Query 021034
Match_columns 318
No_of_seqs 349 out of 1898
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 11:46:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021034.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021034hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3go5_A Multidomain protein wit 100.0 2.6E-31 9E-36 243.0 23.6 186 98-318 5-200 (285)
2 3go5_A Multidomain protein wit 99.9 1.2E-22 4.3E-27 185.6 18.3 148 96-254 66-217 (285)
3 1kl9_A Eukaryotic translation 99.7 5.5E-20 1.9E-24 157.4 -5.3 122 97-222 13-138 (182)
4 1kl9_A Eukaryotic translation 99.7 2.9E-19 1E-23 152.8 -5.7 116 186-303 14-143 (182)
5 2a19_A EIF-2- alpha, eukaryoti 99.6 1.1E-16 3.7E-21 136.2 2.6 104 98-203 14-120 (175)
6 1q8k_A Eukaryotic translation 99.5 1.2E-15 3.9E-20 140.4 1.0 109 96-206 10-121 (308)
7 2khj_A 30S ribosomal protein S 99.5 2.9E-14 1E-18 112.1 8.4 86 88-174 20-105 (109)
8 2khi_A 30S ribosomal protein S 99.5 3.1E-14 1.1E-18 113.0 7.7 93 88-182 19-112 (115)
9 2k52_A Uncharacterized protein 99.5 4.9E-13 1.7E-17 99.2 11.2 74 96-174 2-75 (80)
10 2a19_A EIF-2- alpha, eukaryoti 99.5 8.9E-15 3E-19 124.3 1.8 94 187-280 15-120 (175)
11 2k4k_A GSP13, general stress p 99.5 4E-13 1.4E-17 108.8 11.2 78 96-174 4-81 (130)
12 1luz_A Protein K3, protein K2; 99.5 1.6E-13 5.3E-18 103.7 7.8 76 96-174 8-86 (88)
13 3aev_A Translation initiation 99.4 2.7E-14 9.4E-19 129.5 2.5 109 96-206 8-119 (275)
14 2khj_A 30S ribosomal protein S 99.4 5.1E-13 1.7E-17 104.9 7.5 88 167-255 12-104 (109)
15 2khi_A 30S ribosomal protein S 99.4 5.4E-13 1.9E-17 105.8 6.8 94 168-262 12-111 (115)
16 2cqo_A Nucleolar protein of 40 99.4 6.8E-13 2.3E-17 105.8 7.3 90 90-181 13-105 (119)
17 1q8k_A Eukaryotic translation 99.4 4.5E-14 1.5E-18 129.9 0.1 98 186-283 12-121 (308)
18 2eqs_A ATP-dependent RNA helic 99.4 2.7E-12 9.1E-17 99.8 9.7 76 96-174 9-88 (103)
19 2k4k_A GSP13, general stress p 99.3 2.5E-12 8.6E-17 104.1 7.6 59 260-318 3-62 (130)
20 2k52_A Uncharacterized protein 99.3 9.1E-12 3.1E-16 92.2 9.6 71 185-256 3-75 (80)
21 2eqs_A ATP-dependent RNA helic 99.3 4.9E-12 1.7E-16 98.3 6.2 59 260-318 8-71 (103)
22 3aev_A Translation initiation 99.3 6.9E-13 2.3E-17 120.3 1.4 98 186-283 10-119 (275)
23 1luz_A Protein K3, protein K2; 99.3 7.7E-12 2.6E-16 94.3 6.3 70 186-256 10-86 (88)
24 3cw2_C Translation initiation 99.2 2E-12 6.9E-17 116.9 3.6 102 96-199 8-111 (266)
25 2cqo_A Nucleolar protein of 40 99.2 3.9E-12 1.3E-16 101.4 4.5 88 177-264 12-107 (119)
26 3psi_A Transcription elongatio 99.2 3.7E-11 1.3E-15 127.5 13.0 117 57-174 859-977 (1219)
27 1wi5_A RRP5 protein homolog; S 99.1 9.8E-11 3.4E-15 93.2 7.7 78 96-174 18-97 (119)
28 3psf_A Transcription elongatio 99.1 1.8E-11 6E-16 128.1 3.9 121 57-178 862-984 (1030)
29 1hh2_P NUSA, N utilization sub 99.1 1.5E-10 5.2E-15 107.5 9.6 123 36-182 86-211 (344)
30 4aid_A Polyribonucleotide nucl 99.1 6E-12 2.1E-16 127.3 -0.2 133 43-182 579-717 (726)
31 1go3_E DNA-directed RNA polyme 99.0 1.4E-09 4.7E-14 93.3 11.0 78 95-174 77-170 (187)
32 3cdi_A Polynucleotide phosphor 99.0 3.2E-11 1.1E-15 122.5 0.0 121 58-181 580-706 (723)
33 3bzc_A TEX; helix-turn-helix, 99.0 1.4E-10 4.8E-15 118.5 3.7 111 58-173 617-727 (785)
34 2nn6_I 3'-5' exoribonuclease C 99.0 1.4E-09 4.8E-14 94.8 8.8 77 96-173 78-164 (209)
35 1wi5_A RRP5 protein homolog; S 99.0 2.3E-10 7.9E-15 91.1 3.2 70 249-318 3-78 (119)
36 1hh2_P NUSA, N utilization sub 99.0 9.7E-11 3.3E-15 108.9 1.0 124 145-272 87-220 (344)
37 2bh8_A 1B11; transcription, mo 98.9 1.2E-09 4.1E-14 84.3 6.4 81 187-301 13-99 (101)
38 3cw2_C Translation initiation 98.9 3.4E-10 1.2E-14 102.3 3.8 58 261-318 8-68 (266)
39 1go3_E DNA-directed RNA polyme 98.9 1.9E-09 6.3E-14 92.5 6.9 58 261-318 78-146 (187)
40 3psi_A Transcription elongatio 98.9 1.5E-09 5.1E-14 115.3 7.2 59 260-318 898-958 (1219)
41 3m7n_A Putative uncharacterize 98.9 4.3E-09 1.5E-13 89.6 8.6 71 96-173 55-135 (179)
42 2je6_I RRP4, exosome complex R 98.8 7.2E-09 2.5E-13 92.8 8.7 75 96-172 71-148 (251)
43 4ayb_E DNA-directed RNA polyme 98.8 1.9E-08 6.6E-13 85.6 10.7 78 95-174 77-169 (180)
44 2ba0_A Archeal exosome RNA bin 98.8 1.5E-08 5.1E-13 89.5 10.2 75 96-172 54-129 (229)
45 1e3p_A Guanosine pentaphosphat 98.8 1.3E-10 4.5E-15 118.4 -3.5 87 95-184 663-753 (757)
46 4ayb_E DNA-directed RNA polyme 98.8 6.5E-09 2.2E-13 88.6 7.3 58 261-318 78-146 (180)
47 3m7n_A Putative uncharacterize 98.8 8.3E-09 2.8E-13 87.9 7.5 56 262-318 56-122 (179)
48 4aid_A Polyribonucleotide nucl 98.8 5.7E-10 2E-14 113.0 0.1 59 260-318 633-692 (726)
49 1e3p_A Guanosine pentaphosphat 98.8 1.2E-10 4.1E-15 118.7 -5.0 130 99-263 609-751 (757)
50 1y14_B B16, RPB7, DNA-directed 98.8 1.1E-08 3.7E-13 86.5 7.8 56 263-318 82-147 (171)
51 3bzc_A TEX; helix-turn-helix, 98.8 1.1E-09 3.7E-14 112.0 1.9 59 260-318 650-709 (785)
52 2z0s_A Probable exosome comple 98.8 1.4E-08 4.6E-13 90.2 8.0 74 96-171 63-140 (235)
53 1y14_B B16, RPB7, DNA-directed 98.8 4.3E-08 1.5E-12 82.8 10.5 75 95-171 79-165 (171)
54 3psf_A Transcription elongatio 98.8 9.1E-10 3.1E-14 115.3 0.0 59 260-318 901-961 (1030)
55 2c35_B Human RPB7, DNA-directe 98.7 1.4E-08 4.6E-13 86.0 7.1 56 263-318 80-147 (172)
56 3cdi_A Polynucleotide phosphor 98.7 1.1E-09 3.9E-14 111.2 0.0 60 259-318 622-682 (723)
57 2b8k_G B16, DNA-directed RNA p 98.7 1.9E-08 6.6E-13 87.9 7.0 56 263-318 82-147 (215)
58 2b8k_G B16, DNA-directed RNA p 98.7 4.4E-08 1.5E-12 85.6 9.2 77 95-174 79-168 (215)
59 2nn6_I 3'-5' exoribonuclease C 98.7 9.6E-09 3.3E-13 89.5 4.5 58 261-318 78-146 (209)
60 2c35_B Human RPB7, DNA-directe 98.7 7.4E-08 2.5E-12 81.4 9.5 76 95-172 77-166 (172)
61 1k0r_A NUSA; two component arr 98.6 2E-07 7E-12 86.9 11.7 79 88-175 121-208 (366)
62 2asb_A Transcription elongatio 98.6 1.5E-07 5.2E-12 83.3 9.8 79 96-181 4-91 (251)
63 3h0g_G DNA-directed RNA polyme 98.6 1.4E-08 4.7E-13 86.0 2.4 57 262-318 82-148 (172)
64 2je6_I RRP4, exosome complex R 98.5 7E-08 2.4E-12 86.3 4.6 58 261-318 71-132 (251)
65 3h0g_G DNA-directed RNA polyme 98.5 1.1E-07 3.8E-12 80.3 5.3 75 95-171 80-166 (172)
66 2ba0_A Archeal exosome RNA bin 98.4 3.8E-07 1.3E-11 80.5 6.5 58 261-318 54-113 (229)
67 2z0s_A Probable exosome comple 98.4 1.8E-07 6.2E-12 82.9 3.9 58 261-318 63-125 (235)
68 2bh8_A 1B11; transcription, mo 98.3 1.5E-06 5.2E-11 66.8 6.2 81 98-222 12-97 (101)
69 2bx2_L Ribonuclease E, RNAse E 98.2 1.4E-06 5E-11 85.0 6.5 59 260-318 41-111 (517)
70 3ayh_B DNA-directed RNA polyme 98.2 1.4E-06 4.6E-11 75.6 5.6 56 263-318 80-154 (203)
71 2bx2_L Ribonuclease E, RNAse E 98.2 4.6E-06 1.6E-10 81.4 9.6 73 96-169 42-125 (517)
72 2ckz_B C25, DNA-directed RNA p 98.0 5.4E-06 1.8E-10 72.5 5.8 56 263-318 80-150 (218)
73 2id0_A Exoribonuclease 2; RNAs 98.0 3E-05 1E-09 78.2 10.9 73 96-169 555-642 (644)
74 2ja9_A Exosome complex exonucl 97.9 5.2E-05 1.8E-09 63.9 9.3 74 96-172 4-78 (175)
75 2nn6_H Exosome complex exonucl 97.9 1.9E-05 6.6E-10 72.3 6.9 75 96-172 92-176 (308)
76 3ayh_B DNA-directed RNA polyme 97.9 5.7E-05 2E-09 65.3 9.5 65 96-162 78-161 (203)
77 2id0_A Exoribonuclease 2; RNAs 97.8 9.3E-05 3.2E-09 74.7 10.4 66 186-251 557-642 (644)
78 2asb_A Transcription elongatio 97.7 6.8E-05 2.3E-09 66.3 8.0 66 186-254 6-82 (251)
79 1k0r_A NUSA; two component arr 97.7 4.5E-05 1.5E-09 71.1 7.0 66 186-254 129-205 (366)
80 2ckz_B C25, DNA-directed RNA p 97.7 0.00011 3.9E-09 64.1 8.5 68 96-164 78-159 (218)
81 2vnu_D Exosome complex exonucl 97.4 0.00025 8.6E-09 72.8 7.9 64 189-252 671-760 (760)
82 2vnu_D Exosome complex exonucl 97.4 0.00034 1.1E-08 71.9 8.4 69 101-170 671-760 (760)
83 2ja9_A Exosome complex exonucl 97.3 0.00037 1.3E-08 58.6 6.8 56 262-318 5-62 (175)
84 2nn6_H Exosome complex exonucl 97.3 0.00012 4.1E-09 67.0 3.3 58 261-318 92-160 (308)
85 2nn6_G Exosome complex exonucl 97.2 0.00077 2.6E-08 61.1 7.9 73 96-171 124-196 (289)
86 2wp8_J Exosome complex exonucl 97.2 0.00052 1.8E-08 72.1 7.5 70 100-170 887-977 (977)
87 2wp8_J Exosome complex exonucl 97.2 0.00039 1.3E-08 73.0 6.5 66 187-252 886-977 (977)
88 2nn6_G Exosome complex exonucl 95.9 0.012 4.2E-07 53.2 6.2 56 262-318 125-181 (289)
89 2rf4_A DNA-directed RNA polyme 94.6 0.14 4.9E-06 44.1 8.9 70 95-164 125-205 (214)
90 3d0f_A Penicillin-binding 1 tr 92.9 0.7 2.4E-05 34.9 9.0 57 97-154 31-93 (106)
91 3d0f_A Penicillin-binding 1 tr 92.1 0.39 1.3E-05 36.4 6.6 54 264-317 33-93 (106)
92 2rf4_A DNA-directed RNA polyme 89.4 0.96 3.3E-05 38.9 7.3 60 186-245 128-204 (214)
93 3h8z_A FragIle X mental retard 86.6 1.6 5.6E-05 34.3 6.4 88 98-211 13-102 (128)
94 3h8z_A FragIle X mental retard 85.3 2 6.8E-05 33.8 6.3 54 264-317 14-70 (128)
95 2r7d_A Ribonuclease II family 84.7 3.2 0.00011 39.9 8.7 59 98-169 402-460 (469)
96 4b9x_A TDRD1, tudor domain-con 84.6 18 0.00061 30.8 14.0 136 145-285 13-177 (226)
97 3cam_A Cold-shock domain famil 82.8 9 0.00031 26.2 8.2 49 104-157 3-54 (67)
98 1wfq_A UNR protein; beta-barre 81.1 14 0.00046 26.9 10.4 56 96-157 12-68 (89)
99 1jjg_A M156R; beta barrel, S1 81.0 7.3 0.00025 28.5 7.2 64 95-161 28-94 (102)
100 4b9w_A TDRD1, tudor domain-con 80.9 23 0.00079 29.4 14.4 135 145-284 13-176 (201)
101 3i2z_B RNA chaperone, negative 80.7 12 0.0004 25.9 8.4 51 102-157 5-58 (71)
102 1h95_A CSD, Y-box binding prot 79.6 13 0.00045 26.3 8.4 62 100-164 6-70 (79)
103 2yty_A Cold shock domain-conta 77.2 7.1 0.00024 28.4 6.4 53 98-156 14-67 (88)
104 3i4o_A Translation initiation 76.7 7.4 0.00025 27.8 6.2 63 101-168 14-77 (79)
105 2k5n_A Putative cold-shock pro 75.5 18 0.00062 25.3 9.1 53 102-164 2-57 (74)
106 1jjg_A M156R; beta barrel, S1 74.0 23 0.00077 25.9 8.1 56 186-242 31-93 (102)
107 3aqq_A Calcium-regulated heat 73.5 14 0.00047 29.6 7.8 52 99-157 59-113 (147)
108 2r7d_A Ribonuclease II family 71.6 3.7 0.00013 39.4 4.7 56 186-250 402-459 (469)
109 1c9o_A CSPB, cold-shock protei 71.4 17 0.00058 24.6 6.9 49 103-157 2-53 (66)
110 3i4o_A Translation initiation 69.5 5.3 0.00018 28.6 4.0 62 189-250 14-77 (79)
111 2kcm_A Cold shock domain famil 68.8 23 0.00078 24.7 7.2 53 104-164 2-58 (74)
112 1h95_A CSD, Y-box binding prot 68.6 21 0.00073 25.1 7.1 53 265-317 6-62 (79)
113 2k5n_A Putative cold-shock pro 65.3 19 0.00064 25.2 6.1 42 268-317 3-49 (74)
114 2yty_A Cold shock domain-conta 64.2 13 0.00044 27.0 5.3 48 264-317 15-65 (88)
115 3a0j_A Cold shock protein; OB- 64.0 19 0.00064 25.0 6.0 49 103-157 2-53 (73)
116 4b9x_A TDRD1, tudor domain-con 61.7 60 0.0021 27.4 10.1 96 99-207 79-176 (226)
117 4b9w_A TDRD1, tudor domain-con 58.5 77 0.0026 26.1 10.4 96 99-207 79-176 (201)
118 3ts2_A Protein LIN-28 homolog 56.6 33 0.0011 27.3 7.0 52 101-157 8-69 (148)
119 2ytx_A Cold shock domain-conta 54.5 25 0.00087 25.8 5.5 52 99-156 15-67 (97)
120 3ulj_A LIN28B, DNA-binding pro 53.2 53 0.0018 23.8 7.0 51 102-157 8-68 (90)
121 2ytx_A Cold shock domain-conta 52.5 17 0.00057 26.9 4.2 47 265-317 16-65 (97)
122 4hcz_A PHD finger protein 1; p 52.4 46 0.0016 22.1 5.8 35 99-133 16-52 (58)
123 1cuk_A RUVA protein; DNA repai 52.0 94 0.0032 26.0 9.4 67 102-178 4-71 (203)
124 1g6p_A Cold shock protein TMCS 52.0 51 0.0018 22.1 7.1 47 104-156 2-51 (66)
125 2ytv_A Cold shock domain-conta 50.6 12 0.00042 26.5 3.1 50 101-157 7-58 (79)
126 2wac_A CG7008-PA; unknown func 50.5 1E+02 0.0036 25.3 11.7 97 99-207 65-163 (218)
127 2lss_A Cold shock-like protein 55.9 3.3 0.00011 28.7 0.0 51 102-157 4-57 (70)
128 1d7q_A Translation initiation 49.9 94 0.0032 24.6 9.0 69 100-174 30-99 (143)
129 1wfq_A UNR protein; beta-barre 48.1 74 0.0025 22.9 8.1 51 188-240 16-69 (89)
130 2dgy_A MGC11102 protein; EIF-1 48.1 65 0.0022 24.3 7.0 71 96-173 11-83 (111)
131 1fr3_A MOP, molybdate/tungstat 48.1 5.2 0.00018 26.7 0.7 46 266-318 7-58 (67)
132 3i2z_B RNA chaperone, negative 47.4 52 0.0018 22.5 5.9 46 267-317 5-55 (71)
133 1gut_A Mopii, molybdate bindin 44.9 5.8 0.0002 26.7 0.6 46 266-318 7-59 (68)
134 2ztd_A Holliday junction ATP-d 44.3 1.2E+02 0.0042 25.5 8.9 62 102-173 20-82 (212)
135 2xk0_A Polycomb protein PCL; t 44.0 52 0.0018 22.6 5.2 34 99-132 28-61 (69)
136 2jk8_A BEPA, putative cell fil 43.3 80 0.0027 28.0 8.1 54 96-155 247-300 (302)
137 2wg5_A General control protein 40.6 1.1E+02 0.0037 22.8 7.2 46 99-152 36-82 (109)
138 1x65_A UNR protein; cell-free 40.6 15 0.00051 26.7 2.2 50 101-157 7-57 (89)
139 3aqq_A Calcium-regulated heat 39.6 42 0.0014 26.8 5.0 48 263-317 58-110 (147)
140 1yez_A MM1357; MAR30, autostru 38.9 86 0.0029 20.9 6.9 48 96-159 10-58 (68)
141 1cuk_A RUVA protein; DNA repai 38.5 97 0.0033 25.9 7.4 56 190-249 4-62 (203)
142 2eqj_A Metal-response element- 38.3 93 0.0032 21.2 6.1 34 99-132 26-61 (66)
143 1ixr_A Holliday junction DNA h 35.0 78 0.0027 26.2 6.1 49 102-160 4-53 (191)
144 2m0o_A PHD finger protein 1; t 34.8 86 0.0029 22.0 5.2 35 99-133 39-75 (79)
145 2jk8_A BEPA, putative cell fil 34.7 68 0.0023 28.5 6.1 53 262-318 248-300 (302)
146 1yvc_A MRR5; structure, autost 34.2 1.1E+02 0.0037 20.7 6.7 48 96-159 12-60 (70)
147 3v2d_O 50S ribosomal protein L 29.2 1.5E+02 0.0052 22.7 6.4 49 229-293 35-89 (122)
148 2qtx_A Uncharacterized protein 28.0 1.4E+02 0.0046 20.7 5.3 35 186-220 33-67 (71)
149 2vb2_X Copper protein, cation 27.8 1.7E+02 0.0057 20.9 6.4 44 232-275 17-75 (88)
150 3ts2_A Protein LIN-28 homolog 27.8 1.7E+02 0.0057 23.0 6.8 51 189-240 8-70 (148)
151 2l55_A SILB,silver efflux prot 26.4 1.2E+02 0.0042 21.3 5.1 49 103-158 6-61 (82)
152 3r8s_K 50S ribosomal protein L 26.0 2.2E+02 0.0074 21.8 6.8 50 229-294 35-90 (122)
153 2qcp_X Cation efflux system pr 25.9 1.7E+02 0.0058 20.4 6.4 44 232-275 9-67 (80)
154 2lj0_A Sorbin and SH3 domain-c 24.9 1.1E+02 0.0039 20.2 4.5 35 96-132 24-60 (65)
155 2qtx_A Uncharacterized protein 24.3 1.5E+02 0.0052 20.4 5.0 36 262-297 32-67 (71)
156 1ug1_A KIAA1010 protein; struc 24.2 1.4E+02 0.0048 21.7 5.1 38 95-134 34-75 (92)
157 3ddy_A Lumazine protein, LUMP; 23.9 3E+02 0.01 22.5 9.0 128 96-238 35-183 (186)
158 1c9o_A CSPB, cold-shock protei 22.5 1.8E+02 0.006 19.3 7.2 48 191-239 2-53 (66)
159 2cs7_A Pneumococcal histidine 22.2 84 0.0029 20.6 3.2 29 194-222 16-44 (55)
160 2do3_A Transcription elongatio 21.6 51 0.0018 22.7 2.1 16 301-316 11-26 (69)
161 2e5q_A PHD finger protein 19; 21.4 1.1E+02 0.0038 20.5 3.7 36 98-133 19-56 (63)
162 1jt8_A EIF-1A, probable transl 21.3 49 0.0017 24.6 2.2 68 100-173 19-88 (102)
163 1v1c_A Obscurin; muscle, sarco 20.8 2.1E+02 0.0073 19.7 5.8 38 95-133 24-66 (71)
164 2bzy_A CRK-like protein, CRKL 20.7 1.7E+02 0.0059 18.9 4.9 35 96-133 21-56 (67)
165 2jpp_A Translational repressor 20.7 1.1E+02 0.0039 21.0 3.8 28 145-174 12-39 (70)
166 2lx7_A GAS-7, growth arrest-sp 20.6 44 0.0015 22.0 1.7 35 96-132 22-57 (60)
167 2bti_A Carbon storage regulato 20.5 1.4E+02 0.0046 20.2 4.0 32 140-174 10-41 (63)
168 1kq1_A HFQ, HOST factor for Q 20.4 1.9E+02 0.0066 20.2 5.0 37 262-298 26-62 (77)
169 1vpz_A Carbon storage regulato 20.4 1.3E+02 0.0043 21.0 4.0 33 139-174 19-51 (73)
170 3qii_A PHD finger protein 20; 20.4 1.9E+02 0.0065 20.7 5.0 34 100-133 35-69 (85)
171 3p8d_A Medulloblastoma antigen 20.2 2.1E+02 0.0071 19.4 5.0 35 99-133 19-54 (67)
No 1
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=2.6e-31 Score=243.03 Aligned_cols=186 Identities=17% Similarity=0.114 Sum_probs=160.8
Q ss_pred CCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHH
Q 021034 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~ 177 (318)
.+|++++|+|+++.++|+||+++ +.+||||.+|+.. ++||+++|+|+. +.++++++|.+.+.
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~~-----------~vGdevev~v~~--d~~~r~iat~~~p~---- 66 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQH-----------TVGDTVKGFAYT--DMKQKLRLTTLEVT---- 66 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCCC-----------CTTSEEEEEEEE--CTTSCEEEECSCCC----
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCcc-----------ccCCEEEEEEEE--CCCCCEEEeccccc----
Confidence 47999999999999999999997 7999999999832 589999999973 45778889987653
Q ss_pred HHHHhhhcCCCcEEEEEEEEEE-cCeEEEEECC--EEEEEeCcccCCcCCcchhcCCeEeEEEEEEecccCeEeeehhhh
Q 021034 178 WERCRQLQSEDVVVKGKVVGAN-KGGVVAEVEG--LRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKA 254 (318)
Q Consensus 178 ~~~~~~~~~~G~iv~g~V~~v~-~~G~~V~i~g--l~gfip~s~ls~~~~~~~~vGq~v~~kVl~vd~~~~~i~lS~K~~ 254 (318)
++.|+++.|+|++++ ++|+||+++. .+||+|.|++++..+....+||++.+. +++|+ ++||.+|+|+.
T Consensus 67 -------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~ 137 (285)
T 3go5_A 67 -------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKELWPKKGDQLYIR-LEVDK-KDRIWGLLAYQ 137 (285)
T ss_dssp -------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGGSCCTTCEEEEE-EEECT-TSCEEEEECCH
T ss_pred -------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCcccccccCCCCEEEEE-EEECC-CCcEEEEehhh
Confidence 369999999999999 7999999973 899999999998654333489999765 68998 78999999865
Q ss_pred -hhhh----HhhcccCeEEEEEEEEEEcceEEE-EEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 255 -MADS----QAQLGIGSVVIGTVQSLKPYGAFI-DIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 255 -l~~~----~~~l~~G~~v~G~V~~i~~~G~fV-~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
..++ .+.+++|++|+|+|++++++|+|| .++ |+.||||+||+++ .+++||.|+|+|
T Consensus 138 ~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~--------~l~~Gd~v~~~V 200 (285)
T 3go5_A 138 EDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA--------EPRLGQVLDARV 200 (285)
T ss_dssp HHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS--------CCCTTCEEEEEE
T ss_pred hhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc--------cCCCCCEEEEEE
Confidence 2333 367899999999999999999999 997 8999999999984 499999999986
No 2
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.90 E-value=1.2e-22 Score=185.58 Aligned_cols=148 Identities=16% Similarity=0.039 Sum_probs=130.1
Q ss_pred CCCCCCEEEEEEEEEE-CCeEEEEeCC-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTD-NRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~-~~G~~V~i~~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.+++|+++.|+|++++ +.||||++|. +.+||+|.+|+++.... . +++||.+.|+ +.+|+ ++|+.+|+|...
