Query 021036
Match_columns 318
No_of_seqs 360 out of 1894
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 07:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021036.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021036hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 5.5E-43 1.2E-47 278.1 19.8 244 10-317 121-470 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 3.1E-37 6.6E-42 248.2 16.8 238 15-317 185-449 (459)
3 KOG0263 Transcription initiati 100.0 4.2E-35 9.1E-40 252.6 18.7 248 11-317 385-638 (707)
4 KOG0279 G protein beta subunit 100.0 5.6E-34 1.2E-38 218.2 22.0 231 8-316 19-251 (315)
5 KOG0286 G-protein beta subunit 100.0 1.9E-33 4.2E-38 216.6 23.3 237 15-317 65-334 (343)
6 KOG0272 U4/U6 small nuclear ri 100.0 3.3E-34 7.1E-39 230.8 16.4 208 12-270 225-458 (459)
7 KOG0315 G-protein beta subunit 100.0 9.2E-33 2E-37 208.4 23.1 249 16-317 9-277 (311)
8 KOG0271 Notchless-like WD40 re 100.0 2.7E-33 5.9E-38 223.1 18.9 169 68-276 111-280 (480)
9 KOG0273 Beta-transducin family 100.0 1.1E-32 2.4E-37 224.9 21.2 248 12-317 186-471 (524)
10 KOG0645 WD40 repeat protein [G 100.0 6.6E-31 1.4E-35 200.7 25.1 239 19-316 29-299 (312)
11 KOG0273 Beta-transducin family 100.0 5.2E-31 1.1E-35 215.2 22.4 235 16-316 246-511 (524)
12 KOG0295 WD40 repeat-containing 100.0 7.1E-31 1.5E-35 208.0 22.3 244 17-317 120-395 (406)
13 KOG0263 Transcription initiati 100.0 1E-31 2.2E-36 231.8 19.0 232 16-316 462-703 (707)
14 KOG0291 WD40-repeat-containing 100.0 1.3E-30 2.9E-35 223.8 24.1 242 16-316 276-538 (893)
15 KOG0279 G protein beta subunit 100.0 1.8E-30 4E-35 199.0 22.1 228 14-317 72-302 (315)
16 KOG0286 G-protein beta subunit 100.0 5.1E-30 1.1E-34 197.8 21.2 191 75-316 100-291 (343)
17 KOG0318 WD40 repeat stress pro 100.0 1.4E-29 3.1E-34 209.4 24.6 278 7-318 150-550 (603)
18 KOG0284 Polyadenylation factor 100.0 2.9E-31 6.3E-36 213.1 13.8 238 16-317 107-369 (464)
19 KOG0265 U5 snRNP-specific prot 100.0 1.2E-28 2.5E-33 191.0 21.0 234 16-317 58-327 (338)
20 KOG0319 WD40-repeat-containing 100.0 2.8E-29 6.1E-34 215.2 19.3 231 18-317 378-608 (775)
21 KOG0284 Polyadenylation factor 100.0 2.5E-30 5.4E-35 207.7 10.7 190 68-316 134-325 (464)
22 KOG0277 Peroxisomal targeting 100.0 1.5E-28 3.2E-33 186.3 16.5 228 12-316 68-297 (311)
23 KOG0285 Pleiotropic regulator 100.0 1E-28 2.2E-33 195.6 16.3 194 65-316 144-337 (460)
24 KOG0266 WD40 repeat-containing 100.0 1.7E-27 3.6E-32 209.0 25.8 220 20-317 174-398 (456)
25 KOG0313 Microtubule binding pr 100.0 8.3E-28 1.8E-32 191.6 21.2 257 17-317 115-407 (423)
26 KOG0276 Vesicle coat complex C 100.0 3.7E-28 8E-33 204.9 19.7 191 20-277 70-262 (794)
27 KOG0281 Beta-TrCP (transducin 100.0 1.5E-29 3.2E-34 199.8 10.6 187 68-308 273-459 (499)
28 KOG0276 Vesicle coat complex C 100.0 4.8E-28 1E-32 204.2 19.7 230 6-317 10-246 (794)
29 KOG0292 Vesicle coat complex C 100.0 8.9E-28 1.9E-32 209.9 21.4 249 20-317 24-311 (1202)
30 KOG0266 WD40 repeat-containing 100.0 1.9E-27 4.2E-32 208.6 22.0 192 71-317 158-353 (456)
31 KOG0645 WD40 repeat protein [G 100.0 1E-26 2.2E-31 177.9 22.8 184 84-317 27-214 (312)
32 KOG1332 Vesicle coat complex C 100.0 5.8E-28 1.2E-32 182.1 15.1 239 13-316 19-274 (299)
33 KOG0285 Pleiotropic regulator 100.0 1.2E-27 2.5E-32 189.6 16.9 215 18-316 164-378 (460)
34 KOG0643 Translation initiation 100.0 4.1E-27 8.8E-32 179.7 19.2 221 68-317 6-306 (327)
35 KOG0315 G-protein beta subunit 100.0 3.2E-26 6.8E-31 173.2 22.0 197 19-277 97-293 (311)
36 PLN00181 protein SPA1-RELATED; 100.0 5.1E-26 1.1E-30 213.5 28.4 230 16-317 494-727 (793)
37 KOG0316 Conserved WD40 repeat- 100.0 5.2E-27 1.1E-31 176.2 17.0 188 69-316 14-201 (307)
38 KOG0277 Peroxisomal targeting 100.0 6.7E-27 1.5E-31 177.4 17.7 216 25-316 36-253 (311)
39 KOG0264 Nucleosome remodeling 100.0 8.8E-27 1.9E-31 189.8 19.7 255 9-314 129-389 (422)
40 KOG0282 mRNA splicing factor [ 100.0 8.5E-28 1.8E-32 197.1 13.5 206 68-317 210-451 (503)
41 KOG0318 WD40 repeat stress pro 100.0 7.6E-26 1.6E-30 187.5 24.4 250 10-315 65-380 (603)
42 PTZ00421 coronin; Provisional 100.0 7.1E-26 1.5E-30 198.3 25.9 209 10-278 81-296 (493)
43 KOG0647 mRNA export protein (c 100.0 4.4E-26 9.6E-31 176.9 20.7 242 10-316 33-311 (347)
44 PLN00181 protein SPA1-RELATED; 100.0 1.1E-25 2.5E-30 211.1 28.0 234 17-317 545-782 (793)
45 KOG0282 mRNA splicing factor [ 99.9 1E-26 2.2E-31 190.7 16.0 229 8-316 218-493 (503)
46 KOG0316 Conserved WD40 repeat- 99.9 5.5E-26 1.2E-30 170.7 18.6 229 15-311 27-283 (307)
47 PTZ00421 coronin; Provisional 99.9 3.3E-25 7.2E-30 194.1 26.5 237 18-316 33-277 (493)
48 KOG0319 WD40-repeat-containing 99.9 2.4E-26 5.3E-31 197.3 18.3 199 14-272 421-619 (775)
49 KOG0291 WD40-repeat-containing 99.9 1.6E-25 3.5E-30 192.7 23.0 234 15-317 360-601 (893)
50 KOG0295 WD40 repeat-containing 99.9 5.7E-26 1.2E-30 180.3 18.4 192 18-271 206-405 (406)
51 KOG0281 Beta-TrCP (transducin 99.9 1.8E-27 3.9E-32 188.0 9.8 202 18-307 208-409 (499)
52 cd00200 WD40 WD40 domain, foun 99.9 7.8E-25 1.7E-29 181.1 26.2 217 18-317 64-280 (289)
53 KOG0289 mRNA splicing factor [ 99.9 1.2E-25 2.5E-30 182.4 20.0 220 17-316 231-450 (506)
54 KOG0299 U3 snoRNP-associated p 99.9 1.5E-25 3.2E-30 183.0 19.7 249 16-316 153-443 (479)
55 KOG0265 U5 snRNP-specific prot 99.9 6.6E-26 1.4E-30 175.8 16.3 195 64-315 39-233 (338)
56 cd00200 WD40 WD40 domain, foun 99.9 1.7E-24 3.6E-29 179.2 26.0 218 17-317 21-238 (289)
57 KOG1407 WD40 repeat protein [F 99.9 3.2E-25 7E-30 168.9 19.6 221 15-317 30-250 (313)
58 KOG0772 Uncharacterized conser 99.9 7.1E-26 1.5E-30 187.3 17.1 247 14-317 176-428 (641)
59 KOG0310 Conserved WD40 repeat- 99.9 2.6E-25 5.6E-30 182.8 20.2 219 15-316 78-297 (487)
60 KOG0275 Conserved WD40 repeat- 99.9 1.6E-26 3.6E-31 181.2 12.3 228 15-315 223-496 (508)
61 KOG0308 Conserved WD40 repeat- 99.9 1.4E-25 3E-30 190.3 17.7 242 10-317 30-274 (735)
62 KOG2096 WD40 repeat protein [G 99.9 3.7E-25 7.9E-30 173.2 18.3 224 67-317 81-392 (420)
63 PTZ00420 coronin; Provisional 99.9 3.3E-24 7.1E-29 188.9 26.2 228 12-309 82-317 (568)
64 KOG0296 Angio-associated migra 99.9 1.8E-24 3.8E-29 172.0 21.7 233 16-317 75-387 (399)
65 KOG0283 WD40 repeat-containing 99.9 8.5E-25 1.8E-29 190.7 21.8 195 66-317 363-565 (712)
66 KOG0306 WD40-repeat-containing 99.9 5.3E-25 1.2E-29 189.5 20.2 248 17-317 384-653 (888)
67 KOG0275 Conserved WD40 repeat- 99.9 2.2E-26 4.7E-31 180.6 10.4 171 72-277 213-383 (508)
68 PTZ00420 coronin; Provisional 99.9 4.8E-24 1E-28 187.9 26.3 206 20-273 33-249 (568)
69 KOG0305 Anaphase promoting com 99.9 1.1E-24 2.3E-29 185.1 20.6 229 18-317 188-450 (484)
70 KOG0288 WD40 repeat protein Ti 99.9 1.1E-25 2.3E-30 181.5 13.5 239 16-317 186-450 (459)
71 KOG1446 Histone H3 (Lys4) meth 99.9 1.5E-23 3.2E-28 164.1 24.0 232 18-317 27-294 (311)
72 KOG0283 WD40 repeat-containing 99.9 7.2E-25 1.6E-29 191.2 18.1 207 68-315 262-520 (712)
73 KOG0640 mRNA cleavage stimulat 99.9 1.4E-24 3E-29 169.4 17.0 256 15-317 122-415 (430)
74 KOG0640 mRNA cleavage stimulat 99.9 7.2E-25 1.6E-29 171.0 14.3 210 68-316 108-323 (430)
75 KOG0278 Serine/threonine kinas 99.9 2.6E-25 5.7E-30 168.4 11.5 218 15-317 69-286 (334)
76 KOG0268 Sof1-like rRNA process 99.9 5E-25 1.1E-29 175.0 13.5 238 18-317 80-334 (433)
77 KOG1407 WD40 repeat protein [F 99.9 1.8E-23 4E-28 159.4 20.9 218 12-316 72-290 (313)
78 KOG0296 Angio-associated migra 99.9 8.7E-24 1.9E-28 168.1 19.3 168 67-278 59-226 (399)
79 KOG0300 WD40 repeat-containing 99.9 3.1E-24 6.8E-29 168.0 16.5 200 19-273 162-387 (481)
80 KOG0264 Nucleosome remodeling 99.9 6.7E-24 1.5E-28 173.1 17.8 206 12-273 185-405 (422)
81 KOG0973 Histone transcription 99.9 2.2E-23 4.8E-28 186.4 22.1 247 17-316 25-343 (942)
82 KOG0643 Translation initiation 99.9 4.6E-24 9.9E-29 163.2 15.0 218 15-272 62-317 (327)
83 KOG0278 Serine/threonine kinas 99.9 4.6E-24 1E-28 161.8 14.7 191 15-277 110-302 (334)
84 KOG0293 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 170.1 17.6 239 15-317 234-502 (519)
85 KOG0646 WD40 repeat protein [G 99.9 1.3E-23 2.9E-28 171.9 18.1 210 12-278 87-313 (476)
86 KOG0292 Vesicle coat complex C 99.9 1.1E-23 2.5E-28 184.4 18.6 197 68-316 47-268 (1202)
87 KOG0269 WD40 repeat-containing 99.9 4.6E-24 9.9E-29 184.4 14.6 189 73-312 88-277 (839)
88 KOG0305 Anaphase promoting com 99.9 3.4E-23 7.4E-28 176.0 18.8 209 16-274 228-463 (484)
89 KOG0274 Cdc4 and related F-box 99.9 4.9E-23 1.1E-27 180.9 20.2 191 16-281 260-450 (537)
90 KOG0306 WD40-repeat-containing 99.9 2.9E-23 6.3E-28 178.9 18.1 196 16-273 465-665 (888)
91 KOG0641 WD40 repeat protein [G 99.9 6.1E-22 1.3E-26 148.4 22.8 240 18-317 45-292 (350)
92 KOG1332 Vesicle coat complex C 99.9 1.4E-23 3E-28 158.6 14.0 196 75-316 14-229 (299)
93 KOG1539 WD repeat protein [Gen 99.9 6.4E-23 1.4E-27 178.6 19.8 185 73-317 449-636 (910)
94 KOG0973 Histone transcription 99.9 2.7E-23 5.8E-28 185.9 17.3 218 73-317 14-238 (942)
95 KOG0310 Conserved WD40 repeat- 99.9 9.2E-23 2E-27 167.9 18.6 187 75-317 71-257 (487)
96 KOG1036 Mitotic spindle checkp 99.9 1.8E-22 4E-27 157.4 19.2 244 9-317 18-293 (323)
97 KOG4283 Transcription-coupled 99.9 7.6E-23 1.6E-27 158.7 16.7 225 59-316 29-264 (397)
98 KOG0267 Microtubule severing p 99.9 2.1E-24 4.5E-29 185.2 8.4 193 66-316 64-256 (825)
99 KOG2445 Nuclear pore complex c 99.9 1.7E-21 3.7E-26 152.0 23.3 273 11-316 19-306 (361)
100 KOG0302 Ribosome Assembly prot 99.9 6.5E-23 1.4E-27 163.8 15.4 214 16-273 164-379 (440)
101 KOG1408 WD40 repeat protein [F 99.9 1.1E-22 2.5E-27 174.6 17.2 203 73-316 460-701 (1080)
102 KOG0274 Cdc4 and related F-box 99.9 2E-22 4.4E-27 177.1 19.3 184 18-274 219-402 (537)
103 KOG0269 WD40 repeat-containing 99.9 1.1E-22 2.3E-27 176.0 16.0 216 14-308 97-319 (839)
104 KOG0301 Phospholipase A2-activ 99.9 4.1E-22 8.8E-27 170.5 19.1 227 20-316 28-277 (745)
105 KOG0772 Uncharacterized conser 99.9 2E-22 4.4E-27 167.0 15.5 209 4-271 268-486 (641)
106 KOG0289 mRNA splicing factor [ 99.9 3.4E-21 7.4E-26 156.6 21.6 220 18-318 274-496 (506)
107 KOG1274 WD40 repeat protein [G 99.9 2.2E-21 4.7E-26 170.9 21.9 241 19-313 27-285 (933)
108 KOG0294 WD40 repeat-containing 99.9 1.8E-21 4E-26 152.2 18.1 203 18-274 54-283 (362)
109 KOG0270 WD40 repeat-containing 99.9 4.9E-21 1.1E-25 156.1 20.7 215 16-277 191-409 (463)
110 KOG0308 Conserved WD40 repeat- 99.9 3E-21 6.5E-26 164.2 18.9 199 17-274 85-287 (735)
111 KOG0639 Transducin-like enhanc 99.9 6.1E-22 1.3E-26 163.8 14.2 218 15-317 475-693 (705)
112 KOG0293 WD40 repeat-containing 99.9 1.9E-21 4.1E-26 157.3 15.9 192 68-315 220-412 (519)
113 KOG0313 Microtubule binding pr 99.9 3.7E-21 8E-26 154.0 16.9 191 75-317 108-319 (423)
114 KOG0646 WD40 repeat protein [G 99.9 1.8E-20 3.8E-25 153.8 20.4 262 22-317 12-296 (476)
115 KOG1446 Histone H3 (Lys4) meth 99.9 8.7E-20 1.9E-24 143.1 21.3 188 71-316 13-205 (311)
116 KOG1273 WD40 repeat protein [G 99.9 9.4E-21 2E-25 148.4 14.9 208 75-317 26-268 (405)
117 KOG0639 Transducin-like enhanc 99.9 9.4E-21 2E-25 156.9 15.6 184 75-316 468-651 (705)
118 KOG0288 WD40 repeat protein Ti 99.9 8.5E-21 1.9E-25 153.4 14.8 194 8-269 265-458 (459)
119 KOG0267 Microtubule severing p 99.9 6.8E-22 1.5E-26 169.9 7.2 175 84-316 40-214 (825)
120 KOG0641 WD40 repeat protein [G 99.9 3.1E-19 6.7E-24 133.9 20.3 229 19-315 103-336 (350)
121 KOG0647 mRNA export protein (c 99.8 1.2E-19 2.6E-24 141.4 17.6 176 84-318 40-218 (347)
122 KOG0294 WD40 repeat-containing 99.8 3.9E-19 8.5E-24 139.3 20.0 209 61-317 32-270 (362)
123 KOG4283 Transcription-coupled 99.8 1E-19 2.2E-24 141.5 16.6 217 11-276 50-280 (397)
124 KOG0270 WD40 repeat-containing 99.8 8.8E-20 1.9E-24 148.9 16.8 197 16-276 255-453 (463)
125 KOG1445 Tumor-specific antigen 99.8 3.7E-20 8E-25 157.5 14.7 100 203-316 635-738 (1012)
126 KOG0268 Sof1-like rRNA process 99.8 2.9E-20 6.4E-25 148.1 12.6 200 68-317 62-291 (433)
127 KOG0300 WD40 repeat-containing 99.8 2.2E-19 4.9E-24 141.0 16.7 192 64-310 264-456 (481)
128 KOG1034 Transcriptional repres 99.8 2.2E-20 4.8E-25 147.0 10.5 224 12-272 143-383 (385)
129 KOG0301 Phospholipase A2-activ 99.8 3.9E-19 8.4E-24 152.5 18.7 210 11-272 65-288 (745)
130 KOG0302 Ribosome Assembly prot 99.8 3.7E-19 8E-24 142.5 16.9 160 70-266 255-433 (440)
131 KOG0650 WD40 repeat nucleolar 99.8 1.7E-19 3.7E-24 152.4 15.6 242 18-317 413-724 (733)
132 KOG2919 Guanine nucleotide-bin 99.8 7.3E-19 1.6E-23 138.3 17.4 228 14-316 120-358 (406)
133 KOG0321 WD40 repeat-containing 99.8 8.3E-19 1.8E-23 149.2 18.7 240 16-308 111-370 (720)
134 KOG2096 WD40 repeat protein [G 99.8 4.3E-19 9.2E-24 139.4 15.6 164 70-270 185-400 (420)
135 KOG4378 Nuclear protein COP1 [ 99.8 4E-19 8.6E-24 147.1 16.2 186 76-317 83-269 (673)
136 KOG1034 Transcriptional repres 99.8 2.5E-19 5.5E-24 141.1 13.7 236 18-316 105-371 (385)
137 KOG1274 WD40 repeat protein [G 99.8 1.7E-18 3.7E-23 152.9 19.9 188 85-317 26-251 (933)
138 KOG0290 Conserved WD40 repeat- 99.8 2E-18 4.3E-23 134.0 18.0 237 17-316 111-354 (364)
139 KOG2048 WD40 repeat protein [G 99.8 7.6E-18 1.7E-22 144.3 23.3 242 18-309 38-302 (691)
140 KOG1539 WD repeat protein [Gen 99.8 1E-17 2.2E-22 146.7 24.2 245 18-317 173-595 (910)
141 KOG2055 WD40 repeat protein [G 99.8 1.2E-18 2.7E-23 142.9 17.3 235 10-317 263-501 (514)
142 KOG0642 Cell-cycle nuclear pro 99.8 5.4E-19 1.2E-23 148.3 14.7 223 17-276 306-565 (577)
143 KOG1063 RNA polymerase II elon 99.8 3E-18 6.4E-23 147.1 19.4 244 18-318 280-638 (764)
144 KOG4328 WD40 protein [Function 99.8 1.5E-18 3.2E-23 142.3 16.6 240 10-317 192-439 (498)
145 KOG0303 Actin-binding protein 99.8 7.4E-18 1.6E-22 136.0 19.2 203 10-275 87-297 (472)
146 KOG0307 Vesicle coat complex C 99.8 3.3E-19 7.1E-24 160.8 12.6 218 19-311 82-309 (1049)
147 KOG2106 Uncharacterized conser 99.8 2.1E-17 4.5E-22 137.3 22.0 228 16-317 256-510 (626)
148 KOG4378 Nuclear protein COP1 [ 99.8 4.6E-18 1E-22 140.9 16.8 212 19-310 93-305 (673)
149 KOG2055 WD40 repeat protein [G 99.8 1.3E-17 2.8E-22 137.0 17.8 221 20-316 228-453 (514)
150 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.2E-16 4.7E-21 132.3 26.1 216 19-315 3-223 (300)
151 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.1E-16 4.6E-21 132.3 25.8 211 19-316 45-266 (300)
152 KOG0321 WD40 repeat-containing 99.8 1.6E-17 3.4E-22 141.5 18.2 217 14-275 61-304 (720)
153 KOG1273 WD40 repeat protein [G 99.8 2.4E-17 5.1E-22 129.5 17.8 241 17-315 35-310 (405)
154 KOG0299 U3 snoRNP-associated p 99.8 5.1E-18 1.1E-22 139.2 14.6 198 68-310 138-339 (479)
155 KOG2445 Nuclear pore complex c 99.8 5.7E-17 1.2E-21 126.9 19.7 197 76-309 17-234 (361)
156 KOG1007 WD repeat protein TSSC 99.8 3.7E-17 8.1E-22 126.9 18.1 231 27-312 93-344 (370)
157 KOG0771 Prolactin regulatory e 99.8 8.7E-18 1.9E-22 136.6 14.2 189 76-316 148-342 (398)
158 KOG1009 Chromatin assembly com 99.8 3.4E-17 7.3E-22 132.6 17.4 138 18-178 27-166 (434)
159 KOG1009 Chromatin assembly com 99.8 7E-18 1.5E-22 136.5 13.1 220 73-316 14-248 (434)
160 KOG1036 Mitotic spindle checkp 99.8 6E-17 1.3E-21 126.8 17.5 180 75-317 16-196 (323)
161 KOG1408 WD40 repeat protein [F 99.8 1.2E-17 2.6E-22 144.1 14.2 194 17-272 471-713 (1080)
162 KOG4328 WD40 protein [Function 99.8 2.1E-17 4.7E-22 135.6 14.5 202 68-315 182-386 (498)
163 KOG0642 Cell-cycle nuclear pro 99.8 3.4E-17 7.3E-22 137.7 15.9 220 60-317 282-550 (577)
164 KOG2106 Uncharacterized conser 99.8 5.2E-16 1.1E-20 129.1 22.6 232 12-317 208-466 (626)
165 KOG0303 Actin-binding protein 99.8 1.1E-16 2.3E-21 129.4 17.6 169 68-273 77-250 (472)
166 KOG2048 WD40 repeat protein [G 99.8 3E-16 6.4E-21 134.7 21.1 161 75-277 28-189 (691)
167 KOG1188 WD40 repeat protein [G 99.7 4.6E-17 9.9E-22 129.1 14.3 182 85-317 41-232 (376)
168 KOG1517 Guanine nucleotide bin 99.7 2E-16 4.4E-21 142.0 19.1 234 17-316 1123-1369(1387)
169 KOG1523 Actin-related protein 99.7 1.3E-16 2.8E-21 125.6 15.6 208 74-316 12-224 (361)
170 KOG0649 WD40 repeat protein [G 99.7 6E-16 1.3E-20 117.6 17.6 180 76-282 14-196 (325)
171 KOG1063 RNA polymerase II elon 99.7 8.4E-17 1.8E-21 138.3 13.8 200 68-309 521-734 (764)
172 KOG1445 Tumor-specific antigen 99.7 3.5E-17 7.5E-22 139.6 11.1 196 23-273 599-799 (1012)
173 KOG1524 WD40 repeat-containing 99.7 2.7E-16 5.9E-21 131.7 15.1 185 85-316 76-274 (737)
174 KOG1188 WD40 repeat protein [G 99.7 1.5E-15 3.2E-20 120.7 15.8 198 18-275 41-245 (376)
175 KOG2394 WD40 protein DMR-N9 [G 99.7 1.1E-15 2.4E-20 128.1 15.3 211 17-277 185-457 (636)
176 KOG2139 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 116.1 20.7 240 20-316 113-363 (445)
177 KOG0644 Uncharacterized conser 99.7 4.6E-17 9.9E-22 142.7 6.2 188 68-315 186-455 (1113)
178 KOG4227 WD40 repeat protein [G 99.7 8.1E-16 1.8E-20 124.4 12.8 174 68-274 52-227 (609)
179 KOG0322 G-protein beta subunit 99.7 4.9E-16 1.1E-20 119.3 10.4 157 85-271 166-322 (323)
180 KOG1007 WD repeat protein TSSC 99.7 3E-15 6.5E-20 116.5 14.7 205 68-316 59-277 (370)
181 KOG1523 Actin-related protein 99.7 8.4E-15 1.8E-19 115.5 16.7 206 14-275 19-239 (361)
182 KOG0307 Vesicle coat complex C 99.7 7.1E-16 1.5E-20 139.6 11.8 201 11-275 123-330 (1049)
183 KOG1587 Cytoplasmic dynein int 99.7 1.2E-14 2.6E-19 127.5 18.8 248 8-317 246-505 (555)
184 KOG3881 Uncharacterized conser 99.7 1.8E-14 3.9E-19 116.5 17.7 202 19-277 117-325 (412)
185 KOG1517 Guanine nucleotide bin 99.6 3E-14 6.4E-19 128.4 20.2 237 15-317 1073-1323(1387)
186 PRK01742 tolB translocation pr 99.6 4.2E-14 9E-19 124.1 20.9 201 26-317 183-390 (429)
187 KOG1538 Uncharacterized conser 99.6 7.8E-14 1.7E-18 120.2 21.5 227 25-316 31-281 (1081)
188 KOG1524 WD40 repeat-containing 99.6 1.4E-14 2.9E-19 121.7 16.4 170 71-289 103-272 (737)
189 KOG0650 WD40 repeat nucleolar 99.6 2.8E-15 6.1E-20 127.2 11.9 203 68-316 396-668 (733)
190 KOG0322 G-protein beta subunit 99.6 8.7E-15 1.9E-19 112.5 13.5 244 19-316 27-311 (323)
191 PRK11028 6-phosphogluconolacto 99.6 5.8E-13 1.3E-17 113.2 25.6 190 84-317 91-292 (330)
192 KOG2919 Guanine nucleotide-bin 99.6 4.4E-14 9.4E-19 111.7 16.8 208 78-317 55-269 (406)
193 KOG1963 WD40 repeat protein [G 99.6 3.8E-14 8.2E-19 125.3 18.0 197 80-316 24-310 (792)
194 KOG0771 Prolactin regulatory e 99.6 2.1E-14 4.5E-19 117.2 15.1 195 17-273 156-355 (398)
195 KOG1538 Uncharacterized conser 99.6 5E-14 1.1E-18 121.3 17.6 198 75-316 15-240 (1081)
196 COG2319 FOG: WD40 repeat [Gene 99.6 8.2E-13 1.8E-17 115.3 25.5 186 24-278 131-320 (466)
197 KOG2110 Uncharacterized conser 99.6 4.6E-13 9.9E-18 107.8 21.2 165 95-316 69-236 (391)
198 KOG1310 WD40 repeat protein [G 99.6 1.6E-14 3.5E-19 121.6 13.2 178 66-272 44-231 (758)
199 PF08662 eIF2A: Eukaryotic tra 99.6 2.8E-13 6E-18 105.2 19.0 117 128-279 59-186 (194)
200 PRK11028 6-phosphogluconolacto 99.6 2.2E-12 4.8E-17 109.6 26.3 226 20-316 5-245 (330)
201 KOG0649 WD40 repeat protein [G 99.6 6.6E-13 1.4E-17 101.2 20.1 160 75-274 117-276 (325)
202 COG2319 FOG: WD40 repeat [Gene 99.6 1.7E-12 3.7E-17 113.3 26.2 218 17-316 77-302 (466)
203 KOG1272 WD40-repeat-containing 99.6 1.1E-14 2.3E-19 120.3 8.2 184 19-275 143-326 (545)
204 KOG1587 Cytoplasmic dynein int 99.6 2.7E-13 5.9E-18 119.1 17.2 206 18-273 306-517 (555)
205 KOG2394 WD40 protein DMR-N9 [G 99.5 2E-13 4.4E-18 114.7 14.9 185 83-308 184-384 (636)
206 KOG2110 Uncharacterized conser 99.5 5.3E-12 1.1E-16 101.7 21.3 151 16-227 96-249 (391)
207 PRK04922 tolB translocation pr 99.5 2.8E-12 6.1E-17 112.8 21.7 171 85-316 216-396 (433)
208 KOG0290 Conserved WD40 repeat- 99.5 5.4E-13 1.2E-17 104.2 14.9 199 6-262 152-356 (364)
209 PRK03629 tolB translocation pr 99.5 4.7E-12 1E-16 111.0 22.3 202 28-316 180-391 (429)
210 PRK05137 tolB translocation pr 99.5 9.5E-12 2.1E-16 109.6 23.5 171 85-316 214-394 (435)
211 PRK02889 tolB translocation pr 99.5 5.5E-12 1.2E-16 110.7 21.8 171 85-316 208-388 (427)
212 KOG1354 Serine/threonine prote 99.5 3.9E-13 8.5E-18 107.3 12.6 216 75-316 28-290 (433)
213 KOG2139 WD40 repeat protein [G 99.5 2E-12 4.4E-17 103.9 16.2 183 85-315 111-297 (445)
214 KOG4227 WD40 repeat protein [G 99.5 2.9E-12 6.4E-17 104.1 16.8 155 17-226 68-225 (609)
215 KOG1310 WD40 repeat protein [G 99.5 2.2E-13 4.8E-18 114.9 10.5 167 121-316 43-219 (758)
216 PF08662 eIF2A: Eukaryotic tra 99.5 7.6E-12 1.6E-16 97.2 17.4 99 191-317 59-162 (194)
217 KOG1963 WD40 repeat protein [G 99.5 1E-11 2.2E-16 110.3 20.0 201 71-317 204-417 (792)
218 KOG1240 Protein kinase contain 99.5 1.5E-11 3.3E-16 112.8 21.3 217 15-283 1059-1284(1431)
219 KOG2111 Uncharacterized conser 99.5 4.6E-11 9.9E-16 94.7 21.2 167 94-316 75-244 (346)
220 KOG3881 Uncharacterized conser 99.5 2.5E-11 5.3E-16 98.6 20.2 190 85-317 116-309 (412)
221 KOG1240 Protein kinase contain 99.5 9.6E-12 2.1E-16 114.1 19.6 197 60-283 1032-1236(1431)
222 KOG4547 WD40 repeat-containing 99.5 1.5E-11 3.3E-16 104.7 19.1 184 84-316 5-207 (541)
223 PRK01742 tolB translocation pr 99.4 5.5E-12 1.2E-16 110.7 16.5 161 93-316 183-350 (429)
224 KOG1354 Serine/threonine prote 99.4 4.7E-12 1E-16 101.2 13.9 275 12-316 93-423 (433)
225 KOG0644 Uncharacterized conser 99.4 5.8E-14 1.3E-18 123.6 3.4 119 120-272 182-300 (1113)
226 KOG0974 WD-repeat protein WDR6 99.4 6.5E-12 1.4E-16 113.4 16.2 189 18-273 100-289 (967)
227 PRK05137 tolB translocation pr 99.4 7.7E-11 1.7E-15 103.9 20.4 163 95-317 183-352 (435)
228 KOG4547 WD40 repeat-containing 99.4 5.1E-11 1.1E-15 101.6 18.2 206 18-273 6-221 (541)
229 TIGR02800 propeller_TolB tol-p 99.4 1.1E-10 2.4E-15 102.6 21.0 185 71-316 188-382 (417)
230 KOG2111 Uncharacterized conser 99.4 8.7E-11 1.9E-15 93.1 17.3 105 149-274 150-258 (346)
231 PRK03629 tolB translocation pr 99.4 2.1E-10 4.5E-15 100.7 21.4 161 85-308 255-427 (429)
232 PRK02889 tolB translocation pr 99.3 2.9E-10 6.4E-15 99.8 20.1 149 123-316 190-345 (427)
233 KOG2321 WD40 repeat protein [G 99.3 1.5E-10 3.2E-15 98.7 17.2 183 85-316 147-331 (703)
234 KOG4497 Uncharacterized conser 99.3 3E-10 6.5E-15 90.6 17.2 239 11-315 55-378 (447)
235 KOG1409 Uncharacterized conser 99.3 1.5E-10 3.2E-15 92.8 15.4 209 19-276 38-274 (404)
236 KOG0280 Uncharacterized conser 99.3 3.7E-10 8E-15 88.7 16.6 188 76-316 125-319 (339)
237 KOG1272 WD40-repeat-containing 99.3 1.4E-11 3.1E-16 102.1 9.0 188 73-317 210-398 (545)
238 KOG4497 Uncharacterized conser 99.3 6E-11 1.3E-15 94.5 11.8 204 20-317 22-229 (447)
239 PRK00178 tolB translocation pr 99.3 1.6E-09 3.5E-14 95.5 22.0 171 85-316 211-391 (430)
240 KOG1334 WD40 repeat protein [G 99.3 6.2E-11 1.3E-15 98.9 11.7 246 7-317 189-455 (559)
241 PRK04792 tolB translocation pr 99.3 1.5E-09 3.3E-14 95.6 20.6 185 71-316 216-410 (448)
242 KOG2321 WD40 repeat protein [G 99.2 1E-09 2.2E-14 93.6 17.2 202 71-315 50-290 (703)
243 PRK04922 tolB translocation pr 99.2 9.5E-10 2.1E-14 96.9 17.8 161 94-316 184-353 (433)
244 PRK01029 tolB translocation pr 99.2 7.3E-09 1.6E-13 90.7 22.0 171 88-315 203-387 (428)
245 COG5170 CDC55 Serine/threonine 99.2 1.3E-10 2.9E-15 92.0 9.6 220 76-316 30-298 (460)
246 PF02239 Cytochrom_D1: Cytochr 99.2 1.1E-08 2.5E-13 87.4 22.1 174 85-316 6-189 (369)
247 PF02239 Cytochrom_D1: Cytochr 99.2 4.4E-08 9.6E-13 83.8 25.5 198 20-279 9-209 (369)
248 KOG0280 Uncharacterized conser 99.2 9.4E-09 2E-13 81.0 19.1 192 25-273 44-242 (339)
249 KOG1064 RAVE (regulator of V-A 99.2 8.1E-11 1.7E-15 111.9 9.2 175 20-274 2223-2400(2439)
250 KOG4532 WD40-like repeat conta 99.2 5.8E-09 1.3E-13 81.2 17.6 179 85-311 85-263 (344)
251 TIGR02800 propeller_TolB tol-p 99.2 6.2E-09 1.4E-13 91.6 19.6 149 122-317 183-340 (417)
252 KOG0974 WD-repeat protein WDR6 99.1 3.5E-09 7.5E-14 96.2 17.0 182 75-316 90-276 (967)
253 PF10282 Lactonase: Lactonase, 99.1 3.9E-07 8.5E-12 77.9 28.7 196 78-317 92-310 (345)
254 PF10282 Lactonase: Lactonase, 99.1 4.2E-07 9E-12 77.7 28.3 240 21-317 3-263 (345)
255 PRK00178 tolB translocation pr 99.1 2.2E-08 4.8E-13 88.4 20.7 149 123-316 193-348 (430)
256 PRK04792 tolB translocation pr 99.1 2E-08 4.3E-13 88.7 20.1 149 123-316 212-367 (448)
257 COG2706 3-carboxymuconate cycl 99.1 2.7E-07 5.8E-12 75.1 24.1 234 26-317 15-262 (346)
258 PRK01029 tolB translocation pr 99.1 4.8E-08 1E-12 85.7 21.5 135 129-309 281-425 (428)
259 KOG2041 WD40 repeat protein [G 99.1 1.1E-09 2.4E-14 95.9 10.9 169 58-273 18-187 (1189)
260 KOG2315 Predicted translation 99.0 2.2E-08 4.7E-13 85.5 16.7 184 23-277 190-395 (566)
261 KOG1409 Uncharacterized conser 99.0 1.8E-08 4E-13 81.0 14.1 102 86-225 167-269 (404)
262 COG4946 Uncharacterized protei 99.0 1.2E-07 2.6E-12 79.7 19.4 168 84-314 332-504 (668)
263 KOG1334 WD40 repeat protein [G 99.0 2.3E-09 5.1E-14 89.7 8.8 218 12-273 240-467 (559)
264 KOG4190 Uncharacterized conser 99.0 4.7E-09 1E-13 89.6 10.2 177 68-277 731-911 (1034)
265 KOG2695 WD40 repeat protein [G 99.0 3.7E-09 8E-14 85.0 8.8 155 88-280 228-384 (425)
266 KOG1064 RAVE (regulator of V-A 99.0 5.9E-09 1.3E-13 99.8 11.0 162 70-277 2206-2371(2439)
267 KOG4714 Nucleoporin [Nuclear s 98.9 2.6E-09 5.7E-14 82.6 6.8 163 70-273 87-255 (319)
268 PF00400 WD40: WD domain, G-be 98.9 5.2E-09 1.1E-13 58.5 6.3 38 233-270 2-39 (39)
269 TIGR02658 TTQ_MADH_Hv methylam 98.9 4.9E-06 1.1E-10 70.1 26.4 226 27-316 27-317 (352)
270 KOG2314 Translation initiation 98.9 3.5E-07 7.5E-12 78.3 19.1 96 206-317 455-556 (698)
271 KOG3914 WD repeat protein WDR4 98.9 4.9E-08 1.1E-12 80.1 13.4 159 77-277 67-228 (390)
272 PRK04043 tolB translocation pr 98.9 6.7E-07 1.4E-11 78.1 21.1 180 74-316 189-385 (419)
273 COG2706 3-carboxymuconate cycl 98.9 8.3E-06 1.8E-10 66.6 25.3 195 76-317 92-309 (346)
274 PF15492 Nbas_N: Neuroblastoma 98.9 1.7E-06 3.6E-11 68.5 20.2 211 16-276 7-263 (282)
275 KOG2066 Vacuolar assembly/sort 98.9 1E-07 2.2E-12 84.9 14.9 147 84-280 49-195 (846)
276 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.3E-11 68.9 17.6 164 75-274 161-333 (344)
277 PLN02919 haloacid dehalogenase 98.8 7.3E-06 1.6E-10 79.5 26.4 219 76-315 627-875 (1057)
278 KOG4190 Uncharacterized conser 98.8 2.2E-08 4.8E-13 85.5 8.2 201 15-273 745-949 (1034)
279 PF00400 WD40: WD domain, G-be 98.8 2.8E-08 6.1E-13 55.5 6.1 38 119-163 2-39 (39)
280 KOG2114 Vacuolar assembly/sort 98.7 1E-06 2.2E-11 79.3 16.8 190 83-316 34-233 (933)
281 COG4946 Uncharacterized protei 98.7 3.8E-06 8.3E-11 70.9 19.2 189 77-316 271-461 (668)
282 PLN02919 haloacid dehalogenase 98.7 3.5E-06 7.6E-11 81.7 21.5 184 77-276 687-892 (1057)
283 KOG2315 Predicted translation 98.7 4.6E-06 9.9E-11 71.7 19.4 99 191-317 270-373 (566)
284 KOG2695 WD40 repeat protein [G 98.7 7.5E-08 1.6E-12 77.7 8.1 124 72-231 252-379 (425)
285 KOG2041 WD40 repeat protein [G 98.7 6.2E-07 1.4E-11 79.2 14.2 252 15-315 24-325 (1189)
286 KOG0309 Conserved WD40 repeat- 98.7 8.7E-08 1.9E-12 84.6 8.4 200 12-273 122-340 (1081)
287 KOG1275 PAB-dependent poly(A) 98.7 6.4E-07 1.4E-11 81.1 13.7 186 16-271 146-341 (1118)
288 PF08450 SGL: SMP-30/Gluconola 98.7 0.00012 2.6E-09 59.6 27.4 171 86-312 53-239 (246)
289 KOG0309 Conserved WD40 repeat- 98.7 2.3E-07 5E-12 82.0 10.5 150 85-273 82-233 (1081)
290 COG5170 CDC55 Serine/threonine 98.6 3.1E-07 6.6E-12 73.3 9.9 231 12-271 94-366 (460)
291 PF07433 DUF1513: Protein of u 98.6 4.5E-05 9.8E-10 62.3 22.5 206 17-283 17-258 (305)
292 KOG4714 Nucleoporin [Nuclear s 98.6 5.5E-07 1.2E-11 70.1 10.4 73 75-166 182-255 (319)
293 TIGR02658 TTQ_MADH_Hv methylam 98.6 4.6E-05 1E-09 64.3 22.4 231 12-278 53-336 (352)
294 KOG0882 Cyclophilin-related pe 98.6 2.5E-07 5.5E-12 77.2 8.4 210 85-317 21-295 (558)
295 PF04762 IKI3: IKI3 family; I 98.6 8.8E-06 1.9E-10 77.6 19.8 199 73-316 76-322 (928)
296 KOG3914 WD repeat protein WDR4 98.6 1.4E-06 3.1E-11 71.7 12.4 100 89-231 127-226 (390)
297 PF11768 DUF3312: Protein of u 98.5 6.1E-05 1.3E-09 65.7 22.1 75 190-275 258-332 (545)
298 COG5354 Uncharacterized protei 98.5 8E-06 1.7E-10 69.5 16.3 181 23-277 198-400 (561)
299 PRK04043 tolB translocation pr 98.5 4.2E-05 9.1E-10 66.9 21.0 141 130-317 189-337 (419)
300 KOG1275 PAB-dependent poly(A) 98.5 3.2E-06 7E-11 76.7 13.9 173 83-317 146-331 (1118)
301 KOG1912 WD40 repeat protein [G 98.5 6E-06 1.3E-10 73.8 14.3 152 86-272 28-186 (1062)
302 KOG1912 WD40 repeat protein [G 98.4 5.1E-05 1.1E-09 68.1 18.4 156 20-224 29-184 (1062)
303 COG5354 Uncharacterized protei 98.4 5.7E-05 1.2E-09 64.5 17.4 57 244-315 317-376 (561)
304 KOG2314 Translation initiation 98.4 3.5E-05 7.6E-10 66.5 16.3 67 85-175 223-300 (698)
305 PF15492 Nbas_N: Neuroblastoma 98.4 0.00068 1.5E-08 54.1 24.1 210 80-317 5-248 (282)
306 PF06977 SdiA-regulated: SdiA- 98.3 0.00067 1.5E-08 54.6 22.0 203 57-316 24-239 (248)
307 PF04762 IKI3: IKI3 family; I 98.3 0.0001 2.2E-09 70.5 19.6 154 78-272 215-379 (928)
308 PF13360 PQQ_2: PQQ-like domai 98.3 0.0004 8.7E-09 56.0 20.3 195 18-277 37-235 (238)
309 KOG1832 HIV-1 Vpr-binding prot 98.3 1.5E-06 3.3E-11 78.6 6.3 168 68-276 1097-1295(1516)
310 TIGR03300 assembly_YfgL outer 98.2 0.00016 3.5E-09 62.8 16.9 135 84-269 241-376 (377)
311 TIGR03300 assembly_YfgL outer 98.1 0.00086 1.9E-08 58.3 20.2 147 85-277 191-343 (377)
312 KOG1645 RING-finger-containing 98.1 7.8E-05 1.7E-09 61.9 11.4 87 61-168 182-269 (463)
313 KOG1920 IkappaB kinase complex 98.0 0.00052 1.1E-08 64.8 17.3 198 73-316 69-307 (1265)
314 KOG3621 WD40 repeat-containing 98.0 6.7E-05 1.4E-09 66.6 11.0 160 83-279 44-204 (726)
315 PF11768 DUF3312: Protein of u 98.0 0.00011 2.4E-09 64.1 12.2 74 126-227 257-330 (545)
316 KOG1008 Uncharacterized conser 98.0 3.4E-06 7.4E-11 73.8 2.2 149 84-273 115-276 (783)
317 PF08450 SGL: SMP-30/Gluconola 98.0 0.0064 1.4E-07 49.4 25.5 144 84-273 12-165 (246)
318 KOG1645 RING-finger-containing 97.9 0.0001 2.3E-09 61.2 9.5 80 121-226 186-266 (463)
319 KOG1008 Uncharacterized conser 97.9 4.8E-06 1E-10 72.9 1.9 147 85-271 71-224 (783)
320 KOG4640 Anaphase-promoting com 97.9 6.5E-05 1.4E-09 65.9 8.3 74 59-172 25-99 (665)
321 smart00320 WD40 WD40 repeats. 97.9 5.7E-05 1.2E-09 40.9 5.3 37 234-270 4-40 (40)
322 KOG1920 IkappaB kinase complex 97.8 0.0019 4.2E-08 61.2 17.1 115 132-275 199-325 (1265)
323 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0043 9.3E-08 42.6 14.6 104 131-267 2-109 (111)
324 PF03178 CPSF_A: CPSF A subuni 97.8 0.0056 1.2E-07 51.9 18.7 149 85-273 43-203 (321)
325 PF13360 PQQ_2: PQQ-like domai 97.8 0.0064 1.4E-07 49.0 18.1 149 85-277 37-196 (238)
326 PF08596 Lgl_C: Lethal giant l 97.8 0.0098 2.1E-07 51.6 19.8 231 16-273 12-291 (395)
327 KOG0882 Cyclophilin-related pe 97.8 0.0019 4.1E-08 54.8 14.6 208 20-283 68-316 (558)
328 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.013 2.7E-07 46.6 18.3 141 84-271 23-164 (354)
329 KOG2066 Vacuolar assembly/sort 97.7 0.0028 6E-08 57.6 16.2 147 83-273 82-234 (846)
330 PF08553 VID27: VID27 cytoplas 97.7 0.0011 2.4E-08 61.6 14.0 140 146-315 492-635 (794)
331 KOG2114 Vacuolar assembly/sort 97.7 0.021 4.5E-07 52.7 21.4 153 85-273 78-244 (933)
332 KOG1832 HIV-1 Vpr-binding prot 97.7 3.7E-05 8E-10 70.1 4.4 128 118-278 1091-1220(1516)
333 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 39.4 5.3 38 119-163 3-40 (40)
