V S +S
Sbjct: 339 RRVSLGLKQTQRN-PWEVFAETHPEGTVVEGEVKNITEFGLFVGLDGDIDGMVHLSDLSW 397
Query: 222 KSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSVVIGTV 272
E+ + G + EVD E+ R+ LS + D ++A G+ GS++ V
Sbjct: 398 DERGEDAIQSYRKGDMVQAVVSEVDTEKERISLSIKNVGGDKFAEAVGGVKRGSIITVEV 457
Query: 273 QSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+++ G ++ G+ + S +S DR GD + V
Sbjct: 458 TAIEDGGIEVEYEGMKSFIRRSDLSRDRSEQRPERFSVGDKVDV 501
>gi|254556749|ref|YP_003063166.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
gi|300767480|ref|ZP_07077392.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308180692|ref|YP_003924820.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|380032672|ref|YP_004889663.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
gi|418275432|ref|ZP_12890755.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448821382|ref|YP_007414544.1| 30S ribosomal protein S1 [Lactobacillus plantarum ZJ316]
gi|254045676|gb|ACT62469.1| 30S ribosomal protein S1 [Lactobacillus plantarum JDM1]
gi|300495299|gb|EFK30455.1| 40S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|308046183|gb|ADN98726.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|342241915|emb|CCC79149.1| 30S ribosomal protein S1 [Lactobacillus plantarum WCFS1]
gi|376008983|gb|EHS82312.1| 30S ribosomal protein S1 [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448274879|gb|AGE39398.1| 30S ribosomal protein S1 [Lactobacillus plantarum ZJ316]
Length = 429
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 17/235 (7%)
Query: 99 LGTKVKGTVFC-TDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI- 155
+G VKG V D++ +V I +P +E ++ V EA V + + VI
Sbjct: 25 VGDVVKGEVLAIDDDKQVIVGIQGTGVEGVVPLKELSTQRVDDVNEAAKVGDVLDLVVIS 84
Query: 156 -IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IG ++ + S +LS R ++ W+ + +K V KGG+V + G+RGF+
Sbjct: 85 RIGSDKENGSYLLSHRRLEARKVWDDVEKEYEAGHTIKAPVTQVVKGGLVVDA-GVRGFI 143
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S I + G++L LK +E++ ++RL+LS+R A+ + Q + L
Sbjct: 144 PASMIDDHYVEDLNAYKGQELELKIIEIEPSENRLILSHR-AVVEKQREAQREEALKTLQ 202
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V L +GAF+D+GGI+GL+HVS+IS++RV A VL+ G + V +
Sbjct: 203 AGDVVEGKVARLTNFGAFVDLGGIDGLVHVSEISYERVEKPADVLKVGQEVTVKI 257
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 116/232 (50%), Gaps = 19/232 (8%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
E G +K V G +VD A ++P H +VE+ G + E II
Sbjct: 116 EAGHTIKAPVTQVVKGGLVVD--AGVRGFIPASMIDDH---YVEDLNAYKGQELELKIIE 170
Query: 158 ENEADDSLVLSLRMI---QYELAWERC-RQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ L+LS R + Q E E + LQ+ DVV +GKV G ++ G+ G
Sbjct: 171 IEPSENRLILSHRAVVEKQREAQREEALKTLQAGDVV-EGKVARLTNFGAFVDLGGIDGL 229
Query: 214 VPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIG 265
V S+IS + + +G+++ +K + VD ++ R+ LS + + + + + G
Sbjct: 230 VHVSEISYERVEKPADVLKVGQEVTVKILSVDADRERVSLSIKATLPEPWDGIEEKAPQG 289
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+V+ G V+ L +GAF+++ G+ GL+H+SQISH +A VL+ G +KV
Sbjct: 290 AVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHQHIATPNDVLKVGQEIKV 341
>gi|379727435|ref|YP_005319620.1| 30S ribosomal protein S1p [Melissococcus plutonius DAT561]
gi|376318338|dbj|BAL62125.1| 30S ribosomal protein S1p [Melissococcus plutonius DAT561]
Length = 408
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/267 (28%), Positives = 136/267 (50%), Gaps = 33/267 (12%)
Query: 64 FEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKS 123
+++ E+ A ME +++E +G VKG V +++ +V I
Sbjct: 4 YKDKQEKSENATMEEAINSVQEV-----------TIGDIVKGEVLAIEDKQIIVGIEGTG 52
Query: 124 -SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII---GENEADDSLVLSLRMIQYELAWE 179
+P +E ++++ + + G K + V+I G+++ + + +LS R + + WE
Sbjct: 53 IEGIVPAKELSTSYVENINDF-VKIGDKLDLVVISSIGKDKENGNYLLSKRRLDAKKVWE 111
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKF 237
E+ +++ V KGG+V +V G+RGFVP S + S E GK L +K
Sbjct: 112 EIEADFKEERIIEAPVTDIVKGGLVVDV-GVRGFVPASMVEDHFVSDFSEYKGKTLAVKI 170
Query: 238 VEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGING 289
+E++ ++RL+LS++ + + +A L G +V G + L +GAFID+GGI+G
Sbjct: 171 IEIEPSENRLILSHKAVVENDKAAKKVEIMDHLHAGDIVEGKIARLTDFGAFIDLGGIDG 230
Query: 290 LLHVSQISHDRVADIATVLQPGDTLKV 316
L+HVS+I+H+ V +P DTL +
Sbjct: 231 LVHVSEIAHNHVD------KPSDTLTI 251
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQIS----SKSTAEELLGKDLPLKFVEVDEEQS 245
+V+GK+ G ++ G+ G V S+I+ K + +G+D+ +K + ++ ++
Sbjct: 208 IVEGKIARLTDFGAFIDLGGIDGLVHVSEIAHNHVDKPSDTLTIGEDVNVKILSINPDEG 267
Query: 246 RLVLSNRK----AMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS ++ A + + + +GS++ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 268 RISLSIKETLPGAWTNIEEKAPVGSILEGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 327
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD ++V
Sbjct: 328 IATPHEVLHEGDDIQV 343
>gi|410667902|ref|YP_006920273.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Thermacetogenium phaeum DSM 12270]
gi|409105649|gb|AFV11774.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase IspH
[Thermacetogenium phaeum DSM 12270]
Length = 708
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 143/284 (50%), Gaps = 31/284 (10%)
Query: 63 LFEEAYERCRTAPMEGVSFTL------------EEFHSALEKYDFNSELGTK-------- 102
+F+E E+ + +E VS T +E H ++ N +LGT
Sbjct: 281 MFDEEMEKAQGGEVEAVSDTTPQSATEENPPTGQEQHEPGQEEMMNLDLGTPRQIQQGDI 340
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
+ G+V + L+DI KS +P QE + + E V + + +V+ +N+ +
Sbjct: 341 ISGSVVQVRDDEVLLDIGGKSEGVIPRQELSLKNTGNPIEEIKVGDVLDVYVLRVDND-E 399
Query: 163 DSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK 222
L+LS + A + + +E + G+VV KGG++ +V G+RGFVP S I
Sbjct: 400 GQLLLSKKRADRIKALDFLEKALAEKTELAGEVVRVVKGGLLVDVLGIRGFVPASLIERG 459
Query: 223 STA--EELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--QAQLGIGSVV------IGTV 272
E+ LGK L L+ +E D ++++VLS + + + +AQ + + GTV
Sbjct: 460 YVGDLEKYLGKTLRLRVIEFDRNKAKVVLSQKAILQEEHLEAQRRLWETIEPDQIRKGTV 519
Query: 273 QSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ L +GAF+D+GG++GLLH+S++S RV + V+Q GD ++V
Sbjct: 520 RHLTNFGAFVDLGGVDGLLHISELSWGRVKHPSDVVQEGDEIEV 563
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 81/166 (48%), Gaps = 16/166 (9%)
Query: 165 LVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS- 220
+VLS + I E E R+L D + KG V G ++ G+ G + S++S
Sbjct: 486 VVLSQKAILQEEHLEAQRRLWETIEPDQIRKGTVRHLTNFGAFVDLGGVDGLLHISELSW 545
Query: 221 -----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGT 271
+E G ++ + + VD+E+ R+ LS ++ + + +G +V GT
Sbjct: 546 GRVKHPSDVVQE--GDEIEVYVLSVDKERKRISLSLKQVQGNPWDTVDERYQVGEIVTGT 603
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L +GAF+++ G+ GL+H+S+++ V ++ G+ ++V
Sbjct: 604 VVRLVSFGAFVELEPGVEGLVHISRMADYHVEKPEDIVAVGEQIQV 649
>gi|260428264|ref|ZP_05782243.1| ribosomal protein S1 [Citreicella sp. SE45]
gi|260422756|gb|EEX16007.1| ribosomal protein S1 [Citreicella sp. SE45]
Length = 558
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
T+EEF + L E + ++ + G+ VKG V + A++D+ K + +E
Sbjct: 5 TMEEFEALLNESLEMDTPDEGSVVKGKVIAIEAGQAIIDVGYKMEGRVDLKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 61 GEAPDISVGDEVEVYLRSAENARGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRV 120
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 181 SRAEQRAEVIANLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILS 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETVKV 247
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 108/208 (51%), Gaps = 16/208 (7%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 111 RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDRR 166
Query: 162 DDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R I E E+ ++ +E V G V + G ++ G+ G + +
Sbjct: 167 RGNIVVSRRAILEESRAEQRAEVIANLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTD 226
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
++ + + E+L G+ + ++ ++++++ R+ L ++ D + +GSV G
Sbjct: 227 MAWRRVNHPSEILSIGETVKVQVIKINKDTHRISLGMKQLQEDPWDLVAVKFPLGSVHKG 286
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 287 RVTNITDYGAFVELEPGVEGLVHVSEMS 314
Score = 38.5 bits (88), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
LG+ KG V + GA V++ + E K K+V IV +E V++ E
Sbjct: 280 LGSVHKGRVTNITDYGAFVELEPGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVMVLE 338
Query: 159 -NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ A + L L+ WE + E V+G+V + G+ ++G + G V
Sbjct: 339 IDPAKRRVSLGLKQTMRN-PWEVFSETHPEGTQVEGEVKNITEFGLFIGLDGEIDGMVHL 397
Query: 217 SQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSV 267
S +S EE + G + EVD E+ R+ LS + D ++A G+ GS+
Sbjct: 398 SDLSWDQRGEEAIQEYRKGDIVQAVVTEVDTEKERISLSIKALGGDKFAEAVGGVKRGSI 457
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ V +++ G ++ G+ + S +S DR GD + V
Sbjct: 458 ITVNVTAIEDGGIEVEYEGMKSFIRRSDLSRDRSEQRPERFSVGDHIDV 506
>gi|81428628|ref|YP_395628.1| 30S ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
gi|78610270|emb|CAI55319.1| 30S Ribosomal protein S1 [Lactobacillus sakei subsp. sakei 23K]
Length = 403
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 126/235 (53%), Gaps = 16/235 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKS-SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI- 155
++G VKG V ++R +V I +P +E I+ + +A V + VI
Sbjct: 26 KIGDVVKGEVLVIEDRQVIVGIEGTGVEGVVPQKELSSQPIETLTDAVKVGDQFDLVVIA 85
Query: 156 -IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
IG ++ + S +LS R ++ W Q +K V+ KGG+V + G+RGF+
Sbjct: 86 TIGNDKENGSYLLSKRRLEARKVWAEIEQKFENKETIKATVLNVVKGGLVVDA-GVRGFL 144
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS--QAQLGI------ 264
P S +S + + G++L L+ +E++ ++RL+LS RKA+ + QAQL
Sbjct: 145 PASMLSDRFVRDLNSFKGQELELQIIEIEPSENRLILS-RKALVEQERQAQLKAVFEKLL 203
Query: 265 -GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G +V G V L +GAF+D+GG++GL+HVS+IS+D + + VL+ G +KV +
Sbjct: 204 PGDIVEGEVARLTNFGAFVDLGGVDGLVHVSEISYDHINQPSDVLEVGQNVKVKI 258
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 114/229 (49%), Gaps = 23/229 (10%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
+K TV G +VD A +LP A + + V + G + E II ++
Sbjct: 122 IKATVLNVVKGGLVVD--AGVRGFLP---ASMLSDRFVRDLNSFKGQELELQIIEIEPSE 176
Query: 163 DSLVLSLRMIQYELAWERCRQLQS------EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ L+LS + + + ER QL++ +V+G+V G ++ G+ G V
Sbjct: 177 NRLILSRKAL---VEQERQAQLKAVFEKLLPGDIVEGEVARLTNFGAFVDLGGVDGLVHV 233
Query: 217 SQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVV 268
S+IS + +G+++ +K + +D+E+ R+ LS + D + +GS +
Sbjct: 234 SEISYDHINQPSDVLEVGQNVKVKILSLDQEKGRISLSIKDTQPGPWDDIAEKAPVGSTL 293
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV+ L +GAF+++ G+ GL+H+SQISH +A VL+ G T++V
Sbjct: 294 EGTVKRLTTFGAFVEVFPGVEGLVHISQISHQHIATPNDVLEEGQTVQV 342
>gi|77412572|ref|ZP_00788862.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
gi|77161374|gb|EAO72395.1| ribosomal protein S1 [Streptococcus agalactiae CJB111]
Length = 332
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 8 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 65
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 66 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 125
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 126 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 161
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A +++ S VV GKV G ++ G+ G V
Sbjct: 94 DAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVH 153
Query: 216 FSQISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 154 VTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDV 213
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 214 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 263
>gi|99080041|ref|YP_612195.1| 30S ribosomal protein S1 [Ruegeria sp. TM1040]
gi|99036321|gb|ABF62933.1| SSU ribosomal protein S1P [Ruegeria sp. TM1040]
Length = 558
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 24/251 (9%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG + + A++D+ K + ++K
Sbjct: 6 SMEEFEALLQESFEMDTPEEGSVVKGKIIAIEAGQAIIDVGYKMEGRV--------ELKE 57
