BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021034
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P29344|RR1_SPIOL 30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea
GN=RPS1 PE=1 SV=1
Length = 411
Score = 524 bits (1349), Expect = e-148, Method: Compositional matrix adjust.
Identities = 255/319 (79%), Positives = 290/319 (90%), Gaps = 6/319 (1%)
Query: 1 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREE 59
MA+LAQQ G LRCPP+S++ LS+ S + L R + IVSAVA+SNA+TRER++
Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS----PKHTLKPRFS-PIVSAVAVSNAQTRERQK 55
Query: 60 LNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDI 119
L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDI
Sbjct: 56 LKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDI 115
Query: 120 TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWE 179
TAKSSAYLP EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWE
Sbjct: 116 TAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWE 175
Query: 180 RCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVE 239
RCRQLQ+EDVVVKGK+VGANKGGVVA VEGLRGFVPFSQISSKS+AEELL K++PLKFVE
Sbjct: 176 RCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVE 235
Query: 240 VDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
VDEEQSRLV+SNRKAMADSQAQLGIGSVV GTVQSLKPYGAFIDIGGINGLLHVSQISHD
Sbjct: 236 VDEEQSRLVMSNRKAMADSQAQLGIGSVVTGTVQSLKPYGAFIDIGGINGLLHVSQISHD 295
Query: 300 RVADIATVLQPGDTLKVCL 318
RV+DIATVLQPGDTLKV +
Sbjct: 296 RVSDIATVLQPGDTLKVMI 314
>sp|P73530|RS1A_SYNY3 30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1A PE=3 SV=1
Length = 328
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 117/241 (48%), Positives = 169/241 (70%), Gaps = 2/241 (0%)
Query: 79 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK 138
+ FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++
Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVD 69
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ V
Sbjct: 70 DPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFAT 128
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258
N+GG + +EGLRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RLVLS+R+A+ +
Sbjct: 129 NRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVER 188
Query: 259 QAQ-LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ L + VV+G+V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D +KV
Sbjct: 189 KMNGLEVAQVVVGSVRGIKPYGAFIDIGGVSGLLHISEISHDHIDTPHSVFNVNDEIKVM 248
Query: 318 L 318
+
Sbjct: 249 I 249
>sp|P46228|RS1_SYNP6 30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 /
PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4
Length = 307
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/245 (46%), Positives = 171/245 (69%), Gaps = 2/245 (0%)
Query: 75 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI 134
P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I
Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSI 66
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED V+ +
Sbjct: 67 NRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSE 125
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
V N+GG + +EGLRGF+P S IS++ E+L+G++LPLKF+EVDE+++RLVLS+R+A
Sbjct: 126 VFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRA 185
Query: 255 MADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDT 313
+ + + +L +G VV+G V+ +KPYGAFIDIGG++GLLH+S+ISHD + +V D
Sbjct: 186 LVERKMNRLEVGEVVVGAVRGIKPYGAFIDIGGVSGLLHISEISHDHIETPHSVFNVNDE 245
Query: 314 LKVCL 318
+KV +
Sbjct: 246 VKVMI 250
>sp|P51345|RR1_PORPU 30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea
GN=rps1 PE=3 SV=1
Length = 263
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 142/241 (58%), Gaps = 4/241 (1%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IK 138
SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ +
Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELN 66
Query: 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGA 198
+ I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ ++ G
Sbjct: 67 NFNSLNIND--TREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGF 124
Query: 199 NKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-AD 257
NKGG++ +EG+ GFVP S +++ S K + LK + V+E+ + L+LS+R+A+ A
Sbjct: 125 NKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRALIAQ 184
Query: 258 SQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVC 317
+ + L +G+++ G + + PYG FI G + GL+H+S+I+ +V I + + GDT+K
Sbjct: 185 ASSNLIVGNIIEGVINQITPYGLFIKAGNLKGLVHISEINVKQVERIPSQFKIGDTIKAV 244
Query: 318 L 318
+
Sbjct: 245 I 245
>sp|Q1XDE2|RR1_PORYE 30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis
GN=rps1 PE=3 SV=2
Length = 263
Score = 162 bits (409), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/240 (34%), Positives = 142/240 (59%), Gaps = 4/240 (1%)
Query: 81 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKH 139
FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ + +
Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNN 67
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
I EF ++ N L+LS+R ++Y AW+R RQL +ED ++ + G N
Sbjct: 68 FTSLNIND--TREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFN 125
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM-ADS 258
KGG++ +EG+ GFVP S + + +E+ K + LK + V+E+ + L+LS+R+A+ + +
Sbjct: 126 KGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRALISQA 185
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ L +G+++ G + + PYG FI +G + GL+H+S+I+ + I++ + GDT+K +
Sbjct: 186 SSNLIVGNIIEGIINQITPYGLFIKVGNLKGLVHISEINIKNLEQISSQFKIGDTIKAVI 245
>sp|O33698|RS1_SYNE7 30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC
7942) GN=rpsA PE=3 SV=1
Length = 295
Score = 161 bits (407), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 143/247 (57%), Gaps = 4/247 (1%)
Query: 74 APMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
+P + + ++F ALE +S+ G V+G V GA +DI K+ A+LP +EA
Sbjct: 2 SPSAANTPSYDDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAA 61
Query: 134 IHKIKHVEEAGIVPGLKE-EFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
+H + +E +P +E EF++I + D + +SLR + E AW R +LQ V+
Sbjct: 62 LHAVLDLE--AHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQ 119
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNR 252
KV G+NKGGV A++EGLR F+P S ++ K + L GK L + F+EV+ +LVLS R
Sbjct: 120 VKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSER 179
Query: 253 KAMADSQA-QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPG 311
+A + ++ +G ++ G V LKP+G F+D+GG LL ++QIS VAD+ + + G
Sbjct: 180 QAARTALVREIEVGQLINGKVTGLKPFGVFVDLGGATALLPINQISQKFVADVGAIFKIG 239
Query: 312 DTLKVCL 318
D ++ +
Sbjct: 240 DPIQALV 246
>sp|P74142|RS1B_SYNY3 30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rps1b PE=3 SV=1
Length = 305
Score = 155 bits (391), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 138/240 (57%), Gaps = 2/240 (0%)
Query: 80 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKH 139
+F+L+EF AL+K+D+++E G V G + N G VD KS ++P QE +
Sbjct: 9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAE 68
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
+E++ + +F++ E + + LS R +Q + +WE +L+ ++ V G N
Sbjct: 69 IEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTN 127
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRK-AMADS 258
KGGVV +VEGLRGF+P S + K + L+G+ L +E +++ ++LVL+ R+ A+S
Sbjct: 128 KGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRRIQQAES 187
Query: 259 QAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
++ G++ G V ++PYG F++I G+ GLLHVSQ+S RV + T+ G + V +
Sbjct: 188 MGKIAAGNIYEGKVAKIQPYGVFVEIEGVTGLLHVSQVSGTRVDSLNTLFAFGQAISVYV 247
>sp|P50889|RS1_LEULA 30S ribosomal protein S1 OS=Leuconostoc lactis GN=rps1 PE=2 SV=2
Length = 429
Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 89/264 (33%), Positives = 142/264 (53%), Gaps = 22/264 (8%)
Query: 71 CRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPT 129
CR ++ +S T EF +ALE ++G V G + DN A+V ++ +P
Sbjct: 27 CRRT-LDVMSETNNEFLAALESAADQIKVGDVVTGELLAIDNDNQAVVGLSTGEEGVVPA 85
Query: 130 QEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADD---SLVLSLRMIQYELAWERCRQLQ 185
+E + I +E I G E V+I +D + +LS + + AWE +
Sbjct: 86 REYSDDRNINLADELKI--GDTIEAVVISNVTSDKEGVAYLLSKKRLDARKAWENLSFAE 143
Query: 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELLGKDLPLKFVEVDEE 243
+ V KV+ A +GG++ +V G+RGFVP S ++ + S + KD+ + +E+D
Sbjct: 144 GD--TVDAKVINAVRGGLIVDVNGVRGFVPASMVAERFVSDLNQFKNKDIKAQVIEIDPA 201
Query: 244 QSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVS 294
+RL+LS RKA+A + ++L +G VV GTV L +GAF+D+GG++GL+HVS
Sbjct: 202 NARLILS-RKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDLGGVDGLVHVS 260
Query: 295 QISHDRVADIATVLQPGDTLKVCL 318
+ISHDRV + A VL GD + V +
Sbjct: 261 EISHDRVKNPADVLTKGDKVDVKI 284