334 PF08596 Lgl_C: Lethal giant l 97.7 0.021 4.6E-07 49.6 20.9 193 75-281 4-252 (395)
335 COG0823 TolB Periplasmic compo 97.7 0.0024 5.3E-08 55.8 15.2 156 75-275 195-361 (425)
336 COG0823 TolB Periplasmic compo 97.7 0.0013 2.8E-08 57.5 13.1 144 128-316 192-343 (425)
337 KOG3617 WD40 and TPR repeat-co 97.7 0.0017 3.7E-08 59.4 13.8 68 59-165 64-131 (1416)
338 KOG3621 WD40 repeat-containing 97.7 0.0005 1.1E-08 61.3 10.2 112 144-273 42-155 (726)
339 PF07433 DUF1513: Protein of u 97.7 0.011 2.3E-07 48.7 17.2 140 146-317 16-181 (305)
340 PF08553 VID27: VID27 cytoplas 97.6 0.0026 5.7E-08 59.2 15.1 152 83-272 492-647 (794)
341 PRK11138 outer membrane biogen 97.6 0.0097 2.1E-07 52.1 18.1 137 84-271 256-393 (394)
342 KOG4640 Anaphase-promoting com 97.6 0.00055 1.2E-08 60.3 9.0 75 193-277 22-97 (665)
343 PRK02888 nitrous-oxide reducta 97.5 0.02 4.4E-07 51.7 18.1 75 193-273 322-405 (635)
344 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.017 3.6E-07 39.8 13.9 95 84-222 15-110 (111)
345 PHA02713 hypothetical protein; 97.4 0.0075 1.6E-07 55.1 15.4 72 206-281 462-542 (557)
346 PF04053 Coatomer_WDAD: Coatom 97.4 0.021 4.5E-07 50.3 17.2 131 85-274 45-175 (443)
347 PF04841 Vps16_N: Vps16, N-ter 97.4 0.078 1.7E-06 46.6 20.7 31 243-273 217-247 (410)
348 KOG3617 WD40 and TPR repeat-co 97.3 0.00061 1.3E-08 62.2 6.9 104 144-272 24-131 (1416)
349 PRK02888 nitrous-oxide reducta 97.2 0.15 3.3E-06 46.3 20.6 34 242-275 320-354 (635)
350 KOG2395 Protein involved in va 97.1 0.01 2.2E-07 51.7 11.7 135 149-315 348-488 (644)
351 PF03178 CPSF_A: CPSF A subuni 97.1 0.14 3.1E-06 43.4 19.7 152 129-317 24-191 (321)
352 PF04053 Coatomer_WDAD: Coatom 97.1 0.034 7.4E-07 49.0 15.0 136 123-316 27-162 (443)
353 COG3391 Uncharacterized conser 97.1 0.17 3.7E-06 44.0 20.7 182 77-316 78-270 (381)
354 PF00780 CNH: CNH domain; Int 97.0 0.14 3.1E-06 42.3 21.2 167 83-280 6-173 (275)
355 PRK11138 outer membrane biogen 97.0 0.17 3.6E-06 44.4 18.9 193 19-276 122-316 (394)
356 KOG2395 Protein involved in va 97.0 0.022 4.8E-07 49.7 12.4 153 84-272 345-500 (644)
357 KOG4441 Proteins containing BT 96.9 0.082 1.8E-06 48.5 16.5 153 84-280 381-554 (571)
358 COG3391 Uncharacterized conser 96.8 0.31 6.7E-06 42.5 21.6 197 16-278 85-289 (381)
359 PF14583 Pectate_lyase22: Olig 96.8 0.29 6.2E-06 41.9 20.8 208 5-276 36-276 (386)
360 PHA03098 kelch-like protein; P 96.8 0.23 5E-06 45.4 18.3 71 207-281 437-520 (534)
361 PF12894 Apc4_WD40: Anaphase-p 96.7 0.006 1.3E-07 35.0 5.1 32 242-273 11-42 (47)
362 COG3204 Uncharacterized protei 96.7 0.26 5.6E-06 40.2 19.5 201 75-313 88-298 (316)
363 PHA02713 hypothetical protein; 96.7 0.27 5.8E-06 45.2 18.0 112 146-280 351-497 (557)
364 PF12894 Apc4_WD40: Anaphase-p 96.5 0.013 2.9E-07 33.6 5.4 34 128-169 11-44 (47)
365 KOG4441 Proteins containing BT 96.5 0.19 4.2E-06 46.1 15.6 156 81-280 282-460 (571)
366 KOG2079 Vacuolar assembly/sort 96.5 0.012 2.6E-07 55.5 7.9 75 84-178 99-173 (1206)
367 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.023 4.9E-07 49.0 9.1 106 206-317 2-119 (353)
368 KOG2079 Vacuolar assembly/sort 96.4 0.021 4.5E-07 54.0 8.9 102 146-271 98-202 (1206)
369 KOG2444 WD40 repeat protein [G 96.4 0.018 4E-07 44.7 7.0 107 146-273 69-178 (238)
370 PF05096 Glu_cyclase_2: Glutam 96.3 0.45 9.8E-06 38.5 18.8 184 85-316 57-249 (264)
371 COG3386 Gluconolactonase [Carb 96.2 0.5 1.1E-05 39.6 15.2 147 84-272 37-193 (307)
372 PF14870 PSII_BNR: Photosynthe 96.1 0.64 1.4E-05 38.8 15.5 155 73-269 145-301 (302)
373 COG3204 Uncharacterized protei 96.1 0.59 1.3E-05 38.2 16.1 125 124-273 81-211 (316)
374 PRK13616 lipoprotein LpqB; Pro 96.1 0.8 1.7E-05 42.3 17.3 163 74-271 351-524 (591)
375 PF12234 Rav1p_C: RAVE protein 96.1 0.22 4.8E-06 45.6 13.4 112 84-224 41-154 (631)
376 PHA03098 kelch-like protein; P 96.1 0.81 1.7E-05 41.9 17.5 70 207-280 389-472 (534)
377 PRK13616 lipoprotein LpqB; Pro 95.9 0.52 1.1E-05 43.4 15.4 105 129-268 350-472 (591)
378 TIGR02604 Piru_Ver_Nterm putat 95.9 0.79 1.7E-05 39.7 15.9 58 243-315 124-200 (367)
379 KOG3630 Nuclear pore complex, 95.9 0.23 5E-06 47.7 13.0 101 195-315 159-260 (1405)
380 KOG2444 WD40 repeat protein [G 95.9 0.04 8.6E-07 43.0 6.8 103 85-224 71-175 (238)
381 PHA02790 Kelch-like protein; P 95.8 0.64 1.4E-05 41.9 15.4 64 206-276 406-474 (480)
382 PF06977 SdiA-regulated: SdiA- 95.8 0.85 1.8E-05 37.0 16.4 126 122-273 15-148 (248)
383 PF05694 SBP56: 56kDa selenium 95.7 1.3 2.8E-05 38.6 21.2 104 155-274 220-344 (461)
384 cd00216 PQQ_DH Dehydrogenases 95.7 1.6 3.5E-05 39.5 17.8 164 85-276 111-323 (488)
385 PF00930 DPPIV_N: Dipeptidyl p 95.5 1.4 3.1E-05 37.9 19.1 92 206-315 246-344 (353)
386 PF10647 Gmad1: Lipoprotein Lp 95.4 1.2 2.5E-05 36.4 17.6 150 130-317 25-184 (253)
387 PF14870 PSII_BNR: Photosynthe 95.4 1.3 2.9E-05 37.0 15.5 149 128-317 144-294 (302)
388 PHA02790 Kelch-like protein; P 95.4 2 4.3E-05 38.8 17.1 68 206-280 361-431 (480)
389 COG3490 Uncharacterized protei 95.3 1.3 2.8E-05 36.2 13.7 147 131-317 70-244 (366)
390 COG3386 Gluconolactonase [Carb 95.3 1.5 3.3E-05 36.8 18.6 85 193-282 164-253 (307)
391 KOG4649 PQQ (pyrrolo-quinoline 95.2 1.3 2.9E-05 35.6 16.8 69 84-174 63-132 (354)
392 KOG4499 Ca2+-binding protein R 95.1 0.58 1.3E-05 37.0 10.8 94 77-200 162-262 (310)
393 KOG4499 Ca2+-binding protein R 95.1 1.3 2.8E-05 35.1 14.6 95 195-308 161-263 (310)
394 PF15390 DUF4613: Domain of un 95.1 2 4.3E-05 38.8 15.1 131 126-277 54-191 (671)
395 PF15390 DUF4613: Domain of un 95.0 1.1 2.5E-05 40.2 13.5 109 193-316 58-173 (671)
396 PF06433 Me-amine-dh_H: Methyl 95.0 1.9 4.1E-05 36.4 19.6 165 85-278 148-326 (342)
397 PF10168 Nup88: Nuclear pore c 95.0 3.4 7.3E-05 39.2 21.6 139 19-168 34-182 (717)
398 KOG3630 Nuclear pore complex, 94.8 0.14 3.1E-06 49.1 8.1 155 74-259 102-260 (1405)
399 COG3490 Uncharacterized protei 94.8 1.8 4E-05 35.3 17.6 164 79-282 120-320 (366)
400 PF12234 Rav1p_C: RAVE protein 94.5 1.2 2.5E-05 41.2 12.8 105 206-316 39-146 (631)
401 PF02897 Peptidase_S9_N: Proly 94.5 3.2 7E-05 36.6 18.5 115 131-274 126-262 (414)
402 PF00780 CNH: CNH domain; Int 94.5 2.3 5.1E-05 35.0 14.7 107 145-273 5-123 (275)
403 PF14727 PHTB1_N: PTHB1 N-term 94.2 3.6 7.9E-05 36.1 18.5 166 84-272 37-204 (418)
404 KOG1916 Nuclear protein, conta 94.0 0.29 6.4E-06 45.9 8.0 160 92-273 151-324 (1283)
405 TIGR02604 Piru_Ver_Nterm putat 94.0 3.8 8.2E-05 35.6 14.7 62 192-263 124-204 (367)
406 TIGR03075 PQQ_enz_alc_DH PQQ-d 93.9 5 0.00011 36.7 20.4 164 85-277 121-338 (527)
407 PF10313 DUF2415: Uncharacteri 93.9 0.27 5.8E-06 27.4 4.8 31 243-273 1-34 (43)
408 cd00216 PQQ_DH Dehydrogenases 93.9 4.9 0.00011 36.4 18.6 26 149-174 303-328 (488)
409 TIGR03548 mutarot_permut cycli 93.9 3.6 7.8E-05 34.9 17.6 56 206-263 170-233 (323)
410 PF08728 CRT10: CRT10; InterP 93.9 5.8 0.00013 37.3 16.4 122 145-272 112-246 (717)
411 KOG1897 Damage-specific DNA bi 93.7 6.9 0.00015 37.7 21.8 104 147-274 787-900 (1096)
412 PF05096 Glu_cyclase_2: Glutam 93.2 4 8.6E-05 33.3 19.0 68 85-176 101-168 (264)
413 TIGR03547 muta_rot_YjhT mutatr 93.1 5.2 0.00011 34.3 18.0 74 206-279 199-305 (346)
414 PF14761 HPS3_N: Hermansky-Pud 93.0 3.6 7.8E-05 32.3 11.6 107 148-276 29-167 (215)
415 PF14727 PHTB1_N: PTHB1 N-term 92.4 7.3 0.00016 34.3 15.9 164 15-224 35-202 (418)
416 PF07569 Hira: TUP1-like enhan 92.3 2.6 5.7E-05 33.5 10.3 74 146-226 21-95 (219)
417 PRK13684 Ycf48-like protein; P 92.3 6.5 0.00014 33.6 15.3 155 74-270 174-329 (334)
418 PF02897 Peptidase_S9_N: Proly 92.1 7.9 0.00017 34.1 23.5 110 14-167 133-262 (414)
419 PF13449 Phytase-like: Esteras 91.9 6.7 0.00014 33.4 13.0 120 191-315 19-163 (326)
420 PF10168 Nup88: Nuclear pore c 91.7 3.6 7.9E-05 39.0 11.9 77 191-273 84-180 (717)
421 COG5276 Uncharacterized conser 91.4 7.2 0.00016 32.2 17.2 144 128-315 86-230 (370)
422 PF08728 CRT10: CRT10; InterP 91.3 5.2 0.00011 37.5 12.2 125 82-225 112-245 (717)
423 KOG2247 WD40 repeat-containing 91.2 0.042 9.2E-07 47.7 -0.9 144 57-265 37-181 (615)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 1.6 3.5E-05 38.2 8.6 88 72-175 307-408 (415)
425 PF14583 Pectate_lyase22: Olig 91.1 9.5 0.00021 33.0 17.6 67 85-173 49-118 (386)
426 COG4590 ABC-type uncharacteriz 91.1 0.82 1.8E-05 39.8 6.5 157 122-315 214-374 (733)
427 PLN00033 photosystem II stabil 90.9 11 0.00023 33.2 17.0 115 128-269 280-396 (398)
428 PRK14131 N-acetylneuraminic ac 90.7 11 0.00023 32.9 16.5 57 207-263 221-289 (376)
429 KOG1897 Damage-specific DNA bi 90.3 18 0.0004 35.1 17.8 127 128-272 530-659 (1096)
430 COG5167 VID27 Protein involved 90.3 5.8 0.00013 35.4 10.8 136 146-315 478-620 (776)
431 PF11715 Nup160: Nucleoporin N 89.6 2.5 5.5E-05 38.9 9.0 31 146-176 229-259 (547)
432 PLN00033 photosystem II stabil 89.6 14 0.0003 32.5 16.4 102 193-317 282-389 (398)
433 KOG1916 Nuclear protein, conta 89.1 0.23 5E-06 46.6 1.8 125 124-272 128-265 (1283)
434 COG5167 VID27 Protein involved 89.0 9.4 0.0002 34.1 11.1 149 87-272 483-632 (776)
435 PF05694 SBP56: 56kDa selenium 88.9 16 0.00034 32.3 14.6 63 192-260 312-391 (461)
436 PF11715 Nup160: Nucleoporin N 88.9 1.9 4.2E-05 39.6 7.7 69 207-276 157-252 (547)
437 KOG1900 Nuclear pore complex, 88.8 7.3 0.00016 38.8 11.4 85 128-227 178-273 (1311)
438 KOG1900 Nuclear pore complex, 88.8 6 0.00013 39.3 10.8 75 191-273 178-273 (1311)
439 PF14781 BBS2_N: Ciliary BBSom 88.3 7.6 0.00017 28.0 12.3 110 145-275 8-128 (136)
440 PF03022 MRJP: Major royal jel 88.3 14 0.0003 30.9 18.0 60 193-259 187-252 (287)
441 PF14781 BBS2_N: Ciliary BBSom 88.2 7.8 0.00017 27.9 12.6 113 84-223 10-122 (136)
442 PF14761 HPS3_N: Hermansky-Pud 88.1 11 0.00024 29.6 15.4 115 85-225 29-162 (215)
443 KOG2377 Uncharacterized conser 87.6 19 0.00042 31.8 13.1 124 127-277 65-190 (657)
444 PF10313 DUF2415: Uncharacteri 87.4 3.1 6.8E-05 23.2 4.9 31 129-166 1-34 (43)
445 COG4257 Vgb Streptogramin lyas 86.9 16 0.00034 30.0 15.2 82 193-281 190-271 (353)
446 PF07995 GSDH: Glucose / Sorbo 86.7 19 0.00041 30.7 12.0 117 131-264 4-135 (331)
447 PF14269 Arylsulfotran_2: Aryl 86.6 18 0.00039 30.4 15.2 40 130-176 145-184 (299)
448 PF03088 Str_synth: Strictosid 86.4 3.9 8.5E-05 27.2 6.0 42 260-316 33-74 (89)
449 TIGR03074 PQQ_membr_DH membran 86.0 34 0.00074 33.0 19.8 22 256-277 461-482 (764)
450 PF07569 Hira: TUP1-like enhan 85.8 9.5 0.00021 30.3 9.0 71 206-279 20-102 (219)
451 PF14655 RAB3GAP2_N: Rab3 GTPa 85.8 20 0.00043 31.7 11.5 48 124-178 303-350 (415)
452 KOG4460 Nuclear pore complex, 85.7 25 0.00053 31.8 11.8 27 130-163 105-131 (741)
453 PRK13684 Ycf48-like protein; P 85.3 23 0.00049 30.3 15.6 104 192-317 215-321 (334)
454 PF02333 Phytase: Phytase; In 85.3 24 0.00053 30.6 19.9 120 130-273 157-291 (381)
455 PF14779 BBS1: Ciliary BBSome 82.6 16 0.00035 29.7 9.0 51 127-177 175-225 (257)
456 PF12657 TFIIIC_delta: Transcr 82.5 15 0.00033 27.9 8.7 36 130-166 87-122 (173)
457 PF10647 Gmad1: Lipoprotein Lp 81.5 27 0.00059 28.5 18.3 115 130-268 67-192 (253)
458 PLN02193 nitrile-specifier pro 81.5 41 0.00088 30.4 16.7 70 207-280 328-418 (470)
459 KOG2377 Uncharacterized conser 81.5 38 0.00083 30.1 11.8 75 190-271 65-139 (657)
460 PF12657 TFIIIC_delta: Transcr 81.3 13 0.00028 28.3 7.9 30 244-273 87-122 (173)
461 smart00564 PQQ beta-propeller 80.6 4.7 0.0001 20.5 3.8 24 149-172 8-31 (33)
462 PF07676 PD40: WD40-like Beta 80.5 6.9 0.00015 20.9 5.1 29 241-269 7-38 (39)
463 TIGR02276 beta_rpt_yvtn 40-res 80.2 7.4 0.00016 21.0 5.6 27 252-278 1-28 (42)
464 PF11635 Med16: Mediator compl 78.4 68 0.0015 31.1 19.6 132 129-267 181-345 (753)
465 KOG3616 Selective LIM binding 78.1 5.2 0.00011 37.4 5.4 69 193-273 16-84 (1636)
466 COG4590 ABC-type uncharacteriz 78.0 37 0.0008 30.1 10.0 108 83-227 279-387 (733)
467 TIGR03075 PQQ_enz_alc_DH PQQ-d 77.9 50 0.0011 30.4 11.7 69 84-175 69-148 (527)
468 KOG2280 Vacuolar assembly/sort 77.6 66 0.0014 30.5 14.9 31 243-273 217-247 (829)
469 TIGR03606 non_repeat_PQQ dehyd 76.8 56 0.0012 29.3 12.5 55 193-254 31-90 (454)
470 PLN02153 epithiospecifier prot 76.8 47 0.001 28.4 19.4 71 206-280 136-233 (341)
471 PF03022 MRJP: Major royal jel 76.7 43 0.00093 28.0 21.0 169 128-314 60-251 (287)
472 KOG2280 Vacuolar assembly/sort 76.3 72 0.0016 30.3 13.7 42 118-167 73-114 (829)
473 PF13449 Phytase-like: Esteras 76.1 48 0.001 28.2 17.7 128 131-272 87-249 (326)
474 TIGR03074 PQQ_membr_DH membran 76.0 57 0.0012 31.6 11.8 30 147-176 194-223 (764)
475 PF06433 Me-amine-dh_H: Methyl 75.4 51 0.0011 28.2 17.4 110 144-275 103-216 (342)
476 PF08801 Nucleoporin_N: Nup133 75.1 60 0.0013 28.8 14.1 31 243-273 190-220 (422)
477 PF01011 PQQ: PQQ enzyme repea 74.1 9.5 0.0002 20.4 3.9 28 149-176 2-29 (38)
478 TIGR03606 non_repeat_PQQ dehyd 73.5 69 0.0015 28.8 19.4 33 128-167 29-61 (454)
479 COG3823 Glutamine cyclotransfe 72.0 47 0.001 26.2 13.5 21 297-317 227-248 (262)
480 KOG1896 mRNA cleavage and poly 69.6 1.3E+02 0.0029 30.4 18.9 159 84-276 1046-1217(1366)
481 PF04841 Vps16_N: Vps16, N-ter 69.2 83 0.0018 27.9 22.7 54 192-254 217-271 (410)
482 KOG2247 WD40 repeat-containing 68.7 1 2.2E-05 39.5 -1.1 65 85-170 88-152 (615)
483 PF07995 GSDH: Glucose / Sorbo 68.0 29 0.00064 29.6 7.5 75 192-267 253-330 (331)
484 KOG1520 Predicted alkaloid syn 67.5 83 0.0018 27.3 11.7 41 261-316 196-236 (376)
485 PLN02153 epithiospecifier prot 67.3 80 0.0017 27.0 18.0 58 218-279 217-291 (341)
486 PF12768 Rax2: Cortical protei 67.2 73 0.0016 26.5 13.3 93 157-270 16-121 (281)
487 PF05935 Arylsulfotrans: Aryls 67.1 1E+02 0.0022 28.0 16.1 34 245-278 273-307 (477)
488 PF14157 YmzC: YmzC-like prote 66.9 22 0.00047 21.7 4.4 32 207-238 28-59 (63)
489 KOG1983 Tomosyn and related SN 65.7 73 0.0016 32.0 10.4 26 251-276 243-268 (993)
490 PF10214 Rrn6: RNA polymerase 63.4 1.5E+02 0.0033 28.9 18.9 83 191-278 145-238 (765)
491 KOG3616 Selective LIM binding 63.2 19 0.00042 33.9 5.6 34 243-276 15-48 (1636)
492 PF02333 Phytase: Phytase; In 63.2 1E+02 0.0023 26.9 19.2 159 84-272 68-237 (381)
493 PRK10115 protease 2; Provision 62.1 1.5E+02 0.0033 28.4 20.5 72 73-167 127-209 (686)
494 COG5308 NUP170 Nuclear pore co 61.7 1.7E+02 0.0036 28.8 14.3 28 129-165 182-209 (1263)
495 COG5290 IkappaB kinase complex 61.4 78 0.0017 30.4 8.9 95 132-255 250-349 (1243)
496 COG3823 Glutamine cyclotransfe 60.9 82 0.0018 24.9 10.7 138 90-260 107-247 (262)
497 PF05787 DUF839: Bacterial pro 60.8 1.4E+02 0.003 27.6 11.1 18 298-315 501-518 (524)
498 TIGR03548 mutarot_permut cycli 59.9 1.1E+02 0.0023 25.9 17.7 71 207-280 123-202 (323)
499 COG5308 NUP170 Nuclear pore co 59.8 73 0.0016 31.0 8.6 29 242-272 181-209 (1263)
500 PF12341 DUF3639: Protein of u 59.2 13 0.00028 18.4 2.2 16 85-100 12-27 (27)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-43 Score=278.12 Aligned_cols=244 Identities=25% Similarity=0.352 Sum_probs=211.0
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
..|.+ ....+++||.|.++|+||+.+.....+.. . |+.. ++|++|+|++ +.||+
T Consensus 121 ~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~K--g--H~~W---VlcvawsPDg------------------k~iAS 174 (480)
T KOG0271|consen 121 VQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCK--G--HKNW---VLCVAWSPDG------------------KKIAS 174 (480)
T ss_pred EEecC-CCceEEecCCCceEEeeccCCCCcceeec--C--CccE---EEEEEECCCc------------------chhhc
Confidence 34454 56779999999999999998876544433 2 6776 6669999999 99999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
|+.||+|++||.+++++ .-+.+.+|...|++++|.|.+. .+..++|++++.||.++|||+..+++
T Consensus 175 G~~dg~I~lwdpktg~~-------------~g~~l~gH~K~It~Lawep~hl--~p~~r~las~skDg~vrIWd~~~~~~ 239 (480)
T KOG0271|consen 175 GSKDGSIRLWDPKTGQQ-------------IGRALRGHKKWITALAWEPLHL--VPPCRRLASSSKDGSVRIWDTKLGTC 239 (480)
T ss_pred cccCCeEEEecCCCCCc-------------ccccccCcccceeEEeeccccc--CCCccceecccCCCCEEEEEccCceE
Confidence 99999999999998863 4578899999999999999987 45667999999999999999999888
Q ss_pred eeeecccccccccce-----------------------------------------------------------------
Q 021036 170 QKSAEAHCVPFSLLK----------------------------------------------------------------- 184 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~----------------------------------------------------------------- 184 (318)
+..+.+|..++++++
T Consensus 240 ~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 240 VRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 888888877776654
Q ss_pred -----------------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 185 -----------------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 185 -----------------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
.-..+|..-|+.+.|+ ||++++|+++.|..|++|
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fS-----Pd~r~IASaSFDkSVkLW 394 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFS-----PDGRYIASASFDKSVKLW 394 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEEC-----CCccEEEEeecccceeee
Confidence 1123567778888888 999999999999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
+.++++ .+.+|.+|-+.|+.++|+.|.++|++|+.|.++++|++++.++.. ++++|.+.|++
T Consensus 395 --~g~tGk--~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~--------------DLpGh~DEVf~ 456 (480)
T KOG0271|consen 395 --DGRTGK--FLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQ--------------DLPGHADEVFA 456 (480)
T ss_pred --eCCCcc--hhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecc--------------cCCCCCceEEE
Confidence 788888 788999999999999999999999999999999999999988774 78889999999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
+.|+|||+.+++|.
T Consensus 457 vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 457 VDWSPDGQRVASGG 470 (480)
T ss_pred EEecCCCceeecCC
Confidence 99999999999885
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.1e-37 Score=248.20 Aligned_cols=238 Identities=19% Similarity=0.225 Sum_probs=203.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccc--------------------------cC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVL--------------------------RL 68 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~--------------------------~~ 68 (318)
.+...++|||-+|.+++|+.++...++++.. |... +.++.|+|.. .+
T Consensus 185 ~ds~~laT~swsG~~kvW~~~~~~~~~~l~g----H~~~---v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l 257 (459)
T KOG0272|consen 185 RDSKHLATGSWSGLVKVWSVPQCNLLQTLRG----HTSR---VGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDL 257 (459)
T ss_pred cCCCeEEEeecCCceeEeecCCcceeEEEec----cccc---eeeEEEccCCCccceeeeccCCceeeeccCCCcchhhh
Confidence 3456689999999999999998866655543 4444 2336666652 25
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+|...|..++|.|+|++|++++.|.+-++||++++. .+....+|...|.+++| .++|.
T Consensus 258 ~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~--------------ElL~QEGHs~~v~~iaf-------~~DGS 316 (459)
T KOG0272|consen 258 EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS--------------ELLLQEGHSKGVFSIAF-------QPDGS 316 (459)
T ss_pred hcchhhheeeeecCCCceeeecccccchhhcccccch--------------hhHhhcccccccceeEe-------cCCCc
Confidence 6889999999999999999999999999999999854 33456799999999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+++||+.|..-+|||+++|.++..+.+|.. +|..+.|+ |+|..+|+|+.|++++|||+.
T Consensus 317 L~~tGGlD~~~RvWDlRtgr~im~L~gH~k--------------~I~~V~fs-----PNGy~lATgs~Dnt~kVWDLR-- 375 (459)
T KOG0272|consen 317 LAATGGLDSLGRVWDLRTGRCIMFLAGHIK--------------EILSVAFS-----PNGYHLATGSSDNTCKVWDLR-- 375 (459)
T ss_pred eeeccCccchhheeecccCcEEEEeccccc--------------ceeeEeEC-----CCceEEeecCCCCcEEEeeec--
Confidence 999999999999999999999988877665 89999999 999999999999999999554
Q ss_pred CCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
..+ ++..+.+|..-|+.|.|+| .|.+|+|++.|++++||...+..... .+.||.+.|.+++.+
T Consensus 376 ~r~--~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~k--------------sLaGHe~kV~s~Dis 439 (459)
T KOG0272|consen 376 MRS--ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLK--------------SLAGHEGKVISLDIS 439 (459)
T ss_pred ccc--cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccch--------------hhcCCccceEEEEec
Confidence 444 5788999999999999999 58899999999999999988765553 566788899999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
||+++|+++.
T Consensus 440 ~d~~~i~t~s 449 (459)
T KOG0272|consen 440 PDSQAIATSS 449 (459)
T ss_pred cCCceEEEec
Confidence 9999999873
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=4.2e-35 Score=252.62 Aligned_cols=248 Identities=17% Similarity=0.215 Sum_probs=197.3
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhcccccc---ccceeeeeccc---ccCCCCcccccccCCCCCc
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAM---LHSLAVAWSPV---LRLSSKKYPVPQNGSSNWF 84 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~---~~~~~~~w~p~---~~~~~~~~~v~~~~~s~~~ 84 (318)
++.+... .++.|-.|-.|++|.+...+..+.-........+.. .....+.-+.. ..+.+|.+||..+.|+|+.
T Consensus 385 ~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~ 463 (707)
T KOG0263|consen 385 EFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDR 463 (707)
T ss_pred eecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccc
Confidence 3444333 678888999999998875432222221111111000 00000111111 1277899999999999999
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++|++++.|++||+|.+.+. ..+..+++|..+|+.+.| +|.|.+|+|++.|++-++|..
T Consensus 464 rfLlScSED~svRLWsl~t~--------------s~~V~y~GH~~PVwdV~F-------~P~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 464 RFLLSCSEDSSVRLWSLDTW--------------SCLVIYKGHLAPVWDVQF-------APRGYYFATASHDQTARLWST 522 (707)
T ss_pred cceeeccCCcceeeeecccc--------------eeEEEecCCCcceeeEEe-------cCCceEEEecCCCceeeeeec
Confidence 99999999999999999984 456788999999999999 899999999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.....+..+.+|- +.|.|+.|+ |+..++++|+.|.+|++| |..++. .++.|.||.++
T Consensus 523 d~~~PlRifaghl--------------sDV~cv~FH-----PNs~Y~aTGSsD~tVRlW--Dv~~G~--~VRiF~GH~~~ 579 (707)
T KOG0263|consen 523 DHNKPLRIFAGHL--------------SDVDCVSFH-----PNSNYVATGSSDRTVRLW--DVSTGN--SVRIFTGHKGP 579 (707)
T ss_pred ccCCchhhhcccc--------------cccceEEEC-----CcccccccCCCCceEEEE--EcCCCc--EEEEecCCCCc
Confidence 9877777766554 489999999 999999999999999999 666776 67889999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|++++|+|+|++|++|+.||.|.+||+.++.+.. .+.+|.+.|+++.|+.||..||+|.
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~--------------~l~~Ht~ti~SlsFS~dg~vLasgg 638 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLANGSLVK--------------QLKGHTGTIYSLSFSRDGNVLASGG 638 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCCCcchh--------------hhhcccCceeEEEEecCCCEEEecC
Confidence 9999999999999999999999999999877653 4556777999999999999999985
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=5.6e-34 Score=218.20 Aligned_cols=231 Identities=18% Similarity=0.197 Sum_probs=189.8
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
++.+....+...++++|.|+++.+|++......... |..++.+|...|.++..+++|++.
T Consensus 19 t~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------------~~r~~~GHsH~v~dv~~s~dg~~a 78 (315)
T KOG0279|consen 19 TALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------------PVRRLTGHSHFVSDVVLSSDGNFA 78 (315)
T ss_pred EEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------------eeeeeeccceEecceEEccCCceE
Confidence 444555667888999999999999999876221111 233677899999999999999999
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++++.|+.+++||+.++ +..+.|.+|...|.+++| +++.+.+++|+.|.+|++|++-.+
T Consensus 79 lS~swD~~lrlWDl~~g--------------~~t~~f~GH~~dVlsva~-------s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLATG--------------ESTRRFVGHTKDVLSVAF-------STDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred EeccccceEEEEEecCC--------------cEEEEEEecCCceEEEEe-------cCCCceeecCCCcceeeeeeeccc
Confidence 99999999999999985 466789999999999999 899999999999999999999765
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
......... +...|++++|+ |+ ..+|++++.|++|++| |+++.+ ....+.+|.+.+
T Consensus 138 ck~t~~~~~-------------~~~WVscvrfs-----P~~~~p~Ivs~s~DktvKvW--nl~~~~--l~~~~~gh~~~v 195 (315)
T KOG0279|consen 138 CKYTIHEDS-------------HREWVSCVRFS-----PNESNPIIVSASWDKTVKVW--NLRNCQ--LRTTFIGHSGYV 195 (315)
T ss_pred EEEEEecCC-------------CcCcEEEEEEc-----CCCCCcEEEEccCCceEEEE--ccCCcc--hhhccccccccE
Confidence 443322211 14489999999 66 6799999999999999 566655 566788999999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+++||||..+++|+.||.+.+||++.++...... |...|.+++|+|+..+|+.+
T Consensus 196 ~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~---------------a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 196 NTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE---------------AFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred EEEEECCCCCEEecCCCCceEEEEEccCCceeEecc---------------CCCeEeeEEecCCceeEeec
Confidence 999999999999999999999999999876643222 34589999999998887754
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.9e-33 Score=216.62 Aligned_cols=237 Identities=19% Similarity=0.226 Sum_probs=196.3
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc---------------------------
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR--------------------------- 67 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~--------------------------- 67 (318)
.+...++++|+||.+.|||.-+......+..+ ... +..++++|.+.
T Consensus 65 ~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~----s~W---VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v 137 (343)
T KOG0286|consen 65 TDSRRIVSASQDGKLIVWDSFTTNKVHAIPLP----SSW---VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRV 137 (343)
T ss_pred CCcCeEEeeccCCeEEEEEcccccceeEEecC----cee---EEEEEECCCCCeEEecCcCceeEEEeccccccccccee
Confidence 45677999999999999999988777766652 223 22356666542
Q ss_pred ---CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 68 ---LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 68 ---~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
+.+|.+-+.|+.|-.+ ..|++++.|.+.-+||+++ ++.++.|.+|.+.|.++++ +
T Consensus 138 ~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~--------------g~~~~~f~GH~gDV~slsl-------~ 195 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIET--------------GQQTQVFHGHTGDVMSLSL-------S 195 (343)
T ss_pred eeeecCccceeEEEEEcCC-CceEecCCCceEEEEEccc--------------ceEEEEecCCcccEEEEec-------C
Confidence 5578888999998884 5678899999999999999 4577899999999999999 6
Q ss_pred C-CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 145 N-PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 145 ~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
| +++.|++|+.|+..++||++.+.+.+.|.+|+. .|+.++|. |+|.-|++|+.|++.++|
T Consensus 196 p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes--------------DINsv~ff-----P~G~afatGSDD~tcRly 256 (343)
T KOG0286|consen 196 PSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES--------------DINSVRFF-----PSGDAFATGSDDATCRLY 256 (343)
T ss_pred CCCCCeEEecccccceeeeeccCcceeEeeccccc--------------ccceEEEc-----cCCCeeeecCCCceeEEE
Confidence 6 889999999999999999999999999988776 89999999 999999999999999999
Q ss_pred eeccCCCeeeEeeeee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 224 KCDISCNKFDKVGSYN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
|++... .+..+. .-..+|++++||..|++|++|..|.++.+||.-.++... .+.+|..+|
T Consensus 257 --DlRaD~--~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg--------------~L~GHeNRv 318 (343)
T KOG0286|consen 257 --DLRADQ--ELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVG--------------VLAGHENRV 318 (343)
T ss_pred --eecCCc--EEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEE--------------EeeccCCee
Confidence 555554 344443 234689999999999999999999999999986655442 344577799
Q ss_pred eEEEEcCCCcEEEEEe
Q 021036 302 LGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~~ 317 (318)
.++..+|||.-+++|.
T Consensus 319 Scl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 319 SCLGVSPDGMAVATGS 334 (343)
T ss_pred EEEEECCCCcEEEecc
Confidence 9999999999999974
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-34 Score=230.82 Aligned_cols=208 Identities=19% Similarity=0.226 Sum_probs=182.3
Q ss_pred CCCC-CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------
Q 021036 12 MKDS-NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR----------------------- 67 (318)
Q Consensus 12 ~~~~-~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~----------------------- 67 (318)
+-|. +...++|++.||++++|++.+...++.+.. |...+. .++|+|++.
T Consensus 225 fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~g----H~~RVs---~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL 297 (459)
T KOG0272|consen 225 FHPVDSDLNLATASADGTVKLWKLSQETPLQDLEG----HLARVS---RVAFHPSGKFLGTASFDSTWRLWDLETKSELL 297 (459)
T ss_pred EccCCCccceeeeccCCceeeeccCCCcchhhhhc----chhhhe---eeeecCCCceeeecccccchhhcccccchhhH
Confidence 4444 355789999999999999998877777664 444433 389999876
Q ss_pred -CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 -LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 -~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
..+|...|.+++|.++|.++++|+.|..-+|||++++. .+..+.+|..+|.+++| +|+
T Consensus 298 ~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr--------------~im~L~gH~k~I~~V~f-------sPN 356 (459)
T KOG0272|consen 298 LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGR--------------CIMFLAGHIKEILSVAF-------SPN 356 (459)
T ss_pred hhcccccccceeEecCCCceeeccCccchhheeecccCc--------------EEEEecccccceeeEeE-------CCC
Confidence 33799999999999999999999999999999999965 56788999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~ 225 (318)
|..|+||+.|++++|||++..+++.++..|.. -|+.++|+ | .|.+|++++.|+++++|
T Consensus 357 Gy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--------------lVS~Vk~~-----p~~g~fL~TasyD~t~kiW-- 415 (459)
T KOG0272|consen 357 GYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--------------LVSQVKYS-----PQEGYFLVTASYDNTVKIW-- 415 (459)
T ss_pred ceEEeecCCCCcEEEeeecccccceecccccc--------------hhhheEec-----ccCCeEEEEcccCcceeee--
Confidence 99999999999999999999888888877665 88999999 6 78999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
..++. .++.++.||++.|.++++++++.+|++++.|+++++|.
T Consensus 416 s~~~~--~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 416 STRTW--SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred cCCCc--ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 54444 48999999999999999999999999999999999995
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=9.2e-33 Score=208.44 Aligned_cols=249 Identities=18% Similarity=0.213 Sum_probs=191.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccc-------ccccc-----------ceeeeecccccCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASR-------SAMLH-----------SLAVAWSPVLRLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~-------~~~~~-----------~~~~~w~p~~~~~~~~~~v~~ 77 (318)
+.-.++++|.|.+||+|...+|.|..++........ ...+. +..-.-+|...+.+|...|+.