Query: 140 VEEAGIVP----GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
G P G + E + A V+S M + E AW+R + ++D V+G +
Sbjct: 58 FANPGEAPEVSVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAI 117
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
G KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R
Sbjct: 118 FGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRA 177
Query: 254 AMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
+ +S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +
Sbjct: 178 ILEESRAEQRAEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPS 237
Query: 306 TVLQPGDTLKV 316
+L G+T+KV
Sbjct: 238 EILSIGETVKV 248
>gi|77414872|ref|ZP_00790982.1| ribosomal protein S1 [Streptococcus agalactiae 515]
gi|77159073|gb|EAO70274.1| ribosomal protein S1 [Streptococcus agalactiae 515]
Length = 339
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 15 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 72
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 73 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 132
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 133 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 168
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A +++ S VV GKV G ++ G+ G V
Sbjct: 101 DAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVH 160
Query: 216 FSQISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 161 VTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDV 220
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 221 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 270
>gi|389576809|ref|ZP_10166837.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
gi|389312294|gb|EIM57227.1| ribosomal protein S1 [Eubacterium cellulosolvens 6]
Length = 235
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 61/153 (39%), Positives = 96/153 (62%), Gaps = 11/153 (7%)
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
E WE+ ++ Q+E + V G GV++ VEG+RGF+P S+++ + LGK+
Sbjct: 26 EANWEKLKEYQTEKTPLTVTVDGVVNKGVISNVEGVRGFIPASRLALGHVDDLNAYLGKE 85
Query: 233 LPLKFVEVDEEQSRLVLSN---RKAMADSQAQ-----LGIGSVVIGTVQSLKPYGAFIDI 284
+ + EVDEE+ RL+LS +A AD + + + IGSV+ G V+S++ YGAFID+
Sbjct: 86 IQVVIREVDEEKGRLILSAVELLRAKADEEKKAKIEAIEIGSVMDGKVESIQSYGAFIDL 145
Query: 285 G-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G G++GL+H+SQIS+ RV + VL+ G +KV
Sbjct: 146 GDGLSGLVHISQISNKRVKSVEDVLKAGQDVKV 178
>gi|403238099|ref|ZP_10916685.1| 30S ribosomal protein S1 [Bacillus sp. 10403023]
Length = 378
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/230 (31%), Positives = 124/230 (53%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
++G + G V + + V + +K +P E HVE+A V EE +
Sbjct: 14 QVGDVITGKVTKVEEKQVFVSVENSKLDGIIPISELSS---LHVEKASDVVSEGEELELS 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+++L+LS + + AW+ Q + V + V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEEEALILSKKAVLASKAWDDLEQKFNTGEVFEAVVKDVVKGGLVVDL-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + K L +K VE+D E++R++LS+R + + Q L +G+
Sbjct: 130 SLVENYYVEDFSDYKDKALTVKVVELDREKNRVILSHRAVVEEEQKNKKQHVLDSLQVGA 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ GTVQ L +GAF+DIGGI+GL+H+SQ+SH+ V+ + V++ G +KV
Sbjct: 190 VLEGTVQRLTDFGAFVDIGGIDGLVHISQLSHEHVSKPSDVVEEGQVIKV 239
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 73/138 (52%), Gaps = 13/138 (9%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTA------EELLGKDLPLKFVEVDEE 243
V++G V G ++ G+ G V SQ+S + + EE G+ + +K + VD +
Sbjct: 190 VLEGTVQRLTDFGAFVDIGGIDGLVHISQLSHEHVSKPSDVVEE--GQVIKVKVLSVDRD 247
Query: 244 QSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH 298
R+ LS ++ + + ++ +G VV G V+ L +GAF+++ G+ GL+H+SQIS
Sbjct: 248 NERISLSVKETLPGPWENIAEKISVGDVVDGKVKRLVSFGAFVEVLPGVEGLVHISQISS 307
Query: 299 DRVADIATVLQPGDTLKV 316
+ VL+ G ++V
Sbjct: 308 KHIGTPHEVLKEGQEVQV 325
>gi|402822791|ref|ZP_10872254.1| 30S ribosomal protein S1 [Sphingomonas sp. LH128]
gi|402263658|gb|EJU13558.1| 30S ribosomal protein S1 [Sphingomonas sp. LH128]
Length = 570
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/229 (30%), Positives = 119/229 (51%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV +N A++D+ KS + +E + H G+ G + E +
Sbjct: 30 GRVVKGTVTAIENDKAVIDVGLKSEGRVSLREFARGEDDH----GLKVGDEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW++ E V+G + G KGG +++G F+P SQ+
Sbjct: 86 NADGEAMLSRDRARREAAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ P + +++D + +V+S R + +++A+ L G V+
Sbjct: 146 DIRPVRDVTPLMDVPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVID 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V+ GDT+KV +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQI 254
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 106/223 (47%), Gaps = 16/223 (7%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
+A +K + G +V+G +F G VD+ + A+LP + I ++ V V
Sbjct: 101 EAAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVTPLMDV 159
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGV 203
P + F I+ + ++V+S R + E E+ +L SE V+ G V G
Sbjct: 160 P---QPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLSEGQVIDGVVKNITDYGA 216
Query: 204 VAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259
++ G+ G + + +S K +G + ++ + ++ E R+ L ++ +D
Sbjct: 217 FVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQIIRINSETQRISLGMKQLESDPW 276
Query: 260 AQLGI----GSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G+ G+ + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 277 EGAGVKYPVGAKLQGTVTNITEYGAFVELEAGIEGLVHVSEMS 319
>gi|167644076|ref|YP_001681739.1| 30S ribosomal protein S1 [Caulobacter sp. K31]
gi|167346506|gb|ABZ69241.1| ribosomal protein S1 [Caulobacter sp. K31]
Length = 569
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 15/243 (6%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
+ ++ DF GT VKG V + A++D+ K+ +P +E + + +A I
Sbjct: 18 LNDSMGGRDFQE--GTVVKGIVVGIEKDFAIIDVGLKTEGRVPQKEFGVDETG---KATI 72
Query: 146 VPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVA 205
G E + A V+S + E AW R + +++ V G +VG KGG
Sbjct: 73 KVGDSVEVFLERLENALGEAVISREKAKREEAWTRLEGVYAKNEPVMGAIVGRVKGGFTV 132
Query: 206 EVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--- 260
++ G F+P SQ+ + + L+GK+ P +++D + +V+S R + +++A
Sbjct: 133 DLGGASAFLPGSQVDIRPVRDVGPLMGKEQPFAILKMDRPRGNIVVSRRAILEEARAEQR 192
Query: 261 -----QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
QL G + G V+++ YGAF+D+GGI+GLLHV+ +S RV + VL GDT+K
Sbjct: 193 TELVSQLQEGEIREGVVKNITDYGAFVDLGGIDGLLHVTDMSWKRVNHPSQVLAVGDTVK 252
Query: 316 VCL 318
V +
Sbjct: 253 VQI 255
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 101/207 (48%), Gaps = 16/207 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
V G + G VD+ +SA+LP + I ++ V G + G ++ F I+ +
Sbjct: 118 VMGAIVGRVKGGFTVDLGG-ASAFLPGSQVDIRPVRDV---GPLMGKEQPFAILKMDRPR 173
Query: 163 DSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
++V+S R I E E+ +L S E + +G V G ++ G+ G + + +
Sbjct: 174 GNIVVSRRAILEEARAEQRTELVSQLQEGEIREGVVKNITDYGAFVDLGGIDGLLHVTDM 233
Query: 220 SSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGT 271
S K +G + ++ V+++ + R+ L ++ +D +A+ +G+ G
Sbjct: 234 SWKRVNHPSQVLAVGDTVKVQIVKINPDTQRISLGMKQLQSDPWDGVEAKYPVGAKFTGR 293
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ ++ YGAF+++ G+ GL+HVS++S
Sbjct: 294 ITNITDYGAFVELEAGVEGLVHVSEMS 320
>gi|422759073|ref|ZP_16812835.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
gi|322411908|gb|EFY02816.1| 30S ribosomal protein S1 [Streptococcus dysgalactiae subsp.
dysgalactiae ATCC 27957]
Length = 401
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/156 (35%), Positives = 96/156 (61%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG + A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKGTL--AVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ ++L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVIEEAAKEARTEVFSKLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
G+VV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GAVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 86/168 (51%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A E ++ SE VV G V G ++ G+ G V +
Sbjct: 164 AENRFILSRREVIEEAAKEARTEVFSKLSEGAVVTGTVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G+++ +K + +DEE R+ LS + + +L G VV
Sbjct: 224 ELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAQGDVVE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQEVTV 331
>gi|399022557|ref|ZP_10724631.1| ribosomal protein S1 [Chryseobacterium sp. CF314]
gi|398084617|gb|EJL75295.1| ribosomal protein S1 [Chryseobacterium sp. CF314]
Length = 597
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 136/268 (50%), Gaps = 22/268 (8%)
Query: 62 QLFEEAYERCRTAPMEGVSFTLEE-FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDIT 120
Q +++E A LEE ++ +L D N L KV V TD + A+VDI
Sbjct: 20 QFDWDSFESGLDADARKEKSDLEEIYNGSLNNLDDNDVLVGKV---VRLTD-KEAIVDIN 75
Query: 121 AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER 180
KS + E ++ G+ G + E ++ + L LS R + AW++
Sbjct: 76 FKSEGVISLNEFRYNQ-------GLKVGDEVEVMVDRREDKTGQLQLSHRKARTLKAWDK 128
Query: 181 CRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFV 238
+L +V G V KGG++ +V G+ F+P SQI K ++ +GK + K V
Sbjct: 129 VNELHETGEIVNGFVKSRTKGGMIVDVHGIEAFLPGSQIDVKPIKDYDQFVGKTMEFKVV 188
Query: 239 EVDEEQSRLVLSNRKAM-ADSQ-------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGL 290
+++ E +V+S++ + AD + AQL G V+ GTV+++ YG FID+GG++GL
Sbjct: 189 KINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVLEGTVKNITSYGVFIDLGGVDGL 248
Query: 291 LHVSQISHDRVADIATVLQPGDTLKVCL 318
+H++ +S RV + +L+ G T+KV +
Sbjct: 249 IHITDLSWSRVNHPSEILEDGQTVKVVI 276
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
A +K + E G V G V G +VD+ A+LP + + IK ++ G
Sbjct: 125 AWDKVNELHETGEIVNGFVKSRTKGGMIVDVHG-IEAFLPGSQIDVKPIKDYDQ---FVG 180
Query: 149 LKEEFVIIGENEADDSLVLSLR-MIQYELAWER---CRQLQSEDVVVKGKVVGANKGGVV 204
EF ++ N ++V+S + +I+ ++ ++ QL+ V+ +G V GV
Sbjct: 181 KTMEFKVVKINPEFKNVVVSHKALIEADIEGQKKEIIAQLEKGQVL-EGTVKNITSYGVF 239
Query: 205 AEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS-- 258
++ G+ G + + +S + E+L G+ + + ++ D+E++R+ L ++ A
Sbjct: 240 IDLGGVDGLIHITDLSWSRVNHPSEILEDGQTVKVVILDFDDEKTRIQLGMKQLEAHPWD 299
Query: 259 --QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQIS 297
A L +G V G V L YGAF++I G+ GL+HVS++S
Sbjct: 300 ALSADLKVGDKVKGKVVVLADYGAFVEIAPGVEGLIHVSEMS 341
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 67/118 (56%), Gaps = 11/118 (9%)
Query: 191 VKGKVVG-ANKGGVVAEVEGLRGFVPFSQISSKS---TAEELL--GKDLPLKFVEVDEEQ 244
VKGKVV A+ G V G+ G + S++S + +A + + G ++ + + +D E+
Sbjct: 311 VKGKVVVLADYGAFVEIAPGVEGLIHVSEMSWSTHLRSAGDFVKVGDEVEAEVLTLDREE 370
Query: 245 SRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
++ L ++ D +A+ +GS +GTV++ +G F+++ GI+GL+++S +S
Sbjct: 371 RKISLGIKQLSKDPWENIEAKYPVGSKHVGTVRNFTNFGVFVELEEGIDGLIYISDLS 428
>gi|310815216|ref|YP_003963180.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
gi|385232758|ref|YP_005794100.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare WSH-001]
gi|308753951|gb|ADO41880.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare Y25]
gi|343461669|gb|AEM40104.1| 30S ribosomal protein S1 [Ketogulonicigenium vulgare WSH-001]
Length = 561
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/252 (29%), Positives = 131/252 (51%), Gaps = 26/252 (10%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
T++EF + L E ++ ++ + G+ VKG V + A++D+ K + +K
Sbjct: 6 TMDEFEALLQESFEIDTPQEGSVVKGKVIAIEAGQAIIDVGYKMEGRV--------DLKE 57
Query: 140 VEEAGIVPGLK-----EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
G P +K E ++ EN A V+S M + E AW+R + + + V+G
Sbjct: 58 FANPGEAPSIKVGDEVEVYLRAAEN-ARGEAVISREMARREEAWDRLEKAYASEERVEGA 116
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNR 252
+ G KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R
Sbjct: 117 IFGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRR 176
Query: 253 KAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI 304
+ +S+A+ L G VV G V+++ YGAF+D+GG++GLLHV+ ++ RV
Sbjct: 177 AILEESRAEQRAEVIGNLTEGQVVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHP 236