T Consensus 66 ~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~~~----~-~~~Gd~v~v~-l~iD~-~~Ri~ls~k~~~ 138 (285)
T 3go5_A 66 TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELKEL----W-PKKGDQLYIR-LEVDK-KDRIWGLLAYQE 138 (285)
T ss_dssp CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSGGG----S-CCTTCEEEEE-EEECT-TSCEEEEECCHH
T ss_pred cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccccc----c-cCCCCEEEEE-EEECC-CCcEEEEehhhh
Confidence 4679999999999999 7999999987 68999999999875321 2 6899999766 68887 789999999876
Q ss_pred hhHHHHHHhhhcCCCcEEEEEEEEEEcCeEEE-EEC-CEEEEEeCcccCCcCCcchhcCCeEeEEEEEEecccCeEeeeh
Q 021034 174 YELAWERCRQLQSEDVVVKGKVVGANKGGVVA-EVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSN 251 (318)
Q Consensus 174 ~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V-~i~-gl~gfip~s~ls~~~~~~~~vGq~v~~kVl~vd~~~~~i~lS~ 251 (318)
...+|+...+.++.|+.|+|+|.+++++|+|| .++ |+.||||.|+++.... +||+|+++|+++|++++||.||+
T Consensus 139 ~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~~l~----~Gd~v~~~V~~id~~d~kI~LSl 214 (285)
T 3go5_A 139 DFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYAEPR----LGQVLDARVIGFREVDRTLNLSL 214 (285)
T ss_dssp HHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSSCCC----TTCEEEEEEEEEETTTTEEEEEC
T ss_pred hcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccccCC----CCCEEEEEEEEEECCCCeEEEEe
Confidence 56789877777889999999999999999999 996 8999999999985422 89999999999999899999999
Q ss_pred hhh
Q 021034 252 RKA 254 (318)
Q Consensus 252 K~~ 254 (318)
|+.
T Consensus 215 k~~ 217 (285)
T 3go5_A 215 KPR 217 (285)
T ss_dssp SCC
T ss_pred Chh
Confidence 985
No 3
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.72 E-value=5.5e-20 Score=157.35 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=101.0
Q ss_pred CCCCCEEEEEEEEEECCeEEEEe--CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 97 SELGTKVKGTVFCTDNRGALVDI--TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 97 ~~~G~iv~G~V~~i~~~G~~V~i--~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
+++|+++.|+|+++.++|+||++ +++.+|++|+||+++.++.++.+. +++||.|.|+|+++|.+++++.||+|+...
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~-~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKL-IRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHh-cCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 47999999999999999999999 567999999999999999999998 999999999999999999999999999875
Q ss_pred hHHHHHHhhhcCCCcEEEEEEEEEEc-CeEEEEEC-CEEEEEeCcccCCc
Q 021034 175 ELAWERCRQLQSEDVVVKGKVVGANK-GGVVAEVE-GLRGFVPFSQISSK 222 (318)
Q Consensus 175 ~~~~~~~~~~~~~G~iv~g~V~~v~~-~G~~V~i~-gl~gfip~s~ls~~ 222 (318)
.+|..+.+.++.|+.++|+|..+.+ +| ++++ |++|++|.+++++.
T Consensus 92 -~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~ 138 (182)
T 1kl9_A 92 -EEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFD 138 (182)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHH
T ss_pred -ChHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchh
Confidence 5899999889999999999999987 99 6775 99999999987653
No 4
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.68 E-value=2.9e-19 Score=152.81 Aligned_cols=116 Identities=16% Similarity=0.273 Sum_probs=97.3
Q ss_pred CCCcEEEEEEEEEEcCeEEEEE---CCEEEEEeCcccCCc--CCcchh--cCCeEeEEEEEEecccCeEeeehhhhhhhh
Q 021034 186 SEDVVVKGKVVGANKGGVVAEV---EGLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i---~gl~gfip~s~ls~~--~~~~~~--vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~ 258 (318)
+.|+++.|+|++++++|+||++ +|++||||.|++++. .++.++ +||.|+|+|+++|+++++|.||+|+...++
T Consensus 14 ~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~p 93 (182)
T 1kl9_A 14 EVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPEE 93 (182)
T ss_dssp CTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcCh
Confidence 6899999999999999999999 589999999999976 445554 799999999999999999999999987665
Q ss_pred H----hhcccCeEEEEEEEEEEc-ceEEEEEC-CeEEEEecCCcCccc-ccC
Q 021034 259 Q----AQLGIGSVVIGTVQSLKP-YGAFIDIG-GINGLLHVSQISHDR-VAD 303 (318)
Q Consensus 259 ~----~~l~~G~~v~G~V~~i~~-~G~fV~i~-gv~Glv~~s~ls~~~-~~~ 303 (318)
+ +.++.|+.++|.|+++++ || |++. |+.||+|.++++|.+ ..+
T Consensus 94 ~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~~~~~ 143 (182)
T 1kl9_A 94 AIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDDKYKR 143 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHHHHTC
T ss_pred HHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhhhcCC
Confidence 4 678899999999999998 99 7887 999999999888753 344
No 5
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.61 E-value=1.1e-16 Score=136.22 Aligned_cols=104 Identities=16% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCCCEEEEEEEEEECCeEEEEe--CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhh
Q 021034 98 ELGTKVKGTVFCTDNRGALVDI--TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~~G~~V~i--~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~ 175 (318)
++|+++.|+|+++.++|+||++ +++.+|++|++|+++.++.++.+. +++||.+.|+|+++|.+++++.||+|....
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~-~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~- 91 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKL-IRVGKNDVAVVLRVDKEKGYIDLSKRRVSS- 91 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCC-CCTTSEEEEEEEEEETTTTEEEEESTTCCH-
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHc-CCCCCEEEEEEEEEECCCCeEEEEEEecCc-
Confidence 5899999999999999999999 367999999999999999999998 999999999999999999999999999876
Q ss_pred HHHHHHhhhcCCCcEEEEEEEEEE-cCeE
Q 021034 176 LAWERCRQLQSEDVVVKGKVVGAN-KGGV 203 (318)
Q Consensus 176 ~~~~~~~~~~~~G~iv~g~V~~v~-~~G~ 203 (318)
.+|..+.+.++.|+.++|+|.+++ ++|+
T Consensus 92 ~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 92 EDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 699999998999999999999987 6776
No 6
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.52 E-value=1.2e-15 Score=140.43 Aligned_cols=109 Identities=16% Similarity=0.132 Sum_probs=100.0
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC--CCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~--~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.+++|+++.|+|.++.++|+||+++ ++.+||+|++++++.++.++.+. +++||.+.|+|+++|++++++.||+|...
T Consensus 10 ~~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~-~kvGd~V~VkVl~vD~~~~rI~LSlK~~~ 88 (308)
T 1q8k_A 10 FPEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKL-IRIGRNECVKVIRVDKEKGYIDLSKRRVS 88 (308)
T ss_dssp CCSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTT-CSSSCEEEEEEEEEETTTTEEEEECSSCC
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHh-cCCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 4569999999999999999999997 68999999999999999999988 99999999999999999999999999987
Q ss_pred hhHHHHHHhhhcCCCcEEEEEEEEEEc-CeEEEE
Q 021034 174 YELAWERCRQLQSEDVVVKGKVVGANK-GGVVAE 206 (318)
Q Consensus 174 ~~~~~~~~~~~~~~G~iv~g~V~~v~~-~G~~V~ 206 (318)
. .+|..+.+.++.|+++.|+|+++.+ +|+|++
T Consensus 89 ~-~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 89 P-EEAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred c-ChHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 4 6999988888899999999999987 598653
No 7
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.52 E-value=2.9e-14 Score=112.10 Aligned_cols=86 Identities=21% Similarity=0.314 Sum_probs=78.2
Q ss_pred HHHhhhccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEE
Q 021034 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVL 167 (318)
Q Consensus 88 ~~~~~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~l 167 (318)
++|+.+..++++|+++.|+|.++.++|+||+++++.+||||.+|+++.+..++.+. +++||.+.|+|+++|.+++++.|
T Consensus 20 ~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~-~~vGd~V~v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 20 HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLV-LSVGDEVEAKFTGVDRKNRAISL 98 (109)
T ss_dssp -CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGS-CCTTCEEEEEEEEEETTTTEEEE
T ss_pred CHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhc-cCCCCEEEEEEEEEECCCCEEEE
Confidence 46777777889999999999999999999999888999999999999888888887 99999999999999998889999
Q ss_pred Eeeehhh
Q 021034 168 SLRMIQY 174 (318)
Q Consensus 168 S~k~~~~ 174 (318)
|++....
T Consensus 99 S~k~~~~ 105 (109)
T 2khj_A 99 SVRAKDE 105 (109)
T ss_dssp ETTSSSS
T ss_pred EEeecCh
Confidence 9998654
No 8
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.50 E-value=3.1e-14 Score=113.00 Aligned_cols=93 Identities=19% Similarity=0.230 Sum_probs=79.7
Q ss_pred HHHhhhccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc-cccCccccCcCCCCEEEEEEEEEeCCCCeEE
Q 021034 88 SALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLV 166 (318)
Q Consensus 88 ~~~~~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~-~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~ 166 (318)
..|+....++++|+++.|+|.++.++|+||+++++.+||+|.+|+++. +..++.+. +++||.+.|+|+++|.+++++.
T Consensus 19 ~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~-~~vGd~V~vkV~~vd~~~~rI~ 97 (115)
T 2khi_A 19 SHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKV-VNVGDVVEVMVLDIDEERRRIS 97 (115)
T ss_dssp --CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTT-CCTTCEEEEEEEEEETTTTEEE
T ss_pred CCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccE-ECCCCEEEEEEEEEECCCCEEE
Confidence 356665568899999999999999999999998889999999999873 66777776 9999999999999999899999
Q ss_pred EEeeehhhhHHHHHHh
Q 021034 167 LSLRMIQYELAWERCR 182 (318)
Q Consensus 167 lS~k~~~~~~~~~~~~ 182 (318)
||+|.... .+|+.+.
T Consensus 98 lslk~~~~-~p~~~~~ 112 (115)
T 2khi_A 98 LGLKQCKA-NPWQQFA 112 (115)
T ss_dssp ECCCCCCS-SCCCCCC
T ss_pred EEEEecCc-CHHHHHH
Confidence 99999765 4776553
No 9
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.47 E-value=4.9e-13 Score=99.15 Aligned_cols=74 Identities=15% Similarity=0.194 Sum_probs=66.8
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
++++|+++.|+|.++.++|+||+++++.+|++|.+|+++.+. +. +++||.+.|+|+++|.+++++.||+++...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~----~~-~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL----EN-LNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG----GG-CCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc----ee-eCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 578999999999999999999999888999999999987654 34 899999999999999988999999998753
No 10
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.46 E-value=8.9e-15 Score=124.35 Aligned_cols=94 Identities=18% Similarity=0.292 Sum_probs=79.4
Q ss_pred CCcEEEEEEEEEEcCeEEEEE---CCEEEEEeCcccCCc--CCcchh--cCCeEeEEEEEEecccCeEeeehhhhhhhhH
Q 021034 187 EDVVVKGKVVGANKGGVVAEV---EGLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQ 259 (318)
Q Consensus 187 ~G~iv~g~V~~v~~~G~~V~i---~gl~gfip~s~ls~~--~~~~~~--vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~ 259 (318)
.|+++.|+|+++.++|+||++ +|++||||.|++++. .++.++ +||.|.|+|+++|++++++.||+|+...+++
T Consensus 15 ~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~~~ 94 (175)
T 2a19_A 15 IDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDI 94 (175)
T ss_dssp TTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHHHH
T ss_pred CCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcChH
Confidence 899999999999999999999 589999999999976 345554 7999999999999999999999999876654
Q ss_pred ----hhcccCeEEEEEEEEEE-cceE
Q 021034 260 ----AQLGIGSVVIGTVQSLK-PYGA 280 (318)
Q Consensus 260 ----~~l~~G~~v~G~V~~i~-~~G~ 280 (318)
+.++.|+.+.|+|++++ ++|+
T Consensus 95 ~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 95 IKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccCCCcceEEEEEchhhcCC
Confidence 67889999999999998 6886
No 11
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.46 E-value=4e-13 Score=108.83 Aligned_cols=78 Identities=21% Similarity=0.302 Sum_probs=73.4
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
++++|+++.|+|.++.++|+||++.++.+||||++|+++.++.++.+. +++||.|.|+|+++|.+++++.||++....
T Consensus 4 ~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~-~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 4 KFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEH-LSVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGT-CCTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCcccc-CCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 678999999999999999999999878999999999999988888887 999999999999999989999999998765
No 12
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.45 E-value=1.6e-13 Score=103.65 Aligned_cols=76 Identities=11% Similarity=0.183 Sum_probs=69.8
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC--CCeEEEEeCc-ccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeeh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQ-EACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~--~~~~g~lp~s-Els~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~ 172 (318)
..++|+++.|+|+ +.++|+||++. ++.+|++|+| |+++.+..++++. + +||+++|+|+++|.+++++.||+|..
T Consensus 8 ~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~-~-~Gd~V~VkV~~vd~~~~kI~lslk~~ 84 (88)
T 1luz_A 8 LPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDK-L-VGKTVKVKVIRVDYTKGYIDVNYKRM 84 (88)
T ss_dssp CCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHH-H-TTCEEEEEEEEEETTTTEEEEEEEEE
T ss_pred CCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHE-e-CCCEEEEEEEEEECCCCEEEEEEeec
Confidence 5689999999999 99999999995 3699999999 9999888888887 8 99999999999999999999999986
Q ss_pred hh
Q 021034 173 QY 174 (318)
Q Consensus 173 ~~ 174 (318)
..
T Consensus 85 ~~ 86 (88)
T 1luz_A 85 CR 86 (88)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 13
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.43 E-value=2.7e-14 Score=129.55 Aligned_cols=109 Identities=20% Similarity=0.157 Sum_probs=98.0
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC--CCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~--~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.+++|+++.|+|.++.++|+||+++ ++.+||||++|+++.++.++.+. +++||.+.|+|+++|.+++++.||+|...
T Consensus 8 ~p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~-~kvGd~V~vkVi~vD~~~~~I~LSlk~~~ 86 (275)
T 3aev_A 8 YPEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDY-LKEGQKVVAKVIRVDPRKGHIDLSLRRVT 86 (275)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGT-CCTTCEEEEEEEEEETTTTEEEEESTTCC
T ss_pred CCCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhc-cCCCCEEEEEEEEEECCCCEEEEEEeecC
Confidence 3468999999999999999999997 57999999999999999999888 99999999999999999999999999986
Q ss_pred hhHHHHHHhhhcCCCcEEEEEEEEEE-cCeEEEE
Q 021034 174 YELAWERCRQLQSEDVVVKGKVVGAN-KGGVVAE 206 (318)
Q Consensus 174 ~~~~~~~~~~~~~~G~iv~g~V~~v~-~~G~~V~ 206 (318)
. .+|....+.+..|+.+.|+|..+. ++|+.++
T Consensus 87 ~-~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 87 Q-QQRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred c-chhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 5 588888888889999999999987 7787443
No 14
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.39 E-value=5.1e-13 Score=104.93 Aligned_cols=88 Identities=25% Similarity=0.368 Sum_probs=71.0
Q ss_pred EEeeehhhhHHHHHHhhhcCCCcEEEEEEEEEEcCeEEEEEC-CEEEEEeCcccCCc--CCcch-h-cCCeEeEEEEEEe
Q 021034 167 LSLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSK--STAEE-L-LGKDLPLKFVEVD 241 (318)
Q Consensus 167 lS~k~~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~-gl~gfip~s~ls~~--~~~~~-~-vGq~v~~kVl~vd 241 (318)
-|+|+... .+|+.+...++.|++++|+|+++.++|+||+++ ++.||||.+++++. .++.+ + +||.|.|+|+++|
T Consensus 12 ~~iKq~~~-~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd 90 (109)
T 2khj_A 12 SGLVPRGS-HMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVD 90 (109)
T ss_dssp ----------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEE
T ss_pred cchhhccc-CHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEE
Confidence 36666665 589998888889999999999999999999997 99999999999875 34444 4 7999999999999
Q ss_pred cccCeEeeehhhhh
Q 021034 242 EEQSRLVLSNRKAM 255 (318)
Q Consensus 242 ~~~~~i~lS~K~~l 255 (318)
++++++.||+|+..
T Consensus 91 ~~~~ki~LS~k~~~ 104 (109)
T 2khj_A 91 RKNRAISLSVRAKD 104 (109)
T ss_dssp TTTTEEEEETTSSS
T ss_pred CCCCEEEEEEeecC
Confidence 99899999999764
No 15
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.38 E-value=5.4e-13 Score=105.80 Aligned_cols=94 Identities=21% Similarity=0.351 Sum_probs=73.3
Q ss_pred EeeehhhhHHHHHHhhhcCCCcEEEEEEEEEEcCeEEEEEC-CEEEEEeCcccCCc---CCcch-h-cCCeEeEEEEEEe
Q 021034 168 SLRMIQYELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSK---STAEE-L-LGKDLPLKFVEVD 241 (318)
Q Consensus 168 S~k~~~~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~-gl~gfip~s~ls~~---~~~~~-~-vGq~v~~kVl~vd 241 (318)
|+|+... .+|+.+...++.|+++.|+|+++.++|+||+++ |+.||+|.+++++. .++.+ + +||.|+|+|+++|
T Consensus 12 ~~k~~~~-~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 12 SGLVPRG-SHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp ----------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred chhhccc-CCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 5565554 488877666789999999999999999999997 89999999999873 23443 3 7999999999999
Q ss_pred cccCeEeeehhhhhhhhHhhc
Q 021034 242 EEQSRLVLSNRKAMADSQAQL 262 (318)
Q Consensus 242 ~~~~~i~lS~K~~l~~~~~~l 262 (318)
.+++++.||+|+...++++.+
T Consensus 91 ~~~~rI~lslk~~~~~p~~~~ 111 (115)
T 2khi_A 91 EERRRISLGLKQCKANPWQQF 111 (115)
T ss_dssp TTTTEEEECCCCCCSSCCCCC
T ss_pred CCCCEEEEEEEecCcCHHHHH
Confidence 999999999999877766543
No 16
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=6.8e-13 Score=105.80 Aligned_cols=90 Identities=17% Similarity=0.188 Sum_probs=77.3
Q ss_pred HhhhccCCCCCCEEEEEEEEEECCeEEEEeCC-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCC--CeEE
Q 021034 90 LEKYDFNSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLV 166 (318)
Q Consensus 90 ~~~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~--~~i~ 166 (318)
|+.+...+++|+++.|+|.++.++|+||++.+ +.+||||++++++.++.++.+. +++||.|.|+|+++|.++ +++.
T Consensus 13 ~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~-~~~Gd~V~VkV~~vd~~~~~~~i~ 91 (119)
T 2cqo_A 13 PETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEI-VDVGDKVWVKLIGREMKNDRIKVS 91 (119)
T ss_dssp CCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHH-CCTTCEEEEEEEEEEECSSCEEEE
T ss_pred hhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhc-CCCCCEEEEEEEEEeccccCceEE
Confidence 44445578899999999999999999999965 4799999999999888888887 999999999999999764 6999
Q ss_pred EEeeehhhhHHHHHH
Q 021034 167 LSLRMIQYELAWERC 181 (318)
Q Consensus 167 lS~k~~~~~~~~~~~ 181 (318)
||+|.... ..|+.+
T Consensus 92 LSlk~~~~-~~~~~~ 105 (119)
T 2cqo_A 92 LSMKVVNQ-GTGKDL 105 (119)
T ss_dssp EESTTBCS-SSCCBS
T ss_pred EEEeeccc-CCcccc
Confidence 99999865 356544
No 17
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.37 E-value=4.5e-14 Score=129.85 Aligned_cols=98 Identities=18% Similarity=0.306 Sum_probs=87.0
Q ss_pred CCCcEEEEEEEEEEcCeEEEEEC---CEEEEEeCcccCCc--CCcchh--cCCeEeEEEEEEecccCeEeeehhhhhhhh
Q 021034 186 SEDVVVKGKVVGANKGGVVAEVE---GLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i~---gl~gfip~s~ls~~--~~~~~~--vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~ 258 (318)
+.|+++.|+|+++.++|+||+++ |++||+|.|++++. .++.++ +||.|.|+|+++|++++++.||+|+...++
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~p 91 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSRRRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPEE 91 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSCSSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHHH
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCcccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccCh
Confidence 48999999999999999999994 89999999999976 345554 799999999999999999999999887665
Q ss_pred H----hhcccCeEEEEEEEEEEc-ceEEEE
Q 021034 259 Q----AQLGIGSVVIGTVQSLKP-YGAFID 283 (318)
Q Consensus 259 ~----~~l~~G~~v~G~V~~i~~-~G~fV~ 283 (318)
+ +.++.|+++.|+|.++.+ ||+|++
T Consensus 92 ~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 92 AIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred HHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 4 578899999999999999 699864
No 18
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=2.7e-12 Score=99.79 Aligned_cols=76 Identities=13% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCC---CeEEEEeCccc-ccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeee
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITA---KSSAYLPTQEA-CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~---~~~g~lp~sEl-s~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~ 171 (318)
++++|+++.|+|.++.++|+||++++ +.+||||++|+ ++.++.++.+. +++||.+.|+|+++|. +++.||+|.
T Consensus 9 ~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~-~~~Gd~V~VkV~~vd~--~~i~LSlk~ 85 (103)
T 2eqs_A 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADV-VSKGQRVKVKVLSFTG--TKTSLSMKD 85 (103)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHH-CCTTCEEEEEEEEEET--TEEEEESTT
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccE-eCCCCEEEEEEEEEEC--CeeEEEEee
Confidence 67899999999999999999999985 79999999999 66677788887 9999999999999996 699999998
Q ss_pred hhh
Q 021034 172 IQY 174 (318)
Q Consensus 172 ~~~ 174 (318)
...
T Consensus 86 ~~~ 88 (103)
T 2eqs_A 86 VDQ 88 (103)
T ss_dssp BCT
T ss_pred ccc
Confidence 765
No 19
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.32 E-value=2.5e-12 Score=104.13 Aligned_cols=59 Identities=39% Similarity=0.708 Sum_probs=56.2
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++++|+++.|+|++|++||+||+|. |+.||||+|+++|.++.++.+.|++||.|+|+|
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV 62 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTHGFVKDINEHLSVGDEVQVKV 62 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEE
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCcccccCccccCCCCCEEEEEE
Confidence 36789999999999999999999997 999999999999999999999999999999986
No 20
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.31 E-value=9.1e-12 Score=92.22 Aligned_cols=71 Identities=18% Similarity=0.259 Sum_probs=62.7
Q ss_pred cCCCcEEEEEEEEEEcCeEEEEEC-CEEEEEeCcccCCcCCcchh-cCCeEeEEEEEEecccCeEeeehhhhhh
Q 021034 185 QSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSKSTAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMA 256 (318)
Q Consensus 185 ~~~G~iv~g~V~~v~~~G~~V~i~-gl~gfip~s~ls~~~~~~~~-vGq~v~~kVl~vd~~~~~i~lS~K~~l~ 256 (318)
++.|+++.|+|+++.++|+||+++ ++.||+|.|++++... +.+ +||.|+|+|+++|++++++.||+|+...
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~-~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRL-ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCG-GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccc-eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 368999999999999999999997 9999999999987532 344 7999999999999999999999998653
No 21
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=4.9e-12 Score=98.26 Aligned_cols=59 Identities=32% Similarity=0.631 Sum_probs=54.7
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC----CeEEEEecCCc-CcccccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG----GINGLLHVSQI-SHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~----gv~Glv~~s~l-s~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++++|+++.|+|++|++||+||+++ ++.||||+|++ ++.++.++.+.|++||.|+|+|
T Consensus 8 ~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV 71 (103)
T 2eqs_A 8 EEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKV 71 (103)
T ss_dssp SSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEE
T ss_pred ccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEE
Confidence 46789999999999999999999998 69999999999 6778889999999999999986
No 22
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.27 E-value=6.9e-13 Score=120.35 Aligned_cols=98 Identities=17% Similarity=0.264 Sum_probs=86.0
Q ss_pred CCCcEEEEEEEEEEcCeEEEEEC---CEEEEEeCcccCCc--CCcchh--cCCeEeEEEEEEecccCeEeeehhhhhhhh
Q 021034 186 SEDVVVKGKVVGANKGGVVAEVE---GLRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQSRLVLSNRKAMADS 258 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i~---gl~gfip~s~ls~~--~~~~~~--vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~ 258 (318)
+.|+++.|+|+++.++|+||+++ |+.||||.|++++. .++.+. +||.|.|+|+++|++++++.||+|+...++
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~~ 89 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQQ 89 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHHH
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcch
Confidence 48999999999999999999995 89999999999976 345554 799999999999999999999999876554
Q ss_pred H----hhcccCeEEEEEEEEEE-cceEEEE
Q 021034 259 Q----AQLGIGSVVIGTVQSLK-PYGAFID 283 (318)
Q Consensus 259 ~----~~l~~G~~v~G~V~~i~-~~G~fV~ 283 (318)
+ +.++.|+.+.|.|+++. ++|++++
T Consensus 90 ~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 90 RKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 3 67889999999999999 8998654
No 23
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.25 E-value=7.7e-12 Score=94.32 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=61.2
Q ss_pred CCCcEEEEEEEEEEcCeEEEEEC---CEEEEEeCc-ccCCc--CCcchh-cCCeEeEEEEEEecccCeEeeehhhhhh
Q 021034 186 SEDVVVKGKVVGANKGGVVAEVE---GLRGFVPFS-QISSK--STAEEL-LGKDLPLKFVEVDEEQSRLVLSNRKAMA 256 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i~---gl~gfip~s-~ls~~--~~~~~~-vGq~v~~kVl~vd~~~~~i~lS~K~~l~ 256 (318)
+.|++++|+|+ ++++|+||+++ |++|++|.| ++++. .+++++ +||+|+++|+++|++++++.||+|+...
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~kI~lslk~~~~ 86 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKLVGKTVKVKVIRVDYTKGYIDVNYKRMCR 86 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECS
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEeCCCEEEEEEEEEECCCCEEEEEEeecCC
Confidence 68999999999 99999999994 799999999 99965 233333 8999999999999999999999997643
No 24
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.25 E-value=2e-12 Score=116.91 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=89.4
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC--CCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT--AKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~--~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.+++|+++.|+|.++.++|+||+++ ++.+||||.+|+++.++.++.+. +++||.+.|+|+++|.+++++.||+|...
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~-~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDV-LKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHH-SCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHh-CcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 6789999999999999999999996 78999999999999999999888 99999999999999988999999999987
Q ss_pred hhHHHHHHhhhcCCCcEEEEEEEEEE
Q 021034 174 YELAWERCRQLQSEDVVVKGKVVGAN 199 (318)
Q Consensus 174 ~~~~~~~~~~~~~~G~iv~g~V~~v~ 199 (318)
. .+|..+.+.++.|+.+.+.|..+.