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVta 88 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTA 88 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEE
Confidence 334578999999999999999999888764321000 00000 000111223335578889999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
+.|..+|+++++|++||+++|||++...+ .+. -.|.++|+++.. .|+...|++|..+|
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~--------------qR~-~~~~spVn~vvl-------hpnQteLis~dqsg 146 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC--------------QRN-YQHNSPVNTVVL-------HPNQTELISGDQSG 146 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc--------------chh-ccCCCCcceEEe-------cCCcceEEeecCCC
Confidence 99999999999999999999999997443 233 356799999999 78888999999999
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc--CCCeeeEe
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI--SCNKFDKV 235 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~ 235 (318)
.|++||+....+...+.... ..+|.++.+. |+|.+++.+...|..++|++-. ....++++
T Consensus 147 ~irvWDl~~~~c~~~liPe~-------------~~~i~sl~v~-----~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 147 NIRVWDLGENSCTHELIPED-------------DTSIQSLTVM-----PDGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred cEEEEEccCCccccccCCCC-------------CcceeeEEEc-----CCCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 99999999876655543332 2378999999 9999999999999999996422 12345688
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..++.|++.+....+||++++||+++.|.+++||+..+--... ..+.+|...+..++||.||+||++
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle-------------~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLE-------------LVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeE-------------EEeecCCceEEeeeeccCccEEEe
Confidence 8899999999999999999999999999999999987751111 133446679999999999999999
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 276 as 277 (311)
T KOG0315|consen 276 AS 277 (311)
T ss_pred cC
Confidence 74
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-33 Score=223.08 Aligned_cols=169 Identities=24% Similarity=0.356 Sum_probs=146.6
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.|+.|+|+|..|++|+.|.++|+||+.+ ..+..+.++|...|.|++| +|+|
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T--------------eTp~~t~KgH~~WVlcvaw-------sPDg 169 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT--------------ETPLFTCKGHKNWVLCVAW-------SPDG 169 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCC--------------CCcceeecCCccEEEEEEE-------CCCc
Confidence 778999999999999999999999999999999998 4467889999999999999 9999
Q ss_pred cEEEEEeCCCcEEEEECCCcceee-eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+.|++|+.||+|++||..+|+++. .+.+ |...|++++|.+---.|...+||+++.||.|+|| |
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~g--------------H~K~It~Lawep~hl~p~~r~las~skDg~vrIW--d 233 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRG--------------HKKWITALAWEPLHLVPPCRRLASSSKDGSVRIW--D 233 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccC--------------cccceeEEeecccccCCCccceecccCCCCEEEE--E
Confidence 999999999999999999887653 3444 4559999999843333667899999999999999 5
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
...++ .+..+.+|+.+|+|+.|--+| +|++|+.|++|++|+...+.+
T Consensus 234 ~~~~~--~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 234 TKLGT--CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ccCce--EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence 55555 677889999999999997665 899999999999999876443
No 9
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-32 Score=224.85 Aligned_cols=248 Identities=19% Similarity=0.241 Sum_probs=188.4
Q ss_pred CCCCCccceEEeeCCCceeEeecCCC--CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSN--CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
+.+.....+++++.|-+.|+|++... .+...... .|.-.. +..=.|+ ...|++++++.+|.+||+
T Consensus 186 WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l---rh~~~~----~~~s~~~------nkdVT~L~Wn~~G~~Lat 252 (524)
T KOG0273|consen 186 WNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL---RHCIRE----GGKSVPS------NKDVTSLDWNNDGTLLAT 252 (524)
T ss_pred cCchhhhhhhccCCccceeeeeehhhccccchhhhh---hhhhhh----hcccCCc------cCCcceEEecCCCCeEEE
Confidence 34444455788999999999998752 11111100 011000 0000011 123444444444599999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
|+.||.++||+... .++.++..|.++|.++.| +..|.+|++++.|+++.+||..+++.
T Consensus 253 G~~~G~~riw~~~G---------------~l~~tl~~HkgPI~slKW-------nk~G~yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 253 GSEDGEARIWNKDG---------------NLISTLGQHKGPIFSLKW-------NKKGTYILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred eecCcEEEEEecCc---------------hhhhhhhccCCceEEEEE-------cCCCCEEEeccCCccEEEEeccCceE
Confidence 99999999999874 566788999999999999 99999999999999999999999988
Q ss_pred eeeecccccc-cccce--------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 170 QKSAEAHCVP-FSLLK--------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 170 ~~~~~~~~~~-~~~~~--------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
.+.+..+..+ ..+.+ ....+|..+|.++.|+ |.+.+|++++.|+++++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n-----~tg~LLaS~SdD~Tlki 385 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN-----PTGSLLASCSDDGTLKI 385 (524)
T ss_pred EEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC-----CCCceEEEecCCCeeEe
Confidence 8877766655 21211 2445799999999999 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCC---------CEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG---------CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
| .+.... ....+.+|...|+.+.|+|.| ..+++++.|++|++||+..+.... .
T Consensus 386 W--s~~~~~--~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~--------------~ 447 (524)
T KOG0273|consen 386 W--SMGQSN--SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH--------------T 447 (524)
T ss_pred e--ecCCCc--chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE--------------e
Confidence 9 544444 677889999999999999964 389999999999999998877664 3
Q ss_pred CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+..|..+|++|+|+|+|+++|+|.
T Consensus 448 f~kH~~pVysvafS~~g~ylAsGs 471 (524)
T KOG0273|consen 448 LMKHQEPVYSVAFSPNGRYLASGS 471 (524)
T ss_pred eccCCCceEEEEecCCCcEEEecC
Confidence 455778999999999999999985
No 10
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.6e-31 Score=200.66 Aligned_cols=239 Identities=19% Similarity=0.195 Sum_probs=181.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++++.|+.||+|+...+......+.-.-+|+.. +..++|+|.+ ++|++++.|.++.|
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrs---VRsvAwsp~g------------------~~La~aSFD~t~~I 87 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRS---VRSVAWSPHG------------------RYLASASFDATVVI 87 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchhe---eeeeeecCCC------------------cEEEEeeccceEEE
Confidence 68999999999999988633322221111123333 3346666666 99999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|.-..++ .+.+..+.+|...|.|++| +.+|++|++|++|+.|.||.+..+......
T Consensus 88 w~k~~~e------------fecv~~lEGHEnEVK~Vaw-------s~sG~~LATCSRDKSVWiWe~deddEfec~----- 143 (312)
T KOG0645|consen 88 WKKEDGE------------FECVATLEGHENEVKCVAW-------SASGNYLATCSRDKSVWIWEIDEDDEFECI----- 143 (312)
T ss_pred eecCCCc------------eeEEeeeeccccceeEEEE-------cCCCCEEEEeeCCCeEEEEEecCCCcEEEE-----
Confidence 9988776 6788999999999999999 999999999999999999999865433322
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.++..|...|..+.|+ |...+|++++.|.+|++|.-+. ...+..++++.+|...|.+++|++.|..|+
T Consensus 144 ------aVL~~HtqDVK~V~WH-----Pt~dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G~rl~ 211 (312)
T KOG0645|consen 144 ------AVLQEHTQDVKHVIWH-----PTEDLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIGSRLV 211 (312)
T ss_pred ------eeeccccccccEEEEc-----CCcceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCCceEE
Confidence 1223455589999999 9999999999999999995332 777889999999999999999999999999
Q ss_pred EecCCCcEEEEEec-------CCceeeeecCCCCCCcc-ccc-----------------------cCCCcceeeeEEEEc
Q 021036 259 SCSQDNFVRSWIFH-------GNSLSQVSIPTNTPGLQ-SCT-----------------------DLPDAFVSCLGMAVS 307 (318)
Q Consensus 259 s~~~d~~v~iwd~~-------~~~~~~~~~~~~~~~~~-~~~-----------------------~~~~h~~~v~~v~~s 307 (318)
++++|++++||-.. .+.+..+++. ...++ +.. ....|...|++|+|+
T Consensus 212 s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~ 289 (312)
T KOG0645|consen 212 SCSDDGTVSIWRLYTDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWN 289 (312)
T ss_pred EecCCcceEeeeeccCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEc
Confidence 99999999999843 2444444443 11111 100 112688899999999
Q ss_pred CC-CcEEEEE
Q 021036 308 PG-NLVVAMV 316 (318)
Q Consensus 308 p~-~~~l~~~ 316 (318)
|. ...|++|
T Consensus 290 p~~~~~L~s~ 299 (312)
T KOG0645|consen 290 PKVSNRLASG 299 (312)
T ss_pred CCCCCceeec
Confidence 94 4555554
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.2e-31 Score=215.16 Aligned_cols=235 Identities=16% Similarity=0.232 Sum_probs=186.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.||.+|||+.+... ...+.. |++.+.. ++|+..+ ++|++++.||+
T Consensus 246 ~G~~LatG~~~G~~riw~~~G~l-~~tl~~----HkgPI~s---lKWnk~G------------------~yilS~~vD~t 299 (524)
T KOG0273|consen 246 DGTLLATGSEDGEARIWNKDGNL-ISTLGQ----HKGPIFS---LKWNKKG------------------TYILSGGVDGT 299 (524)
T ss_pred CCCeEEEeecCcEEEEEecCchh-hhhhhc----cCCceEE---EEEcCCC------------------CEEEeccCCcc
Confidence 35668999999999999987543 233332 5665443 7787777 99999999999
Q ss_pred EEEEEccCCccccccc--cc---------------c----------CCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 96 VSLWRICVPKCYSVED--CK---------------V----------PTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~--~~---------------~----------~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+.+||..++++.+... .. . -..-.++.++.+|.++|.++.| .+.+.
T Consensus 300 tilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~-------n~tg~ 372 (524)
T KOG0273|consen 300 TILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW-------NPTGS 372 (524)
T ss_pred EEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEE-------CCCCc
Confidence 9999998877644311 00 0 0112456788899999999999 89999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec----cCCCCceEEEEEeCCCcEEEee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP----VQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~----~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+|++++.|++++||.+......+.+..|.. .|+.+.|++. +.|..+..+++++.|++|++|
T Consensus 373 LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk--------------ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lw- 437 (524)
T KOG0273|consen 373 LLASCSDDGTLKIWSMGQSNSVHDLQAHSK--------------EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLW- 437 (524)
T ss_pred eEEEecCCCeeEeeecCCCcchhhhhhhcc--------------ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEE-
Confidence 999999999999999988888887777665 6778888731 223346689999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|...+. ++..|..|..+|++++|+|+|+++|+|+.||.|.+|+++++++.+..... +.|..+
T Consensus 438 -dv~~gv--~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~---------------~~Ifel 499 (524)
T KOG0273|consen 438 -DVESGV--PIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGT---------------GGIFEL 499 (524)
T ss_pred -EccCCc--eeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCC---------------CeEEEE
Confidence 666776 88899999999999999999999999999999999999998887644333 368999
Q ss_pred EEcCCCcEEEEE
Q 021036 305 AVSPGNLVVAMV 316 (318)
Q Consensus 305 ~~sp~~~~l~~~ 316 (318)
+|+.+|.+|..+
T Consensus 500 ~Wn~~G~kl~~~ 511 (524)
T KOG0273|consen 500 CWNAAGDKLGAC 511 (524)
T ss_pred EEcCCCCEEEEE
Confidence 999999887754
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-31 Score=208.02 Aligned_cols=244 Identities=14% Similarity=0.201 Sum_probs=196.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccce----------------eeeecccc------cCCCCccc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSL----------------AVAWSPVL------RLSSKKYP 74 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~w~p~~------~~~~~~~~ 74 (318)
.-.++++|.|+++++||..++++...+.. |.+.+.++. .-.|+-.. .+.+|..-
T Consensus 120 ~~~v~~as~d~tikv~D~~tg~~e~~LrG----Ht~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~ 195 (406)
T KOG0295|consen 120 EALVVSASEDATIKVFDTETGELERSLRG----HTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG 195 (406)
T ss_pred ceEEEEecCCceEEEEEccchhhhhhhhc----cccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc
Confidence 34468888999999999999988555443 333322200 11233222 15578888
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++.+-|-|.++++++.|.+|+.|++.++. .+.++.+|...|.-++. ..+|.++++++
T Consensus 196 vS~V~f~P~gd~ilS~srD~tik~We~~tg~--------------cv~t~~~h~ewvr~v~v-------~~DGti~As~s 254 (406)
T KOG0295|consen 196 VSSVFFLPLGDHILSCSRDNTIKAWECDTGY--------------CVKTFPGHSEWVRMVRV-------NQDGTIIASCS 254 (406)
T ss_pred eeeEEEEecCCeeeecccccceeEEecccce--------------eEEeccCchHhEEEEEe-------cCCeeEEEecC
Confidence 9999999999999999999999999999965 56889999999999999 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC----------CCceEEEEEeCCCcEEEee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS----------PRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~----------~~~~~l~~~~~dg~i~vw~ 224 (318)
.|.+|++|-+.++++...+..|+. +|.+++|.+...- ..+.++.+++.|++|++|
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh--------------~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~w- 319 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEH--------------PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIW- 319 (406)
T ss_pred CCceEEEEEeccchhhhhhhcccc--------------ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEE-
Confidence 999999999999988877776665 6777777632111 124699999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|+.++. ++.++.+|...|..++|+|.|+||+++.+|+++++||++++.+..... .|..-|+++
T Consensus 320 -dv~tg~--cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~--------------ah~hfvt~l 382 (406)
T KOG0295|consen 320 -DVSTGM--CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE--------------AHEHFVTSL 382 (406)
T ss_pred -eccCCe--EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC--------------CCcceeEEE
Confidence 677876 788999999999999999999999999999999999999877654322 244588999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
.|+.+..++++|+
T Consensus 383 Dfh~~~p~VvTGs 395 (406)
T KOG0295|consen 383 DFHKTAPYVVTGS 395 (406)
T ss_pred ecCCCCceEEecc
Confidence 9999999999985
No 13
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1e-31 Score=231.84 Aligned_cols=232 Identities=21% Similarity=0.288 Sum_probs=185.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...++++|+|+++|+|.+.+..++.... +|.+||.++.|+|.|-++|+++.|++
T Consensus 462 d~rfLlScSED~svRLWsl~t~s~~V~y~-------------------------GH~~PVwdV~F~P~GyYFatas~D~t 516 (707)
T KOG0263|consen 462 DRRFLLSCSEDSSVRLWSLDTWSCLVIYK-------------------------GHLAPVWDVQFAPRGYYFATASHDQT 516 (707)
T ss_pred cccceeeccCCcceeeeecccceeEEEec-------------------------CCCcceeeEEecCCceEEEecCCCce
Confidence 34558999999999999999877633332 45556666666666699999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.++|.... ..+++.+.+|.+.|.|+.| .|+..|+++||.|.+|++||+.+|..+..|.+
T Consensus 517 ArLWs~d~--------------~~PlRifaghlsDV~cv~F-------HPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 517 ARLWSTDH--------------NKPLRIFAGHLSDVDCVSF-------HPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred eeeeeccc--------------CCchhhhcccccccceEEE-------CCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 99999987 3577899999999999999 89999999999999999999999999888765
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
|. ++|.+++|+ |+|.+|++|+.||.|.+| |+.+++ .+..+.+|++.|.++.|+.+|.
T Consensus 576 H~--------------~~V~al~~S-----p~Gr~LaSg~ed~~I~iW--Dl~~~~--~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 576 HK--------------GPVTALAFS-----PCGRYLASGDEDGLIKIW--DLANGS--LVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred CC--------------CceEEEEEc-----CCCceEeecccCCcEEEE--EcCCCc--chhhhhcccCceeEEEEecCCC
Confidence 54 599999999 999999999999999999 677776 7888999999999999999999
Q ss_pred EEEEecCCCcEEEEEecCCcee----eeecC------CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS----QVSIP------TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~----~~~~~------~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.||+|+.|.+|++||+..-... .+... +....-..-..+.....+|.++.|.-.+..|+.|
T Consensus 633 vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 633 VLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred EEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccceeEEec
Confidence 9999999999999998652221 11000 0000000011223455699999999887777765
No 14
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1.3e-30 Score=223.78 Aligned_cols=242 Identities=19% Similarity=0.289 Sum_probs=197.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc---------------ceeeeecccc---cCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH---------------SLAVAWSPVL---RLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~w~p~~---~~~~~~~~v~~ 77 (318)
..+.+++|-.+|...+++++...+++.++..+......... .+...|.... ..++|...+.+
T Consensus 276 ~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~ 355 (893)
T KOG0291|consen 276 GTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITS 355 (893)
T ss_pred CceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceee
Confidence 34558899999999999999988887776654321111100 0112332221 15689999999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
++++|||+++|+|+.||.|+|||...+- ...++..|++.|+.+.| ...|+.+++++.||
T Consensus 356 l~YSpDgq~iaTG~eDgKVKvWn~~Sgf--------------C~vTFteHts~Vt~v~f-------~~~g~~llssSLDG 414 (893)
T KOG0291|consen 356 LAYSPDGQLIATGAEDGKVKVWNTQSGF--------------CFVTFTEHTSGVTAVQF-------TARGNVLLSSSLDG 414 (893)
T ss_pred EEECCCCcEEEeccCCCcEEEEeccCce--------------EEEEeccCCCceEEEEE-------EecCCEEEEeecCC
Confidence 9999999999999999999999999854 55789999999999999 89999999999999
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeeccCCCeeeEee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCDISCNKFDKVG 236 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~ 236 (318)
+|+.||+.......++..+.. ....+++.+ |.|.++..|+.|.. |.+| +.++++ .+.
T Consensus 415 tVRAwDlkRYrNfRTft~P~p-------------~QfscvavD-----~sGelV~AG~~d~F~IfvW--S~qTGq--llD 472 (893)
T KOG0291|consen 415 TVRAWDLKRYRNFRTFTSPEP-------------IQFSCVAVD-----PSGELVCAGAQDSFEIFVW--SVQTGQ--LLD 472 (893)
T ss_pred eEEeeeecccceeeeecCCCc-------------eeeeEEEEc-----CCCCEEEeeccceEEEEEE--EeecCe--eee
Confidence 999999999988888875542 256788888 89999999997765 8899 788888 777
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC--ceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.+.||+++|.+++|+|++..|++++.|.+|++||+-.. ....+.... .+..++|.|||+-||
T Consensus 473 iLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s----------------dvl~vsfrPdG~ela 536 (893)
T KOG0291|consen 473 ILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS----------------DVLAVSFRPDGKELA 536 (893)
T ss_pred hhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc----------------ceeEEEEcCCCCeEE
Confidence 89999999999999999999999999999999999654 555555433 789999999999998
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
++
T Consensus 537 Va 538 (893)
T KOG0291|consen 537 VA 538 (893)
T ss_pred EE
Confidence 75
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.98 E-value=1.8e-30 Score=199.00 Aligned_cols=228 Identities=16% Similarity=0.230 Sum_probs=168.0
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.++.+..+++|.|+++|+||+.+++..+.+. +|...|++++++++...+++|+.|
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~-------------------------GH~~dVlsva~s~dn~qivSGSrD 126 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFV-------------------------GHTKDVLSVAFSTDNRQIVSGSRD 126 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEE-------------------------ecCCceEEEEecCCCceeecCCCc
Confidence 3566778999999999999999986543333 344444444444444999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeec--cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.+|++|+..... ..++. .+.+.|+|++|.|.. ...+|++++.|++|++||+++-+...
T Consensus 127 kTiklwnt~g~c---------------k~t~~~~~~~~WVscvrfsP~~-----~~p~Ivs~s~DktvKvWnl~~~~l~~ 186 (315)
T KOG0279|consen 127 KTIKLWNTLGVC---------------KYTIHEDSHREWVSCVRFSPNE-----SNPIIVSASWDKTVKVWNLRNCQLRT 186 (315)
T ss_pred ceeeeeeecccE---------------EEEEecCCCcCcEEEEEEcCCC-----CCcEEEEccCCceEEEEccCCcchhh
Confidence 999999998532 22333 237899999994321 25689999999999999999988777
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+.+|. +.++.+.++ |||.+.++|+.||.+.+| |++.++ .++.+ +|...|.+++|+
T Consensus 187 ~~~gh~--------------~~v~t~~vS-----pDGslcasGgkdg~~~Lw--dL~~~k--~lysl-~a~~~v~sl~fs 242 (315)
T KOG0279|consen 187 TFIGHS--------------GYVNTVTVS-----PDGSLCASGGKDGEAMLW--DLNEGK--NLYSL-EAFDIVNSLCFS 242 (315)
T ss_pred cccccc--------------ccEEEEEEC-----CCCCEEecCCCCceEEEE--EccCCc--eeEec-cCCCeEeeEEec
Confidence 776554 489999999 999999999999999999 555655 45554 588899999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|+.-+|+.+ .+-.|+|||+.++... .+.....++ ..........+++|++||+.|.+|-
T Consensus 243 pnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~------s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 243 PNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP------SSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred CCceeEeec-cCCceEEEeccchhhhhhcccccccc------ccccCCcEEEEEEEcCCCcEEEeee
Confidence 997655544 4556999999886543 222211111 1111223678999999999998873
No 16
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.97 E-value=5.1e-30 Score=197.80 Aligned_cols=191 Identities=17% Similarity=0.233 Sum_probs=156.5
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|..++++|+|+++|+|+.|+...||++.+.+. ....+..+.+.+|.+.+.|..| .. ...|+|++
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~--------~g~~~v~r~l~gHtgylScC~f-------~d-D~~ilT~S 163 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA--------EGNVRVSRELAGHTGYLSCCRF-------LD-DNHILTGS 163 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccc--------cccceeeeeecCccceeEEEEE-------cC-CCceEecC
Confidence 55666667777777776666666666664310 0113455678999999999999 55 55899999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
.|.+..+||+++++....+.+|.. .|.+|.++ | +++.|++|+.|+..++| |++.+.
T Consensus 164 GD~TCalWDie~g~~~~~f~GH~g--------------DV~slsl~-----p~~~ntFvSg~cD~~aklW--D~R~~~-- 220 (343)
T KOG0286|consen 164 GDMTCALWDIETGQQTQVFHGHTG--------------DVMSLSLS-----PSDGNTFVSGGCDKSAKLW--DVRSGQ-- 220 (343)
T ss_pred CCceEEEEEcccceEEEEecCCcc--------------cEEEEecC-----CCCCCeEEecccccceeee--eccCcc--
Confidence 999999999999999988877664 88999998 6 99999999999999999 677776
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
.+++|.+|+..|.++.|.|+|.-|++|++|++.++||++..+...+..++.. ..+|++|+||..|++|
T Consensus 221 c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~------------~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 221 CVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSI------------ICGITSVAFSKSGRLL 288 (343)
T ss_pred eeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcc------------cCCceeEEEcccccEE
Confidence 7889999999999999999999999999999999999998766655444432 2489999999999999
Q ss_pred EEE
Q 021036 314 AMV 316 (318)
Q Consensus 314 ~~~ 316 (318)
..|
T Consensus 289 fag 291 (343)
T KOG0286|consen 289 FAG 291 (343)
T ss_pred Eee
Confidence 886
No 17
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=1.4e-29 Score=209.39 Aligned_cols=278 Identities=17% Similarity=0.172 Sum_probs=206.1
Q ss_pred eccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-------------------
Q 021036 7 FTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------- 67 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------- 67 (318)
+++-.++++-+-+++|+|.|+++.+++-+-.+....+.. |... +.|+.++|++.
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~----HskF---V~~VRysPDG~~Fat~gsDgki~iyDGktg 222 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFRE----HSKF---VNCVRYSPDGSRFATAGSDGKIYIYDGKTG 222 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccc----cccc---eeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence 355677888888899999999999998765443222221 3333 55688888864
Q ss_pred -----CC---CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc----------------------------
Q 021036 68 -----LS---SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED---------------------------- 111 (318)
Q Consensus 68 -----~~---~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---------------------------- 111 (318)
+. +|.+.|+++.++||++.+++++.|.+++|||+.+.++.+...
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i 302 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI 302 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence 22 699999999999999999999999999999999876543210
Q ss_pred -cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee-ccccccc---------
Q 021036 112 -CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA-EAHCVPF--------- 180 (318)
Q Consensus 112 -~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~--------- 180 (318)
.-.+.+...++.+.+|...|+++.. ++++++|++|+.||.|.-|+..++..-... ..|...+
T Consensus 303 n~ln~~d~~~~~~i~GHnK~ITaLtv-------~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~ 375 (603)
T KOG0318|consen 303 NYLNPSDPSVLKVISGHNKSITALTV-------SPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG 375 (603)
T ss_pred EEecccCCChhheecccccceeEEEE-------cCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC
Confidence 0112334567788999999999999 899999999999999999999876433211 0000000
Q ss_pred -----------ccc------------------------------------ee----------eeeecccceeEEEEeecc
Q 021036 181 -----------SLL------------------------------------KE----------VVTVNTVPISVLSLILPV 203 (318)
Q Consensus 181 -----------~~~------------------------------------~~----------~~~~~~~~v~~l~~~~~~ 203 (318)
+.. .. ....-.....+++++
T Consensus 376 ~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~--- 452 (603)
T KOG0318|consen 376 ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVS--- 452 (603)
T ss_pred cEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEc---
Confidence 000 00 000112345677888
Q ss_pred CCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 204 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
|++..+++|+.|+.|++|.+ ..........+..|.++|++++|+||+.+||++...+.+.+||+.+++.....
T Consensus 453 --~~~~~vaVGG~Dgkvhvysl--~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~--- 525 (603)
T KOG0318|consen 453 --PDGSEVAVGGQDGKVHVYSL--SGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNR--- 525 (603)
T ss_pred --CCCCEEEEecccceEEEEEe--cCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecce---
Confidence 99999999999999999954 44443345556779999999999999999999999999999999987774321
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
..-|+++|.+|+|+|+.+++|+|.+
T Consensus 526 ----------w~FHtakI~~~aWsP~n~~vATGSl 550 (603)
T KOG0318|consen 526 ----------WAFHTAKINCVAWSPNNKLVATGSL 550 (603)
T ss_pred ----------eeeeeeeEEEEEeCCCceEEEeccc
Confidence 1227789999999999999999863
No 18
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.9e-31 Score=213.06 Aligned_cols=238 Identities=18% Similarity=0.210 Sum_probs=192.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------CCC-C
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------LSS-K 71 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~~~-~ 71 (318)
+...+++|++.|.+.+|+..+-...... +.|... +.++.|++++. +++ |
T Consensus 107 eGRRLltgs~SGEFtLWNg~~fnFEtil----QaHDs~---Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh 179 (464)
T KOG0284|consen 107 EGRRLLTGSQSGEFTLWNGTSFNFETIL----QAHDSP---VRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHH 179 (464)
T ss_pred CCceeEeecccccEEEecCceeeHHHHh----hhhccc---ceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhh
Confidence 3467899999999999988543221111 235554 44477777654 234 4
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
..+|++++|||....+++++.||+|+|||...++ ..+.+.+|.-.|.+++| .|.-.+++
T Consensus 180 ~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k--------------ee~vL~GHgwdVksvdW-------HP~kgLia 238 (464)
T KOG0284|consen 180 AEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK--------------EERVLRGHGWDVKSVDW-------HPTKGLIA 238 (464)
T ss_pred hhhhheeccCCCCceeEEecCCCeEEEEeccCCc--------------hhheeccCCCCcceecc-------CCccceeE
Confidence 5889999999999999999999999999998743 44567999999999999 67777999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+++.|..|++||.++++++.++..|.. .|..+.|+ +++++|++++.|..+++| |+++.+
T Consensus 239 sgskDnlVKlWDprSg~cl~tlh~HKn--------------tVl~~~f~-----~n~N~Llt~skD~~~kv~--DiR~mk 297 (464)
T KOG0284|consen 239 SGSKDNLVKLWDPRSGSCLATLHGHKN--------------TVLAVKFN-----PNGNWLLTGSKDQSCKVF--DIRTMK 297 (464)
T ss_pred EccCCceeEeecCCCcchhhhhhhccc--------------eEEEEEEc-----CCCCeeEEccCCceEEEE--ehhHhH
Confidence 999999999999999999998877665 89999999 999999999999999999 555444
Q ss_pred eeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
.+..+++|...|+++.|+|- ..+|.+|+.||.|..|.+...+...... ..|...|++++|+|=|
T Consensus 298 --El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-------------~AHd~~iwsl~~hPlG 362 (464)
T KOG0284|consen 298 --ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-------------PAHDGEIWSLAYHPLG 362 (464)
T ss_pred --HHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC-------------cccccceeeeeccccc
Confidence 77889999999999999995 5588999999999999987333222111 2366799999999999
Q ss_pred cEEEEEe
Q 021036 311 LVVAMVQ 317 (318)
Q Consensus 311 ~~l~~~~ 317 (318)
-+||+|.
T Consensus 363 hil~tgs 369 (464)
T KOG0284|consen 363 HILATGS 369 (464)
T ss_pred eeEeecC
Confidence 9999974
No 19
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.2e-28 Score=190.96 Aligned_cols=234 Identities=19% Similarity=0.274 Sum_probs=180.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+..-+++|+.|..|.+|++..... -.. .+.+|.++|..+.+.++++.|++++.|.+
T Consensus 58 ~gs~~aSgG~Dr~I~LWnv~gdce-N~~-----------------------~lkgHsgAVM~l~~~~d~s~i~S~gtDk~ 113 (338)
T KOG0265|consen 58 DGSCFASGGSDRAIVLWNVYGDCE-NFW-----------------------VLKGHSGAVMELHGMRDGSHILSCGTDKT 113 (338)
T ss_pred CCCeEeecCCcceEEEEecccccc-cee-----------------------eeccccceeEeeeeccCCCEEEEecCCce
Confidence 555679999999999998754321 111 11235555555555555599999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|+.||.++|+ .++.+++|..-|+++.- . .-+..++.+++.|+++++||+++...++++..
T Consensus 114 v~~wD~~tG~--------------~~rk~k~h~~~vNs~~p--~----rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~ 173 (338)
T KOG0265|consen 114 VRGWDAETGK--------------RIRKHKGHTSFVNSLDP--S----RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN 173 (338)
T ss_pred EEEEecccce--------------eeehhccccceeeecCc--c----ccCCeEEEecCCCceEEEEeecccchhhcccc
Confidence 9999999954 66889999999999874 2 33446788889999999999999888877753
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
.. +++++.|. .++..+.+|+-|+.|++| |++... ..+.+.||..+|+.+..+|+|.
T Consensus 174 ky---------------qltAv~f~-----d~s~qv~sggIdn~ikvW--d~r~~d--~~~~lsGh~DtIt~lsls~~gs 229 (338)
T KOG0265|consen 174 KY---------------QLTAVGFK-----DTSDQVISGGIDNDIKVW--DLRKND--GLYTLSGHADTITGLSLSRYGS 229 (338)
T ss_pred ce---------------eEEEEEec-----ccccceeeccccCceeee--ccccCc--ceEEeecccCceeeEEeccCCC
Confidence 33 78899998 889999999999999999 666665 6778999999999999999999
Q ss_pred EEEEecCCCcEEEEEecC----Cc-ee--------------eeecCCCCCCcc-ccc----------------cCCCcce
Q 021036 256 CLYSCSQDNFVRSWIFHG----NS-LS--------------QVSIPTNTPGLQ-SCT----------------DLPDAFV 299 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~----~~-~~--------------~~~~~~~~~~~~-~~~----------------~~~~h~~ 299 (318)
++.+-+.|.++++||++. .. +. ...+.++...+. ++. .+++|.+
T Consensus 230 ~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g 309 (338)
T KOG0265|consen 230 FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG 309 (338)
T ss_pred ccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce
Confidence 999999999999999974 11 11 112233332222 221 2569999
Q ss_pred eeeEEEEcCCCcEEEEEe
Q 021036 300 SCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 300 ~v~~v~~sp~~~~l~~~~ 317 (318)
.|+.++|+|...+|.+++
T Consensus 310 svn~~~Fhp~e~iils~~ 327 (338)
T KOG0265|consen 310 SVNEVDFHPTEPIILSCS 327 (338)
T ss_pred eEEEeeecCCCcEEEEec
Confidence 999999999999998875
No 20
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.8e-29 Score=215.15 Aligned_cols=231 Identities=21% Similarity=0.258 Sum_probs=184.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
-.++|+|.|+++++|.++.+.+.........+|...+. +++.+..+ ..+|++++.|++++
T Consensus 378 ~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svg---ava~~~~~-----------------asffvsvS~D~tlK 437 (775)
T KOG0319|consen 378 DLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVG---AVAGSKLG-----------------ASFFVSVSQDCTLK 437 (775)
T ss_pred cEEEEecCCceEEEEEecCCcchhhhhhhhcccccccc---eeeecccC-----------------ccEEEEecCCceEE
Confidence 46899999999999999665544433333334444422 24444333 47999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|++...+. ..++...........|...|+|+++ +|+..+++|||.|++.+||++.+.....++.+|.
T Consensus 438 ~W~l~~s~~-----~~~~~~~~~~~t~~aHdKdIN~Vai-------a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~ 505 (775)
T KOG0319|consen 438 LWDLPKSKE-----TAFPIVLTCRYTERAHDKDINCVAI-------APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHT 505 (775)
T ss_pred EecCCCccc-----ccccceehhhHHHHhhcccccceEe-------cCCCceEEecccccceeeecccCceEEEEeeCCc
Confidence 999976221 0011111111234579999999999 8999999999999999999999888888887666
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
. .|.++.|+ |..++++++|.|.+|++| .+.+.. ++.++.||+..|..+.|-.+|+.|
T Consensus 506 R--------------Gvw~V~Fs-----~~dq~laT~SgD~TvKIW--~is~fS--ClkT~eGH~~aVlra~F~~~~~ql 562 (775)
T KOG0319|consen 506 R--------------GVWCVSFS-----KNDQLLATCSGDKTVKIW--SISTFS--CLKTFEGHTSAVLRASFIRNGKQL 562 (775)
T ss_pred c--------------ceEEEEec-----cccceeEeccCCceEEEE--Eeccce--eeeeecCccceeEeeeeeeCCcEE
Confidence 4 89999999 999999999999999999 555655 889999999999999999999999
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++++.||-|++|+++++.+.. ++..|.++|++++-+|...+++||.
T Consensus 563 iS~~adGliKlWnikt~eC~~--------------tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 563 ISAGADGLIKLWNIKTNECEM--------------TLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred EeccCCCcEEEEeccchhhhh--------------hhhhccceeEEEeecCccceeEecC
Confidence 999999999999999977663 5667888999999999999998774
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=2.5e-30 Score=207.69 Aligned_cols=190 Identities=18% Similarity=0.276 Sum_probs=163.1
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~ 146 (318)
++.|..+|.++.+++++.++++|+.+|.|++|+.+- ..++.+++|. ..|++++| +++
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnm---------------nnVk~~~ahh~eaIRdlaf-------Spn 191 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNM---------------NNVKIIQAHHAEAIRDLAF-------SPN 191 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccch---------------hhhHHhhHhhhhhhheecc-------CCC
Confidence 668999999999999999999999999999999874 3445566655 89999999 888
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
...|++++.||+|+|||....+....+.+| ...|.++.|+ |...++++|+.|..|++| |
T Consensus 192 DskF~t~SdDg~ikiWdf~~~kee~vL~GH--------------gwdVksvdWH-----P~kgLiasgskDnlVKlW--D 250 (464)
T KOG0284|consen 192 DSKFLTCSDDGTIKIWDFRMPKEERVLRGH--------------GWDVKSVDWH-----PTKGLIASGSKDNLVKLW--D 250 (464)
T ss_pred CceeEEecCCCeEEEEeccCCchhheeccC--------------CCCcceeccC-----CccceeEEccCCceeEee--c
Confidence 889999999999999999987766666544 4489999999 999999999999999999 8
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
.+++. ++.++.+|...|..+.|+|++.+|+++|.|..++++|+++-+... .+++|...|++++|
T Consensus 251 prSg~--cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~--------------~~r~Hkkdv~~~~W 314 (464)
T KOG0284|consen 251 PRSGS--CLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF--------------TYRGHKKDVTSLTW 314 (464)
T ss_pred CCCcc--hhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH--------------Hhhcchhhheeecc
Confidence 88887 788999999999999999999999999999999999999533221 34456778999999
Q ss_pred cC-CCcEEEEE
Q 021036 307 SP-GNLVVAMV 316 (318)
Q Consensus 307 sp-~~~~l~~~ 316 (318)
+| ...++.+|
T Consensus 315 hP~~~~lftsg 325 (464)
T KOG0284|consen 315 HPLNESLFTSG 325 (464)
T ss_pred ccccccceeec
Confidence 99 44555554
No 22
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.5e-28 Score=186.31 Aligned_cols=228 Identities=21% Similarity=0.239 Sum_probs=171.9
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+...+.+++++.||++++||+..... +....+. |+..+.. +.|++.. +..+++++
T Consensus 68 Wse~~e~~~~~a~GDGSLrl~d~~~~s~-Pi~~~kE--H~~EV~S---vdwn~~~-----------------r~~~ltsS 124 (311)
T KOG0277|consen 68 WSENHENQVIAASGDGSLRLFDLTMPSK-PIHKFKE--HKREVYS---VDWNTVR-----------------RRIFLTSS 124 (311)
T ss_pred ecCCCcceEEEEecCceEEEeccCCCCc-chhHHHh--hhhheEE---ecccccc-----------------ceeEEeec
Confidence 4567788899999999999999543221 2221111 4444333 7777766 57788889
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
-||+|++|+...+ +.++++.+|...|....|+ +..+++++++|.|+++++||++......
T Consensus 125 WD~TiKLW~~~r~--------------~Sv~Tf~gh~~~Iy~a~~s------p~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 125 WDGTIKLWDPNRP--------------NSVQTFNGHNSCIYQAAFS------PHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred cCCceEeecCCCC--------------cceEeecCCccEEEEEecC------CCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999999999874 4678899999999999994 3455689999999999999998643333
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+.. |...+.++.|+. -+..++++|+.|+.|+.|| ++.-+ .++.++.+|.-.|..++||
T Consensus 185 ~i~a--------------h~~Eil~cdw~k----y~~~vl~Tg~vd~~vr~wD--ir~~r-~pl~eL~gh~~AVRkvk~S 243 (311)
T KOG0277|consen 185 SIEA--------------HNSEILCCDWSK----YNHNVLATGGVDNLVRGWD--IRNLR-TPLFELNGHGLAVRKVKFS 243 (311)
T ss_pred EEEe--------------ccceeEeecccc----cCCcEEEecCCCceEEEEe--hhhcc-ccceeecCCceEEEEEecC
Confidence 3544 444788888882 5678999999999999994 55544 3788899999999999999
Q ss_pred CCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 252 FDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 252 ~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
|.. ..|++++.|-+++|||...+.-... ...-|+.-+.++.|++ ++.++|++
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e-------------~~~~HtEFv~g~Dws~~~~~~vAs~ 297 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIE-------------TVDHHTEFVCGLDWSLFDPGQVAST 297 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhh-------------hhhccceEEeccccccccCceeeec
Confidence 974 5899999999999999864322111 1112666889999998 66677764
No 23
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1e-28 Score=195.59 Aligned_cols=194 Identities=18% Similarity=0.246 Sum_probs=168.9
Q ss_pred cccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC
Q 021036 65 VLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 65 ~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 144 (318)
...+.+|.+=|.|+++.|..++|++|+.|++|+|||+.++ ++..++.+|-..|..+++ +
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg--------------~LkltltGhi~~vr~vav-------S 202 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG--------------QLKLTLTGHIETVRGVAV-------S 202 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC--------------eEEEeecchhheeeeeee-------c
Confidence 3447789999999999999999999999999999999994 577789999999999999 7
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+...||++++.|+.|+.||++..+.+....+|-. .|++++.. |.-+.|++|+.|.++++|
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS--------------~V~~L~lh-----PTldvl~t~grDst~RvW- 262 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS--------------GVYCLDLH-----PTLDVLVTGGRDSTIRVW- 262 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHHHhccccc--------------eeEEEecc-----ccceeEEecCCcceEEEe-
Confidence 7778999999999999999999888877766554 89999999 999999999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
|+++.. .+..+.+|..+|..+.+.|....+++|+.|++|++||++.++-... +..|...|+++
T Consensus 263 -DiRtr~--~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~t--------------lt~hkksvral 325 (460)
T KOG0285|consen 263 -DIRTRA--SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMIT--------------LTHHKKSVRAL 325 (460)
T ss_pred -eecccc--eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEe--------------eecccceeeEE
Confidence 566655 7889999999999999999888899999999999999998765432 22244578888
Q ss_pred EEcCCCcEEEEE
Q 021036 305 AVSPGNLVVAMV 316 (318)
Q Consensus 305 ~~sp~~~~l~~~ 316 (318)
+.+|....+|++
T Consensus 326 ~lhP~e~~fASa 337 (460)
T KOG0285|consen 326 CLHPKENLFASA 337 (460)
T ss_pred ecCCchhhhhcc
Confidence 888888777765
No 24
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.7e-27 Score=209.00 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=172.4
Q ss_pred eEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 20 TVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+++++.|+.+++|+....+. +.. +.+|...|.+++|+++++++++++.|++|+
T Consensus 174 l~~~~~~~~i~~~~~~~~~~~~~~~-------------------------l~~h~~~v~~~~fs~d~~~l~s~s~D~tir 228 (456)
T KOG0266|consen 174 LAAASSDGLIRIWKLEGIKSNLLRE-------------------------LSGHTRGVSDVAFSPDGSYLLSGSDDKTLR 228 (456)
T ss_pred EEEccCCCcEEEeecccccchhhcc-------------------------ccccccceeeeEECCCCcEEEEecCCceEE
Confidence 88899999999999966553 111 123444444444455559999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
|||+..+ ...++.+++|...|++++| ++.++++++|+.|++|++||++++++...+..|.
T Consensus 229 iwd~~~~-------------~~~~~~l~gH~~~v~~~~f-------~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs 288 (456)
T KOG0266|consen 229 IWDLKDD-------------GRNLKTLKGHSTYVTSVAF-------SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHS 288 (456)
T ss_pred EeeccCC-------------CeEEEEecCCCCceEEEEe-------cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccC
Confidence 9999442 3577899999999999999 8889999999999999999999999988887666
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc--eeEEEEcCCCC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV--VTGLAWAFDGC 255 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~ 255 (318)
. +|++++|+ +++.+|++++.|+.|++| |..++....+..+.++... ++.+.|+|++.
T Consensus 289 ~--------------~is~~~f~-----~d~~~l~s~s~d~~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~ 347 (456)
T KOG0266|consen 289 D--------------GISGLAFS-----PDGNLLVSASYDGTIRVW--DLETGSKLCLKLLSGAENSAPVTSVQFSPNGK 347 (456)
T ss_pred C--------------ceEEEEEC-----CCCCEEEEcCCCccEEEE--ECCCCceeeeecccCCCCCCceeEEEECCCCc
Confidence 4 89999999 999999999999999999 5556552224455555544 99999999999
Q ss_pred EEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++..|+.+++||+..+... ....+.... ..+.+...++.++++.+|.