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 80/136 (58%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEELL-GKDLPLKFVEVDEEQS 245
VV+G V G ++ G+ G V S+IS K+ A+ L G + +K + +D E+
Sbjct: 233 VVEGTVARLTDFGAFVDLGGVDGLVHVSEISHDRVKNPADVLTKGDKVDVKILALDTEKG 292
Query: 246 RLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS R ++ Q+ GSV+ GTV+ +K +GAF++I GI GL+HVSQIS+ R
Sbjct: 293 RISLSIKATQRGPWDEAADQIAAGSVLEGTVKRVKDFGAFVEILPGIEGLVHVSQISNKR 352
Query: 301 VADIATVLQPGDTLKV 316
+ + + VL+ GD ++V
Sbjct: 353 IENPSEVLKSGDKVQV 368
>sp|O06147|RS1_MYCTU 30S ribosomal protein S1 OS=Mycobacterium tuberculosis GN=rpsA PE=3
SV=1
Length = 481
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGTVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q++ L G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNNLQKGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
GD + V
Sbjct: 254 VGDEVTV 260
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKGTV G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGTVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E LQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNNLQ-KGTIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGDEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 75/168 (44%), Gaps = 10/168 (5%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + GT KG V N GA VD+ + E I H E +V E V
Sbjct: 205 NLQKGTIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSE--VVQVGDEVTVE 261
Query: 156 IGENEADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ + + D V LSL+ Q E W + + +V GKV G VE G+ G
Sbjct: 262 VLDVDMDRERVSLSLKATQ-EDPWRHFARTHAIGQIVPGKVTKLVPFGAFVRVEEGIEGL 320
Query: 214 VPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
V S+++ + ++++ G D +K +++D E+ R+ LS ++A D
Sbjct: 321 VHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|P38494|RS1H_BACSU 30S ribosomal protein S1 homolog OS=Bacillus subtilis (strain 168)
GN=ypfD PE=1 SV=1
Length = 382
Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 126/230 (54%), Gaps = 15/230 (6%)
Query: 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156
E+G VKG V +++ V+I K S +P E HVE+A V + +E +
Sbjct: 14 EVGDVVKGIVTKVEDKHVDVEIINVKQSGIIPISELSS---LHVEKASDVVKVDDELDLK 70
Query: 157 GENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
DD+L+LS R + + AWE + V + +V KGG+V ++ G+RGF+P
Sbjct: 71 VTKVEDDALILSKRAVDADRAWEDLEKKFETKEVFEAEVKDVVKGGLVVDI-GVRGFIPA 129
Query: 217 SQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGS 266
S + + + + GK L L VE+D +++R++LS+R + QA L +GS
Sbjct: 130 SLVEAHFVEDFTDYKGKTLSLLVVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGS 189
Query: 267 VVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V+ G VQ L +GAF+DIGGI+GL+H+SQ+SH V + V++ G +KV
Sbjct: 190 VLDGKVQRLTDFGAFVDIGGIDGLVHISQLSHSHVEKPSDVVEEGQEVKV 239
Score = 71.6 bits (174), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV 154
F +E+ VKG G +VDI + ++P A + + VE+ G +
Sbjct: 105 FEAEVKDVVKG--------GLVVDIGVR--GFIP---ASLVEAHFVEDFTDYKGKTLSLL 151
Query: 155 IIGENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLR 211
++ + + ++LS R +++ E A ++ LQS +V V+ GKV G ++ G+
Sbjct: 152 VVELDRDKNRVILSHRAVVESEQANKKQELLQSLEVGSVLDGKVQRLTDFGAFVDIGGID 211
Query: 212 GFVPFSQISSK------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
G V SQ+S EE G+++ +K + VD + R+ LS + + Q+G
Sbjct: 212 GLVHISQLSHSHVEKPSDVVEE--GQEVKVKVLSVDRDNERISLSIKDTLPGPWNQIGEK 269
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ GTVQ L +GAF++I G+ GL+H+SQIS+ + VL+ G T+KV
Sbjct: 270 VKPGDVLEGTVQRLVSFGAFVEILPGVEGLVHISQISNKHIGTPHEVLEEGQTVKV 325
>sp|P46836|RS1_MYCLE 30S ribosomal protein S1 OS=Mycobacterium leprae (strain TN)
GN=rpsA PE=3 SV=2
Length = 481
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 139/247 (56%), Gaps = 20/247 (8%)
Query: 84 EEFHSALEK---YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACI-HKIKH 139
E+F +A++K Y FN G V+GT+ D L+DI K+ +P +E I H +
Sbjct: 20 EDFLAAIDKTIKY-FND--GDIVEGTIVKVDRDEVLLDIGYKTEGVIPARELSIKHDVDP 76
Query: 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
E + G + E +++ + + + L+LS + QYE AW L+ +D VKG V+
Sbjct: 77 NEVVSV--GDEVEALVLTKEDKEGRLILSKKRAQYERAWGTIEALKEKDEAVKGIVIEVV 134
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
KGG++ ++ GLRGF+P S + + + +GK++ K +E+D+ ++ +VLS R +
Sbjct: 135 KGGLILDI-GLRGFLPASLVEMRRVRDLQPYIGKEIEAKIIELDKNRNNVVLSRRAWLEQ 193
Query: 258 SQA--------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
+Q+ QL G++ G V S+ +GAF+D+GG++GL+HVS++S + + V+Q
Sbjct: 194 TQSEVRSEFLNQLQKGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSELSWKHIDHPSEVVQ 253
Query: 310 PGDTLKV 316
G+ + V
Sbjct: 254 VGNEVTV 260
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 19/227 (8%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD 162
VKG V G ++DI + +LP A + +++ V + G + E II ++
Sbjct: 126 VKGIVIEVVKGGLILDIGLR--GFLP---ASLVEMRRVRDLQPYIGKEIEAKIIELDKNR 180
Query: 163 DSLVLS----LRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
+++VLS L Q E+ E QLQ + + KG V G ++ G+ G V S+
Sbjct: 181 NNVVLSRRAWLEQTQSEVRSEFLNQLQ-KGAIRKGVVSSIVNFGAFVDLGGVDGLVHVSE 239
Query: 219 ISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGSVVIG 270
+S K +G ++ ++ ++VD ++ R+ LS + D IG +V G
Sbjct: 240 LSWKHIDHPSEVVQVGNEVTVEVLDVDMDRERVSLSLKATQEDPWRHFARTHAIGQIVPG 299
Query: 271 TVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
V L P+GAF+ + GI GL+H+S+++ V V+ GD V
Sbjct: 300 KVTKLVPFGAFVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMV 346
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 85 EFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAG 144
EF + L+K G KG V N GA VD+ + E I H E
Sbjct: 201 EFLNQLQK-------GAIRKGVVSSIVNFGAFVDLGG-VDGLVHVSELSWKHIDHPSE-- 250
Query: 145 IVPGLKEEFVIIGENEADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV 203
+V E V + + + D V LSL+ Q E W + + +V GKV G
Sbjct: 251 VVQVGNEVTVEVLDVDMDRERVSLSLKATQ-EDPWRHFARTHAIGQIVPGKVTKLVPFGA 309
Query: 204 VAEVE-GLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
VE G+ G V S+++ + +G D +K +++D E+ R+ LS ++A D
Sbjct: 310 FVRVEEGIEGLVHISELAERHVEVPDQVVAVGDDAMVKVIDIDLERRRISLSLKQANED 368
>sp|O06000|RS1H_BACC1 30S ribosomal protein S1 homolog OS=Bacillus cereus (strain ATCC
10987) GN=BCE_1625 PE=3 SV=1
Length = 382
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 129/235 (54%), Gaps = 26/235 (11%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE--EFVI 155
++G V G+V + + LV++ K+ +P E H+E+A V L + E I
Sbjct: 16 QVGDVVTGSVTKVEEKQVLVNVGYKTDGVIPISELAN---VHIEKASDVVELDQILELKI 72
Query: 156 IGENEADDSLVLSLRMIQYELAW----ERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211
I E D LVLS R + E AW E+ DV VK V GG+V ++ G+R
Sbjct: 73 IKLEEND--LVLSKRAVDAEKAWIELQEKFTSGHVFDVTVKDIV----NGGLVVDL-GVR 125
Query: 212 GFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMA---DSQAQLGI-- 264
GF+P S + + + GK L +K VE+D E++R++LS++ + DS+ + I
Sbjct: 126 GFIPASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKAVVELELDSKKKEAISS 185
Query: 265 ---GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G VV GTVQ L +GAF+++GG++GL+H+SQISH+RV + VL+ G +KV
Sbjct: 186 LKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPSEVLEQGQKVKV 240
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 61/217 (28%), Positives = 110/217 (50%), Gaps = 17/217 (7%)
Query: 112 NRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR- 170
N G +VD+ + ++P A + ++ +VE+ G I+ + + ++LS +
Sbjct: 115 NGGLVVDLGVR--GFIP---ASLVEVHYVEDFTDYKGKTLAVKIVELDREKNRVILSHKA 169
Query: 171 MIQYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE-- 226
+++ EL ++ + S E VV+G V G V G+ G V SQIS + +
Sbjct: 170 VVELELDSKKKEAISSLKEGDVVEGTVQRLTDFGAFVNVGGVDGLVHISQISHERVEQPS 229
Query: 227 ELL--GKDLPLKFVEVDEEQSRLVLSNRKA----MADSQAQLGIGSVVIGTVQSLKPYGA 280
E+L G+ + +K + VD + R+ LS + A + ++ G + G V+ L +GA
Sbjct: 230 EVLEQGQKVKVKVLSVDADTQRISLSIKAAQPGPWENIAGEVKAGDIREGIVKRLVTFGA 289
Query: 281 FIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
F++I G+ GL+HVSQI++ V + VL+ G +KV
Sbjct: 290 FVEILPGVEGLVHVSQIANRHVKNPNEVLEMGQEVKV 326
>sp|Q8CWR9|RS1_STRR6 30S Ribosomal protein S1 OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=rpsA PE=1 SV=1
Length = 400
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 102/174 (58%), Gaps = 12/174 (6%)
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
++G++ + ++S + ++ AW++ + E V VKG A KGG+ E EG+RGF+
Sbjct: 76 VVGKDTDTVTYLVSKKRLEARKAWDKLVGREEEVVTVKG--TRAVKGGLSVEFEGVRGFI 133
Query: 215 PFSQISSK--STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ--------AQLGI 264
P S + ++ AE +G++ K EV+ +++R +LS R+ + + +L +
Sbjct: 134 PASMLDTRFVRNAERFVGQEFDTKIKEVNAKENRFILSRREVVEAATAAARAEVFGKLAV 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G VV G V + +GAFID+GG++GL+H++++SH+R +V+ G+ ++V +
Sbjct: 194 GDVVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKI 247
