BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>021036
MARIVDFTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAV
AWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVL
IGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF
SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA
HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS
CLGMAVSPGNLVVAMVQI

High Scoring Gene Products

Symbol, full name Information P value
AT3G49400 protein from Arabidopsis thaliana 9.6e-73

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  021036
        (318 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2082976 - symbol:AT3G49400 "AT3G49400" species...   735  9.6e-73   1


>TAIR|locus:2082976 [details] [associations]
            symbol:AT3G49400 "AT3G49400" species:3702 "Arabidopsis
            thaliana" [GO:0000166 "nucleotide binding" evidence=ISS]
            [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] InterPro:IPR017986 InterPro:IPR001680
            InterPro:IPR015943 Pfam:PF00400 PROSITE:PS50082 PROSITE:PS50294
            SMART:SM00320 EMBL:CP002686 Gene3D:2.130.10.10 SUPFAM:SSF50978
            InterPro:IPR024761 Pfam:PF12657 IPI:IPI00542252 RefSeq:NP_190509.2
            UniGene:At.35611 ProteinModelPortal:F4IXX3 SMR:F4IXX3 PRIDE:F4IXX3
            EnsemblPlants:AT3G49400.1 GeneID:824102 KEGG:ath:AT3G49400
            OMA:YSCSQDN ArrayExpress:F4IXX3 Uniprot:F4IXX3
        Length = 892

 Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
 Identities = 147/294 (50%), Positives = 193/294 (65%)

Query:    26 SKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW 83
             S G     +P     C   I+   Y SR A+L S +VAWS +LR SS+       G+   
Sbjct:   223 SNGQDRRSLPKALKKCSQEISPQTYVSREALLSSHSVAWSSLLRFSSES----SCGNMLR 278

Query:    84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITXXXXXXXXXXX 143
             FS+LA+G +SG VS+W++  P+CY +E   V     L  + Q H+SW++           
Sbjct:   279 FSLLAIGSKSGSVSIWKVHAPECYHIERSNVSPMVELTAIVQTHSSWVSTMSWGIFGCDS 338

Query:   144 XNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203
              NPQV+LVTGS DGSV+IW    ++LQ S E +   F LLKEVV VN V +S LS ++  
Sbjct:   339 SNPQVVLVTGSCDGSVKIWMSNKEDLQNSVEVYKSSFFLLKEVVAVNPVQVSTLSFVVS- 397

Query:   204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263
                  M LA+GKGSGSF++WKC+IS  KF+++ S NAH+QVVTGLAW++DG CLYSCSQD
Sbjct:   398 NHYNAMHLAIGKGSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQD 457

Query:   264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317
             N+VRSWI   N++S+V IP NTPGL S TDLPD F+SCLG+A+SPGNL VA+V+
Sbjct:   458 NYVRSWILCENAISEVPIPANTPGLSSTTDLPDDFLSCLGVALSPGNLAVALVR 511


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       306   0.00099  115 3  11 22  0.38    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  245 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.95u 0.09s 23.04t   Elapsed:  00:00:01
  Total cpu time:  22.95u 0.09s 23.04t   Elapsed:  00:00:01
  Start:  Fri May 10 22:15:13 2013   End:  Fri May 10 22:15:14 2013

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