T Consensus 348 ~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~i~sg~ 398 (456)
T KOG0266|consen 348 YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLV------------RCIFSPTLSTGGKLIYSGS 398 (456)
T ss_pred EEEEecCCCeEEEEEccCCcceeeecccCCcc------------eeEecccccCCCCeEEEEe
Confidence 9999999999999999975543 333333310 2455666677888888764
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=8.3e-28 Score=191.65 Aligned_cols=257 Identities=16% Similarity=0.174 Sum_probs=188.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhcccccc-----------------ccceeeeeccccc-------CCCCc
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAM-----------------LHSLAVAWSPVLR-------LSSKK 72 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~w~p~~~-------~~~~~ 72 (318)
...+++|+.||++|+||... ++...+..+.-+.+... ......+|++... -++|.
T Consensus 115 ~~~IltgsYDg~~riWd~~G-k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk 193 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKG-KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHK 193 (423)
T ss_pred CceEEEeecCCeeEEEecCC-ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccc
Confidence 34589999999999999864 33333332211111000 0111345555432 33899
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc-----------cccCCceeEEeeeccccccEEEEEeeeecC
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED-----------CKVPTTAVLIGLFQAHNSWITSISLAVLSS 141 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~ 141 (318)
.+|-++.+.+++..+++|+.|..|+||+.+....-..+. -.......++..+.+|..+|.++.|
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w----- 268 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW----- 268 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE-----
Confidence 999999999999999999999999999944322111111 0112234567788999999999999
Q ss_pred CCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 142 DSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 142 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
++ ...+++++.|.+|+.||+.++.....+.... .+.++.++ |..++|++|+.|..|+
T Consensus 269 --~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---------------sl~~i~~~-----~~~~Ll~~gssdr~ir 325 (423)
T KOG0313|consen 269 --SD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---------------SLNCISYS-----PLSKLLASGSSDRHIR 325 (423)
T ss_pred --cC-CCceEeecccceEEEEEeecccceeeeecCc---------------ceeEeecc-----cccceeeecCCCCcee
Confidence 44 5579999999999999999998887766544 78899999 8999999999999999
Q ss_pred EeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 222 LWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
+||-....+.. ...++.+|.+.|.++.|+|... .|++++.|+++++||+++..... .++.+|...
T Consensus 326 l~DPR~~~gs~-v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~pl-------------ydI~~h~DK 391 (423)
T KOG0313|consen 326 LWDPRTGDGSV-VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPL-------------YDIAGHNDK 391 (423)
T ss_pred ecCCCCCCCce-eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcc-------------eeeccCCce
Confidence 99544444443 5667889999999999999765 68899999999999999754221 134456679
Q ss_pred eeEEEEcCCCcEEEEEe
Q 021036 301 CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~~ 317 (318)
|.++.|+. +.+|++|.
T Consensus 392 vl~vdW~~-~~~IvSGG 407 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGG 407 (423)
T ss_pred EEEEeccC-CceEEecc
Confidence 99999985 45777764
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.7e-28 Score=204.94 Aligned_cols=191 Identities=16% Similarity=0.203 Sum_probs=165.5
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
+++||.|..||++++++++.+..+.+ |.+- +.+++-+|.. .+++++++|-.|++|
T Consensus 70 iv~GsDD~~IrVfnynt~ekV~~FeA----H~Dy---IR~iavHPt~------------------P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 70 IVTGSDDMQIRVFNYNTGEKVKTFEA----HSDY---IRSIAVHPTL------------------PYVLTSSDDMTIKLW 124 (794)
T ss_pred EEEecCCceEEEEecccceeeEEeec----cccc---eeeeeecCCC------------------CeEEecCCccEEEEe
Confidence 69999999999999999998888776 5554 4557777777 999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP 179 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 179 (318)
|.+.. ....+++.+|...|.+++| ++.+.+.|++++-|++|++|.+.+..+..++.+|+.
T Consensus 125 ~we~~-------------wa~~qtfeGH~HyVMqv~f------nPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek- 184 (794)
T KOG0276|consen 125 DWENE-------------WACEQTFEGHEHYVMQVAF------NPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK- 184 (794)
T ss_pred eccCc-------------eeeeeEEcCcceEEEEEEe------cCCCccceeeeeccccEEEEEcCCCCCceeeecccc-
Confidence 99864 4577899999999999999 345567899999999999999999888888877765
Q ss_pred cccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.|+++.+- +. ..+|++|+.|.+|++| |.++.. +++++.||...|..+.|+|.-..+
T Consensus 185 -------------GVN~Vdyy-----~~gdkpylIsgaDD~tiKvW--DyQtk~--CV~TLeGHt~Nvs~v~fhp~lpii 242 (794)
T KOG0276|consen 185 -------------GVNCVDYY-----TGGDKPYLISGADDLTIKVW--DYQTKS--CVQTLEGHTNNVSFVFFHPELPII 242 (794)
T ss_pred -------------CcceEEec-----cCCCcceEEecCCCceEEEe--ecchHH--HHHHhhcccccceEEEecCCCcEE
Confidence 89999997 43 3599999999999999 556666 789999999999999999999999
Q ss_pred EEecCCCcEEEEEecCCcee
Q 021036 258 YSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~ 277 (318)
++|++||+|+||...+..+.
T Consensus 243 isgsEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 243 ISGSEDGTVRIWNSKTYKLE 262 (794)
T ss_pred EEecCCccEEEecCcceehh
Confidence 99999999999998775443
No 27
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=1.5e-29 Score=199.81 Aligned_cols=187 Identities=16% Similarity=0.301 Sum_probs=148.1
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|..+|..+.|+. .++++++.|.++.+||+..+.. ....+.+.+|.+.|+.+.| +.
T Consensus 273 lihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~-----------it~rrVLvGHrAaVNvVdf---------d~ 330 (499)
T KOG0281|consen 273 LIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD-----------ITLRRVLVGHRAAVNVVDF---------DD 330 (499)
T ss_pred HhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH-----------HHHHHHHhhhhhheeeecc---------cc
Confidence 334555666666654 7999999999999999987542 2344567899999999999 45
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+++++++.|.+|++|++.+++.+.++.+|.. .|-|+.+. ++++++|+.|.+|++| |.
T Consensus 331 kyIVsASgDRTikvW~~st~efvRtl~gHkR--------------GIAClQYr-------~rlvVSGSSDntIRlw--di 387 (499)
T KOG0281|consen 331 KYIVSASGDRTIKVWSTSTCEFVRTLNGHKR--------------GIACLQYR-------DRLVVSGSSDNTIRLW--DI 387 (499)
T ss_pred ceEEEecCCceEEEEeccceeeehhhhcccc--------------cceehhcc-------CeEEEecCCCceEEEE--ec
Confidence 6999999999999999999999998887664 77777774 8999999999999999 67
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
..+. ++..++||+.-|.++.|+ .+.+++|+.||+|++||+..+.........- +-..+..|++.|..+.|.
T Consensus 388 ~~G~--cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~-----Cl~~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 388 ECGA--CLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTL-----CLRTLVEHSGRVFRLQFD 458 (499)
T ss_pred cccH--HHHHHhchHHhhhheeec--CceeeeccccceEEEEecccccCCcccccch-----HHHhhhhccceeEEEeec
Confidence 7777 778899999999999997 5679999999999999998754432111110 223445688889988886
Q ss_pred C
Q 021036 308 P 308 (318)
Q Consensus 308 p 308 (318)
.
T Consensus 459 ~ 459 (499)
T KOG0281|consen 459 E 459 (499)
T ss_pred c
Confidence 3
No 28
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-28 Score=204.25 Aligned_cols=230 Identities=15% Similarity=0.203 Sum_probs=190.0
Q ss_pred eeccCcCCCCCccc----eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCC
Q 021036 6 DFTSNKMKDSNTHP----TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSS 81 (318)
Q Consensus 6 ~~~~~~~~~~~~~~----~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s 81 (318)
...+.+.+-.+-|| ++++-..|.+.||+.++...+..+.....+ |.++.|-
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~P-------------------------vRa~kfi 64 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVP-------------------------VRAAKFI 64 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccc-------------------------hhhheee
Confidence 33566677777777 588889999999999999888777654433 3333333
Q ss_pred CCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
...+++++|++|..|++|+.++ .+.+..|.+|.+.|.+++. +|...+++|+|.|-+|++
T Consensus 65 aRknWiv~GsDD~~IrVfnynt--------------~ekV~~FeAH~DyIR~iav-------HPt~P~vLtsSDDm~iKl 123 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNT--------------GEKVKTFEAHSDYIRSIAV-------HPTLPYVLTSSDDMTIKL 123 (794)
T ss_pred eccceEEEecCCceEEEEeccc--------------ceeeEEeeccccceeeeee-------cCCCCeEEecCCccEEEE
Confidence 3359999999999999999999 4578899999999999999 677779999999999999
Q ss_pred EECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
||.+.+ .+.+++.+|+ +-|.+++|+ |.|.+.|++++-|++|++|. +.+.. +..++++
T Consensus 124 W~we~~wa~~qtfeGH~--------------HyVMqv~fn----PkD~ntFaS~sLDrTVKVWs--lgs~~--~nfTl~g 181 (794)
T KOG0276|consen 124 WDWENEWACEQTFEGHE--------------HYVMQVAFN----PKDPNTFASASLDRTVKVWS--LGSPH--PNFTLEG 181 (794)
T ss_pred eeccCceeeeeEEcCcc--------------eEEEEEEec----CCCccceeeeeccccEEEEE--cCCCC--Cceeeec
Confidence 999876 4556666554 489999999 57889999999999999995 44443 6778999
Q ss_pred ccCceeEEEEcCCC--CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDG--CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|...|.++.|-+.| .+|++|+.|.+|+|||.++..+.+ ++.||...|..+.|+|.-.++++|.
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~--------------TLeGHt~Nvs~v~fhp~lpiiisgs 246 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQ--------------TLEGHTNNVSFVFFHPELPIIISGS 246 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHH--------------HhhcccccceEEEecCCCcEEEEec
Confidence 99999999998855 599999999999999999877664 5667778999999999999999884
No 29
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=8.9e-28 Score=209.86 Aligned_cols=249 Identities=16% Similarity=0.192 Sum_probs=197.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------CCCCcccc
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------LSSKKYPV 75 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------~~~~~~~v 75 (318)
++++-.+|.|++||+.-+.++..+.. |.+. +..+.|+|... +.+|.--|
T Consensus 24 ILtslHsG~IQlWDYRM~tli~rFde----HdGp---VRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYV 96 (1202)
T KOG0292|consen 24 ILTSLHSGVIQLWDYRMGTLIDRFDE----HDGP---VRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYV 96 (1202)
T ss_pred EEEeecCceeeeehhhhhhHHhhhhc----cCCc---cceeeecCCCCeEEecCCccEEEEEecccceehhhhcccccee
Confidence 68888999999999999988887766 3333 22255555432 56788889
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
..+.|.+...+++++++|.+|+||+..+. +.+..+.+|...|.|..| .|..++++++|-
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNwqsr--------------~~iavltGHnHYVMcAqF-------hptEDlIVSaSL 155 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNWQSR--------------KCIAVLTGHNHYVMCAQF-------HPTEDLIVSASL 155 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEeccCC--------------ceEEEEecCceEEEeecc-------CCccceEEEecc
Confidence 99999999999999999999999999984 467889999999999999 788889999999
Q ss_pred CCcEEEEECCCcceeeeec--------cccc-------ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcE
Q 021036 156 DGSVRIWDGYIQELQKSAE--------AHCV-------PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i 220 (318)
|.+|++||+..-+....-. +... .-.+++.+..+|+..|+-++|+ |.-.+|++|+.|..|
T Consensus 156 DQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh-----pTlpliVSG~DDRqV 230 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH-----PTLPLIVSGADDRQV 230 (1202)
T ss_pred cceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec-----CCcceEEecCCccee
Confidence 9999999987533222111 1111 1123457889999999999999 999999999999999
Q ss_pred EEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 221 DLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 221 ~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
++|.++.. ..| .+.+..+|.+.|+++-|+|....+++.|+|++|++||+..+...+..-..+ ++
T Consensus 231 KlWrmnet-KaW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrren--------------dR 294 (1202)
T KOG0292|consen 231 KLWRMNET-KAW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRREN--------------DR 294 (1202)
T ss_pred eEEEeccc-cce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccC--------------Ce
Confidence 99955432 233 677888999999999999999999999999999999998766543222221 36
Q ss_pred eeEEEEcCCCcEEEEEe
Q 021036 301 CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~~ 317 (318)
.+.++-+|...++|.||
T Consensus 295 FW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 295 FWILAAHPELNLFAAGH 311 (1202)
T ss_pred EEEEEecCCcceeeeec
Confidence 78888888888888887
No 30
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.9e-27 Score=208.59 Aligned_cols=192 Identities=23% Similarity=0.338 Sum_probs=164.5
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
+...|.++.|+++|+.+++++.|+.+++|+....+. ...+.+.+|...|++++| +++++++
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~------------~~~~~l~~h~~~v~~~~f-------s~d~~~l 218 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS------------NLLRELSGHTRGVSDVAF-------SPDGSYL 218 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc------------hhhccccccccceeeeEE-------CCCCcEE
Confidence 367899999999999999999999999999965431 145566899999999999 9999999
Q ss_pred EEEeCCCcEEEEEC-CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 151 VTGSSDGSVRIWDG-YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 151 ~s~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++++.|+++++||+ ..+..++++.+|.. .|++++|+ |+++++++|+.|++|++| +.++
T Consensus 219 ~s~s~D~tiriwd~~~~~~~~~~l~gH~~--------------~v~~~~f~-----p~g~~i~Sgs~D~tvriW--d~~~ 277 (456)
T KOG0266|consen 219 LSGSDDKTLRIWDLKDDGRNLKTLKGHST--------------YVTSVAFS-----PDGNLLVSGSDDGTVRIW--DVRT 277 (456)
T ss_pred EEecCCceEEEeeccCCCeEEEEecCCCC--------------ceEEEEec-----CCCCEEEEecCCCcEEEE--eccC
Confidence 99999999999999 45577788876665 89999999 999999999999999999 6666
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
++ ++..+.+|.+.|++++|++++++|++++.|+.|++||+.++... .+..... .. +++.+.|
T Consensus 278 ~~--~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~------------~~-~~~~~~f 342 (456)
T KOG0266|consen 278 GE--CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAEN------------SA-PVTSVQF 342 (456)
T ss_pred Ce--EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCC------------CC-ceeEEEE
Confidence 66 78889999999999999999999999999999999999998743 2222221 11 6899999
Q ss_pred cCCCcEEEEEe
Q 021036 307 SPGNLVVAMVQ 317 (318)
Q Consensus 307 sp~~~~l~~~~ 317 (318)
+|++++++++.
T Consensus 343 sp~~~~ll~~~ 353 (456)
T KOG0266|consen 343 SPNGKYLLSAS 353 (456)
T ss_pred CCCCcEEEEec
Confidence 99999999873
No 31
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=1e-26 Score=177.88 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=151.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
|.+||+|+.|..||||+...+.. ......+ .+|...|++++| +|.|++|+++|.|.++.||
T Consensus 27 g~ilAscg~Dk~vriw~~~~~~s-----------~~ck~vld~~hkrsVRsvAw-------sp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 27 GVILASCGTDKAVRIWSTSSGDS-----------WTCKTVLDDGHKRSVRSVAW-------SPHGRYLASASFDATVVIW 88 (312)
T ss_pred ceEEEeecCCceEEEEecCCCCc-----------EEEEEeccccchheeeeeee-------cCCCcEEEEeeccceEEEe
Confidence 48999999999999999985432 1222223 479999999999 9999999999999999999
Q ss_pred ECCCc--ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQ--ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
.-..+ +++.++.+|+. .|.+++|+ ++|++||+++.|..|-+|..+ +..+++.+..++.
T Consensus 89 ~k~~~efecv~~lEGHEn--------------EVK~Vaws-----~sG~~LATCSRDKSVWiWe~d-eddEfec~aVL~~ 148 (312)
T KOG0645|consen 89 KKEDGEFECVATLEGHEN--------------EVKCVAWS-----ASGNYLATCSRDKSVWIWEID-EDDEFECIAVLQE 148 (312)
T ss_pred ecCCCceeEEeeeecccc--------------ceeEEEEc-----CCCCEEEEeeCCCeEEEEEec-CCCcEEEEeeecc
Confidence 86644 45555665554 89999999 999999999999999999876 5677889999999
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEec-CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH-GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+.|-.+.|+|...+|++++.|.+|++|.-. .+..... ..+.+|...|.+++|+|.|..|+++.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~------------~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECV------------QTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEE------------EEecCccceEEEEEecCCCceEEEec
Confidence 99999999999999999999999999999876 3322211 23445667899999999998887763
No 32
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.8e-28 Score=182.12 Aligned_cols=239 Identities=20% Similarity=0.213 Sum_probs=171.2
Q ss_pred CCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC--CccEEEEe
Q 021036 13 KDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN--WFSILAVG 90 (318)
Q Consensus 13 ~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~--~~~~l~~g 90 (318)
-+.....++|+|.|++|+|+.+..+.....+. .|.+|.+||..+++.. .|.+||++
T Consensus 19 lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~----------------------~L~Gh~GPVwqv~wahPk~G~iLASc 76 (299)
T KOG1332|consen 19 LDYYGKRLATCSSDGTVKIFEVRNNGQSKLLA----------------------ELTGHSGPVWKVAWAHPKFGTILASC 76 (299)
T ss_pred hhhhcceeeeecCCccEEEEEEcCCCCceeee----------------------EecCCCCCeeEEeecccccCcEeeEe
Confidence 34556789999999999999998765422211 2333444444444433 37999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.||.|.||.-++++ .........|...|++++|.|+ .-|-.|++++.||.|.+.+.+....-
T Consensus 77 sYDgkVIiWke~~g~------------w~k~~e~~~h~~SVNsV~waph-----eygl~LacasSDG~vsvl~~~~~g~w 139 (299)
T KOG1332|consen 77 SYDGKVIIWKEENGR------------WTKAYEHAAHSASVNSVAWAPH-----EYGLLLACASSDGKVSVLTYDSSGGW 139 (299)
T ss_pred ecCceEEEEecCCCc------------hhhhhhhhhhcccceeeccccc-----ccceEEEEeeCCCcEEEEEEcCCCCc
Confidence 999999999999875 3455667889999999999553 34568999999999999998754110
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCC-------C--CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS-------P--RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-------~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
.. ......|...|++++|.+..-| + .-+.|++|+.|..|+||+. ...+++.-.++.+|
T Consensus 140 ~t-----------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~--~~~~w~~e~~l~~H 206 (299)
T KOG1332|consen 140 TT-----------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKF--DSDSWKLERTLEGH 206 (299)
T ss_pred cc-----------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeec--CCcchhhhhhhhhc
Confidence 00 0122456668999999832111 0 0157999999999999954 45566666679999
Q ss_pred cCceeEEEEcCCC----CEEEEecCCCcEEEEEecCC-ceeee-ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 242 DQVVTGLAWAFDG----CCLYSCSQDNFVRSWIFHGN-SLSQV-SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 242 ~~~v~~~~~~~~~----~~l~s~~~d~~v~iwd~~~~-~~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.|..++|.|.- .+||++++||+|.||..+.. ...+. ..++. ...++.++||+.|.+|++
T Consensus 207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f-------------~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEF-------------PDVVWRVSWSLSGNILAV 273 (299)
T ss_pred chhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccC-------------CcceEEEEEeccccEEEE
Confidence 9999999999962 48999999999999987632 11111 11221 147899999999999987
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
+
T Consensus 274 s 274 (299)
T KOG1332|consen 274 S 274 (299)
T ss_pred e
Confidence 5
No 33
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-27 Score=189.64 Aligned_cols=215 Identities=19% Similarity=0.251 Sum_probs=177.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+++||.|++++|||+.+++....+. +|...|..+++|+...|+++++.|+.|+
T Consensus 164 ~wf~tgs~DrtikIwDlatg~Lkltlt-------------------------Ghi~~vr~vavS~rHpYlFs~gedk~VK 218 (460)
T KOG0285|consen 164 EWFATGSADRTIKIWDLATGQLKLTLT-------------------------GHIETVRGVAVSKRHPYLFSAGEDKQVK 218 (460)
T ss_pred eeEEecCCCceeEEEEcccCeEEEeec-------------------------chhheeeeeeecccCceEEEecCCCeeE
Confidence 346999999999999999998644433 2333344444444449999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
-||++.. +.++.+.+|-..|.|++. .|.-+.|++|+.|.++++||+++...+..+.+|.
T Consensus 219 CwDLe~n--------------kvIR~YhGHlS~V~~L~l-------hPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~ 277 (460)
T KOG0285|consen 219 CWDLEYN--------------KVIRHYHGHLSGVYCLDL-------HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHT 277 (460)
T ss_pred EEechhh--------------hhHHHhccccceeEEEec-------cccceeEEecCCcceEEEeeecccceEEEecCCC
Confidence 9999984 467889999999999999 7778899999999999999999998888887766
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
. +|..+.+. |....+++|+.|++|++| |.+.++ -..++..|...|.+++.+|....+
T Consensus 278 ~--------------~V~~V~~~-----~~dpqvit~S~D~tvrlW--Dl~agk--t~~tlt~hkksvral~lhP~e~~f 334 (460)
T KOG0285|consen 278 N--------------PVASVMCQ-----PTDPQVITGSHDSTVRLW--DLRAGK--TMITLTHHKKSVRALCLHPKENLF 334 (460)
T ss_pred C--------------cceeEEee-----cCCCceEEecCCceEEEe--eeccCc--eeEeeecccceeeEEecCCchhhh
Confidence 5 88888888 778889999999999999 666776 566788899999999999999899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+++.| .|+-|++..+.... .+.+|.+-+++++.+.|+-++.-+
T Consensus 335 ASas~d-nik~w~~p~g~f~~--------------nlsgh~~iintl~~nsD~v~~~G~ 378 (460)
T KOG0285|consen 335 ASASPD-NIKQWKLPEGEFLQ--------------NLSGHNAIINTLSVNSDGVLVSGG 378 (460)
T ss_pred hccCCc-cceeccCCccchhh--------------ccccccceeeeeeeccCceEEEcC
Confidence 999877 58899987766553 355677889999999988666543
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=4.1e-27 Score=179.73 Aligned_cols=221 Identities=15% Similarity=0.163 Sum_probs=173.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+++|..|++.+.++.+|.+|++++.|.+..+|-..+| +.+.++.+|.+.|+|+.. ..+.
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--------------erlGty~GHtGavW~~Di-------d~~s 64 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--------------ERLGTYDGHTGAVWCCDI-------DWDS 64 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCC--------------ceeeeecCCCceEEEEEe-------cCCc
Confidence 7789999999999999999999999999999988774 467899999999999999 8889
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccc----cccc-----------------------------------eeeee
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP----FSLL-----------------------------------KEVVT 188 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~-----------------------------------~~~~~ 188 (318)
++++||+.|.++++||+.+|+++..++..... |... .....
T Consensus 65 ~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~ 144 (327)
T KOG0643|consen 65 KHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP 144 (327)
T ss_pred ceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEec
Confidence 99999999999999999999988765432211 1000 01223
Q ss_pred ecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEE
Q 021036 189 VNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268 (318)
Q Consensus 189 ~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 268 (318)
.+...++..-|. |-++.|++|..||.|..| |.+++. +.+..-+.|...|+.++++|+..++++++.|.+-++
T Consensus 145 t~~skit~a~Wg-----~l~~~ii~Ghe~G~is~~--da~~g~-~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 145 TPDSKITSALWG-----PLGETIIAGHEDGSISIY--DARTGK-ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred CCccceeeeeec-----ccCCEEEEecCCCcEEEE--EcccCc-eeeechhhhccccccccccCCcceEEecccCcccee
Confidence 345677888888 999999999999999999 677764 256666779999999999999999999999999999
Q ss_pred EEecCCceeeee----------cCCCCCCcc--cc-----------------------------ccCCCcceeeeEEEEc
Q 021036 269 WIFHGNSLSQVS----------IPTNTPGLQ--SC-----------------------------TDLPDAFVSCLGMAVS 307 (318)
Q Consensus 269 wd~~~~~~~~~~----------~~~~~~~~~--~~-----------------------------~~~~~h~~~v~~v~~s 307 (318)
||..+-.+.... ..|....+. |. ....+|.++|++|+|+
T Consensus 217 ~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh 296 (327)
T KOG0643|consen 217 VDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH 296 (327)
T ss_pred eeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC
Confidence 999874432211 112111111 11 1123999999999999
Q ss_pred CCCcEEEEEe
Q 021036 308 PGNLVVAMVQ 317 (318)
Q Consensus 308 p~~~~l~~~~ 317 (318)
|||+..++|.
T Consensus 297 PdGksYsSGG 306 (327)
T KOG0643|consen 297 PDGKSYSSGG 306 (327)
T ss_pred CCCcccccCC
Confidence 9999888763
No 35
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.95 E-value=3.2e-26 Score=173.24 Aligned_cols=197 Identities=19% Similarity=0.258 Sum_probs=153.3
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
-++|||+||+++|||+....+...+. +... +.++..+|.. .-|++|..+|.|++
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~~-----~~sp---Vn~vvlhpnQ------------------teLis~dqsg~irv 150 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNYQ-----HNSP---VNTVVLHPNQ------------------TELISGDQSGNIRV 150 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhcc-----CCCC---cceEEecCCc------------------ceEEeecCCCcEEE
Confidence 36999999999999999855433332 2222 3335555555 89999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
||+.+..+.. ..+.....+|.++.. .++|..++.+...|+..+|++.+.+....+..-
T Consensus 151 WDl~~~~c~~-------------~liPe~~~~i~sl~v-------~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~-- 208 (311)
T KOG0315|consen 151 WDLGENSCTH-------------ELIPEDDTSIQSLTV-------MPDGSMLAAANNKGNCYVWRLLNHQTASELEPV-- 208 (311)
T ss_pred EEccCCcccc-------------ccCCCCCcceeeEEE-------cCCCcEEEEecCCccEEEEEccCCCccccceEh--
Confidence 9999865421 123344578999999 899999999999999999999875433332211
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.....|..-+..+.++ |++++|++++.|.+++||+ ..+. ++....+++|...++..+||.||+||+
T Consensus 209 ------~k~~ah~~~il~C~lS-----Pd~k~lat~ssdktv~iwn--~~~~-~kle~~l~gh~rWvWdc~FS~dg~Ylv 274 (311)
T KOG0315|consen 209 ------HKFQAHNGHILRCLLS-----PDVKYLATCSSDKTVKIWN--TDDF-FKLELVLTGHQRWVWDCAFSADGEYLV 274 (311)
T ss_pred ------hheecccceEEEEEEC-----CCCcEEEeecCCceEEEEe--cCCc-eeeEEEeecCCceEEeeeeccCccEEE
Confidence 1135667788888999 9999999999999999995 4444 445667889999999999999999999
Q ss_pred EecCCCcEEEEEecCCcee
Q 021036 259 SCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~ 277 (318)
+++.|+++++|++..++..
T Consensus 275 Tassd~~~rlW~~~~~k~v 293 (311)
T KOG0315|consen 275 TASSDHTARLWDLSAGKEV 293 (311)
T ss_pred ecCCCCceeecccccCcee
Confidence 9999999999999987654
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=5.1e-26 Score=213.48 Aligned_cols=230 Identities=20% Similarity=0.196 Sum_probs=169.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCC-cee--cchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLP-LIT--ADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+...+++|+.|+.|++||+....... ... ........ .+.++.|+|.. +.+|++++.
T Consensus 494 dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~---~v~~l~~~~~~-----------------~~~las~~~ 553 (793)
T PLN00181 494 DGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRS---KLSGICWNSYI-----------------KSQVASSNF 553 (793)
T ss_pred CCCEEEEEeCCCEEEEEECCcccccccccccceEEecccC---ceeeEEeccCC-----------------CCEEEEEeC
Confidence 44568999999999999986421100 000 00011111 23346776653 489999999
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
||.|++||+.++ +.+..+.+|.+.|++++| + .++.+|++|+.|++|++||++++....
T Consensus 554 Dg~v~lWd~~~~--------------~~~~~~~~H~~~V~~l~~-------~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~ 612 (793)
T PLN00181 554 EGVVQVWDVARS--------------QLVTEMKEHEKRVWSIDY-------SSADPTLLASGSDDGSVKLWSINQGVSIG 612 (793)
T ss_pred CCeEEEEECCCC--------------eEEEEecCCCCCEEEEEE-------cCCCCCEEEEEcCCCEEEEEECCCCcEEE
Confidence 999999999874 456778899999999999 5 478899999999999999999887766
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..+ ..+.++.|. ++++.+|++|+.||.|++|| .+..+ .++..+.+|...|.++.|.
T Consensus 613 ~~~~~---------------~~v~~v~~~----~~~g~~latgs~dg~I~iwD--~~~~~-~~~~~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 613 TIKTK---------------ANICCVQFP----SESGRSLAFGSADHKVYYYD--LRNPK-LPLCTMIGHSKTVSYVRFV 670 (793)
T ss_pred EEecC---------------CCeEEEEEe----CCCCCEEEEEeCCCeEEEEE--CCCCC-ccceEecCCCCCEEEEEEe
Confidence 55432 267888886 36799999999999999995 44432 1455677899999999997
Q ss_pred CCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++.+|++++.|++|++||++...... ... ....+.+|...+..++|+|++.+||+|.
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~-~~~-------~l~~~~gh~~~i~~v~~s~~~~~lasgs 727 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGI-NET-------PLHSFMGHTNVKNFVGLSVSDGYIATGS 727 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCcccc-CCc-------ceEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 67899999999999999987532100 000 0013445777889999999999999984
No 37
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.2e-27 Score=176.15 Aligned_cols=188 Identities=16% Similarity=0.197 Sum_probs=161.3
Q ss_pred CCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 69 SSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 69 ~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
..+.++|..+.++-+|+|.++++.|.+|++|+... +.+++++.+|...|..++. +.+..
T Consensus 14 ~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~r--------------g~liktYsghG~EVlD~~~-------s~Dns 72 (307)
T KOG0316|consen 14 DCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR--------------GALIKTYSGHGHEVLDAAL-------SSDNS 72 (307)
T ss_pred cccccceEEEEEccCCCEEEEcCCCceEEeecccc--------------cceeeeecCCCceeeeccc-------ccccc
Confidence 34566777777777779999999999999999988 4578999999999999999 78888
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
.|++|+.|..+.+||+.+|+....+.+|.. .|+.+.|+ .+...+++|+.|.++++|| -+
T Consensus 73 kf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a--------------qVNtV~fN-----eesSVv~SgsfD~s~r~wD--CR 131 (307)
T KOG0316|consen 73 KFASCGGDKAVQVWDVNTGKVDRRFRGHLA--------------QVNTVRFN-----EESSVVASGSFDSSVRLWD--CR 131 (307)
T ss_pred ccccCCCCceEEEEEcccCeeeeecccccc--------------eeeEEEec-----CcceEEEeccccceeEEEE--cc
Confidence 999999999999999999999988876654 89999999 8899999999999999994 55
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
...++|++.+......|.++... ++.|++|+.||+++.||++.+.+..-... .+|++++|++
T Consensus 132 S~s~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g----------------~pit~vs~s~ 193 (307)
T KOG0316|consen 132 SRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFG----------------HPITSVSFSK 193 (307)
T ss_pred cCCCCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcC----------------CcceeEEecC
Confidence 55666999998888899888776 66799999999999999998877642222 2899999999
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
|++..+.+
T Consensus 194 d~nc~La~ 201 (307)
T KOG0316|consen 194 DGNCSLAS 201 (307)
T ss_pred CCCEEEEe
Confidence 99876654
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=6.7e-27 Score=177.35 Aligned_cols=216 Identities=19% Similarity=0.302 Sum_probs=168.2
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP 104 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 104 (318)
..|.+.|.|+...+.+.... .|.-.+... .++|++.. .+.+++++.||+++|||....
T Consensus 36 G~G~L~ile~~~~~gi~e~~--s~d~~D~Lf---dV~Wse~~-----------------e~~~~~a~GDGSLrl~d~~~~ 93 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQ--SYDTEDGLF---DVAWSENH-----------------ENQVIAASGDGSLRLFDLTMP 93 (311)
T ss_pred cCceEEEEecCCCCCeEEEE--eeeccccee---EeeecCCC-----------------cceEEEEecCceEEEeccCCC
Confidence 35777787887555444433 233344433 48999887 689999999999999996543
Q ss_pred ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccce
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLK 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~ 184 (318)
..++..++.|...|.++.| +...++.++++|.|++|++|+...++.+.++.+|..
T Consensus 94 -------------s~Pi~~~kEH~~EV~Svdw------n~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~------ 148 (311)
T KOG0277|consen 94 -------------SKPIHKFKEHKREVYSVDW------NTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS------ 148 (311)
T ss_pred -------------CcchhHHHhhhhheEEecc------ccccceeEEeeccCCceEeecCCCCcceEeecCCcc------
Confidence 3588899999999999999 455667899999999999999999988888876654
Q ss_pred eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCC
Q 021036 185 EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQD 263 (318)
Q Consensus 185 ~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d 263 (318)
-|+...|+ |..+++|++++.|+.+++||++... + .+. +..|...|.++.|+. +...++||+.|
T Consensus 149 --------~Iy~a~~s----p~~~nlfas~Sgd~~l~lwdvr~~g-k--~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~vd 212 (311)
T KOG0277|consen 149 --------CIYQAAFS----PHIPNLFASASGDGTLRLWDVRSPG-K--FMS-IEAHNSEILCCDWSKYNHNVLATGGVD 212 (311)
T ss_pred --------EEEEEecC----CCCCCeEEEccCCceEEEEEecCCC-c--eeE-EEeccceeEeecccccCCcEEEecCCC
Confidence 78899999 4678999999999999999876653 3 232 778999999999998 56689999999
Q ss_pred CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEE
Q 021036 264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMV 316 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~ 316 (318)
+.|+.||++.-...- ..+.+|.-.|+.|+|||.. ..||++
T Consensus 213 ~~vr~wDir~~r~pl-------------~eL~gh~~AVRkvk~Sph~~~lLaSa 253 (311)
T KOG0277|consen 213 NLVRGWDIRNLRTPL-------------FELNGHGLAVRKVKFSPHHASLLASA 253 (311)
T ss_pred ceEEEEehhhccccc-------------eeecCCceEEEEEecCcchhhHhhhc
Confidence 999999998744322 1334577799999999953 455543
No 39
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=8.8e-27 Score=189.81 Aligned_cols=255 Identities=15% Similarity=0.197 Sum_probs=178.7
Q ss_pred cCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEE
Q 021036 9 SNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSIL 87 (318)
Q Consensus 9 ~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l 87 (318)
..++-+.+...+++++..+.+.|||+.+....+.... ...|+.++.+|...-.++.+++. ...|
T Consensus 129 RaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 129 RARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------ECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred hhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------cCCCceEEEeecccccccccccccceeE
Confidence 3456677777888899999999999877443332210 11223333333333333333332 5689
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++|+.|+.|.+||++..... .....+...+.+|.+.|..++|+|+ +..+|++++.|+.+.|||++++
T Consensus 194 ls~~~d~~i~lwdi~~~~~~-------~~~~~p~~~~~~h~~~VeDV~~h~~------h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKE-------DKVVDPKTIFSGHEDVVEDVAWHPL------HEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred eeccCCCcEEEEeccccccC-------CccccceEEeecCCcceehhhcccc------chhhheeecCCCeEEEEEcCCC
Confidence 99999999999999864310 0113456678999999999999544 4467999999999999999963
Q ss_pred --ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 168 --ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
+..+.. .+|.++|++++|+ |.++.+||+|+.|++|++| |+|.-.. ++.++.+|...|
T Consensus 261 ~~~~~~~~--------------~ah~~~vn~~~fn----p~~~~ilAT~S~D~tV~Lw--DlRnL~~-~lh~~e~H~dev 319 (422)
T KOG0264|consen 261 TSKPSHSV--------------KAHSAEVNCVAFN----PFNEFILATGSADKTVALW--DLRNLNK-PLHTFEGHEDEV 319 (422)
T ss_pred CCCCcccc--------------cccCCceeEEEeC----CCCCceEEeccCCCcEEEe--echhccc-CceeccCCCcce
Confidence 222222 4566799999999 4678899999999999999 5666543 788999999999
Q ss_pred eEEEEcCC-CCEEEEecCCCcEEEEEecCCceeee-ecCCC-CCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 246 TGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQV-SIPTN-TPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 246 ~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.+|.|+|. ...||+++.|+.+.+||+..-...+. ..... .+. --....||...|..+.|+|+..+++
T Consensus 320 ~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppE--llF~HgGH~~kV~DfsWnp~ePW~I 389 (422)
T KOG0264|consen 320 FQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPE--LLFIHGGHTAKVSDFSWNPNEPWTI 389 (422)
T ss_pred EEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcc--eeEEecCcccccccccCCCCCCeEE
Confidence 99999997 55899999999999999975222111 10011 010 0012357999999999999776544
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=8.5e-28 Score=197.06 Aligned_cols=206 Identities=18% Similarity=0.229 Sum_probs=173.6
Q ss_pred CCCCcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|.-.|+++.+.| .+.+|++++.|+.|+||++... .+.++++.+|..+|.+++| +.+
T Consensus 210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~-------------~~~lrtf~gH~k~Vrd~~~-------s~~ 269 (503)
T KOG0282|consen 210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD-------------RRCLRTFKGHRKPVRDASF-------NNC 269 (503)
T ss_pred ccCCccccchhhhccceeeEEEecCCCceEEEEEEecC-------------cceehhhhcchhhhhhhhc-------ccc
Confidence 557888899999999 6899999999999999999863 4678999999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~ 225 (318)
|..|++++.|+.|++||+++|++...+.... .++++.|. |++ +.|++|+.|+.|+.|
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~---------------~~~cvkf~-----pd~~n~fl~G~sd~ki~~w-- 327 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFHLDK---------------VPTCVKFH-----PDNQNIFLVGGSDKKIRQW-- 327 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEecCC---------------CceeeecC-----CCCCcEEEEecCCCcEEEE--
Confidence 9999999999999999999999998887554 67899999 776 899999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee------------eeecCCCCCCccc-c-
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS------------QVSIPTNTPGLQS-C- 291 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~------------~~~~~~~~~~~~~-~- 291 (318)
|+++++ .++++..|-+.|..+.|-++|+++++.++|++++||+.+..... .+..+++.+.+++ +
T Consensus 328 DiRs~k--vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~ 405 (503)
T KOG0282|consen 328 DIRSGK--VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM 405 (503)
T ss_pred eccchH--HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc
Confidence 777887 77888889999999999999999999999999999998754332 2334555554431 1
Q ss_pred ------------------ccCCCcc--eeeeEEEEcCCCcEEEEEe
Q 021036 292 ------------------TDLPDAF--VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 292 ------------------~~~~~h~--~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+|. +.-..|.|||||++|++|.
T Consensus 406 dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 406 DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 1123664 4456899999999999986
No 41
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=7.6e-26 Score=187.49 Aligned_cols=250 Identities=16% Similarity=0.169 Sum_probs=188.8
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc----------------------
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR---------------------- 67 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~---------------------- 67 (318)
.++.|+.. -+++|-..|++||||....+.+.+-...- ..+. +..++|++++.
T Consensus 65 AkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~v--~aG~---I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 65 AKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQV--LAGP---IKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN 138 (603)
T ss_pred EEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeeee--cccc---cccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence 34555533 57888889999999987643322211111 1122 22266666542
Q ss_pred ----CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 68 ----LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 ----~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
+.+|...|+++++=|. .-.+++|++|++|.+|+-.. .+...+++.|...|+|++|
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP--------------FKFk~s~r~HskFV~~VRy------ 198 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPP--------------FKFKSSFREHSKFVNCVRY------ 198 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCC--------------eeeeecccccccceeeEEE------
Confidence 5688889999999887 45689999999999998654 5677788999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
+|+|++|++++.||++.+||-.+++.+..+... .+|++.|..++|+ ||+..|++++.|.++++
T Consensus 199 -sPDG~~Fat~gsDgki~iyDGktge~vg~l~~~-----------~aHkGsIfalsWs-----PDs~~~~T~SaDkt~KI 261 (603)
T KOG0318|consen 199 -SPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS-----------DAHKGSIFALSWS-----PDSTQFLTVSADKTIKI 261 (603)
T ss_pred -CCCCCeEEEecCCccEEEEcCCCccEEEEecCC-----------CCccccEEEEEEC-----CCCceEEEecCCceEEE
Confidence 999999999999999999999999988887642 4588899999999 99999999999999999
Q ss_pred eeeccCCC---------------------------------------eeeEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 223 WKCDISCN---------------------------------------KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 223 w~~~~~~~---------------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
||+..+.- ...++..+.+|...|+++..+|++++|++|+.|
T Consensus 262 WdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 262 WDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred EEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 97421100 001223456899999999999999999999999
Q ss_pred CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 264 NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 264 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
|.|.-|+..++....+.... |...|.+++-+..+.++.+
T Consensus 342 G~I~~W~~~~g~~~~~~g~~-------------h~nqI~~~~~~~~~~~~t~ 380 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDRLAGKG-------------HTNQIKGMAASESGELFTI 380 (603)
T ss_pred ceEEEEecCCcccccccccc-------------ccceEEEEeecCCCcEEEE
Confidence 99999999887766553332 4556777776665555443
No 42
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=7.1e-26 Score=198.28 Aligned_cols=209 Identities=18% Similarity=0.150 Sum_probs=149.0
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILA 88 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~ 88 (318)
..+.+.+.+.+++||.|++|++||++++....... .|...+.+|...|.+++|+|+ +++|+
T Consensus 81 v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~------------------~~l~~L~gH~~~V~~l~f~P~~~~iLa 142 (493)
T PTZ00421 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS------------------DPIVHLQGHTKKVGIVSFHPSAMNVLA 142 (493)
T ss_pred EEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC------------------cceEEecCCCCcEEEEEeCcCCCCEEE
Confidence 34444456779999999999999998753211110 011123344555555555554 47999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+|+.|+.|+|||++++ +.+..+.+|...|.+++| ++++.+|++++.|++|++||+++++
T Consensus 143 Sgs~DgtVrIWDl~tg--------------~~~~~l~~h~~~V~sla~-------spdG~lLatgs~Dg~IrIwD~rsg~ 201 (493)
T PTZ00421 143 SAGADMVVNVWDVERG--------------KAVEVIKCHSDQITSLEW-------NLDGSLLCTTSKDKKLNIIDPRDGT 201 (493)
T ss_pred EEeCCCEEEEEECCCC--------------eEEEEEcCCCCceEEEEE-------ECCCCEEEEecCCCEEEEEECCCCc
Confidence 9999999999999984 355678899999999999 8899999999999999999999988
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe----CCCcEEEeeeccCCCeeeEeeeeecc-cC
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK----GSGSFDLWKCDISCNKFDKVGSYNAH-DQ 243 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~~~~h-~~ 243 (318)
.+..+..|.. .....+.|. +++..+++++ .|+.|++|| .+.... ++.....+ ..