Score = 65.5 bits (158), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 77/136 (56%), Gaps = 9/136 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEE----LLGKDLPLKFVEVDEEQS 245
VV GKV G ++ G+ G V +++S + +G+++ +K ++++EE+
Sbjct: 196 VVTGKVARITSFGAFIDLGGVDGLVHLTELSHERNVSPKSVVTVGEEIEVKILDLNEEEG 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDR 300
R+ LS + + + +L G VV GTV+ L +GAF+++ GI+GL+HVSQISH R
Sbjct: 256 RVSLSLKATVPGPWDGVEQKLAKGDVVEGTVKRLTDFGAFVEVLPGIDGLVHVSQISHKR 315
Query: 301 VADIATVLQPGDTLKV 316
+ + L+ G ++V
Sbjct: 316 IENPKEALKVGQEVQV 331
>sp|Q4L6I1|RS1_STAHJ 30S ribosomal protein S1 OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=rpsA PE=3 SV=1
Length = 392
Score = 94.7 bits (234), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 123/232 (53%), Gaps = 17/232 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-IG 157
G KV G V +++ +V I K + +P + H I++ E E +V I
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKQGDEIEAYVTKIE 75
Query: 158 ENEADDS--LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+E +DS +LS R ++ E ++E ++ D +++ KV KGG+V +V G RGFVP
Sbjct: 76 VDEENDSGVYILSKRQLETEKSYEYLQEKLDNDEIIEAKVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGI 264
S IS+ + + G+ + +K E+D E +R++LS RKA+ ++ L
Sbjct: 135 ASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQAENDVKKASLLESLNA 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G + V
Sbjct: 194 GDVIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDV 245
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQS 245
V+KGKV G ++ G+ G V S++S + + E+++ G+++ +K V+++
Sbjct: 196 VIKGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAE 255
Query: 246 RLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR 300
R+ LS + + + Q V+ G V L +GAF++I G+ GL+H+S+I+H+
Sbjct: 256 RISLSIKDTLPTPFESIKGQFHEDDVIEGKVVRLANFGAFVEIAPGVQGLVHISEIAHEH 315
Query: 301 VADIATVLQPGDTLKVCL 318
+ L+PG + V +
Sbjct: 316 IGTPGEKLEPGQQVNVKI 333
>sp|Q5HP69|RS1_STAEQ 30S ribosomal protein S1 OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=rpsA PE=3 SV=1
Length = 392
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 118/217 (54%), Gaps = 17/217 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI-IG 157
G KV G V +++ +V I K + +P + H I++ E V E +V I
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIENPSEVVKVGDEVEAYVTKIE 75
Query: 158 ENEADDS--LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+E +D+ +LS R ++ E ++E ++ D V++ +V KGG+V +V G RGFVP
Sbjct: 76 FDEENDTGAYILSKRQLETEKSYEYLQEKLDNDEVIEAEVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAM---------ADSQAQLGI 264
S IS+ + + G+ + +K E+D E +R++LS RKA+ A L
Sbjct: 135 ASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQLENDAKKASILDSLNE 193
Query: 265 GSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV 301
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V
Sbjct: 194 GDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSHEHV 230
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 85/166 (51%), Gaps = 12/166 (7%)
Query: 165 LVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++LS + + Q E ++ L S E V+ GKV G ++ G+ G V S++S
Sbjct: 168 VILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAFIDIGGVDGLVHVSELSH 227
Query: 222 K--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIGTVQ 273
+ T EE++ G+ + +K V+++ R+ LS + + + + + V+ GTV
Sbjct: 228 EHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVIEGTVV 287
Query: 274 SLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
L +GAF++I + GL+H+S+I H + VL+PG + V +
Sbjct: 288 RLANFGAFVEIAPSVQGLVHISEIDHKHIGSPNEVLEPGQQVNVKI 333
>sp|Q49XT0|RS1_STAS1 30S ribosomal protein S1 OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=rpsA
PE=3 SV=1
Length = 393
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 15/233 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGE 158
G KV G V + + +V + AK + +P + H I + +A V +V E
Sbjct: 16 GDKVTGEVQEIEEKQVIVAVNGAKFNGIIPISQLSTHHIDNPSDAVKVGDEIGAYVTKVE 75
Query: 159 NEADD---SLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVP 215
+ ++ + +LS R ++ E ++E ++ + ++ KV KGG+V +V G RGFVP
Sbjct: 76 YDEENETGAYILSKRQLETEKSYEFLQEQLDNNQTIEAKVTEVVKGGLVVDV-GQRGFVP 134
Query: 216 FSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIG 265
S IS+ + + G+ L LK E+D +R++LS + A A+ L G
Sbjct: 135 ASLISTDFIEDFSDFEGQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEG 194
Query: 266 SVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V+ G V L +GAF+DIGG++GL+HVS++SH+ V V+ G+T+ V +
Sbjct: 195 DVIEGKVARLTNFGAFVDIGGVDGLVHVSELSHEHVKSPEDVVSIGETVNVKI 247
Score = 65.1 bits (157), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 92/168 (54%), Gaps = 12/168 (7%)
Query: 161 ADDSLVLSLRMIQ-YELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFS 217
A++ ++LS + ++ E A ++ L+S E V++GKV G ++ G+ G V S
Sbjct: 164 ANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAFVDIGGVDGLVHVS 223
Query: 218 QISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVI 269
++S + + E++ +G+ + +K VD++ R+ LS + + + + G V+
Sbjct: 224 ELSHEHVKSPEDVVSIGETVNVKIKSVDKDSERISLSIKDTLPSPFESIKGEFNEGDVIE 283
Query: 270 GTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
GTV L +GAF++I G+ GL+H+S+ISH + + L+PG + V
Sbjct: 284 GTVVRLANFGAFVEIKPGVQGLVHISEISHSHIGSPSEALEPGQVVSV 331
>sp|Q6GGT5|RS1_STAAR 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MRSA252)
GN=rpsA PE=3 SV=1
Length = 391
Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 90/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q + G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q8NWM8|RS1_STAAW 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MW2)
GN=rpsA PE=3 SV=1
Length = 391
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q6G987|RS1_STAAS 30S ribosomal protein S1 OS=Staphylococcus aureus (strain MSSA476)
GN=rpsA PE=3 SV=1
Length = 391
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q5HFU7|RS1_STAAC 30S ribosomal protein S1 OS=Staphylococcus aureus (strain COL)
GN=rpsA PE=3 SV=1
Length = 391
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIDGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIDGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q89AJ3|RS1_BUCBP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rpsA PE=3 SV=2
Length = 566
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 129/273 (47%), Gaps = 42/273 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GTV LV
Sbjct: 3 ESFAQLFEESLKNIKTRP------------------------GSIIQGTVVAITKDTILV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P I + K+ + E + G + + + + +LS +
Sbjct: 39 DAKLKSESKIP-----IDQFKNSQGELEVKVGDQIDVALDAIEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW Q + V G + G KGG E+E +R F+P S + + E L GK+L
Sbjct: 94 AWLTLEQAYKDSKTVVGLINGKVKGGFTVELEDIRAFLPGSLVDIRPVRETMHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQAQ---------LGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G +V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESEYNAERNLLLETLQEGLIVSGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G++GLLH++ ++ RV + ++ GD +K+ +
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNIGDEVKIKI 245
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 96/219 (43%), Gaps = 30/219 (13%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V G V + GA VD+ L + ++KH E + G + + I+ +
Sbjct: 192 GLIVSGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNIGDEVKIKILKFD 249
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ L L+ + + W + + E + G+V G E+E G+ G V S+
Sbjct: 250 REKIRVSLGLKQLSDD-PWTKISERYPEKTKITGRVTNLTDYGCFVEIEEGVEGLVHVSE 308
Query: 219 ISSKSTAEELLGKDL-PLKFVEV-----------DEEQSRLVL-----SNRKAMADSQAQ 261
+ + K++ P K V+V DEE+ R+ L N M S+ +
Sbjct: 309 M-------DWTNKNIHPSKMVQVNSVVKVMILDIDEERRRISLGLKQCKNNPWMEFSK-K 360
Query: 262 LGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
GS V+G ++S+ +G FI + G I+GL+H+S IS +
Sbjct: 361 YNKGSHVVGKIKSITDFGIFIGLEGSIDGLVHLSDISWN 399
>sp|Q7A5J0|RS1_STAAN 30S ribosomal protein S1 OS=Staphylococcus aureus (strain N315)
GN=rpsA PE=1 SV=1
Length = 391
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q99U14|RS1_STAAM 30S ribosomal protein S1 OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=rpsA PE=1 SV=1
Length = 391
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 19/235 (8%)
Query: 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKH----VEEAGIVPGLKEEFV 154
G KV G V +++ +V I K + +P + H I V+E V +
Sbjct: 16 GDKVTGEVQQVEDKQVVVHINGGKFNGIIPISQLSTHHIDSPSEVVKEGDEVEAYVTKVE 75
Query: 155 IIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFV 214
ENE + +LS R ++ E ++ ++ + +++ KV KGG+V +V G RGFV
Sbjct: 76 FDEENETG-AYILSRRQLETEKSYSYLQEKLDNNEIIEAKVTEVVKGGLVVDV-GQRGFV 133
Query: 215 PFSQISSKSTAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ---------LG 263
P S IS+ + + G+ + +K E+D E +R++LS RKA+ + L
Sbjct: 134 PASLISTDFIEDFSVFDGQTIRIKVEELDPENNRVILS-RKAVEQEENDAKKDQLLQSLN 192