Query: 305 ATVLQPGDTLKV 316
+ +L G+T+KV
Sbjct: 237 SEILSIGETIKV 248
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 17/242 (7%)
Query: 86 FHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGI 145
+HS KY S G V GA V++ + E K K+V I
Sbjct: 272 WHSVETKYPLESVH----TGRVTNITEYGAFVELEPGVEGLVHVSEMSWTK-KNVHPGKI 326
Query: 146 VPGLKEEFVIIGENEADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVV 204
V +E V++ E ++ V L L+ Q WE + E V+G+V + G+
Sbjct: 327 VSTSQEVEVMVLEIDSSKRRVSLGLKQTQRN-PWEVFAETHPEGTNVEGEVKNITEFGLF 385
Query: 205 AEVEG-LRGFVPFSQISSKSTAEELLGKD-----LPLKFVEVDEEQSRLVLS----NRKA 254
+ G + G V S ++ + E+++G + K +EVD E+ R+ LS +
Sbjct: 386 IGLSGDIDGMVHLSDLTWEGRGEDVIGDYRKGDVVKAKVLEVDVEKERISLSIKAMDEDP 445
Query: 255 MADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
AD+ + GSV+ V ++ G ++ G+ + S +S DR GD +
Sbjct: 446 FADAVDGVKRGSVITVEVTKIEDGGIEVEYEGMKSFIRRSDLSRDRADQRPERFSVGDKV 505
Query: 315 KV 316
V
Sbjct: 506 DV 507
>gi|259415557|ref|ZP_05739478.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
gi|259348787|gb|EEW60549.1| ribosomal protein S1 [Silicibacter sp. TrichCH4B]
Length = 558
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/251 (28%), Positives = 129/251 (51%), Gaps = 24/251 (9%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG + + A++D+ K + ++K
Sbjct: 6 SMEEFEALLQESFEMDTPEEGSVVKGKIIAIEAGQAIIDVGYKMEGRV--------ELKE 57
Query: 140 VEEAGIVP----GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
G P G + E + A V+S M + E AW+R + ++D V+G +
Sbjct: 58 FANPGEAPEVSVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAI 117
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
G KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R
Sbjct: 118 FGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRA 177
Query: 254 AMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
+ +S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +
Sbjct: 178 ILEESRAEQRAEVIGNLSEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPS 237
Query: 306 TVLQPGDTLKV 316
+L G+T+KV
Sbjct: 238 EILSIGETVKV 248
>gi|126731017|ref|ZP_01746825.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
gi|126708319|gb|EBA07377.1| 30S ribosomal protein S1 [Sagittula stellata E-37]
Length = 554
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 131/251 (52%), Gaps = 26/251 (10%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E + ++ + G+ VKG V + A++D+ K + ++K
Sbjct: 1 MEEFEALLNESLEMDTPDEGSVVKGKVIAIEAGQAIIDVGYKMEGRV--------ELKEF 52
Query: 141 EEAGIVPGLK-----EEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
E G P ++ E F+ EN A V+S M + E AW+R + ++D V+G +
Sbjct: 53 AEPGEQPNVQVGDEVEVFLRAAEN-ARGEAVISREMARREEAWDRLEKAYADDARVEGAI 111
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
G KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R
Sbjct: 112 FGRVKGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRA 171
Query: 254 AMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
+ +S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +
Sbjct: 172 ILEESRAEQRAEVIGKLQEGDSVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPS 231
Query: 306 TVLQPGDTLKV 316
+L G+T+KV
Sbjct: 232 EILSIGETVKV 242
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 109/210 (51%), Gaps = 18/210 (8%)
Query: 101 TKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 105 ARVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDR 160
Query: 161 ADDSLVLSLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
++V+S R I + E E +LQ D V G V + G ++ G+ G +
Sbjct: 161 RRGNIVVSRRAILEESRAEQRAEVIGKLQEGDSV-DGVVKNITEYGAFVDLGGVDGLLHV 219
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGI----GSVV 268
+ ++ + + E+L G+ + ++ +++++E R+ L ++ D +G+ GSV
Sbjct: 220 TDMAWRRVNHPSEILSIGETVKVQVIKINKETHRISLGMKQLQEDPWDLVGVKYPLGSVH 279
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 280 KGRVTNITDYGAFVELEAGVEGLVHVSEMS 309
>gi|257877994|ref|ZP_05657647.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257881219|ref|ZP_05660872.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257889807|ref|ZP_05669460.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257892256|ref|ZP_05671909.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|314938007|ref|ZP_07845317.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|314948740|ref|ZP_07852112.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|314951758|ref|ZP_07854797.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|389868291|ref|YP_006375714.1| 30S ribosomal protein S1 [Enterococcus faecium DO]
gi|424796676|ref|ZP_18222374.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|424825698|ref|ZP_18250661.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|424857065|ref|ZP_18281257.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|424868168|ref|ZP_18291929.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|424954676|ref|ZP_18369564.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|424960233|ref|ZP_18374771.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|424963101|ref|ZP_18377366.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|424967146|ref|ZP_18380878.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|424969833|ref|ZP_18383381.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|424976261|ref|ZP_18389364.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|424994815|ref|ZP_18406737.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|425003664|ref|ZP_18415017.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|425009173|ref|ZP_18420205.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|425017169|ref|ZP_18427692.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|425036861|ref|ZP_18441576.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|425038780|ref|ZP_18443370.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|425043827|ref|ZP_18448029.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|425045673|ref|ZP_18449760.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|425049502|ref|ZP_18453349.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|425051418|ref|ZP_18455084.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|425059359|ref|ZP_18462705.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|425062179|ref|ZP_18465350.1| putative ribosomal protein S1 [Enterococcus faecium 503]
gi|257812222|gb|EEV40980.1| ribosomal protein S1 [Enterococcus faecium 1,230,933]
gi|257816877|gb|EEV44205.1| ribosomal protein S1 [Enterococcus faecium 1,231,502]
gi|257826167|gb|EEV52793.1| ribosomal protein S1 [Enterococcus faecium 1,231,410]
gi|257828635|gb|EEV55242.1| ribosomal protein S1 [Enterococcus faecium 1,231,408]
gi|313596037|gb|EFR74882.1| putative ribosomal protein S1 [Enterococcus faecium TX0133A]
gi|313642582|gb|EFS07162.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a04]
gi|313644806|gb|EFS09386.1| putative ribosomal protein S1 [Enterococcus faecium TX0082]
gi|388533540|gb|AFK58732.1| ribosomal protein S1 [Enterococcus faecium DO]
gi|402922682|gb|EJX43037.1| putative ribosomal protein S1 [Enterococcus faecium S447]
gi|402925214|gb|EJX45375.1| putative ribosomal protein S1 [Enterococcus faecium R501]
gi|402929490|gb|EJX49244.1| putative ribosomal protein S1 [Enterococcus faecium R499]
gi|402936172|gb|EJX55369.1| putative ribosomal protein S1 [Enterococcus faecium R494]
gi|402937338|gb|EJX56456.1| putative ribosomal protein S1 [Enterococcus faecium R497]
gi|402948595|gb|EJX66719.1| putative ribosomal protein S1 [Enterococcus faecium P1986]
gi|402950215|gb|EJX68224.1| putative ribosomal protein S1 [Enterococcus faecium P1190]
gi|402954987|gb|EJX72561.1| putative ribosomal protein S1 [Enterococcus faecium P1140]
gi|402963166|gb|EJX80052.1| putative ribosomal protein S1 [Enterococcus faecium P1139]
gi|402970064|gb|EJX86430.1| putative ribosomal protein S1 [Enterococcus faecium P1123]
gi|402979027|gb|EJX94721.1| putative ribosomal protein S1 [Enterococcus faecium ERV168]
gi|402990398|gb|EJY05271.1| putative ribosomal protein S1 [Enterococcus faecium ERV1]
gi|402991450|gb|EJY06237.1| putative ribosomal protein S1 [Enterococcus faecium ERV102]
gi|403004933|gb|EJY18689.1| putative ribosomal protein S1 [Enterococcus faecium C621]
gi|403013161|gb|EJY26288.1| putative ribosomal protein S1 [Enterococcus faecium 514]
gi|403017870|gb|EJY30593.1| putative ribosomal protein S1 [Enterococcus faecium 511]
gi|403018641|gb|EJY31309.1| putative ribosomal protein S1 [Enterococcus faecium 513]
gi|403026596|gb|EJY38559.1| putative ribosomal protein S1 [Enterococcus faecium 510]
gi|403027362|gb|EJY39255.1| putative ribosomal protein S1 [Enterococcus faecium 509]
gi|403035464|gb|EJY46852.1| putative ribosomal protein S1 [Enterococcus faecium 504]
gi|403037686|gb|EJY48950.1| putative ribosomal protein S1 [Enterococcus faecium 506]
gi|403039296|gb|EJY50459.1| putative ribosomal protein S1 [Enterococcus faecium 503]
Length = 417
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 34 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 93
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 94 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 152
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 153 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 212
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 213 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNV 263
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 214 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQE 273
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 274 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 333
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 334 IATPHEVLHEGDEVKV 349
>gi|425737299|ref|ZP_18855572.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
gi|425482647|gb|EKU49803.1| 30S ribosomal protein S1 [Staphylococcus massiliensis S46]
Length = 393
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 21/234 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF----- 153
G KV G V +++ +V + K + +P + H H+E A V + +E
Sbjct: 16 GDKVTGEVQQLEDKHVVVSVNGGKYNGIIPISQLSTH---HIENASDVVKVGDEIGAYVT 72
Query: 154 -VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRG 212
+ + E S +LS R ++ E ++E ++ Q D ++ KV KGG+V +V G RG
Sbjct: 73 KIEVDEENESGSYILSKRQLEEEKSYEFLKEKQDNDETIEAKVTEVVKGGLVVDV-GQRG 131
Query: 213 FVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLS--------NRKAMADSQAQL 262
F+P S IS+ + + GK L LK E+D E +R++LS N K +
Sbjct: 132 FIPASLISTDYIEDFSDYDGKVLELKVEELDPENNRVILSRKAVEAIENEKKKEQLLDSI 191
Query: 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G V L +GAFID+GG++GL+HVS++SH+ V V++ G T+ V
Sbjct: 192 QAGDVLEGKVARLTNFGAFIDLGGVDGLVHVSELSHEHVKTPDEVVEIGQTVNV 245
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 77/138 (55%), Gaps = 9/138 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQS 245
V++GKV G ++ G+ G V S++S + T +E+ +G+ + +K V+++
Sbjct: 196 VLEGKVARLTNFGAFIDLGGVDGLVHVSELSHEHVKTPDEVVEIGQTVNVKVRSVEKDSE 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + + + + G VV G V L +GAF++IG G+ GL+H+S+ISH
Sbjct: 256 RISLSIKDTLPSPFETIKEKFNEGDVVEGKVMRLANFGAFVEIGAGLQGLVHISEISHKH 315
Query: 301 VADIATVLQPGDTLKVCL 318
+ VL+PGDT+ V +
Sbjct: 316 IGTPNEVLEPGDTVNVKI 333
>gi|406658273|ref|ZP_11066413.1| 30S ribosomal protein S1 [Streptococcus iniae 9117]
gi|405578488|gb|EKB52602.1| 30S ribosomal protein S1 [Streptococcus iniae 9117]
Length = 406
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ ++L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVIEEAATEARQEVFSKLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A E +++ SE VV G V G ++ G+ G V +
Sbjct: 164 AENRFILSRREVIEEAATEARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G+++ +K + +DEE R+ LS + + +L G VV
Sbjct: 224 ELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAQGDVVE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSVGQDVTV 331
>gi|416134937|ref|ZP_11598398.1| putative ribosomal protein [Enterococcus faecium E4452]
gi|430828330|ref|ZP_19446452.1| ribosomal protein S1 [Enterococcus faecium E0269]
gi|431745738|ref|ZP_19534577.1| ribosomal protein S1 [Enterococcus faecium E2134]
