BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021036
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 206 PRLMLLAVGKGSGSFDLWKCDISCNK---FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ 262
P LLA G + +W + S ++ D + H+ V G+AW+ DG L +CS+
Sbjct: 68 PHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR 127
Query: 263 DNFVRSW 269
D V W
Sbjct: 128 DKSVWIW 134
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 28/155 (18%)
Query: 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ---- 204
LL GS D +V IW KE T + +L++I +
Sbjct: 72 LLAAGSFDSTVSIW--------------------AKEESADRTFEMDLLAIIEGHENEVK 111
Query: 205 ----SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260
S LA S +W+ D S +++ + H Q V + W L S
Sbjct: 112 GVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASS 171
Query: 261 SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLP 295
S D+ VR W + + V++ G +D
Sbjct: 172 SYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFD 206
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209
L G+S V++WD Q+ ++ +H L S S IL
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL-----------SWNSYIL-------- 213
Query: 210 LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
GS S + D+ + V + + H Q V GL WA DG L S DN V W
Sbjct: 214 ----SSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 210 LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
+L+ G SG+ I+ ++ +G+ H V GLAW DG L S DN V+ W
Sbjct: 188 VLSSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIW 244
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 24/120 (20%)
Query: 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209
L G+S V++WD Q+ ++ +H L S S IL
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL-----------SWNSYIL-------- 202
Query: 210 LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
GS S + D+ + V + + H Q V GL WA DG L S DN V W
Sbjct: 203 ----SSGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 46/120 (38%), Gaps = 24/120 (20%)
Query: 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209
L G+S V++WD Q+ ++ +H + +S S IL
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSH-----------SARVGSLSWNSYILS------- 123
Query: 210 LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
GS S + D+ + V + + H Q V GL WA DG L S DN V W
Sbjct: 124 -----SGSRSGHIHHHDVRVAEH-HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 177
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 175
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 158
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 149
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 32.3 bits (72), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 152
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 153
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 159
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 154
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 170
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD + K+ AH P S
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVS 156
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 149 LLVTGSSDGSVRIWD-----------GYIQELQK-------------SAEAHCVPFSLLK 184
L V+G+ D S ++WD G+ ++ S +A C F L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 185 EVVTVNTVPISVLSLILPV---QSPRLMLLAVGKGSGSFDLWKCDI-SCNKFDKVGSYNA 240
+ + +++ I V +S RL+L +D + C++ K D+ G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLL-------AGYDDFNCNVWDALKADRAGVLAG 310
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
HD V+ L DG + + S D+F++ W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 149 LLVTGSSDGSVRIWD-----------GYIQELQK-------------SAEAHCVPFSLLK 184
L V+G+ D S ++WD G+ ++ S +A C F L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 185 EVVTVNTVPISVLSLILPV---QSPRLMLLAVGKGSGSFDLWKCDI-SCNKFDKVGSYNA 240
+ + +++ I V +S RL+L +D + C++ K D+ G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLL-------AGYDDFNCNVWDALKADRAGVLAG 310
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
HD V+ L DG + + S D+F++ W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 149 LLVTGSSDGSVRIWD-----------GYIQELQK-------------SAEAHCVPFSLLK 184
L V+G+ D S ++WD G+ ++ S +A C F L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 185 EVVTVNTVPISVLSLILPV---QSPRLMLLAVGKGSGSFDLWKCDI-SCNKFDKVGSYNA 240
+ + +++ I V +S RL+L +D + C++ K D+ G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLL-------AGYDDFNCNVWDALKADRAGVLAG 310
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
HD V+ L DG + + S D+F++ W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 149 LLVTGSSDGSVRIWD-----------GYIQELQK-------------SAEAHCVPFSLLK 184
L V+G+ D S ++WD G+ ++ S +A C F L
Sbjct: 198 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257