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+ G V L +GAFIDIGG++GL+HVS++SH+ V V+ G +KV +
Sbjct: 193 EGDVIHGKVARLTQFGAFIDIGGVDGLVHVSELSHEHVQTPEEVVSIGQDVKVKI 247
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 91/169 (53%), Gaps = 12/169 (7%)
Query: 162 DDSLVLSLRMI-QYELAWERCRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218
++ ++LS + + Q E ++ + LQS E V+ GKV + G ++ G+ G V S+
Sbjct: 165 NNRVILSRKAVEQEENDAKKDQLLQSLNEGDVIHGKVARLTQFGAFIDIGGVDGLVHVSE 224
Query: 219 ISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVIG 270
+S + T EE+ +G+D+ +K +D + R+ LS + + + + Q V+ G
Sbjct: 225 LSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVIEG 284
Query: 271 TVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V L +GAF++I G+ GL+H+S+I+H + VL+PG + V +
Sbjct: 285 VVVRLANFGAFVEIAPGVQGLVHISEIAHKHIGTPGEVLEPGQQVNVKI 333
>sp|Q48082|RS1_HAEIN 30S ribosomal protein S1 OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=rpsA PE=3 SV=1
Length = 549
Score = 90.5 bits (223), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 115/227 (50%), Gaps = 14/227 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G+ V GTV LVD KS + +P E + + + G + + V G
Sbjct: 21 GSIVSGTVVAIQKGFVLVDAGLKSESAIPVAEFLNAQGELEIQVGDTVNVALDAVEDGFG 80
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
E S + +++E +W + E V G + G KGG E+ G+R F+P S +
Sbjct: 81 ETKLS---REKAVRHE-SWIELEKAYEEKATVIGLIXGKVKGGFTVELNGVRAFLPGSLV 136
Query: 220 SSKST--AEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVI 269
++ A+ LLGK+L K +++D++++ +V+S R + +Q L GS V
Sbjct: 137 DTRPAREADHLLGKELEFKVIKLDQKRNNVVVSRRAVIESENSQEREQVLENLVEGSEVK 196
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G V++L YGAF+D+GG++GLLH++ ++ RV + ++ GD + V
Sbjct: 197 GVVKNLTEYGAFVDLGGVDGLLHITDMAWKRVKHPSEIVNVGDEVTV 243
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 22/213 (10%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G++VKG V GA VD+ L + ++KH E IV E V + +
Sbjct: 192 GSEVKGVVKNLTEYGAFVDLGG-VDGLLHITDMAWKRVKHPSE--IVNVGDEVTVKVLKF 248
Query: 160 EADDSLV-LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFS 217
+ D + V L L+ + + W + + + GKV G E+ +G+ G V S
Sbjct: 249 DKDRTRVSLGLKQLGQD-PWAAIAENHPVNSKLTGKVTNLTDYGCFVEILDGVEGLVHVS 307
Query: 218 QIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IG 265
++ SK + LG + + +E+DEE+ R+ L ++ A+ Q G
Sbjct: 308 EMDWTNKNIHPSKVVS---LGDTVEVMVLEIDEERRRISLGLKQCKANPWTQFADTHNKG 364
Query: 266 SVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V G ++S+ +G FI + GGI+GL+H+S IS
Sbjct: 365 DKVTGKIKSITDFGIFIGLEGGIDGLVHLSDIS 397
>sp|P37985|RS1_DICD3 30S ribosomal protein S1 OS=Dickeya dadantii (strain 3937) GN=rpsA
PE=3 SV=2
Length = 557
Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 73/271 (26%), Positives = 125/271 (46%), Gaps = 42/271 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P + + K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIP-----VEQFKNAQGEIEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + E V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWLMLEKAYEESATVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GLLH++ ++ RV + ++ GD + V
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS-QAQLGI---GSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D L + G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNYLSVNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G L S+ S DR+ D V+ GD ++
Sbjct: 474 VEGYLRASEASRDRIEDATLVMSVGDEIE 502
>sp|Q97I09|ISPH_CLOAB 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=ispH PE=3 SV=1
Length = 642
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 120/242 (49%), Gaps = 38/242 (15%)
Query: 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFV---- 154
+G V G + + ++I K +P E +++ G LKE F
Sbjct: 308 VGASVTGEIIQVSEKEVFLNINYKRDGVIPKSE--------IDDDG--KDLKELFTVGDK 357
Query: 155 ----IIGENEADDSLVLSLRMIQYELAWERCRQL----QSEDVVVKGKVVGANKGGVVAE 206
II +AD+ +VLS++ +Q E ++ ++ + +VVVK V KGG++A
Sbjct: 358 IVAKIIKLKDADNYVVLSVKELQREQGYKEIKEAFENKTTLNVVVKEDV----KGGIIAS 413
Query: 207 VEGLRGFVPFSQIS--SKSTAEELLGKDLPLKFVE--VDEEQSRLVLSNRKAMADSQAQ- 261
+G+R F+P S + +E +GK + +E + Q+++V S R ++ + +
Sbjct: 414 YKGIRIFIPASHVELFHVDNLKEYIGKSFDVAIIEYSTKKRQTKIVASRRALLSKEKEKV 473
Query: 262 -------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTL 314
L G VV G V+ L +GAF++I G++GLLHVS+IS RV A VL+ GD +
Sbjct: 474 EETVWNKLEEGQVVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIGDKI 533
Query: 315 KV 316
KV
Sbjct: 534 KV 535
Score = 68.2 bits (165), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 13/150 (8%)
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS---KSTAEEL-LG 230
E W + + Q VV+G+V G E+EG+ G + S+IS + A+ L +G
Sbjct: 475 ETVWNKLEEGQ----VVEGEVKRLTDFGAFVEIEGVDGLLHVSEISWGRVEKPADVLKIG 530
Query: 231 KDLPLKFVEVDEEQSRLVLSNRK----AMADSQAQLGIGSVVIGTVQSLKPYGAFIDI-G 285
+ + + VD+E +L LS +K + + + +GSVV+G V +GAF+ +
Sbjct: 531 DKIKVYVLSVDKENKKLSLSVKKLTENPWNNVEEKYPVGSVVLGKVIRFADFGAFVKLEP 590
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLK 315
G++GL+H+S+ISH R+A + L G+ +K
Sbjct: 591 GVDGLVHISEISHKRIAKPSDALNVGEEIK 620
>sp|P0AG70|RS1_SHIFL 30S ribosomal protein S1 OS=Shigella flexneri GN=rpsA PE=3 SV=1
Length = 557
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 42/271 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GLLH++ ++ RV + ++ GD + V
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G L S+ S DRV D VL GD ++
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVE 502
>sp|P0AG67|RS1_ECOLI 30S ribosomal protein S1 OS=Escherichia coli (strain K12) GN=rpsA
PE=1 SV=1
Length = 557
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 42/271 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GLLH++ ++ RV + ++ GD + V
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G L S+ S DRV D VL GD ++
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVE 502
>sp|P0AG68|RS1_ECOL6 30S ribosomal protein S1 OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=rpsA PE=3 SV=1
Length = 557
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 42/271 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GLLH++ ++ RV + ++ GD + V
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G L S+ S DRV D VL GD ++
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVE 502
>sp|P0AG69|RS1_ECO57 30S ribosomal protein S1 OS=Escherichia coli O157:H7 GN=rpsA PE=3
SV=1
Length = 557
Score = 85.9 bits (211), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 42/271 (15%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + T P G+ V+G V D LV
Sbjct: 3 ESFAQLFEESLKEIETRP------------------------GSIVRGVVVAIDKDVVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVE-EAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176
D KS + +P ++ K+ + E I G + + + + +LS +
Sbjct: 39 DAGLKSESAIPAEQ-----FKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHE 93
Query: 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLP 234
AW + + V G + G KGG E+ G+R F+P S + + + L GK+L
Sbjct: 94 AWITLEKAYEDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELE 153
Query: 235 LKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFIDIG 285
K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D+G
Sbjct: 154 FKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG 212
Query: 286 GINGLLHVSQISHDRVADIATVLQPGDTLKV 316
G++GLLH++ ++ RV + ++ GD + V
Sbjct: 213 GVDGLLHITDMAWKRVKHPSEIVNVGDEITV 243
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W++ + ++ V+GK+ G+ ++G + G V S IS EE + G
Sbjct: 354 WQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYKKGD 413
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDIG-G 286
++ ++VD E+ R+ L ++ D A G++V G V ++ GA +++ G
Sbjct: 414 EIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKKGAIVTGKVTAVDAKGATVELADG 473
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLK 315
+ G L S+ S DRV D VL GD ++
Sbjct: 474 VEGYLRASEASRDRVEDATLVLSVGDEVE 502
>sp|Q9Z8M3|RS1_CHLPN 30S ribosomal protein S1 OS=Chlamydia pneumoniae GN=rpsA PE=3 SV=1
Length = 580
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 124/256 (48%), Gaps = 17/256 (6%)
Query: 73 TAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132
A + + +T S+ E+ D + G +KGTV + +VD+ KS +P E
Sbjct: 25 VAEFKDLLYTAHRITSSEEESDNEIQPGAILKGTVVDINKDFVVVDVGLKSEGVIPMSEF 84
Query: 133 CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVK 192
G+V G + E + + + +VLS + WE E +VK
Sbjct: 85 IDSS------EGLVLGAEVEVYLDQAEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVK 138
Query: 193 GKVVGANKGGVVAEVEGLRGFVPFSQISSKS--TAEELLGKDLPLKFVEVDEEQSRLVLS 250
G++ KGG++ ++ G+ F+P SQI +K ++ +GK K ++++ E+ +V+S
Sbjct: 139 GQITRKVKGGLIVDI-GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVERRNIVVS 197
Query: 251 NRKAM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA 302
R+ + A+ Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+