gi|364092367|gb|EHM34748.1| putative ribosomal protein [Enterococcus faecium E4452]
gi|430483625|gb|ELA60693.1| ribosomal protein S1 [Enterococcus faecium E0269]
gi|430609944|gb|ELB47116.1| ribosomal protein S1 [Enterococcus faecium E2134]
Length = 415
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 26 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 85
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 86 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 144
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 145 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNV 255
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 206 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQE 265
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 266 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 325
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 326 IATPHEVLHEGDEVKV 341
>gi|76799531|ref|ZP_00781663.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
gi|76585115|gb|EAO61741.1| 30S ribosomal protein S1 [Streptococcus agalactiae 18RS21]
Length = 466
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 142 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 199
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 200 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 259
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 260 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 295
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A +++ S VV GKV G ++ G+ G V
Sbjct: 228 DAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVH 287
Query: 216 FSQISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 288 VTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDV 347
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 348 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 397
>gi|410594647|ref|YP_006951374.1| 40S ribosomal protein S1 [Streptococcus agalactiae SA20-06]
gi|410518286|gb|AFV72430.1| 40S ribosomal protein S1 [Streptococcus agalactiae SA20-06]
Length = 400
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A +++ S VV GKV G ++ G+ G V +
Sbjct: 164 AENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + + +G+++ +K + +DEE R+ LS + + +L G V+
Sbjct: 224 ELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH RV + +L G + V
Sbjct: 284 GKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDLLSAGQEVTV 331
>gi|421532995|ref|ZP_15979332.1| 30S ribosomal protein S1 [Streptococcus agalactiae STIR-CD-17]
gi|403641690|gb|EJZ02632.1| 30S ribosomal protein S1 [Streptococcus agalactiae STIR-CD-17]
Length = 400
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 87/168 (51%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A +++ S VV GKV G ++ G+ G V +
Sbjct: 164 AENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + + +G+++ +K + +DEE R+ LS + + +L G V+
Sbjct: 224 ELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDVIE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 284 GKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 331
>gi|22537308|ref|NP_688159.1| 30S ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
gi|25011274|ref|NP_735669.1| 30S ribosomal protein S1 [Streptococcus agalactiae NEM316]
gi|76786829|ref|YP_329853.1| 30S ribosomal protein S1 [Streptococcus agalactiae A909]
gi|339301393|ref|ZP_08650496.1| 30S ribosomal protein S1 [Streptococcus agalactiae ATCC 13813]
gi|406709602|ref|YP_006764328.1| 30S ribosomal protein S1 [Streptococcus agalactiae GD201008-001]
gi|417005485|ref|ZP_11944078.1| 30S ribosomal protein S1 [Streptococcus agalactiae FSL S3-026]
gi|421147222|ref|ZP_15606912.1| 30S ribosomal protein S1 [Streptococcus agalactiae GB00112]
gi|424049329|ref|ZP_17786880.1| 30S ribosomal protein S1 [Streptococcus agalactiae ZQ0910]
gi|22534178|gb|AAN00032.1|AE014244_9 ribosomal protein S1 [Streptococcus agalactiae 2603V/R]
gi|23095698|emb|CAD46884.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561886|gb|ABA44470.1| ribosomal protein S1 [Streptococcus agalactiae A909]
gi|319745155|gb|EFV97478.1| 30S ribosomal protein S1 [Streptococcus agalactiae ATCC 13813]
gi|341577298|gb|EGS27706.1| 30S ribosomal protein S1 [Streptococcus agalactiae FSL S3-026]
gi|389649218|gb|EIM70701.1| 30S ribosomal protein S1 [Streptococcus agalactiae ZQ0910]
gi|396937373|emb|CCG93428.1| 30S ribosomal protein S1 [Streptococcus agalactiae]
gi|401685900|gb|EJS81890.1| 30S ribosomal protein S1 [Streptococcus agalactiae GB00112]
gi|406650487|gb|AFS45888.1| 30S ribosomal protein S1 [Streptococcus agalactiae GD201008-001]
gi|406718031|emb|CCG97610.1| 30S ribosomal protein S1 [Streptococcus agalactiae]
gi|406718114|emb|CCG97692.1| 30S ribosomal protein S1 [Streptococcus agalactiae]
Length = 400
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + +S A + +
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFDAKIKEVDAAENRFILSRREVVEESAAAARKEVFSNIEV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV G V L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGKVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 12/170 (7%)
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSE---DVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ A++ +LS R + E A +++ S VV GKV G ++ G+ G V
Sbjct: 162 DAAENRFILSRREVVEESAAAARKEVFSNIEVGSVVTGKVARLTSFGAFIDLGGVDGLVH 221
Query: 216 FSQISSKST----AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSV 267
+++S + + +G+++ +K + +DEE R+ LS + + +L G V
Sbjct: 222 VTELSHERNVSPKSVVTVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAAGDV 281
Query: 268 VIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+ G V+ L +GAF+++ GI+GL+H+SQISH RV + VL G + V
Sbjct: 282 IEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKRVENPKDVLSAGQEVTV 331
>gi|431228354|ref|ZP_19501495.1| ribosomal protein S1 [Enterococcus faecium E1622]
gi|430574656|gb|ELB13419.1| ribosomal protein S1 [Enterococcus faecium E1622]
Length = 409
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 26 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 85
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 86 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 144
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 145 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLSVNDDVNV 255
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 206 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLSVNDDVNVKVLSINPEQE 265
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 266 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 325
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 326 IATPHEVLHEGDEVKV 341
>gi|392989866|ref|YP_006488459.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
gi|392337286|gb|AFM71568.1| 30S ribosomal protein S1 [Enterococcus hirae ATCC 9790]
Length = 410
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 16/232 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G V G V +++ +V I A +P +E ++ + E V E VI
Sbjct: 27 VGDVVSGEVLVIEDKQVVVGIEGAGVEGVVPAKELSTSPVEDINEVVKVGDTLELVVIST 86
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + +++ V KGG+V +V G+RGFVP
Sbjct: 87 IGKDKENGSYLLSKRRLDAKKVWEDIEKDFQAGNIIEAPVTNVVKGGLVVDV-GVRGFVP 145
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGI 264
S + A+ E G+ L K VE++ ++RL+LS+ KA+ +++ A +
Sbjct: 146 ASMVEDHFVADFSEYKGETLAFKIVEIEPSENRLILSH-KAVVETEKEEKKKEILANIHE 204
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G V + +GAF+D+GGI+GL+HVS+ISH VA + L GD +KV
Sbjct: 205 GDVIDGRVARITDFGAFVDLGGIDGLVHVSEISHSHVAKPSDALAVGDEVKV 256
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 75/136 (55%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ +G ++ +K + ++ EQ
Sbjct: 207 VIDGRVARITDFGAFVDLGGIDGLVHVSEISHSHVAKPSDALAVGDEVKVKVLSINPEQE 266
Query: 246 RLVLSNRKAM----ADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + D + + +GSV+ G V+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 267 RVSLSIKDTLPGPWTDIEEKATVGSVLDGKVKRLTSFGAFVEVFPGVEGLVHISQISHKH 326
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD ++V
Sbjct: 327 IATPHEVLHEGDEVQV 342
>gi|152966892|ref|YP_001362676.1| 30S ribosomal protein S1 [Kineococcus radiotolerans SRS30216]
gi|151361409|gb|ABS04412.1| RNA binding S1 domain protein [Kineococcus radiotolerans SRS30216]
Length = 505
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 136/247 (55%), Gaps = 20/247 (8%)
Query: 84 EEFHSALE---KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++ KY FN G V GT+ D L+DI K+ +P++E I H +
Sbjct: 24 EDFLAAVDATIKY-FND--GDIVSGTIVKVDRDEVLLDIGYKTEGVIPSRELSIKHDVDP 80
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E G+ G + E +++ + + + L+LS + QYE AW + D VV+G V+
Sbjct: 81 NEVVGV--GDEVEALVLQKEDKEGRLILSKKRAQYERAWGTIEAKKEADEVVEGVVIEVV 138
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK + K +E+D+ ++ +VLS R +
Sbjct: 139 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYVGKTIEAKIIELDKNRNNVVLSRRAWLEQ 197
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G V G V S+ +GAF+D+GG++GL+HVS++S + + V++
Sbjct: 198 TQSEVRQNFLTTLQKGQVRSGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVE 257
Query: 310 PGDTLKV 316
G + V
Sbjct: 258 VGQEVTV 264
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 9/105 (8%)
Query: 202 GVVAEVEGLRGFVPFSQISSKSTAEEL----LGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G ++ G+ G V S++S K +G+++ ++ ++VD ++ R+ LS + D
Sbjct: 227 GAFVDLGGVDGLVHVSELSWKHIDHPSEVVEVGQEVTVEVLDVDMDRERVSLSLKATQED 286
Query: 258 SQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
Q IG VV G V L P+GAF+ + GI GL+H+S+++
Sbjct: 287 PWQQFARTHAIGQVVPGKVTKLVPFGAFVRVDDGIEGLVHISELA 331
>gi|89895001|ref|YP_518488.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium hafniense Y51]
gi|423073651|ref|ZP_17062390.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium hafniense DP7]
gi|89334449|dbj|BAE84044.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|361855492|gb|EHL07460.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Desulfitobacterium hafniense DP7]
Length = 661
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 26/272 (9%)
Query: 61 NQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDF-----NSELGTKVKGTVFCTDNRGA 115
+ + EE Y + T ME +E H + D+ N G V GTV ++
Sbjct: 261 DWIIEEVYRKMST--MEN-----KETHEMMNMEDWAEGMQNLHRGALVTGTVVKINHDEV 313
Query: 116 LVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGENEADDSLVLSLRMIQY 174
VD+ KS + +E + ++ + IV G K V++ + + VLS R
Sbjct: 314 FVDLGWKSEGVIALKELTV--ASDLQTSDIVAIGDKISAVVLRVENEEGNPVLSKRRADE 371
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
A ++ ++L ++GKV KGG++ +V G+RGFVP SQI + + G+
Sbjct: 372 MAAVDKLKELAESKEEIQGKVADVVKGGLIVDV-GMRGFVPASQIQPGYVEDLNQFKGQT 430
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDI 284
L L+ +E D + R+VLS ++ + + QA L G VV G V+ L +GAF+DI
Sbjct: 431 LRLRVIEFDPAKRRVVLSQKEILQEEQAAKKEHLLATLQEGDVVSGVVKRLAQFGAFVDI 490
Query: 285 GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GG++GLLHVS I++ R+ + + GD ++V
Sbjct: 491 GGVDGLLHVSDIAYTRIKHPSEYVNVGDEVEV 522
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 122/240 (50%), Gaps = 17/240 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+A++K +E +++G V G +VD+ + ++P + + +VE+
Sbjct: 373 AAVDKLKELAESKEEIQGKVADVVKGGLIVDVGMR--GFVPASQI---QPGYVEDLNQFK 427
Query: 148 GLKEEFVIIGENEADDSLVLSLR-MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVV 204
G +I + A +VLS + ++Q E A ++ L + E VV G V + G
Sbjct: 428 GQTLRLRVIEFDPAKRRVVLSQKEILQEEQAAKKEHLLATLQEGDVVSGVVKRLAQFGAF 487
Query: 205 AEVEGLRGFVPFSQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMAD--- 257
++ G+ G + S I+ K +E + +G ++ ++ ++VD+EQ ++ L ++
Sbjct: 488 VDIGGVDGLLHVSDIAYTRIKHPSEYVNVGDEVEVQILKVDKEQGKISLGLKQLKPSPWE 547
Query: 258 -SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ + +GS+V G V + P+GAF+ + GI+ L+H+SQ+S RV + V++ GD ++
Sbjct: 548 IAPEKYALGSLVTGKVVRIAPFGAFVQLEDGIDALIHISQLSEKRVNKVEDVVKVGDMVQ 607
>gi|333905125|ref|YP_004478996.1| 30S ribosomal protein S1 [Streptococcus parauberis KCTC 11537]
gi|333120390|gb|AEF25324.1| 30S ribosomal protein S1 [Streptococcus parauberis KCTC 11537]