T Consensus 87 ~-~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 87 D-DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp T-THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hhHHHHHHhccccCccceeeeehh
Confidence 5 588887777777765666555543
No 25
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=3.9e-12 Score=101.40 Aligned_cols=88 Identities=18% Similarity=0.259 Sum_probs=72.4
Q ss_pred HHHHHhhhcCCCcEEEEEEEEEEcCeEEEEECC--EEEEEeCcccCCc--CCcchh--cCCeEeEEEEEEeccc--CeEe
Q 021034 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEVEG--LRGFVPFSQISSK--STAEEL--LGKDLPLKFVEVDEEQ--SRLV 248 (318)
Q Consensus 177 ~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~g--l~gfip~s~ls~~--~~~~~~--vGq~v~~kVl~vd~~~--~~i~ 248 (318)
.|+.+....+.|+++.|+|+++.++|+||++++ .+||||.+++++. .++.+. +||.|.|+|+++|+++ +++.
T Consensus 12 ~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~~~i~ 91 (119)
T 2cqo_A 12 RPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVS 91 (119)
T ss_dssp CCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCSSCCSCHHHHCCTTCEEEEEEEEEEECSSCEEEE
T ss_pred chhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCcccccChhhcCCCCCEEEEEEEEEeccccCceEE
Confidence 455565667799999999999999999999975 5999999999976 344443 7999999999999864 6999
Q ss_pred eehhhhhhhhHhhccc
Q 021034 249 LSNRKAMADSQAQLGI 264 (318)
Q Consensus 249 lS~K~~l~~~~~~l~~ 264 (318)
||+|+...+.++++.+
T Consensus 92 LSlk~~~~~~~~~~~~ 107 (119)
T 2cqo_A 92 LSMKVVNQGTGKDLDP 107 (119)
T ss_dssp EESTTBCSSSCCBSCT
T ss_pred EEEeecccCCccccCc
Confidence 9999987766655544
No 26
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=99.24 E-value=3.7e-11 Score=127.53 Aligned_cols=117 Identities=12% Similarity=-0.004 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHh-hhccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc
Q 021034 57 REELNQLFEEAYERCRTAPMEGVSFTLEEFHSALE-KYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135 (318)
Q Consensus 57 ~~~~~~~i~e~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~ 135 (318)
+..|+.|++|.....++.......++.++.-.++. ....++++|++++|+|.++.++|+||+++.+.+|++|++++++.
T Consensus 859 ~~TL~dI~~EL~~P~rD~R~~f~~~~~~e~~~mltget~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~ 938 (1219)
T 3psi_A 859 LNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGA 938 (1219)
T ss_dssp HHHHHHHHHHHHSSSCCCSBCCCCBCHHHHHHHHTCCCTTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSST
T ss_pred cchHHHHHHHHhccCCCCCcccCCCCHHHHHHhhccCcHhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCC
Confidence 45677788887777777777777777776555553 23358999999999999999999999998889999999999998
Q ss_pred c-ccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 136 K-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 136 ~-~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
+ +.+|.+. +++||.|+|+|+++|.+++++.||+|....
T Consensus 939 ~~v~~p~~v-~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl 977 (1219)
T 3psi_A 939 QLRRPANEI-YEIGKTYPAKVIYIDYANITAEVSLLDHDV 977 (1219)
T ss_dssp TSCSCSTTT-SCTTCEEEEEEEEEEGGGTEEEEECCHHHH
T ss_pred cccCCHHHc-CCCCCEEEEEEEEEECCCCEEEEEecHHHh
Confidence 8 7889888 999999999999999999999999997765
No 27
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.13 E-value=9.8e-11 Score=93.25 Aligned_cols=78 Identities=22% Similarity=0.244 Sum_probs=66.6
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC-CCeEEEEeCcccc-cccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT-AKSSAYLPTQEAC-IHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~-~~~~g~lp~sEls-~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
++++|+++.|+|.++.++|+||+++ ++..|++|.+++. +....++.+. +++||.++|+|+++|.+++++.||+++..
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~i~Lslk~~~ 96 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAK-LKVGQYLNCIVEKVKGNGGVVSLSVGHSE 96 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCC-CCTTCEEEEEEEECCTTSCEEEEECCCCC
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCE-eCCCCEEEEEEEEEeCCCCEEEEEEchhh
Confidence 7899999999999999999999998 5688888887753 2233456666 99999999999999998899999999875
Q ss_pred h
Q 021034 174 Y 174 (318)
Q Consensus 174 ~ 174 (318)
.
T Consensus 97 l 97 (119)
T 1wi5_A 97 V 97 (119)
T ss_dssp S
T ss_pred c
Confidence 4
No 28
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=99.13 E-value=1.8e-11 Score=128.13 Aligned_cols=121 Identities=12% Similarity=-0.001 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhh-hccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc
Q 021034 57 REELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEK-YDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH 135 (318)
Q Consensus 57 ~~~~~~~i~e~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~ 135 (318)
+..|+.|++|.....++.......++.++.-.++.- ...++++|++++|+|.++.++|+||+++.+.+|++|++++++.
T Consensus 862 ~~TL~dI~~EL~~P~~D~R~~f~~~~~~e~~~~LTget~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~ 941 (1030)
T 3psf_A 862 LNNLNTIVLELLDGFEELRNDFHPLQGDEIFQSLTGESEKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGA 941 (1030)
T ss_dssp HHHHHHHHHHHHSTTCCCSCCCCCCCHHHHHHHHHCCC------------------------------------------
T ss_pred cchHHHHHHHHhccCCCCCcccCccchhhhhhhhccccHHHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCC
Confidence 457888888888888887777777777766556542 3358899999999999999999999998889999999999998
Q ss_pred c-ccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHHH
Q 021034 136 K-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAW 178 (318)
Q Consensus 136 ~-~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~~ 178 (318)
+ +.+|.+. +++||.|+|+|+++|.+++++.||+|.......|
T Consensus 942 ~~v~~~~~v-~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl~~~~ 984 (1030)
T 3psf_A 942 QLRRPANEI-YEIGKTYPAKVIYIDYANITAEVSLLDHDVKQQY 984 (1030)
T ss_dssp --------------------------------------------
T ss_pred cccCCHHHc-CCCCCEEEEEEEEEECCCCEEEEEechHHhcccc
Confidence 7 7889888 9999999999999999999999999987765444
No 29
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=99.12 E-value=1.5e-10 Score=107.54 Aligned_cols=123 Identities=20% Similarity=0.187 Sum_probs=91.8
Q ss_pred hccCCceeEEEEEEeccchhHHHHHHHHHHH-HHHHhhcCCCCCCCCCHHHHHHHHhhhccCCCCCCEEEEEEEEEECCe
Q 021034 36 NSRKNKTIVSAVAISNAETREREELNQLFEE-AYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRG 114 (318)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~e-~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~G~iv~G~V~~i~~~G 114 (318)
.+..|..+...+...+.+ |.- -.+.+. .++.+++.+ ++.++++| ..+.|++++|+|.++.++|
T Consensus 86 ~~~vGd~ie~~I~~~dfg---R~a-a~~aKqvi~qkireae----------re~i~~e~--~~~~GeIV~G~V~ri~~~~ 149 (344)
T 1hh2_P 86 LAEVGSIVKKELNVKNFG---RIA-AQTAKQVLIQRIRELE----------KEKQFEKY--SELKGTVTTAEVIRVMGEW 149 (344)
T ss_dssp TCCTTCEEEEECCCCCSS---SCS-GGGHHHHHHHHHHHHT----------TCCSSCCT--TCCTTCEEEEEEEEECSSE
T ss_pred cccCCCEEEEEEccccCc---cHH-HHHHHHHHHHHHHHHH----------HHHHHHHH--hhcCCCEEEEEEEEEecCc
Confidence 578999999988776654 321 122222 223444421 12455555 3568999999999999999
Q ss_pred EEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCC--CeEEEEeeehhhhHHHHHHh
Q 021034 115 ALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLVLSLRMIQYELAWERCR 182 (318)
Q Consensus 115 ~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~--~~i~lS~k~~~~~~~~~~~~ 182 (318)
+||++| +.+|+||.+|++ |.+. +++||+++|+|++++.++ .++.||++.+.....|.+++
T Consensus 150 v~VDlG-k~EgiLp~sE~i------p~E~-~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~LfelE 211 (344)
T 1hh2_P 150 ADIRIG-KLETRLPKKEWI------PGEE-IKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLE 211 (344)
T ss_dssp EEEEET-TEEEEEEGGGSC------TTCC-CCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHH
T ss_pred EEEEeC-CeEEEEeHHHcC------CCcC-CCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHHHhh
Confidence 999998 799999999996 4455 999999999999998654 48999999998887887764
No 30
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=99.11 E-value=6e-12 Score=127.34 Aligned_cols=133 Identities=11% Similarity=0.152 Sum_probs=2.8
Q ss_pred eEEEEEEeccchhHHHHHHHHHHHHHHHhhcCCCCCCCCC---HHHHHH---HHhhhccCCCCCCEEEEEEEEEECCeEE
Q 021034 43 IVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFT---LEEFHS---ALEKYDFNSELGTKVKGTVFCTDNRGAL 116 (318)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~e~~~~~~~~~~~~~~~s---~~~~~~---~~~~~~~~~~~G~iv~G~V~~i~~~G~~ 116 (318)
-|-|-++...+ +.|+.+++++=..++-.+.+.+... .+..+. .++.+..++++|+++.|+|+++.++|+|
T Consensus 579 ~ki~~vig~gg----~~i~~i~~~tg~~idi~ddG~v~I~~~~~~~~~~A~~~i~~i~~~~~vG~v~~G~V~~I~~fGaF 654 (726)
T 4aid_A 579 DKIREVIGSGG----KVIREIVATTGAKVDINDDGVVKVSASDGAKIKAAIDWIKSITDEAEVGKIYDGKVVKVVDFGAF 654 (726)
T ss_dssp ---------------------------------------CCSCHHHHHHHHHC---------------------------
T ss_pred HHHHhhcCCCc----hhHHHHHHHHCCceeEECCceEEEEeCCHHHHHHHHHHHHHHhhhhcCCcEEEEEEEEEeccEEE
Confidence 34455666444 6899999997666665555554333 333333 3455556789999999999999999999
Q ss_pred EEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHHHHHHh
Q 021034 117 VDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCR 182 (318)
Q Consensus 117 V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~~~~~~ 182 (318)
|++.++.+|++|+||+++.++.++++. +++||.|+|+|+++|+ ++++.||+|....+ .++.+.
T Consensus 655 Vel~~g~eGLvHiSels~~rv~~~~d~-~kvGD~V~VkVi~iD~-~grI~LS~K~~~~~-~G~~~~ 717 (726)
T 4aid_A 655 VNFFGAKDGLVHVSQISNERVAKPSDV-LKEGQMVKVKLLGFDD-RGKTKLSMKVVDQE-TGEDLS 717 (726)
T ss_dssp ------------------------------------------------------------------
T ss_pred EEECCCcEEEEEHHHcCcccccCcccc-CCCCCEEEEEEEEECC-CCcEEEEEeecccC-cchhhh
Confidence 999888999999999999999999998 9999999999999997 78999999998763 555553
No 31
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=99.03 E-value=1.4e-09 Score=93.34 Aligned_cols=78 Identities=12% Similarity=0.138 Sum_probs=68.1
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCccccccccc-----------CccccCcCCCCEEEEEEEEEeCCCC
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIK-----------HVEEAGIVPGLKEEFVIIGENEADD 163 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~-----------~~~~~~~~~G~~v~v~Vl~vd~~~~ 163 (318)
....+|+++.|+|+++.++|+||++++ .+|++|.+++++.+.. ++.+. +++||.|.|+|+++|..++
T Consensus 77 ~~~~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~ 154 (187)
T 1go3_E 77 YIPEMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMDDYVSYDPKREAIIGKETGKV-LEIGDYVRARIVAISLKAE 154 (187)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECCC--CEEETTTCCE-ECTTCEEEEEEEEEECCC-
T ss_pred EccCCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCCCcceECCccceEEecCCCeE-EcCCCEEEEEEEEEEcccC
Confidence 467899999999999999999999975 9999999999876654 56666 9999999999999998654
Q ss_pred -----eEEEEeeehhh
Q 021034 164 -----SLVLSLRMIQY 174 (318)
Q Consensus 164 -----~i~lS~k~~~~ 174 (318)
++.||++.+..
T Consensus 155 ~p~~~~I~lS~k~~~L 170 (187)
T 1go3_E 155 RKRGSKIALTMRQPYL 170 (187)
T ss_dssp ----CEEEEECCSTTC
T ss_pred CCCccEEEEEEcCCCC
Confidence 99999998754
No 32
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=99.01 E-value=3.2e-11 Score=122.47 Aligned_cols=121 Identities=14% Similarity=0.148 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCHHHHHH------HHhhhccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcc
Q 021034 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHS------ALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQE 131 (318)
Q Consensus 58 ~~~~~~i~e~~~~~~~~~~~~~~~s~~~~~~------~~~~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sE 131 (318)
+.++.++++.=..++-.+.+.+..+..+... .++.+..++++|++++|+|.++.++|+||++.++.+||+|+||
T Consensus 580 k~I~~I~~~~G~~IdI~~dg~v~I~~~~~~~~~~a~~~i~~i~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSe 659 (723)
T 3cdi_A 580 SVIRALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQ 659 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeeehhhCceEEecCCccEEEecCCHHHHHHHHHHHHHHhhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHH
Confidence 5778888874333443334445444443332 3455556789999999999999999999999888999999999
Q ss_pred cccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHHHHHH
Q 021034 132 ACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERC 181 (318)
Q Consensus 132 ls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~~~~~ 181 (318)
+++.++.++++. +++||.|+|+|+++|. ++++.||+|.... ..|..+
T Consensus 660 l~~~~v~~~~~~-~~vGd~V~VkVi~vd~-~grI~LS~k~~~~-~~g~~~ 706 (723)
T 3cdi_A 660 IADKRVEKVTDY-LQMGQEVPVKVLEVDR-QGRIRLSIKEATE-QSQPAA 706 (723)
T ss_dssp --------------------------------------------------
T ss_pred cCCccccCcccc-cCCCCEEEEEEEEECC-CCcEEEEEEeccC-CCCccc
Confidence 999999999988 9999999999999997 8999999998764 355544
No 33
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.99 E-value=1.4e-10 Score=118.51 Aligned_cols=111 Identities=21% Similarity=0.268 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCCCHHHHHHHHhhhccCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc
Q 021034 58 EELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI 137 (318)
Q Consensus 58 ~~~~~~i~e~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~ 137 (318)
..+..++++.....++...+ |....+.+-.+.. .++++|++++|+|.++.++|+||+++.+.+|++|++++++.++
T Consensus 617 ~tl~rIi~eL~kpg~d~R~~---~~~~~~~~~ve~~-~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v 692 (785)
T 3bzc_A 617 PTVTDILKELDKPGRDPRPE---FKTAEFQEGVESL-KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFV 692 (785)
T ss_dssp HHHHHHHHHHHSTTCCCSCC---CCTTTTCCCCCSS-TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCC
T ss_pred HHHHHHHHHHhccCCChhhh---cccchhhhcccch-hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCcccc
Confidence 35666666665444443222 1111111111222 3688999999999999999999999988999999999999999
Q ss_pred cCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 138 KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 138 ~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.++.+. +++||.|+|+|+++|.+++++.||+|...
T Consensus 693 ~d~~~~-~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 693 KDPYEV-VKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp SCHHHH-CCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred CChhhe-eCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 999888 99999999999999999999999998654
No 34
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.97 E-value=1.4e-09 Score=94.84 Aligned_cols=77 Identities=16% Similarity=0.143 Sum_probs=69.2
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeC--------CCeEEEEeCccccccccc--CccccCcCCCCEEEEEEEEEeCCCCeE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDIT--------AKSSAYLPTQEACIHKIK--HVEEAGIVPGLKEEFVIIGENEADDSL 165 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~--------~~~~g~lp~sEls~~~~~--~~~~~~~~~G~~v~v~Vl~vd~~~~~i 165 (318)
.+++|++|.|+|+++.++|++|+|+ .+.+|+||++|+++.+.. ++.+. |++||.|.++|+++++.++++
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~-l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKS-FRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGT-CCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhh-cCCCCEEEEEEEEEeCCCCeE
Confidence 6789999999999999999999984 357899999999987776 78887 999999999999999877799
Q ss_pred EEEeeehh
Q 021034 166 VLSLRMIQ 173 (318)
Q Consensus 166 ~lS~k~~~ 173 (318)
.||.|...
T Consensus 157 ~LS~k~~~ 164 (209)
T 2nn6_I 157 LLTTAENE 164 (209)
T ss_dssp EEECCSSS
T ss_pred EEEEecCC
Confidence 99998864
No 35
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.96 E-value=2.3e-10 Score=91.07 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=55.6
Q ss_pred eehhhhhhhh---HhhcccCeEEEEEEEEEEcceEEEEEC--CeEEEEecCCc-CcccccCcccccCCCCEEEEEC
Q 021034 249 LSNRKAMADS---QAQLGIGSVVIGTVQSLKPYGAFIDIG--GINGLLHVSQI-SHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 249 lS~K~~l~~~---~~~l~~G~~v~G~V~~i~~~G~fV~i~--gv~Glv~~s~l-s~~~~~~~~~~~~~Gq~V~v~V 318 (318)
+|+++...+. ..++++|+++.|+|++|++||+||+|+ +..||+|.++. +|.+..++.+.|++||.|+|+|
T Consensus 3 ~sl~P~~vn~~~~~~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV 78 (119)
T 1wi5_A 3 SGSSGKNVNRVLSAEALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIV 78 (119)
T ss_dssp CCCCCSCSSCCCCTTTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEE
T ss_pred cccCHHHhhccccHhcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEecccccccccCccCEeCCCCEEEEEE
Confidence 4566655442 468999999999999999999999998 56666665553 3555668899999999999986
No 36
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.96 E-value=9.7e-11 Score=108.88 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=86.0
Q ss_pred cCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHHHHH----HhhhcC--CCcEEEEEEEEEEcCeEEEEECCEEEEEeCcc
Q 021034 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWER----CRQLQS--EDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQ 218 (318)
Q Consensus 145 ~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~~~~----~~~~~~--~G~iv~g~V~~v~~~G~~V~i~gl~gfip~s~ 218 (318)
+.+|+.+++.|...+. ++....+.|+.......+. +.+.+. .|++|+|+|.+++++|++|++|+.+|+||.++
T Consensus 87 ~~vGd~ie~~I~~~df-gR~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~sE 165 (344)
T 1hh2_P 87 AEVGSIVKKELNVKNF-GRIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPKKE 165 (344)
T ss_dssp CCTTCEEEEECCCCCS-SSCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEEGGG
T ss_pred ccCCCEEEEEEccccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeHHH
Confidence 7899999999976553 2333344455443222222 112233 79999999999999999999999999999999
Q ss_pred cCCcCCcchh-cCCeEeEEEEEEecccC--eEeeehhhh-hhhhHhhcccCeEEEEEE
Q 021034 219 ISSKSTAEEL-LGKDLPLKFVEVDEEQS--RLVLSNRKA-MADSQAQLGIGSVVIGTV 272 (318)
Q Consensus 219 ls~~~~~~~~-vGq~v~~kVl~vd~~~~--~i~lS~K~~-l~~~~~~l~~G~~v~G~V 272 (318)
++.+. .+ +|+++++.|++++.+++ .+.||++.. +.+.+..+.+.++..|.|
T Consensus 166 ~ip~E---~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~LfelEVPEI~dG~V 220 (344)
T 1hh2_P 166 WIPGE---EIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLMKLEIPEVENGIV 220 (344)
T ss_dssp SCTTC---CCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHHHHHCHHHHHSSE
T ss_pred cCCCc---CCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHHHhhcccceeeeE
Confidence 98432 34 79999999999997654 799999865 233343444444444444
No 37
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.94 E-value=1.2e-09 Score=84.34 Aligned_cols=81 Identities=31% Similarity=0.407 Sum_probs=64.9
Q ss_pred CCcEEEEEEEEEE---cCeEEEEE--CCEEEEEeCcccCCcCCcchhcCCeEeEEEEEEecccCeEeeehhhhhhhhHhh
Q 021034 187 EDVVVKGKVVGAN---KGGVVAEV--EGLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQ 261 (318)
Q Consensus 187 ~G~iv~g~V~~v~---~~G~~V~i--~gl~gfip~s~ls~~~~~~~~vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~~~ 261 (318)
.++.++|+|+..+ .+| |+.- ++.+.|+|.+.+.+..- ....
T Consensus 13 ~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---------------------------------~~~~ 58 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---------------------------------VRGN 58 (101)
T ss_dssp ---CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC---------------------------------CCCC
T ss_pred ccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc---------------------------------cccC
Confidence 5667899999984 457 5554 36999999999986420 1145
Q ss_pred cccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccc
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV 301 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~ 301 (318)
+++|+.|.+.|.++++||+||++. +++||+|+|+++|.++
T Consensus 59 l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~~~ 99 (101)
T 2bh8_A 59 PQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWAQA 99 (101)
T ss_dssp CCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEECCC
T ss_pred CCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccCcC
Confidence 789999999999999999999997 9999999999999875
No 38
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=98.94 E-value=3.4e-10 Score=102.30 Aligned_cols=58 Identities=28% Similarity=0.513 Sum_probs=55.1
Q ss_pred hcccCeEEEEEEEEEEcceEEEEE---CCeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDI---GGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i---~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.+++|+++.|+|+++++||+||++ +|+.||+|.|+++|+++.++.+.|++||.|.|+|
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~~~v~~~~~~~~vGd~V~VkV 68 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSSKWVKNIRDVLKENRKVIVKV 68 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSCSSCCCHHHHSCTTCEEEEEE
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCcccccCHHHhCcCCCEEEEEE
Confidence 567899999999999999999999 4899999999999999999999999999999986
No 39
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.90 E-value=1.9e-09 Score=92.52 Aligned_cols=58 Identities=31% Similarity=0.585 Sum_probs=53.5
Q ss_pred hcccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCccccc-----------CcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVA-----------DIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~~-----------~~~~~~~~Gq~V~v~V 318 (318)
...+|+++.|+|++++++|+||++++++||+|+|++++++.. ++.+.|++||.|+|+|
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~~~eglvhis~l~~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV 146 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLGPLDGLIHVSQIMDDYVSYDPKREAIIGKETGKVLEIGDYVRARI 146 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECCC--CEEETTTCCEECTTCEEEEEE
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEcCccEEEEhHHhCCCcceECCccceEEecCCCeEEcCCCEEEEEE
Confidence 356799999999999999999999999999999999998775 7889999999999986
No 40
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.89 E-value=1.5e-09 Score=115.35 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=56.9
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCccc-ccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR-VADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~-~~~~~~~~~~Gq~V~v~V 318 (318)
+++++|++|.|+|++|++||+||+|+ |++||||+|+++|.+ +.+|.+.|++||.|+|+|
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkV 958 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 958 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEE
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEE
Confidence 68899999999999999999999999 999999999999998 899999999999999987
No 41
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.89 E-value=4.3e-09 Score=89.62 Aligned_cols=71 Identities=24% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCC----------CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITA----------KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSL 165 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~----------~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i 165 (318)
..+ |++|.|+|+++.++|++|++.. +.+|+||++|+++.+..++.+. |++||.|.++|++ +++
T Consensus 55 ~p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~-~~~GD~V~akVi~-----~~i 127 (179)
T 3m7n_A 55 IVK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEA-VGYLDILKARVIG-----DNL 127 (179)
T ss_dssp CCT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGT-CCTTCEEEEEEEE-----TTT
T ss_pred cCC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhc-CCCCCEEEEEEEC-----CeE
Confidence 567 9999999999999999999976 7999999999999888888888 9999999999987 789
Q ss_pred EEEeeehh
Q 021034 166 VLSLRMIQ 173 (318)
Q Consensus 166 ~lS~k~~~ 173 (318)
.||+|...
T Consensus 128 ~LS~k~~~ 135 (179)
T 3m7n_A 128 RLSTKEEE 135 (179)
T ss_dssp EEECCSTT
T ss_pred EEEEecCC
Confidence 99998753
No 42
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.84 E-value=7.2e-09 Score=92.76 Aligned_cols=75 Identities=24% Similarity=0.161 Sum_probs=67.0
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc---cCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeeh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI---KHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~---~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~ 172 (318)
.+++|++|.|+|+++.++|++|++++..+|+||.+|++..+. .++.+. +++||.|.|+|+++++ ++++.||+|..
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~-l~vGD~V~arVi~v~~-~~~i~LS~r~~ 148 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRY-LDVGDYVIARIENFDR-SIDPVLSVKGK 148 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSS-CCTTCEEEEEEEEEET-TEEEEEECCST
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhc-CCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 678999999999999999999999988999999999987665 666666 9999999999999986 46899999764
No 43
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.83 E-value=1.9e-08 Score=85.63 Aligned_cols=78 Identities=17% Similarity=0.234 Sum_probs=65.6
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc-----------cCccccCcCCCCEEEEEEEEEeCC--
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-----------KHVEEAGIVPGLKEEFVIIGENEA-- 161 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~-----------~~~~~~~~~~G~~v~v~Vl~vd~~-- 161 (318)
..+.+|++++|+|++++++|+||+++. .+|++|.+++.+++. ++..+. +++||.|+|+|+++|.+
T Consensus 77 ~~p~~Gev~~G~V~~v~~~G~fv~l~~-~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~-~~~Gd~VrvkV~~v~~~~~ 154 (180)
T 4ayb_E 77 YVPVVQEVVEGEVLQVDNYGVFVNLGP-MDGLVHISQITDDTLKYDNVRGIIFGEKSKKV-IQKGDKVRARVISVASTVT 154 (180)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCSSCEEECSSSCCEEETTTCCC-CCTTCEEEEEEEEECC---
T ss_pred eeccCCCEEEEEEeeeccceEEEEECC-ccceEEeeecCCCccccchhcceEEEeccCeE-ECCCCEEEEEEEEEeCCCC
Confidence 467899999999999999999999975 899999999998765 345555 89999999999999864
Q ss_pred --CCeEEEEeeehhh
Q 021034 162 --DDSLVLSLRMIQY 174 (318)
Q Consensus 162 --~~~i~lS~k~~~~ 174 (318)
..++.+|+|++-.
T Consensus 155 ~~~~rI~ls~k~~gL 169 (180)
T 4ayb_E 155 GRLPRIALTMRQPYL 169 (180)
T ss_dssp ----CEEEECCSTTC
T ss_pred cccCcEEEEcCCCCC
Confidence 3589999998654
No 44
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.82 E-value=1.5e-08 Score=89.53 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=66.7
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc-cccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeeh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~-~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~ 172 (318)
.+++|++|.|+|+++.++|++|++++..+|+||.+|++.. +..+..+. +++||.|.|+|+++++ ++.+.||+|..