Sbjct: 198 RRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLLHITDMTWKRIR 257
Query: 303 DIATVLQPGDTLKVCL 318
+ +++ L+V +
Sbjct: 258 HPSEMVELNQELEVII 273
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 118/234 (50%), Gaps = 18/234 (7%)
Query: 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157
E G+ VKG + G +VDI + A+LP + KIK++++ G EF I+
Sbjct: 132 EEGSIVKGQITRKVKGGLIVDIGME--AFLPGSQIDNKKIKNLDD---YVGKVCEFKILK 186
Query: 158 ENEADDSLVLSLR-MIQYELAWERCRQLQSEDV--VVKGKVVGANKGGVVAEVEGLRGFV 214
N ++V+S R +++ E ++ ++ + KG V GV +++G+ G +
Sbjct: 187 INVERRNIVVSRRELLEAERISKKAELIEQISIGEYRKGVVKNITDFGVFLDLDGIDGLL 246
Query: 215 PFSQISSKST--AEEL--LGKDLPLKFVEVDEEQSRLVLSNRK----AMADSQAQLGIGS 266
+ ++ K E+ L ++L + + VD+E+ R+ L ++ D + + G
Sbjct: 247 HITDMTWKRIRHPSEMVELNQELEVIILSVDKEKGRVALGLKQKEHNPWEDIEKKYPPGK 306
Query: 267 VVIGTVQSLKPYGAFIDI-GGINGLLHVSQISH-DRVADIATVLQPGDTLKVCL 318
V+G + L PYGAFI+I GI GL+H+S++S + D + V+ GD ++ +
Sbjct: 307 RVLGKIVKLLPYGAFIEIEEGIEGLIHISEMSWVKNIVDPSEVVNKGDEVEAIV 360
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/249 (20%), Positives = 108/249 (43%), Gaps = 32/249 (12%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V G + GA ++I E I + H+ E V
Sbjct: 292 HNPWEDIEKKYPPGKRVLGKIVKLLPYGAFIEI-----------EEGIEGLIHISEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + +++VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPSEVVNKGDEVEAIVLSIQKDEGKISLGLKQTERNPWDNIEEKYPIGLHVNAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNSVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ ++ +A G+V+ G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAFVELQNGIEGLIHVSELSDKPFAKIE 520
Query: 306 TVLQPGDTL 314
++ G+ +
Sbjct: 521 DIISIGENV 529
>sp|Q6NDP1|RS1_RHOPA 30S ribosomal protein S1 OS=Rhodopseudomonas palustris (strain ATCC
BAA-98 / CGA009) GN=rpsA PE=1 SV=1
Length = 565
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 103 VKGTVFCTDNRGALVDITAKSSAYLPTQE-ACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161
+KG V + A++D+ K+ +P +E A + ++ V E F+ EN
Sbjct: 33 IKGKVVAIEKDMAVIDVGLKTEGRVPLREFAGPGRDNEIKVGDTV----EVFLDRIENAL 88
Query: 162 DDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISS 221
++ VLS + E +W + + + V G + KGG +++G F+P SQ+
Sbjct: 89 GEA-VLSRDKARREESWGKLEKAFQNNEKVFGVIFNQVKGGFTVDLDGAVAFLPRSQVDI 147
Query: 222 KSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGT 271
+ + L+ P + +++D + +V+S R + +++A+ L G V+ G
Sbjct: 148 RPIRDVAPLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGV 207
Query: 272 VQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V+++ YGAF+D+GGI+GLLHV+ I+ RV VL G T+KV +
Sbjct: 208 VKNITDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKI 254
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 109/228 (47%), Gaps = 23/228 (10%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
EE LEK N+E KV G +F G VD+ + A+LP + I I+ V
Sbjct: 101 EESWGKLEKAFQNNE---KVFGVIFNQVKGGFTVDLDG-AVAFLPRSQVDIRPIRDV--- 153
Query: 144 GIVPGLK--EEFVIIGENEADDSLVLSLRMIQYELAWERCRQL---QSEDVVVKGKVVGA 198
P + + F I+ + ++V+S R + E E+ ++L E V+ G V
Sbjct: 154 --APLMNNSQPFQILKMDRRRGNIVVSRRTVLEETRAEQRQELVQNLEEGQVIDGVVKNI 211
Query: 199 NKGGVVAEVEGLRGFVPFSQISSK----STAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254
G ++ G+ G + + I+ + T +G+ + +K ++++ E R+ L ++
Sbjct: 212 TDYGAFVDLGGIDGLLHVTDIAWRRVNHPTEVLTIGQTVKVKIIKINHETHRISLGMKQL 271
Query: 255 MADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ D +A+ + + G V ++ YGAF+++ GI GL+HVS++S
Sbjct: 272 LDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLIHVSEMS 319
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 24/218 (11%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N E G + G V + GA VD+ L + ++ H E + G + I
Sbjct: 197 NLEEGQVIDGVVKNITDYGAFVDLGG-IDGLLHVTDIAWRRVNHPTEV-LTIGQTVKVKI 254
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFV 214
I N + L ++ + + W+ + G+V G E+E G+ G +
Sbjct: 255 IKINHETHRISLGMKQL-LDDPWQGIEAKYPLNARFTGRVTNITDYGAFVELEPGIEGLI 313
Query: 215 PFSQISSK----------STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA---- 260
S++S ST++E+ ++ +EVD + R+ L ++ M +
Sbjct: 314 HVSEMSWTKKNMHPGKIVSTSQEV-----EVQVLEVDSVKRRISLGLKQTMRNPWEVFVE 368
Query: 261 QLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+ +GS V G V++ +G F+ + G ++G++H+S +
Sbjct: 369 KHPVGSTVEGEVKNKTEFGLFLGLDGDVDGMVHLSDLD 406
>sp|P14129|RS1_RHIME 30S ribosomal protein S1 OS=Rhizobium meliloti (strain 1021)
GN=rpsA PE=3 SV=2
Length = 568
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/255 (26%), Positives = 123/255 (48%), Gaps = 16/255 (6%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSEL--GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEAC 133
M + T ++F + LE+ ++L G KG V + A+VD+ K +P +E
Sbjct: 1 MSATNPTRDDFAALLEESFAKTDLAEGYVAKGIVTAIEKDVAIVDVGLKVEGRVPLKEFG 60
Query: 134 IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKG 193
++ + G + E + A VLS + E +W+R V+G
Sbjct: 61 ----AKAKDGTLKVGDEVEVYVERIENALGEAVLSREKARREESWQRLEVKFEAGERVEG 116
Query: 194 KVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSN 251
+ KGG +++G F+P SQ+ + + L+ P + +++D+ + +V+S
Sbjct: 117 IIFNQVKGGFTVDLDGAVAFLPRSQVDIRPIRDVTPLMHNPQPFEILKMDKRRGNIVVSR 176
Query: 252 RKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVAD 303
R + +S+A+ L G VV G V+++ YGAF+D+GGI+GLLHV+ ++ RV
Sbjct: 177 RTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFVDLGGIDGLLHVTDMAWRRVNH 236
Query: 304 IATVLQPGDTLKVCL 318
+ +L G +KV +
Sbjct: 237 PSEILNIGQQVKVQI 251
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/221 (24%), Positives = 113/221 (51%), Gaps = 16/221 (7%)
Query: 89 ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPG 148
+ ++ + E G +V+G +F G VD+ + A+LP + I I+ V P
Sbjct: 100 SWQRLEVKFEAGERVEGIIFNQVKGGFTVDLDG-AVAFLPRSQVDIRPIRDVTPLMHNP- 157
Query: 149 LKEEFVIIGENEADDSLVLSLRMIQYE-LAWERCRQLQS--EDVVVKGKVVGANKGGVVA 205
+ F I+ ++ ++V+S R + E A +R +Q+ E VV+G V G
Sbjct: 158 --QPFEILKMDKRRGNIVVSRRTVLEESRAEQRSEIVQNLEEGQVVEGVVKNITDYGAFV 215
Query: 206 EVEGLRGFVPFSQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261
++ G+ G + + ++ + + E+L G+ + ++ + +++E R+ L ++ +D
Sbjct: 216 DLGGIDGLLHVTDMAWRRVNHPSEILNIGQQVKVQIIRINQETHRISLGMKQLESDPWDG 275
Query: 262 LG----IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
+G +G + GTV ++ YGAF+++ GI GL+H+S++S
Sbjct: 276 IGAKYPVGKKISGTVTNITDYGAFVELEPGIEGLIHISEMS 316
>sp|Q9HZ71|RS1_PSEAE 30S ribosomal protein S1 OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=rpsA PE=3
SV=1
Length = 559
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 83/139 (59%), Gaps = 10/139 (7%)
Query: 188 DVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQS 245
D VVKG + G KGG +V G+R F+P S + + + L GK+L K +++D++++
Sbjct: 105 DEVVKGVINGKVKGGFTVDVNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRN 164
Query: 246 RLVLSNRKAM-ADSQAQ-------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297
+V+S R + A++ A+ L G V G V++L YGAF+D+GG++GLLH++ ++
Sbjct: 165 NVVVSRRSVLEAENSAEREALLESLQEGQQVKGIVKNLTDYGAFVDLGGVDGLLHITDMA 224
Query: 298 HDRVADIATVLQPGDTLKV 316
R+ + ++ GD + V
Sbjct: 225 WKRIKHPSEIVNVGDEIDV 243
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 110/231 (47%), Gaps = 15/231 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +VKG V + GA VD+ L + +IKH E + G + + ++ +
Sbjct: 192 GQQVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRIKHPSEI-VNVGDEIDVKVLKFD 249
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ + L L+ + E W + E V +V G AE+E G+ G V S+
Sbjct: 250 RERNRVSLGLKQLG-EDPWVAIKARYPEGTRVMARVTNLTDYGCFAELEEGVEGLVHVSE 308
Query: 219 ISSKS-----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMA----DSQAQLGIGSVVI 269
+ + + +G ++ ++ +++DEE+ R+ L ++ + D +Q G +
Sbjct: 309 MDWTNKNIHPSKVVQVGDEVEVQVLDIDEERRRISLGIKQCKSNPWEDFSSQFNKGDRIS 368
Query: 270 GTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIAT-VLQPGDTLKVCL 318
GT++S+ +G FI + GGI+GL+H+S IS + V + A + GD L+ +
Sbjct: 369 GTIKSITDFGIFIGLDGGIDGLVHLSDISWNEVGEEAVRRFKKGDELETVI 419
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 209 GLRGFVPFSQISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG 263
G+ G V S IS EE + G +L + VD E+ R+ L ++ D +
Sbjct: 386 GIDGLVHLSDISWNEVGEEAVRRFKKGDELETVILSVDPERERISLGIKQLEDDPFSNYA 445
Query: 264 I----GSVVIGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLK 315
GS+V GTV+ + GA I +G I G+L S+IS DRV D VL+ G+ ++
Sbjct: 446 SLHEKGSIVRGTVKEVDAKGAVISLGDDIEGILKASEISRDRVEDARNVLKEGEEVE 502
>sp|Q4ULF1|RS1_RICFE 30S ribosomal protein S1 OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=rpsA PE=3 SV=1
Length = 568
Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 121/246 (49%), Gaps = 20/246 (8%)
Query: 84 EEFHSALEKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+F LE D + + T VKG V N +VD+ K+ +P E + E
Sbjct: 22 EDFSKMLETVDTSHIKEKTVVKGQVIEIKNDMVIVDVGLKNEGRIPKSEFL-----ALPE 76
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