gi|456371072|gb|EMF49968.1| SSU ribosomal protein S1p [Streptococcus parauberis KRS-02109]
gi|457095237|gb|EMG25732.1| SSU ribosomal protein S1p [Streptococcus parauberis KRS-02083]
Length = 410
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ ++L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFEAKIKEVDAAENRFILSRREVIEEAAKEARQEVFSKLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A E +++ SE VV G V G ++ G+ G V +
Sbjct: 164 AENRFILSRREVIEEAAKEARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G+++ +K + +DEE R+ LS + + +L G VV
Sbjct: 224 ELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAQGDVVE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH+RV + VL G + V
Sbjct: 284 GKVKRLTDFGAFVEVLAGIDGLVHISQISHNRVENPKDVLSVGQEVTV 331
>gi|331002776|ref|ZP_08326290.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
107 str. F0167]
gi|330413265|gb|EGG92633.1| hypothetical protein HMPREF0491_01152 [Lachnospiraceae oral taxon
107 str. F0167]
Length = 232
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 94/150 (62%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPL 235
W+ ++ +E V K K+ KGG +A +E +R F+P SQ+S++ +E LGK L +
Sbjct: 31 WDVFEKMLTEKTVSKVKITEVVKGGCIAFLEEVRAFIPASQLSTQYVENLDEFLGKSLEV 90
Query: 236 KFVEVDEEQSRLVLSNR-----KAMADSQAQLG---IGSVVIGTVQSLKPYGAFIDIG-G 286
+ + + +LVLS+R +A + QA+ +G V+ G V S+K YGAFID+G G
Sbjct: 91 IVITAEPAKKKLVLSHRAIEKEEAKKERQAKFDSVKVGDVLEGKVDSIKDYGAFIDLGDG 150
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
I+GLLHVSQIS+ RV + A VL+ G+T+KV
Sbjct: 151 ISGLLHVSQISNQRVKNPAAVLKEGETVKV 180
>gi|329116949|ref|ZP_08245666.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
gi|326907354|gb|EGE54268.1| 30S ribosomal protein S1 [Streptococcus parauberis NCFD 2020]
Length = 407
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 95/156 (60%), Gaps = 12/156 (7%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R+ + ++ ++L
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFEAKIKEVDAAENRFILSRREVIEEAAKEARQEVFSKLSE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDR 300
GSVV GTV L +GAFID+GG++GL+HV+++SH+R
Sbjct: 194 GSVVTGTVARLTSFGAFIDLGGVDGLVHVTELSHER 229
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 88/168 (52%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ +LS R + E A E +++ SE VV G V G ++ G+ G V +
Sbjct: 164 AENRFILSRREVIEEAAKEARQEVFSKLSEGSVVTGTVARLTSFGAFIDLGGVDGLVHVT 223
Query: 218 QISSKSTAE----ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + +G+++ +K + +DEE R+ LS + + +L G VV
Sbjct: 224 ELSHERNVSPKSVVSVGEEVEVKVLSIDEEAGRVSLSLKATTPGPWDGVEQKLAQGDVVE 283
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ L +GAF+++ GI+GL+H+SQISH+RV + VL G + V
Sbjct: 284 GKVKRLTDFGAFVEVLAGIDGLVHISQISHNRVENPKDVLSVGQEVTV 331
>gi|160878183|ref|YP_001557151.1| RNA-binding S1 domain-containing protein [Clostridium
phytofermentans ISDg]
gi|160426849|gb|ABX40412.1| RNA binding S1 domain protein [Clostridium phytofermentans ISDg]
Length = 303
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 132/252 (52%), Gaps = 13/252 (5%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
M+ + T+++F + LE G VKGTV + VD++ S + +E +
Sbjct: 1 MDETNLTMDDFKTELEHSLKRLTEGDLVKGTVIGISDTEVTVDLSYSSEGIIKLEELS-N 59
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
+ +A + G + +I+ E++ + +L+LS + L+W++ + + +E V KV
Sbjct: 60 DPRFSIKADVTIGEEITAMILSEDK-EGNLLLSKKKADDILSWDKLKTMMTERTVTTVKV 118
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRK 253
A GGVV +EG+R F+P S +S + +GK L + + D+E ++LVLS ++
Sbjct: 119 SNAVNGGVVTYLEGIRAFIPASMLSLSYVEDVSTFVGKVLKVIVITADKEANKLVLSAKE 178
Query: 254 AMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADI 304
+ + +A Q+ G V G V L P+GAF+ IG G++GL+H+SQI R+
Sbjct: 179 VLREEEAKEKSHKISQVQKGIVTTGIVDKLMPFGAFVSIGEGLSGLVHISQICGKRIKSP 238
Query: 305 ATVLQPGDTLKV 316
A VL+ G +KV
Sbjct: 239 AEVLKEGQEVKV 250
>gi|400290418|ref|ZP_10792445.1| 30S ribosomal protein S1 [Streptococcus ratti FA-1 = DSM 20564]
gi|399921209|gb|EJN94026.1| 30S ribosomal protein S1 [Streptococcus ratti FA-1 = DSM 20564]
Length = 399
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 101/172 (58%), Gaps = 12/172 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EGLRGF+
Sbjct: 76 VVGKDTDTVTFLVSKKRLEARKAWDKLVGREGEVVTVKG--TRAVKGGLSVEFEGLRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S I ++ E+ +G++ K EVD ++R +LS R + + ++L +
Sbjct: 134 PASMIDTRFVRNTEKFVGQEFEAKIKEVDPAENRFILSRRDVVEAAAEEARKEVFSKLAV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G +V GTV L +GAFID+GG++GL+HV+++SH+R +V+ G+ ++V
Sbjct: 194 GDIVTGTVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVTVGEEIQV 245
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
+V G V G ++ G+ G V +++S + +G+++ +K + +DEE
Sbjct: 196 IVTGTVARLTSFGAFIDLGGVDGLVHVTELSHERNVSPKSVVTVGEEIQVKVLAIDEEAG 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + +L G V+ G V+ L +GAF+++ GI+GL+H+SQISH R
Sbjct: 256 RVSLSLKATTPGPWDGVEQKLAAGDVIEGKVKRLTDFGAFVEVLPGIDGLVHISQISHKR 315
Query: 301 VADIATVLQPGDTLKV 316
V + VL G + V
Sbjct: 316 VENPKDVLSVGQDVTV 331
>gi|297588505|ref|ZP_06947148.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
gi|297573878|gb|EFH92599.1| possible 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
[Finegoldia magna ATCC 53516]
Length = 675
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/229 (29%), Positives = 118/229 (51%), Gaps = 23/229 (10%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP------GLKEEFVII 156
VKG V + +V+I K+ + E E G +P G + E +I
Sbjct: 296 VKGEVIYVTDDEVMVNIGYKADGIIKLDELST-------EEGKLPKDLYKQGDEIEVYVI 348
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
++ + ++VLS + ++ W+ D V+ KV KGG++A ++ +R F+P
Sbjct: 349 KLDDGEGNVVLSTKRVEGIKNWKNLVSSFDNDSTVEAKVTQVVKGGLIATIDNVRAFIPG 408
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL--------GIGS 266
SQ+++ + + +G+ L K + +DE++ RLVLS+R + Q ++ +G
Sbjct: 409 SQVTTHFVKDLSKYVGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGE 468
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G VQ L +GAFID+GG++GLLH+S IS +R+ VL+ GD ++
Sbjct: 469 TITGKVQRLTDFGAFIDLGGVDGLLHISDISWNRIESPEDVLKVGDEIE 517
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 120/255 (47%), Gaps = 38/255 (14%)
Query: 83 LEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
++ + + + +D +S + KV V +G L+ A++P + H +K + +
Sbjct: 367 IKNWKNLVSSFDNDSTVEAKVTQVV-----KGGLIATIDNVRAFIPGSQVTTHFVKDLSK 421
Query: 143 AGIVPGLKEEFV--IIGENEADDSLVLSLRMI----QYEL---AWERCRQLQSEDVVVKG 193
+ E V ++ +E LVLS R + Q E+ AWE ++ + G
Sbjct: 422 Y-----VGETLVCKVLNIDEKKRRLVLSHRAVVEAEQKEIEDKAWENITVGET----ITG 472
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVL 249
KV G ++ G+ G + S IS + E++L G ++ ++ + E++R+ L
Sbjct: 473 KVQRLTDFGAFIDLGGVDGLLHISDISWNRIESPEDVLKVGDEIETLVLKANREKNRISL 532
Query: 250 SNRK-------AMADSQAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301
++ A ++ + G V+ G V +L +GAF+ + GI GL+HVS+IS++ V
Sbjct: 533 GLKQLQQKPFDAFVENNHE---GDVIEGEVVNLVDFGAFVKLAEGIEGLVHVSEISNEHV 589
Query: 302 ADIATVLQPGDTLKV 316
+ L GDT+KV
Sbjct: 590 DKPSDELNIGDTVKV 604
>gi|56695704|ref|YP_166055.1| 30S ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
gi|56677441|gb|AAV94107.1| ribosomal protein S1 [Ruegeria pomeroyi DSS-3]
Length = 558
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 127/247 (51%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
++EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 5 SMEEFEALLNESFEMDTPEEGSVVKGKVIAIEAGQAIIDVGYKMEGRVELKEFA----NP 60
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E I G + E + A V+S M + E AW+R + ++D V+G + G
Sbjct: 61 GEAPEISIGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDQRVEGAIFGRV 120
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV +L
Sbjct: 181 SRAEQRAEVIGNLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPNEILN 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETVKV 247
>gi|225377348|ref|ZP_03754569.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
gi|225210879|gb|EEG93233.1| hypothetical protein ROSEINA2194_02996 [Roseburia inulinivorans DSM
16841]
Length = 300
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/245 (29%), Positives = 130/245 (53%), Gaps = 12/245 (4%)
Query: 82 TLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE 141
T+++F LE G + GTV +D+ + + ++ V
Sbjct: 3 TMDDFKDELEASFRQIREGDIITGTVIAVSEEEITLDLKYYAQGIIKVEDFSNDPDFAVL 62
Query: 142 EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKG 201
E I G + E ++ ++ +++LS + LAWE+ +Q+ + VVK ++ +
Sbjct: 63 EQ-IHAGDEIEATVVKTDDGQGNILLSRKEANDVLAWEKLQQMMEDGTVVKVRIKESVPS 121
Query: 202 GVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRK-----A 254
GVV +EG+R F+P SQ++ EE +GK++ K + VD E+ +LVLS ++ A
Sbjct: 122 GVVTFLEGIRAFIPASQLALDYVENTEEWIGKEVEAKVITVDPEKEKLVLSAKQVAKEAA 181
Query: 255 MADSQAQLGI---GSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQP 310
+ + ++ + G+V+ GTV+SL PYGAFI++G G++GL+H+SQI R+ + VL+
Sbjct: 182 IEERNHKISMIVPGTVMEGTVESLMPYGAFINLGNGLSGLVHISQICERRIKKPSEVLKE 241
Query: 311 GDTLK 315
G +K
Sbjct: 242 GQKVK 246
>gi|84683354|ref|ZP_01011257.1| 30S ribosomal protein S1 [Maritimibacter alkaliphilus HTCC2654]
gi|84668097|gb|EAQ14564.1| 30S ribosomal protein S1 [Maritimibacter alkaliphilus HTCC2654]
Length = 554
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 125/246 (50%), Gaps = 16/246 (6%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E + ++ + GT VKG V + A++D+ K + +E
Sbjct: 1 MEEFEALLNESLEMDTPDEGTVVKGKVIAVEAGQAIIDVGYKMEGRVDLKEFA----NPG 56
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E I G + E + A V+S M + E AW+R + ++D V+G + G K
Sbjct: 57 EAPDITVGDEVEVYLRAAENARGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRVK 116
Query: 201 GGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +S
Sbjct: 117 GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEES 176
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 177 RAEQRAEVIGNLSEGQTVEGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILSI 236
Query: 311 GDTLKV 316
G+T+ V
Sbjct: 237 GETINV 242
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 109/208 (52%), Gaps = 16/208 (7%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 106 RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDRR 161
Query: 162 DDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R I E E+ ++ SE V+G V + G ++ G+ G + +
Sbjct: 162 RGNIVVSRRAILEESRAEQRAEVIGNLSEGQTVEGVVKNITEYGAFVDLGGVDGLLHVTD 221
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
++ + + E+L G+ + ++ +++++E R+ L ++ D A+ + SV G
Sbjct: 222 MAWRRVNHPSEILSIGETINVQVIKINKETHRISLGMKQLQEDPWDLVAAKYPLESVHKG 281
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 282 RVTNITDYGAFVELEPGVEGLVHVSEMS 309
>gi|430833535|ref|ZP_19451547.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430838908|ref|ZP_19456851.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430858583|ref|ZP_19476210.1| ribosomal protein S1 [Enterococcus faecium E1552]
gi|430486276|gb|ELA63135.1| ribosomal protein S1 [Enterococcus faecium E0679]
gi|430491309|gb|ELA67782.1| ribosomal protein S1 [Enterococcus faecium E0688]
gi|430545210|gb|ELA85196.1| ribosomal protein S1 [Enterococcus faecium E1552]
Length = 409
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 26 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 85
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 86 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 144
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 145 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKTVVENEREEKKKEILSTIHEG 204
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNV 255
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 206 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQE 265
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 266 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 325
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 326 IATPHEVLHEGDEVKV 341
>gi|406580147|ref|ZP_11055365.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|406582367|ref|ZP_11057492.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|406584611|ref|ZP_11059636.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|406589505|ref|ZP_11063940.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410937808|ref|ZP_11369667.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