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~-l~~GD~V~arVi~v~~-~~~i~LS~r~~ 129 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEV-LDIGDAIIAKVLNIDP-KMKVTLTMKDR 129 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGT-CCTTCEEEEEEEEECT-TCCEEEECCSS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcc-cCCCCEEEEEEEEECC-CCcEEEEEccc
Confidence 5789999999999999999999999889999999999963 55667777 9999999999999986 47899999763
No 45
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.82 E-value=1.3e-10 Score=118.44 Aligned_cols=87 Identities=20% Similarity=0.199 Sum_probs=38.1
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCccc----ccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEee
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA----CIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLR 170 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEl----s~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k 170 (318)
.++++|++++|+|.++.++|+||++.++.+||||+||+ ++.++.++++. +++||.|+|+|+++|+ ++++.||+|
T Consensus 663 ~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~-~~vGd~V~VkVi~vd~-~grI~LS~k 740 (757)
T 1e3p_A 663 TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDV-LGVGQKVQVEIAEIDS-RGKLSLIPV 740 (757)
T ss_dssp ----------CBEEECC-CSCEECCC---CCCCC--------------------CCSSCBCCCCCCCCCS-SCC------
T ss_pred hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccc-cCCCCEEEEEEEEECC-CCCEEEEEe
Confidence 46789999999999999999999998889999999999 99999999988 9999999999999998 899999999
Q ss_pred ehhhhHHHHHHhhh
Q 021034 171 MIQYELAWERCRQL 184 (318)
Q Consensus 171 ~~~~~~~~~~~~~~ 184 (318)
.... .+|...+..
T Consensus 741 ~~~~-~pw~~~~~~ 753 (757)
T 1e3p_A 741 IEGE-EAASDEKKD 753 (757)
T ss_dssp --------------
T ss_pred cCCC-Cchhhhhhc
Confidence 9875 588776543
No 46
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.82 E-value=6.5e-09 Score=88.58 Aligned_cols=58 Identities=33% Similarity=0.629 Sum_probs=53.4
Q ss_pred hcccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccc-----------cCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV-----------ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~-----------~~~~~~~~~Gq~V~v~V 318 (318)
+..+|+++.|+|++++++|+||+++.++||+|+|++++++. .+..+.|++||.|++||
T Consensus 78 ~p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV 146 (180)
T 4ayb_E 78 VPVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARV 146 (180)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEE
T ss_pred eccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEE
Confidence 45679999999999999999999999999999999999876 57888999999999986
No 47
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.80 E-value=8.3e-09 Score=87.86 Aligned_cols=56 Identities=32% Similarity=0.447 Sum_probs=53.1
Q ss_pred cccCeEEEEEEEEEEcceEEEEEC-----------CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIG-----------GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~-----------gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.+ |++|.|+|++++++|+||+|. ++.|++|+|++++.+..++.+.|++||.|.|+|
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~~~~~~~~~~~~~GD~V~akV 122 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDEGYVKEISEAVGYLDILKARV 122 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTSSCCSSGGGTCCTTCEEEEEE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCcchhhCHhhcCCCCCEEEEEE
Confidence 46 999999999999999999995 589999999999999999999999999999986
No 48
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.80 E-value=5.7e-10 Score=112.96 Aligned_cols=59 Identities=39% Similarity=0.619 Sum_probs=0.0
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++++|+++.|+|++|++||+||+|. |++||||+|+++|+++.++.+.|++||.|+|+|
T Consensus 633 ~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~~rv~~~~d~~kvGD~V~VkV 692 (726)
T 4aid_A 633 DEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISNERVAKPSDVLKEGQMVKVKL 692 (726)
T ss_dssp ------------------------------------------------------------
T ss_pred hhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCcccccCccccCCCCCEEEEEE
Confidence 67899999999999999999999998 999999999999999999999999999999986
No 49
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.79 E-value=1.2e-10 Score=118.72 Aligned_cols=130 Identities=17% Similarity=0.238 Sum_probs=50.5
Q ss_pred CCCEE--EEEEEE--EECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 99 LGTKV--KGTVFC--TDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 99 ~G~iv--~G~V~~--i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
.|+++ .|++++ +.+.|++|+++. +|.++++..++.......+. ++. + . .
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~~~~a~~~-------i~~-----------i--~--~--- 661 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPAAEAARAT-------ING-----------I--A--N--- 661 (757)
T ss_dssp ------------CTTCCCCCSCC----------CCCBSSHHHHCC-----------------------------------
T ss_pred eehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHHHHHHHHH-------HHH-----------h--c--c---
Confidence 46655 266776 567899999984 79999988775433221110 000 0 0 0
Q ss_pred hHHHHHHhhhcCCCcEEEEEEEEEEcCeEEEEEC-CEEEEEeCccc----CCc--CCcchh--cCCeEeEEEEEEecccC
Q 021034 175 ELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQI----SSK--STAEEL--LGKDLPLKFVEVDEEQS 245 (318)
Q Consensus 175 ~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~-gl~gfip~s~l----s~~--~~~~~~--vGq~v~~kVl~vd~~~~ 245 (318)
+ ..++.|++++|+|+++.++|+||++. |++||+|.|++ ++. .++.+. +||+|+++|+++|+ ++
T Consensus 662 --p-----~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~~rv~~~~~~~~vGd~V~VkVi~vd~-~g 733 (757)
T 1e3p_A 662 --P-----TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGGKRVENVEDVLGVGQKVQVEIAEIDS-RG 733 (757)
T ss_dssp ------------------CBEEECC-CSCEECCC---CCCCC-------------------CCSSCBCCCCCCCCCS-SC
T ss_pred --h-----hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCCCcccCcccccCCCCEEEEEEEEECC-CC
Confidence 0 12468999999999999999999995 89999999999 765 344443 79999999999998 89
Q ss_pred eEeeehhhhhhhhHhhcc
Q 021034 246 RLVLSNRKAMADSQAQLG 263 (318)
Q Consensus 246 ~i~lS~K~~l~~~~~~l~ 263 (318)
++.||+|+...++|.+.+
T Consensus 734 rI~LS~k~~~~~pw~~~~ 751 (757)
T 1e3p_A 734 KLSLIPVIEGEEAASDEK 751 (757)
T ss_dssp C-----------------
T ss_pred CEEEEEecCCCCchhhhh
Confidence 999999998888775544
No 50
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.79 E-value=1.1e-08 Score=86.49 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=48.1
Q ss_pred ccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccccCc----------ccccCCCCEEEEEC
Q 021034 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI----------ATVLQPGDTLKVCL 318 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~~~~----------~~~~~~Gq~V~v~V 318 (318)
.+|+++.|+|+++++||+||+++..+||+|+|++++.+.-++ ++.|++||.|+|+|
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV 147 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKI 147 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEE
T ss_pred CCCCEEEEEEEEEecCEEEEEecCeEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEE
Confidence 489999999999999999999988999999999986533222 26799999999986
No 51
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.79 E-value=1.1e-09 Score=112.00 Aligned_cols=59 Identities=39% Similarity=0.638 Sum_probs=56.4
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++++|+++.|+|++|++||+||+++ +++||||+|+++|.++.+|.+.|++||.|+|+|
T Consensus 650 ~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd~~v~d~~~~~~vGd~V~VkV 709 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFVKDPYEVVKAGDIVKVKV 709 (785)
T ss_dssp TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCSSCCSCHHHHCCTTCCCCCBE
T ss_pred hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCccccCChhheeCCCCEEEEEE
Confidence 56889999999999999999999999 899999999999999999999999999999876
No 52
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.77 E-value=1.4e-08 Score=90.22 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc----cccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeee
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH----KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~----~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~ 171 (318)
.+++|++|.|+|+++.++|++|+++++.+|+||.+|++.. +..++.+. |++||.|.++|+++++ ++++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~-l~~GD~V~a~Vi~v~~-~~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSL-LKVGDYIKAKVVAFDK-TRSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTS-SCTTCEEEEEEEEECT-TSCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhc-CCCCCEEEEEEEEECC-CCcEEEEEec
Confidence 6899999999999999999999999889999999999862 34566666 9999999999999986 4689999874
No 53
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.76 E-value=4.3e-08 Score=82.78 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=60.0
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCc----------cccCcCCCCEEEEEEEEEeCCCCe
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV----------EEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~----------~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
....+|++++|+|++++++|+||+++. .+||+|.+++++.+.-++ ++. +++||.|+|+|+++|.+.+.
T Consensus 79 ~~~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~~~ 156 (171)
T 1y14_B 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSS 156 (171)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCE-ECTTCEEEEEEEEEEEETTE
T ss_pred ccCCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceE-ECCCCEEEEEEEEEEcCCCC
Confidence 467899999999999999999999998 999999999976533222 245 89999999999999976642
Q ss_pred --EEEEeee
Q 021034 165 --LVLSLRM 171 (318)
Q Consensus 165 --i~lS~k~ 171 (318)
.+-|+++
T Consensus 157 ~~~igsm~~ 165 (171)
T 1y14_B 157 IHAIGSIKE 165 (171)
T ss_dssp EEEEEECCS
T ss_pred cEEEEEcCC
Confidence 2335554
No 54
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.75 E-value=9.1e-10 Score=115.32 Aligned_cols=59 Identities=8% Similarity=0.089 Sum_probs=0.0
Q ss_pred hhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCccc-ccCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDR-VADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~-~~~~~~~~~~Gq~V~v~V 318 (318)
+++++|++|.|+|++|++||+||+++ |+.||||+|+++|.+ +.+|.+.|++||.|+|+|
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkV 961 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKV 961 (1030)
T ss_dssp -------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEE
Confidence 67899999999999999999999999 999999999999998 899999999999999987
No 55
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.75 E-value=1.4e-08 Score=85.96 Aligned_cols=56 Identities=21% Similarity=0.351 Sum_probs=47.9
Q ss_pred ccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccc----cC--------cccccCCCCEEEEEC
Q 021034 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV----AD--------IATVLQPGDTLKVCL 318 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~----~~--------~~~~~~~Gq~V~v~V 318 (318)
.+|+++.|+|+++++||+||+++.+.||+|+|++++... .+ ....|++||.|+|+|
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l~~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV 147 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKI 147 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEECCEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEE
Confidence 489999999999999999999997889999999986532 21 155799999999986
No 56
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.74 E-value=1.1e-09 Score=111.16 Aligned_cols=60 Identities=38% Similarity=0.702 Sum_probs=0.0
Q ss_pred HhhcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 259 QAQLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 259 ~~~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
..++++|+++.|+|+++++||+||++. |+.||+|+|+++|+++.++++.|++||.|+|+|
T Consensus 622 ~~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~~~v~~~~~~~~vGd~V~VkV 682 (723)
T 3cdi_A 622 TAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKV 682 (723)
T ss_dssp -------------------------------------------------------------
T ss_pred hhhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCccccCcccccCCCCEEEEEE
Confidence 367889999999999999999999998 999999999999999999999999999999986
No 57
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.71 E-value=1.9e-08 Score=87.88 Aligned_cols=56 Identities=21% Similarity=0.250 Sum_probs=48.6
Q ss_pred ccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccccCc----------ccccCCCCEEEEEC
Q 021034 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI----------ATVLQPGDTLKVCL 318 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~~~~----------~~~~~~Gq~V~v~V 318 (318)
.+|+++.|+|+++++||+||+++..+||+|+|+|++.+.-++ ++.|++||.|+|+|
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV 147 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGPMKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKI 147 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTTSEEEEEGGGSCSSCCCBSSCSSCEEECSSCEEETTCEEEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecCcEEEEEHHHCCccceeccccccceeeccccEECCCCEEEEEE
Confidence 689999999999999999999987999999999986543222 26799999999986
No 58
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.71 E-value=4.4e-08 Score=85.59 Aligned_cols=77 Identities=16% Similarity=0.118 Sum_probs=62.9
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCcc----------ccCcCCCCEEEEEEEEEeCCCC-
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVE----------EAGIVPGLKEEFVIIGENEADD- 163 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~----------~~~~~~G~~v~v~Vl~vd~~~~- 163 (318)
...++|++++|+|++++++|+||+++. .+||+|+++|++.+.-++. +. +++||.|+|+|+++|.+.+
T Consensus 79 ~~p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d~~~~d~~~~~w~~~~~~~~-~~~Gd~VrVkV~~vd~~~~~ 156 (215)
T 2b8k_G 79 FKPFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDV-ITIKSRIRVKIEGCISQVSS 156 (215)
T ss_dssp ECCCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCSSCCCBSSCSSCEEECSSCE-EETTCEEEEEEEEEEEETTE
T ss_pred eccCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCccceeccccccceeeccccE-ECCCCEEEEEEEEEEcCCCc
Confidence 456899999999999999999999987 9999999999865443332 44 8899999999999998765
Q ss_pred --eEEEEeeehhh
Q 021034 164 --SLVLSLRMIQY 174 (318)
Q Consensus 164 --~i~lS~k~~~~ 174 (318)
++- |++..-.
T Consensus 157 i~~Ig-Smk~~~L 168 (215)
T 2b8k_G 157 IHAIG-SIKEDYL 168 (215)
T ss_dssp EEEEE-ECCSTTC
T ss_pred cEEEE-EcCCCCC
Confidence 444 8877543
No 59
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.69 E-value=9.6e-09 Score=89.51 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=54.2
Q ss_pred hcccCeEEEEEEEEEEcceEEEEEC---------CeEEEEecCCcCccccc--CcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIG---------GINGLLHVSQISHDRVA--DIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~---------gv~Glv~~s~ls~~~~~--~~~~~~~~Gq~V~v~V 318 (318)
.+++|++|.|+|++++++|+||+|+ ++.|++|++++++.+.. ++.+.|++||.|+|+|
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~~~~~~~~~~~~l~~GD~V~akV 146 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKV 146 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGTCSSCCCCGGGTCCSSSEEEEEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHcccccccccchhhhcCCCCEEEEEE
Confidence 5788999999999999999999984 67999999999999888 8999999999999986
No 60
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.68 E-value=7.4e-08 Score=81.38 Aligned_cols=76 Identities=16% Similarity=0.123 Sum_probs=59.6
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCc------------cccCcCCCCEEEEEEEEEeCCC
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV------------EEAGIVPGLKEEFVIIGENEAD 162 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~------------~~~~~~~G~~v~v~Vl~vd~~~ 162 (318)
....+|++++|+|++++++|+||+++ ..+|++|.+++++.+.-++ .+. +++||.|+|+|+++|.+.
T Consensus 77 ~~~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~-~~~Gd~V~vkV~~vd~~~ 154 (172)
T 2c35_B 77 FRPFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIV-IQQDDEIRLKIVGTRVDK 154 (172)
T ss_dssp ECCCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSE-EETTCEEEEEEEEEEEET
T ss_pred eeCCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEE-ECCCCEEEEEEEEEEcCC
Confidence 35679999999999999999999997 4779999999976533222 224 889999999999999765
Q ss_pred Ce--EEEEeeeh
Q 021034 163 DS--LVLSLRMI 172 (318)
Q Consensus 163 ~~--i~lS~k~~ 172 (318)
+. .+.|+++.
T Consensus 155 ~~~~~igsm~~~ 166 (172)
T 2c35_B 155 NDIFAIGSLMDD 166 (172)
T ss_dssp TEEEEEEECCST
T ss_pred CCcEEEEEecCC
Confidence 52 33377653
No 61
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=98.63 E-value=2e-07 Score=86.85 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=63.1
Q ss_pred HHHhhhccCCCCCCEEEEEEEE----EECCeEEEEeCC---CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeC
Q 021034 88 SALEKYDFNSELGTKVKGTVFC----TDNRGALVDITA---KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160 (318)
Q Consensus 88 ~~~~~~~~~~~~G~iv~G~V~~----i~~~G~~V~i~~---~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~ 160 (318)
.++++| .-..|++++|+|.+ +.+++++|++|+ +.+|+||.+|+. |.+. |++||+++|+|++++.
T Consensus 121 ~i~~ef--~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi------P~E~-~~~GDrVkvyV~~V~~ 191 (366)
T 1k0r_A 121 RTYGEF--STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGES-YEHGNRLRCYVVGVTR 191 (366)
T ss_dssp --------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC------TTCC-CCTTCEEEEEEEEEEC
T ss_pred HHHHHH--HhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC------CCcc-CCCCCEEEEEEEEEec
Confidence 455655 35699999999999 999999999986 599999999986 3455 9999999999999987
Q ss_pred CC--CeEEEEeeehhhh
Q 021034 161 AD--DSLVLSLRMIQYE 175 (318)
Q Consensus 161 ~~--~~i~lS~k~~~~~ 175 (318)
+. .++.||+..+...
T Consensus 192 ~~kgpqI~LSRT~p~lv 208 (366)
T 1k0r_A 192 GAREPLITLSRTHPNLV 208 (366)
T ss_dssp CSSSCEEEEESSCHHHH
T ss_pred CCCccEEEEEeCChHHH
Confidence 63 4799999888663
No 62
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=98.61 E-value=1.5e-07 Score=83.25 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCCCCCEEEEEEEE----EECCeEEEEeCC---CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCC--CeEE
Q 021034 96 NSELGTKVKGTVFC----TDNRGALVDITA---KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEAD--DSLV 166 (318)
Q Consensus 96 ~~~~G~iv~G~V~~----i~~~G~~V~i~~---~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~--~~i~ 166 (318)
.-..|++++|+|.+ +.++.++|++|. +.+|+||.+|+. |.+. |++||+++|+|++++... .++.
T Consensus 4 ~~r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~-~~~GDrIkayV~~V~~~~~gpqIi 76 (251)
T 2asb_A 4 STREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGES-YEHGNRLRCYVVGVTRGAREPLIT 76 (251)
T ss_dssp CCCTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCC-CCTTCEEEEEEEEEECCSSSCEEE
T ss_pred hhcCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCcc-CCCCCEEEEEEEEEEcCCCCCEEE
Confidence 34689999999999 899999999986 699999999985 4555 999999999999998764 6899
Q ss_pred EEeeehhhhHHHHHH
Q 021034 167 LSLRMIQYELAWERC 181 (318)
Q Consensus 167 lS~k~~~~~~~~~~~ 181 (318)
||+..+.....|-++
T Consensus 77 LSRt~p~lvk~Lfe~ 91 (251)
T 2asb_A 77 LSRTHPNLVRKLFSL 91 (251)
T ss_dssp EESSCHHHHHHHHHH
T ss_pred EEeccHHHHHHHHHh
Confidence 999999876666444
No 63
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.59 E-value=1.4e-08 Score=85.98 Aligned_cols=57 Identities=23% Similarity=0.333 Sum_probs=49.6
Q ss_pred cccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccccCc----------ccccCCCCEEEEEC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADI----------ATVLQPGDTLKVCL 318 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~~~~----------~~~~~~Gq~V~v~V 318 (318)
..+|+++.|+|++++++|+||+++.++||+|.|+|++.+.-++ .+.|++||.|++||
T Consensus 82 p~~Gev~~G~V~~v~~fG~FV~l~~~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV 148 (172)
T 3h0g_G 82 PFRGEVVDAIVTTVNKMGFFANIGPLNVFVSSHLVPPDMKFDPTANPPNYSGEDQVIEKGSNVRLKI 148 (172)
T ss_dssp CCTTCEEECCCCEEETTEEECCBTTBCCEEEGGGSCTTCCCBSSSSSCBEESSSCEECSSCCEEEEE
T ss_pred cCCCCEEEEEEEEEEcceEEEEeCCeEEEEEHHHCCCccccCcccccceEecCCcEECCCCEEEEEE
Confidence 3479999999999999999999998889999999987644333 57899999999986
No 64
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.50 E-value=7e-08 Score=86.34 Aligned_cols=58 Identities=26% Similarity=0.395 Sum_probs=54.1
Q ss_pred hcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccc---cCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV---ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~---~~~~~~~~~Gq~V~v~V 318 (318)
..++|++|.|+|++++++|+||+++ +..|++|++++++.+. .++.+.|++||.|.|+|
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arV 132 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARI 132 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEE
Confidence 4578999999999999999999999 8999999999998777 78899999999999986
No 65
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.48 E-value=1.1e-07 Score=80.30 Aligned_cols=75 Identities=12% Similarity=0.209 Sum_probs=59.9
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCc----------cccCcCCCCEEEEEEEEEeCCCCe
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHV----------EEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~----------~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
.....|++++|+|++++++|+||+++. .+||+|.++|++.+.-++ .+. +++||.|+|+|+++|.+.+.
T Consensus 80 f~p~~Gev~~G~V~~v~~fG~FV~l~~-~~glVh~s~l~~~~~~d~~~~~~~~~~~~~~-~~~Gd~VrvkV~~vd~~~~~ 157 (172)
T 3h0g_G 80 WRPFRGEVVDAIVTTVNKMGFFANIGP-LNVFVSSHLVPPDMKFDPTANPPNYSGEDQV-IEKGSNVRLKIVGTRTDATE 157 (172)
T ss_dssp ECCCTTCEEECCCCEEETTEEECCBTT-BCCEEEGGGSCTTCCCBSSSSSCBEESSSCE-ECSSCCEEEEEEEEEESSSC
T ss_pred eccCCCCEEEEEEEEEEcceEEEEeCC-eEEEEEHHHCCCccccCcccccceEecCCcE-ECCCCEEEEEEEEEECCCCC
Confidence 467899999999999999999999975 779999999976544333 334 89999999999999987643
Q ss_pred E--EEEeee
Q 021034 165 L--VLSLRM 171 (318)
Q Consensus 165 i--~lS~k~ 171 (318)
+ +-|+|+
T Consensus 158 ~~~Igtm~~ 166 (172)
T 3h0g_G 158 IFAIATMKE 166 (172)
T ss_dssp EEEEEECCS
T ss_pred ceEEEEcCC
Confidence 2 226554
No 66
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.39 E-value=3.8e-07 Score=80.48 Aligned_cols=58 Identities=26% Similarity=0.324 Sum_probs=53.3
Q ss_pred hcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcc-cccCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD-RVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~-~~~~~~~~~~~Gq~V~v~V 318 (318)
..++|++|.|+|+.++++|+||+++ ...|++|.+++++. ...+..+.|++||.|.|+|
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arV 113 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKV 113 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEE
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEE
Confidence 3578999999999999999999999 79999999999974 5678899999999999986
No 67
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.37 E-value=1.8e-07 Score=82.91 Aligned_cols=58 Identities=31% Similarity=0.425 Sum_probs=52.6
Q ss_pred hcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcc----cccCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD----RVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~----~~~~~~~~~~~Gq~V~v~V 318 (318)
..++|++|.|+|++++++|+||+++ +..|++|++++++. ...++.+.|++||.|.|+|
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~V 125 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKV 125 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEE
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEE
Confidence 5688999999999999999999999 89999999999863 3567888999999999986
No 68
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.25 E-value=1.5e-06 Score=66.80 Aligned_cols=81 Identities=19% Similarity=0.255 Sum_probs=61.5
Q ss_pred CCCCEEEEEEEEEE---CCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 98 ELGTKVKGTVFCTD---NRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 98 ~~G~iv~G~V~~i~---~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
+.++..+|+|...+ .+| |+.- .++.+.|+|.+++.... +
T Consensus 12 ~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~--------~---------------------------- 54 (101)
T 2bh8_A 12 LQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA--------A---------------------------- 54 (101)
T ss_dssp ----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS--------C----------------------------
T ss_pred cccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC--------c----------------------------
Confidence 46788999999985 357 5554 45689999999986431 2
Q ss_pred hhHHHHHHhhhcCCCcEEEEEEEEEEcCeEEEEEC-CEEEEEeCcccCCc
Q 021034 174 YELAWERCRQLQSEDVVVKGKVVGANKGGVVAEVE-GLRGFVPFSQISSK 222 (318)
Q Consensus 174 ~~~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~-gl~gfip~s~ls~~ 222 (318)
....++.|+.|++.|..+.++|+||+++ +++|++|.|++++.
T Consensus 55 -------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 55 -------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp -------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred -------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 0112368999999999999999999995 99999999999875
No 69
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.21 E-value=1.4e-06 Score=84.95 Aligned_cols=59 Identities=24% Similarity=0.484 Sum_probs=52.3
Q ss_pred hhcccCeEEEEEEEEEEcc--eEEEEEC-CeEEEEecCCcCcccc---------cCcccccCCCCEEEEEC
Q 021034 260 AQLGIGSVVIGTVQSLKPY--GAFIDIG-GINGLLHVSQISHDRV---------ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 260 ~~l~~G~~v~G~V~~i~~~--G~fV~i~-gv~Glv~~s~ls~~~~---------~~~~~~~~~Gq~V~v~V 318 (318)
....+|.++.|+|+++.|+ |+||+++ |-.||+|.++++|.+. .++++.+++||.|.|+|
T Consensus 41 ~~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV 111 (517)
T 2bx2_L 41 HEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI 111 (517)
T ss_dssp SCCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEE
T ss_pred CcCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEE
Confidence 3456899999999999999 9999999 9999999999998763 34678899999999986
No 70
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=98.20 E-value=1.4e-06 Score=75.56 Aligned_cols=56 Identities=13% Similarity=0.217 Sum_probs=49.2
Q ss_pred ccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccc-------------------cCcccccCCCCEEEEEC
Q 021034 263 GIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRV-------------------ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~-------------------~~~~~~~~~Gq~V~v~V 318 (318)
.+|+++.|+|++++++|+||+++.++|++|.+++.+++. .+....|++||.|++||
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~lg~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV 154 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTISFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQI 154 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEEeCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEE
Confidence 469999999999999999999988899999999977653 44566799999999986
No 71
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=98.19 E-value=4.6e-06 Score=81.44 Aligned_cols=73 Identities=18% Similarity=0.269 Sum_probs=58.5
Q ss_pred CCCCCCEEEEEEEEEECC--eEEEEeCCCeEEEEeCcccccccc---------cCccccCcCCCCEEEEEEEEEeCCCCe
Q 021034 96 NSELGTKVKGTVFCTDNR--GALVDITAKSSAYLPTQEACIHKI---------KHVEEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~--G~~V~i~~~~~g~lp~sEls~~~~---------~~~~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
...+|+++.|+|.++.++ ||||+++.+..||||++|+++.+. .++++. +++||.+.|.|++....++.
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~-lk~Gq~VlVQV~Ke~~g~KG 120 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDV-LREGQEVIVQIDKEERGNKG 120 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGT-CCTTCEEEEEEEECCCTTCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhh-ccCCCEEEEEEEeeccccCC
Confidence 457899999999999998 999999999999999999986653 234565 89999999999886544443
Q ss_pred EEEEe
Q 021034 165 LVLSL 169 (318)
Q Consensus 165 i~lS~ 169 (318)
..||.