T Consensus 202 ~v~tl~~H~~-------------~~~~~~~w~-----~~~~~ivt~G~s~s~Dr~VklWD--lr~~~~-p~~~~~~d~~~ 260 (493)
T PTZ00421 202 IVSSVEAHAS-------------AKSQRCLWA-----KRKDLIITLGCSKSQQRQIMLWD--TRKMAS-PYSTVDLDQSS 260 (493)
T ss_pred EEEEEecCCC-------------CcceEEEEc-----CCCCeEEEEecCCCCCCeEEEEe--CCCCCC-ceeEeccCCCC
Confidence 7776665542 123456677 6666666544 478999995 443321 33333322 34
Q ss_pred ceeEEEEcCCCCEEEEec-CCCcEEEEEecCCceee
Q 021036 244 VVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~ 278 (318)
.+....|++++.+|++++ .|+.|++||+.++....
T Consensus 261 ~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 261 ALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred ceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEE
Confidence 555667899999988887 59999999999876543
No 43
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=4.4e-26 Score=176.88 Aligned_cols=242 Identities=15% Similarity=0.137 Sum_probs=172.5
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCC-CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSN-CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA 88 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~ 88 (318)
.++.+.....++++|-|++||+|+++.. ...++. ...+.+. +++++|+.++ ..++
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka---~~~~~~P---vL~v~Wsddg------------------skVf 88 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKA---QQSHDGP---VLDVCWSDDG------------------SKVF 88 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchh---hhccCCC---eEEEEEccCC------------------ceEE
Confidence 4555655556679999999999999874 433311 2233443 3336666665 9999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+|+.|+.+++||+.+++ +..+..|.++|.++.|-+ ...-..|+|||.|++|++||+++..
T Consensus 89 ~g~~Dk~~k~wDL~S~Q---------------~~~v~~Hd~pvkt~~wv~-----~~~~~cl~TGSWDKTlKfWD~R~~~ 148 (347)
T KOG0647|consen 89 SGGCDKQAKLWDLASGQ---------------VSQVAAHDAPVKTCHWVP-----GMNYQCLVTGSWDKTLKFWDTRSSN 148 (347)
T ss_pred eeccCCceEEEEccCCC---------------eeeeeecccceeEEEEec-----CCCcceeEecccccceeecccCCCC
Confidence 99999999999999864 456788999999999922 1223589999999999999999888
Q ss_pred eeeeecccccccccc---------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 169 LQKSAEAHCVPFSLL---------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
.+.++...+..+... +.....-+..+++++.. ++.+.+|.|+-+|.+.
T Consensus 149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f-----~d~~~~alGsiEGrv~ 223 (347)
T KOG0647|consen 149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACF-----QDKDGFALGSIEGRVA 223 (347)
T ss_pred eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEE-----ecCCceEeeeecceEE
Confidence 777665443322110 01112234467888887 7888889999999999
Q ss_pred EeeeccCCCeeeEeeeeeccc---------CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccc
Q 021036 222 LWKCDISCNKFDKVGSYNAHD---------QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 292 (318)
+..++....+ .-.+|+.|. ..|.+++|+|....|+|++.||+..+||-..+.....
T Consensus 224 iq~id~~~~~--~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~------------- 288 (347)
T KOG0647|consen 224 IQYIDDPNPK--DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT------------- 288 (347)
T ss_pred EEecCCCCcc--CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhc-------------
Confidence 9877654322 233455554 2467789999888999999999999999866443321
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEE
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...|..+|++.+|+.+|.++|-+
T Consensus 289 -s~~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 289 -SETHPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred -cCcCCCccceeEecCCCCEEEEE
Confidence 11244599999999999998864
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=1.1e-25 Score=211.11 Aligned_cols=234 Identities=15% Similarity=0.139 Sum_probs=170.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+++++||+.+++.+..+.. |... +.+++|+|.. +.+|++|+.||.|
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~----H~~~---V~~l~~~p~~-----------------~~~L~Sgs~Dg~v 600 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKE----HEKR---VWSIDYSSAD-----------------PTLLASGSDDGSV 600 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecC----CCCC---EEEEEEcCCC-----------------CCEEEEEcCCCEE
Confidence 45689999999999999988765443322 4333 4447776533 4899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~~~ 175 (318)
++||+.++. .+..+..+ ..|.++.| .++++.+|++|+.|+.|++||+++.+ ....+.
T Consensus 601 ~iWd~~~~~--------------~~~~~~~~-~~v~~v~~------~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~- 658 (793)
T PLN00181 601 KLWSINQGV--------------SIGTIKTK-ANICCVQF------PSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI- 658 (793)
T ss_pred EEEECCCCc--------------EEEEEecC-CCeEEEEE------eCCCCCEEEEEeCCCeEEEEECCCCCccceEec-
Confidence 999998754 34455544 57899999 34578999999999999999998764 233333
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC--CeeeEeeeeecccCceeEEEEcCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC--NKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.|...|.++.|. ++..|++++.|+.|++||+.... ....++..+.+|...+..++|+|+
T Consensus 659 -------------~h~~~V~~v~f~------~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~ 719 (793)
T PLN00181 659 -------------GHSKTVSYVRFV------DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVS 719 (793)
T ss_pred -------------CCCCCEEEEEEe------CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCC
Confidence 345589999995 57789999999999999654221 112367788899999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.+|++|+.|+.|++|+....... ......... + .......|...|.+++|+|++.+|++|.
T Consensus 720 ~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~-~-~~~~~~~~~~~V~~v~ws~~~~~lva~~ 782 (793)
T PLN00181 720 DGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDP-V-SGLEVDDASQFISSVCWRGQSSTLVAAN 782 (793)
T ss_pred CCEEEEEeCCCEEEEEECCCCCceEEEecccCCc-c-cccccCCCCcEEEEEEEcCCCCeEEEec
Confidence 999999999999999997654322 111111000 0 0011234667899999999999999874
No 45
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=1e-26 Score=190.72 Aligned_cols=229 Identities=17% Similarity=0.252 Sum_probs=171.5
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
++..+.+...|.+++++.|+.|++|++.. ++|+.++. +|..+|.++.|+++|..
T Consensus 218 sai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~-------------------------gH~k~Vrd~~~s~~g~~ 272 (503)
T KOG0282|consen 218 SAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFK-------------------------GHRKPVRDASFNNCGTS 272 (503)
T ss_pred chhhhccceeeEEEecCCCceEEEEEEecCcceehhhh-------------------------cchhhhhhhhccccCCe
Confidence 44567777889999999999999999876 66655543 34445555555555599
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~ 165 (318)
+++++.|+.|++||+++|++ +..+.. ...++|+.| .|++ +.|++|+.|+.|+.||++
T Consensus 273 fLS~sfD~~lKlwDtETG~~--------------~~~f~~-~~~~~cvkf-------~pd~~n~fl~G~sd~ki~~wDiR 330 (503)
T KOG0282|consen 273 FLSASFDRFLKLWDTETGQV--------------LSRFHL-DKVPTCVKF-------HPDNQNIFLVGGSDKKIRQWDIR 330 (503)
T ss_pred eeeeecceeeeeeccccceE--------------EEEEec-CCCceeeec-------CCCCCcEEEEecCCCcEEEEecc
Confidence 99999999999999999764 334432 346799999 5555 889999999999999999
Q ss_pred CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC---------------
Q 021036 166 IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--------------- 230 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--------------- 230 (318)
+++.++.+..|-. .|..+.|- ++|..|++.+.|+.+++|+++....
T Consensus 331 s~kvvqeYd~hLg--------------~i~~i~F~-----~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~ 391 (503)
T KOG0282|consen 331 SGKVVQEYDRHLG--------------AILDITFV-----DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCL 391 (503)
T ss_pred chHHHHHHHhhhh--------------heeeeEEc-----cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcce
Confidence 9998877665443 78889998 8999999999999999998432100
Q ss_pred ------ee---------------------eEeeeeeccc--CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 231 ------KF---------------------DKVGSYNAHD--QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 231 ------~~---------------------~~~~~~~~h~--~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
.+ ..-..+++|. +.-..+.|||||.+|++|+.||.+.+||.++-++..
T Consensus 392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~--- 468 (503)
T KOG0282|consen 392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVS--- 468 (503)
T ss_pred ecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhh---
Confidence 00 0001234554 334578999999999999999999999998866543
Q ss_pred CCCCCCccccccCCCcceeeeEEEEcCCC-cEEEEE
Q 021036 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGN-LVVAMV 316 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~~~ 316 (318)
.+..|.+++..+.|+|.. ..+|++
T Consensus 469 -----------~lkah~~~ci~v~wHP~e~Skvat~ 493 (503)
T KOG0282|consen 469 -----------KLKAHDQPCIGVDWHPVEPSKVATC 493 (503)
T ss_pred -----------ccccCCcceEEEEecCCCcceeEec
Confidence 334466799999999953 456665
No 46
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.5e-26 Score=170.65 Aligned_cols=229 Identities=16% Similarity=0.146 Sum_probs=174.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+.+-.+|+++|+++|+|+...+.++++... |-.+|.+.+.+.+...+++|+.|.
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsg-------------------------hG~EVlD~~~s~Dnskf~s~GgDk 81 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSG-------------------------HGHEVLDAALSSDNSKFASCGGDK 81 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecC-------------------------CCceeeeccccccccccccCCCCc
Confidence 3456689999999999999998887665543 335556666666668999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc--ceeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--ELQKS 172 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~ 172 (318)
.|.+||+++| +.++.+.+|.+.|+.++| +.+...+++|+.|.++++||.++. ++++.
T Consensus 82 ~v~vwDV~TG--------------kv~Rr~rgH~aqVNtV~f-------NeesSVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 82 AVQVWDVNTG--------------KVDRRFRGHLAQVNTVRF-------NEESSVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred eEEEEEcccC--------------eeeeecccccceeeEEEe-------cCcceEEEeccccceeEEEEcccCCCCccch
Confidence 9999999994 577899999999999999 888899999999999999999864 34443
Q ss_pred ecccccccccc------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 173 AEAHCVPFSLL------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 173 ~~~~~~~~~~~------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+......+.-+ ......-..||++++|+ ++++..+.++-|+++++- |..
T Consensus 141 ldea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s-----~d~nc~La~~l~stlrLl--Dk~ 213 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFS-----KDGNCSLASSLDSTLRLL--DKE 213 (307)
T ss_pred hhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEec-----CCCCEEEEeeccceeeec--ccc
Confidence 32211111000 01122346799999999 999999999999999997 777
Q ss_pred CCeeeEeeeeecccCceeEEE--EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLA--WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+++ .+..+++|...-+.+. ++.....+++|++||.|++||+....+.......... -+.++++
T Consensus 214 tGk--lL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v-------------~v~dl~~ 278 (307)
T KOG0316|consen 214 TGK--LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTV-------------IVTDLSC 278 (307)
T ss_pred hhH--HHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCce-------------eEEeeec
Confidence 887 7888899987655543 4445568999999999999999887766533333322 3789999
Q ss_pred cCCCc
Q 021036 307 SPGNL 311 (318)
Q Consensus 307 sp~~~ 311 (318)
+|.-.
T Consensus 279 hp~~~ 283 (307)
T KOG0316|consen 279 HPTMD 283 (307)
T ss_pred ccCcc
Confidence 99543
No 47
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=3.3e-25 Score=194.09 Aligned_cols=237 Identities=15% Similarity=0.081 Sum_probs=168.5
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCCCcE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRSGKV 96 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i 96 (318)
..+++++.+.....|+...+..+.... ..+. +.-++ ..+.+|..+|.+++|+| ++++|++|+.||+|
T Consensus 33 ~~~~~~n~~~~a~~w~~~gg~~v~~~~--~~G~---------~~~~~-~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 33 SNTIACNDRFIAVPWQQLGSTAVLKHT--DYGK---------LASNP-PILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred CCcEeECCceEEEEEecCCceEEeecc--cccc---------CCCCC-ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 446778888888888776553211111 1110 00011 12557888888888888 68999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
++||+.++.... .....+..+.+|...|.+++| ++.+ .+|++++.|++|+|||+.+++....+..
T Consensus 101 kIWdi~~~~~~~-------~~~~~l~~L~gH~~~V~~l~f-------~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~ 166 (493)
T PTZ00421 101 MGWGIPEEGLTQ-------NISDPIVHLQGHTKKVGIVSF-------HPSAMNVLASAGADMVVNVWDVERGKAVEVIKC 166 (493)
T ss_pred EEEecCCCcccc-------ccCcceEEecCCCCcEEEEEe-------CcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC
Confidence 999997642100 002356678899999999999 6654 6899999999999999998877666654
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc-eeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV-VTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~ 254 (318)
|. ..|.+++|+ |++.+|++++.|+.|++| |.++++ .+.++.+|.+. +..+.|.+++
T Consensus 167 h~--------------~~V~sla~s-----pdG~lLatgs~Dg~IrIw--D~rsg~--~v~tl~~H~~~~~~~~~w~~~~ 223 (493)
T PTZ00421 167 HS--------------DQITSLEWN-----LDGSLLCTTSKDKKLNII--DPRDGT--IVSSVEAHASAKSQRCLWAKRK 223 (493)
T ss_pred CC--------------CceEEEEEE-----CCCCEEEEecCCCEEEEE--ECCCCc--EEEEEecCCCCcceEEEEcCCC
Confidence 43 489999999 999999999999999999 566665 56777888764 4567899987
Q ss_pred CEEEEec----CCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 255 CCLYSCS----QDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 255 ~~l~s~~----~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+++++ .|+.|++||++.... ....... +...+....|++++.+|+++
T Consensus 224 ~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-------------~~~~~~~~~~d~d~~~L~lg 277 (493)
T PTZ00421 224 DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD-------------QSSALFIPFFDEDTNLLYIG 277 (493)
T ss_pred CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC-------------CCCceEEEEEcCCCCEEEEE
Confidence 7777654 579999999986332 1111101 11245567788888887765
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=2.4e-26 Score=197.28 Aligned_cols=199 Identities=18% Similarity=0.195 Sum_probs=167.1
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
......++++|+|+++++|+++..+.... . +.+.-...-..|.-+|++++++|+.+++|||+.|
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~----~------------~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD 484 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAF----P------------IVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD 484 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccc----c------------ceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence 34455689999999999999987322111 0 1111111223477778888888888999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.+.+||+++. .+....+.+|...|+|+.| ++..+.++|+|.|++|+||.+.+..+++++
T Consensus 485 ktaKiW~le~--------------~~l~~vLsGH~RGvw~V~F-------s~~dq~laT~SgD~TvKIW~is~fSClkT~ 543 (775)
T KOG0319|consen 485 KTAKIWDLEQ--------------LRLLGVLSGHTRGVWCVSF-------SKNDQLLATCSGDKTVKIWSISTFSCLKTF 543 (775)
T ss_pred cceeeecccC--------------ceEEEEeeCCccceEEEEe-------ccccceeEeccCCceEEEEEeccceeeeee
Confidence 9999999995 5678899999999999999 899999999999999999999999999999
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.+|.. .|....|- .+++.|++++.||-|++| +..+.. ++.++.+|+..|++++.+|.
T Consensus 544 eGH~~--------------aVlra~F~-----~~~~qliS~~adGliKlW--nikt~e--C~~tlD~H~DrvWaL~~~~~ 600 (775)
T KOG0319|consen 544 EGHTS--------------AVLRASFI-----RNGKQLISAGADGLIKLW--NIKTNE--CEMTLDAHNDRVWALSVSPL 600 (775)
T ss_pred cCccc--------------eeEeeeee-----eCCcEEEeccCCCcEEEE--eccchh--hhhhhhhccceeEEEeecCc
Confidence 88776 78888888 899999999999999999 566766 77899999999999999999
Q ss_pred CCEEEEecCCCcEEEEEec
Q 021036 254 GCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~ 272 (318)
+.+++||+.||.|.+|.=-
T Consensus 601 ~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 601 LDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred cceeEecCCCeEEEEeecC
Confidence 9999999999999999643
No 49
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.6e-25 Score=192.75 Aligned_cols=234 Identities=15% Similarity=0.169 Sum_probs=176.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
++...++||+.||.|++||..++-|..+++. |... ++.+.|...+ +.+++.+.||
T Consensus 360 pDgq~iaTG~eDgKVKvWn~~SgfC~vTFte----Hts~---Vt~v~f~~~g------------------~~llssSLDG 414 (893)
T KOG0291|consen 360 PDGQLIATGAEDGKVKVWNTQSGFCFVTFTE----HTSG---VTAVQFTARG------------------NVLLSSSLDG 414 (893)
T ss_pred CCCcEEEeccCCCcEEEEeccCceEEEEecc----CCCc---eEEEEEEecC------------------CEEEEeecCC
Confidence 3556789999999999999999988777765 3333 3336676666 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEEECCCcceeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIWDGYIQELQKS 172 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~ 172 (318)
+|+.||+.... ..+++... .-...|++. .+.|++++.|+.|. .|.+|++.+|+.+..
T Consensus 415 tVRAwDlkRYr--------------NfRTft~P~p~Qfscvav-------D~sGelV~AG~~d~F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 415 TVRAWDLKRYR--------------NFRTFTSPEPIQFSCVAV-------DPSGELVCAGAQDSFEIFVWSVQTGQLLDI 473 (893)
T ss_pred eEEeeeecccc--------------eeeeecCCCceeeeEEEE-------cCCCCEEEeeccceEEEEEEEeecCeeeeh
Confidence 99999999743 44566542 234578888 88899999999885 799999999999988
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+.+|+. ||.+++|+ |.+..|+++++|.+|++|++-.+.++. .++ .+...+..++|+|
T Consensus 474 LsGHEg--------------PVs~l~f~-----~~~~~LaS~SWDkTVRiW~if~s~~~v---Etl-~i~sdvl~vsfrP 530 (893)
T KOG0291|consen 474 LSGHEG--------------PVSGLSFS-----PDGSLLASGSWDKTVRIWDIFSSSGTV---ETL-EIRSDVLAVSFRP 530 (893)
T ss_pred hcCCCC--------------cceeeEEc-----cccCeEEeccccceEEEEEeeccCcee---eeE-eeccceeEEEEcC
Confidence 877665 89999999 999999999999999999764444432 233 3567889999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCcee-eeecCCCCC----Ccc-ccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTP----GLQ-SCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~----~~~-~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|+.|+++..||.|.+||....... .+....... ... ............+.+++++||..|++|.
T Consensus 531 dG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG 601 (893)
T KOG0291|consen 531 DGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGG 601 (893)
T ss_pred CCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecC
Confidence 9999999999999999999764433 111111000 000 0111123456889999999999988874
No 50
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=5.7e-26 Score=180.30 Aligned_cols=192 Identities=18% Similarity=0.245 Sum_probs=163.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++|.|.+|+.||+.++-|+..+.. |+..+- .+.-+ .||.++|+++.|.+|+
T Consensus 206 d~ilS~srD~tik~We~~tg~cv~t~~~----h~ewvr---~v~v~------------------~DGti~As~s~dqtl~ 260 (406)
T KOG0295|consen 206 DHILSCSRDNTIKAWECDTGYCVKTFPG----HSEWVR---MVRVN------------------QDGTIIASCSNDQTLR 260 (406)
T ss_pred CeeeecccccceeEEecccceeEEeccC----chHhEE---EEEec------------------CCeeEEEecCCCceEE
Confidence 6689999999999999999999888765 444322 23334 4459999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC--------CCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD--------SSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--------~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
+|-+.+++|. ..++.|..+|.|++|.|+..- +...+.++.+++.|++|++||+.++.+
T Consensus 261 vW~~~t~~~k--------------~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 261 VWVVATKQCK--------------AELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred EEEeccchhh--------------hhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 9999997643 568899999999999998641 112346999999999999999999999
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
+.++.+|.. .|..++|+ |.|++|+++..|+++++| |.++.+ +...+..|+.-+++++
T Consensus 327 L~tL~ghdn--------------wVr~~af~-----p~Gkyi~ScaDDktlrvw--dl~~~~--cmk~~~ah~hfvt~lD 383 (406)
T KOG0295|consen 327 LFTLVGHDN--------------WVRGVAFS-----PGGKYILSCADDKTLRVW--DLKNLQ--CMKTLEAHEHFVTSLD 383 (406)
T ss_pred EEEEecccc--------------eeeeeEEc-----CCCeEEEEEecCCcEEEE--Eeccce--eeeccCCCcceeEEEe
Confidence 999887765 99999999 999999999999999999 556666 6677889999999999
Q ss_pred EcCCCCEEEEecCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|+.+..++++|+-|.++++|..
T Consensus 384 fh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 384 FHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCCCceEEeccccceeeeeec
Confidence 9999999999999999999974
No 51
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.8e-27 Score=188.05 Aligned_cols=202 Identities=18% Similarity=0.249 Sum_probs=159.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++|+.|.+|+|||.++..|+..+.. |.+ .|.|+.+.. +.+++|+.|.+|+
T Consensus 208 ~kiVSGlrDnTikiWD~n~~~c~~~L~G----HtG---------------------SVLCLqyd~--rviisGSSDsTvr 260 (499)
T KOG0281|consen 208 EKIVSGLRDNTIKIWDKNSLECLKILTG----HTG---------------------SVLCLQYDE--RVIVSGSSDSTVR 260 (499)
T ss_pred hhhhcccccCceEEeccccHHHHHhhhc----CCC---------------------cEEeeeccc--eEEEecCCCceEE
Confidence 3479999999999999998777555432 333 334443332 6999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+||+++++ ++.++-.|...|..+.| + ..++++++.|.++.+||+.+...+.
T Consensus 261 vWDv~tge--------------~l~tlihHceaVLhlrf-------~--ng~mvtcSkDrsiaVWdm~sps~it------ 311 (499)
T KOG0281|consen 261 VWDVNTGE--------------PLNTLIHHCEAVLHLRF-------S--NGYMVTCSKDRSIAVWDMASPTDIT------ 311 (499)
T ss_pred EEeccCCc--------------hhhHHhhhcceeEEEEE-------e--CCEEEEecCCceeEEEeccCchHHH------
Confidence 99999965 56788899999999999 2 3489999999999999998754221
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+..+..+|.+.|+.+.|+ .+++++++.|.+|++| ++.+.+ .+.++.+|...|.|+.+. ++++
T Consensus 312 -----~rrVLvGHrAaVNvVdfd-------~kyIVsASgDRTikvW--~~st~e--fvRtl~gHkRGIAClQYr--~rlv 373 (499)
T KOG0281|consen 312 -----LRRVLVGHRAAVNVVDFD-------DKYIVSASGDRTIKVW--STSTCE--FVRTLNGHKRGIACLQYR--DRLV 373 (499)
T ss_pred -----HHHHHhhhhhheeeeccc-------cceEEEecCCceEEEE--ecccee--eehhhhcccccceehhcc--CeEE
Confidence 113345566789998886 4699999999999999 666666 788999999999988775 8899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS 307 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s 307 (318)
++|+.|.+|++||+..|.+.. -+.||..-|.++.|.
T Consensus 374 VSGSSDntIRlwdi~~G~cLR--------------vLeGHEeLvRciRFd 409 (499)
T KOG0281|consen 374 VSGSSDNTIRLWDIECGACLR--------------VLEGHEELVRCIRFD 409 (499)
T ss_pred EecCCCceEEEEeccccHHHH--------------HHhchHHhhhheeec
Confidence 999999999999999887764 233455667777775
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=7.8e-25 Score=181.13 Aligned_cols=217 Identities=24% Similarity=0.390 Sum_probs=172.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.|+.+++||+.+++....+.. +... +.++.|+|.+ +++++++.||.|+
T Consensus 64 ~~l~~~~~~~~i~i~~~~~~~~~~~~~~----~~~~---i~~~~~~~~~------------------~~~~~~~~~~~i~ 118 (289)
T cd00200 64 TYLASGSSDKTIRLWDLETGECVRTLTG----HTSY---VSSVAFSPDG------------------RILSSSSRDKTIK 118 (289)
T ss_pred CEEEEEcCCCeEEEEEcCcccceEEEec----cCCc---EEEEEEcCCC------------------CEEEEecCCCeEE
Confidence 4688899999999999998755444332 2222 4457777766 8999998899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|++.++ +....+..|...|.++.| ++++.++++++.|+.|++||+++++....+..+
T Consensus 119 ~~~~~~~--------------~~~~~~~~~~~~i~~~~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~- 176 (289)
T cd00200 119 VWDVETG--------------KCLTTLRGHTDWVNSVAF-------SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGH- 176 (289)
T ss_pred EEECCCc--------------EEEEEeccCCCcEEEEEE-------cCcCCEEEEEcCCCcEEEEEccccccceeEecC-
Confidence 9999863 455667789999999999 777888888888999999999987766665533
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
...+.++.|+ |+++.+++++.++.|++| +.+..+ .+..+..|...+.++.|+|++.++
T Consensus 177 -------------~~~i~~~~~~-----~~~~~l~~~~~~~~i~i~--d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~ 234 (289)
T cd00200 177 -------------TGEVNSVAFS-----PDGEKLLSSSSDGTIKLW--DLSTGK--CLGTLRGHENGVNSVAFSPDGYLL 234 (289)
T ss_pred -------------ccccceEEEC-----CCcCEEEEecCCCcEEEE--ECCCCc--eecchhhcCCceEEEEEcCCCcEE
Confidence 3478999999 899899999999999999 455544 566676788899999999998899
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++++.|+.|++||+.++..... +..|...+.+++|+|++.+|+++.
T Consensus 235 ~~~~~~~~i~i~~~~~~~~~~~--------------~~~~~~~i~~~~~~~~~~~l~~~~ 280 (289)
T cd00200 235 ASGSEDGTIRVWDLRTGECVQT--------------LSGHTNSVTSLAWSPDGKRLASGS 280 (289)
T ss_pred EEEcCCCcEEEEEcCCceeEEE--------------ccccCCcEEEEEECCCCCEEEEec
Confidence 9888899999999986544321 112445899999999999988864
No 53
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.2e-25 Score=182.36 Aligned_cols=220 Identities=14% Similarity=0.237 Sum_probs=178.8
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|+.|+++.++|.+.++.+..+.. |.-. ++.+.++|+. ..+++++.|..|
T Consensus 231 ~~~ilTGG~d~~av~~d~~s~q~l~~~~G----h~kk---i~~v~~~~~~------------------~~v~~aSad~~i 285 (506)
T KOG0289|consen 231 SSKILTGGEDKTAVLFDKPSNQILATLKG----HTKK---ITSVKFHKDL------------------DTVITASADEII 285 (506)
T ss_pred CCcceecCCCCceEEEecchhhhhhhccC----cceE---EEEEEeccch------------------hheeecCCcceE
Confidence 35579999999999999999888776654 2222 3336677776 899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||...... .......|..+|+.+.. .+.|+||++++.|++..+.|++++..+......
T Consensus 286 ~vws~~~~s--------------~~~~~~~h~~~V~~ls~-------h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 286 RVWSVPLSS--------------EPTSSRPHEEPVTGLSL-------HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred Eeecccccc--------------Cccccccccccceeeee-------ccCCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 999997633 34567789999999999 899999999999999999999999877654322
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
. ..-.+++.+|+ |||.+|.+|..||.+++| |+..+. .+..|.+|+++|..++|+.+|-|
T Consensus 345 ~------------s~v~~ts~~fH-----pDgLifgtgt~d~~vkiw--dlks~~--~~a~Fpght~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 345 T------------SDVEYTSAAFH-----PDGLIFGTGTPDGVVKIW--DLKSQT--NVAKFPGHTGPVKAISFSENGYW 403 (506)
T ss_pred c------------ccceeEEeeEc-----CCceEEeccCCCceEEEE--EcCCcc--ccccCCCCCCceeEEEeccCceE
Confidence 1 12368899999 999999999999999999 455554 67889999999999999999999
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+++++|+.|++||++.-+.......+... .+.++.|.+.|++|+.+
T Consensus 404 Lat~add~~V~lwDLRKl~n~kt~~l~~~~-------------~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKNFKTIQLDEKK-------------EVNSLSFDQSGTYLGIA 450 (506)
T ss_pred EEEEecCCeEEEEEehhhcccceeeccccc-------------cceeEEEcCCCCeEEee
Confidence 999999999999999975543322222222 68999999999998875
No 54
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1.5e-25 Score=182.98 Aligned_cols=249 Identities=18% Similarity=0.165 Sum_probs=185.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccC-CCCcccccccCCCCCccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRL-SSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~-~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
+....+++|.|++|.-|++.+++...-+-... .+.. ....|...- ..|...++++++|+++++|++|+.|.
T Consensus 153 d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~-----ev~k---~~~~~~k~~r~~h~keil~~avS~Dgkylatgg~d~ 224 (479)
T KOG0299|consen 153 DDKRVFSASKDGTILKWDVLTGKKDRYIIERD-----EVLK---SHGNPLKESRKGHVKEILTLAVSSDGKYLATGGRDR 224 (479)
T ss_pred cccceeecCCCcceeeeehhcCcccccccccc-----hhhh---hccCCCCcccccccceeEEEEEcCCCcEEEecCCCc
Confidence 34456899999999999999988653322211 1111 222332222 37999999999999999999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|.||+.++. +.++.+.+|.+.|.+++| -.....|++++.|++|++|+++....+.++.
T Consensus 225 ~v~Iw~~~t~--------------ehv~~~~ghr~~V~~L~f-------r~gt~~lys~s~Drsvkvw~~~~~s~vetly 283 (479)
T KOG0299|consen 225 HVQIWDCDTL--------------EHVKVFKGHRGAVSSLAF-------RKGTSELYSASADRSVKVWSIDQLSYVETLY 283 (479)
T ss_pred eEEEecCccc--------------chhhcccccccceeeeee-------ecCccceeeeecCCceEEEehhHhHHHHHHh
Confidence 9999999984 466789999999999999 7777889999999999999998776666655
Q ss_pred ccccccccc---------------------------eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 175 AHCVPFSLL---------------------------KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 175 ~~~~~~~~~---------------------------~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+|+..+.-+ +.+..++...+-|++|- +...|++|+.+|.|.+| ++
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I------n~~HfvsGSdnG~IaLW--s~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI------NDEHFVSGSDNGSIALW--SL 355 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe------cccceeeccCCceEEEe--ee
Confidence 554322111 13456677789999996 77899999999999999 55
Q ss_pred CCCeeeEeeeee-cc-----------cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc--eeeeecCCCCCCcccccc
Q 021036 228 SCNKFDKVGSYN-AH-----------DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS--LSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 228 ~~~~~~~~~~~~-~h-----------~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~ 293 (318)
...+ ++.+.. +| ...|++++..|...++++|+.+|.|++|-+..+. +..+...+
T Consensus 356 ~KKk--plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls---------- 423 (479)
T KOG0299|consen 356 LKKK--PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS---------- 423 (479)
T ss_pred cccC--ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc----------
Confidence 4544 333321 12 2378999999999999999999999999998762 22221111
Q ss_pred CCCcceeeeEEEEcCCCcEEEEE
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-.+.|++++|+++|+.|++|
T Consensus 424 ---~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 424 ---LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ---cccEEEEEEEccCCCEEEEe
Confidence 22489999999999977765
No 55
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.94 E-value=6.6e-26 Score=175.77 Aligned_cols=195 Identities=17% Similarity=0.238 Sum_probs=159.7
Q ss_pred ccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 64 PVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 64 p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
|...+.+|.+.|..+.|+|+|.+||+|+.|..|.+|++... .+....+++|.+.|..+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-------------ceN~~~lkgHsgAVM~l~~------- 98 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-------------CENFWVLKGHSGAVMELHG------- 98 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-------------ccceeeeccccceeEeeee-------
Confidence 34457788999999999999999999999999999997643 2345677899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
..+++.+++++.|.+|+.||+++|+....++.|.. -|+.+.-+ .....++.+++.|+++++|
T Consensus 99 ~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~--------------~vNs~~p~----rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 99 MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS--------------FVNSLDPS----RRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred ccCCCEEEEecCCceEEEEecccceeeehhccccc--------------eeeecCcc----ccCCeEEEecCCCceEEEE
Confidence 89999999999999999999999999988887764 45555543 1345788899999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
|++... .++++. ....++++.|..++..+.+|+-|+.|++||++.+.... .+.+|.+.|++
T Consensus 161 --D~R~k~--~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~--------------~lsGh~DtIt~ 221 (338)
T KOG0265|consen 161 --DIRKKE--AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLY--------------TLSGHADTITG 221 (338)
T ss_pred --eecccc--hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcceE--------------EeecccCceee
Confidence 666655 455543 35578999999999999999999999999998765543 34556779999
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
+..+|+|.++.+
T Consensus 222 lsls~~gs~lls 233 (338)
T KOG0265|consen 222 LSLSRYGSFLLS 233 (338)
T ss_pred EEeccCCCcccc
Confidence 999999988764
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.94 E-value=1.7e-24 Score=179.18 Aligned_cols=218 Identities=19% Similarity=0.279 Sum_probs=171.3
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+.+++|++.+++....+.. +... +..+.|.|.+ +++++++.||.|
T Consensus 21 ~~~l~~~~~~g~i~i~~~~~~~~~~~~~~----~~~~---i~~~~~~~~~------------------~~l~~~~~~~~i 75 (289)
T cd00200 21 GKLLATGSGDGTIKVWDLETGELLRTLKG----HTGP---VRDVAASADG------------------TYLASGSSDKTI 75 (289)
T ss_pred CCEEEEeecCcEEEEEEeeCCCcEEEEec----CCcc---eeEEEECCCC------------------CEEEEEcCCCeE
Confidence 45678889999999999988763333222 2222 2346777766 899999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
++|++.+++ ....+..|...|.++.| .++++++++++.|+.+.+||+++++....+..+
T Consensus 76 ~i~~~~~~~--------------~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 76 RLWDLETGE--------------CVRTLTGHTSYVSSVAF-------SPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred EEEEcCccc--------------ceEEEeccCCcEEEEEE-------cCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 999998743 45667788889999999 777888888888999999999977766655533
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
...+.++.++ |++.++++++.++.|++|+ .+..+ .+..+..|...+.++.|+|+++.
T Consensus 135 --------------~~~i~~~~~~-----~~~~~l~~~~~~~~i~i~d--~~~~~--~~~~~~~~~~~i~~~~~~~~~~~ 191 (289)
T cd00200 135 --------------TDWVNSVAFS-----PDGTFVASSSQDGTIKLWD--LRTGK--CVATLTGHTGEVNSVAFSPDGEK 191 (289)
T ss_pred --------------CCcEEEEEEc-----CcCCEEEEEcCCCcEEEEE--ccccc--cceeEecCccccceEEECCCcCE
Confidence 3479999999 8888999888899999994 54444 55667788889999999999999
Q ss_pred EEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 257 LYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++.|+.|++||++.+...... ..|...+.+++|+|++.+++++.
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~~--------------~~~~~~i~~~~~~~~~~~~~~~~ 238 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGTL--------------RGHENGVNSVAFSPDGYLLASGS 238 (289)
T ss_pred EEEecCCCcEEEEECCCCceecch--------------hhcCCceEEEEEcCCCcEEEEEc
Confidence 999999999999999875544321 12445889999999988888763
No 57
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=3.2e-25 Score=168.86 Aligned_cols=221 Identities=14% Similarity=0.194 Sum_probs=171.1
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++|+.|+++++|+++..+....... .+|.+.+.. +.|+|.. ..++++++.|.
T Consensus 30 ~~g~~lasgs~dktv~v~n~e~~r~~~~~~~--~gh~~svdq---l~w~~~~-----------------~d~~atas~dk 87 (313)
T KOG1407|consen 30 CDGTKLASGSFDKTVSVWNLERDRFRKELVY--RGHTDSVDQ---LCWDPKH-----------------PDLFATASGDK 87 (313)
T ss_pred ccCceeeecccCCceEEEEecchhhhhhhcc--cCCCcchhh---heeCCCC-----------------CcceEEecCCc
Confidence 3455689999999999999988755444433 335555444 8888877 58999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
+|++||+..+++ ........+.|+ +.| +|+|.+++.+..|..|.+.|.++.+.....+
T Consensus 88 ~ir~wd~r~~k~--------------~~~i~~~~eni~-i~w-------sp~g~~~~~~~kdD~it~id~r~~~~~~~~~ 145 (313)
T KOG1407|consen 88 TIRIWDIRSGKC--------------TARIETKGENIN-ITW-------SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ 145 (313)
T ss_pred eEEEEEeccCcE--------------EEEeeccCcceE-EEE-------cCCCCEEEEecCcccEEEEEecccceeehhc
Confidence 999999998664 333433334444 688 8999999999999999999999877666544
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
... .+..++|+ .++++|+..+..|.|.|-.+ . ..+++.++++|.....|+.|+|+|
T Consensus 146 ~~~---------------e~ne~~w~-----~~nd~Fflt~GlG~v~ILsy--p--sLkpv~si~AH~snCicI~f~p~G 201 (313)
T KOG1407|consen 146 FKF---------------EVNEISWN-----NSNDLFFLTNGLGCVEILSY--P--SLKPVQSIKAHPSNCICIEFDPDG 201 (313)
T ss_pred ccc---------------eeeeeeec-----CCCCEEEEecCCceEEEEec--c--ccccccccccCCcceEEEEECCCC
Confidence 322 56778888 66777777777999999743 3 345899999999999999999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++||+|+.|..+.+||+..--+.+... .+.-+|+.++|+.||+|||++.
T Consensus 202 ryfA~GsADAlvSLWD~~ELiC~R~is--------------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 202 RYFATGSADALVSLWDVDELICERCIS--------------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred ceEeeccccceeeccChhHhhhheeec--------------cccCceEEEEeccCcceeeccC
Confidence 999999999999999997643332221 1223899999999999999874
No 58
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=7.1e-26 Score=187.33 Aligned_cols=247 Identities=15% Similarity=0.089 Sum_probs=164.2
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCC-CceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCL-PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+.+...+++||.|.+|+.||+...... +.+..-+ ......+..+.|++.+ ..|++.+.
T Consensus 176 Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~---P~E~h~i~sl~ys~Tg------------------~~iLvvsg 234 (641)
T KOG0772|consen 176 DPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQ---PCETHQINSLQYSVTG------------------DQILVVSG 234 (641)
T ss_pred cCCCceeeeccccceEEEEecccccccchhhhccC---cccccccceeeecCCC------------------CeEEEEec
Confidence 355667899999999999999864321 1111100 0111113347777776 67666666
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-e
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ-K 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~ 171 (318)
....+|+|...-+...-..+.. -..-+...++|...++|.+|+|.. .+.|+|++.||++++||+.+.+.. +
T Consensus 235 ~aqakl~DRdG~~~~e~~KGDQ--YI~Dm~nTKGHia~lt~g~whP~~------k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 235 SAQAKLLDRDGFEIVEFSKGDQ--YIRDMYNTKGHIAELTCGCWHPDN------KEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CcceeEEccCCceeeeeeccch--hhhhhhccCCceeeeeccccccCc------ccceEEecCCCcEEEEecCCchhhee
Confidence 7789999987533211000000 011223457899999999995543 356999999999999999865432 2
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC--ceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ--VVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~--~v~~~~ 249 (318)
.+..... .+..-+++.++|+ ++|++||+|+.||.|.+|+....+-.. ....-.+|.. .|++++
T Consensus 307 Vik~k~~---------~g~Rv~~tsC~~n-----rdg~~iAagc~DGSIQ~W~~~~~~v~p-~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 307 VIKTKPA---------GGKRVPVTSCAWN-----RDGKLIAAGCLDGSIQIWDKGSRTVRP-VMKVKDAHLPGQDITSIS 371 (641)
T ss_pred EEeeccC---------CCcccCceeeecC-----CCcchhhhcccCCceeeeecCCccccc-ceEeeeccCCCCceeEEE
Confidence 3322111 2234478899999 999999999999999999643222221 2222346776 899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCce--eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSL--SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
||++|++|++-+.|+++++||++.-+. ......+... +-+.++|||+.++|++|-
T Consensus 372 FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~-------------~~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 372 FSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPF-------------PGTDCCFSPDDKLILTGT 428 (641)
T ss_pred eccccchhhhccCCCceeeeeccccccchhhhcCCCccC-------------CCCccccCCCceEEEecc
Confidence 999999999999999999999987332 2222222221 447899999999999874
No 59
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=182.79 Aligned_cols=219 Identities=22% Similarity=0.297 Sum_probs=165.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
++...+++|...|-|+++|+.+...+..+.. |... +....|+|.. +..+++|++|+
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~a----h~ap---v~~~~f~~~d-----------------~t~l~s~sDd~ 133 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYA----HQAP---VHVTKFSPQD-----------------NTMLVSGSDDK 133 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhh----ccCc---eeEEEecccC-----------------CeEEEecCCCc
Confidence 3455678888899999999655333333333 2222 2225566655 67888999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc-ceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~ 173 (318)
.+++||+.+.. ....+.+|++.|.|.+| ++.++..++||+.||+|++||++.. ..+.++
T Consensus 134 v~k~~d~s~a~--------------v~~~l~~htDYVR~g~~------~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el 193 (487)
T KOG0310|consen 134 VVKYWDLSTAY--------------VQAELSGHTDYVRCGDI------SPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL 193 (487)
T ss_pred eEEEEEcCCcE--------------EEEEecCCcceeEeecc------ccCCCeEEEecCCCceEEEEEeccCCceeEEe
Confidence 99999999742 34578999999999999 4456679999999999999999976 333333
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
. |..+|..+.+- |.|.++++++ ...|++|| +.++. +.+..+..|...|+|+.+..+
T Consensus 194 n---------------hg~pVe~vl~l-----psgs~iasAg-Gn~vkVWD--l~~G~-qll~~~~~H~KtVTcL~l~s~ 249 (487)
T KOG0310|consen 194 N---------------HGCPVESVLAL-----PSGSLIASAG-GNSVKVWD--LTTGG-QLLTSMFNHNKTVTCLRLASD 249 (487)
T ss_pred c---------------CCCceeeEEEc-----CCCCEEEEcC-CCeEEEEE--ecCCc-eehhhhhcccceEEEEEeecC
Confidence 3 55589999998 8999999988 67799995 54333 255666669999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++.|++++.|+.|++||+.+-+...-..-+ ++|.+++.+||++.++.|
T Consensus 250 ~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---------------~pvLsiavs~dd~t~viG 297 (487)
T KOG0310|consen 250 STRLLSGSLDRHVKVFDTTNYKVVHSWKYP---------------GPVLSIAVSPDDQTVVIG 297 (487)
T ss_pred CceEeecccccceEEEEccceEEEEeeecc---------------cceeeEEecCCCceEEEe
Confidence 999999999999999997665443221112 489999999999888776
No 60
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=1.6e-26 Score=181.24 Aligned_cols=228 Identities=17% Similarity=0.199 Sum_probs=176.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++||.||-+.+||+.+|+..+.+.... ...+.-+..+|.|+.||.+...||+|+.||
T Consensus 223 PDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA-----------------qd~fMMmd~aVlci~FSRDsEMlAsGsqDG 285 (508)
T KOG0275|consen 223 PDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA-----------------QDNFMMMDDAVLCISFSRDSEMLASGSQDG 285 (508)
T ss_pred CCCceEeeccccceeeeehhccchhhhhhhhhh-----------------hcceeecccceEEEeecccHHHhhccCcCC
Confidence 345668999999999999999998766554321 223444556777777777779999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|++|.+++|.|+ +.|. +|...|+|+.| +.++..+++++.|.++++.-+.+|++++.+
T Consensus 286 kIKvWri~tG~Cl--------------RrFdrAHtkGvt~l~F-------SrD~SqiLS~sfD~tvRiHGlKSGK~LKEf 344 (508)
T KOG0275|consen 286 KIKVWRIETGQCL--------------RRFDRAHTKGVTCLSF-------SRDNSQILSASFDQTVRIHGLKSGKCLKEF 344 (508)
T ss_pred cEEEEEEecchHH--------------HHhhhhhccCeeEEEE-------ccCcchhhcccccceEEEeccccchhHHHh
Confidence 9999999998765 4554 89999999999 899999999999999999999999999999
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee---------------------
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF--------------------- 232 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------------- 232 (318)
.+|.. -|+...|. ++|..+++++.||+|++|+ ..+.++
T Consensus 345 rGHsS--------------yvn~a~ft-----~dG~~iisaSsDgtvkvW~--~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 345 RGHSS--------------YVNEATFT-----DDGHHIISASSDGTVKVWH--GKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred cCccc--------------cccceEEc-----CCCCeEEEecCCccEEEec--CcchhhhhhccCCCCcccceeEEEcCC
Confidence 87765 78889998 9999999999999999995 222210
Q ss_pred ---------------------eEeeeee---cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCc
Q 021036 233 ---------------------DKVGSYN---AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGL 288 (318)
Q Consensus 233 ---------------------~~~~~~~---~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 288 (318)
+.+.++. ...+...+...+|.|.++.+.++|+.++.|.+.++.+...