gi|404454526|gb|EKA01454.1| 30S ribosomal protein S1 [Enterococcus sp. GMD4E]
gi|404458219|gb|EKA04666.1| 30S ribosomal protein S1 [Enterococcus sp. GMD3E]
gi|404463841|gb|EKA09420.1| 30S ribosomal protein S1 [Enterococcus sp. GMD2E]
gi|404470775|gb|EKA15370.1| 30S ribosomal protein S1 [Enterococcus sp. GMD1E]
gi|410733941|gb|EKQ75863.1| 30S ribosomal protein S1 [Enterococcus sp. GMD5E]
Length = 409
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 26 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 85
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 86 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 144
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 145 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNV 255
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 206 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQE 265
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 266 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 325
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 326 IATPHEVLHEGDEVKV 341
>gi|260559045|ref|ZP_05831231.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|293556738|ref|ZP_06675301.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|293563396|ref|ZP_06677845.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|293568054|ref|ZP_06679392.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|294614847|ref|ZP_06694742.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|294618678|ref|ZP_06698212.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|294621936|ref|ZP_06701084.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|314942007|ref|ZP_07848868.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|314991835|ref|ZP_07857293.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|314995876|ref|ZP_07860963.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|383328526|ref|YP_005354410.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|415894979|ref|ZP_11550475.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|424786294|ref|ZP_18213084.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|424938690|ref|ZP_18354462.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|424956864|ref|ZP_18371621.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|424973500|ref|ZP_18386777.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|424980623|ref|ZP_18393405.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|424983213|ref|ZP_18395813.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|424986625|ref|ZP_18399034.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|424989623|ref|ZP_18401883.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|424998474|ref|ZP_18410158.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|425001445|ref|ZP_18412960.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|425011585|ref|ZP_18422476.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|425013337|ref|ZP_18424073.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|425020476|ref|ZP_18430780.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|425022907|ref|ZP_18433060.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|425031841|ref|ZP_18436942.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|427395181|ref|ZP_18888103.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430820410|ref|ZP_19439042.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430821943|ref|ZP_19440524.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430825063|ref|ZP_19443274.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430830280|ref|ZP_19448338.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430836240|ref|ZP_19454223.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430844532|ref|ZP_19462430.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430846512|ref|ZP_19464371.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430850112|ref|ZP_19467878.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430852811|ref|ZP_19470542.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430854381|ref|ZP_19472094.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430861941|ref|ZP_19479293.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430864427|ref|ZP_19480349.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430870377|ref|ZP_19483232.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430958937|ref|ZP_19486801.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|431193736|ref|ZP_19500243.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|431259185|ref|ZP_19505362.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|431295479|ref|ZP_19507367.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|431368570|ref|ZP_19509384.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|431436377|ref|ZP_19513076.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|431503059|ref|ZP_19515295.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|431539188|ref|ZP_19517692.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|431626809|ref|ZP_19523048.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|431743456|ref|ZP_19532335.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|431748753|ref|ZP_19537508.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|431754384|ref|ZP_19543045.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|431758862|ref|ZP_19547483.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|431766288|ref|ZP_19554781.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|431766752|ref|ZP_19555213.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|431770371|ref|ZP_19558771.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|431772892|ref|ZP_19561228.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|431776242|ref|ZP_19564509.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|431778301|ref|ZP_19566512.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|431782343|ref|ZP_19570478.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|431785272|ref|ZP_19573298.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|447912882|ref|YP_007394294.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
gi|260074802|gb|EEW63118.1| ribosomal protein S1 [Enterococcus faecium C68]
gi|291589275|gb|EFF21085.1| 30S ribosomal protein S1 [Enterococcus faecium E1071]
gi|291592309|gb|EFF23923.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1636]
gi|291595061|gb|EFF26404.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1679]
gi|291598485|gb|EFF29554.1| putative 30S ribosomal protein S1 [Enterococcus faecium U0317]
gi|291601070|gb|EFF31359.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1039]
gi|291604657|gb|EFF34142.1| putative 30S ribosomal protein S1 [Enterococcus faecium E1162]
gi|313589980|gb|EFR68825.1| putative ribosomal protein S1 [Enterococcus faecium TX0133a01]
gi|313593646|gb|EFR72491.1| putative ribosomal protein S1 [Enterococcus faecium TX0133B]
gi|313599259|gb|EFR78104.1| putative ribosomal protein S1 [Enterococcus faecium TX0133C]
gi|364091873|gb|EHM34296.1| putative 30S ribosomal protein S1 [Enterococcus faecium E4453]
gi|378938220|gb|AFC63292.1| 30S ribosomal protein S1 [Enterococcus faecium Aus0004]
gi|402923340|gb|EJX43637.1| putative ribosomal protein S1 [Enterococcus faecium V689]
gi|402936419|gb|EJX55600.1| putative ribosomal protein S1 [Enterococcus faecium R496]
gi|402944868|gb|EJX63257.1| putative ribosomal protein S1 [Enterococcus faecium R446]
gi|402958458|gb|EJX75771.1| putative ribosomal protein S1 [Enterococcus faecium P1137]
gi|402966069|gb|EJX82740.1| putative ribosomal protein S1 [Enterococcus faecium ERV99]
gi|402972211|gb|EJX88429.1| putative ribosomal protein S1 [Enterococcus faecium ERV69]
gi|402976087|gb|EJX92008.1| putative ribosomal protein S1 [Enterococcus faecium ERV38]
gi|402981505|gb|EJX97031.1| putative ribosomal protein S1 [Enterococcus faecium ERV26]
gi|402982909|gb|EJX98342.1| putative ribosomal protein S1 [Enterococcus faecium ERV165]
gi|402986636|gb|EJY01750.1| putative ribosomal protein S1 [Enterococcus faecium ERV161]
gi|402996323|gb|EJY10715.1| putative ribosomal protein S1 [Enterococcus faecium E422]
gi|403001339|gb|EJY15400.1| putative ribosomal protein S1 [Enterococcus faecium E417]
gi|403009171|gb|EJY22635.1| putative ribosomal protein S1 [Enterococcus faecium C497]
gi|403011657|gb|EJY24951.1| putative ribosomal protein S1 [Enterococcus faecium C1904]
gi|403014602|gb|EJY27590.1| putative ribosomal protein S1 [Enterococcus faecium 515]
gi|425724317|gb|EKU87201.1| ribosomal protein S1 [Enterococcus durans FB129-CNAB-4]
gi|430439541|gb|ELA49877.1| ribosomal protein S1 [Enterococcus faecium E0045]
gi|430443775|gb|ELA53737.1| ribosomal protein S1 [Enterococcus faecium E0120]
gi|430446564|gb|ELA56232.1| ribosomal protein S1 [Enterococcus faecium E0164]
gi|430482882|gb|ELA59981.1| ribosomal protein S1 [Enterococcus faecium E0333]
gi|430488597|gb|ELA65259.1| ribosomal protein S1 [Enterococcus faecium E0680]
gi|430497122|gb|ELA73181.1| ribosomal protein S1 [Enterococcus faecium E1050]
gi|430536144|gb|ELA76521.1| ribosomal protein S1 [Enterococcus faecium E1185]
gi|430538959|gb|ELA79228.1| ribosomal protein S1 [Enterococcus faecium E1133]
gi|430541645|gb|ELA81790.1| ribosomal protein S1 [Enterococcus faecium E1258]
gi|430548040|gb|ELA87945.1| ribosomal protein S1 [Enterococcus faecium E1392]
gi|430549232|gb|ELA89064.1| ribosomal protein S1 [Enterococcus faecium E1573]
gi|430553974|gb|ELA93648.1| ribosomal protein S1 [Enterococcus faecium E1574]
gi|430556622|gb|ELA96119.1| ribosomal protein S1 [Enterococcus faecium E1576]
gi|430559030|gb|ELA98412.1| ribosomal protein S1 [Enterococcus faecium E1575]
gi|430572146|gb|ELB11012.1| ribosomal protein S1 [Enterococcus faecium E1620]
gi|430577280|gb|ELB15885.1| ribosomal protein S1 [Enterococcus faecium E1623]
gi|430581569|gb|ELB20014.1| ribosomal protein S1 [Enterococcus faecium E1626]
gi|430584158|gb|ELB22508.1| ribosomal protein S1 [Enterococcus faecium E1627]
gi|430586974|gb|ELB25208.1| ribosomal protein S1 [Enterococcus faecium E1630]
gi|430587682|gb|ELB25903.1| ribosomal protein S1 [Enterococcus faecium E1634]
gi|430594451|gb|ELB32420.1| ribosomal protein S1 [Enterococcus faecium E1731]
gi|430603063|gb|ELB40606.1| ribosomal protein S1 [Enterococcus faecium E1904]
gi|430606888|gb|ELB44225.1| ribosomal protein S1 [Enterococcus faecium E2071]
gi|430613079|gb|ELB50102.1| ribosomal protein S1 [Enterococcus faecium E2297]
gi|430618978|gb|ELB55806.1| ribosomal protein S1 [Enterococcus faecium E2883]
gi|430626989|gb|ELB63532.1| ribosomal protein S1 [Enterococcus faecium E3346]
gi|430627064|gb|ELB63600.1| ribosomal protein S1 [Enterococcus faecium E4215]
gi|430631987|gb|ELB68278.1| ribosomal protein S1 [Enterococcus faecium E1321]
gi|430635298|gb|ELB71394.1| ribosomal protein S1 [Enterococcus faecium E1644]
gi|430637408|gb|ELB73424.1| ribosomal protein S1 [Enterococcus faecium E2369]
gi|430641576|gb|ELB77377.1| ribosomal protein S1 [Enterococcus faecium E2560]
gi|430643847|gb|ELB79550.1| ribosomal protein S1 [Enterococcus faecium E4389]
gi|430647678|gb|ELB83119.1| ribosomal protein S1 [Enterococcus faecium E6012]
gi|430647759|gb|ELB83198.1| ribosomal protein S1 [Enterococcus faecium E6045]
gi|445188591|gb|AGE30233.1| SSU ribosomal protein S1p [Enterococcus faecium NRRL B-2354]
Length = 409
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 123/231 (53%), Gaps = 14/231 (6%)
Query: 99 LGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-- 155
+G VKG V +++ +V I A +P +E ++ + E V + + VI
Sbjct: 26 VGDVVKGEVLVIEDKQVIVGIEGAGVEGVVPAKELSTLPVEDISEVVKVGDVLDLVVIST 85
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
IG+++ + S +LS R + + WE + E V++ V KGG+V +V G+RGFVP
Sbjct: 86 IGKDKENGSYLLSKRRLDAKKVWEDIERDFQEGKVIEAPVTNVVKGGLVVDV-GVRGFVP 144
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIG 265
S + A+ + GK L K +E++ ++RL+LS++ + + + + + G