T Consensus 121 a~lTt 125 (517)
T 2bx2_L 121 AALTT 125 (517)
T ss_dssp CEEES
T ss_pred ceEEe
Confidence 33333
No 72
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=98.03 E-value=5.4e-06 Score=72.50 Aligned_cols=56 Identities=7% Similarity=0.179 Sum_probs=46.9
Q ss_pred ccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccc--------------cCcccccCCCCEEEEEC
Q 021034 263 GIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV--------------ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~--------------~~~~~~~~~Gq~V~v~V 318 (318)
..|+++.|+|++++++|+||++. .++|++|.+++..+.. .+-...|++||.|++||
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV 150 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRI 150 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEE
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEE
Confidence 36999999999999999999994 6899999999976542 23356699999999986
No 73
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.97 E-value=3e-05 Score=78.21 Aligned_cols=73 Identities=12% Similarity=0.119 Sum_probs=60.6
Q ss_pred CCCCCC--EEEEEEEEEECCeEEEEe-CCCeEEEEeCccccc--ccc-c---------CccccCcCCCCEEEEEEEEEeC
Q 021034 96 NSELGT--KVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACI--HKI-K---------HVEEAGIVPGLKEEFVIIGENE 160 (318)
Q Consensus 96 ~~~~G~--iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~--~~~-~---------~~~~~~~~~G~~v~v~Vl~vd~ 160 (318)
.-++|+ ..+|+|+++.++|+||.+ ..+.+|++|.+++++ ++. - +.... +++||.|+|+|.++|.
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~-~~lGD~V~VkV~~vd~ 633 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETV-YKVTDVIDVTIAEVRM 633 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEE-EETTCEEEEEEEEEET
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCE-eCCCCEEEEEEEEEeC
Confidence 346899 999999999999999999 567999999999963 221 0 22344 8999999999999999
Q ss_pred CCCeEEEEe
Q 021034 161 ADDSLVLSL 169 (318)
Q Consensus 161 ~~~~i~lS~ 169 (318)
+++++.+++
T Consensus 634 ~~~~I~~~l 642 (644)
T 2id0_A 634 ETRSIIARP 642 (644)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEE
Confidence 999999886
No 74
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.89 E-value=5.2e-05 Score=63.91 Aligned_cols=74 Identities=12% Similarity=-0.057 Sum_probs=62.2
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCC-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeeh
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMI 172 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~ 172 (318)
..++||+|.|+|+.+..++++|+++. ...|+||.+.+... .++.... +++||.|.++|.+++. ++.+.|||-.+
T Consensus 4 ~P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~g~-~k~~r~~-l~~GDlV~ArV~~~~~-~~~~~Ltc~~~ 78 (175)
T 2ja9_A 4 IPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNA-SKKNRPT-LQVGDLVYARVCTAEK-ELEAEIECFDS 78 (175)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSSTTC-CSSSCCC-CCTTCEEEEEEEECCT-TSCCEEESSCT
T ss_pred cCCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCCch-hhhhhcc-CCCCCEEEEEEEEecC-CCceEEEeccc
Confidence 57899999999999999999999998 79999999988632 3444444 8999999999999875 46789998654
No 75
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.88 E-value=1.9e-05 Score=72.31 Aligned_cols=75 Identities=13% Similarity=0.084 Sum_probs=60.9
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccc-ccc---------CccccCcCCCCEEEEEEEEEeCCCCeE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIK---------HVEEAGIVPGLKEEFVIIGENEADDSL 165 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~-~~~---------~~~~~~~~~G~~v~v~Vl~vd~~~~~i 165 (318)
.+++|++|.|+|+.+.+++++|+++....|++|+++++.. .+. +..+. |++||.|.++|++++. ++.+
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~-l~vGDlV~ArVisv~~-~~~i 169 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGF-LQEGDLISAEVQAVFS-DGAV 169 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHH-SCSSCEECCEEEEEET-TTEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhcc-CCCCCEEEEEEEEcCC-CCCE
Confidence 6789999999999999999999999778899999998652 221 12244 8999999999999984 6789
Q ss_pred EEEeeeh
Q 021034 166 VLSLRMI 172 (318)
Q Consensus 166 ~lS~k~~ 172 (318)
.||+|..
T Consensus 170 ~LStr~~ 176 (308)
T 2nn6_H 170 SLHTRSL 176 (308)
T ss_dssp EEECCSS
T ss_pred EEEecCc
Confidence 9998853
No 76
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.87 E-value=5.7e-05 Score=65.25 Aligned_cols=65 Identities=15% Similarity=0.094 Sum_probs=53.5
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc-------------------cCccccCcCCCCEEEEEEE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-------------------KHVEEAGIVPGLKEEFVII 156 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~-------------------~~~~~~~~~~G~~v~v~Vl 156 (318)
...+|+++.|+|+++++.|+||+++ ..+|+++.+++..++. ++.... +++|+.|+++|.
T Consensus 78 ~p~~GEv~~G~Vs~vt~~GifV~lg-~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~-~~~Gd~VrvrV~ 155 (203)
T 3ayh_B 78 RPFRGEVMLGKIKSCSEEGIRVTIS-FFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELY-FDIDEEIRFQIE 155 (203)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEE-CCTTCEEEEEEE
T ss_pred ccCCCCEEEEEEEEEeccEEEEEEe-CceEEEEcHHhCCCCceECccCceEEeecccccccccCCcE-EcCCCEEEEEEE
Confidence 5678999999999999999999995 6899999999966442 222333 899999999999
Q ss_pred EEeCCC
Q 021034 157 GENEAD 162 (318)
Q Consensus 157 ~vd~~~ 162 (318)
+++..+
T Consensus 156 ~v~~~~ 161 (203)
T 3ayh_B 156 SEDFVD 161 (203)
T ss_dssp EEEECC
T ss_pred EEEccc
Confidence 988654
No 77
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.77 E-value=9.3e-05 Score=74.67 Aligned_cols=66 Identities=14% Similarity=0.293 Sum_probs=55.9
Q ss_pred CCCc--EEEEEEEEEEcCeEEEEEC--CEEEEEeCcccCC--c---CC-----c-----chh-cCCeEeEEEEEEecccC
Q 021034 186 SEDV--VVKGKVVGANKGGVVAEVE--GLRGFVPFSQISS--K---ST-----A-----EEL-LGKDLPLKFVEVDEEQS 245 (318)
Q Consensus 186 ~~G~--iv~g~V~~v~~~G~~V~i~--gl~gfip~s~ls~--~---~~-----~-----~~~-vGq~v~~kVl~vd~~~~ 245 (318)
+.|+ .++|+|++++++|+||++. |+.||||.|++++ . .+ + ..+ +||.|+++|.++|.+++
T Consensus 557 ~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 (644)
T ss_dssp GTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTT
T ss_pred ccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCC
Confidence 4788 9999999999999999993 8999999999974 1 10 1 224 79999999999999999
Q ss_pred eEeeeh
Q 021034 246 RLVLSN 251 (318)
Q Consensus 246 ~i~lS~ 251 (318)
+|.+++
T Consensus 637 ~I~~~l 642 (644)
T 2id0_A 637 SIIARP 642 (644)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999875
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.75 E-value=6.8e-05 Score=66.29 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=56.8
Q ss_pred CCCcEEEEEEEE----EEcCeEEEEECC----EEEEEeCcccCCcCCcchh-cCCeEeEEEEEEeccc--CeEeeehhhh
Q 021034 186 SEDVVVKGKVVG----ANKGGVVAEVEG----LRGFVPFSQISSKSTAEEL-LGKDLPLKFVEVDEEQ--SRLVLSNRKA 254 (318)
Q Consensus 186 ~~G~iv~g~V~~----v~~~G~~V~i~g----l~gfip~s~ls~~~~~~~~-vGq~v~~kVl~vd~~~--~~i~lS~K~~ 254 (318)
..|++|+|+|.+ +.++.++|+++. .+|+||.+++..+. .| .|+.+++.|++++.+. .++.||+...
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqip~E---~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p 82 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGE---SYEHGNRLRCYVVGVTRGAREPLITLSRTHP 82 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSCTTC---CCCTTCEEEEEEEEEECCSSSCEEEEESSCH
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcCCCc---cCCCCCEEEEEEEEEEcCCCCCEEEEEeccH
Confidence 489999999999 899999999985 99999999987542 34 7999999999998764 5799998764
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.74 E-value=4.5e-05 Score=71.10 Aligned_cols=66 Identities=21% Similarity=0.288 Sum_probs=56.6
Q ss_pred CCCcEEEEEEEE----EEcCeEEEEECC----EEEEEeCcccCCcCCcchh-cCCeEeEEEEEEecccC--eEeeehhhh
Q 021034 186 SEDVVVKGKVVG----ANKGGVVAEVEG----LRGFVPFSQISSKSTAEEL-LGKDLPLKFVEVDEEQS--RLVLSNRKA 254 (318)
Q Consensus 186 ~~G~iv~g~V~~----v~~~G~~V~i~g----l~gfip~s~ls~~~~~~~~-vGq~v~~kVl~vd~~~~--~i~lS~K~~ 254 (318)
..|++|+|+|.+ +.+++++|++|+ .+|+||.+++..+. .| +|+.|+|.|++++.+.+ .|.||+...
T Consensus 129 r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP~E---~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~p 205 (366)
T 1k0r_A 129 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVPGE---SYEHGNRLRCYVVGVTRGAREPLITLSRTHP 205 (366)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCTTC---CCCTTCEEEEEEEEEECCSSSCEEEEESSCH
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCCCc---cCCCCCEEEEEEEEEecCCCccEEEEEeCCh
Confidence 389999999999 999999999986 99999999988642 34 79999999999997644 588998654
No 80
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00011 Score=64.06 Aligned_cols=68 Identities=18% Similarity=0.057 Sum_probs=54.5
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc--------------cCccccCcCCCCEEEEEEEEEeCC
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI--------------KHVEEAGIVPGLKEEFVIIGENEA 161 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~--------------~~~~~~~~~~G~~v~v~Vl~vd~~ 161 (318)
....|+++.|+|++++++|+||++.+..+|+++.+++..++. ++-... +++|+.|+++|.+++..
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~-~~~Gd~VrvrV~~v~~~ 156 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLY-FDVNEKIRFRIEREVFV 156 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEE-ECTTCEEEEEEEEEEEC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcE-EcCCCEEEEEEEEEEcc
Confidence 567899999999999999999999556899999999865432 112223 88999999999999876
Q ss_pred CCe
Q 021034 162 DDS 164 (318)
Q Consensus 162 ~~~ 164 (318)
++.
T Consensus 157 ~~~ 159 (218)
T 2ckz_B 157 DVK 159 (218)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 81
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.41 E-value=0.00025 Score=72.80 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=47.2
Q ss_pred cEEEEEEEEEEcCeEEEEEC--CEEEEEeCcccC--CcC-------------C-----cchh-cCCeEeEEEEEEecc--
Q 021034 189 VVVKGKVVGANKGGVVAEVE--GLRGFVPFSQIS--SKS-------------T-----AEEL-LGKDLPLKFVEVDEE-- 243 (318)
Q Consensus 189 ~iv~g~V~~v~~~G~~V~i~--gl~gfip~s~ls--~~~-------------~-----~~~~-vGq~v~~kVl~vd~~-- 243 (318)
+.+.|+|+++.++|+||.+. |+.|+||.++++ +.. + ...+ +||+|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 79999999999999999995 899999999995 210 1 1234 799999999999987
Q ss_pred -cCeEeeehh
Q 021034 244 -QSRLVLSNR 252 (318)
Q Consensus 244 -~~~i~lS~K 252 (318)
+++|.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 689999986
No 82
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.38 E-value=0.00034 Score=71.88 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=50.4
Q ss_pred CEEEEEEEEEECCeEEEEeCC-CeEEEEeCcccc--cccc-----------cC----ccccCcCCCCEEEEEEEEEeCC-
Q 021034 101 TKVKGTVFCTDNRGALVDITA-KSSAYLPTQEAC--IHKI-----------KH----VEEAGIVPGLKEEFVIIGENEA- 161 (318)
Q Consensus 101 ~iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls--~~~~-----------~~----~~~~~~~~G~~v~v~Vl~vd~~- 161 (318)
+...|+|+++.++|+||.+.. +.+|++|+++++ ..+. .+ .... +++||.|+|+|+.+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~-~~lGD~V~VkV~~vd~~~ 749 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD-VYVFDKVEVQVRSVMDPI 749 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEE-EETTCEEEEEEC------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcE-EecCCEEEEEEEEEECcc
Confidence 799999999999999999965 799999999996 3221 12 1344 89999999999999987
Q ss_pred --CCeEEEEee
Q 021034 162 --DDSLVLSLR 170 (318)
Q Consensus 162 --~~~i~lS~k 170 (318)
++++.+|+|
T Consensus 750 ~~~~kI~lslk 760 (760)
T 2vnu_D 750 TSKRKAELLLK 760 (760)
T ss_dssp --CCEEEC---
T ss_pred ccCCcEEEEeC
Confidence 589999875
No 83
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=97.34 E-value=0.00037 Score=58.65 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=49.2
Q ss_pred cccCeEEEEEEEEEEcceEEEEECC--eEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIGG--INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~g--v~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++||+|.|.|..+..++++|+++. ..|++|.+.+. ....+....|++||.|.|+|
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~-g~~k~~r~~l~~GDlV~ArV 62 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP-NASKKNRPTLQVGDLVYARV 62 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST-TCCSSSCCCCCTTCEEEEEE
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC-chhhhhhccCCCCCEEEEEE
Confidence 3579999999999999999999996 99999999886 33466778899999999986
No 84
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.27 E-value=0.00012 Score=67.04 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=47.7
Q ss_pred hcccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcc----cc------cCcccccCCCCEEEEEC
Q 021034 261 QLGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHD----RV------ADIATVLQPGDTLKVCL 318 (318)
Q Consensus 261 ~l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~----~~------~~~~~~~~~Gq~V~v~V 318 (318)
..++|++|.|.|+.++++|+||+++ ...|++|.|+++++ |. .+..+.|++||.|.|+|
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArV 160 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEV 160 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEE
Confidence 4568999999999999999999999 68999999999763 22 13457899999999986
No 85
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.22 E-value=0.00077 Score=61.12 Aligned_cols=73 Identities=16% Similarity=-0.033 Sum_probs=61.1
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeee
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRM 171 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~ 171 (318)
-.++|++|.|+|+++....+.|+|+....|+||.+++.. ..++..+. |++||.|.++|++.+. ++.+.|||-.
T Consensus 124 iP~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~G-atk~~r~~-f~~GDlV~ArV~s~~~-~~~~eLsc~~ 196 (289)
T 2nn6_G 124 VPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFEG-ATKRNRPN-VQVGDLIYGQFVVANK-DMEPEMVCID 196 (289)
T ss_dssp CCCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSSC-CSSCSSSS-SCTTCEEEEEEEECCT-TSCCEEECSB
T ss_pred CCCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcCc-chhhhhhh-cCCCCEEEEEEEEcCC-CCceEEEecc
Confidence 578999999999999999999999988899999998763 23444555 9999999999999874 4568889854
No 86
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00052 Score=72.09 Aligned_cols=70 Identities=13% Similarity=0.037 Sum_probs=57.3
Q ss_pred CCEEEEEEEEEECCeEEEEeCC-CeEEEEeCcccc--cccc-----------cC----ccccCcCCCCEEEEEEEEEeCC
Q 021034 100 GTKVKGTVFCTDNRGALVDITA-KSSAYLPTQEAC--IHKI-----------KH----VEEAGIVPGLKEEFVIIGENEA 161 (318)
Q Consensus 100 G~iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls--~~~~-----------~~----~~~~~~~~G~~v~v~Vl~vd~~ 161 (318)
|+...|+|+++.++|+||.+.. +.+|++|+++++ +++. .+ .... +++||.|+|+|..++..
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~-~~lGD~V~VkV~~vd~~ 965 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRD-VYVFDKVEVQVRSVMDP 965 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEE-EETTCEEEEEECCCCCS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcE-EccCCEEEEEEEEEcCc
Confidence 9999999999999999999965 799999999996 3321 11 2344 89999999999998863
Q ss_pred ---CCeEEEEee
Q 021034 162 ---DDSLVLSLR 170 (318)
Q Consensus 162 ---~~~i~lS~k 170 (318)
++++.||+|
T Consensus 966 ~~~~~kI~Lslk 977 (977)
T 2wp8_J 966 ITSKRKAELLLK 977 (977)
T ss_dssp SSCCCCCCEEEC
T ss_pred ccCCCceEEEeC
Confidence 378999886
No 87
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.00039 Score=73.03 Aligned_cols=66 Identities=15% Similarity=0.323 Sum_probs=54.5
Q ss_pred CCcEEEEEEEEEEcCeEEEEEC--CEEEEEeCcccC--CcC-------------C-----cchh-cCCeEeEEEEEEecc
Q 021034 187 EDVVVKGKVVGANKGGVVAEVE--GLRGFVPFSQIS--SKS-------------T-----AEEL-LGKDLPLKFVEVDEE 243 (318)
Q Consensus 187 ~G~iv~g~V~~v~~~G~~V~i~--gl~gfip~s~ls--~~~-------------~-----~~~~-vGq~v~~kVl~vd~~ 243 (318)
.|+.+.|+|+++.++|+||.+. |+.|+||.++|+ +.. . ...+ +||+|+++|..+|.+
T Consensus 886 ~ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~ 965 (977)
T 2wp8_J 886 NESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDP 965 (977)
T ss_dssp TTCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCS
T ss_pred cceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCc
Confidence 3889999999999999999995 899999999996 221 1 1224 799999999999874
Q ss_pred ---cCeEeeehh
Q 021034 244 ---QSRLVLSNR 252 (318)
Q Consensus 244 ---~~~i~lS~K 252 (318)
+++|.||+|
T Consensus 966 ~~~~~kI~Lslk 977 (977)
T 2wp8_J 966 ITSKRKAELLLK 977 (977)
T ss_dssp SSCCCCCCEEEC
T ss_pred ccCCCceEEEeC
Confidence 478999976
No 88
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=95.85 E-value=0.012 Score=53.20 Aligned_cols=56 Identities=20% Similarity=0.100 Sum_probs=49.2
Q ss_pred cccCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++|++|-|.|+.++...+.|+|+ -..|++|.+++. ....+....|++||-|.|+|
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~-Gatk~~r~~f~~GDlV~ArV 181 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE-GATKRNRPNVQVGDLIYGQF 181 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS-CCSSCSSSSSCTTCEEEEEE
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC-cchhhhhhhcCCCCEEEEEE
Confidence 468999999999999999999999 789999999876 33456778899999999986
No 89
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.14 Score=44.12 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=50.7
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccc-----------cCcCCCCEEEEEEEEEeCCCC
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEE-----------AGIVPGLKEEFVIIGENEADD 163 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~-----------~~~~~G~~v~v~Vl~vd~~~~ 163 (318)
.....|+++.|+|.++.+.|+.+-+.+-..+++|...+...+.-++.+ ..-++|+.|+++|.+++..++
T Consensus 125 FrPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 125 WQPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp ECCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred EecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 357799999999999999888776655678999999885432211111 012469999999999986554
Q ss_pred e
Q 021034 164 S 164 (318)
Q Consensus 164 ~ 164 (318)
.
T Consensus 205 ~ 205 (214)
T 2rf4_A 205 V 205 (214)
T ss_dssp S
T ss_pred E
Confidence 4
No 90
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=92.90 E-value=0.7 Score=34.92 Aligned_cols=57 Identities=9% Similarity=-0.018 Sum_probs=47.2
Q ss_pred CCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccc-----cC-ccccCcCCCCEEEEE
Q 021034 97 SELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKI-----KH-VEEAGIVPGLKEEFV 154 (318)
Q Consensus 97 ~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~-----~~-~~~~~~~~G~~v~v~ 154 (318)
...|....|.|.++.+.++.|.+.++..+.||.+.|.+..- +. +++. +++|+.|.++
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~-l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKR-IRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGS-CCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhcc-CCCCCEEEEE
Confidence 34589999999999999999999777888899999998642 33 5555 8999999887
No 91
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=92.06 E-value=0.39 Score=36.40 Aligned_cols=54 Identities=13% Similarity=0.076 Sum_probs=46.6
Q ss_pred cCeEEEEEEEEEEcceEEEEEC-CeEEEEecCCcCcccc-----cC-cccccCCCCEEEEE
Q 021034 264 IGSVVIGTVQSLKPYGAFIDIG-GINGLLHVSQISHDRV-----AD-IATVLQPGDTLKVC 317 (318)
Q Consensus 264 ~G~~v~G~V~~i~~~G~fV~i~-gv~Glv~~s~ls~~~~-----~~-~~~~~~~Gq~V~v~ 317 (318)
.|+.+.+.|.++++.++-|.+. |-.+.|+.+.|.|-+- .. +++.+++||.|.|+
T Consensus 33 ~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 33 SDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred cCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 4889999999999999999996 7888899999999753 34 67789999999875
No 92
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=89.44 E-value=0.96 Score=38.85 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=45.4
Q ss_pred CCCcEEEEEEEEEEcCeEEEE-ECCEEEEEeCcccCCc--CCc--------------chhcCCeEeEEEEEEecccC
Q 021034 186 SEDVVVKGKVVGANKGGVVAE-VEGLRGFVPFSQISSK--STA--------------EELLGKDLPLKFVEVDEEQS 245 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~-i~gl~gfip~s~ls~~--~~~--------------~~~vGq~v~~kVl~vd~~~~ 245 (318)
..|+++.|+|..+++.|+-+- ++-..+|||...+... .++ ...+|++|+++|..++.+.+
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 489999999999999888764 4668899999988532 110 11269999999999986544
No 93
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=86.61 E-value=1.6 Score=34.29 Aligned_cols=88 Identities=14% Similarity=0.010 Sum_probs=58.6
Q ss_pred CCCCEEEEEEEEEECCeEEEEeCCCe--EEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhh
Q 021034 98 ELGTKVKGTVFCTDNRGALVDITAKS--SAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYE 175 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~~G~~V~i~~~~--~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~ 175 (318)
+.|.-.+|+|..+.+++++|.+.+.. .--+|.+++-........ ..|.+||+|+|.- ..+..
T Consensus 13 ~~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~-~~f~~gd~VEV~~----~~~d~----------- 76 (128)
T 3h8z_A 13 SNGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYN-KEITEGDEVEVYS----RANEQ----------- 76 (128)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC-----CCCTTCEEEEEE----CC--------------
T ss_pred CCCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccc-cCCCCCCEEEEEe----cCCCC-----------
Confidence 45999999999999999999996543 457888887653322222 2388999999844 11110
Q ss_pred HHHHHHhhhcCCCcEEEEEEEEEEcCeEEEEECCEE
Q 021034 176 LAWERCRQLQSEDVVVKGKVVGANKGGVVAEVEGLR 211 (318)
Q Consensus 176 ~~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i~gl~ 211 (318)
++--.-.|+|+.+...=++|+..|.+
T Consensus 77 ----------ep~gWw~a~I~~~kg~f~~V~y~~~~ 102 (128)
T 3h8z_A 77 ----------EPCGWWLARVRMMKGDFYVIEYAACD 102 (128)
T ss_dssp ----------CCCEEEEEEEEEEETTEEEEEETTC-
T ss_pred ----------CcCccEEEEEEEeeCCEEEEEEcCCC
Confidence 12337889998888777778875433
No 94
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=85.30 E-value=2 Score=33.77 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=38.8
Q ss_pred cCeEEEEEEEEEEcceEEEEECC---eEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 264 IGSVVIGTVQSLKPYGAFIDIGG---INGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 264 ~G~~v~G~V~~i~~~G~fV~i~g---v~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
.|.-++|+|+.+.+.+++|.+.+ -.--+|.+++.-.........|.+||+|+|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~ 70 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVY 70 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEE
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEE
Confidence 38999999999999999999973 2345666666543333344679999999985
No 95
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=84.68 E-value=3.2 Score=39.91 Aligned_cols=59 Identities=10% Similarity=0.065 Sum_probs=42.6
Q ss_pred CCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEe
Q 021034 98 ELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSL 169 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~ 169 (318)
..|+..+|.|+.+.. ..|+++++++... .. .... +++||.|+|+|.++|..++.+.+..
T Consensus 402 ~~g~~f~g~vv~l~~----------~~glV~v~~l~~d-~~-~~~~-~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVDRRG----------AQATLLIPDLAFD-VQ-VNTP-AAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEEEET----------TEEEEEEGGGTEE-EE-EECC-CCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEEEeC----------cEEEEEECCCCeE-Ee-cCCc-CCCCCEEEEEEEEEccCCCEEEEEE
Confidence 589999998876442 3567777776543 11 1222 8999999999999999998886643
No 96
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=84.65 E-value=18 Score=30.81 Aligned_cols=136 Identities=9% Similarity=0.013 Sum_probs=85.8
Q ss_pred cCCCCEEEEEEEEEeCCCCeEEEEeeehhh----hHHHHHHhhh--------------------c-CCCcEEEEEEEEEE
Q 021034 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQY----ELAWERCRQL--------------------Q-SEDVVVKGKVVGAN 199 (318)
Q Consensus 145 ~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~----~~~~~~~~~~--------------------~-~~G~iv~g~V~~v~ 199 (318)
+.+|+.++|.|..+... +.+.+-...... +.-...+.+. + ..|....|.|.++.
T Consensus 13 l~~~~~~~V~Vt~v~sP-~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~~ 91 (226)
T 4b9x_A 13 FTVDETVDVVVCMMYSP-GEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (226)
T ss_dssp CCTTCEEEEEEEEEEET-TEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEEeCC-CEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999998754 556554432211 1111122211 1 13567889999986
Q ss_pred cCe-EEEEE-C-CEEEEEeCcccCCc-CCcchhcCCeEeEEEEEEecccCeEeeehhhhhhhhHhhcccCeEEEEEEEEE
Q 021034 200 KGG-VVAEV-E-GLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275 (318)
Q Consensus 200 ~~G-~~V~i-~-gl~gfip~s~ls~~-~~~~~~vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~~~l~~G~~v~G~V~~i 275 (318)
+.+ +-|.+ + |-...+|.++|-.- ..+..+-.|-++|++-.+.+..+. -|. ...+.+.++-.|..+.+.|..+
T Consensus 92 ~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~--w~~--ea~~~f~~l~~~k~l~~~V~~~ 167 (226)
T 4b9x_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH--WTK--EATARFQACVVGLKLQARVVEI 167 (226)
T ss_dssp SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECSSSS--CCH--HHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECCCCC--CCH--HHHHHHHHHHCCCeEEEEEEEE
Confidence 554 44554 4 77888998886632 222233478899998777664331 111 1123456677799999999999
Q ss_pred EcceEEEEEC
Q 021034 276 KPYGAFIDIG 285 (318)
Q Consensus 276 ~~~G~fV~i~ 285 (318)
.+.++.|.+.