T Consensus 404 npeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t--------- 474 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT--------- 474 (508)
T ss_pred CCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee---------
Confidence 0001111 0123344567899999999999999999999998887642
Q ss_pred cccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 289 QSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 289 ~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+..|...|-+++-+|....||+
T Consensus 475 -----l~VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 475 -----LPVHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred -----eecccccccccccCcccchhhh
Confidence 2334446677777777666654
No 61
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.4e-25 Score=190.28 Aligned_cols=242 Identities=15% Similarity=0.164 Sum_probs=181.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
......+..-++||+.||.|++|++......+.-.. ...++.|..=|.++....+++.|++
T Consensus 30 Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~-------------------~asme~HsDWVNDiiL~~~~~tlIS 90 (735)
T KOG0308|consen 30 LQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPY-------------------IASMEHHSDWVNDIILCGNGKTLIS 90 (735)
T ss_pred ccccCCCCceEEecCCCceEEEeccccccCCcccch-------------------hhhhhhhHhHHhhHHhhcCCCceEE
Confidence 344555566699999999999999876543211110 0022233333444444555689999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE- 168 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~- 168 (318)
++.|-+|++|+...+. .-...++..|.+.|.|+++ ..++..++++|+-|+.|.+||+.++.
T Consensus 91 ~SsDtTVK~W~~~~~~------------~~c~stir~H~DYVkcla~------~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 91 ASSDTTVKVWNAHKDN------------TFCMSTIRTHKDYVKCLAY------IAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred ecCCceEEEeecccCc------------chhHhhhhcccchheeeee------cccCceeEEecCCCccEEEEEccCcch
Confidence 9999999999998753 1245678899999999999 35677899999999999999999873
Q ss_pred -eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 169 -LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
....+..-.. .....++..+|++++.+ +.|..|++|+.++.+++| |.++.+ .+..++||+..|..
T Consensus 153 ~l~~s~n~~t~-----~sl~sG~k~siYSLA~N-----~t~t~ivsGgtek~lr~w--Dprt~~--kimkLrGHTdNVr~ 218 (735)
T KOG0308|consen 153 TLVASFNNVTV-----NSLGSGPKDSIYSLAMN-----QTGTIIVSGGTEKDLRLW--DPRTCK--KIMKLRGHTDNVRV 218 (735)
T ss_pred hhhhhcccccc-----ccCCCCCccceeeeecC-----CcceEEEecCcccceEEe--cccccc--ceeeeeccccceEE
Confidence 3332221110 01122667799999999 999999999999999999 677766 77788999999999
Q ss_pred EEEcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+..++||+.+++++.||+|++||+....+ .++.. |...|+++..+|+=+.+.+|.
T Consensus 219 ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v---------------H~e~VWaL~~~~sf~~vYsG~ 274 (735)
T KOG0308|consen 219 LLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV---------------HKEGVWALQSSPSFTHVYSGG 274 (735)
T ss_pred EEEcCCCCeEeecCCCceEEeeeccccceeeeEEe---------------ccCceEEEeeCCCcceEEecC
Confidence 99999999999999999999999987544 34444 444789999888877777764
No 62
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=3.7e-25 Score=173.15 Aligned_cols=224 Identities=17% Similarity=0.160 Sum_probs=163.0
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCc-----cccccc--c-----ccCCc----------eeEEe--
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPK-----CYSVED--C-----KVPTT----------AVLIG-- 122 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-----~~~~~~--~-----~~~~~----------~~~~~-- 122 (318)
.+.+|..+|++++|+.+|++|++++.|++|+||++++-+ ++++.. . .+..+ +..+.
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vy 160 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVY 160 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEE
Confidence 378999999999999999999999999999999997522 111100 0 00000 00000
Q ss_pred ---------------------eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccc
Q 021036 123 ---------------------LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFS 181 (318)
Q Consensus 123 ---------------------~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~ 181 (318)
--+.|...|-.+-. ..++.+|++++.|..|.+|++. |+.+..+.....
T Consensus 161 k~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi-------A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~--- 229 (420)
T KOG2096|consen 161 KLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI-------AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQS--- 229 (420)
T ss_pred EeeecccCCCCcccccccccccchhcccceEEEee-------cCCceEEEEecCCCcEEEEecC-Cceeeeeccccc---
Confidence 01124445555555 6778999999999999999998 888887765554
Q ss_pred cceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc-CCCee---eEeeeeecccCceeEEEEcCCCCEE
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI-SCNKF---DKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~-~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.-+..+++ |+|+++++++....|++|..-. +.+++ ..+.++++|...|..++|+++.+.+
T Consensus 230 -----------~n~~aavS-----P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~ 293 (420)
T KOG2096|consen 230 -----------SNYDAAVS-----PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRA 293 (420)
T ss_pred -----------cccceeeC-----CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCccee
Confidence 45667888 9999999999999999996422 23332 3456789999999999999999999
Q ss_pred EEecCCCcEEEEEecC----------------------CceeeeecCCCCCCcc--ccccC---------------CCcc
Q 021036 258 YSCSQDNFVRSWIFHG----------------------NSLSQVSIPTNTPGLQ--SCTDL---------------PDAF 298 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~----------------------~~~~~~~~~~~~~~~~--~~~~~---------------~~h~ 298 (318)
++.+.||+++|||+.- +....+...|++..++ ...++ ..|+
T Consensus 294 vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~ 373 (420)
T KOG2096|consen 294 VTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHS 373 (420)
T ss_pred EEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhc
Confidence 9999999999999852 1112444555555444 11111 1689
Q ss_pred eeeeEEEEcCCCcEEEEEe
Q 021036 299 VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 299 ~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.+++|+++|+++|++.
T Consensus 374 ~~Is~is~~~~g~~~atcG 392 (420)
T KOG2096|consen 374 TTISSISYSSDGKYIATCG 392 (420)
T ss_pred CceeeEEecCCCcEEeeec
Confidence 9999999999999999874
No 63
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=3.3e-24 Score=188.92 Aligned_cols=228 Identities=15% Similarity=0.055 Sum_probs=148.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAV 89 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~ 89 (318)
+.+.+...+++|+.|++|++||++++.. ...+.. |...+.+|...|.++.|+|++. +|++
T Consensus 82 fsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~------------------p~~~L~gH~~~V~sVaf~P~g~~iLaS 143 (568)
T PTZ00420 82 FNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD------------------PQCILKGHKKKISIIDWNPMNYYIMCS 143 (568)
T ss_pred EcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc------------------ceEEeecCCCcEEEEEECCCCCeEEEE
Confidence 3444456789999999999999986532 111100 0001223334444444444435 5678
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
++.|+.|+|||+.+++ .+..+. |...|.+++| +++|.+|++++.|+.|+|||+++++.
T Consensus 144 gS~DgtIrIWDl~tg~--------------~~~~i~-~~~~V~Slsw-------spdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 144 SGFDSFVNIWDIENEK--------------RAFQIN-MPKKLSSLKW-------NIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EeCCCeEEEEECCCCc--------------EEEEEe-cCCcEEEEEE-------CCCCCEEEEEecCCEEEEEECCCCcE
Confidence 9999999999999854 333443 5678999999 89999999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC----cEEEeeeccCCCeeeEeeeee--cccC
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG----SFDLWKCDISCNKFDKVGSYN--AHDQ 243 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~--~h~~ 243 (318)
+..+..|..... ...+....|+ +++.+|++++.++ .|+|||++.. .+ ++..+. .+.+
T Consensus 202 i~tl~gH~g~~~---------s~~v~~~~fs-----~d~~~IlTtG~d~~~~R~VkLWDlr~~-~~--pl~~~~ld~~~~ 264 (568)
T PTZ00420 202 ASSFHIHDGGKN---------TKNIWIDGLG-----GDDNYILSTGFSKNNMREMKLWDLKNT-TS--ALVTMSIDNASA 264 (568)
T ss_pred EEEEecccCCce---------eEEEEeeeEc-----CCCCEEEEEEcCCCCccEEEEEECCCC-CC--ceEEEEecCCcc
Confidence 877766653100 0112233445 7888888887664 7999954321 22 333332 2333
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+...-..++|.++++|+.|++|++|++..+.+..+.... +..++.+++|.|+
T Consensus 265 ~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~-------------s~~p~~g~~f~Pk 317 (568)
T PTZ00420 265 PLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYK-------------SCSPFRSFGFLPK 317 (568)
T ss_pred ceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccc-------------cCCCccceEEccc
Confidence 3333333445889999999999999999877554433222 2346677777774
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=171.96 Aligned_cols=233 Identities=18% Similarity=0.210 Sum_probs=157.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+..-++||+.|....+|++.++.....+. +|++. +.++.|+.+ |.+||+|+.+|.
T Consensus 75 ~~~l~aTGGgDD~AflW~~~~ge~~~elt----gHKDS---Vt~~~Fshd------------------gtlLATGdmsG~ 129 (399)
T KOG0296|consen 75 NNNLVATGGGDDLAFLWDISTGEFAGELT----GHKDS---VTCCSFSHD------------------GTLLATGDMSGK 129 (399)
T ss_pred CCceEEecCCCceEEEEEccCCcceeEec----CCCCc---eEEEEEccC------------------ceEEEecCCCcc
Confidence 55667999999999999999987433332 24443 333555555 499999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|+||...++. ....+...-..|.=+.| .|.+..|+.|+.||.+.+|.+.++...+.+.+
T Consensus 130 v~v~~~stg~--------------~~~~~~~e~~dieWl~W-------Hp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 130 VLVFKVSTGG--------------EQWKLDQEVEDIEWLKW-------HPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred EEEEEcccCc--------------eEEEeecccCceEEEEe-------cccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 9999999864 23334333445555777 67888999999999999999998776676666
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee----------------
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN---------------- 239 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------------- 239 (318)
|.. ++++-.|. |+|+.++++..||+|++|+ ..++. ++..+.
T Consensus 189 h~~--------------~ct~G~f~-----pdGKr~~tgy~dgti~~Wn--~ktg~--p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 189 HNS--------------PCTCGEFI-----PDGKRILTGYDDGTIIVWN--PKTGQ--PLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred CCC--------------Cccccccc-----CCCceEEEEecCceEEEEe--cCCCc--eeEEecccccCcCCcccccccc
Confidence 554 78888888 8899999999999999994 44443 222211
Q ss_pred -----------------------------------cccCceeEEEEcC---CCCEEEEecCCCcEEEEEecCCceeeeec
Q 021036 240 -----------------------------------AHDQVVTGLAWAF---DGCCLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 240 -----------------------------------~h~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
.+...+.++.+.| .-.+.|+|+.||+|.|||+....+.....
T Consensus 246 ~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~ 325 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE 325 (399)
T ss_pred ceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheecc
Confidence 1111222333333 23466777888888888876544432222
Q ss_pred CCC---------CCCcc-cc----------------ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTN---------TPGLQ-SC----------------TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~---------~~~~~-~~----------------~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++. ..++. ++ .+..+|...|..++.+|++++++|+.
T Consensus 326 he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s 387 (399)
T KOG0296|consen 326 HEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVS 387 (399)
T ss_pred CCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEec
Confidence 221 12221 11 12348999999999999999999874
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.5e-25 Score=190.71 Aligned_cols=195 Identities=18% Similarity=0.217 Sum_probs=151.9
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
..+.+|..+|+++.||.++ +|+++++|.+||+|++...+|+ +.| .|.+.|+|++| ++.
T Consensus 363 ~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL--------------~~F-~HndfVTcVaF------nPv 420 (712)
T KOG0283|consen 363 CEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECL--------------KVF-SHNDFVTCVAF------NPV 420 (712)
T ss_pred hhhhccchhheecccccCC-eeEeccccccEEeecCCCccee--------------eEE-ecCCeeEEEEe------ccc
Confidence 3478999999999999865 8899999999999999986654 445 59999999999 456
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+.++|++|+-||.|+||++...+...-...+. -|++++|. |+|+..++|+.+|.+++|
T Consensus 421 DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~---------------lITAvcy~-----PdGk~avIGt~~G~C~fY-- 478 (712)
T KOG0283|consen 421 DDRYFISGSLDGKVRLWSISDKKVVDWNDLRD---------------LITAVCYS-----PDGKGAVIGTFNGYCRFY-- 478 (712)
T ss_pred CCCcEeecccccceEEeecCcCeeEeehhhhh---------------hheeEEec-----cCCceEEEEEeccEEEEE--
Confidence 77899999999999999998877666555444 69999999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecc------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCc
Q 021036 226 DISCNKFDKVGSYNAH------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h 297 (318)
+....++..-..+..| ...|+++.|.|. ...+++.+.|..|||||.+...+ ..++...+..
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~----------- 547 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTS----------- 547 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCC-----------
Confidence 5556553322222211 237999999985 34678888999999999976443 3333333221
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
.-...+|+.||++|+++.
T Consensus 548 --SQ~~Asfs~Dgk~IVs~s 565 (712)
T KOG0283|consen 548 --SQISASFSSDGKHIVSAS 565 (712)
T ss_pred --cceeeeEccCCCEEEEee
Confidence 235779999999999874
No 66
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.3e-25 Score=189.54 Aligned_cols=248 Identities=19% Similarity=0.227 Sum_probs=187.6
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhcccccccc---------------ceee-eecccccCCCCcccccccCC
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLH---------------SLAV-AWSPVLRLSSKKYPVPQNGS 80 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~-~w~p~~~~~~~~~~v~~~~~ 80 (318)
.+.++..+..+.+++|+..+.+|+.++.+. |.+...... +..+ +-+....++.|.+++.+++.
T Consensus 384 d~~~~~Sga~~SikiWn~~t~kciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 384 DSILLASGAGESIKIWNRDTLKCIRTITCG-YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred CceeeeecCCCcEEEEEccCcceeEEeccc-cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 344555666789999999999999988763 322111100 0000 01111226689999999999
Q ss_pred CCCccEEEEecCCCcEEEEEccCCccccccccccCCce-eEE-----eeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTA-VLI-----GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+|++..+++|+.|.+|++||..--.. .+.+. +.+ +.+ .-.+.|.|+++ +|+|++|+.+-
T Consensus 463 ~pD~~g~vT~saDktVkfWdf~l~~~-------~~gt~~k~lsl~~~rtL-el~ddvL~v~~-------Spdgk~LaVsL 527 (888)
T KOG0306|consen 463 SPDNKGFVTGSADKTVKFWDFKLVVS-------VPGTQKKVLSLKHTRTL-ELEDDVLCVSV-------SPDGKLLAVSL 527 (888)
T ss_pred cCCCCceEEecCCcEEEEEeEEEEec-------cCcccceeeeeccceEE-eccccEEEEEE-------cCCCcEEEEEe
Confidence 99999999999999999999863110 00001 111 112 23578999999 99999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
-|.+|++|-+++.+..-.+-+|.. ||.++.++ ||+++++||+.|..|++|-+| -+. +
T Consensus 528 LdnTVkVyflDtlKFflsLYGHkL--------------PV~smDIS-----~DSklivTgSADKnVKiWGLd--FGD--C 584 (888)
T KOG0306|consen 528 LDNTVKVYFLDTLKFFLSLYGHKL--------------PVLSMDIS-----PDSKLIVTGSADKNVKIWGLD--FGD--C 584 (888)
T ss_pred ccCeEEEEEecceeeeeeeccccc--------------ceeEEecc-----CCcCeEEeccCCCceEEeccc--cch--h
Confidence 999999999998877766665554 99999999 999999999999999999555 444 4
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
-.++.+|...|.++.|-|...++.+++.|+.|+-||-..-...+ .+.+|...|++++.+|+|.+++
T Consensus 585 HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq--------------~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 585 HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ--------------KLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe--------------eeccchheeeeeEEcCCCCeEE
Confidence 56788999999999999999999999999999999976533221 3455777999999999999999
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
++.
T Consensus 651 s~s 653 (888)
T KOG0306|consen 651 SSS 653 (888)
T ss_pred ecc
Confidence 874
No 67
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=180.57 Aligned_cols=171 Identities=18% Similarity=0.210 Sum_probs=146.1
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
...+-|..|||+|++|++|+.||-|.+|++.+|+.-... ..+....+.-+.++|.|++| +.+.+.|+
T Consensus 213 KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL------kYQAqd~fMMmd~aVlci~F-------SRDsEMlA 279 (508)
T KOG0275|consen 213 KSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL------KYQAQDNFMMMDDAVLCISF-------SRDSEMLA 279 (508)
T ss_pred ccchhheeeCCCCceEeeccccceeeeehhccchhhhhh------hhhhhcceeecccceEEEee-------cccHHHhh
Confidence 446778889999999999999999999999987632100 01112334567899999999 89999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+|+.||.|++|.+++|.++..+. .+|...|+++.|+ .|+..+++++.|.++++- .+..++
T Consensus 280 sGsqDGkIKvWri~tG~ClRrFd-------------rAHtkGvt~l~FS-----rD~SqiLS~sfD~tvRiH--GlKSGK 339 (508)
T KOG0275|consen 280 SGSQDGKIKVWRIETGQCLRRFD-------------RAHTKGVTCLSFS-----RDNSQILSASFDQTVRIH--GLKSGK 339 (508)
T ss_pred ccCcCCcEEEEEEecchHHHHhh-------------hhhccCeeEEEEc-----cCcchhhcccccceEEEe--ccccch
Confidence 99999999999999999988776 3455699999999 999999999999999998 677887
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+.++++|...|+.+.|.++|+.+++++.||+|++|+.++..+.
T Consensus 340 --~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 340 --CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL 383 (508)
T ss_pred --hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhh
Confidence 78899999999999999999999999999999999999875543
No 68
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4.8e-24 Score=187.92 Aligned_cols=206 Identities=15% Similarity=0.123 Sum_probs=145.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCCcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSGKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~i 98 (318)
.++++.+....+|++..+.....+........ .+...+.+|..+|.+++|+|+ +++|++|+.||+|+|
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~-----------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrI 101 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRK-----------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRV 101 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCC-----------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEE
Confidence 35556666666777665554333332111100 011234566777777777775 689999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE-EEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL-LVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
|++.++.... .....++..+.+|...|.+++| +|++.. |++++.|++|++||+++++....+.
T Consensus 102 WDi~t~~~~~------~~i~~p~~~L~gH~~~V~sVaf-------~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--- 165 (568)
T PTZ00420 102 WEIPHNDESV------KEIKDPQCILKGHKKKISIIDW-------NPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--- 165 (568)
T ss_pred EECCCCCccc------cccccceEEeecCCCcEEEEEE-------CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe---
Confidence 9997642100 0001234567899999999999 776654 5789999999999999887655443
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE-----EEEcC
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG-----LAWAF 252 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-----~~~~~ 252 (318)
+...|.+++|+ |+|.+|++++.|+.|++| |.++++ .+.++.+|.+.+.. ..|++
T Consensus 166 ------------~~~~V~Slsws-----pdG~lLat~s~D~~IrIw--D~Rsg~--~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 166 ------------MPKKLSSLKWN-----IKGNLLSGTCVGKHMHII--DPRKQE--IASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred ------------cCCcEEEEEEC-----CCCCEEEEEecCCEEEEE--ECCCCc--EEEEEecccCCceeEEEEeeeEcC
Confidence 12378999999 999999999999999999 666766 56778889876543 23568
Q ss_pred CCCEEEEecCCC----cEEEEEecC
Q 021036 253 DGCCLYSCSQDN----FVRSWIFHG 273 (318)
Q Consensus 253 ~~~~l~s~~~d~----~v~iwd~~~ 273 (318)
++.+|++++.|+ +|+|||++.
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCC
Confidence 888999887774 799999985
No 69
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=185.09 Aligned_cols=229 Identities=21% Similarity=0.235 Sum_probs=179.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-.++.+....+.+|+..+++..+..... .+ .++.+.|++++ .+|++|..+|.|.
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~----~~---~vtSv~ws~~G------------------~~LavG~~~g~v~ 242 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG----EE---LVTSVKWSPDG------------------SHLAVGTSDGTVQ 242 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC----CC---ceEEEEECCCC------------------CEEEEeecCCeEE
Confidence 33566677778999999988754444331 22 25568888888 9999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee-ecc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS-AEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~~~ 175 (318)
|||..+. +.++.+.+ |...|-+++| . +..+.+|+.|+.|..+|++..+.... +
T Consensus 243 iwD~~~~--------------k~~~~~~~~h~~rvg~laW-------~--~~~lssGsr~~~I~~~dvR~~~~~~~~~-- 297 (484)
T KOG0305|consen 243 IWDVKEQ--------------KKTRTLRGSHASRVGSLAW-------N--SSVLSSGSRDGKILNHDVRISQHVVSTL-- 297 (484)
T ss_pred EEehhhc--------------cccccccCCcCceeEEEec-------c--CceEEEecCCCcEEEEEEecchhhhhhh--
Confidence 9999874 45567777 9999999999 4 66799999999999999998765443 3
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-C
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-G 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~ 254 (318)
.+|...|..+.|+ +++.+||+|+.|+.+.||| ..... +...+..|.+.|.+++|+|- .
T Consensus 298 ------------~~H~qeVCgLkws-----~d~~~lASGgnDN~~~Iwd--~~~~~--p~~~~~~H~aAVKA~awcP~q~ 356 (484)
T KOG0305|consen 298 ------------QGHRQEVCGLKWS-----PDGNQLASGGNDNVVFIWD--GLSPE--PKFTFTEHTAAVKALAWCPWQS 356 (484)
T ss_pred ------------hcccceeeeeEEC-----CCCCeeccCCCccceEecc--CCCcc--ccEEEeccceeeeEeeeCCCcc
Confidence 3455589999999 9999999999999999994 44433 77788999999999999994 5
Q ss_pred CEEEEe--cCCCcEEEEEecCCcee----------eeecCCCCCCcc---c----------------cccCCCcceeeeE
Q 021036 255 CCLYSC--SQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQ---S----------------CTDLPDAFVSCLG 303 (318)
Q Consensus 255 ~~l~s~--~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~---~----------------~~~~~~h~~~v~~ 303 (318)
..||+| +.|+.|++||..++... .+.+.+....+. | ...+.+|..+|..
T Consensus 357 ~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 357 GLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLY 436 (484)
T ss_pred CceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEE
Confidence 688887 47999999999875543 333444333332 1 1335699999999
Q ss_pred EEEcCCCcEEEEEe
Q 021036 304 MAVSPGNLVVAMVQ 317 (318)
Q Consensus 304 v~~sp~~~~l~~~~ 317 (318)
++++|||..+++|-
T Consensus 437 la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 437 LALSPDGETIVTGA 450 (484)
T ss_pred EEECCCCCEEEEec
Confidence 99999999999974
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=181.47 Aligned_cols=239 Identities=13% Similarity=0.116 Sum_probs=176.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+...+++|+.|..|++|++..+++.. + +.+.+..++++++++.++++.+++.+.|+.
T Consensus 186 ~sdtlatgg~Dr~Ik~W~v~~~k~~~-~----------------------~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 186 NSDTLATGGSDRIIKLWNVLGEKSEL-I----------------------STLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred Ccchhhhcchhhhhhhhhcccchhhh-h----------------------hhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 34567999999999999987766211 1 123344466777777777799999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+++|++.. .+...++.+|.+.|+++.| ......+++|+.|.++++||+....+.+++..
T Consensus 243 ~r~Wnvd~--------------~r~~~TLsGHtdkVt~ak~-------~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~ 301 (459)
T KOG0288|consen 243 LRLWNVDS--------------LRLRHTLSGHTDKVTAAKF-------KLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP 301 (459)
T ss_pred eeeeeccc--------------hhhhhhhcccccceeeehh-------hccccceeeccccchhhhhhhhhhheeccccc
Confidence 99999998 4567889999999999999 55555599999999999999998776655332
Q ss_pred cccccccce------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 176 HCVPFSLLK------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 176 ~~~~~~~~~------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
......... .....-.+.|+++..+ +++..+++++.|.++.+. |.++..
T Consensus 302 ~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls-----~~g~~lLsssRDdtl~vi--DlRt~e 374 (459)
T KOG0288|consen 302 GSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLS-----MDGLELLSSSRDDTLKVI--DLRTKE 374 (459)
T ss_pred cccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeec-----cCCeEEeeecCCCceeee--eccccc
Confidence 211111100 1111234478999998 899999999999999998 666665
Q ss_pred eeEeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 232 FDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 232 ~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.....+-.+ .....+.+.|||++.|+++||.||.|+||++.++++....-.+..+ ..|++++|+|.
T Consensus 375 I~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~------------~aI~s~~W~~s 442 (459)
T KOG0288|consen 375 IRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSN------------AAITSLSWNPS 442 (459)
T ss_pred EEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCC------------cceEEEEEcCC
Confidence 333322222 1234789999999999999999999999999998887543332211 27999999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|..|+++.
T Consensus 443 G~~Llsad 450 (459)
T KOG0288|consen 443 GSGLLSAD 450 (459)
T ss_pred Cchhhccc
Confidence 99988764
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-23 Score=164.07 Aligned_cols=232 Identities=12% Similarity=0.137 Sum_probs=173.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--CCc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--SGK 95 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--dg~ 95 (318)
..++++++|.+++++|..+++++..+..+.|+... +.|-... +.++.++. |.+
T Consensus 27 ~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~-------~~Fth~~------------------~~~i~sStk~d~t 81 (311)
T KOG1446|consen 27 LLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDL-------ACFTHHS------------------NTVIHSSTKEDDT 81 (311)
T ss_pred CEEEEecCCCeEEEEEcCCCceeeEeecccccccE-------EEEecCC------------------ceEEEccCCCCCc
Confidence 34577899999999999999999998887665433 3333333 44444444 889
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
||.-++.++ +.++.+.||...|++|+. +|.++.+++++.|++|++||++..++...+..
T Consensus 82 IryLsl~dN--------------kylRYF~GH~~~V~sL~~-------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 82 IRYLSLHDN--------------KYLRYFPGHKKRVNSLSV-------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred eEEEEeecC--------------ceEEEcCCCCceEEEEEe-------cCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 999999984 577899999999999999 88889999999999999999997666554433
Q ss_pred cccccccce-------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 176 HCVPFSLLK-------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 176 ~~~~~~~~~-------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
...|..... .+........+.|.|+ |+|+.++.+...+.+++.
T Consensus 141 ~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS-----~dGK~iLlsT~~s~~~~l- 214 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFS-----PDGKSILLSTNASFIYLL- 214 (311)
T ss_pred CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEc-----CCCCEEEEEeCCCcEEEE-
Confidence 222111100 0111234567888898 999999999999999997
Q ss_pred eccCCCeeeEeeeeecccCce---eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 225 CDISCNKFDKVGSYNAHDQVV---TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
|.-++. ...++.++...- -...|+||++++++|+.||+|.+|+++++........+ +.+++
T Consensus 215 -DAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-------------~~~~~ 278 (311)
T KOG1446|consen 215 -DAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-------------NGGPV 278 (311)
T ss_pred -EccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-------------CCCCc
Confidence 666776 555666554322 46789999999999999999999999887765443332 23478
Q ss_pred eEEEEcCCCcEEEEEe
Q 021036 302 LGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~~ 317 (318)
.++.|+|.-.+++++.
T Consensus 279 ~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 279 SCVRFNPRYAMFVSAS 294 (311)
T ss_pred cccccCCceeeeeecC
Confidence 8999999988888763
No 72
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=7.2e-25 Score=191.15 Aligned_cols=207 Identities=20% Similarity=0.268 Sum_probs=159.4
Q ss_pred CC-CCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccc-----------------------c------------
Q 021036 68 LS-SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVE-----------------------D------------ 111 (318)
Q Consensus 68 ~~-~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~-----------------------~------------ 111 (318)
++ .|.++|.++.||++|+|||+|+.||.|+||.+...+....+ .
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 44 79999999999999999999999999999998762211100 0
Q ss_pred -----------cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccc
Q 021036 112 -----------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF 180 (318)
Q Consensus 112 -----------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~ 180 (318)
..+.-..++++.+.+|.+.|.+|.| +.++ +|++++.|.+|+||++...+++..|.
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSW-------SKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~------ 407 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSW-------SKNN-FLLSSSMDKTVRLWHPGRKECLKVFS------ 407 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheeccc-------ccCC-eeEeccccccEEeecCCCcceeeEEe------
Confidence 0011124567788999999999999 6655 99999999999999999999998876
Q ss_pred ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 181 SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 181 ~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
|..-|+|++|+ |-|.++|++|+-||+++|| ++...+ +..+..-..-|++++|.|+|++.+.|
T Consensus 408 ---------HndfVTcVaFn----PvDDryFiSGSLD~KvRiW--sI~d~~---Vv~W~Dl~~lITAvcy~PdGk~avIG 469 (712)
T KOG0283|consen 408 ---------HNDFVTCVAFN----PVDDRYFISGSLDGKVRLW--SISDKK---VVDWNDLRDLITAVCYSPDGKGAVIG 469 (712)
T ss_pred ---------cCCeeEEEEec----ccCCCcEeecccccceEEe--ecCcCe---eEeehhhhhhheeEEeccCCceEEEE
Confidence 45589999999 5788999999999999999 555543 44444455789999999999999999
Q ss_pred cCCCcEEEEEecCCceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCc--EEEE
Q 021036 261 SQDNFVRSWIFHGNSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL--VVAM 315 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~--~l~~ 315 (318)
+.+|.+++|++...++.. +..+... -..|. .|+++.|.|... +|+|
T Consensus 470 t~~G~C~fY~t~~lk~~~~~~I~~~~~K--------k~~~~-rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 470 TFNGYCRFYDTEGLKLVSDFHIRLHNKK--------KKQGK-RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred EeccEEEEEEccCCeEEEeeeEeeccCc--------cccCc-eeeeeEecCCCCCeEEEe
Confidence 999999999998755532 2222111 11233 899999998433 5555
No 73
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=169.42 Aligned_cols=256 Identities=18% Similarity=0.188 Sum_probs=183.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-CCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-LSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.+...++|||.|..|+|.|++..--.. ...+....+. -+-+|.-| +..|..+|++++|.|...+|++|+.|
T Consensus 122 ~DG~lvATGsaD~SIKildvermlaks--~~~em~~~~~------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD 193 (430)
T KOG0640|consen 122 PDGSLVATGSADASIKILDVERMLAKS--KPKEMISGDT------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRD 193 (430)
T ss_pred CCCcEEEccCCcceEEEeehhhhhhhc--chhhhccCCc------ccCCceEeehhhccCcccceeecchhheEEeccCC
Confidence 345557999999999999998421100 0000000000 11123323 55688889999999999999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++|+++|+...... +..+.+ ....+|.++.| .|.|++|+.|....++++||+.+-++...-
T Consensus 194 ~tvKlFDfsK~saK-----------rA~K~~-qd~~~vrsiSf-------HPsGefllvgTdHp~~rlYdv~T~Qcfvsa 254 (430)
T KOG0640|consen 194 NTVKLFDFSKTSAK-----------RAFKVF-QDTEPVRSISF-------HPSGEFLLVGTDHPTLRLYDVNTYQCFVSA 254 (430)
T ss_pred CeEEEEecccHHHH-----------HHHHHh-hccceeeeEee-------cCCCceEEEecCCCceeEEeccceeEeeec
Confidence 99999999864321 112222 23568999999 899999999999999999999998877654
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-ccc-CceeEEEEc
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-AHD-QVVTGLAWA 251 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~h~-~~v~~~~~~ 251 (318)
... ..|...|+++.++ +.+++.++++.||.|++| |--..+ ++.++. +|. ..|.+..|.
T Consensus 255 nPd-----------~qht~ai~~V~Ys-----~t~~lYvTaSkDG~Iklw--DGVS~r--Cv~t~~~AH~gsevcSa~Ft 314 (430)
T KOG0640|consen 255 NPD-----------DQHTGAITQVRYS-----STGSLYVTASKDGAIKLW--DGVSNR--CVRTIGNAHGGSEVCSAVFT 314 (430)
T ss_pred Ccc-----------cccccceeEEEec-----CCccEEEEeccCCcEEee--ccccHH--HHHHHHhhcCCceeeeEEEc
Confidence 422 3477899999999 999999999999999999 444444 555553 465 468999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCceeeeecCC----------------CCCCc--------c-ccccC----------CC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT----------------NTPGL--------Q-SCTDL----------PD 296 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~----------------~~~~~--------~-~~~~~----------~~ 296 (318)
.+|+++++.+.|..+++|.+.++......... ...++ . ++++. .+
T Consensus 315 kn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg 394 (430)
T KOG0640|consen 315 KNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG 394 (430)
T ss_pred cCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC
Confidence 99999999999999999999876543221110 00000 0 12221 28
Q ss_pred cceeeeEEEEcCCCcEEEEEe
Q 021036 297 AFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+.++.+.-+|.+.-+.+|.
T Consensus 395 Hn~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 395 HNGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred CCCCceEEEeCCCCCceeeec
Confidence 999999999999988887775
No 74
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=7.2e-25 Score=170.98 Aligned_cols=210 Identities=15% Similarity=0.203 Sum_probs=161.6
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC----ccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP----KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
+..|..++.+.+|+++|.++|+|+.|.+|+|.|++.. +......+........++++-.|.++|+++.|
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F------- 180 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF------- 180 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee-------
Confidence 5679999999999999999999999999999999731 11111122222223578889999999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
.|....|++|+.|++|+++|+......+.++.-+. ..+|.++.|+ |.|+++++|.....+++|
T Consensus 181 HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd------------~~~vrsiSfH-----PsGefllvgTdHp~~rlY 243 (430)
T KOG0640|consen 181 HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD------------TEPVRSISFH-----PSGEFLLVGTDHPTLRLY 243 (430)
T ss_pred cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc------------cceeeeEeec-----CCCceEEEecCCCceeEE
Confidence 78888999999999999999986544443333221 2389999999 999999999999999999
Q ss_pred eeccCCCeeeEe-eeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceee
Q 021036 224 KCDISCNKFDKV-GSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 224 ~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
| +.+.++-.. .--.+|.+.|+++.+++.|++.++++.||.|+|||--++.+. .+.....+ ..|
T Consensus 244 d--v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~g-------------sev 308 (430)
T KOG0640|consen 244 D--VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGG-------------SEV 308 (430)
T ss_pred e--ccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCC-------------cee
Confidence 5 445442111 122469999999999999999999999999999996654443 33322222 378
Q ss_pred eEEEEcCCCcEEEEE
Q 021036 302 LGMAVSPGNLVVAMV 316 (318)
Q Consensus 302 ~~v~~sp~~~~l~~~ 316 (318)
.+..|..+|+||++.
T Consensus 309 cSa~Ftkn~kyiLsS 323 (430)
T KOG0640|consen 309 CSAVFTKNGKYILSS 323 (430)
T ss_pred eeEEEccCCeEEeec
Confidence 999999999999874
No 75
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=2.6e-25 Score=168.44 Aligned_cols=218 Identities=17% Similarity=0.175 Sum_probs=174.9
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.|.-..++++.|-+.++||.-++..+..+. |+.. +..++|+.+. ++|++|+.+.
T Consensus 69 ~na~~aasaaadftakvw~a~tgdelhsf~-----hkhi---vk~~af~~ds------------------~~lltgg~ek 122 (334)
T KOG0278|consen 69 KNATRAASAAADFTAKVWDAVTGDELHSFE-----HKHI---VKAVAFSQDS------------------NYLLTGGQEK 122 (334)
T ss_pred chhhhhhhhcccchhhhhhhhhhhhhhhhh-----hhhe---eeeEEecccc------------------hhhhccchHH
Confidence 344556888899999999998887655543 4444 2336666666 9999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+||||++..+. +...+.+|.+.|..+.| ....+.|++++.|++||+||.++++.++.+.
T Consensus 123 llrvfdln~p~A-------------pp~E~~ghtg~Ir~v~w-------c~eD~~iLSSadd~tVRLWD~rTgt~v~sL~ 182 (334)
T KOG0278|consen 123 LLRVFDLNRPKA-------------PPKEISGHTGGIRTVLW-------CHEDKCILSSADDKTVRLWDHRTGTEVQSLE 182 (334)
T ss_pred HhhhhhccCCCC-------------CchhhcCCCCcceeEEE-------eccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence 999999998653 45678999999999999 7777889999999999999999999998876
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
... +|+++.++ ++|+++.++. .+.|.+| |..+-. ++..++ -...|.+...+|+.
T Consensus 183 ~~s---------------~VtSlEvs-----~dG~ilTia~-gssV~Fw--daksf~--~lKs~k-~P~nV~SASL~P~k 236 (334)
T KOG0278|consen 183 FNS---------------PVTSLEVS-----QDGRILTIAY-GSSVKFW--DAKSFG--LLKSYK-MPCNVESASLHPKK 236 (334)
T ss_pred cCC---------------CCcceeec-----cCCCEEEEec-CceeEEe--cccccc--ceeecc-CccccccccccCCC
Confidence 544 78999999 8998877765 6789999 544433 454444 34568899999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++++|++|..++.||..++...... ..+|.++|-+|.|+|||..-|+|.
T Consensus 237 ~~fVaGged~~~~kfDy~TgeEi~~~-------------nkgh~gpVhcVrFSPdGE~yAsGS 286 (334)
T KOG0278|consen 237 EFFVAGGEDFKVYKFDYNTGEEIGSY-------------NKGHFGPVHCVRFSPDGELYASGS 286 (334)
T ss_pred ceEEecCcceEEEEEeccCCceeeec-------------ccCCCCceEEEEECCCCceeeccC
Confidence 99999999999999999998766431 134778999999999999998874
No 76
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5e-25 Score=174.99 Aligned_cols=238 Identities=12% Similarity=0.088 Sum_probs=168.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccc--------------eeeeecccc---cCCCCcccccccCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHS--------------LAVAWSPVL---RLSSKKYPVPQNGS 80 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~w~p~~---~~~~~~~~v~~~~~ 80 (318)
..+++||.||.|+|||+.+..|...+.++ .+.+-.. +.-.|.-.+ +..-....+.+++.
T Consensus 80 s~~aSGs~DG~VkiWnlsqR~~~~~f~AH----~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh 155 (433)
T KOG0268|consen 80 STVASGSCDGEVKIWNLSQRECIRTFKAH----EGLVRGICVTQTSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDH 155 (433)
T ss_pred hhhhccccCceEEEEehhhhhhhheeecc----cCceeeEEecccceEEecCCcceeeeeccCCcceeeecccccccccc
Confidence 34789999999999999998887776653 2221110 000121111 00001122333333
Q ss_pred CCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
......++|+|. .|-|||.+. ..+++.+..-.+.|.++.| ++-....|++|+.|+.|.
T Consensus 156 ~~~~~~FaTcGe--~i~IWD~~R--------------~~Pv~smswG~Dti~svkf------NpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 156 HRKNSVFATCGE--QIDIWDEQR--------------DNPVSSMSWGADSISSVKF------NPVETSILASCASDRSIV 213 (433)
T ss_pred ccccccccccCc--eeeeccccc--------------CCccceeecCCCceeEEec------CCCcchheeeeccCCceE
Confidence 333444444432 244444433 2355666666778899999 233446788888999999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
+||+++++.++.+.... .-+.|+|+ |++..|.+|+.|..++.| |++... .++...++
T Consensus 214 LyD~R~~~Pl~KVi~~m---------------RTN~Iswn-----PeafnF~~a~ED~nlY~~--DmR~l~-~p~~v~~d 270 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTM---------------RTNTICWN-----PEAFNFVAANEDHNLYTY--DMRNLS-RPLNVHKD 270 (433)
T ss_pred EEecccCCccceeeeec---------------cccceecC-----ccccceeeccccccceeh--hhhhhc-ccchhhcc
Confidence 99999998877654322 34678999 899999999999999999 666554 37788899
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|...|.+++|+|.|+-|++||.|.+|+||.++.+....+....... .|.+|.||.|.+|+++|.