Sbjct: 145 ASMVEDHFVADFSDYKGKTLSFKIIEIEPSENRLILSHKAVVENEREEKKKEILSTIHEG 204
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G V L +GAF+D+GGI+GL+HVS+ISH VA + VL D + V
Sbjct: 205 DVLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNV 255
Score = 67.4 bits (163), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 74/136 (54%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V+ G+V G ++ G+ G V S+IS A+ + D+ +K + ++ EQ
Sbjct: 206 VLSGRVARLTDFGAFVDLGGIDGLVHVSEISHSHVAKPSDVLAVNDDVNVKVLSINPEQE 265
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + +++ +G+V+ GTV+ L +GAF+++ G+ GL+H+SQISH
Sbjct: 266 RVSLSIKDTQPGPWSEIDTKAPVGTVLDGTVKRLTSFGAFVEVFPGVEGLVHISQISHKH 325
Query: 301 VADIATVLQPGDTLKV 316
+A VL GD +KV
Sbjct: 326 IATPHEVLHEGDEVKV 341
>gi|393774527|ref|ZP_10362889.1| 30S ribosomal protein S1 [Novosphingobium sp. Rr 2-17]
gi|392720010|gb|EIZ77513.1| 30S ribosomal protein S1 [Novosphingobium sp. Rr 2-17]
Length = 574
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/229 (29%), Positives = 120/229 (52%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGT+ +N A++D+ KS + +E + +H G+ G + E +
Sbjct: 30 GRVVKGTITAIENDKAVIDVGLKSEGRVSLREFARGEGEH----GLKVGDEVEVYVDRVE 85
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
AD +LS + E AW++ E V+G + G KGG +++G F+P SQ+
Sbjct: 86 NADGEAMLSRDRARREAAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDGAVAFLPGSQV 145
Query: 220 SSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + L+ P + +++D + +V+S R + +++A+ L G V+
Sbjct: 146 DIRPVRDVAPLMDVPQPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLTEGQVID 205
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + V+ GDT+KV +
Sbjct: 206 GVVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQI 254
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 16/222 (7%)
Query: 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP 147
+A +K + G +V+G +F G VD+ + A+LP + I ++ V VP
Sbjct: 102 AAWDKLESEFGEGKRVEGVIFGRVKGGFTVDLDG-AVAFLPGSQVDIRPVRDVAPLMDVP 160
Query: 148 GLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVV 204
+ F I+ + ++V+S R + E E+ +L +E V+ G V G
Sbjct: 161 ---QPFQILKMDRRRGNIVVSRRAVLEETRAEQRSELIDKLTEGQVIDGVVKNITDYGAF 217
Query: 205 AEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD--- 257
++ G+ G + + +S K +G + ++ + ++ E R+ L ++ +D
Sbjct: 218 VDLGGIDGLLHVTDMSYKRVNHPSEVIAIGDTVKVQIIRINSETQRISLGMKQLESDPWE 277
Query: 258 -SQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ + +G+ + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 278 GASVKYPVGAKLQGTVTNITEYGAFVELEAGIEGLVHVSEMS 319
>gi|269216208|ref|ZP_06160062.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
gi|402828817|ref|ZP_10877702.1| 30S ribosomal protein S1 [Slackia sp. CM382]
gi|269130467|gb|EEZ61545.1| 30s ribosomal protein s1 [Slackia exigua ATCC 700122]
gi|402285975|gb|EJU34455.1| 30S ribosomal protein S1 [Slackia sp. CM382]
Length = 399
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 128/233 (54%), Gaps = 14/233 (6%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
DF+ G VKGTV ++ L+DI KS +P++E I K E + G + E
Sbjct: 30 DFDE--GDLVKGTVVQIEHDEVLLDIGFKSEGVIPSRELSIRKDADPSEI-VALGDEIEA 86
Query: 154 VIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGF 213
+++ + + + L+LS + +YE AW + V G+V+ KGG++ ++ GLRGF
Sbjct: 87 LVLQKEDKEGRLILSKKRAEYERAWISVEEKFKAGEAVTGEVIEVVKGGLIIDI-GLRGF 145
Query: 214 VPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLG 263
+P S + + + LG +L + +E+D ++ +VLS R + + + ++L
Sbjct: 146 LPASLVDLRRVKDLDMYLGTELEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSKLT 205
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G + GTV S+ +GAF+D+GGI+GL+H+S++S + V + V++ G ++V
Sbjct: 206 KGMRLKGTVSSIVDFGAFVDLGGIDGLVHISELSWNHVNHPSEVVKVGQEVEV 258
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 115/229 (50%), Gaps = 17/229 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V G ++DI + +LP A + ++ V++ + G + E +I +
Sbjct: 121 GEAVTGEVIEVVKGGLIIDIGLR--GFLP---ASLVDLRRVKDLDMYLGTELEARVIEMD 175
Query: 160 EADDSLVLSLRMIQYE-LAWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+++VLS R++ E ER L ++ + +KG V G ++ G+ G V
Sbjct: 176 RNRNNVVLSRRVLLEEGRKNERAEILSKLTKGMRLKGTVSSIVDFGAFVDLGGIDGLVHI 235
Query: 217 SQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVV 268
S++S +G+++ ++ ++VD + R+ L ++ D +L +GSV+
Sbjct: 236 SELSWNHVNHPSEVVKVGQEVEVEVLDVDLSRERISLGLKQTTPDPWIKLVESYPVGSVI 295
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V + P+GAF+++G + GL+H+S+++ R+ A V++ G +KV
Sbjct: 296 DGKVTKIVPFGAFVELGSNVEGLVHISEMAPRRIETPAQVVKVGQEVKV 344
>gi|355673767|ref|ZP_09059242.1| hypothetical protein HMPREF9469_02279 [Clostridium citroniae
WAL-17108]
gi|354814480|gb|EHE99080.1| hypothetical protein HMPREF9469_02279 [Clostridium citroniae
WAL-17108]
Length = 269
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 87/150 (58%), Gaps = 11/150 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTA--EELLGKDLPL 235
W + +Q+ + VVK K+ A KGGVV +E +R F+P SQ+S++ E+ GK +
Sbjct: 69 WAQFQQMMDDRTVVKVKISEAVKGGVVTTLEEVRAFIPASQLSTEYVEKLEDWQGKYVEC 128
Query: 236 KFVEVDEEQSRLVLSNRKAMADSQA--------QLGIGSVVIGTVQSLKPYGAFIDIG-G 286
+ VD E+ RLVLS R+ + + Q G VV GTV S+KPYGAF+ + G
Sbjct: 129 IIITVDPEKKRLVLSGREVEREKKEAEKKARMEQFKAGDVVEGTVDSIKPYGAFVKLADG 188
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKV 316
++GLLH+SQIS R+ VL G T+KV
Sbjct: 189 VDGLLHISQISTQRIKHPGAVLTEGQTVKV 218
>gi|304440262|ref|ZP_07400152.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
gi|304371311|gb|EFM24927.1| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Peptoniphilus
duerdenii ATCC BAA-1640]
Length = 671
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 139/260 (53%), Gaps = 29/260 (11%)
Query: 82 TLEEFHSALEKYDFNSEL------------GTKVKGTV-FCTDNRGALVDITAKSSAYLP 128
++E S++E +D N + G V+G V + TDN +V+I +S +
Sbjct: 260 VIKEAVSSMENFDNNEMMEAIENSFKRVRRGEIVEGEVLYVTDNE-IMVNIGYRSDGIVS 318
Query: 129 TQEACIHKIKHVEEAGIV-PGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSE 187
+E + V+ + + PG + +I ++ D ++VLS + ++ W+ Q
Sbjct: 319 REELSSNP--DVKPSDLFKPGDTIQVYVIKIDDGDGNVVLSHKRVEAMKVWDEFEQKFEN 376
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQS 245
V V KGG+ A+V+GL+ F+P S ++ + + + +G+DL + ++ D+ +
Sbjct: 377 KENVVAHVKNVVKGGLTADVDGLKAFIPASHVAMRFQRDLNKFVGQDLECEIIDFDKAKR 436
Query: 246 RLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
R+VLS RK + + Q ++L G V+ GTVQ L +GAF+D+GG++GL+H+S++
Sbjct: 437 RIVLS-RKNIEEKQFEDTRKEVFSKLHEGDVIEGTVQRLTDFGAFVDVGGVDGLIHISEM 495
Query: 297 SHDRVADIATVLQPGDTLKV 316
S +R+ + V+ PG+ ++V
Sbjct: 496 SWNRIKHPSEVVAPGENVEV 515
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 92/174 (52%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMI---QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
II ++A +VLS + I Q+E + E V++G V G +V G+
Sbjct: 428 IIDFDKAKRRIVLSRKNIEEKQFEDTRKEVFSKLHEGDVIEGTVQRLTDFGAFVDVGGVD 487
Query: 212 GFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQSRLVL----SNRKAMADSQAQLG 263
G + S++S K +E + G+++ ++ + +DEE++R+ L + ++ + + +
Sbjct: 488 GLIHISEMSWNRIKHPSEVVAPGENVEVQILNLDEEKNRIALGLKQTTKRPWDEFVSSVE 547
Query: 264 IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
+G V G V +L +GAF+ + G++GLLHVSQIS D + A +L GD + V
Sbjct: 548 VGDTVTGHVVNLLDFGAFVRLESGVDGLLHVSQISRDHIEKPADILNIGDEVTV 601
>gi|83952621|ref|ZP_00961351.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
gi|83835756|gb|EAP75055.1| 30S ribosomal protein S1 [Roseovarius nubinhibens ISM]
Length = 554
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 127/246 (51%), Gaps = 16/246 (6%)
Query: 83 LEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV 140
+EEF + L E ++ ++ E G+ VKG V + A++D+ K + +E
Sbjct: 1 MEEFEALLNESFEMDTPEEGSVVKGKVIAVEAGQAIIDVGYKMEGRVDLKEFA----NPG 56
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E I G + E + A V+S M + E AW+R + ++++ V G + G K
Sbjct: 57 ETPEIAVGDEVEVFLRAAENARGEAVISREMARREEAWDRLEKAYADELRVDGAIFGRVK 116
Query: 201 GGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
GG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +S
Sbjct: 117 GGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEES 176
Query: 259 QAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQP 310
+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 177 RAEQRAEVIGNLTEGQAVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAI 236
Query: 311 GDTLKV 316
G+T+KV
Sbjct: 237 GETVKV 242
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/226 (26%), Positives = 115/226 (50%), Gaps = 19/226 (8%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK + EL +V G +F G VD+ + A+LP + ++ V +A
Sbjct: 91 EEAWDRLEKA-YADEL--RVDGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDA 143
Query: 144 GIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANK 200
G + GLK+ F I+ + ++V+S R I E E+ ++ +E V G V +
Sbjct: 144 GPLMGLKQPFQILKMDRRRGNIVVSRRAILEESRAEQRAEVIGNLTEGQAVDGVVKNITE 203
Query: 201 GGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA 256
G ++ G+ G + + ++ + + E+L G+ + ++ +++++E R+ L ++
Sbjct: 204 YGAFVDLGGVDGLLHVTDMAWRRVNHPSEILAIGETVKVQVIKINKETHRISLGMKQLQD 263
Query: 257 DSQAQLG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
D +G + SV G V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 264 DPWDLVGAKYPLSSVHTGRVTNITDYGAFVELEPGVEGLVHVSEMS 309
>gi|317495376|ref|ZP_07953745.1| S1 RNA binding domain-containing protein [Gemella morbillorum M424]
gi|316914435|gb|EFV35912.1| S1 RNA binding domain-containing protein [Gemella morbillorum M424]
Length = 404
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 93/154 (60%), Gaps = 10/154 (6%)
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
EL+W + + + + V G KGG++A+VEGLR F+P S I +K + + +G++
Sbjct: 108 ELSWTQLIEKFEKGEFITATVSGQTKGGLLADVEGLRAFIPGSYIDTKFRKDLSKFVGQE 167
Query: 233 LPLKFVEVDEEQSRLVLSNR--------KAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI 284
K EVD+++++++L+ R K +A+ + G V+ G V + +GAFI++
Sbjct: 168 YTFKIEEVDKDKNKIILNRRVILEEERAKKLAEVYGNINEGDVIEGKVSRITDFGAFINL 227
Query: 285 GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G ++GLLH+S+ISH RV+ ++ VL GD +KV +
Sbjct: 228 GEVDGLLHISEISHARVSKVSDVLAVGDVVKVAV 261
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 91/169 (53%), Gaps = 18/169 (10%)
Query: 163 DSLVLSLRMIQYELAWERCRQLQ------SEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ ++L+ R+I L ER ++L +E V++GKV G + + G +
Sbjct: 180 NKIILNRRVI---LEEERAKKLAEVYGNINEGDVIEGKVSRITDFGAFINLGEVDGLLHI 236
Query: 217 SQIS----SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVV 268
S+IS SK + +G + + + VD+E ++ LS + + ++A + +G V+
Sbjct: 237 SEISHARVSKVSDVLAVGDVVKVAVISVDKENEKISLSAKTLLPTQWEVARATIKVGDVL 296
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V++ +GAF+++ + GL+H+SQ+SH+RV ++ VL+ GD + V
Sbjct: 297 EGVVRNTTAFGAFVEVMDDVEGLVHISQLSHERVDNVEDVLKKGDKVTV 345
>gi|406965785|gb|EKD91382.1| hypothetical protein ACD_30C00015G0002 [uncultured bacterium]
Length = 373
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/225 (29%), Positives = 124/225 (55%), Gaps = 13/225 (5%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +V G + + ++D+ KS LP ++ + +++ V FVI EN
Sbjct: 45 GQEVDGEIVSISDNEIILDLGTKSEGVLPKRDLSPEQAANLK----VGDKLLTFVIQTEN 100
Query: 160 EADDSLVLSLRMIQYELA--WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
E+ ++ R ++ + W + + V+KGK + N+GG++ EVEG+RGF+P S
Sbjct: 101 ESGQVVLGLQRSLKTKTPSQWYKFEAALKSNSVLKGKALELNRGGLIVEVEGIRGFLPSS 160
Query: 218 QI--SSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGT 271
Q+ S + EEL+GKD+ + +EV+ Q+RL+ S + ++ ++ ++L G + G
Sbjct: 161 QVTLSQAANLEELVGKDVDVTPIEVEANQNRLIFSQKTTVSEDIKENLSKLKAGDEIKGV 220
Query: 272 VQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
V ++ P+G F+ + G+ GL+HVS+IS ++ D + V + GD +K
Sbjct: 221 VAAVLPFGIFVTLQSGVEGLVHVSEISWEKTEDPSLVYKVGDEVK 265
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 16/202 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171
NRG L+ +LP+ + + + ++EE + G + I + L+ S +
Sbjct: 142 NRGGLIVEVEGIRGFLPSSQVTLSQAANLEE---LVGKDVDVTPIEVEANQNRLIFSQKT 198
Query: 172 IQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSKSTAEELL- 229
E E +L++ D + KG V G+ ++ G+ G V S+IS + T + L