T Consensus 168 ~~~~~~V~L~ 177 (226)
T 4b9x_A 168 TANGVGVELT 177 (226)
T ss_dssp CSSCEEEEEE
T ss_pred eCCeEEEEEE
Confidence 9999888873
No 97
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=82.78 E-value=9 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.149 Sum_probs=35.5
Q ss_pred EEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 104 KGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 104 ~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
+|+|...++ +|.+-.-.++.+-|+|.+.+.....+. +..||.|++.+..
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 54 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKT-----LKEGQRVSFDVTT 54 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSS-----CCTTCEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCC-----CCCCCEEEEEEEE
Confidence 699999875 355544455689999999996432222 6789999998854
No 98
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=81.09 E-value=14 Score=26.93 Aligned_cols=56 Identities=7% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
.....+...|+|...++..=|+.- .++-+-|+|.+.+... .+ . +..||.|++.+..
T Consensus 12 ~~s~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~-~~----~-L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 12 GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN-LQ----D-LKVGDDVEFEVSS 68 (89)
T ss_dssp SSSCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC-TT----T-CCTTCCEEEEEEE
T ss_pred CCCcccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc-cC----C-CCCCCEEEEEEEE
Confidence 345567899999999764445555 4458999999998654 21 2 7899999998854
No 99
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=81.02 E-value=7.3 Score=28.55 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=42.7
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEe-CC-CeEEEEeCc-ccccccccCccccCcCCCCEEEEEEEEEeCC
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDI-TA-KSSAYLPTQ-EACIHKIKHVEEAGIVPGLKEEFVIIGENEA 161 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i-~~-~~~g~lp~s-Els~~~~~~~~~~~~~~G~~v~v~Vl~vd~~ 161 (318)
.++.+|++.+|.|. +.++-.+|.+ ++ +.+|+|-.. .+-.+...+.++. -+|.++.++|+.+|.-
T Consensus 28 ~~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkk--LVGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 28 MDLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKER--LVGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHH--HTTCEEEEEEEEECSS
T ss_pred cccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHH--hcCceEEEEEEEeccE
Confidence 47889999999665 5666777888 33 688887532 1122223333332 3799999999998853
No 100
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=80.87 E-value=23 Score=29.44 Aligned_cols=135 Identities=9% Similarity=0.015 Sum_probs=84.4
Q ss_pred cCCCCEEEEEEEEEeCCCCeEEEEeeehhh----hHHHHHHhhh--------------------c-CCCcEEEEEEEEEE
Q 021034 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQY----ELAWERCRQL--------------------Q-SEDVVVKGKVVGAN 199 (318)
Q Consensus 145 ~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~----~~~~~~~~~~--------------------~-~~G~iv~g~V~~v~ 199 (318)
+.+|+.++|.|..+... +.+.+-...... +.-...+.+. + ..|....|.|.++.
T Consensus 13 l~~~~~~~V~Vt~v~sP-~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~~ 91 (201)
T 4b9w_A 13 FTVDETVDVVVCMMYSP-GEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEIL 91 (201)
T ss_dssp CCTTCEEEEEEEEEEET-TEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEEC
T ss_pred cCCCCEEEEEEEEEeCC-CEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEEC
Confidence 78999999999998754 556554432211 1111122110 1 13567889999986
Q ss_pred cCe-EEEEE-C-CEEEEEeCcccCCc-CCcchhcCCeEeEEEEEEecccCeEeeehhhhhhhhHhhcccCeEEEEEEEEE
Q 021034 200 KGG-VVAEV-E-GLRGFVPFSQISSK-STAEELLGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSL 275 (318)
Q Consensus 200 ~~G-~~V~i-~-gl~gfip~s~ls~~-~~~~~~vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~~~l~~G~~v~G~V~~i 275 (318)
+.+ +-|.+ + |-...+|.+++-.- ..+..+-.|-++|++-.+.+.... -|. ...+.+.++-.|..+.+.|..+
T Consensus 92 ~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~~~~--w~~--ea~~~f~~l~~~k~l~~~V~~~ 167 (201)
T 4b9w_A 92 PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPPNKH--WTK--EATARFQACVVGLKLQARVVEI 167 (201)
T ss_dssp TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECSSSS--CCH--HHHHHHHHHHTTCCEEEEEEEE
T ss_pred CCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcCCCC--CCH--HHHHHHHHHHCCCEEEEEEEEE
Confidence 554 55555 4 77788888876532 223333478889998777654332 111 1123456666789999999999
Q ss_pred EcceEEEEE
Q 021034 276 KPYGAFIDI 284 (318)
Q Consensus 276 ~~~G~fV~i 284 (318)
.+.++.|.+
T Consensus 168 ~~~~~~V~L 176 (201)
T 4b9w_A 168 TANGVGVEL 176 (201)
T ss_dssp ETTEEEEEE
T ss_pred eCCEEEEEE
Confidence 998888876
No 101
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=80.70 E-value=12 Score=25.94 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=36.9
Q ss_pred EEEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 102 KVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 102 iv~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
...|+|...++ +|.+-.-.++-+-|+|.+.+.....+. +..||.|++.+..
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKT-----LAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCC-----CCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcC-----CCCCCEEEEEEEE
Confidence 46799999975 455554455578999999986542221 6789999998854
No 102
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=79.59 E-value=13 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred CCEEEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCe
Q 021034 100 GTKVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 100 G~iv~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
.....|+|...++ +|.+..-.++.+-|+|.+.+.......--.. +..||.|++.+.. ..++.
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~-l~~G~~V~f~~~~--~~kG~ 70 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRS-VGDGETVEFDVVE--GEKGA 70 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCS-CCSSCEEEEEEEE--CSSSE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHcccccccccccc-CCCCCEEEEEEEE--CCCCc
Confidence 3467899999975 4655554556899999999965311100011 6789999998854 34454
No 103
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=77.16 E-value=7.1 Score=28.39 Aligned_cols=53 Identities=9% Similarity=0.142 Sum_probs=40.1
Q ss_pred CCCCEEEEEEEEEECCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEE
Q 021034 98 ELGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl 156 (318)
+.++...|+|....++.=|+.- +++-+-|+|.+.+... .+ . +..||.|++.+.
T Consensus 14 ~~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-~~----~-L~~G~~V~F~~~ 67 (88)
T 2yty_A 14 SNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-VD----S-LELGDMVEYSLS 67 (88)
T ss_dssp SSCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-TT----T-CCTTCEEEECCC
T ss_pred CCCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-cC----c-CCCCCEEEEEEE
Confidence 3578899999999875445555 4468999999999654 22 2 788999998873
No 104
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=76.67 E-value=7.4 Score=27.79 Aligned_cols=63 Identities=10% Similarity=0.109 Sum_probs=39.6
Q ss_pred CEEEEEEEEEECCeE-EEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEE
Q 021034 101 TKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLS 168 (318)
Q Consensus 101 ~iv~G~V~~i~~~G~-~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS 168 (318)
-.++|+|++..++|. .|.+.++..-.++++= . .+. ......+||.|.+.+..+|..+++++.-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~G---K-~Rk-~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISG---K-MRQ-HYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECH---H-HHH-TTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCc---c-eec-CCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 357899999997665 5888765333333321 1 110 0011678999999887777777777653
No 105
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=75.51 E-value=18 Score=25.27 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=37.3
Q ss_pred EEEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCe
Q 021034 102 KVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 102 iv~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
..+|+|...++ +|.+-.-.++-+ |++.+.+.... . +..||.|++.+.. ..+|.
T Consensus 2 ~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g------~-l~~G~~V~F~~~~--g~kG~ 57 (74)
T 2k5n_A 2 AMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD------L-IKKDAAVTFEPTT--NNKGL 57 (74)
T ss_dssp CEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG------G-CCTTCEEEEEEEE--CSSSE
T ss_pred CcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC------C-CCCCCEEEEEEEe--CCCCc
Confidence 35799999975 355554455566 99999986532 2 7899999998853 34553
No 106
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=73.96 E-value=23 Score=25.95 Aligned_cols=56 Identities=20% Similarity=0.168 Sum_probs=38.3
Q ss_pred CCCcEEEEEEEEEEcCeEEEEE---CCEEEEEeCcccCC--c-CCcc-hhcCCeEeEEEEEEec
Q 021034 186 SEDVVVKGKVVGANKGGVVAEV---EGLRGFVPFSQISS--K-STAE-ELLGKDLPLKFVEVDE 242 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i---~gl~gfip~s~ls~--~-~~~~-~~vGq~v~~kVl~vd~ 242 (318)
.+|++.+|.|.- .++-+.|.+ +|++|++-..---. . .+++ +++|.+|+++|+.+|.
T Consensus 31 ~~g~VtkGiVy~-kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkLVGKtIkVqVIRvD~ 93 (102)
T 1jjg_A 31 SPGSVHEGIVYF-KDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERLVGRVIKTRVVRADG 93 (102)
T ss_dssp CSSCEEEEEEEE-ETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEECS
T ss_pred CCCceEeeEEEE-eCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHhcCceEEEEEEEecc
Confidence 489999998864 445666777 38999886332111 1 2233 3589999999999974
No 107
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=73.53 E-value=14 Score=29.63 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=39.2
Q ss_pred CCCEEEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 99 LGTKVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 99 ~G~iv~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
.|+...|+|...+. +|.+-.-+++-+-|+|.+.+... . . +..||.|++.+..
T Consensus 59 ~g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~-----~-~-L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 59 QGPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGE-----Y-V-PVEGDEVTYKMCS 113 (147)
T ss_dssp HSCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESS-----B-C-CCTTCEEEEEEEE
T ss_pred cCCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCC-----C-c-CCCCCEEEEEEEe
Confidence 47788999999975 45555445568999999998532 1 2 7899999998864
No 108
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=71.65 E-value=3.7 Score=39.45 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=38.2
Q ss_pred CCCcEEEEEEEEEEcCeEEEEECCEEEEEeCcccCCc-CCcchh-cCCeEeEEEEEEecccCeEeee
Q 021034 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQISSK-STAEEL-LGKDLPLKFVEVDEEQSRLVLS 250 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i~gl~gfip~s~ls~~-~~~~~~-vGq~v~~kVl~vd~~~~~i~lS 250 (318)
..|+.++|.|++.... .|+++.+.+... .....+ +||.|+++|.++|..++.+.+.
T Consensus 402 ~~g~~f~g~vv~l~~~---------~glV~v~~l~~d~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~ 459 (469)
T 2r7d_A 402 QPERVWDAVVVDRRGA---------QATLLIPDLAFDVQVNTPAAPGTALQVQFADIDLPQMRVRAR 459 (469)
T ss_dssp CTTCCEEEEEEEEETT---------EEEEEEGGGTEEEEEECCCCTTCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEEEEEeCc---------EEEEEECCCCeEEecCCcCCCCCEEEEEEEEEccCCCEEEEE
Confidence 4788999988765433 344555554432 111234 8999999999999999988654
No 109
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=71.40 E-value=17 Score=24.64 Aligned_cols=49 Identities=18% Similarity=0.179 Sum_probs=34.7
Q ss_pred EEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 103 VKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 103 v~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
..|+|...++ +|.+-.-.+ .+-|+|.+.+.....+. +..||.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g-~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGG-SDVFVHFTAIQGEGFKT-----LEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTE-EEEEEEGGGBCSSSCCC-----CCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCC-ccEEEEHHHccccCCCC-----CCCCCEEEEEEEE
Confidence 3699999875 355443344 89999999996543222 6789999998854
No 110
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=69.52 E-value=5.3 Score=28.55 Aligned_cols=62 Identities=19% Similarity=0.253 Sum_probs=39.6
Q ss_pred cEEEEEEEEEEcCeEE-EEEC-CEEEEEeCcccCCcCCcchhcCCeEeEEEEEEecccCeEeee
Q 021034 189 VVVKGKVVGANKGGVV-AEVE-GLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLVLS 250 (318)
Q Consensus 189 ~iv~g~V~~v~~~G~~-V~i~-gl~gfip~s~ls~~~~~~~~vGq~v~~kVl~vd~~~~~i~lS 250 (318)
-.++|+|++...+|.| |.++ |..-.++.+=--.....+-++|+.|.+.+...|..+++|+.-
T Consensus 14 ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R 77 (79)
T 3i4o_A 14 IEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYR 77 (79)
T ss_dssp SEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEE
Confidence 3589999999866654 8886 643333322111111223347999999888888888888754
No 111
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=68.85 E-value=23 Score=24.74 Aligned_cols=53 Identities=19% Similarity=0.097 Sum_probs=36.2
Q ss_pred EEEEEEEEC---CeEEEEeCCCeEEEEeCcccc-cccccCccccCcCCCCEEEEEEEEEeCCCCe
Q 021034 104 KGTVFCTDN---RGALVDITAKSSAYLPTQEAC-IHKIKHVEEAGIVPGLKEEFVIIGENEADDS 164 (318)
Q Consensus 104 ~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls-~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~ 164 (318)
+|+|...++ +|.+-.-+ +.+-|++.+.+. ....+. +..||.|++.+. ...+|.
T Consensus 2 ~G~Vkwfn~~KGfGFI~~~d-G~DvFvH~s~i~~~~g~~~-----l~~G~~V~F~~~--~g~kG~ 58 (74)
T 2kcm_A 2 KGKVVSYLAAKKYGFIQGDD-GESYFLHFSELLDKKDEGK-----LVKGSMVHFDPT--PTPKGL 58 (74)
T ss_dssp EEEEEEEETTTTEEEEEETT-SCEECCCGGGSSCSGGGTT-----CCTTSEEEEEEE--CTTTSC
T ss_pred CEEEEEEECCCCEEEEecCC-CceEEEEhhhcccCCCCCC-----CCCCCEEEEEEE--ECCCCc
Confidence 689999875 35544434 489999999986 432222 678999999884 334554
No 112
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=68.56 E-value=21 Score=25.13 Aligned_cols=53 Identities=19% Similarity=0.280 Sum_probs=35.7
Q ss_pred CeEEEEEEEEEEc---ceEEEEEC-CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 265 GSVVIGTVQSLKP---YGAFIDIG-GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 265 G~~v~G~V~~i~~---~G~fV~i~-gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
....+|+|+...+ ||....-+ +-+-|+|.|.+.......--..+..||.|+..
T Consensus 6 ~~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~ 62 (79)
T 1h95_A 6 ATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFD 62 (79)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEE
T ss_pred ccccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEE
Confidence 3567899999874 55443334 68999999999754111122457899999764
No 113
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=65.32 E-value=19 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.354 Sum_probs=30.9
Q ss_pred EEEEEEEEEc---ceEEEEEC--CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 268 VIGTVQSLKP---YGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 268 v~G~V~~i~~---~G~fV~i~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
.+|+|+...+ || ||.-. +-. |+|.|.+.... .+.+||.|+..
T Consensus 3 ~~G~Vkwfn~~KGfG-FI~~~dg~~d-FvH~s~i~~~g------~l~~G~~V~F~ 49 (74)
T 2k5n_A 3 MNGTITTWFKDKGFG-FIKDENGDNR-YFHVIKVANPD------LIKKDAAVTFE 49 (74)
T ss_dssp EEEEEEEEETTTTEE-EEEESSSCEE-EEEGGGBSSGG------GCCTTCEEEEE
T ss_pred cceEEEEEECCCCeE-EEecCCCCce-EEEHhHcccCC------CCCCCCEEEEE
Confidence 5799998863 55 55554 456 99999987542 68899999764
No 114
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=64.25 E-value=13 Score=26.99 Aligned_cols=48 Identities=29% Similarity=0.490 Sum_probs=36.5
Q ss_pred cCeEEEEEEEEEEc-ceEEEEEC--CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 264 IGSVVIGTVQSLKP-YGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 264 ~G~~v~G~V~~i~~-~G~fV~i~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
.++..+|+|+...+ || |+.-. |-+-|+|.|.+... ...+.+||.|+..
T Consensus 15 ~~~~~~G~Vk~f~kGfG-FI~~ddgg~DvFvH~S~i~~~-----~~~L~~G~~V~F~ 65 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFG-FIETANHDKEIFFHYSEFSGD-----VDSLELGDMVEYS 65 (88)
T ss_dssp SCCCEEEEEEEECSSEE-EEECSSSSCEEEEETTTCCSC-----TTTCCTTCEEEEC
T ss_pred CCCceeEEEEEEECCcc-EEecCCCCceEEEEEhhhccc-----cCcCCCCCEEEEE
Confidence 46788999999874 44 66654 58999999998754 2568899999754
No 115
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=63.96 E-value=19 Score=24.99 Aligned_cols=49 Identities=12% Similarity=0.143 Sum_probs=34.5
Q ss_pred EEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 103 VKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 103 v~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
.+|+|...++ +|. +.-.++.+-|+|.+.+.....+. +..||.|++.+..
T Consensus 2 ~~G~Vk~fn~~kGfGF-I~~~~g~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~~ 53 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGF-IEREGDTDVFVHYTAINAKGFRT-----LNEGDIVTFDVEP 53 (73)
T ss_dssp EEEEEEEEETTTTEEE-EECTTSCCEEEEGGGBCSSSCSS-----CCTTCEEEEEEEC
T ss_pred CCEEEEEEECCCCEEE-EecCCCCcEEEEhhhccccCCCC-----CCCCCEEEEEEEE
Confidence 3699999875 344 44443488999999986542222 6789999998843
No 116
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=61.70 E-value=60 Score=27.38 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCCEEEEEEEEEECCe-EEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhH
Q 021034 99 LGTKVKGTVFCTDNRG-ALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G-~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~ 176 (318)
-|.-..|.|.++.+++ +.|.+ .+|....+|.+++..- +.+..-.+.|-+.|.+-++.+.++. - ..+
T Consensus 79 d~~WyRa~V~~~~~~~~~~V~~vDyGn~~~v~~~~l~~l----~~~f~~lP~qA~~c~L~~v~p~~~~-------w-~~e 146 (226)
T 4b9x_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI----LPQFLLLPFQGMQCWLVDIQPPNKH-------W-TKE 146 (226)
T ss_dssp TTEEEEEEEEEECSSSEEEEECTTTCCEEEEEGGGEECC----CGGGSSSCBCCEEEEESSEECSSSS-------C-CHH
T ss_pred CCeEEEEEEEEECCCCeEEEEEEecCCEEEEEHHHhccC----hHHHcccccceEEEEEecEECCCCC-------C-CHH
Confidence 3556688899987664 55555 4456788998887532 1222134688899999777664431 1 123
Q ss_pred HHHHHhhhcCCCcEEEEEEEEEEcCeEEEEE
Q 021034 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207 (318)
Q Consensus 177 ~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i 207 (318)
....++++. .|..+.++|.+...+++.|++
T Consensus 147 a~~~f~~l~-~~k~l~~~V~~~~~~~~~V~L 176 (226)
T 4b9x_A 147 ATARFQACV-VGLKLQARVVEITANGVGVEL 176 (226)
T ss_dssp HHHHHHHHH-TTCCEEEEEEEECSSCEEEEE
T ss_pred HHHHHHHHH-CCCeEEEEEEEEeCCeEEEEE
Confidence 445566665 677899999999998888876
No 117
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=58.54 E-value=77 Score=26.13 Aligned_cols=96 Identities=14% Similarity=0.062 Sum_probs=62.9
Q ss_pred CCCEEEEEEEEEECCe-EEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhH
Q 021034 99 LGTKVKGTVFCTDNRG-ALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYEL 176 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G-~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~ 176 (318)
-|.-..|.|.++.+++ +.|.+ ..|....+|.+++..- +.+..-.+.|-+.|.+-++.+.++. - ..+
T Consensus 79 d~~wyRa~V~~~~~~~~~~V~~vDyG~~~~v~~~~l~~l----~~~f~~lP~qA~~c~L~~v~p~~~~-------w-~~e 146 (201)
T 4b9w_A 79 DGNWYRALVKEILPSGNVKVHFVDYGNVEEVTTDQLQAI----LPQFLLLPFQGMQCWLVDIQPPNKH-------W-TKE 146 (201)
T ss_dssp TTEEEEEEEEEECTTSCEEEEETTTCCEEEECGGGEEEC----CGGGGSSCBCCEEEEESSEECSSSS-------C-CHH
T ss_pred CCeEEEEEEEEECCCCeEEEEEEccCCEEEEEHHHhccC----hHhHcccchhhEEEEEcCEEcCCCC-------C-CHH
Confidence 3556788899987664 55555 4456788898887532 1222124678899998777654331 1 123
Q ss_pred HHHHHhhhcCCCcEEEEEEEEEEcCeEEEEE
Q 021034 177 AWERCRQLQSEDVVVKGKVVGANKGGVVAEV 207 (318)
Q Consensus 177 ~~~~~~~~~~~G~iv~g~V~~v~~~G~~V~i 207 (318)
..+.++++. .|..+.++|.+...+++.|++
T Consensus 147 a~~~f~~l~-~~k~l~~~V~~~~~~~~~V~L 176 (201)
T 4b9w_A 147 ATARFQACV-VGLKLQARVVEITANGVGVEL 176 (201)
T ss_dssp HHHHHHHHH-TTCCEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHHH-CCCEEEEEEEEEeCCEEEEEE
Confidence 445566655 677899999999998887775
No 118
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=56.56 E-value=33 Score=27.26 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=36.7
Q ss_pred CEEEEEEEEEEC---CeEEEEe-------CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 101 TKVKGTVFCTDN---RGALVDI-------TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 101 ~iv~G~V~~i~~---~G~~V~i-------~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
...+|+|.-++. +|.+..- .++.+.|+|.+.+.....+. +..|+.|++.+..
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~g~~~-----l~eG~~V~f~~~~ 69 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRS-----LKEGEAVEFTFKK 69 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSSSSCC-----CCTTCEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhcccCCcc-----CCCCCEEEEEEEE
Confidence 356899999975 3555432 24578999999986543322 6789999999855
No 119
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=54.50 E-value=25 Score=25.84 Aligned_cols=52 Identities=15% Similarity=0.233 Sum_probs=37.3
Q ss_pred CCCEEEEEEEEEECCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEE
Q 021034 99 LGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl 156 (318)
......|+|....++.=|+.- .++-+-|+|.+.+... .+ . +..||.|++.+.
T Consensus 15 ~~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~-~~----~-L~~G~~V~F~v~ 67 (97)
T 2ytx_A 15 KQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGD-LE----T-LQPGDDVEFTIK 67 (97)
T ss_dssp CCCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSC-TT----S-CCSCCEEEEEEC
T ss_pred CCcceeEEEEEEeCCceEEecCCCCceEEEEehHhccc-cC----C-CCCCCEEEEEEE
Confidence 356789999988443335554 4457999999999654 22 2 789999999883
No 120
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=53.22 E-value=53 Score=23.81 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=35.0
Q ss_pred EEEEEEEEEEC---CeEEEE-------eCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 102 KVKGTVFCTDN---RGALVD-------ITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 102 iv~G~V~~i~~---~G~~V~-------i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
..+|+|.-++. +|.+.. ..++.+-|+|.+.+.....+. +..||.|++.+..
T Consensus 8 r~tG~VKWFn~~KGfGFI~~~~~~~~p~dgg~DvFVH~s~i~~~g~~~-----L~eG~~V~f~v~~ 68 (90)
T 3ulj_A 8 RGSGHCKWFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGFRS-----LKEGEPVEFTFKK 68 (90)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCCSSSCC-----CCTTCEEEEEEEE
T ss_pred ccceEEEEeeCCCCeEEeEecCcCcCCCCCCccEEEEeehhcccCCCc-----cCCCCEEEEEEEE
Confidence 56799998875 344432 223468899999986543222 6789999998854
No 121
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=52.46 E-value=17 Score=26.86 Aligned_cols=47 Identities=28% Similarity=0.396 Sum_probs=35.2
Q ss_pred CeEEEEEEEEEEcceE-EEEEC--CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 265 GSVVIGTVQSLKPYGA-FIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 265 G~~v~G~V~~i~~~G~-fV~i~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
....+|+|+.. ..|. |+.-. +-+-|+|.|.+... ...+..||.|+..
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~-----~~~L~~G~~V~F~ 65 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGD-----LETLQPGDDVEFT 65 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSC-----TTSCCSCCEEEEE
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhccc-----cCCCCCCCEEEEE
Confidence 56788999988 5444 66655 47899999998754 3568899999764
No 122
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=52.42 E-value=46 Score=22.10 Aligned_cols=35 Identities=20% Similarity=0.129 Sum_probs=30.2
Q ss_pred CCCEEEEEEEEEECC--eEEEEeCCCeEEEEeCcccc
Q 021034 99 LGTKVKGTVFCTDNR--GALVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~--G~~V~i~~~~~g~lp~sEls 133 (318)
-|..+.|||+++.+. -++|.++.++.-.+...++.
T Consensus 16 DG~fYlGtI~~V~~~~~~clV~F~D~s~~W~~~kdi~ 52 (58)
T 4hcz_A 16 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 52 (58)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEEeEEEEEEecCCCEEEEEEcCCCeEEEEhHHcc
Confidence 588999999999876 69999999999888877764
No 123
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=52.01 E-value=94 Score=25.97 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=42.6
Q ss_pred EEEEEEEEEECCeEEEEeCC-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHHH
Q 021034 102 KVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAW 178 (318)
Q Consensus 102 iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~~ 178 (318)
.+.|+|..+.++.++++.+| +.+-++|.+-++. . ...|+.+..++...-.++. ..++--....++.|
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~~--------l-~~~g~~v~l~~~~~vReda-~~l~gf~~~~ek~~ 71 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYE--------L-PEAGQEAIVFTHFVVREDA-QLLYGFNNKQERTL 71 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTT--------C-CCTTSEEEEEEEEEEETTE-EEEEEESSHHHHHH
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHHh--------c-CCCCCeEEEEEEEEEeehh-hhhhccCCHHHHHH
Confidence 57899999999999999965 4555666544321 1 2369999998876654443 33444443333333
No 124
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=51.99 E-value=51 Score=22.15 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=33.2
Q ss_pred EEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEE
Q 021034 104 KGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVII 156 (318)
Q Consensus 104 ~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl 156 (318)
+|+|...++ +|.+ .-.++.+-|+|.+.+.....+. +..||.|++.+.