G V E F+ E +++ + ++ EL W + + S+ V G + G KGG
Sbjct: 77 VGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGG 132
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G+ F+P SQ+ + + ++ P K + +D++ +V+S R + +S++
Sbjct: 133 FTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLDNIVVSRRAILEESRS 192
Query: 261 Q--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL+
Sbjct: 193 EARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQ 252
Query: 313 TLKVCL 318
+KV +
Sbjct: 253 KVKVMV 258
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V GT+F G VD++ A+LP + + IK + + +K+ F I+ +
Sbjct: 118 GEFVDGTIFGRVKGGFTVDLSG-VVAFLPGSQVDVRPIK---DPTSIMNIKQPFKILSMD 173
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ D++V+S R I E E ++ S E +V++G V G ++ + G +
Sbjct: 174 KKLDNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHL 233
Query: 217 SQISS---KSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVV 268
+ IS +E L + + + ++ DE+ R+ L ++ ++ + + +G +
Sbjct: 234 TDISWGRVNHPSEVLEFNQKVKVMVIKFDEKTKRISLGIKQLDSNPWEAIKEEFPVGKKM 293
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V + YG FI++ G+ GL+H S+IS
Sbjct: 294 TGKVTNFADYGVFIELRDGLEGLVHSSEIS 323
>sp|Q44653|RS1_BUCAP 30S ribosomal protein S1 OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=rpsA PE=3 SV=1
Length = 559
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 129/275 (46%), Gaps = 46/275 (16%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GT+ + LV
Sbjct: 3 ESFAQLFEESLKEIKTRP------------------------GSIIRGTIVSIEKDIVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL---VLSLRMIQY 174
D KS + +P ++ K+ + G++ + + + + +D +LS +
Sbjct: 39 DAGLKSESAIPVEQ-----FKNAQ--GLLDVKVGDQIDVALDAIEDGFGETLLSREKAKR 91
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
AW Q + V G + G KGG E+ +R F+P S + + + L GK+
Sbjct: 92 HEAWLILEQAHEKSETVIGIINGKVKGGFTVELNEIRAFLPGSLVDVRPVRDTIHLEGKE 151
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFID 283
L K +++D++++ +V+S R+A+ +S+ L G + G V++L YGAF+D
Sbjct: 152 LEFKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLESLQEGIEIKGIVKNLTDYGAFVD 210
Query: 284 IGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+GG++GLLH++ ++ RV + ++ GD + V +
Sbjct: 211 LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINVKI 245
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 20/212 (9%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G ++KG V + GA VD+ L + ++KH E + G + I+ +
Sbjct: 192 GIEIKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNVGDEINVKILKFD 249
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQ 218
+ + L L+ + E W E + + G+V G E+E G+ G V S+
Sbjct: 250 KERTRVSLGLKQLG-EDPWIAISNRYPEGIKLSGRVTNLTDYGCFVEIEEGVEGLVHVSE 308
Query: 219 IS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG----IGS 266
+ SK A + + + +++DEE+ R+ L ++ + + G
Sbjct: 309 MDWTNKNIHPSKVVA---VNNIVDVIVLDIDEERRRISLGLKQCKINPWQEFSETHKKGI 365
Query: 267 VVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
V G ++S+ +G FI + GGI+GL+H+S IS
Sbjct: 366 HVSGKIKSITDFGIFIGLKGGIDGLVHLSDIS 397
>sp|P57395|RS1_BUCAI 30S ribosomal protein S1 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rpsA PE=3 SV=1
Length = 558
Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/275 (24%), Positives = 126/275 (45%), Gaps = 46/275 (16%)
Query: 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALV 117
E QLFEE+ + +T P G+ ++GT+ + LV
Sbjct: 3 ESFAQLFEESLKEIKTRP------------------------GSIIRGTIVSIEKDMVLV 38
Query: 118 DITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL---VLSLRMIQY 174
D KS + +P ++ G++ + + + + +D +LS +
Sbjct: 39 DAGLKSESAIPVEQFQ-------NSQGLLDIQVGDQIDVALDAIEDGFGETLLSREKAKR 91
Query: 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKD 232
AW + + V G + G KGG E+ +R F+P S + + + L GK+
Sbjct: 92 HEAWLILEKAHEKSETVIGIINGKVKGGFTVELNDIRAFLPGSLVDVRPVRDTIHLEGKE 151
Query: 233 LPLKFVEVDEEQSRLVLSNRKAMADSQ---------AQLGIGSVVIGTVQSLKPYGAFID 283
L K +++D++++ +V+S R+A+ +S+ L G V G V++L YGAF+D
Sbjct: 152 LEFKVIKLDQKRNNVVVS-RRAVIESENSAERDQLLENLQEGMHVKGIVKNLTDYGAFVD 210
Query: 284 IGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+GG++GLLH++ ++ RV + ++ GD + + +
Sbjct: 211 LGGVDGLLHITDMAWKRVKHPSEIVNVGDEINIKI 245
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 20/216 (9%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G VKG V + GA VD+ L + ++KH E + G + I
Sbjct: 188 NLQEGMHVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSEI-VNVGDEINIKI 245
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFV 214
+ + + L L+ + E W + E+ + G+V G E+E G+ G V
Sbjct: 246 LKFDRERTRVSLGLKQLG-EDPWIAISKRYPEETKLSGRVTNLTDYGCFVEIEEGVEGLV 304
Query: 215 PFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG--- 263
S++ SK + + + L ++DEE+ R+ L ++ + +
Sbjct: 305 HVSEMDWTNKNIHPSKVVTVNDVVEVMVL---DIDEERRRISLGLKQCKINPWKEFSETH 361
Query: 264 -IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V+G ++S+ +G FI + GGI+GL+H+S IS
Sbjct: 362 KKGVHVLGKIKSITDFGIFIGLNGGIDGLVHLSDIS 397
>sp|Q92HM4|RS1_RICCN 30S ribosomal protein S1 OS=Rickettsia conorii (strain ATCC VR-613
/ Malish 7) GN=rpsA PE=3 SV=1
Length = 568
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/246 (27%), Positives = 120/246 (48%), Gaps = 20/246 (8%)
Query: 84 EEFHSALEKYDFNS-ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE 142
E+F LE D + + T VKG V N +VD+ K+ +P E + E
Sbjct: 22 EDFSKMLETVDTSHIKEKTVVKGQVIEIKNDIIIVDVGLKNEGRIPKSEFL-----ALPE 76
Query: 143 AGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGG 202
G V E F+ E +++ + ++ EL W + + S+ V G + G KGG
Sbjct: 77 VGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGG 132
Query: 203 VVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQA 260
++ G+ F+P SQ+ + + ++ P K + +D++ +V+S R + +S++
Sbjct: 133 FTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRAILEESRS 192
Query: 261 Q--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGD 312
+ + G V+ GTV+++ YGAFID+G ++GLLH++ IS RV + VL
Sbjct: 193 EARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLDFNQ 252
Query: 313 TLKVCL 318
+KV +
Sbjct: 253 KVKVMV 258
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 100/210 (47%), Gaps = 16/210 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V GT+F G VD++ A+LP + + IK + + +K+ F I+ +
Sbjct: 118 GEFVDGTIFGRVKGGFTVDLSG-VVAFLPGSQVDVRPIK---DPTSIMNIKQPFKILSMD 173
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ ++V+S R I E E ++ S E +V++G V G ++ + G +
Sbjct: 174 KKLGNIVVSRRAILEESRSEARDEMLSKIKEGMVLEGTVKNITDYGAFIDLGSVDGLLHL 233
Query: 217 SQISSK--STAEELLGKDLPLKF--VEVDEEQSRLVLSNRKAMADS----QAQLGIGSVV 268
+ IS + E+L + +K ++ DE+ R+ L ++ ++ + + +G +
Sbjct: 234 TDISWGRVNHPSEVLDFNQKVKVMVIKFDEKNKRISLGIKQLDSNPWEAIKEEFPVGKQM 293
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V + YG FI++ G+ GL+H S+IS
Sbjct: 294 TGKVTNFADYGVFIELKDGLEGLVHSSEIS 323
>sp|Q83E09|RS1_COXBU 30S ribosomal protein S1 OS=Coxiella burnetii (strain RSA 493 /
Nine Mile phase I) GN=rpsA PE=1 SV=1
Length = 551
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 28/247 (11%)
Query: 84 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEA 143
E F +L + D G VK TV +V+ KS +P E ++ E
Sbjct: 7 ELFEKSLTETDLRP--GALVKATVVEVRPDRVIVNAGLKSEGIIPASE-----FRNEE-- 57
Query: 144 GIVPGLKEEFVIIGENEADDS----LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGAN 199
P + +EF ++ EA D+ LS + AW + +VKG ++
Sbjct: 58 ---PHVGDEFFVV--IEASDNGFGETRLSREKARRAKAWSELEKAYKAGEMVKGVIIERV 112
Query: 200 KGGVVAEVEGLRGFVPFSQISSKSTAEE--LLGKDLPLKFVEVDEEQSRLVLSNRKAM-- 255
KGG ++ +R F+P S + K + L K++ K +++D+ ++ +V+S R M
Sbjct: 113 KGGFTVDLNSVRAFLPGSLVDVKPVRDPGYLEDKEIDFKIIKMDQRRNNVVVSRRAVMEA 172
Query: 256 ---ADSQA---QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQ 309
A+ QA +L G + G ++++ YGAF+D+GG++GLLH++ ++ RV + +L
Sbjct: 173 ETSAERQARLEELQEGQEIKGVIKNITDYGAFVDLGGVDGLLHITDMAWGRVKHPSDLLN 232
Query: 310 PGDTLKV 316
GD + V
Sbjct: 233 VGDEVHV 239
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 11/152 (7%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEG-LRGFVPFSQISSKSTAEELL-----GK 231
W+ + +D + GKV G+ +EG + G V S IS + EE + G
Sbjct: 350 WQEFAEKHEKDEKITGKVRSITDFGMFIGLEGDIDGLVHLSDISWTESGEEAIRNYKKGD 409
Query: 232 DLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVVIGTVQSLKPYGAFIDIGG- 286
++ + +D E+ R+ L ++ D + +V+ V+ ++ A +++
Sbjct: 410 EVQAVILGIDPERERISLGIKQLEGDPFMEFVESYDKDAVIQAKVKEVESKQAVLELADQ 469
Query: 287 INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+ G + ++ ++DRV D+ L GD + V +
Sbjct: 470 VLGQMRLADYTYDRVKDLTQELNVGDEVAVKI 501
>sp|Q68WL4|RS1_RICTY 30S ribosomal protein S1 OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=rpsA PE=3 SV=1
Length = 568
Score = 79.0 bits (193), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 126/262 (48%), Gaps = 22/262 (8%)
Query: 70 RCRTAP-MEGVSFTLEEFHSALEKYDFNSELGTK--VKGTVFCTDNRGALVDITAKSSAY 126
+ R P + +++ EE S + K S + K VKG V N +VD+ K+