Sbjct: 199 TVSEDIKENLSKLKAGDEI-KGVVAAVLPFGIFVTLQSGVEGLVHVSEISWEKTEDPSLV 257
Query: 230 ---GKDLPLKFVEVDEEQSRLVLSNRKAMAD----SQAQLGIGSVVIGTVQSLKPYGAFI 282
G ++ K + V+ R LS R+ ++D L +V GTV + G +
Sbjct: 258 YKVGDEVKAKVLSVETNTGRANLSIRQLVSDPFKDKAKDLQADDIVKGTVTKVSTQGISV 317
Query: 283 DI-GGINGLLHVSQISHDRVAD 303
+ GGI G++H S+I D AD
Sbjct: 318 SLEGGIEGMIHSSKI--DNPAD 337
>gi|365873627|ref|ZP_09413160.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
gi|363983714|gb|EHM09921.1| ribosomal protein S1 [Thermanaerovibrio velox DSM 12556]
Length = 499
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/247 (28%), Positives = 126/247 (51%), Gaps = 16/247 (6%)
Query: 84 EEFHSALEKYD-FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK--IKHV 140
E S +E+ D N G+ V+GTV G LVD+ K +LP +E H+ ++ V
Sbjct: 18 ETMESIMEQIDSVNIHRGSVVEGTVVDAREDGWLVDVGYKCEGFLPKRE-WTHRAIVEKV 76
Query: 141 EEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANK 200
E + ++ + +G+ E + L LS +++ W + ++ V++ + + K
Sbjct: 77 GEPQVGDRIRVQVTNVGQGE-EAQLSLSRWRCEFDERWNALEEKLAQSDVIEVEGIRKVK 135
Query: 201 GGVVAEVEGLRGFVPFSQISSKS---TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA- 256
GG++ + GL GF+P S ++ + L+GK P+K VE D + RLVLS R +
Sbjct: 136 GGLIVDCCGLEGFIPISHLAEEGRGINPANLVGKTFPVKLVEKDRRKRRLVLSRRSILEE 195
Query: 257 -------DSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
D A + G ++ G V S+ +G F+++G + GL+HV+++S R A ++Q
Sbjct: 196 ELSSLREDFYANVHEGDILEGDVSSVTSFGVFVNLGALEGLVHVTELSWQRGAKAKDIVQ 255
Query: 310 PGDTLKV 316
GD ++V
Sbjct: 256 KGDRVRV 262
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
+++G V GV + L G V +++S + + A++++ G + +K + +D E +
Sbjct: 213 ILEGDVSSVTSFGVFVNLGALEGLVHVTELSWQRGAKAKDIVQKGDRVRVKVIGIDRENN 272
Query: 246 RLVLSNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS ++A D ++ +G G V +L +GAF++I G+ GL+H+ +S R
Sbjct: 273 RISLSLKQAQEDPWVNVTSRWSVGQKTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSR 332
Query: 301 VADIATVLQPGDTLKVCL 318
V VL+ G ++V +
Sbjct: 333 VKHPKEVLRKGQEVEVVI 350
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 113/261 (43%), Gaps = 16/261 (6%)
Query: 66 EAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSA 125
E R R + S EE S E + N G ++G V + G V++ A
Sbjct: 177 EKDRRKRRLVLSRRSILEEELSSLREDFYANVHEGDILEGDVSSVTSFGVFVNLGALEGL 236
Query: 126 YLPTQEACIH--KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQ 183
T+ + K K + + G +K +IG + ++ + LSL+ Q E W
Sbjct: 237 VHVTELSWQRGAKAKDIVQKGDRVRVK----VIGIDRENNRISLSLKQAQ-EDPWVNVTS 291
Query: 184 LQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSKST--AEELL--GKDLPLKFV 238
S KG V G E+E G+ G + +S +E+L G+++ + +
Sbjct: 292 RWSVGQKTKGVVTNLADFGAFVEIEPGVEGLIHIGDLSWSRVKHPKEVLRKGQEVEVVIL 351
Query: 239 EVDEEQSRLVLSNRK---AMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVS 294
EVD E+ R+ L ++ + + VV V L +GAF+++ G+ GL+H+S
Sbjct: 352 EVDGERRRIGLGFKQLNDPWNNVAEKYSKDQVVNVKVVRLADFGAFVELEDGVEGLIHIS 411
Query: 295 QISHDRVADIATVLQPGDTLK 315
Q+S RV + VL+ G ++
Sbjct: 412 QLSRQRVEKPSDVLKEGQEVQ 432
>gi|103486980|ref|YP_616541.1| 30S ribosomal protein S1 [Sphingopyxis alaskensis RB2256]
gi|98977057|gb|ABF53208.1| SSU ribosomal protein S1P [Sphingopyxis alaskensis RB2256]
Length = 570
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 14/229 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G VKGTV +N A++DI KS +P +E + K A + G + E +
Sbjct: 29 GRVVKGTVTAIENDLAVIDIGLKSEGRVPLREFAMPGQK----ADLKVGDEVEVYVDRVE 84
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
A+ +LS + E AW+R + +++ V+G + G KGG ++ G F+P SQ+
Sbjct: 85 NANGETMLSRDRARREAAWDRLEEEFNKEARVEGVIFGRVKGGFTVDLGGAVAFLPGSQV 144
Query: 220 SSKSTAEELLGKDLPLKF--VEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
+ + DLP F +++D + +V+S R + +++A+ L G ++
Sbjct: 145 DIRPVRDVGPLMDLPQPFQILKMDRRRGNIVVSRRAILEETRAEQRSGLIQNLEEGQIIE 204
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ YGAF+D+GGI+GLLHV+ +S+ RV + ++ GDT+KV +
Sbjct: 205 GAVKNITDYGAFVDLGGIDGLLHVTDMSYKRVNHPSEIINIGDTVKVQI 253
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 111/216 (51%), Gaps = 18/216 (8%)
Query: 94 DFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEF 153
+FN E +V+G +F G VD+ + A+LP + I ++ V G + L + F
Sbjct: 109 EFNKE--ARVEGVIFGRVKGGFTVDLGG-AVAFLPGSQVDIRPVRDV---GPLMDLPQPF 162
Query: 154 VIIGENEADDSLVLSLRMIQYEL-AWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGL 210
I+ + ++V+S R I E A +R +Q+ E +++G V G ++ G+
Sbjct: 163 QILKMDRRRGNIVVSRRAILEETRAEQRSGLIQNLEEGQIIEGAVKNITDYGAFVDLGGI 222
Query: 211 RGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQL 262
G + + +S K + E++ G + ++ + ++ + R+ L ++ +D A+
Sbjct: 223 DGLLHVTDMSYKRVNHPSEIINIGDTVKVQIIRINRDTQRISLGMKQLESDPWEGVAAKY 282
Query: 263 GIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+G+ + GTV ++ YGAF+++ GI GL+HVS++S
Sbjct: 283 PVGAKLSGTVTNITDYGAFVELEPGIEGLVHVSEMS 318
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 26/219 (11%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N E G ++G V + GA VD+ L + ++ H E I G + I
Sbjct: 196 NLEEGQIIEGAVKNITDYGAFVDLGG-IDGLLHVTDMSYKRVNHPSEI-INIGDTVKVQI 253
Query: 156 IGENEADDSLVLSLRMIQYEL-AWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
I N D+ +SL M Q E WE + G V G E+E G+ G
Sbjct: 254 IRINR--DTQRISLGMKQLESDPWEGVAAKYPVGAKLSGTVTNITDYGAFVELEPGIEGL 311
Query: 214 VPFSQISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
V S++S ST++E+ + +EVD ++ R+ L ++A ++
Sbjct: 312 VHVSEMSWVKKNVHPGKIVSTSQEV-----EVIVLEVDSDKRRISLGLKQAQSNPWGAFA 366
Query: 264 ----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+GS+V G V++ +G FI + G ++G++H+S I+
Sbjct: 367 EAHPVGSIVEGEVKNATEFGLFIGLPGDVDGMVHMSDIA 405
>gi|256826974|ref|YP_003150933.1| 30S ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
gi|256583117|gb|ACU94251.1| SSU ribosomal protein S1P [Cryptobacterium curtum DSM 15641]
Length = 403
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 123/228 (53%), Gaps = 14/228 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
G V GTV + LVDI KS +P +E I K + + IV G E +++ +
Sbjct: 34 GDLVDGTVVKIERDEVLVDIGFKSEGVIPARELSIRK--DADPSDIVNLGDSIEALVLQK 91
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+ D L+LS + +YE AW + +V G+V+ KGG++ ++ GLRGF+P S
Sbjct: 92 EDKDGRLILSKKRAEYERAWISVEEKFKAGEIVSGEVIEVVKGGLILDI-GLRGFLPASL 150
Query: 219 ISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGIGSVV 268
+ + + LG L + +E+D ++ +VLS R + + + ++L G +
Sbjct: 151 VDLRRVKDLDMYLGTPLEARVIEMDRNRNNVVLSRRVLLEEGRKNERAEILSRLTKGMRL 210
Query: 269 IGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV S+ +GAF+D+GGI+GL+H+S++S V + V++ GD ++V
Sbjct: 211 KGTVSSIVDFGAFVDLGGIDGLVHISELSWSHVNHPSEVVKVGDEVEV 258
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 112/229 (48%), Gaps = 17/229 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V G ++DI + +LP A + ++ V++ + G E +I +
Sbjct: 121 GEIVSGEVIEVVKGGLILDIGLR--GFLP---ASLVDLRRVKDLDMYLGTPLEARVIEMD 175
Query: 160 EADDSLVLSLRMIQYE-LAWERCRQLQ--SEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+++VLS R++ E ER L ++ + +KG V G ++ G+ G V
Sbjct: 176 RNRNNVVLSRRVLLEEGRKNERAEILSRLTKGMRLKGTVSSIVDFGAFVDLGGIDGLVHI 235
Query: 217 SQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVV 268
S++S +G ++ ++ ++VD ++ R+ L ++ D +L +GS++
Sbjct: 236 SELSWSHVNHPSEVVKVGDEVEVQVLDVDLQRERISLGLKQTTEDPWVKLVESYPVGSII 295
Query: 269 IGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V P+GAF+++G + GL+H+S++++ + V+ GD +KV
Sbjct: 296 DGKVTKTVPFGAFVELGPNVEGLVHISEMANKHIEAPTQVVHAGDEVKV 344
>gi|311030567|ref|ZP_07708657.1| 30S ribosomal protein S1 [Bacillus sp. m3-13]
Length = 380
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 17/233 (7%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
N E+G V GTV + + LV I +K +P E HVE+A V +E
Sbjct: 12 NLEVGNTVTGTVTKVEEKQVLVSIEGSKLDGIIPISELSSL---HVEKATDVVSEGQELQ 68
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
+ ++ LVLS + + +LAWE ++ V + ++ KGG+V ++ G+RGFV
Sbjct: 69 LKVTKVEEELLVLSKKAVDADLAWEDLQKKFESKEVFEAEIKDVVKGGLVVDL-GVRGFV 127
Query: 215 PFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S + + + + GK L K VE+++E++R++LS+R A+ + + Q +
Sbjct: 128 PASLVENYFVDDFSDYKGKTLTFKVVELEKEKNRVILSHR-AVVEEEMQNKKHELLDTIE 186
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ + +GAF+DIGG++GL+H+SQ+S++ V + V+ G + V
Sbjct: 187 TGQVLEGTVQRITDFGAFVDIGGVDGLVHISQLSYEHVGKPSDVVTEGQKVNV 239
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
V++G V G ++ G+ G V SQ+S + + G+ + +K + VD +
Sbjct: 190 VLEGTVQRITDFGAFVDIGGVDGLVHISQLSYEHVGKPSDVVTEGQKVNVKVLSVDRDNE 249
Query: 246 RLVLSNRKAMADSQAQ----LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS ++ + +Q L GSV G V+ L +GAF+++ G+ GL+H+SQIS+
Sbjct: 250 RISLSIKETLPGPWSQVSEKLSAGSVTEGVVKRLVSFGAFVEVLPGVEGLVHISQISNKH 309
Query: 301 VADIATVLQPGDTLKV 316
+ VL GD ++V
Sbjct: 310 IGTPHEVLTEGDKVQV 325
>gi|384921550|ref|ZP_10021526.1| 30S ribosomal protein S1 [Citreicella sp. 357]
gi|384464642|gb|EIE49211.1| 30S ribosomal protein S1 [Citreicella sp. 357]
Length = 558
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 130/247 (52%), Gaps = 16/247 (6%)
Query: 82 TLEEFHSAL-EKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
T+EEF + L E + ++ + G+ VKG V + A++D+ K + +E
Sbjct: 5 TMEEFEALLNESLEMDTPDEGSVVKGKVIAIEAGQAIIDVGYKMEGRVDLKEFA--NPGE 62
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E G V + E ++ EN A V+S M + E AW+R + ++D V+G + G
Sbjct: 63 TPEIG-VGDVVEVYLRSAEN-ARGEAVISREMARREEAWDRLEKAYADDARVEGAIFGRV 120
Query: 200 KGGVVAEVEGLRGFVPFSQISSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG ++ G F+P SQ+ + A L+G P + +++D + +V+S R + +
Sbjct: 121 KGGFTVDLGGAVAFLPGSQVDVRPVRDAGPLMGLKQPFQILKMDRRRGNIVVSRRAILEE 180
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
S+A+ L G V G V+++ YGAF+D+GG++GLLHV+ ++ RV + +L
Sbjct: 181 SRAEQRAEVIANLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTDMAWRRVNHPSEILA 240
Query: 310 PGDTLKV 316
G+T+KV
Sbjct: 241 IGETVKV 247
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 109/208 (52%), Gaps = 16/208 (7%)
Query: 102 KVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+V+G +F G VD+ + A+LP + ++ V +AG + GLK+ F I+ +
Sbjct: 111 RVEGAIFGRVKGGFTVDLGG-AVAFLPGSQV---DVRPVRDAGPLMGLKQPFQILKMDRR 166
Query: 162 DDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++V+S R I E E+ ++ +E V G V + G ++ G+ G + +
Sbjct: 167 RGNIVVSRRAILEESRAEQRAEVIANLTEGQTVDGVVKNITEYGAFVDLGGVDGLLHVTD 226
Query: 219 ISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQ----AQLGIGSVVIG 270
++ + + E+L G+ + ++ +++++E R+ L ++ D A+ +GSV G
Sbjct: 227 MAWRRVNHPSEILAIGETVKVQVIKINKETHRISLGMKQLQEDPWDLVAAKYPLGSVHAG 286
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V ++ YGAF+++ G+ GL+HVS++S
Sbjct: 287 RVTNITDYGAFVELEPGVEGLVHVSEMS 314
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 58/229 (25%), Positives = 97/229 (42%), Gaps = 13/229 (5%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
LG+ G V + GA V++ + E K K+V IV +E V++ E
Sbjct: 280 LGSVHAGRVTNITDYGAFVELEPGVEGLVHVSEMSWTK-KNVHPGKIVSTSQEVDVMVLE 338
Query: 159 -NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPF 216
+ A + L L+ WE + E V+G+V + G+ ++G + G V
Sbjct: 339 IDPAKRRVSLGLKQTMRN-PWEVFAETHPEGTQVEGEVKNITEFGLFIGLDGEIDGMVHL 397
Query: 217 SQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMAD--SQAQLGI--GSV 267
S +S EE + G + EVD ++ R+ LS + D ++A G+ GS+
Sbjct: 398 SDLSWDQRGEEAIQEYRKGDVVQAVVTEVDTDKERISLSIKALGGDKFAEAAGGVKRGSI 457
Query: 268 VIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V TV +++ G ++ G+ + S +S DR GD L V
Sbjct: 458 VTVTVTAIEDGGIEVEYEGMKSFIRRSDLSRDRAEQRPERFSVGDHLDV 506
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,467,021,039
Number of Sequences: 23463169
Number of extensions: 174568049
Number of successful extensions: 563248
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 6521
Number of HSP's that attempted gapping in prelim test: 532388
Number of HSP's gapped (non-prelim): 18922
length of query: 318
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 176
effective length of database: 9,027,425,369
effective search space: 1588826864944
effective search space used: 1588826864944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 77 (34.3 bits)