T Consensus 2 ~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~~~-----l~~G~~V~f~~~ 51 (66)
T 1g6p_A 2 RGKVKWFDSKKGYGFI-TKDEGGDVFVHWSAIEMEGFKT-----LKEGQVVEFEIQ 51 (66)
T ss_dssp CEEEEEEETTTTEEEE-EETTSCBCBBCSSSSCCSSCCC-----CCSSSEEEEEEE
T ss_pred cEEEEEEECCCCEEEE-ecCCCceEEEEhHHccccCCCC-----CCCCCEEEEEEE
Confidence 589999875 3444 4444588999999986532222 678999999884
No 125
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=50.62 E-value=12 Score=26.47 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=36.2
Q ss_pred CEEEEEEEEEECCeEEEEeC-C-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 101 TKVKGTVFCTDNRGALVDIT-A-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 101 ~iv~G~V~~i~~~G~~V~i~-~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
+...|+|....+..=|+.-. + +-+-|+|.+.+. .. . . +..||.|++.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~g-~----~-l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-DG-I----E-LQAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-SS-C----C-CCTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-CC-C----c-CCCCCEEEEEEEE
Confidence 45679999987655555543 3 478999999987 21 1 2 7899999998854
No 126
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=50.53 E-value=1e+02 Score=25.27 Aligned_cols=97 Identities=14% Similarity=-0.025 Sum_probs=63.4
Q ss_pred CCCEEEEEEEEEECCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhhhHH
Q 021034 99 LGTKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELA 177 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~~~~ 177 (318)
-|.-..|+|.++.++.+.|.+ ..|....+|.+++..-. .+..-.+.+.+.|++-.+++..+ ..-..+.
T Consensus 65 d~~wyRa~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~l~----~~~~~~p~~a~~~~Lagv~~p~~-------~~w~~eA 133 (218)
T 2wac_A 65 DNQWYRAKVERVQGSNATVLYIDYGNKETLPTNRLAALP----PAFSSEKPYATEYALALVALPTD-------NEDKEEA 133 (218)
T ss_dssp TCCEEEEEEEEEETTEEEEEETTTCCEEEEEGGGEEECC----GGGSSSCCSEEEEEETTEECCSS-------HHHHHHH
T ss_pred CCeEEEEEEEEecCCeEEEEEEecCCeEEEchHHcccCC----hhhccCCcceeEEEECCEECCCC-------cchHHHH
Confidence 477889999999988887776 44667788888775321 22213478999999988875331 1112234
Q ss_pred HHHHhhhcCCCcEEEEEEEEEEcCe-EEEEE
Q 021034 178 WERCRQLQSEDVVVKGKVVGANKGG-VVAEV 207 (318)
Q Consensus 178 ~~~~~~~~~~G~iv~g~V~~v~~~G-~~V~i 207 (318)
...+.++. .|..+.+.|.....+. ..|.+
T Consensus 134 ~~~l~~lv-~~k~v~~~v~~~d~g~~~~V~L 163 (218)
T 2wac_A 134 LRAFSEDV-LNHKVQLNVELKVTGSPNLATL 163 (218)
T ss_dssp HHHHHHHH-BTCEEEEEEEECCTTSCEEEEE
T ss_pred HHHHHHHh-cCCEEEEEEEEEcCCceEEEEE
Confidence 45566665 4777888888766455 55554
No 127
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=55.91 E-value=3.3 Score=28.74 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=35.7
Q ss_pred EEEEEEEEEEC---CeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 102 KVKGTVFCTDN---RGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 102 iv~G~V~~i~~---~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
.++|+|...++ +|.+-.-.++.+-|+|.+.+.....+ . +..||.|++.+..
T Consensus 4 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~----~-l~~G~~V~f~~~~ 57 (70)
T 2lss_A 4 NIVGKVKWYNSTKNFGFIEQDNGGKDVFVHKSAVDAAGLH----S-LEEGQDVIFDLEE 57 (70)
Confidence 46799988764 46555444568899999998643222 1 6789999988743
No 128
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=49.92 E-value=94 Score=24.59 Aligned_cols=69 Identities=7% Similarity=-0.048 Sum_probs=48.7
Q ss_pred CCEEEEEEEEEECCeEE-EEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 100 GTKVKGTVFCTDNRGAL-VDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 100 G~iv~G~V~~i~~~G~~-V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
-..+.|+|+...+++.| |.+.++..-+.+++-= ++. ..-+..|+.|.|....++..+++|+.-.+..+.
T Consensus 30 ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GK----mRk--~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~dev 99 (143)
T 1d7q_A 30 DGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK----LRK--KVWINTSDIILVGLRDYQDNKADVILKYNADEA 99 (143)
T ss_dssp TTEEEEEEEEECSSSEEEEEETTTEEEEEECCSG----GGG--SCCCCTTCEEEEECSSSSSSCCEEEEEECTTTH
T ss_pred CCEEEEEEEEEcCCCEEEEEeCCCCEEEEEeccc----cee--eEEecCCCEEEEeeccCCCCeEEEEEEeCHHHH
Confidence 44678999999999877 7887777766665421 111 122678999999887777778888776665543
No 129
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=48.13 E-value=74 Score=22.87 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=36.8
Q ss_pred CcEEEEEEEEEEcC-eEEEEEC-CEEEEEeCcccCCcCCcchh-cCCeEeEEEEEE
Q 021034 188 DVVVKGKVVGANKG-GVVAEVE-GLRGFVPFSQISSKSTAEEL-LGKDLPLKFVEV 240 (318)
Q Consensus 188 G~iv~g~V~~v~~~-G~~V~i~-gl~gfip~s~ls~~~~~~~~-vGq~v~~kVl~v 240 (318)
.+..+|+|+..+++ |.+..-+ +-+-|+|.+.+... .+.+ .||.|.+.+..-
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~--~~~L~~G~~V~F~v~~~ 69 (89)
T 1wfq_A 16 ALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN--LQDLKVGDDVEFEVSSD 69 (89)
T ss_dssp CCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC--TTTCCTTCCEEEEEEEC
T ss_pred ccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc--cCCCCCCCEEEEEEEEC
Confidence 45789999999753 4444334 59999999999864 3333 699999987643
No 130
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.11 E-value=65 Score=24.35 Aligned_cols=71 Identities=13% Similarity=-0.018 Sum_probs=46.6
Q ss_pred CCCCCCEEEEEEEEEECCeEE-EEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEe-CCCCeEEEEeeehh
Q 021034 96 NSELGTKVKGTVFCTDNRGAL-VDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN-EADDSLVLSLRMIQ 173 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~-V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd-~~~~~i~lS~k~~~ 173 (318)
.++.|+ +.|+|++..+++.| |.+.++..-+.+++- .+++ ..-++.||.|.|....++ ..+++|+.-.++.+
T Consensus 11 ~p~ege-~~g~V~~~lgn~~f~V~l~nG~~~la~i~G----K~Rk--~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~q 83 (111)
T 2dgy_A 11 VPSNQQ-QIVRVLRTPGNNLHEVETAQGQRFLVSMPS----KYRK--NIWIKRGDFLIVDPIEEGEKVKAEISFVLCKDH 83 (111)
T ss_dssp CCCSSC-EEEEEEECCSSSEEEEECTTSCEEEEECCT----TCCS--CCCCCSSCEEEEEECSSCSSCCEEEEEECCHHH
T ss_pred CCCCCe-EEEEEEEeCCCCEEEEEeCCCCEEEEEech----hhcc--cEEEcCCCEEEEEecccCCcceEEEEEEeCHHH
Confidence 344554 66999999998877 777666665555432 1121 122678999999887666 55677777666543
No 131
>1fr3_A MOP, molybdate/tungstate binding protein; molybdate homeostasis, metal binding protein; 1.50A {Sporomusa ovata} SCOP: b.40.6.1
Probab=48.06 E-value=5.2 Score=26.67 Aligned_cols=46 Identities=22% Similarity=0.316 Sum_probs=27.4
Q ss_pred eEEEEEEEEEEcceEE----EEECCe--EEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 266 SVVIGTVQSLKPYGAF----IDIGGI--NGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 266 ~~v~G~V~~i~~~G~f----V~i~gv--~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
..+.|+|.++...|.. ++++|- ...+.... .. .-.+++||.|.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~v~l~~~~~~l~a~it~~s-----~~--~l~L~~G~~V~~~i 58 (67)
T 1fr3_A 7 NKLEATVKEIVKGTVMAKIVMDYKGTELVAAITIDS-----VA--DLDLVPGDKVTALV 58 (67)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTEEEEEEEEHHH-----HH--HHTCCTTCEEEEEE
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCEEEEEeCHHH-----HH--hCCCCCCCEEEEEE
Confidence 4689999999988743 333332 22232211 11 12489999998864
No 132
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=47.38 E-value=52 Score=22.53 Aligned_cols=46 Identities=22% Similarity=0.380 Sum_probs=33.3
Q ss_pred EEEEEEEEEEc---ceEEEEEC--CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 267 VVIGTVQSLKP---YGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 267 ~v~G~V~~i~~---~G~fV~i~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
..+|+|+...+ || |+.-. +-+-|+|.|.+.... -..+..||.|+..
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~~g----~~~l~~G~~V~f~ 55 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQTNG----FKTLAEGQRVEFE 55 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCCSS----CCCCCTTCEEEEE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHccccc----CcCCCCCCEEEEE
Confidence 46899998864 66 56554 478899999987432 2357899999764
No 133
>1gut_A Mopii, molybdate binding protein II; transport protein; 1.50A {Clostridium pasteurianum} SCOP: b.40.6.1 PDB: 1gun_A 1guo_A 1gus_A 1gug_A
Probab=44.90 E-value=5.8 Score=26.65 Aligned_cols=46 Identities=20% Similarity=0.351 Sum_probs=28.0
Q ss_pred eEEEEEEEEEEcceEE----EEEC-C--eEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 266 SVVIGTVQSLKPYGAF----IDIG-G--INGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 266 ~~v~G~V~~i~~~G~f----V~i~-g--v~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
..+.|+|.++.+.|.. ++++ | +...+..... . +-.+++||.|.+.+
T Consensus 7 N~l~g~V~~i~~~g~~~~V~l~~~~g~~l~a~it~~s~-----~--~l~L~~G~~V~a~i 59 (68)
T 1gut_A 7 NQLKGKVVGLKKGVVTAEVVLEIAGGNKITSIISLDSV-----E--ELGVKEGAELTAVV 59 (68)
T ss_dssp CEEEEEEEEEEECSSEEEEEEEETTSCEEEEEEEHHHH-----H--HHTCCTTCEEEEEC
T ss_pred eEEEEEEEEEEeCCceEEEEEEeCCCCEEEEEeCHHHH-----H--HCCCCCCCEEEEEE
Confidence 3689999999988843 3343 3 3333332111 1 12489999998864
No 134
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A
Probab=44.30 E-value=1.2e+02 Score=25.50 Aligned_cols=62 Identities=11% Similarity=0.190 Sum_probs=40.2
Q ss_pred EEEEEEEEEECCeEEEEeCCCeEEE-EeCcccccccccCccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehh
Q 021034 102 KVKGTVFCTDNRGALVDITAKSSAY-LPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQ 173 (318)
Q Consensus 102 iv~G~V~~i~~~G~~V~i~~~~~g~-lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~ 173 (318)
.+.|+|..+.++.+++++++ + |+ +..+.-.. . . +..|+.+.++..-+..++.....-.....
T Consensus 20 ~l~G~v~~~~~~~~Vi~v~g-V-Gy~v~v~~~t~------~-~-l~~Ge~v~l~t~~~vRED~~~LyGF~~~~ 82 (212)
T 2ztd_A 20 SVRGEVLEVALDHVVIEAAG-V-GYRVNATPATL------A-T-LRQGTEARLITAMIVREDSMTLYGFPDGE 82 (212)
T ss_dssp EEEEEEEEECSSEEEEEETT-E-EEEEECCHHHH------T-T-CCTTSEEEEEEEEEEETTEEEEEEESSHH
T ss_pred EEEEEEEEEECCEEEEEECC-e-eEEEEEChHhH------H-h-cCCCCEEEEEEEEEEecCCcceEecCcHH
Confidence 57899999999999999975 3 43 32221100 0 1 45799999988776666655544444433
No 135
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=44.04 E-value=52 Score=22.61 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=29.2
Q ss_pred CCCEEEEEEEEEECCeEEEEeCCCeEEEEeCccc
Q 021034 99 LGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEA 132 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEl 132 (318)
-|..+.|||+.....-++|.|..+.+-.+...+|
T Consensus 28 DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv~~kdi 61 (69)
T 2xk0_A 28 DGRFYLGTIIDQTSDQYLIRFDDQSEQWCEPDKL 61 (69)
T ss_dssp TSCEEEEEEEEECSSCEEEEETTCCEEEECTTTE
T ss_pred CCCEEEEEEEecCCceEEEEecCCcceeeeHHHH
Confidence 4899999999999999999999888877766555
No 136
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=43.28 E-value=80 Score=28.04 Aligned_cols=54 Identities=17% Similarity=0.153 Sum_probs=42.4
Q ss_pred CCCCCCEEEEEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEE
Q 021034 96 NSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVI 155 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~V 155 (318)
.++.|...+|....-..+++.++..+ .--.+....+.-+.++. ++.|+++.+.+
T Consensus 247 ~~~~g~~~~g~~~~~~~~~~~~~~~~-~~~~~~k~~~~pe~~~~-----l~~~~~~~~~~ 300 (302)
T 2jk8_A 247 VAKEGETYTGTYRGAGLEGFALNVKG-AYIIGNIDHLPPEQLKI-----LKPGDKITFTA 300 (302)
T ss_dssp ECCTTCEEEEEEEEECSSEEEEEBTT-BEEEEEGGGSCHHHHHT-----CCTTCEEEEEC
T ss_pred eccCCCccceEEEecCCCeEEEEeCC-cEEEEECCccCHHHHhc-----cCCCCEEEEEe
Confidence 45789999999999999999999875 56777777775444332 68999999865
No 137
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=40.64 E-value=1.1e+02 Score=22.85 Aligned_cols=46 Identities=17% Similarity=0.108 Sum_probs=31.7
Q ss_pred CCCEEEEEEEEEECC-eEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEEE
Q 021034 99 LGTKVKGTVFCTDNR-GALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEE 152 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~-G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~ 152 (318)
++ ..-|+|.++.++ -++|....+.+-+++++..-+ +++ +++|+.|-
T Consensus 36 ~P-~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~~Vd-----~~~--LkpG~rVa 82 (109)
T 2wg5_A 36 PP-LLVGVVSDILEDGRVVVKSSTGPKFVVNTSQYIN-----EEE--LKPGARVA 82 (109)
T ss_dssp CC-EEEEEEEEECTTSCEEEEETTSCEEEECBCTTSC-----TTT--CCTTCEEE
T ss_pred CC-ceEEEEEEEecCCEEEEEeCCCCEEEEEcccccC-----HHH--CCCCCEEE
Confidence 45 445889888764 478888767788888765422 222 88999975
No 138
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=40.56 E-value=15 Score=26.73 Aligned_cols=50 Identities=8% Similarity=0.098 Sum_probs=36.3
Q ss_pred CEEEEEEEEEECCeEEEEe-CCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEE
Q 021034 101 TKVKGTVFCTDNRGALVDI-TAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIG 157 (318)
Q Consensus 101 ~iv~G~V~~i~~~G~~V~i-~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~ 157 (318)
+..+|+|....+..=|+.- .++-+-|+|.+.+... .. +.+||.|++.+..
T Consensus 7 ~r~~G~Vk~f~KGfGFI~~~~gg~DvFvH~s~i~~~------~~-L~~G~~V~F~v~~ 57 (89)
T 1x65_A 7 GREMGVIAAMRDGFGFIKCVDRDVRMFFHFSEILDG------NQ-LHIADEVEFTVVP 57 (89)
T ss_dssp CCEEEEEEECCTTBCEEEESSSSSCCCCBTTGGGGS------CC-CCTTCCEEECCBC
T ss_pred cceeEEEEEEeCCcceeecCCCCccEEEEhhhccCC------CC-CCCCCEEEEEEEe
Confidence 4678999999764334544 4457899999998641 12 7899999998843
No 139
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=39.63 E-value=42 Score=26.76 Aligned_cols=48 Identities=27% Similarity=0.393 Sum_probs=35.9
Q ss_pred ccCeEEEEEEEEEEc---ceEEEEEC--CeEEEEecCCcCcccccCcccccCCCCEEEEE
Q 021034 263 GIGSVVIGTVQSLKP---YGAFIDIG--GINGLLHVSQISHDRVADIATVLQPGDTLKVC 317 (318)
Q Consensus 263 ~~G~~v~G~V~~i~~---~G~fV~i~--gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~ 317 (318)
..|...+|+|+.... || ||.-. +-+-|+|.+.+... ..+..||.|+-.
T Consensus 58 ~~g~m~~GtVKwFn~~KGfG-FI~~ddGg~DVFVH~Sai~~~------~~L~eGq~V~Fe 110 (147)
T 3aqq_A 58 SQGPVYKGVCKCFCRSKGHG-FITPADGGPDIFLHISDVEGE------YVPVEGDEVTYK 110 (147)
T ss_dssp HHSCCEEEEEEEEETTTTEE-EEEESSSCSCEEEEGGGEESS------BCCCTTCEEEEE
T ss_pred ccCCccceEEEEEeCCCCeE-EeccCCCCccEEEEeeeecCC------CcCCCCCEEEEE
Confidence 458889999998863 55 55554 48899999998532 368899998653
No 140
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=38.86 E-value=86 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.093 Sum_probs=34.5
Q ss_pred CCCCCCEEEEEEEEEECCeE-EEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEe
Q 021034 96 NSELGTKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~-~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd 159 (318)
.++.|+.++.+|.+....|- +..+. +..-|+|. --+|+++.++|....
T Consensus 10 ~~~~~~~~~~~I~~l~~~G~Gva~~~-g~~vfV~~---------------alPGE~V~v~i~k~k 58 (68)
T 1yez_A 10 PVEEGEVYDVTIQDIARQGDGIARIE-GFVIFVPG---------------TKVGDEVRIKVERVL 58 (68)
T ss_dssp SCCTTEEEEEECCEEETTTEEEEEET-TEEEEEES---------------CCTTCEEEEEEEEEC
T ss_pred ccCCCCEEEEEEEEcCCCccEEEEEC-CEEEECcC---------------CCCCCEEEEEEEEec
Confidence 45789999999998887654 34444 35567664 348999999998754
No 141
>1cuk_A RUVA protein; DNA repair, SOS response, DNA-binding, DNA recombination; 1.90A {Escherichia coli} SCOP: a.5.1.1 a.60.2.1 b.40.4.2 PDB: 1hjp_A 1bdx_A* 1c7y_A 1d8l_A
Probab=38.47 E-value=97 Score=25.89 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=38.5
Q ss_pred EEEEEEEEEEcCeEEEEEC--CEEEEEeCcccCCcCCcchhcCCeEeEEE-EEEecccCeEee
Q 021034 190 VVKGKVVGANKGGVVAEVE--GLRGFVPFSQISSKSTAEELLGKDLPLKF-VEVDEEQSRLVL 249 (318)
Q Consensus 190 iv~g~V~~v~~~G~~V~i~--gl~gfip~s~ls~~~~~~~~vGq~v~~kV-l~vd~~~~~i~l 249 (318)
.++|+|..+.+..++++++ |..-++|.+.++.-.. +|+.+...+ ..+.++..++..
T Consensus 4 ~l~G~l~~~~~~~vvidv~GVGY~v~~~~~t~~~l~~----~g~~v~l~~~~~vReda~~l~g 62 (203)
T 1cuk_A 4 RLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPE----AGQEAIVFTHFVVREDAQLLYG 62 (203)
T ss_dssp EEEEEEEEEETTEEEEEETTEEEEEECCHHHHTTCCC----TTSEEEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHHhcCC----CCCeEEEEEEEEEeehhhhhhc
Confidence 4799999999999999997 5667776554432111 588888884 455555555443
No 142
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=38.32 E-value=93 Score=21.20 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.8
Q ss_pred CCCEEEEEEEEEEC--CeEEEEeCCCeEEEEeCccc
Q 021034 99 LGTKVKGTVFCTDN--RGALVDITAKSSAYLPTQEA 132 (318)
Q Consensus 99 ~G~iv~G~V~~i~~--~G~~V~i~~~~~g~lp~sEl 132 (318)
-|..+.|+|.+|.. .-|+|.++.++.-.+.-.++
T Consensus 26 DGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi 61 (66)
T 2eqj_A 26 DGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp TSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred cCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecc
Confidence 48889999999996 56899999888877766554
No 143
>1ixr_A Holliday junction DNA helicase RUVA; heterooligomeric complex, octameric RUVA, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.30A {Thermus thermophilus} SCOP: a.60.2.1 b.40.4.2
Probab=35.00 E-value=78 Score=26.24 Aligned_cols=49 Identities=12% Similarity=-0.027 Sum_probs=35.0
Q ss_pred EEEEEEEEEECCeEEEEeCC-CeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEeC
Q 021034 102 KVKGTVFCTDNRGALVDITA-KSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENE 160 (318)
Q Consensus 102 iv~G~V~~i~~~G~~V~i~~-~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd~ 160 (318)
.+.|+|..+.++.++++.+| +.+-++|.+-++ . +..|+.+..++...-.
T Consensus 4 ~l~G~l~~~~~~~~vidv~GvGY~v~~~~~t~~--------~--l~~g~~v~l~~~~~vR 53 (191)
T 1ixr_A 4 YLRGLVLKKEAGGFVLLAGGVGFFLQAPTPFLQ--------A--LEEGKEVGVHTHLLLK 53 (191)
T ss_dssp EEEEEEEEECSSEEEEECSSEEEEEECCHHHHH--------H--CCTTSEEEEEECCCCC
T ss_pred eEEEEEEEEeCCEEEEEECCEEEEEEcCHHHHH--------h--CCCCCeEEEEEEehhh
Confidence 57899999999999999964 355566654332 1 2279999988866533
No 144
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=34.78 E-value=86 Score=22.01 Aligned_cols=35 Identities=20% Similarity=0.138 Sum_probs=29.5
Q ss_pred CCCEEEEEEEEEEC--CeEEEEeCCCeEEEEeCcccc
Q 021034 99 LGTKVKGTVFCTDN--RGALVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 99 ~G~iv~G~V~~i~~--~G~~V~i~~~~~g~lp~sEls 133 (318)
-|-.+.|||+++.. .-|+|.|+.+.+-.++-.++.
T Consensus 39 DGlfYLGTI~kV~~~~e~ClV~F~D~S~~W~~~kdi~ 75 (79)
T 2m0o_A 39 DGLLYLGTIKKVDSAREVCLVQFEDDSQFLVLWKDIS 75 (79)
T ss_dssp TSCCCEEEEEEEETTTTEEEEEETTSCEEEEETTTBC
T ss_pred CCCEEeEEEEEeccCCCEEEEEEcCCCeEEEEeeccc
Confidence 48888999999985 569999999999888877764
No 145
>2jk8_A BEPA, putative cell filamentation protein (BEPA protein; T4SS, OB fold, FIC domain, substrate protein, protein transl cell adhesion; 2.80A {Bartonella henselae} PDB: 2vy3_A 2vza_A*
Probab=34.70 E-value=68 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.335 Sum_probs=44.6
Q ss_pred cccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCcccccCcccccCCCCEEEEEC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISHDRVADIATVLQPGDTLKVCL 318 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~~~~~~~~~~~~~Gq~V~v~V 318 (318)
.++|..+.|+...-.+.++-++..+..-+|++.+++.+.. ..++.||+++.++
T Consensus 248 ~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~pe~~----~~l~~~~~~~~~~ 300 (302)
T 2jk8_A 248 AKEGETYTGTYRGAGLEGFALNVKGAYIIGNIDHLPPEQL----KILKPGDKITFTA 300 (302)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEBTTBEEEEEGGGSCHHHH----HTCCTTCEEEEEC
T ss_pred ccCCCccceEEEecCCCeEEEEeCCcEEEEECCccCHHHH----hccCCCCEEEEEe
Confidence 4579999999999999999999888888999999976653 3478999998753
No 146
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=34.16 E-value=1.1e+02 Score=20.67 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=33.3
Q ss_pred CCCCCCEEEEEEEEEECCeE-EEEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEe
Q 021034 96 NSELGTKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN 159 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~-~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd 159 (318)
..+.|+.++.+|.+....|- +..+.+ ..-|+|. --+|+++.++|....
T Consensus 12 ~~~~~~~~~v~I~~l~~~G~Gva~~~g-~~vfV~~---------------alPGE~V~v~i~k~k 60 (70)
T 1yvc_A 12 PVEAGKEYEVTIEDMGKGGDGIARIDG-FVVFVPN---------------AEKGSVINVKVTAVK 60 (70)
T ss_dssp SSCTTCEEEEECCEECTTSCEEEEETT-EEEEETT---------------CCTTCEEEEEEEEEC
T ss_pred cccCCCEEEEEEEEcCCCccEEEEECC-EEEEccC---------------CCCCCEEEEEEEEee
Confidence 45789999999998876543 334443 4456553 348999999998754
No 147
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=29.24 E-value=1.5e+02 Score=22.70 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=37.1
Q ss_pred cCCeEeEEEEEEecccCeEeeehhhhhhhhHhhcccCeEEEEEEEEEE-----cceEEEEEC-CeEEEEec
Q 021034 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLK-----PYGAFIDIG-GINGLLHV 293 (318)
Q Consensus 229 vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~~~l~~G~~v~G~V~~i~-----~~G~fV~i~-gv~Glv~~ 293 (318)
+||.|.+-|.+..++ ..++.|+++++.|.+.. +.|.++.|. +---|+-.
T Consensus 35 iGD~IvvsVK~~~p~----------------~~vKkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~ 89 (122)
T 3v2d_O 35 VGDVIVASVKEAIPR----------------GAVKEGDVVKAVVVRTKKEIKRPDGSAIRFDDNAAVIINN 89 (122)
T ss_dssp TTCEEEEEEEEECSS----------------SSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEECT
T ss_pred CCCEEEEEEEEcCCC----------------CccccCCEEEEEEEEeCCccCCCCCcEEEcCCcEEEEECC
Confidence 788888888766543 23778999999998654 589999999 76666644
No 148
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=27.97 E-value=1.4e+02 Score=20.69 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=29.8
Q ss_pred CCCcEEEEEEEEEEcCeEEEEECCEEEEEeCcccC
Q 021034 186 SEDVVVKGKVVGANKGGVVAEVEGLRGFVPFSQIS 220 (318)
Q Consensus 186 ~~G~iv~g~V~~v~~~G~~V~i~gl~gfip~s~ls 220 (318)
..|..+.|+|.+..++-++++.+|-.-++....+|
T Consensus 33 ~NG~~l~G~I~~fD~ftVll~~~g~qqliYKhAIS 67 (71)
T 2qtx_A 33 RNGEVLDAEVTGVSNYEIMVKVGDRNLLVFKHAID 67 (71)
T ss_dssp TTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEE
T ss_pred eCCeEEEEEEEEEcceEEEEEeCCceEEEEeeeeE
Confidence 47999999999999999999988877788766554
No 149
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=27.80 E-value=1.7e+02 Score=20.88 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=32.5
Q ss_pred eEeEEEEEEecccCeEeeehhhh--hh-----------h--hHhhcccCeEEEEEEEEE
Q 021034 232 DLPLKFVEVDEEQSRLVLSNRKA--MA-----------D--SQAQLGIGSVVIGTVQSL 275 (318)
Q Consensus 232 ~v~~kVl~vd~~~~~i~lS~K~~--l~-----------~--~~~~l~~G~~v~G~V~~i 275 (318)
.....|..+|.+.++|.|+.-+. +. + ....+++|+.|.=.+...