Sbjct: 6 KQRFVPQLAAINYQFEEDFSKMLKTVDTSHIKEKTVVKGQVIEIKNDMIIVDVGLKNEGR 65
Query: 127 LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQS 186
+P E + E G V E F+ E +++ + ++ EL W + + S
Sbjct: 66 IPKSEFL-----SLPEVGDVV---EVFIEKIEGRNGRTILSREKAVKEEL-WGQLEIMCS 116
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQ 244
+ V G + G KGG ++ G+ F+P SQ+ + + ++ P K + +D++
Sbjct: 117 KGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIKDPTSIMNIKQPFKILSMDKKL 176
Query: 245 SRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQI 296
+V+S R + +S+++ + G ++ G V+++ YGAFID+G ++GLLH++ I
Sbjct: 177 GNIVVSRRVILEESRSEARDEMLSKIKEGMILEGVVKNITDYGAFIDLGSVDGLLHLTDI 236
Query: 297 SHDRVADIATVLQPGDTLKVCL 318
S RV + VL+ +KV +
Sbjct: 237 SWGRVNHPSEVLEFNQKVKVMV 258
>sp|P14128|RS1_PROSP 30S ribosomal protein S1 (Fragment) OS=Providencia sp. GN=rpsA PE=3
SV=1
Length = 378
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 81/137 (59%), Gaps = 12/137 (8%)
Query: 191 VKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPLKFVEVDEEQSRLV 248
V G + G KGG E+ G+R F+P S + + + L GK+L K +++D++++ +V
Sbjct: 3 VTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTTHLEGKELEFKVIKLDQKRNNVV 62
Query: 249 LSNRKAMADSQA---------QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHD 299
+S R+A+ +S++ L G V G V++L YGAF+D+GG++GLLH++ ++
Sbjct: 63 VS-RRAVIESESSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLLHITDMAWK 121
Query: 300 RVADIATVLQPGDTLKV 316
RV + ++ GD + V
Sbjct: 122 RVKHPSEIVNVGDEITV 138
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 96/219 (43%), Gaps = 22/219 (10%)
Query: 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155
N + G +VKG V + GA VD+ L + ++KH E + + +E +
Sbjct: 83 NLQEGMEVKGIVKNLTDYGAFVDLGG-VDGLLHITDMAWKRVKHPSE---IVNVGDEITV 138
Query: 156 IGENEADDSLVLSLRMIQY-ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGF 213
+ +SL + Q E W + E + G+V G E+E G+ G
Sbjct: 139 KVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGL 198
Query: 214 VPFSQIS--------SKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLG-- 263
V S++ SK + + + L ++DEE+ R+ L ++ ++ Q
Sbjct: 199 VHVSEMDWTNKNIHPSKVVNVGDVVEVMVL---DIDEERRRISLGLKQCKSNPWQQFAET 255
Query: 264 --IGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHD 299
G V G ++S+ +G FI + GGI+GL+H+S IS +
Sbjct: 256 HNKGDRVEGKIKSITDFGIFIGLEGGIDGLVHLSDISWN 294
>sp|Q9ZD28|RS1_RICPR 30S ribosomal protein S1 OS=Rickettsia prowazekii (strain Madrid E)
GN=rpsA PE=3 SV=1
Length = 568
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 101 TKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160
T VKG V N +VD+ K+ +P E + E G V E F+ E
Sbjct: 40 TVVKGQVIEIKNDMIIVDVGLKNEGRIPKSEFL-----SLPEVGDVV---EVFIEKIEGR 91
Query: 161 ADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220
+++ + ++ EL W + + S+ V G + G KGG ++ G+ F+P SQ+
Sbjct: 92 NGRTILSREKAVKEEL-WGQLEIMCSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVD 150
Query: 221 SKSTAE--ELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIG 270
+ + ++ P K + +D++ +V+S R + +S+++ + G V+ G
Sbjct: 151 VRPIKDPTSIMNIKQPFKILSMDKKLGNIVVSRRVILEESRSEARDEMLSKIKEGIVLEG 210
Query: 271 TVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
V+++ YGAFID+G ++GLLH++ IS RV + VL+ +KV +
Sbjct: 211 VVKNITDYGAFIDLGSVDGLLHLTDISWGRVNHPSEVLEFNQKVKVMV 258
>sp|P38016|RS1_CHLMU 30S ribosomal protein S1 OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=rpsA PE=3 SV=2
Length = 570
Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 120/253 (47%), Gaps = 24/253 (9%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135
M G + T EE S ++ G +KGTV +VD+ KS +P E
Sbjct: 35 MHGFTATEEEPTSEVQP-------GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDS 87
Query: 136 KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKV 195
G+ G + E + + + +VLS + WE E +VKG++
Sbjct: 88 S------EGLSVGAEVEVYLDQTEDEEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQI 141
Query: 196 VGANKGGVVAEVEGLRGFVPFSQISSKS--TAEELLGKDLPLKFVEVDEEQSRLVLSNRK 253
KGG++ ++ G+ F+P SQI +K ++ +GK K ++++ ++ +V+S R+
Sbjct: 142 TRKVKGGLIVDI-GMEAFLPGSQIDNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRE 200
Query: 254 AM--------ADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
+ A+ Q+ IG G V+++ +G F+D+ GI+GLLH++ ++ R+ +
Sbjct: 201 LLEAERISKKAELIEQITIGERRKGIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPS 260
Query: 306 TVLQPGDTLKVCL 318
+++ L+V +
Sbjct: 261 EMVELNQELEVII 273
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 107/249 (42%), Gaps = 32/249 (12%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V+G + GA ++I E I + HV E V
Sbjct: 292 HNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-----------EEGIEGLIHVSEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + + +VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTEHNPWDNIEEKYPIGLRVTAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ + +A +GS + G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLTPNPWDEIEAMFPVGSDISGIVTKITAFGAFVELQNGIEGLIHVSKLSDKPFAKIE 520
Query: 306 TVLQPGDTL 314
+L GD +
Sbjct: 521 DILSIGDKV 529
>sp|O84100|RS1_CHLTR 30S ribosomal protein S1 OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=rpsA PE=3 SV=1
Length = 569
Score = 75.1 bits (183), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 111/229 (48%), Gaps = 17/229 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G +KGTV +VD+ KS +P E G+ G + E +
Sbjct: 52 GAILKGTVVDISKDFVVVDVGLKSEGVIPMSEFIDSS------EGLTVGAEVEVYLDQTE 105
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQI 219
+ + +VLS + WE E +VKG++ KGG++ ++ G+ F+P SQI
Sbjct: 106 DDEGKVVLSREKATRQRQWEYILAHCEEGSIVKGQITRKVKGGLIVDI-GMEAFLPGSQI 164
Query: 220 SSKS--TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAM--------ADSQAQLGIGSVVI 269
+K ++ +GK K ++++ ++ +V+S R+ + A+ Q+ IG
Sbjct: 165 DNKKIKNLDDYVGKVCEFKILKINVDRRNVVVSRRELLEAERISKKAELIEQITIGERRK 224
Query: 270 GTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G V+++ +G F+D+ GI+GLLH++ ++ R+ + +++ L+V +
Sbjct: 225 GIVKNITDFGVFLDLDGIDGLLHITDMTWKRIRHPSEMVELNQELEVII 273
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 106/249 (42%), Gaps = 32/249 (12%)
Query: 87 HSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIV 146
H+ E + G +V+G + GA ++I E I + HV E V
Sbjct: 292 HNPWEDIEKKYPPGKRVRGKIVKLLPYGAFIEI-----------EEGIEGLIHVSEMSWV 340
Query: 147 PGLKEEFVIIGENEADDSLVLSLRMIQYELA----------WERCRQLQSEDVVVKGKVV 196
+ + ++ + + + +VLS++ + +++ W+ + + V ++
Sbjct: 341 KNIVDPNEVVNKGDEVEVVVLSIQKDEGKISLGLKQTKHNPWDNIEEKYPIGLRVTAEIK 400
Query: 197 GANKGGVVAEVE-GLRGFVPFSQIS---SKSTAEELL--GKDLPLKFVEVDEEQSRLVLS 250
G E+E G+ G + S +S S EL G + + VD+E ++ L
Sbjct: 401 NLTNYGAFVELEPGIEGLIHISDMSWIKKVSHPSELFKKGNTVEAVILSVDKESKKITLG 460
Query: 251 NRKAMADS----QAQLGIGSVVIGTVQSLKPYGAFIDI-GGINGLLHVSQISHDRVADIA 305
++ + + +GS + G V + +GAF+++ GI GL+HVS++S A I
Sbjct: 461 VKQLTPNPWDEIEVMFPVGSDISGVVTKITAFGAFVELQNGIEGLIHVSELSEKPFAKIE 520
Query: 306 TVLQPGDTL 314
VL GD +
Sbjct: 521 DVLSIGDKV 529
>sp|Q1RJH1|RS1_RICBR 30S ribosomal protein S1 OS=Rickettsia bellii (strain RML369-C)
GN=rpsA PE=3 SV=1
Length = 572
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 87/159 (54%), Gaps = 11/159 (6%)
Query: 170 RMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--E 227
+ I+ EL W + + S+ V G + G KGG ++ G+ F+P SQ+ + +
Sbjct: 104 KAIKEEL-WGQLELICSKGEFVDGTIFGRVKGGFTVDLSGVVAFLPGSQVDVRPIKDPSS 162
Query: 228 LLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYG 279
++ P K + +D++ +V+S R + +S+++ + G ++ GTV+++ YG
Sbjct: 163 IMNIRQPFKILSMDKKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKNITDYG 222
Query: 280 AFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
AFID+G ++GLLH++ IS RV + VL+ +KV +
Sbjct: 223 AFIDLGSVDGLLHLTDISWARVNHPSEVLEFNQKVKVMV 261
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 99/210 (47%), Gaps = 16/210 (7%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159
G V GT+F G VD++ A+LP + + IK + + +++ F I+ +
Sbjct: 121 GEFVDGTIFGRVKGGFTVDLSG-VVAFLPGSQVDVRPIK---DPSSIMNIRQPFKILSMD 176
Query: 160 EADDSLVLSLRMIQYELAWERCRQLQS---EDVVVKGKVVGANKGGVVAEVEGLRGFVPF 216
+ ++V+S R I E E ++ S E ++++G V G ++ + G +
Sbjct: 177 KKLGNIVVSRRAILEESRSEARDEMLSKIKEGMILEGTVKNITDYGAFIDLGSVDGLLHL 236
Query: 217 SQISSK--STAEELL--GKDLPLKFVEVDEEQSRLVLSNRKAMADS----QAQLGIGSVV 268
+ IS + E+L + + + ++ +EE R+ L ++ + + + +G +
Sbjct: 237 TDISWARVNHPSEVLEFNQKVKVMVIKFNEETKRISLGMKQLDYNPWEKIKEEFPVGKKM 296
Query: 269 IGTVQSLKPYGAFIDI-GGINGLLHVSQIS 297
G V + YG FI++ G+ GL+H S+IS
Sbjct: 297 TGKVTNFADYGVFIELKDGLEGLVHSSEIS 326
>sp|Q9ZKF6|RS1_HELPJ 30S ribosomal protein S1 OS=Helicobacter pylori (strain J99)
GN=rpsA PE=3 SV=1
Length = 552
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
E+ +++GK+VG NKGG + E +G+ F+ S S K+ A + GK + + VD+E
Sbjct: 115 ENAIIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHI-GKRIKACIIRVDKENHS 173