Query: 185 EVVTVNTVPISVLSLILPV---QSPRLMLLAVGKGSGSFDLWKCDI-SCNKFDKVGSYNA 240
+ + +++ I V +S RL+L +D + C++ K D+ G
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLL-------AGYDDFNCNVWDALKADRAGVLAG 310
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
HD V+ L DG + + S D+F++ W
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 149 LLVTGSSDGSVRIWD-----------GYIQELQK-------------SAEAHCVPFSLLK 184
L V+G+ D S ++WD G+ ++ S +A C F L
Sbjct: 209 LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 268
Query: 185 EVVTVNTVPISVLSLILPV---QSPRLMLLAVGKGSGSFDLWKCDI-SCNKFDKVGSYNA 240
+ + +++ I V +S RL+L +D + C++ K D+ G
Sbjct: 269 DQELMTYSHDNIICGITSVSFSKSGRLLL-------AGYDDFNCNVWDALKADRAGVLAG 321
Query: 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
HD V+ L DG + + S D+F++ W
Sbjct: 322 HDNRVSCLGVTDDGMAVATGSWDSFLKIW 350
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD K+ AH P S
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 31.2 bits (69), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 145 NPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181
NPQ L+V+GS D SVRIWD K+ AH P S
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVS 156
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177
+ +++TGSSD +VR+WD E+ + HC
Sbjct: 183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHC 213
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275
+ S NK+ +V H+ VTG+ WA D + +C D W G +
Sbjct: 36 EKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRT 85
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 209 MLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVR 267
M A KG FDL DI + GS + V+ +AW+ DG LYS DN +R
Sbjct: 252 MCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPECVS-IAWSADGSTLYSGYTDNVIR 310
Query: 268 SW 269
W
Sbjct: 311 VW 312
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 216 GSGSFDLWKCDISCNK--FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
S SFD C N+ F+ V + H+ V +AWA G L +CS+D V W
Sbjct: 77 ASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVW 132
Score = 27.7 bits (60), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 18/121 (14%)
Query: 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL 208
LL T S D SV +W E+ + E CV V+ +T + + V P
Sbjct: 119 LLATCSRDKSVWVW-----EVDEEDEYECV------SVLNSHTQDVKHV-----VWHPSQ 162
Query: 209 MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268
LLA + L++ + + + + H+ V LA+ G L SCS D VR
Sbjct: 163 ELLASASYDDTVKLYREEE--DDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRI 220
Query: 269 W 269
W
Sbjct: 221 W 221
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275
+ S NK+ +V H+ VTG+ WA D + +C D W G +
Sbjct: 36 EKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT 85
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 246 TGLAWAFDGCCLYSCSQDNFVRSW 269
T LAW+ DG L++ DN VR W
Sbjct: 310 TSLAWSADGQTLFAGYTDNLVRVW 333
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 119 VLIGLFQAHNSWITXXXXXXXXXXXXNPQVLLVTGSSDGSVRIWDGYIQE 168
V G+ + H+ W+T + VL ++GS D +V IW Y +E
Sbjct: 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVL-ISGSRDKTVMIWKLYEEE 60
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 246 TGLAWAFDGCCLYSCSQDNFVRSW 269
T LAW+ DG L++ DN VR W
Sbjct: 287 TSLAWSADGQTLFAGYTDNLVRVW 310
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252
PISVL + +L+L A G+ +W + + H Q + +W
Sbjct: 249 PISVLEF---NDTNKLLLSA--SDDGTLRIWHG----GNGNSQNCFYGHSQSIVSASWVG 299
Query: 253 DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286
D + SCS D VR W N+L +SI P
Sbjct: 300 DDKVI-SCSMDGSVRLWSLKQNTLLALSIVDGVP 332
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 5 VDFTSNKMKDSNTHPTVAASKSKGNSITKIPSNC 38
V F NK +D N + + A S N++ KI S+C
Sbjct: 99 VKFEGNKQRDFNQNFILTAQASPSNTVWKIASDC 132
>pdb|2O36|A Chain A, Crystal Structure Of Engineered Thimet Oligopeptidase With
Neurolysin Specificity In Neurotensin Cleavage Site
Length = 674
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199
DG +R WD Q +CV +LLKE V V +L +
Sbjct: 314 DGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGI 357
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269
AH V GL W+ DG + S S D ++ W
Sbjct: 237 AHSGSVFGLTWSPDGTKIASASADKTIKIW 266
>pdb|1S4B|P Chain P, Crystal Structure Of Human Thimet Oligopeptidase
Length = 674
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199
DG +R WD Q +CV +LLKE V V +L +
Sbjct: 314 DGRIRAWDMRYYMNQVEETRYCVDQNLLKEYFPVQVVTHGLLGI 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.132 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,203,070
Number of Sequences: 62578
Number of extensions: 350410
Number of successful extensions: 865
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 670
Number of HSP's gapped (non-prelim): 201
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)