T Consensus 17 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 75 (88)
T 2vb2_X 17 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 75 (88)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEecCCcccCCCCceEEEEEcCChhhhhcCCCCCEEEEEEEEe
Confidence 36678999999999999987553 11 1 136899999999777644
No 150
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=27.76 E-value=1.7e+02 Score=23.02 Aligned_cols=51 Identities=18% Similarity=0.138 Sum_probs=36.0
Q ss_pred cEEEEEEEEEEc---CeEEEEE--------CCEEEEEeCcccCCcCCcchh-cCCeEeEEEEEE
Q 021034 189 VVVKGKVVGANK---GGVVAEV--------EGLRGFVPFSQISSKSTAEEL-LGKDLPLKFVEV 240 (318)
Q Consensus 189 ~iv~g~V~~v~~---~G~~V~i--------~gl~gfip~s~ls~~~~~~~~-vGq~v~~kVl~v 240 (318)
...+|+|+..+. +|++..- ++-+.|+|.+.|... .++.+ .|+.|.+.+..-
T Consensus 8 ~~~~G~Vkwfn~~kGfGFI~~~~~~g~p~~~g~DvFvH~s~i~~~-g~~~l~eG~~V~f~~~~g 70 (148)
T 3ts2_A 8 LHGAGICKWFNVRMGFGFLSMTARAGVALDPPVDVFVHQSKLHME-GFRSLKEGEAVEFTFKKS 70 (148)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEEEGGGBCSS-SSCCCCTTCEEEEEEEEE
T ss_pred ccceeEEEEEECCCCeeEEeeCccccccCCCCccEEEEhHHhccc-CCccCCCCCEEEEEEEEc
Confidence 357899999963 4666543 367999999998643 12333 699999987654
No 151
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=26.40 E-value=1.2e+02 Score=21.28 Aligned_cols=49 Identities=12% Similarity=0.131 Sum_probs=27.9
Q ss_pred EEEEEEEEECCeEEEEeCCCeEEEEeCccccc-----c-cccCccc-cCcCCCCEEEEEEEEE
Q 021034 103 VKGTVFCTDNRGALVDITAKSSAYLPTQEACI-----H-KIKHVEE-AGIVPGLKEEFVIIGE 158 (318)
Q Consensus 103 v~G~V~~i~~~G~~V~i~~~~~g~lp~sEls~-----~-~~~~~~~-~~~~~G~~v~v~Vl~v 158 (318)
+.|+|.+++...+.++=+ |+.++.+ . .+.++.. ..+++||.|.+.+...
T Consensus 6 ~~G~V~~vd~~~iTi~H~-------pI~~l~wPaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 61 (82)
T 2l55_A 6 AVGRIQSIGERSLIIAHE-------AIPSAQWGAMTMEFAAPPAGLPQGLKAGDRVAFSFRLD 61 (82)
T ss_dssp EEEEEEECCSSEEEEEEC-------CCTTTTCCCEEEEEECCTTCCCSSCSTTCEEEEEEEEE
T ss_pred EeEEEEEEccccEEEecC-------CccccCCCceEEEEEcCChhHhhcCCCCCEEEEEEEEC
Confidence 579999999887333322 2222221 1 1111111 1289999999998654
No 152
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=26.03 E-value=2.2e+02 Score=21.83 Aligned_cols=50 Identities=22% Similarity=0.295 Sum_probs=37.8
Q ss_pred cCCeEeEEEEEEecccCeEeeehhhhhhhhHhhcccCeEEEEEEEEEE-----cceEEEEEC-CeEEEEecC
Q 021034 229 LGKDLPLKFVEVDEEQSRLVLSNRKAMADSQAQLGIGSVVIGTVQSLK-----PYGAFIDIG-GINGLLHVS 294 (318)
Q Consensus 229 vGq~v~~kVl~vd~~~~~i~lS~K~~l~~~~~~l~~G~~v~G~V~~i~-----~~G~fV~i~-gv~Glv~~s 294 (318)
+||.|.+-|.+..++ ..++.|+++.+.|.+.. +.|.++.|. +---|+-..
T Consensus 35 iGD~IvvsVK~~~p~----------------~~vkkg~v~~AVIVRtkk~~rR~dG~~i~FddNa~Vlin~~ 90 (122)
T 3r8s_K 35 VGDIIKITIKEAIPR----------------GKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNN 90 (122)
T ss_dssp TTCEEEEEEEEECTT----------------SSSCTTCEEEEEEEECSSCEECTTSCEEEESSCEEEEEETT
T ss_pred CCCEEEEEEEEcCCC----------------CccccCCEEEEEEEEeCCcCCCCCCcEEEcCCceEEEEeCC
Confidence 788888877765543 24677999999998654 589999999 766666654
No 153
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=25.92 E-value=1.7e+02 Score=20.38 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=32.3
Q ss_pred eEeEEEEEEecccCeEeeehhhh--hh-----------h--hHhhcccCeEEEEEEEEE
Q 021034 232 DLPLKFVEVDEEQSRLVLSNRKA--MA-----------D--SQAQLGIGSVVIGTVQSL 275 (318)
Q Consensus 232 ~v~~kVl~vd~~~~~i~lS~K~~--l~-----------~--~~~~l~~G~~v~G~V~~i 275 (318)
.....|..+|.+.+.|.|++-+. +. + ....+++|+.|+=.+...
T Consensus 9 ~~~G~V~~id~~~~~iTi~H~pI~~l~wpaMTM~F~v~~~~~l~~lk~Gd~V~F~~~~~ 67 (80)
T 2qcp_X 9 SATGVVKGIDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQ 67 (80)
T ss_dssp EEEEEEEEEETTTTEEEEEECCBGGGTBCSEEEEEECCTTCEECCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEcCCCCEEEEEcCCcccCCCCceEEEEEccChhhhhcCCCCCEEEEEEEEe
Confidence 35678999999999999997553 11 1 136899999999777644
No 154
>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A
Probab=24.91 E-value=1.1e+02 Score=20.21 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEEEEEECCeEE-EEe-CCCeEEEEeCccc
Q 021034 96 NSELGTKVKGTVFCTDNRGAL-VDI-TAKSSAYLPTQEA 132 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G~~-V~i-~~~~~g~lp~sEl 132 (318)
.++.|+++. |.+..++|.+ ... .++..|++|.+-+
T Consensus 24 s~~~Gd~i~--v~~~~~~gWw~g~~~~~g~~G~~P~nyV 60 (65)
T 2lj0_A 24 ELRDGDIVD--VMEKCDDGWFVGTSRRTKQFGTFPGNYV 60 (65)
T ss_dssp CBCTTCEEE--EEEECTTSEEEEEETTTCCEEEEETTSE
T ss_pred CCCCCCEEE--EeEeCCCCEEEEEECCCCCEEEEehhHe
Confidence 678999995 6666555544 454 3468899998754
No 155
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=24.32 E-value=1.5e+02 Score=20.42 Aligned_cols=36 Identities=25% Similarity=0.371 Sum_probs=29.7
Q ss_pred cccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcC
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQIS 297 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls 297 (318)
|.-|..++|.|.+..+|-+.++..|-.=|+.+.-+|
T Consensus 32 L~NG~~l~G~I~~fD~ftVll~~~g~qqliYKhAIS 67 (71)
T 2qtx_A 32 LRNGEVLDAEVTGVSNYEIMVKVGDRNLLVFKHAID 67 (71)
T ss_dssp ETTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEE
T ss_pred EeCCeEEEEEEEEEcceEEEEEeCCceEEEEeeeeE
Confidence 345999999999999999999988777788776554
No 156
>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=24.24 E-value=1.4e+02 Score=21.69 Aligned_cols=38 Identities=16% Similarity=0.084 Sum_probs=28.3
Q ss_pred cCCCCCCEEEEEEEEEEC----CeEEEEeCCCeEEEEeCccccc
Q 021034 95 FNSELGTKVKGTVFCTDN----RGALVDITAKSSAYLPTQEACI 134 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~----~G~~V~i~~~~~g~lp~sEls~ 134 (318)
-.+..|++| +.+.+.++ ...+|+- ++..||+|.+.+.-
T Consensus 34 l~l~~GdlV-AVl~k~Dp~Gn~srW~Vdt-gg~~GyvPs~yLe~ 75 (92)
T 1ug1_A 34 VSLLEGDLV-GVIKKKDPMGSQNRWLIDN-GVTKGFVYSSFLKP 75 (92)
T ss_dssp CCCCTTCEE-EEEESCCTTSCSSEEEEEC-SSSEEEEEGGGEEE
T ss_pred eeecCCCEE-EEEecCCCCCCCcceEEEC-CCcEEeeEhhhceE
Confidence 357789988 45666644 4678988 46999999988864
No 157
>3ddy_A Lumazine protein, LUMP; luminescent bacteria, lumazine PR riboflavin synthase, luminescence, luminescent protein; HET: RBF; 2.50A {Photobacterium leiognathi}
Probab=23.91 E-value=3e+02 Score=22.55 Aligned_cols=128 Identities=10% Similarity=0.009 Sum_probs=63.2
Q ss_pred CCCCCCEEE-----EEEEEEECCeEEEEeCCCeEEEEeCcccccccccCccccCcCCCCEE-----------EEEEEEEe
Q 021034 96 NSELGTKVK-----GTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKE-----------EFVIIGEN 159 (318)
Q Consensus 96 ~~~~G~iv~-----G~V~~i~~~G~~V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v-----------~v~Vl~vd 159 (318)
+++.|+-+. -||+++.++...+++ ...-..=-..++.....-+.+.. ++.|+++ .+.|+++.
T Consensus 35 ~~~~GdSIAvnGvCLTV~~~~~~~f~vdv-~ETl~~T~Lg~l~~G~~VNLEra-l~~~~rlgGH~vsGHVdg~g~i~~i~ 112 (186)
T 3ddy_A 35 LVDVDTVMLVNGCSNTVVRILGDMVYFDI-DQALGTTTFDGLKEGDQVNLEIH-PKFGEVVGRGGLTGNIKGTALVAAIE 112 (186)
T ss_dssp GCCTTCEEEETTEEEEEEEEETTEEEEEE-CTTTTTSSGGGCCTTCEEEEECC-C---------CBCSCCCEEEEEEEEE
T ss_pred cCCCCCeEEEeeEEEEEEEEcCCEEEEEh-HHhhhhCchhhcCCCCEEEECCC-CCCCCccCCeeEEEEEeEEEEEEEEE
Confidence 567777763 388999988888888 53210000011110000111111 3333332 23567777
Q ss_pred CCCCeEEEEeeehhhhHHHHHHhhhcCCCcE----EEEEEEEEEcCeEEEEECCEEEEEeCcccCCcCCcchh-cCCeEe
Q 021034 160 EADDSLVLSLRMIQYELAWERCRQLQSEDVV----VKGKVVGANKGGVVAEVEGLRGFVPFSQISSKSTAEEL-LGKDLP 234 (318)
Q Consensus 160 ~~~~~i~lS~k~~~~~~~~~~~~~~~~~G~i----v~g~V~~v~~~G~~V~i~gl~gfip~s~ls~~~~~~~~-vGq~v~ 234 (318)
+.++...+..+-+... .......|.+ ++-+|.++.+..+.|.+ +|...-. .++..+ +|+.|+
T Consensus 113 ~~~~~~~~~i~~p~~l-----~~~i~~KgSIavdGvSLTV~~v~~~~f~v~l------Ip~Tl~~--T~l~~~~~Gd~VN 179 (186)
T 3ddy_A 113 ENDAGFSVLIDIPKGL-----AENLTVKDDIGIDGISLPITDMSDSIITLNY------SRDLLAS--TNIASLAKDVKVN 179 (186)
T ss_dssp CCSSEEEEEEECCTTT-----CSCCCTTCEEEETTEEEECCEEETTEEEEEE------EGGGGGT--SSGGGCCTTCEEE
T ss_pred ECCCeEEEEEEcCHHH-----hhccccCcEEEEEeEEEEEEeecCCEEEEEE------cHHHHhh--cccccCccCCEEE
Confidence 7777666666654321 1222334543 45566666665555544 7744322 344444 799988
Q ss_pred EEEE
Q 021034 235 LKFV 238 (318)
Q Consensus 235 ~kVl 238 (318)
.-++
T Consensus 180 lE~~ 183 (186)
T 3ddy_A 180 VEIL 183 (186)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 7653
No 158
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.53 E-value=1.8e+02 Score=19.33 Aligned_cols=48 Identities=27% Similarity=0.402 Sum_probs=33.5
Q ss_pred EEEEEEEEEc---CeEEEEECCEEEEEeCcccCCcCCcchh-cCCeEeEEEEE
Q 021034 191 VKGKVVGANK---GGVVAEVEGLRGFVPFSQISSKSTAEEL-LGKDLPLKFVE 239 (318)
Q Consensus 191 v~g~V~~v~~---~G~~V~i~gl~gfip~s~ls~~~~~~~~-vGq~v~~kVl~ 239 (318)
.+|+|+..+. +|.+..-+|-+-|+|.|.+... ..+.+ .||.|.+.+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~~-g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQGE-GFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCSS-SCCCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHcccc-CCCCCCCCCEEEEEEEE
Confidence 3689999863 3555444478899999999853 12223 69999988754
No 159
>2cs7_A Pneumococcal histidine triad A protein; PHTA, pneumococcal histidine triad protein, structural genomics, unknown function; 1.20A {Streptococcus pneumoniae} SCOP: d.9.2.1
Probab=22.25 E-value=84 Score=20.62 Aligned_cols=29 Identities=7% Similarity=0.240 Sum_probs=24.8
Q ss_pred EEEEEEcCeEEEEECCEEEEEeCcccCCc
Q 021034 194 KVVGANKGGVVAEVEGLRGFVPFSQISSK 222 (318)
Q Consensus 194 ~V~~v~~~G~~V~i~gl~gfip~s~ls~~ 222 (318)
.|++.+..|++|.-++---|||.++|+..
T Consensus 16 dIvs~~~~gyvv~HGdH~HyIpk~~Ls~~ 44 (55)
T 2cs7_A 16 DIIEDTGDAYIVPHGDHYHYIPKNELSAS 44 (55)
T ss_dssp GCCEECSSEEEEEETTEEEEEEGGGSCHH
T ss_pred HheecCCCeEEEecCCeEEEeEhHHCCHH
Confidence 35677889999999999999999999853
No 160
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=21.58 E-value=51 Score=22.72 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=13.0
Q ss_pred ccCcccccCCCCEEEE
Q 021034 301 VADIATVLQPGDTLKV 316 (318)
Q Consensus 301 ~~~~~~~~~~Gq~V~v 316 (318)
...+.+.|++||.|+|
T Consensus 11 ~~~LrK~F~~GDHVkV 26 (69)
T 2do3_A 11 AQELRKYFKMGDHVKV 26 (69)
T ss_dssp CCCCCSSCCTTCEEEE
T ss_pred HHHceeeccCCCeEEE
Confidence 3456788999999987
No 161
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.43 E-value=1.1e+02 Score=20.52 Aligned_cols=36 Identities=14% Similarity=0.132 Sum_probs=29.1
Q ss_pred CCCCEEEEEEEEEEC--CeEEEEeCCCeEEEEeCcccc
Q 021034 98 ELGTKVKGTVFCTDN--RGALVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 98 ~~G~iv~G~V~~i~~--~G~~V~i~~~~~g~lp~sEls 133 (318)
.-|..+.|+|.++.. .-|+|.++.+.+-.+.-.++.
T Consensus 19 sDGlfYlgtV~kV~~~~~~ClV~FeD~s~~wv~~kdi~ 56 (63)
T 2e5q_A 19 TDGLYYLGKIKRVSSSKQSCLVTFEDNSKYWVLWKDIQ 56 (63)
T ss_dssp TTSCEEEEEECCCCSTTSEEEEEETTSCEEEEEGGGEE
T ss_pred cCCCEEEEEEEEEecCCCEEEEEEccCceeEEEeeccc
Confidence 358889999999985 569999998888887776664
No 162
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=21.31 E-value=49 Score=24.62 Aligned_cols=68 Identities=7% Similarity=-0.037 Sum_probs=44.3
Q ss_pred CCEEEEEEEEEECCeEE-EEeCCCeEEEEeCcccccccccCccccCcCCCCEEEEEEEEEe-CCCCeEEEEeeehh
Q 021034 100 GTKVKGTVFCTDNRGAL-VDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGEN-EADDSLVLSLRMIQ 173 (318)
Q Consensus 100 G~iv~G~V~~i~~~G~~-V~i~~~~~g~lp~sEls~~~~~~~~~~~~~~G~~v~v~Vl~vd-~~~~~i~lS~k~~~ 173 (318)
...+.|+|++..+++.| |.+.++..-+.+++-= .+. ..-++.||.|.|....++ ..+++|+.-.+..+
T Consensus 19 e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GK----mRk--~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~de 88 (102)
T 1jt8_A 19 ENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGR----LKN--RIWVREGDVVIVKPWEVQGDQKCDIIWRYTKTQ 88 (102)
T ss_dssp SCCEEEEEECSSCSSEEEEEEETTEEEEEECCHH----HHH--HHCCCSCEEEEECCBCCTTSEEEEEEEESSCSH
T ss_pred CCEEEEEEEEEcCCCEEEEEECCCCEEEEEEccc----cee--eEEecCCCEEEEEeccCCCCceEEEEEEeCHHH
Confidence 34577999999998877 7776666666655321 111 122678999998887776 55566665554443
No 163
>1v1c_A Obscurin; muscle, sarcomere, adapter, myogenesis, SH3-domain; NMR {Homo sapiens}
Probab=20.79 E-value=2.1e+02 Score=19.68 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=28.1
Q ss_pred cCCCCCCEEEEEEEEEECCeEEEEeCC-----CeEEEEeCcccc
Q 021034 95 FNSELGTKVKGTVFCTDNRGALVDITA-----KSSAYLPTQEAC 133 (318)
Q Consensus 95 ~~~~~G~iv~G~V~~i~~~G~~V~i~~-----~~~g~lp~sEls 133 (318)
-.++.|++|+ .+.+-.+.-.+|+... +.+|.+|.+-+.
T Consensus 24 i~lk~Gd~Ve-Vl~k~~~gwW~vr~~~~~~~~~~eGWVPa~yLe 66 (71)
T 1v1c_A 24 ITLREGQYVE-VLDAAHPLRWLVRTKPTKSSPSRQGWVSPAYLD 66 (71)
T ss_dssp CCBCTTCEEE-EEEEEETTEEEEEECCCTTCCCCEEEECGGGEE
T ss_pred eeecCCCEEE-EEEcCCCCEEEEEecCCCCCCCccceecHHHhh
Confidence 3678999997 3555566667898873 689999987653
No 164
>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A
Probab=20.72 E-value=1.7e+02 Score=18.95 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=24.2
Q ss_pred CCCCCCEEEEEEEEEECCe-EEEEeCCCeEEEEeCcccc
Q 021034 96 NSELGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~~~G-~~V~i~~~~~g~lp~sEls 133 (318)
.++.|+++. |....+.| ...... +..|++|.+-+.
T Consensus 21 sf~~Gd~i~--v~~~~~~~Ww~g~~~-g~~G~fP~~yv~ 56 (67)
T 2bzy_A 21 ALEVGDIVK--VTRMNINGQWEGEVN-GRKGLFPFTHVK 56 (67)
T ss_dssp CBCTTCEEE--EEEECSSSEEEEEET-TEEEEEEGGGEE
T ss_pred ccCCCCEEE--EEEecCCCeEEEEeC-CcEEEEehHHeE
Confidence 678999997 44544444 445554 588999987654
No 165
>2jpp_A Translational repressor; RNA recognition, protein/RNA, CSRA, RSMA, shine-dalgarno; NMR {Pseudomonas fluorescens}
Probab=20.70 E-value=1.1e+02 Score=21.03 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=24.0
Q ss_pred cCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 145 IVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 145 ~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
+.+|+.+.+.|++++ ++++.+....+..
T Consensus 12 I~IGd~I~ItVl~v~--g~~VrLGI~APk~ 39 (70)
T 2jpp_A 12 INIGDDITITILGVS--GQQVRIGINAPKD 39 (70)
T ss_dssp EEETTTEEEEEEEEE--TTEEEEEEECCTT
T ss_pred EEECCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 678999999999987 5889998888765
No 166
>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}
Probab=20.55 E-value=44 Score=22.02 Aligned_cols=35 Identities=6% Similarity=-0.002 Sum_probs=24.6
Q ss_pred CCCCCCEEEEEEEEEE-CCeEEEEeCCCeEEEEeCccc
Q 021034 96 NSELGTKVKGTVFCTD-NRGALVDITAKSSAYLPTQEA 132 (318)
Q Consensus 96 ~~~~G~iv~G~V~~i~-~~G~~V~i~~~~~g~lp~sEl 132 (318)
.++.|+++. |.+.. ++........+..|++|.+-+
T Consensus 22 s~~~Gd~i~--v~~~~~~~Ww~g~~~~G~~G~fP~nyV 57 (60)
T 2lx7_A 22 RFAAGELIT--LLQVPDGGWWEGEKEDGLRGWFPASYV 57 (60)
T ss_dssp CCCTTCEEE--BSCCCTTSCEEEECTTSCEEEECGGGE
T ss_pred cCCCCCEEE--EeEecCCCeEEEEeCCCCEEEEcHHHE
Confidence 678999985 55544 445667776568899998643
No 167
>2bti_A Carbon storage regulator homolog; RMSA, CSRA, RNA binding protein; 2.0A {Yersinia enterocolitica} PDB: 1y00_A
Probab=20.47 E-value=1.4e+02 Score=20.17 Aligned_cols=32 Identities=13% Similarity=0.262 Sum_probs=25.5
Q ss_pred ccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 140 VEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 140 ~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
+.+. +..|+.+.+.|++++ ++++.+....+..
T Consensus 10 ~GE~-I~Igd~I~I~Vl~i~--g~~VrlGI~AP~~ 41 (63)
T 2bti_A 10 VGET-LMIGDEVTVTVLGVK--GNQVRIGVNAPKE 41 (63)
T ss_dssp TTCE-EEETTTEEEEEEEEE--TTEEEEEEEECTT
T ss_pred CCCe-EEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 3344 678999999999987 5789998888765
No 168
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=20.45 E-value=1.9e+02 Score=20.18 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.2
Q ss_pred cccCeEEEEEEEEEEcceEEEEECCeEEEEecCCcCc
Q 021034 262 LGIGSVVIGTVQSLKPYGAFIDIGGINGLLHVSQISH 298 (318)
Q Consensus 262 l~~G~~v~G~V~~i~~~G~fV~i~gv~Glv~~s~ls~ 298 (318)
|.-|..+.|.|....+|-+.++-.|-.=|+.+.-+|.
T Consensus 26 L~nG~~l~G~I~~fD~f~VlL~~~g~~qLIYKhAIST 62 (77)
T 1kq1_A 26 FLNGFQMKGVIEEYDKYVVSLNSQGKQHLIYKHAIST 62 (77)
T ss_dssp ETTSCEEEEEEEEECSSEEEEEETTEEEEEEGGGEEE
T ss_pred EeCCCEEEEEEEEECCcEEEEEECCeeEEEEeeeEEE
Confidence 4459999999999999999999888777888776664
No 169
>1vpz_A Carbon storage regulator homolog; CSRA-like fold, structural genomics, joint center for struct genomics, JCSG; HET: MSE; 2.05A {Pseudomonas aeruginosa} SCOP: b.151.1.1
Probab=20.41 E-value=1.3e+02 Score=20.97 Aligned_cols=33 Identities=12% Similarity=0.261 Sum_probs=26.0
Q ss_pred CccccCcCCCCEEEEEEEEEeCCCCeEEEEeeehhh
Q 021034 139 HVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQY 174 (318)
Q Consensus 139 ~~~~~~~~~G~~v~v~Vl~vd~~~~~i~lS~k~~~~ 174 (318)
++.+. +.+|+.+++.|+++. ++++.+....+..
T Consensus 19 K~GEs-I~IGddI~ItVl~i~--g~qVrLGI~APk~ 51 (73)
T 1vpz_A 19 RVGET-LMVGDDVTVTVLGVK--GNQVRIGVNAPKE 51 (73)
T ss_dssp ETTCE-EEETTTEEEEEEEEE--TTEEEEEEEEETT
T ss_pred cCCCE-EEeCCCEEEEEEEEe--CCEEEEEEECCCC
Confidence 34444 778999999999987 5789888887765
No 170
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=20.35 E-value=1.9e+02 Score=20.69 Aligned_cols=34 Identities=9% Similarity=-0.018 Sum_probs=26.4
Q ss_pred CCEEEEEEEEEECCeE-EEEeCCCeEEEEeCcccc
Q 021034 100 GTKVKGTVFCTDNRGA-LVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 100 G~iv~G~V~~i~~~G~-~V~i~~~~~g~lp~sEls 133 (318)
|..+.|+|.++.+++. .|.|.++..-.|...++.
T Consensus 35 ~~yYPAkI~sV~~~~~YtV~F~DG~~etvk~~~IK 69 (85)
T 3qii_A 35 CRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVK 69 (85)
T ss_dssp SCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCEeeEEEEEECCCCeEEEEEeCCCeEEecHHHcc
Confidence 7788999999998765 478876777777777664
No 171
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=20.24 E-value=2.1e+02 Score=19.45 Aligned_cols=35 Identities=9% Similarity=-0.082 Sum_probs=27.2
Q ss_pred CCCEEEEEEEEEECCe-EEEEeCCCeEEEEeCcccc
Q 021034 99 LGTKVKGTVFCTDNRG-ALVDITAKSSAYLPTQEAC 133 (318)
Q Consensus 99 ~G~iv~G~V~~i~~~G-~~V~i~~~~~g~lp~sEls 133 (318)
-|....|+|.++.+++ +.|.+.++..-.+..+++.
T Consensus 19 D~~yYpA~I~si~~~~~Y~V~F~dG~~etvk~~~ik 54 (67)
T 3p8d_A 19 DCRFYPAKVTAVNKDGTYTVKFYDGVVQTVKHIHVK 54 (67)
T ss_dssp TSCEEEEEEEEECTTSEEEEEETTSCEEEEEGGGEE
T ss_pred CCCEeeEEEEEECCCCeEEEEEeCCceEEEeHHHcc
Confidence 3778999999999875 4578876777777777764
Done!