Query: 247 LVLSNRKAM-ADSQAQLGIGS-------VVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+ +S ++ + + QL I V+G V+ + P+G F+ GI+GL+H S+ISH
Sbjct: 174 INISRKRFFEVNDKRQLEISKELLEATEPVLGVVRQITPFGIFVKFKGIDGLVHYSEISH 233
Query: 299 DRVADIATVLQPGDTLKV 316
+ + GD + V
Sbjct: 234 KGPVNPEKYYKEGDEVYV 251
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 15/175 (8%)
Query: 156 IGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFV 214
I +E L LS++ E WE + +K V GV ++ + GF+
Sbjct: 254 IAYDEEKRRLSLSIKAT-IEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFL 312
Query: 215 PFSQIS-----SKSTAEELLGKDLPLKFVEVDEEQSRL-----VLSNRK-AMADSQAQLG 263
S+IS S + +G+++ +K +++D + RL L+NR + +S+ Q
Sbjct: 313 HVSEISWDKNVSHPSHYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ-- 370
Query: 264 IGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+G +V G V +L +GAF+++GG++GLLH D+ + GD +KV +
Sbjct: 371 VGDIVEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKI 425
Score = 31.6 bits (70), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 8/110 (7%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFV----PFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
+V+GKV G + G+ G + F K +G + +K ++++++
Sbjct: 374 IVEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDK 433
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIGGINGLL 291
++ LS + + + SV+ G V S+K +G FI GI+ L+
Sbjct: 434 KISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFIHADGIDVLI 483
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAE--ELLGKDLPL 235
W + ++ G + G KGG+ + +R F+P S + + + GK++
Sbjct: 96 WIALEEAMENGDILSGIINGKVKGGLTVMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEF 155
Query: 236 KFVEVDEEQSRLVLSNRKAMADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGI 287
K +++D++++ +V+S R + + + L GSV+ G V+++ YGAF+D+GGI
Sbjct: 156 KVIKLDKKRNNVVVSRRAVLEATLGEERKALLENLQEGSVIKGIVKNITDYGAFVDLGGI 215
Query: 288 NGLLHVSQISHDRVADIATVLQPG 311
+GLLH++ ++ RV + VL+ G
Sbjct: 216 DGLLHITDLAWRRVKHPSEVLEVG 239
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 102/231 (44%), Gaps = 14/231 (6%)
Query: 100 GTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVP-GLKEEFVIIGE 158
GT++ G V + GA V+I + E K+V + +V G + E +I+
Sbjct: 278 GTRLFGKVSNLTDYGAFVEIEQGIEGLVHVSEMDWTN-KNVHPSKVVQLGDEVEVMILEI 336
Query: 159 NEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGV-VAEVEGLRGFVPFS 217
+E + L ++ Q WE ++ + G V GV V G+ G V S
Sbjct: 337 DEGRRRISLGMKQCQAN-PWEEFAANHNKGDKISGAVKSITDFGVFVGLPGGIDGLVHLS 395
Query: 218 QISSKSTAEELL-----GKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQL----GIGSVV 268
+S + EE + G+++ + +D E+ R+ L ++ D GS+V
Sbjct: 396 DLSWTESGEEAVRKYKKGEEVEAVVLAIDVEKERISLGIKQLEGDPFGNFISVNDKGSLV 455
Query: 269 IGTVQSLKPYGAFIDIGG-INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
G+V+S+ GA I + + G L S+ + DRV D+ T L+ GD ++ +
Sbjct: 456 KGSVKSVDAKGAVIALSDEVEGYLPASEFAADRVEDLTTKLKEGDEVEAVI 506
>sp|P56008|RS1_HELPY 30S ribosomal protein S1 OS=Helicobacter pylori (strain ATCC 700392
/ 26695) GN=rpsA PE=3 SV=1
Length = 556
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 74/138 (53%), Gaps = 9/138 (6%)
Query: 187 EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSR 246
E+ +++GK+VG NKGG + E +G+ F+ S S K+ A + GK + + VD+E
Sbjct: 119 ENAIIEGKIVGKNKGGYIVESQGVEYFLSRSHSSLKNDANHI-GKRVKACIIRVDKENHS 177
Query: 247 LVLS--------NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298
+ +S +++ + S+ L V+G V+ + P+G F++ GI GL+H S+ISH
Sbjct: 178 INISRKRFFEVNDKRQLEVSKELLEATEPVLGVVRQITPFGIFVEAKGIEGLVHYSEISH 237
Query: 299 DRVADIATVLQPGDTLKV 316
+ + GD + V
Sbjct: 238 KGPVNPEKYYKEGDEVYV 255
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 79/166 (47%), Gaps = 15/166 (9%)
Query: 165 LVLSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQISSKS 223
L LS++ E WE + +K V GV ++ + GF+ S+IS
Sbjct: 267 LSLSIKAT-IEDPWEEIQDKLKPGYAIKVVVSNIEHYGVFVDIGNDIEGFLHVSEISWDK 325
Query: 224 TAEE-----LLGKDLPLKFVEVDEEQSRL-----VLSNRK-AMADSQAQLGIGSVVIGTV 272
+G+++ +K +++D + RL L+NR + +S+ Q +G V+ G V
Sbjct: 326 NVSHPNNYLSVGQEIDVKIIDIDPKNRRLRVSLKQLTNRPFDVFESKHQ--VGDVLEGKV 383
Query: 273 QSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318
+L +GAF+++GG++GLLH D+ + GD +KV +
Sbjct: 384 ATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKI 429
Score = 31.6 bits (70), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 190 VVKGKVVGANKGGVVAEVEGLRGFV----PFSQISSKSTAEELLGKDLPLKFVEVDEEQS 245
V++GKV G + G+ G + F K +G + +K ++++++
Sbjct: 378 VLEGKVATLTDFGAFLNLGGVDGLLHNHDAFWDKDKKCKDHYKIGDVIKVKILKINKKDK 437
Query: 246 RLVLSNRKAMADSQAQLG----IGSVVIGTVQSLKPYGAFIDIGGINGLL 291
++ LS + + + SV+ G V S+K +G FI+ GI+ L+
Sbjct: 438 KISLSAKHLVTSPTEEFAQKHKTDSVIQGKVVSIKDFGVFINADGIDVLI 487
>sp|Q8RI52|ISPH_FUSNN 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=ispH PE=3 SV=1
Length = 827
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 112/253 (44%), Gaps = 19/253 (7%)
Query: 76 MEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAY-LPTQEACI 134
M V+ EF LE++ N E +V+G + D + +D+ + +A + T E
Sbjct: 287 MSNVNENQNEFSLMLEEFLPNQE--KRVEGVIESMDQNFSYLDVPGERTAVRVRTDELKD 344
Query: 135 HKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDVVVKGK 194
+K+ E ++ GL EE ++ + + S R I+ E WE+ ++ K
Sbjct: 345 YKVGDTVEV-LITGLSEE------DDDQEYITASRRKIEVEKNWEKIEDSFKNKTILDAK 397
Query: 195 VVGANKGGVVAEVEGLRGFVPFSQISSKSTAEELLGKDL-----PLKFVEVDEEQSRLVL 249
V KGG + E GF+P S + E++ GK + +K D++ ++
Sbjct: 398 VTKKIKGGYLVEAFLYPGFLPNSLSEISDSEEKVNGKKIQVIVKDIKMDPKDKKNRKITY 457
Query: 250 SNRKAMADSQ----AQLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIA 305
S + Q A L +G +V V + +G +DI + G +H+S++S R+ ++
Sbjct: 458 SVKDIRLAEQEKEFAGLAVGQIVDCVVTEVLDFGLAVDINTLKGFIHISEVSWKRLDKLS 517
Query: 306 TVLQPGDTLKVCL 318
+ GD +K +
Sbjct: 518 DNYKVGDKIKAVV 530
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 202 GVVAEVEGLRGFVPFSQISSKS----TAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMAD 257
G+ ++ L+GF+ S++S K + +G + V +DE + + LS +K D
Sbjct: 491 GLAVDINTLKGFIHISEVSWKRLDKLSDNYKVGDKIKAVVVSLDEAKRNVKLSIKKLEED 550
Query: 258 SQA----QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISH-DRVADIATVLQPG 311
A + + + G V + PYGAF++I G+ GL+H+S S + ++A ++
Sbjct: 551 PWATVANEFKVDDEIEGIVTKVLPYGAFVEIKPGVEGLVHISDFSWTKKKVNVADYVKER 610
Query: 312 DTLKV 316
+ +KV
Sbjct: 611 EKIKV 615
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 69/148 (46%), Gaps = 12/148 (8%)
Query: 178 WERCRQLQSEDVVVKGKVVGANKGGVVAEV-EGLRGFVPFSQISSKSTAEEL----LGKD 232
WE + + D V+KGKVV G+ E+ +G+ FV S + EE+ +G +
Sbjct: 639 WETAEKDFAIDTVIKGKVVEVKPFGIFVEIADGIDAFVHSSDYN--WVGEEIPKFEIGNE 696
Query: 233 LPLKFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSLKPYGAFID-IGGI 287
+ LK E+D ++ S + + + +G+ V ++++ +G FI+ I GI
Sbjct: 697 VELKITELDLNNKKIKGSLKALRKSPWEHAMEEYKVGTTVEKKIKTVADFGLFIELIKGI 756
Query: 288 NGLLHVSQISHDRVADIATVLQPGDTLK 315
+G + S + + +I GD +K
Sbjct: 757 DGFIPTQFASKEFIKNIRDKFSEGDVVK 784
>sp|Q895G2|ISPH_CLOTE 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Clostridium
tetani (strain Massachusetts / E88) GN=ispH PE=3 SV=1
Length = 635
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 72/129 (55%), Gaps = 13/129 (10%)
Query: 201 GGVVAEVEGL-RGFVPFSQISSKSTAEELL--GKDLPLKFVEVDE--EQSRLVLSNRKAM 255
GG+++ + + R F+P S + + + + G +L + +E +E +R+V S R +
Sbjct: 399 GGLISIYKNIVRVFIPASHVELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVASRRDLL 458
Query: 256 ADSQAQ--------LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATV 307
+ Q++ L ++ G V+ L +GAF++I G++GLLHVS+IS RV + +
Sbjct: 459 KEEQSKVEEETWSSLEKDTIKEGEVRRLTDFGAFVNINGVDGLLHVSEISWGRVEKPSDM 518
Query: 308 LQPGDTLKV 316
L+ GD +KV
Sbjct: 519 LKVGDKIKV 527
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 107/221 (48%), Gaps = 20/221 (9%)
Query: 111 DNRGALVDITAK-SSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG--ENEADDSLVL 167
D G L+ I ++P +++HV++ I G + II E + +V
Sbjct: 396 DVNGGLISIYKNIVRVFIPASHV---ELRHVDDLSIYKGCELTVNIIEFEEGRNNTRIVA 452
Query: 168 SLRMI----QYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS--- 220
S R + Q ++ E L+ +D + +G+V G + G+ G + S+IS
Sbjct: 453 SRRDLLKEEQSKVEEETWSSLE-KDTIKEGEVRRLTDFGAFVNINGVDGLLHVSEISWGR 511
Query: 221 -SKSTAEELLGKDLPLKFVEVDEEQSRLVLS----NRKAMADSQAQLGIGSVVIGTVQSL 275
K + +G + + ++D+++ +L LS + D + + +G++V+GTV
Sbjct: 512 VEKPSDMLKVGDKIKVYIKDIDKDKKKLALSIKDLTKDPWKDVEVKYPVGNIVLGTVVRF 571
Query: 276 KPYGAFIDI-GGINGLLHVSQISHDRVADIATVLQPGDTLK 315
+GAF+++ G++GL+H+SQISH RV + L G+ +K
Sbjct: 572 ASFGAFVELEPGVDGLIHISQISHKRVDRVEDELSIGEQVK 612
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,171,942
Number of Sequences: 539616
Number of extensions: 4336103
Number of successful extensions: 15941
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 501
Number of HSP's that attempted gapping in prelim test: 14783
Number of HSP's gapped (non-prelim): 1055
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)