T Consensus 271 hvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq-------------~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQ-------------HVFCVKYSMDSKYIISGS 334 (433)
T ss_pred cceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhh-------------eeeEEEEeccccEEEecC
Confidence 9999999999999999999999999999999987777666655554 899999999999999984
No 77
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=1.8e-23 Score=159.36 Aligned_cols=218 Identities=20% Similarity=0.205 Sum_probs=172.7
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
..+.+...+++++.|++|++||+..+++...+... ..... +.|+|++ ++++.+.
T Consensus 72 w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~-----~eni~---i~wsp~g------------------~~~~~~~ 125 (313)
T KOG1407|consen 72 WDPKHPDLFATASGDKTIRIWDIRSGKCTARIETK-----GENIN---ITWSPDG------------------EYIAVGN 125 (313)
T ss_pred eCCCCCcceEEecCCceEEEEEeccCcEEEEeecc-----CcceE---EEEcCCC------------------CEEEEec
Confidence 44556677899999999999999999987776542 22222 8999998 9999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.|..|.+.|.++.+ ..... ...-.++-++| ...+++|+....-|+|.|......+.+.
T Consensus 126 kdD~it~id~r~~~--------------~~~~~-~~~~e~ne~~w-------~~~nd~Fflt~GlG~v~ILsypsLkpv~ 183 (313)
T KOG1407|consen 126 KDDRITFIDARTYK--------------IVNEE-QFKFEVNEISW-------NNSNDLFFLTNGLGCVEILSYPSLKPVQ 183 (313)
T ss_pred CcccEEEEEecccc--------------eeehh-cccceeeeeee-------cCCCCEEEEecCCceEEEEecccccccc
Confidence 99999999998743 22222 23456788999 5666777777777999999998888888
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.++.|.. ...|+.|+ |+|++||+|+.|-.+.+||+ ...- ++..+..+.-+|..+.|+
T Consensus 184 si~AH~s--------------nCicI~f~-----p~GryfA~GsADAlvSLWD~--~ELi--C~R~isRldwpVRTlSFS 240 (313)
T KOG1407|consen 184 SIKAHPS--------------NCICIEFD-----PDGRYFATGSADALVSLWDV--DELI--CERCISRLDWPVRTLSFS 240 (313)
T ss_pred ccccCCc--------------ceEEEEEC-----CCCceEeeccccceeeccCh--hHhh--hheeeccccCceEEEEec
Confidence 7776653 66778888 99999999999999999954 3333 566778899999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+|++||++++|..|-|=++.+|.. .+++ +.++...|+|+|...+||-+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~----------------~~~~t~tVAWHPk~~LLAyA 290 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP----------------CEGPTFTVAWHPKRPLLAYA 290 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee----------------ccCCceeEEecCCCceeeEE
Confidence 9999999999999999988888654 4443 23467899999998888754
No 78
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.92 E-value=8.7e-24 Score=168.06 Aligned_cols=168 Identities=20% Similarity=0.253 Sum_probs=146.8
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+..|..+|+++..+|+.+++++|+.|..-.+|++.+++ ....+.+|.+.|+++.| +.+
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge--------------~~~eltgHKDSVt~~~F-------shd 117 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE--------------FAGELTGHKDSVTCCSF-------SHD 117 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------ceeEecCCCCceEEEEE-------ccC
Confidence 366788888888888888999999999999999999864 56788999999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
|.+|+||+.+|.|+||+..++.....+..... .+.-+.|+ |.+..|+.|+.||.+-+|.++
T Consensus 118 gtlLATGdmsG~v~v~~~stg~~~~~~~~e~~--------------dieWl~WH-----p~a~illAG~~DGsvWmw~ip 178 (399)
T KOG0296|consen 118 GTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE--------------DIEWLKWH-----PRAHILLAGSTDGSVWMWQIP 178 (399)
T ss_pred ceEEEecCCCccEEEEEcccCceEEEeecccC--------------ceEEEEec-----ccccEEEeecCCCcEEEEECC
Confidence 99999999999999999999988777652222 56778888 899999999999999999544
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+. ..+.+.+|..++++=.|.|+|+.++++..||+|++|++.++....
T Consensus 179 --~~~--~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~ 226 (399)
T KOG0296|consen 179 --SQA--LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLH 226 (399)
T ss_pred --Ccc--eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeE
Confidence 433 566788999999999999999999999999999999999986554
No 79
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.1e-24 Score=168.04 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=158.1
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+.++|.|.+.+||.+++++|+..... |.+.|.++.|++++.++++++.|++..|
T Consensus 162 i~gtASADhTA~iWs~Esg~CL~~Y~G-------------------------H~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 162 ICGTASADHTARIWSLESGACLATYTG-------------------------HTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred ceeecccccceeEEeeccccceeeecc-------------------------cccceeeEEeccccceEEEccCCcchHH
Confidence 567899999999999999998666543 3344444445555599999999999999
Q ss_pred EEccC----Cc--ccc-------cc----c---------cccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 99 WRICV----PK--CYS-------VE----D---------CKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 99 w~~~~----~~--~~~-------~~----~---------~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
|...- ++ ... .+ + ...+.-..++..+.+|.+.|.+..| -..|+.+++
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW-------L~gg~Q~vT 289 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW-------LAGGQQMVT 289 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh-------hcCcceeee
Confidence 97421 11 000 00 0 1111223567788999999999999 899999999
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
++.|.+..+||+++++.++.+.+|.. ..+.++-+ |..+++++.+.|.+.++||+ + ...
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~--------------ELtHcstH-----ptQrLVvTsSrDtTFRLWDF--R-eaI 347 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDS--------------ELTHCSTH-----PTQRLVVTSSRDTTFRLWDF--R-EAI 347 (481)
T ss_pred eeccccceeeeeccCceeccccCcch--------------hccccccC-----CcceEEEEeccCceeEeccc--h-hhc
Confidence 99999999999999999988877665 77788888 99999999999999999954 4 233
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+..|++|...|+++.|..+. .+++|+.|.+|++||+++
T Consensus 348 ~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 348 QSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred ceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeecc
Confidence 4678899999999999998876 589999999999999987
No 80
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=6.7e-24 Score=173.08 Aligned_cols=206 Identities=16% Similarity=0.264 Sum_probs=153.7
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCC-ceecch--hccccccccceeeeecccccCCCCcccccccCCCCCccEEE
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLP-LITADQ--YASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA 88 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~ 88 (318)
+.......+++++.|+++.+||+....... .+.... .+|.+.+.. ++|+|.. ..+++
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeD---V~~h~~h-----------------~~lF~ 244 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVED---VAWHPLH-----------------EDLFG 244 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceeh---hhccccc-----------------hhhhe
Confidence 334445668999999999999998754321 111111 124444333 6666655 68999
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+++.|+.+.|||.+++. .+......+|.++|+|++|+|+ ++..|||||.|++|.+||+|+..
T Consensus 245 sv~dd~~L~iwD~R~~~------------~~~~~~~~ah~~~vn~~~fnp~------~~~ilAT~S~D~tV~LwDlRnL~ 306 (422)
T KOG0264|consen 245 SVGDDGKLMIWDTRSNT------------SKPSHSVKAHSAEVNCVAFNPF------NEFILATGSADKTVALWDLRNLN 306 (422)
T ss_pred eecCCCeEEEEEcCCCC------------CCCcccccccCCceeEEEeCCC------CCceEEeccCCCcEEEeechhcc
Confidence 99999999999999632 3455677899999999999443 45689999999999999999864
Q ss_pred -eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC----------CeeeEeee
Q 021036 169 -LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC----------NKFDKVGS 237 (318)
Q Consensus 169 -~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----------~~~~~~~~ 237 (318)
++.++..| ...|..+.|+ |.....||+++.|+.+.+||+..-. +..+++..
T Consensus 307 ~~lh~~e~H--------------~dev~~V~WS----Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~ 368 (422)
T KOG0264|consen 307 KPLHTFEGH--------------EDEVFQVEWS----PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFI 368 (422)
T ss_pred cCceeccCC--------------CcceEEEEeC----CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEE
Confidence 44555544 4589999999 3456799999999999999864322 22344555
Q ss_pred eecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC
Q 021036 238 YNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~ 273 (318)
-.||...|..+.|+|... .|++.++|+.+.||++..
T Consensus 369 HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 369 HGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 678999999999999876 678899999999999864
No 81
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=2.2e-23 Score=186.41 Aligned_cols=247 Identities=17% Similarity=0.099 Sum_probs=174.4
Q ss_pred ccceEEee--CCCceeEeecCCC-CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAAS--KSKGNSITKIPSN-CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s--~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...++||+ .|++++||+.+.- .+.......- ++ +......|.+.|.|+.|+++|++||+|++|
T Consensus 25 g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l--~k------------~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 25 GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENL--PK------------HLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred ceeEecCCccccccceeeccccccchhhhhhccc--ch------------hheeeccccCceeEEEECCCCCeEeeccCc
Confidence 34468888 8999999976541 1111111000 00 011233466777777777777999999999
Q ss_pred CcEEEEEccCC----ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 94 GKVSLWRICVP----KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 94 g~i~iw~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
+.|.||..... .+-........+..+....+.+|...|..++| +|++.+|++++.|++|.+|+..+.+.
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W-------sp~~~~lvS~s~DnsViiwn~~tF~~ 163 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW-------SPDDSLLVSVSLDNSVIIWNAKTFEL 163 (942)
T ss_pred ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceecc-------CCCccEEEEecccceEEEEcccccee
Confidence 99999999841 00000001122334677889999999999999 89999999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc----------------------
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI---------------------- 227 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~---------------------- 227 (318)
...+.+|.. .|-.+.|+ |-|++||+-+.|++|++|...-
T Consensus 164 ~~vl~~H~s--------------~VKGvs~D-----P~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~R 224 (942)
T KOG0973|consen 164 LKVLRGHQS--------------LVKGVSWD-----PIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLR 224 (942)
T ss_pred eeeeecccc--------------cccceEEC-----CccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeee
Confidence 887776654 88899999 9999999999999999997210
Q ss_pred --------------------------CCCeeeEeeeeecccCceeEEEEcCC-----CC------------EEEEecCCC
Q 021036 228 --------------------------SCNKFDKVGSYNAHDQVVTGLAWAFD-----GC------------CLYSCSQDN 264 (318)
Q Consensus 228 --------------------------~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~------------~l~s~~~d~ 264 (318)
+.+.|..-..+-||.+++.++.|+|. .. .+|+|+.|+
T Consensus 225 lSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 225 LSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDR 304 (942)
T ss_pred cccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCc
Confidence 01122222345689999999999982 11 578999999
Q ss_pred cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 265 FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.||........-+..+-.. ..|..++|+|||..|..+
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~-------------~SI~DmsWspdG~~Lfac 343 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFN-------------KSIVDMSWSPDGFSLFAC 343 (942)
T ss_pred cEEEEecCCCCchhhhhhhhc-------------CceeeeeEcCCCCeEEEE
Confidence 999999855443333222222 388999999999877665
No 82
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=4.6e-24 Score=163.16 Aligned_cols=218 Identities=18% Similarity=0.291 Sum_probs=161.0
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecch------hcccccc-c-------------cceeee--------ecccc
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQ------YASRSAM-L-------------HSLAVA--------WSPVL 66 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~-~-------------~~~~~~--------w~p~~ 66 (318)
.....++|||.|.++++||+++|+++..+.... +...+.. + .+..+. =.|..
T Consensus 62 ~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~ 141 (327)
T KOG0643|consen 62 WDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYL 141 (327)
T ss_pred CCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceE
Confidence 345668999999999999999999877654321 1111110 0 000000 01111
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+.-+...++..-+++.+++|++|..||.|.+||.+++. +.+..-+.|...|+.|++ +++
T Consensus 142 kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~-------------~~v~s~~~h~~~Ind~q~-------s~d 201 (327)
T KOG0643|consen 142 KIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGK-------------ELVDSDEEHSSKINDLQF-------SRD 201 (327)
T ss_pred EecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCc-------------eeeechhhhccccccccc-------cCC
Confidence 233455667788889999999999999999999999874 456677889999999999 999
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..+++|++.|.+-++||+++.+.++++.... ||++.+++ |..+.++.|+.....-|=...
T Consensus 202 ~T~FiT~s~Dttakl~D~~tl~v~Kty~te~---------------PvN~aais-----P~~d~VilgGGqeA~dVTTT~ 261 (327)
T KOG0643|consen 202 RTYFITGSKDTTAKLVDVRTLEVLKTYTTER---------------PVNTAAIS-----PLLDHVILGGGQEAMDVTTTS 261 (327)
T ss_pred cceEEecccCccceeeeccceeeEEEeeecc---------------cccceecc-----cccceEEecCCceeeeeeeec
Confidence 9999999999999999999999888876544 89999999 777777666543333332222
Q ss_pred cCCCee----------eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 227 ISCNKF----------DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 227 ~~~~~~----------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+.+++ +.+..+++|-++|.+++|+|+|+..++|++||.|++.-..
T Consensus 262 ~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 262 TRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEec
Confidence 333322 2456678999999999999999999999999999997554
No 83
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=4.6e-24 Score=161.75 Aligned_cols=191 Identities=20% Similarity=0.265 Sum_probs=150.6
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCc-eecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPL-ITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
.+.+.++||+.++-+||+|++..+-.+. +. +|.+. +..+.|.... +.+++.+.|
T Consensus 110 ~ds~~lltgg~ekllrvfdln~p~App~E~~----ghtg~---Ir~v~wc~eD------------------~~iLSSadd 164 (334)
T KOG0278|consen 110 QDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS----GHTGG---IRTVLWCHED------------------KCILSSADD 164 (334)
T ss_pred ccchhhhccchHHHhhhhhccCCCCCchhhc----CCCCc---ceeEEEeccC------------------ceEEeeccC
Confidence 4577899999999999999987553221 11 13333 3336666666 888998999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++||+||..++. .++++. ...+|+++.+ +++|++|.++ ..+.|++||..+...++.+
T Consensus 165 ~tVRLWD~rTgt--------------~v~sL~-~~s~VtSlEv-------s~dG~ilTia-~gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 165 KTVRLWDHRTGT--------------EVQSLE-FNSPVTSLEV-------SQDGRILTIA-YGSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred CceEEEEeccCc--------------EEEEEe-cCCCCcceee-------ccCCCEEEEe-cCceeEEeccccccceeec
Confidence 999999999965 445554 3568999999 8899776555 5679999999998888877
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAF 252 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~ 252 (318)
+... .|.+.+++ |+...+++|+.|..++.|| ..++. .+..+ ++|.++|.|+.|+|
T Consensus 222 k~P~---------------nV~SASL~-----P~k~~fVaGged~~~~kfD--y~Tge--Ei~~~nkgh~gpVhcVrFSP 277 (334)
T KOG0278|consen 222 KMPC---------------NVESASLH-----PKKEFFVAGGEDFKVYKFD--YNTGE--EIGSYNKGHFGPVHCVRFSP 277 (334)
T ss_pred cCcc---------------cccccccc-----CCCceEEecCcceEEEEEe--ccCCc--eeeecccCCCCceEEEEECC
Confidence 7554 67888888 8889999999999999995 44555 45554 89999999999999
Q ss_pred CCCEEEEecCCCcEEEEEecCCcee
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+|...++|++||+|+||.+..++..
T Consensus 278 dGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 278 DGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceeeccCCCceEEEEEecCCCch
Confidence 9999999999999999998765443
No 84
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=170.11 Aligned_cols=239 Identities=17% Similarity=0.176 Sum_probs=180.8
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------C--C
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------L--S 69 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~--~ 69 (318)
.|..-++++|.|.+..||++......... ..-.+|...+.. +.|+|+.+ + .
T Consensus 234 ~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-~tlvgh~~~V~y---i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~ 309 (519)
T KOG0293|consen 234 HNGKYLASASKDSTAIIWIVVYDVHFKLK-KTLVGHSQPVSY---IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPS 309 (519)
T ss_pred CCCeeEeeccCCceEEEEEEecCcceeee-eeeecccCceEE---EEECCCCCeEEecCchHheeeccCCcchhhhhccc
Confidence 34566899999999999987665442211 112335555444 99999976 1 1
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+|...+.++++.|+|..+++|+-|+.+..||.+.. ....+++- ...|.+++. .++|+
T Consensus 310 ~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn---------------~~~~W~gvr~~~v~dlai-------t~Dgk 367 (519)
T KOG0293|consen 310 GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN---------------ILGNWEGVRDPKVHDLAI-------TYDGK 367 (519)
T ss_pred CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc---------------hhhcccccccceeEEEEE-------cCCCc
Confidence 23467889999999999999999999999999743 33344433 256999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
++++.+.|..+++++.++......+..+ .+|++++++ .+++++++--.+..+++|| .+
T Consensus 368 ~vl~v~~d~~i~l~~~e~~~dr~lise~---------------~~its~~iS-----~d~k~~LvnL~~qei~LWD--l~ 425 (519)
T KOG0293|consen 368 YVLLVTVDKKIRLYNREARVDRGLISEE---------------QPITSFSIS-----KDGKLALVNLQDQEIHLWD--LE 425 (519)
T ss_pred EEEEEecccceeeechhhhhhhcccccc---------------CceeEEEEc-----CCCcEEEEEcccCeeEEee--cc
Confidence 9999999999999998876554433322 389999999 9999999999999999995 44
Q ss_pred CCeeeEeeeeecccCcee--EEEEcC-CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVT--GLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~--~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+ .+..+.||...-. .-+|-- +..++++|++|+.|+||+..++++.. .+.||...|++|+
T Consensus 426 e~~--lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~--------------~LsGHs~~vNcVs 489 (519)
T KOG0293|consen 426 ENK--LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLA--------------VLSGHSKTVNCVS 489 (519)
T ss_pred hhh--HHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeE--------------eecCCcceeeEEe
Confidence 333 6777888876433 234543 34699999999999999999988774 5677888999999
Q ss_pred EcC-CCcEEEEEe
Q 021036 306 VSP-GNLVVAMVQ 317 (318)
Q Consensus 306 ~sp-~~~~l~~~~ 317 (318)
|+| +..++|++.
T Consensus 490 wNP~~p~m~ASas 502 (519)
T KOG0293|consen 490 WNPADPEMFASAS 502 (519)
T ss_pred cCCCCHHHhhccC
Confidence 999 667788763
No 85
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=171.86 Aligned_cols=210 Identities=19% Similarity=0.206 Sum_probs=161.0
Q ss_pred CCCCCccceEEee-CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 12 MKDSNTHPTVAAS-KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 12 ~~~~~~~~~~t~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+...|....+.++ ..+.+.+|.+.+|..+..+. +|..+|+|+.|+.++.+|++|
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~-------------------------aHYQ~ITcL~fs~dgs~iiTg 141 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLS-------------------------AHYQSITCLKFSDDGSHIITG 141 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHH-------------------------hhccceeEEEEeCCCcEEEec
Confidence 3344444445555 99999999999998755443 355566666666666999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCcc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.||.|.+|.+.+-- ......+.+++..+..|.-+|+++.. ... ..+|+|+|.|.++++||+..+.
T Consensus 142 skDg~V~vW~l~~lv-----~a~~~~~~~p~~~f~~HtlsITDl~i-------g~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 142 SKDGAVLVWLLTDLV-----SADNDHSVKPLHIFSDHTLSITDLQI-------GSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred CCCccEEEEEEEeec-----ccccCCCccceeeeccCcceeEEEEe-------cCCCccceEEEecCCceEEEEEeccce
Confidence 999999999885310 00011135688899999999999998 433 3689999999999999999998
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC------------eeeEee
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN------------KFDKVG 236 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------------~~~~~~ 236 (318)
.+.++.... ++.+++++ |-+..+++|+.+|.|.+.++....+ .-..+.
T Consensus 210 LLlti~fp~---------------si~av~lD-----pae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 210 LLLTITFPS---------------SIKAVALD-----PAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred eeEEEecCC---------------cceeEEEc-----ccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 887765433 78999999 9999999999999998875432221 112445
Q ss_pred eeecccC--ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 237 SYNAHDQ--VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 237 ~~~~h~~--~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.+|.+ .|+|++.+.||..|++|+.||.|.|||+.+.++.+
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iR 313 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIR 313 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHH
Confidence 5778888 99999999999999999999999999998866654
No 86
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=1.1e-23 Score=184.43 Aligned_cols=197 Identities=13% Similarity=0.175 Sum_probs=167.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+-+|.+||..++|.|.+.++++|++|-.|++|++.+.+ .+-++.+|-+.|..+.| .+.-
T Consensus 47 FdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr--------------clftL~GHlDYVRt~~F-------Hhey 105 (1202)
T KOG0292|consen 47 FDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR--------------CLFTLLGHLDYVRTVFF-------HHEY 105 (1202)
T ss_pred hhccCCccceeeecCCCCeEEecCCccEEEEEecccce--------------ehhhhccccceeEEeec-------cCCC
Confidence 66899999999999999999999999999999999854 55788999999999999 6777
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
-+++++|.|.+|+||+..+++++..+.+|. +.|.|.+|+ |..++++++|-|.+|++||+.-
T Consensus 106 PWIlSASDDQTIrIWNwqsr~~iavltGHn--------------HYVMcAqFh-----ptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 106 PWILSASDDQTIRIWNWQSRKCIAVLTGHN--------------HYVMCAQFH-----PTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred ceEEEccCCCeEEEEeccCCceEEEEecCc--------------eEEEeeccC-----CccceEEEecccceEEEEeecc
Confidence 799999999999999999999998876655 489999999 9999999999999999998531
Q ss_pred -CC-----C-------------------eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 228 -SC-----N-------------------KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 228 -~~-----~-------------------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+. + .....+.+.||...|.-++|+|.-..|++|+.|+.|++|.+...+...+.
T Consensus 167 LRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD-- 244 (1202)
T KOG0292|consen 167 LRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD-- 244 (1202)
T ss_pred hhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh--
Confidence 00 0 01112346789999999999999999999999999999999765554332
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.++|...|.++-|+|....|++.
T Consensus 245 ----------tcrgH~nnVssvlfhp~q~lIlSn 268 (1202)
T KOG0292|consen 245 ----------TCRGHYNNVSSVLFHPHQDLILSN 268 (1202)
T ss_pred ----------hhhcccCCcceEEecCccceeEec
Confidence 456788899999999987777764
No 87
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=4.6e-24 Score=184.35 Aligned_cols=189 Identities=18% Similarity=0.293 Sum_probs=147.9
Q ss_pred ccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 73 YPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 73 ~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
+.+.++.+++ ..++||+++..|.|.+||+...-. .+++..|..|...|+++.| ++....+|+
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-----------nk~l~~f~EH~Rs~~~ldf------h~tep~ili 150 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR-----------NKLLTVFNEHERSANKLDF------HSTEPNILI 150 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCcccc-----------chhhhHhhhhccceeeeee------ccCCccEEE
Confidence 3444555543 268999999999999999986211 3455678899999999999 455567899
Q ss_pred EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
+|+.||+|++||++..+...++..... .|+.+.|+ |..+..|+++...|.+++| |++...
T Consensus 151 SGSQDg~vK~~DlR~~~S~~t~~~nSE--------------SiRDV~fs----p~~~~~F~s~~dsG~lqlW--DlRqp~ 210 (839)
T KOG0269|consen 151 SGSQDGTVKCWDLRSKKSKSTFRSNSE--------------SIRDVKFS----PGYGNKFASIHDSGYLQLW--DLRQPD 210 (839)
T ss_pred ecCCCceEEEEeeecccccccccccch--------------hhhceeec----cCCCceEEEecCCceEEEe--eccCch
Confidence 999999999999998887777765443 79999999 4678999999999999999 555433
Q ss_pred eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 232 FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
++...+.+|.++|.++.|+|++.+|||||.|++|+|||+.+.....+..-.. ..+|..|+|-|+.+
T Consensus 211 -r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-------------iapv~rVkWRP~~~ 276 (839)
T KOG0269|consen 211 -RCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-------------IAPVGRVKWRPARS 276 (839)
T ss_pred -hHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-------------cceeeeeeeccCcc
Confidence 2566788999999999999999999999999999999998644332111111 13788899998665
Q ss_pred E
Q 021036 312 V 312 (318)
Q Consensus 312 ~ 312 (318)
+
T Consensus 277 ~ 277 (839)
T KOG0269|consen 277 Y 277 (839)
T ss_pred c
Confidence 4
No 88
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=3.4e-23 Score=176.00 Aligned_cols=209 Identities=19% Similarity=0.209 Sum_probs=170.1
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc-----------------------CCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR-----------------------LSSKK 72 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~-----------------------~~~~~ 72 (318)
+...++.|..+|.+.|||..+.+.+..+... |... +.+++|+.... +.+|.
T Consensus 228 ~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~---h~~r---vg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~ 301 (484)
T KOG0305|consen 228 DGSHLAVGTSDGTVQIWDVKEQKKTRTLRGS---HASR---VGSLAWNSSVLSSGSRDGKILNHDVRISQHVVSTLQGHR 301 (484)
T ss_pred CCCEEEEeecCCeEEEEehhhccccccccCC---cCce---eEEEeccCceEEEecCCCcEEEEEEecchhhhhhhhccc
Confidence 3455788999999999999998887776542 3333 44578875421 55789
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..|..+.++++++++|+|+.|+.+.|||... ..+...+..|.+.|.+++|+|++. .+||+
T Consensus 302 qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~--------------~~p~~~~~~H~aAVKA~awcP~q~------~lLAs 361 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLASGGNDNVVFIWDGLS--------------PEPKFTFTEHTAAVKALAWCPWQS------GLLAT 361 (484)
T ss_pred ceeeeeEECCCCCeeccCCCccceEeccCCC--------------ccccEEEeccceeeeEeeeCCCcc------CceEE
Confidence 9999999999999999999999999999965 346678899999999999966543 46888
Q ss_pred Ee--CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccC
Q 021036 153 GS--SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDIS 228 (318)
Q Consensus 153 ~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~ 228 (318)
|+ .|++|++||..+++.+..+... ..|+.|.|+ +..+.|+++ ..++.|.||++ .
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~~vdtg---------------sQVcsL~Ws-----k~~kEi~sthG~s~n~i~lw~~--p 419 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARIDSVDTG---------------SQVCSLIWS-----KKYKELLSTHGYSENQITLWKY--P 419 (484)
T ss_pred cCCCcccEEEEEEcCCCcEecccccC---------------CceeeEEEc-----CCCCEEEEecCCCCCcEEEEec--c
Confidence 75 6999999999999988876643 389999999 777655554 36778999954 3
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+.+ .+..+.+|...|..++++|||..+++|+.|.++++|++-..
T Consensus 420 s~~--~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 420 SMK--LVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred ccc--eeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 433 78889999999999999999999999999999999998764
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=4.9e-23 Score=180.90 Aligned_cols=191 Identities=20% Similarity=0.334 Sum_probs=155.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
....+++||.|+++++||..+++|...+.. |.+. +.++.-. +.++++|+.|.+
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~g----h~st---v~~~~~~--------------------~~~~~sgs~D~t 312 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQG----HTSS---VRCLTID--------------------PFLLVSGSRDNT 312 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecC----CCce---EEEEEcc--------------------CceEeeccCCce
Confidence 355689999999999999999999777764 3333 2223222 267788999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
|++|+++++. .+..+.+|.++|+++.. . +.++++|+.|++|++||+.+++++..+.+
T Consensus 313 VkVW~v~n~~--------------~l~l~~~h~~~V~~v~~-------~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g 369 (537)
T KOG0274|consen 313 VKVWDVTNGA--------------CLNLLRGHTGPVNCVQL-------D--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG 369 (537)
T ss_pred EEEEeccCcc--------------eEEEeccccccEEEEEe-------c--CCEEEEEecCceEEEEEhhhceeeeeecC
Confidence 9999999854 56778889999999999 3 77999999999999999999999999887
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
|.. .|+++.+. +. ..+++|+.|+.|++| |+++.. +++.++.+|..-+..+.+ .++
T Consensus 370 H~~--------------~V~sl~~~-----~~-~~~~Sgs~D~~IkvW--dl~~~~-~c~~tl~~h~~~v~~l~~--~~~ 424 (537)
T KOG0274|consen 370 HTG--------------RVYSLIVD-----SE-NRLLSGSLDTTIKVW--DLRTKR-KCIHTLQGHTSLVSSLLL--RDN 424 (537)
T ss_pred Ccc--------------eEEEEEec-----Cc-ceEEeeeeccceEee--cCCchh-hhhhhhcCCccccccccc--ccc
Confidence 665 89999776 33 899999999999999 555652 378889999988866654 477
Q ss_pred EEEEecCCCcEEEEEecCCceeeeec
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
+|++++.|++|++||...+.+.....
T Consensus 425 ~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 425 FLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred eeEeccccccEEEeecccCceeeeec
Confidence 99999999999999999877665443
No 90
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=2.9e-23 Score=178.95 Aligned_cols=196 Identities=22% Similarity=0.238 Sum_probs=160.2
Q ss_pred CccceEEeeCCCceeEeecCCCC-----CCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 16 NTHPTVAASKSKGNSITKIPSNC-----CLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+..-.+|||.|++|++||..-.. ....++..+. +...-...|.|+.+||++++||++
T Consensus 465 D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~------------------rtLel~ddvL~v~~Spdgk~LaVs 526 (888)
T KOG0306|consen 465 DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHT------------------RTLELEDDVLCVSVSPDGKLLAVS 526 (888)
T ss_pred CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccc------------------eEEeccccEEEEEEcCCCcEEEEE
Confidence 34457999999999999865321 1111222110 011112235555555556999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
--|.+|++|-+++ .+..-++.||.-||.|+.. ++++++++|||.|.+|++|-++=|.|.
T Consensus 527 LLdnTVkVyflDt--------------lKFflsLYGHkLPV~smDI-------S~DSklivTgSADKnVKiWGLdFGDCH 585 (888)
T KOG0306|consen 527 LLDNTVKVYFLDT--------------LKFFLSLYGHKLPVLSMDI-------SPDSKLIVTGSADKNVKIWGLDFGDCH 585 (888)
T ss_pred eccCeEEEEEecc--------------eeeeeeecccccceeEEec-------cCCcCeEEeccCCCceEEeccccchhh
Confidence 9999999999998 6677889999999999999 999999999999999999999999999
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
+.+..|.. .|.++.|. |...+|++++.|+.|+-| |. .+++.+..+.+|...|++++.
T Consensus 586 KS~fAHdD--------------Svm~V~F~-----P~~~~FFt~gKD~kvKqW--Dg--~kFe~iq~L~~H~~ev~cLav 642 (888)
T KOG0306|consen 586 KSFFAHDD--------------SVMSVQFL-----PKTHLFFTCGKDGKVKQW--DG--EKFEEIQKLDGHHSEVWCLAV 642 (888)
T ss_pred hhhhcccC--------------ceeEEEEc-----ccceeEEEecCcceEEee--ch--hhhhhheeeccchheeeeeEE
Confidence 88877765 89999999 899999999999999999 43 345588999999999999999
Q ss_pred cCCCCEEEEecCCCcEEEEEecC
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+|+|.++++++.|.+|++|....
T Consensus 643 ~~~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 643 SPNGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCCCCeEEeccCCceeEeeeccC
Confidence 99999999999999999998754
No 91
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.1e-22 Score=148.35 Aligned_cols=240 Identities=17% Similarity=0.142 Sum_probs=167.8
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
...+.||++++.||--++.-..+. .. |........ +. ..+.+.|.+.|.|.++|+.|++|++|+.|..|+
T Consensus 45 ~lyavgsnskt~ric~yp~l~~~r--~~----hea~~~pp~-v~---~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 45 GLYAVGSNSKTFRICAYPALIDLR--HA----HEAAKQPPS-VL---CKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred ceEEeccCCceEEEEccccccCcc--cc----cccccCCCe-EE---eeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 345789999999997555422111 11 111110000 10 013445677777777777779999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+..++...+.. .-....+.-|.+.|..++|+ .+....+.+|++++. |..|.+-|...|+..+.+.+|
T Consensus 115 ~l~fn~dt~~~---------~g~dle~nmhdgtirdl~fl---d~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sgh 182 (350)
T KOG0641|consen 115 VLPFNADTCNA---------TGHDLEFNMHDGTIRDLAFL---DDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGH 182 (350)
T ss_pred EEecccccccc---------cCcceeeeecCCceeeeEEe---cCCCcCceEEEecCCCcceEEEeecCCCCcceeecCC
Confidence 98887654321 11234577899999999993 223456678888764 778888899899888887766
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee----c---ccCceeEEE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN----A---HDQVVTGLA 249 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~----~---h~~~v~~~~ 249 (318)
.. -|..+ ++ -++-+|++|++|.+|++||+.... .+.++. + ....|.+++
T Consensus 183 tg--------------hilal-ys-----wn~~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~ 238 (350)
T KOG0641|consen 183 TG--------------HILAL-YS-----WNGAMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVA 238 (350)
T ss_pred cc--------------cEEEE-EE-----ecCcEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEE
Confidence 53 34333 22 358899999999999999655443 333332 1 135789999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.|++|++|-.|....+||++++...+ .+..|+..|.+|.|+|...|++++.
T Consensus 239 vdpsgrll~sg~~dssc~lydirg~r~iq--------------~f~phsadir~vrfsp~a~yllt~s 292 (350)
T KOG0641|consen 239 VDPSGRLLASGHADSSCMLYDIRGGRMIQ--------------RFHPHSADIRCVRFSPGAHYLLTCS 292 (350)
T ss_pred ECCCcceeeeccCCCceEEEEeeCCceee--------------eeCCCccceeEEEeCCCceEEEEec
Confidence 99999999999999999999999987664 2223677999999999999998874
No 92
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=1.4e-23 Score=158.58 Aligned_cols=196 Identities=20% Similarity=0.250 Sum_probs=150.9
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.+...+=-|+.|||++.|++|+|+.++.+.. .+++.++.+|.++|+.+.| .++.-|.+|++++
T Consensus 14 IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GPVwqv~w-----ahPk~G~iLAScs 77 (299)
T KOG1332|consen 14 IHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGPVWKVAW-----AHPKFGTILASCS 77 (299)
T ss_pred hhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCCeeEEee-----cccccCcEeeEee
Confidence 33333333469999999999999999987542 2678899999999999999 3345899999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
.||.|.||.-.+++-.+. .. ...|...|++++|. |. |-.|++++.||.|.+.+++... .+
T Consensus 78 YDgkVIiWke~~g~w~k~-~e-----------~~~h~~SVNsV~wa-----pheygl~LacasSDG~vsvl~~~~~g-~w 139 (299)
T KOG1332|consen 78 YDGKVIIWKEENGRWTKA-YE-----------HAAHSASVNSVAWA-----PHEYGLLLACASSDGKVSVLTYDSSG-GW 139 (299)
T ss_pred cCceEEEEecCCCchhhh-hh-----------hhhhcccceeeccc-----ccccceEEEEeeCCCcEEEEEEcCCC-Cc
Confidence 999999999888732221 11 13467799999998 54 6799999999999999776652 33
Q ss_pred eEeeeeecccCceeEEEEcCC---C-----------CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 233 DKVGSYNAHDQVVTGLAWAFD---G-----------CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~---~-----------~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
........|.-.|++++|.|. | +.|++|+.|..|+||+...+..... ..+.+|.
T Consensus 140 ~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e------------~~l~~H~ 207 (299)
T KOG1332|consen 140 TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLE------------RTLEGHK 207 (299)
T ss_pred cchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhh------------hhhhhcc
Confidence 233445689999999999986 4 5699999999999999887633211 2466789
Q ss_pred eeeeEEEEcCCC----cEEEEE
Q 021036 299 VSCLGMAVSPGN----LVVAMV 316 (318)
Q Consensus 299 ~~v~~v~~sp~~----~~l~~~ 316 (318)
+.|+.++|+|.- .+||++
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred hhhhhhhhccccCCCceeeEEe
Confidence 999999999953 356665
No 93
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=6.4e-23 Score=178.65 Aligned_cols=185 Identities=22% Similarity=0.297 Sum_probs=157.7
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee---ccccccEEEEEeeeecCCCCCCCcE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF---QAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
..++++++++.|++.+.|...|.|-+|++++|- ...++ +.|..+|++++. ..-++.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi--------------~r~sf~~~~ah~~~V~gla~-------D~~n~~ 507 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI--------------HRKSFGDSPAHKGEVTGLAV-------DGTNRL 507 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe--------------eecccccCccccCceeEEEe-------cCCCce
Confidence 456667777777999999999999999999853 44555 589999999999 778889
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++++.+|.+++||.........+.... .+.++..+ ....+++.+..|-.|.++ |..+
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~---------------~~~~iv~h-----r~s~l~a~~~ddf~I~vv--D~~t 565 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGS---------------SITGIVYH-----RVSDLLAIALDDFSIRVV--DVVT 565 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCC---------------Ccceeeee-----ehhhhhhhhcCceeEEEE--Echh
Confidence 9999999999999999877666655433 56777777 678899999999999999 5556
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+ .+..+.+|++.|++++|||||++|++++.|++|++||+.++.+.....-.. ++.++.|+|+
T Consensus 566 ~k--vvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~---------------~~~sls~SPn 628 (910)
T KOG1539|consen 566 RK--VVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDS---------------PCTSLSFSPN 628 (910)
T ss_pred hh--hhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCC---------------cceeeEECCC
Confidence 55 678899999999999999999999999999999999999998876554443 7799999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|.+|||+|
T Consensus 629 gD~LAT~H 636 (910)
T KOG1539|consen 629 GDFLATVH 636 (910)
T ss_pred CCEEEEEE
Confidence 99999987
No 94
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=2.7e-23 Score=185.90 Aligned_cols=218 Identities=15% Similarity=0.159 Sum_probs=160.9
Q ss_pred ccccccCCCCCccEEEEec--CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 73 YPVPQNGSSNWFSILAVGG--RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
..|++++++|++..+++|+ .||.++||+.+.--... ......-.+.+..+..|.+.|+|+.| +++|++|
T Consensus 14 ~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~--~~~~~~l~k~l~~m~~h~~sv~CVR~-------S~dG~~l 84 (942)
T KOG0973|consen 14 KSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEK--EEKNENLPKHLCTMDDHDGSVNCVRF-------SPDGSYL 84 (942)
T ss_pred eeEEEEEecCCceeEecCCccccccceeeccccccchh--hhhhcccchhheeeccccCceeEEEE-------CCCCCeE
Confidence 4578888999999999999 99999999986311000 00000013456677889999999999 9999999
Q ss_pred EEEeCCCcEEEEECCCcceeeeec-----ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAE-----AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
++|+.|+.|.+|+......-..+. .+...++. .....+|...|..++|+ |++.+|++++-|++|.+|
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Ws-----p~~~~lvS~s~DnsViiw-- 156 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWS-----PDDSLLVSVSLDNSVIIW-- 156 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccC-----CCccEEEEecccceEEEE--
Confidence 999999999999977310000110 00111111 13456789999999999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+.++. +.+..+.+|.+.|-.+.|+|-|+|||+-+.|++|++|++..-.+......+.. ...-+..++.+.
T Consensus 157 n~~tF--~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~--------~~~~~T~f~RlS 226 (942)
T KOG0973|consen 157 NAKTF--ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE--------ESPLTTFFLRLS 226 (942)
T ss_pred ccccc--eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------hCCCcceeeecc
Confidence 66665 48889999999999999999999999999999999999765333322222211 111234678999
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
|||||.+|++.+
T Consensus 227 WSPDG~~las~n 238 (942)
T KOG0973|consen 227 WSPDGHHLASPN 238 (942)
T ss_pred cCCCcCeecchh
Confidence 999999999875
No 95
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.2e-23 Score=167.86 Aligned_cols=187 Identities=19% Similarity=0.220 Sum_probs=146.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.+++|-.||++||+|...|.|+|+|.++ ...++.+.+|+.+|..+.| +..++..|++|+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~--------------r~iLR~~~ah~apv~~~~f------~~~d~t~l~s~s 130 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKS--------------RVILRQLYAHQAPVHVTKF------SPQDNTMLVSGS 130 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecccc--------------HHHHHHHhhccCceeEEEe------cccCCeEEEecC
Confidence 44555555669999999999999999665 2355788999999999999 345567888899
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.|+.+++||+.+......+.+|+ ..|.+.+++ |.++.++++|+.||+|++||....+ . .
T Consensus 131 Dd~v~k~~d~s~a~v~~~l~~ht--------------DYVR~g~~~----~~~~hivvtGsYDg~vrl~DtR~~~-~--~ 189 (487)
T KOG0310|consen 131 DDKVVKYWDLSTAYVQAELSGHT--------------DYVRCGDIS----PANDHIVVTGSYDGKVRLWDTRSLT-S--R 189 (487)
T ss_pred CCceEEEEEcCCcEEEEEecCCc--------------ceeEeeccc----cCCCeEEEecCCCceEEEEEeccCC-c--e
Confidence 99999999999877544555554 489999999 3567799999999999999544333 2 5
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+.++. |..+|..+.+-|.|..|++++. ..|++||+.++...... +..|...|+|+.+..++..|+
T Consensus 190 v~eln-hg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~-------------~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 190 VVELN-HGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS-------------MFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred eEEec-CCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh-------------hhcccceEEEEEeecCCceEe
Confidence 66664 9999999999999999998874 58999999865443211 122667999999999999998
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
+|.
T Consensus 255 S~s 257 (487)
T KOG0310|consen 255 SGS 257 (487)
T ss_pred ecc
Confidence 875
No 96
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.8e-22 Score=157.36 Aligned_cols=244 Identities=15% Similarity=0.145 Sum_probs=174.5
Q ss_pred cCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecc----------------------cc
Q 021036 9 SNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSP----------------------VL 66 (318)
Q Consensus 9 ~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p----------------------~~ 66 (318)
+-++. .....++.+|-||+++++|++.......+. +...++ +++|.+ ..
T Consensus 18 ~v~f~-~~~~~LLvssWDgslrlYdv~~~~l~~~~~-----~~~plL---~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 18 SVKFS-PSSSDLLVSSWDGSLRLYDVPANSLKLKFK-----HGAPLL---DCAFADESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred eEEEc-CcCCcEEEEeccCcEEEEeccchhhhhhee-----cCCcee---eeeccCCceEEEeccCceEEEEEecCCcce
Confidence 34455 445667888899999999999875544433 222211 133332 22
Q ss_pred cCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 67 RLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 67 ~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
.+..|..+|.|+..+.....+++|+.|++|++||..... ....+. ....|.++.. .
T Consensus 89 ~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~--------------~~~~~d-~~kkVy~~~v---------~ 144 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV--------------VVGTFD-QGKKVYCMDV---------S 144 (323)
T ss_pred eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc--------------cccccc-cCceEEEEec---------c
Confidence 255799999999999988999999999999999998522 122222 2348999877 5
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
++.|++|+.|..|.+||+++........... -+..+.++++- |++.-+++++-||.|.+=.+|
T Consensus 145 g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~------------lkyqtR~v~~~-----pn~eGy~~sSieGRVavE~~d 207 (323)
T KOG1036|consen 145 GNRLVVGTSDRKVLIYDLRNLDEPFQRRESS------------LKYQTRCVALV-----PNGEGYVVSSIEGRVAVEYFD 207 (323)
T ss_pred CCEEEEeecCceEEEEEcccccchhhhcccc------------ceeEEEEEEEe-----cCCCceEEEeecceEEEEccC
Confidence 6789999999999999999876544222111 13378899998 888899999999999986555
Q ss_pred cCCCeeeEeeeeeccc---------CceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCC
Q 021036 227 ISCNKFDKVGSYNAHD---------QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPD 296 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~ 296 (318)
.+....+.-..|+.|. .+|.+++|+|-...|+||+.||.|.+||+.+++.. ++...+
T Consensus 208 ~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~------------- 274 (323)
T KOG1036|consen 208 DSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYE------------- 274 (323)
T ss_pred CchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCC-------------
Confidence 5411111233455453 47899999999889999999999999999876543 222221
Q ss_pred cceeeeEEEEcCCCcEEEEEe
Q 021036 297 AFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..|.+++|+.||..||.+.
T Consensus 275 --~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 275 --TSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred --CceEEEEeccCCCeEEEEe
Confidence 3789999999999999874
No 97
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=7.6e-23 Score=158.68 Aligned_cols=225 Identities=13% Similarity=0.138 Sum_probs=166.2
Q ss_pred eeeecccccCC-CCcccccccCCCC-CccEEEEecCCCcEEEEEccCCccccccccccCCcee---EEeeeccccccEEE
Q 021036 59 AVAWSPVLRLS-SKKYPVPQNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAV---LIGLFQAHNSWITS 133 (318)
Q Consensus 59 ~~~w~p~~~~~-~~~~~v~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~ 133 (318)
.+..+++.-+. .|.+.|..+.+.+ .|+++++|+.||.|.+||++.....+... .-.... ....-.+|.-.|.+
T Consensus 29 ~L~Ln~d~d~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~--li~k~~c~v~~~h~~~Hky~iss 106 (397)
T KOG4283|consen 29 SLQLNNDKDFVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG--LIAKHKCIVAKQHENGHKYAISS 106 (397)
T ss_pred eeeccCCcceeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc--ceeheeeeccccCCccceeeeee
Confidence 37777765543 4889999999888 48999999999999999998643211000 000000 01122468888999
Q ss_pred EEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC---ceE
Q 021036 134 ISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR---LML 210 (318)
Q Consensus 134 ~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~---~~~ 210 (318)
+.|-|+ +.-.|.+++-|.++++||..+.+....|+..+ .|+.-+++ |- .-+
T Consensus 107 ~~WyP~------DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~---------------~VYshamS-----p~a~sHcL 160 (397)
T KOG4283|consen 107 AIWYPI------DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG---------------KVYSHAMS-----PMAMSHCL 160 (397)
T ss_pred eEEeee------cCceeecccccceEEEeecccceeeEEeecCc---------------eeehhhcC-----hhhhcceE
Confidence 999554 34478999999999999999988887776554 45565665 32 457
Q ss_pred EEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecC--CceeeeecCCCCCC
Q 021036 211 LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHG--NSLSQVSIPTNTPG 287 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~--~~~~~~~~~~~~~~ 287 (318)
+|+|..+-+|++. |+..+. ..+.+.+|.+.|.++.|+|... .|++|+.||.|++||++. ++...+..+.. ..
T Consensus 161 iA~gtr~~~VrLC--Di~SGs--~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~-k~ 235 (397)
T KOG4283|consen 161 IAAGTRDVQVRLC--DIASGS--FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNT-KR 235 (397)
T ss_pred EEEecCCCcEEEE--eccCCc--ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccC-cc
Confidence 8899999999998 777887 5678999999999999999877 578999999999999985 45554444432 11
Q ss_pred ccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 288 LQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 288 ~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.......+.|.+.|++++|+.|+.+++++
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~ 264 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASC 264 (397)
T ss_pred Cccccccccccceeeeeeecccchhhhhc
Confidence 12223567899999999999999998875
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.1e-24 Score=185.18 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=167.7
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
..+.+|..+|-++.++.+..+|++|+.+|+|++||++. .+.++++.+|...+.++.| +|
T Consensus 64 ~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDlee--------------Ak~vrtLtgh~~~~~sv~f-------~P 122 (825)
T KOG0267|consen 64 TSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEE--------------AKIVRTLTGHLLNITSVDF-------HP 122 (825)
T ss_pred heeeccCCcceeeecCcchhhhcccccCCceeeeehhh--------------hhhhhhhhccccCcceeee-------cc
Confidence 34778999999999999999999999999999999998 4466799999999999999 88
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
-+.++++|+.|+.+++||.+...+.+.+.+|.. .+..+.|+ |+|.+++.|+.|..++||
T Consensus 123 ~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~--------------vv~~l~ls-----P~Gr~v~~g~ed~tvki~-- 181 (825)
T KOG0267|consen 123 YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR--------------VVDVLRLS-----PDGRWVASGGEDNTVKIW-- 181 (825)
T ss_pred ceEEeccccccccceehhhhccCceeeecCCcc--------------eeEEEeec-----CCCceeeccCCcceeeee--
Confidence 899999999999999999998778877766543 78899999 999999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
|...++ .+.+|+.|++.+..+.|+|..-++++|+.|+++++||+++-....- ..+ ....|.+++
T Consensus 182 d~~agk--~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s-~~~-------------~~~~v~~~~ 245 (825)
T KOG0267|consen 182 DLTAGK--LSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS-GKP-------------ETDGVRSLA 245 (825)
T ss_pred cccccc--cccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec-cCC-------------ccCCceeee
Confidence 677776 6778999999999999999988999999999999999986444321 111 124889999
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
|+|++..+++|
T Consensus 246 fn~~~~~~~~G 256 (825)
T KOG0267|consen 246 FNPDGKIVLSG 256 (825)
T ss_pred ecCCceeeecC
Confidence 99999998876
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.7e-21 Score=151.98 Aligned_cols=273 Identities=15% Similarity=0.114 Sum_probs=179.2
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
-..+.....++|+|.|++++|||.......-..+..--.|.+. +..+.|.+.. -|+.+|++
T Consensus 19 Vs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~S---i~rV~WAhPE----------------fGqvvA~c 79 (361)
T KOG2445|consen 19 VSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGS---IWRVVWAHPE----------------FGQVVATC 79 (361)
T ss_pred eeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCc---EEEEEecCcc----------------ccceEEEE
Confidence 4456677889999999999999986544333333222234554 3347775433 27999999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
+.|+++.||.-..... ...........++......|+++.|.|.+ -|-.|++++.||.||||+.-..-.+
T Consensus 80 S~Drtv~iWEE~~~~~-----~~~~~~Wv~~ttl~DsrssV~DV~FaP~h-----lGLklA~~~aDG~lRIYEA~dp~nL 149 (361)
T KOG2445|consen 80 SYDRTVSIWEEQEKSE-----EAHGRRWVRRTTLVDSRSSVTDVKFAPKH-----LGLKLAAASADGILRIYEAPDPMNL 149 (361)
T ss_pred ecCCceeeeeeccccc-----ccccceeEEEEEeecCCcceeEEEecchh-----cceEEEEeccCcEEEEEecCCcccc
Confidence 9999999998742110 00001134556677778899999997754 4568999999999999987643222
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-----CcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-----GSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
........ +..+......+..+..|+.|+... -...+||.|+.+ +.++||..+....++..+.++.+|+.+|
T Consensus 150 s~W~Lq~E-i~~~~~pp~~~~~~~~CvsWn~sr--~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI 226 (361)
T KOG2445|consen 150 SQWTLQHE-IQNVIDPPGKNKQPCFCVSWNPSR--MHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPI 226 (361)
T ss_pred ccchhhhh-hhhccCCcccccCcceEEeecccc--ccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcc
Confidence 21110000 000001112234466788887211 125688888866 5789998776666888899999999999
Q ss_pred eEEEEcCC-C---CEEEEecCCCcEEEEEecCCcee--ee-ecCC-CC--CCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 246 TGLAWAFD-G---CCLYSCSQDNFVRSWIFHGNSLS--QV-SIPT-NT--PGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 246 ~~~~~~~~-~---~~l~s~~~d~~v~iwd~~~~~~~--~~-~~~~-~~--~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+.++|.|. | +.||+++.|| |+||.+...... .. ...+ .. ..+.-...+.+|.+.|..+.|+-.|..|++
T Consensus 227 ~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsS 305 (361)
T KOG2445|consen 227 RDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSS 305 (361)
T ss_pred eeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEee
Confidence 99999996 4 3799999999 999999752211 00 0001 00 111133456789999999999999999887
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
.
T Consensus 306 t 306 (361)
T KOG2445|consen 306 T 306 (361)
T ss_pred c
Confidence 5
No 100
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.5e-23 Score=163.83 Aligned_cols=214 Identities=18% Similarity=0.266 Sum_probs=149.8
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
+...+++=|..|.|.||++... ++.+...++.... ....|.-.+.+|...=+.+++||. ...|++|..-+
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~--l~~l~~~~~~~~~-------s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~ 234 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPH--LNALSEPGLEVKD-------SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVK 234 (440)
T ss_pred CcceeeeecccCcEEEEEchhh--hhhhcCccccccc-------cccCceEEecccCccceeeecccccccccccCcccc
Confidence 4455677788999999998541 1111111100000 112222233344444444455443 34688998889
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|++|...++... .-.+.+.+|...|-.|+| ++.....|++||.||+|+|||++.+.....+.
T Consensus 235 ~I~lw~~~~g~W~-----------vd~~Pf~gH~~SVEDLqW------SptE~~vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 235 GIHLWEPSTGSWK-----------VDQRPFTGHTKSVEDLQW------SPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred ceEeeeeccCcee-----------ecCccccccccchhhhcc------CCccCceEEeeecCceEEEEEecCCCccceeE
Confidence 9999999987642 123456789999999999 33345689999999999999999874322211
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD- 253 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~- 253 (318)
...|...|+.|.|+ ..-.+||+|+.||+++|||+..-+.. +++.+++.|..+|+++.|+|.
T Consensus 298 ------------~kAh~sDVNVISWn-----r~~~lLasG~DdGt~~iwDLR~~~~~-~pVA~fk~Hk~pItsieW~p~e 359 (440)
T KOG0302|consen 298 ------------TKAHNSDVNVISWN-----RREPLLASGGDDGTLSIWDLRQFKSG-QPVATFKYHKAPITSIEWHPHE 359 (440)
T ss_pred ------------eeccCCceeeEEcc-----CCcceeeecCCCceEEEEEhhhccCC-CcceeEEeccCCeeEEEecccc
Confidence 14566799999998 66669999999999999965433222 488999999999999999996
Q ss_pred CCEEEEecCCCcEEEEEecC
Q 021036 254 GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~ 273 (318)
...|++++.|.+|.|||+.-
T Consensus 360 ~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 360 DSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CceEEeccCCCcEEEEEeec
Confidence 45889999999999999964
No 101
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=174.62 Aligned_cols=203 Identities=16% Similarity=0.191 Sum_probs=161.2
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.-+.++++||+|++||+|..-|++++|++.. .+....+.+|...|.|+.|.-. ....++|++
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~--------------l~~~~~~eAHesEilcLeyS~p----~~~~kLLAS 521 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE--------------LEYTCFMEAHESEILCLEYSFP----VLTNKLLAS 521 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh--------------hhhhhheecccceeEEEeecCc----hhhhHhhhh
Confidence 3478999999999999999999999999987 4456678899999999999111 113478999
Q ss_pred EeCCCcEEEEECCCc-ceeeeecccccccccce-----------------------------------eeeeecccceeE
Q 021036 153 GSSDGSVRIWDGYIQ-ELQKSAEAHCVPFSLLK-----------------------------------EVVTVNTVPISV 196 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~-----------------------------------~~~~~~~~~v~~ 196 (318)
++.|+.|.+||+... .+++++..|...++.++ .........++.
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 999999999998753 44455555544333322 111123456788
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.+. |+.++++++++|..|+|| +++.++ ....|++ |++....+..+|.|-|+++...|.++.++|..+
T Consensus 602 m~Vd-----p~~k~v~t~cQDrnirif--~i~sgK--q~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s 672 (1080)
T KOG1408|consen 602 MAVD-----PTSKLVVTVCQDRNIRIF--DIESGK--QVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS 672 (1080)
T ss_pred eeeC-----CCcceEEEEecccceEEE--eccccc--eeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence 8888 999999999999999999 666776 5666764 667788899999999999999999999999998
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+++.. .+.+|+..|+++.|.+|.+.|+++
T Consensus 673 gEcvA--------------~m~GHsE~VTG~kF~nDCkHlISv 701 (1080)
T KOG1408|consen 673 GECVA--------------QMTGHSEAVTGVKFLNDCKHLISV 701 (1080)
T ss_pred chhhh--------------hhcCcchheeeeeecccchhheee
Confidence 87763 566788899999999999988875
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.90 E-value=2e-22 Score=177.07 Aligned_cols=184 Identities=21% Similarity=0.239 Sum_probs=152.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.|.++++||..++..+.. ++.+|.+.|.++++...+.+|++|+.|.+++
T Consensus 219 ~~~~~~s~~~tl~~~~~~~~~~i~~------------------------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 219 GFFKSGSDDSTLHLWDLNNGYLILT------------------------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTER 274 (537)
T ss_pred CeEEecCCCceeEEeecccceEEEe------------------------eccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence 4567899999999999887764222 2344555555555555569999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+||..+++ ....+.+|...|.++.. .+.++++|+.|.+|++|++.++..+..+.+|.
T Consensus 275 vWd~~sg~--------------C~~~l~gh~stv~~~~~---------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~ 331 (537)
T KOG0274|consen 275 VWDCSTGE--------------CTHSLQGHTSSVRCLTI---------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHT 331 (537)
T ss_pred eEecCCCc--------------EEEEecCCCceEEEEEc---------cCceEeeccCCceEEEEeccCcceEEEecccc
Confidence 99999965 55788999999999987 34568889999999999999999998877554
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
.+|+++..+ +.++++|+.|++|++| +..+.+ ++.++.+|...|+++.+... ..+
T Consensus 332 --------------~~V~~v~~~-------~~~lvsgs~d~~v~VW--~~~~~~--cl~sl~gH~~~V~sl~~~~~-~~~ 385 (537)
T KOG0274|consen 332 --------------GPVNCVQLD-------EPLLVSGSYDGTVKVW--DPRTGK--CLKSLSGHTGRVYSLIVDSE-NRL 385 (537)
T ss_pred --------------ccEEEEEec-------CCEEEEEecCceEEEE--Ehhhce--eeeeecCCcceEEEEEecCc-ceE
Confidence 489998885 7899999999999999 556665 89999999999999988765 789
Q ss_pred EEecCCCcEEEEEecCC
Q 021036 258 YSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~ 274 (318)
++|+.|++|++||+.+.
T Consensus 386 ~Sgs~D~~IkvWdl~~~ 402 (537)
T KOG0274|consen 386 LSGSLDTTIKVWDLRTK 402 (537)
T ss_pred EeeeeccceEeecCCch
Confidence 99999999999999987
No 103
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=1.1e-22 Score=176.01 Aligned_cols=216 Identities=17% Similarity=0.255 Sum_probs=157.9
Q ss_pred CCCccceEEeeCCCceeEeecCC---CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 14 DSNTHPTVAASKSKGNSITKIPS---NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
....+-++|++..|.|.+||+.. ++.+..+.. |... +.++.|++.. .++|++|
T Consensus 97 ~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~E----H~Rs---~~~ldfh~te-----------------p~iliSG 152 (839)
T KOG0269|consen 97 QLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNE----HERS---ANKLDFHSTE-----------------PNILISG 152 (839)
T ss_pred cchhhhheeecCCCcEEEEecCccccchhhhHhhh----hccc---eeeeeeccCC-----------------ccEEEec
Confidence 34456689999999999999987 333333322 3333 3346666655 5899999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-e
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-L 169 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~ 169 (318)
+.||.|++||++..+ ...++.+....|..+.|+ ...+..|+++...|.+++||++... +
T Consensus 153 SQDg~vK~~DlR~~~--------------S~~t~~~nSESiRDV~fs------p~~~~~F~s~~dsG~lqlWDlRqp~r~ 212 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKK--------------SKSTFRSNSESIRDVKFS------PGYGNKFASIHDSGYLQLWDLRQPDRC 212 (839)
T ss_pred CCCceEEEEeeeccc--------------ccccccccchhhhceeec------cCCCceEEEecCCceEEEeeccCchhH
Confidence 999999999999744 445677788899999994 3446789999999999999999653 3
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
...+ .+|.++|.++.|+ |++.+||+|+.|+.|+||+ +.+.+..++.++. -..+|..|.
T Consensus 213 ~~k~--------------~AH~GpV~c~nwh-----Pnr~~lATGGRDK~vkiWd--~t~~~~~~~~tIn-Tiapv~rVk 270 (839)
T KOG0269|consen 213 EKKL--------------TAHNGPVLCLNWH-----PNREWLATGGRDKMVKIWD--MTDSRAKPKHTIN-TIAPVGRVK 270 (839)
T ss_pred HHHh--------------hcccCceEEEeec-----CCCceeeecCCCccEEEEe--ccCCCccceeEEe-ecceeeeee
Confidence 3333 4566799999999 8999999999999999995 4444444554443 457899999
Q ss_pred EcCCCC-EEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 250 WAFDGC-CLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 250 ~~~~~~-~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
|-|... .|++++ .|-.|+|||++...+.... +..|...++.++|..
T Consensus 271 WRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t-------------~~eH~~~vt~i~W~~ 319 (839)
T KOG0269|consen 271 WRPARSYHLATCSMVVDTSVHVWDVRRPYIPYAT-------------FLEHTDSVTGIAWDS 319 (839)
T ss_pred eccCccchhhhhhccccceEEEEeecccccccee-------------eeccCccccceeccC
Confidence 999855 566665 5778999999865543322 223555666666655
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.90 E-value=4.1e-22 Score=170.50 Aligned_cols=227 Identities=18% Similarity=0.229 Sum_probs=172.9
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhcccccc------------------ccceeeeeccc-----ccCCCCccccc
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAM------------------LHSLAVAWSPV-----LRLSSKKYPVP 76 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~w~p~-----~~~~~~~~~v~ 76 (318)
++++|.|+++++|+-..++.+......+ +.+.+ .+.+.+.|.+. ..+.+|...|.
T Consensus 28 i~s~sRd~t~~vw~~~~~~~l~~~~~~~--~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC 105 (745)
T KOG0301|consen 28 IISGSRDGTVKVWAKKGKQYLETHAFEG--PKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVC 105 (745)
T ss_pred EeecCCCCceeeeeccCcccccceeccc--CcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhcccccee
Confidence 6889999999999876655544222111 11110 11122344443 34889999999
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
++....++. +++|+-|.++++|.... ....+++|...|+++.. -+++ .++|||.|
T Consensus 106 ~ls~~~~~~-~iSgSWD~TakvW~~~~----------------l~~~l~gH~asVWAv~~-------l~e~-~~vTgsaD 160 (745)
T KOG0301|consen 106 SLSIGEDGT-LISGSWDSTAKVWRIGE----------------LVYSLQGHTASVWAVAS-------LPEN-TYVTGSAD 160 (745)
T ss_pred eeecCCcCc-eEecccccceEEecchh----------------hhcccCCcchheeeeee-------cCCC-cEEeccCc
Confidence 999988887 99999999999999864 44568999999999998 6666 89999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.+|++|.- ++.++++.+|.. .|+.+++- ++..|++++.||.|++|+ + ++. .+.
T Consensus 161 KtIklWk~--~~~l~tf~gHtD--------------~VRgL~vl------~~~~flScsNDg~Ir~w~--~-~ge--~l~ 213 (745)
T KOG0301|consen 161 KTIKLWKG--GTLLKTFSGHTD--------------CVRGLAVL------DDSHFLSCSNDGSIRLWD--L-DGE--VLL 213 (745)
T ss_pred ceeeeccC--Cchhhhhccchh--------------heeeeEEe------cCCCeEeecCCceEEEEe--c-cCc--eee
Confidence 99999975 678888887765 78999996 456789999999999994 4 344 677
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
++.+|+.-|++++...++..++++++|++++||+.. .+.+...+|. ..|+++.+-++|..++.|
T Consensus 214 ~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPt--------------tsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 214 EMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPT--------------TSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred eeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCc--------------cceEEEEEeeCCCEEEec
Confidence 889999999999988888899999999999999876 4444444443 267888887777766544
No 105
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.89 E-value=2e-22 Score=167.05 Aligned_cols=209 Identities=17% Similarity=0.203 Sum_probs=153.0
Q ss_pred eeeeccCcCCCCCccceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 4 IVDFTSNKMKDSNTHPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
|..++.+.+-+.+...++|+|.|+++||||++..+. ++.|.... ..+....+..++|+|++
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~--~~g~Rv~~tsC~~nrdg---------------- 329 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP--AGGKRVPVTSCAWNRDG---------------- 329 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc--CCCcccCceeeecCCCc----------------
Confidence 456778889999999999999999999999987543 33333211 22222233445566555
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc--cEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS--WITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
++||+|..||+|.+|+...-.. ......-.+|.. .|+||.| +.+|++|++-+.|++++
T Consensus 330 --~~iAagc~DGSIQ~W~~~~~~v-----------~p~~~vk~AH~~g~~Itsi~F-------S~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 330 --KLIAAGCLDGSIQIWDKGSRTV-----------RPVMKVKDAHLPGQDITSISF-------SYDGNYLLSRGFDDTLK 389 (641)
T ss_pred --chhhhcccCCceeeeecCCccc-----------ccceEeeeccCCCCceeEEEe-------ccccchhhhccCCCcee
Confidence 9999999999999999854221 112223357876 8999999 99999999999999999
Q ss_pred EEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe------CCCcEEEeeeccCCCeee
Q 021036 161 IWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK------GSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 161 iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~~~~ 233 (318)
+||+++.+ ++....+-.. ..+-+.++|+ |+.+++++|. ..|.+.+| +..+..
T Consensus 390 vWDLrq~kkpL~~~tgL~t------------~~~~tdc~FS-----Pd~kli~TGtS~~~~~~~g~L~f~--d~~t~d-- 448 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPT------------PFPGTDCCFS-----PDDKLILTGTSAPNGMTAGTLFFF--DRMTLD-- 448 (641)
T ss_pred eeeccccccchhhhcCCCc------------cCCCCccccC-----CCceEEEecccccCCCCCceEEEE--ecccee--
Confidence 99999754 3433332221 2256788999 9999999986 45668888 544433
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++++.-.+..|..+.|+|.-+.|..|+.||++++|--
T Consensus 449 ~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 449 TVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred eEEEecCCCceEEEEeecchhhheeeecCCCceEEEEC
Confidence 66676666788899999998777888889999998843
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.89 E-value=3.4e-21 Score=156.63 Aligned_cols=220 Identities=19% Similarity=0.192 Sum_probs=167.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++|.|..|++|.++...+..... .|..+|+.+...+.|.||++++.||..-
T Consensus 274 ~~v~~aSad~~i~vws~~~~s~~~~~~-------------------------~h~~~V~~ls~h~tgeYllsAs~d~~w~ 328 (506)
T KOG0289|consen 274 DTVITASADEIIRVWSVPLSSEPTSSR-------------------------PHEEPVTGLSLHPTGEYLLSASNDGTWA 328 (506)
T ss_pred hheeecCCcceEEeeccccccCccccc-------------------------cccccceeeeeccCCcEEEEecCCceEE
Confidence 346889999999999887765433322 2334444555555559999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeec--cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
..|++++.++ .... ...-.+++..| +|+|.+|.+|..|+.|+|||+.++.....|.+
T Consensus 329 Fsd~~~g~~l--------------t~vs~~~s~v~~ts~~f-------HpDgLifgtgt~d~~vkiwdlks~~~~a~Fpg 387 (506)
T KOG0289|consen 329 FSDISSGSQL--------------TVVSDETSDVEYTSAAF-------HPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPG 387 (506)
T ss_pred EEEccCCcEE--------------EEEeeccccceeEEeeE-------cCCceEEeccCCCceEEEEEcCCccccccCCC
Confidence 9999987643 2221 22345899999 89999999999999999999999888877876
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-ccCceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-HDQVVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~ 254 (318)
|.. +|..++|+ .+|.+|++++.|+.|++| |+|..+ ...++.- ....+.++.|++.|
T Consensus 388 ht~--------------~vk~i~Fs-----ENGY~Lat~add~~V~lw--DLRKl~--n~kt~~l~~~~~v~s~~fD~SG 444 (506)
T KOG0289|consen 388 HTG--------------PVKAISFS-----ENGYWLATAADDGSVKLW--DLRKLK--NFKTIQLDEKKEVNSLSFDQSG 444 (506)
T ss_pred CCC--------------ceeEEEec-----cCceEEEEEecCCeEEEE--Eehhhc--ccceeeccccccceeEEEcCCC
Confidence 654 99999999 999999999999999999 455444 3333332 22368999999999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
.+|+.++.|=+|++++-.+.....+. .+..|++..+++.|....++++++.+
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~------------~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIK------------ELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred CeEEeecceeEEEEEecccccceeee------------hhhhcccccceeeecccceEEeeccc
Confidence 99999998888888876655544333 23346678899999999999998753
No 107
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.2e-21 Score=170.88 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=173.2
Q ss_pred ceEEeeCCCceeEeecCCC-CCCCceecch-----hccccccccc-----eeeeec-----ccccCCCCcccccccCCCC
Q 021036 19 PTVAASKSKGNSITKIPSN-CCLPLITADQ-----YASRSAMLHS-----LAVAWS-----PVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~-~~~~~~~~~~-----~~~~~~~~~~-----~~~~w~-----p~~~~~~~~~~v~~~~~s~ 82 (318)
.+++++.|+.|++|+.... +..+.+...+ +.+....+.+ +...+. +++-+.+...++.+++++.
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g 106 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG 106 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec
Confidence 7899999999999976655 2222222111 1111111000 011111 1222556677899999999
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|+++|.|+.|-.|++-+..+. .....+++|.++|.++.| .|++++|++.+.||.|++|
T Consensus 107 ~g~~iaagsdD~~vK~~~~~D~--------------s~~~~lrgh~apVl~l~~-------~p~~~fLAvss~dG~v~iw 165 (933)
T KOG1274|consen 107 SGKMIAAGSDDTAVKLLNLDDS--------------SQEKVLRGHDAPVLQLSY-------DPKGNFLAVSSCDGKVQIW 165 (933)
T ss_pred CCcEEEeecCceeEEEEecccc--------------chheeecccCCceeeeeE-------cCCCCEEEEEecCceEEEE
Confidence 9999999999999999999873 456788999999999999 9999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee--ec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY--NA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~--~~ 240 (318)
|+.++.+...+..-..... ......+..++|+ |++..|+..+.|+.|++| +..+.. +...+ +.
T Consensus 166 ~~~~~~~~~tl~~v~k~n~------~~~s~i~~~~aW~-----Pk~g~la~~~~d~~Vkvy--~r~~we--~~f~Lr~~~ 230 (933)
T KOG1274|consen 166 DLQDGILSKTLTGVDKDNE------FILSRICTRLAWH-----PKGGTLAVPPVDNTVKVY--SRKGWE--LQFKLRDKL 230 (933)
T ss_pred EcccchhhhhcccCCcccc------ccccceeeeeeec-----CCCCeEEeeccCCeEEEE--ccCCce--eheeecccc
Confidence 9999887776653322111 1113456788898 898888888889999999 544544 33344 33
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
+...+..++|+|.|.|||+++.||.|.|||..+-.. +... ..|.+++|.|+..-|
T Consensus 231 ~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~-------------~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 231 SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFK-------------RAVCCEAWKPNANAI 285 (933)
T ss_pred cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----cccc-------------ceeEEEecCCCCCee
Confidence 555689999999999999999999999999987111 2222 378899999876543
No 108
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.8e-21 Score=152.22 Aligned_cols=203 Identities=19% Similarity=0.236 Sum_probs=152.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+++||.|.+|+|+|+++...+..+.. |.+. ++++.|.+.. ....|++|+.||.|.
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll~----Hags---itaL~F~~~~----------------S~shLlS~sdDG~i~ 110 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILLS----HAGS---ITALKFYPPL----------------SKSHLLSGSDDGHII 110 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhcceec----cccc---eEEEEecCCc----------------chhheeeecCCCcEE
Confidence 3468999999999999998877665543 3333 4456666654 124899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|+... ...+..+++|.+.|+.++. .|.+++-++.+.|+.+++||+-+|+.....+...
T Consensus 111 iw~~~~--------------W~~~~slK~H~~~Vt~lsi-------HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~ 169 (362)
T KOG0294|consen 111 IWRVGS--------------WELLKSLKAHKGQVTDLSI-------HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN 169 (362)
T ss_pred EEEcCC--------------eEEeeeecccccccceeEe-------cCCCceEEEEcCCceeeeehhhcCccceeeccCC
Confidence 999987 6788999999999999999 8999999999999999999998876544332221
Q ss_pred cc-----------cccce-------e-----ee--eecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 178 VP-----------FSLLK-------E-----VV--TVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 178 ~~-----------~~~~~-------~-----~~--~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
.+ |.+.. + +. ......+.++.| -++..|++|..|+.|.+||. ....
T Consensus 170 ~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~------l~~~~L~vG~d~~~i~~~D~--ds~~- 240 (362)
T KOG0294|consen 170 KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF------LDGSELLVGGDNEWISLKDT--DSDT- 240 (362)
T ss_pred cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee------cCCceEEEecCCceEEEecc--CCCc-
Confidence 11 10000 0 00 011223455555 47889999999999999954 3444
Q ss_pred eEeeeeecccCceeEEEE--cCCCCEEEEecCCCcEEEEEecCC
Q 021036 233 DKVGSYNAHDQVVTGLAW--AFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+...+.+|...|-++.+ .|++.+|++++.||.|++||++..
T Consensus 241 -~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 241 -PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred -cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 77889999999999874 467889999999999999999764
No 109
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.9e-21 Score=156.09 Aligned_cols=215 Identities=19% Similarity=0.189 Sum_probs=149.8
Q ss_pred CccceEEeeCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCC
Q 021036 16 NTHPTVAASKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~d 93 (318)
..+.++.|.-|..|.|||+.= ....+.+.......+-.... =-......+|.-+|..+.+... .+.||+|+.|
T Consensus 191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~-----~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD 265 (463)
T KOG0270|consen 191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKK-----GKRSNSASGHTDAVLALSWNRNFRNVLASGSAD 265 (463)
T ss_pred CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhh-----cccccccccchHHHHHHHhccccceeEEecCCC
Confidence 345678899999999998754 23333333321000000000 0000112234444444444443 5899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-ee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ-KS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~ 172 (318)
.+|++||+.+++ +.+++..|.+.|.++.|+ +.....|++|+.|++|.+.|.+..... ..
T Consensus 266 ~TV~lWD~~~g~--------------p~~s~~~~~k~Vq~l~wh------~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~ 325 (463)
T KOG0270|consen 266 KTVKLWDVDTGK--------------PKSSITHHGKKVQTLEWH------PYEPSVLLSGSYDGTVALKDCRDPSNSGKE 325 (463)
T ss_pred ceEEEEEcCCCC--------------cceehhhcCCceeEEEec------CCCceEEEeccccceEEeeeccCccccCce
Confidence 999999999965 556788899999999993 455678999999999999999942211 11
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
.. -.+.|-.++|. +.....++++..||+++-+ |+|... +++.++++|.++|.++++++
T Consensus 326 wk---------------~~g~VEkv~w~----~~se~~f~~~tddG~v~~~--D~R~~~-~~vwt~~AHd~~ISgl~~n~ 383 (463)
T KOG0270|consen 326 WK---------------FDGEVEKVAWD----PHSENSFFVSTDDGTVYYF--DIRNPG-KPVWTLKAHDDEISGLSVNI 383 (463)
T ss_pred EE---------------eccceEEEEec----CCCceeEEEecCCceEEee--ecCCCC-CceeEEEeccCCcceEEecC
Confidence 11 12367788898 3456788899999999999 555543 48999999999999999998
Q ss_pred CC-CEEEEecCCCcEEEEEecCCcee
Q 021036 253 DG-CCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 253 ~~-~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.- .++++++.|++|++|++......
T Consensus 384 ~~p~~l~t~s~d~~Vklw~~~~~~~~ 409 (463)
T KOG0270|consen 384 QTPGLLSTASTDKVVKLWKFDVDSPK 409 (463)
T ss_pred CCCcceeeccccceEEEEeecCCCCc
Confidence 64 47899999999999999764443
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3e-21 Score=164.18 Aligned_cols=199 Identities=18% Similarity=0.280 Sum_probs=159.5
Q ss_pred ccceEEeeCCCceeEeecCCCC--CCCceecchhccccccccceeeee-cccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSNC--CLPLITADQYASRSAMLHSLAVAW-SPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w-~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...++++|.|-+|++|+.+.+. |+..+.. |++- +.|+++ .+.. .++|+|+-|
T Consensus 85 ~~tlIS~SsDtTVK~W~~~~~~~~c~stir~----H~DY---Vkcla~~ak~~------------------~lvaSgGLD 139 (735)
T KOG0308|consen 85 GKTLISASSDTTVKVWNAHKDNTFCMSTIRT----HKDY---VKCLAYIAKNN------------------ELVASGGLD 139 (735)
T ss_pred CCceEEecCCceEEEeecccCcchhHhhhhc----ccch---heeeeecccCc------------------eeEEecCCC
Confidence 3468999999999999998763 4444432 5554 555666 4444 899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
+.|.+||++++..-..... +......+. ++...|++++- .+.|..|++|+..+.+++||.++.+.+..
T Consensus 140 ~~IflWDin~~~~~l~~s~----n~~t~~sl~sG~k~siYSLA~-------N~t~t~ivsGgtek~lr~wDprt~~kimk 208 (735)
T KOG0308|consen 140 RKIFLWDINTGTATLVASF----NNVTVNSLGSGPKDSIYSLAM-------NQTGTIIVSGGTEKDLRLWDPRTCKKIMK 208 (735)
T ss_pred ccEEEEEccCcchhhhhhc----cccccccCCCCCccceeeeec-------CCcceEEEecCcccceEEeccccccceee
Confidence 9999999998632000000 011223333 88899999999 88889999999999999999999988888
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+.+|.. .|..+..+ +||..+++++.||+|++| ++..++ ++.++..|...|+++..+|
T Consensus 209 LrGHTd--------------NVr~ll~~-----dDGt~~ls~sSDgtIrlW--dLgqQr--Cl~T~~vH~e~VWaL~~~~ 265 (735)
T KOG0308|consen 209 LRGHTD--------------NVRVLLVN-----DDGTRLLSASSDGTIRLW--DLGQQR--CLATYIVHKEGVWALQSSP 265 (735)
T ss_pred eecccc--------------ceEEEEEc-----CCCCeEeecCCCceEEee--eccccc--eeeeEEeccCceEEEeeCC
Confidence 777665 78999999 999999999999999999 555665 7888999999999999999
Q ss_pred CCCEEEEecCCCcEEEEEecCC
Q 021036 253 DGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 253 ~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+=..+.+|+.||.|..=|+++.
T Consensus 266 sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 266 SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CcceEEecCCCCcEEecccCCc
Confidence 9889999999999999999874
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=6.1e-22 Score=163.83 Aligned_cols=218 Identities=19% Similarity=0.188 Sum_probs=169.0
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...+++|+.-.++.|||+......-...... .. -+...+++++|.++.+++..||
T Consensus 475 pdgrtLivGGeastlsiWDLAapTprikaelts--sa---------------------paCyALa~spDakvcFsccsdG 531 (705)
T KOG0639|consen 475 PDGRTLIVGGEASTLSIWDLAAPTPRIKAELTS--SA---------------------PACYALAISPDAKVCFSCCSDG 531 (705)
T ss_pred CCCceEEeccccceeeeeeccCCCcchhhhcCC--cc---------------------hhhhhhhcCCccceeeeeccCC
Confidence 456778999999999999997644211111100 00 1123334444449999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.|.|||+.+ ...++.|++|.+.+.||.. +++|..|-||+-|.+|+.||++.+..+....
T Consensus 532 nI~vwDLhn--------------q~~VrqfqGhtDGascIdi-------s~dGtklWTGGlDntvRcWDlregrqlqqhd 590 (705)
T KOG0639|consen 532 NIAVWDLHN--------------QTLVRQFQGHTDGASCIDI-------SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD 590 (705)
T ss_pred cEEEEEccc--------------ceeeecccCCCCCceeEEe-------cCCCceeecCCCccceeehhhhhhhhhhhhh
Confidence 999999997 5578999999999999999 9999999999999999999999887665433
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
. ...|.++..+ |+++++++|-.++.+.|- ..+.. ..+.+..|+.-|.++.|.+.|
T Consensus 591 F---------------~SQIfSLg~c-----P~~dWlavGMens~vevl--h~skp---~kyqlhlheScVLSlKFa~cG 645 (705)
T KOG0639|consen 591 F---------------SSQIFSLGYC-----PTGDWLAVGMENSNVEVL--HTSKP---EKYQLHLHESCVLSLKFAYCG 645 (705)
T ss_pred h---------------hhhheecccC-----CCccceeeecccCcEEEE--ecCCc---cceeecccccEEEEEEecccC
Confidence 2 2378888998 999999999999988885 33332 334566799999999999999
Q ss_pred CEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+++++.+.|..+..|.+..+.. .+.+. ...|.++..+-|.++|+||.
T Consensus 646 kwfvStGkDnlLnawrtPyGasiFqskE----------------~SsVlsCDIS~ddkyIVTGS 693 (705)
T KOG0639|consen 646 KWFVSTGKDNLLNAWRTPYGASIFQSKE----------------SSSVLSCDISFDDKYIVTGS 693 (705)
T ss_pred ceeeecCchhhhhhccCccccceeeccc----------------cCcceeeeeccCceEEEecC
Confidence 9999999999999998765543 33222 23889999999999999984
No 112
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=157.26 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=158.5
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|..+|.-+.||++|++||+++.|.+..||.+..... .+...++.+|..+|.-+.| +|+.
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----------~kl~~tlvgh~~~V~yi~w-------SPDd 281 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----------FKLKKTLVGHSQPVSYIMW-------SPDD 281 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----------eeeeeeeecccCceEEEEE-------CCCC
Confidence 557889999999999999999999999999999875432 4677889999999999999 9999
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++|++|+.|..+++||+.+|.+...+... +...+.+++|. |||..+++|+.|+.|..|++|-
T Consensus 282 ryLlaCg~~e~~~lwDv~tgd~~~~y~~~-------------~~~S~~sc~W~-----pDg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 282 RYLLACGFDEVLSLWDVDTGDLRHLYPSG-------------LGFSVSSCAWC-----PDGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred CeEEecCchHheeeccCCcchhhhhcccC-------------cCCCcceeEEc-----cCCceeEecCCCCcEEEecCCc
Confidence 99999999999999999999887765432 23478899999 9999999999999999996653
Q ss_pred CCCeeeEeeeeecc-cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 228 SCNKFDKVGSYNAH-DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 228 ~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+ ....+++- ...|.+++.++||+++++...|..|++++..+.....+.... .+|++.+.
T Consensus 344 n-----~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~---------------~~its~~i 403 (519)
T KOG0293|consen 344 N-----ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE---------------QPITSFSI 403 (519)
T ss_pred c-----hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc---------------CceeEEEE
Confidence 2 23334432 256899999999999999999999999998775544222222 28899999
Q ss_pred cCCCcEEEE
Q 021036 307 SPGNLVVAM 315 (318)
Q Consensus 307 sp~~~~l~~ 315 (318)
|.||+++++
T Consensus 404 S~d~k~~Lv 412 (519)
T KOG0293|consen 404 SKDGKLALV 412 (519)
T ss_pred cCCCcEEEE
Confidence 999998765
No 113
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.88 E-value=3.7e-21 Score=153.96 Aligned_cols=191 Identities=17% Similarity=0.278 Sum_probs=146.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++... ++.|++|+.||.+++||.. ++....+.+|.++|.+++|.-.. +....|++++
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~---------------Gk~~~~~~Ght~~ik~v~~v~~n----~~~~~fvsas 166 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLK---------------GKSIKTIVGHTGPIKSVAWVIKN----SSSCLFVSAS 166 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecC---------------CceEEEEecCCcceeeeEEEecC----CccceEEEec
Confidence 5555554 5899999999999999998 45677889999999999883221 1223699999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec--------
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-------- 226 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-------- 226 (318)
.|.++++|..+.+........ ...+|...|.+++.. ++|..+++|+.|..|++|+..
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~----------~~~GHk~~V~sVsv~-----~sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALK----------VCRGHKRSVDSVSVD-----SSGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred CCceEEEEEecCchhhhhHHh----------HhcccccceeEEEec-----CCCCeEEeecccceeeecccCCCcccccc
Confidence 999999999987754432211 113678899999998 999999999999999999711
Q ss_pred -------------cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcccccc
Q 021036 227 -------------ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 227 -------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 293 (318)
...+...++..+.+|.++|.++.|++ ...+++++.|-+|+.||+.++........+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--------- 301 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--------- 301 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---------
Confidence 11122346677899999999999998 5679999999999999999877654333332
Q ss_pred CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.+++++.+|...+||+|.
T Consensus 302 ------sl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 302 ------SLNCISYSPLSKLLASGS 319 (423)
T ss_pred ------ceeEeecccccceeeecC
Confidence 567888888888887763
No 114
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1.8e-20 Score=153.76 Aligned_cols=262 Identities=16% Similarity=0.122 Sum_probs=177.3
Q ss_pred EeeCCCc-eeEeecCCCCCCCceecc-hhccccc-c------c-------cceeeeecccccCC---CCcccccccCCCC
Q 021036 22 AASKSKG-NSITKIPSNCCLPLITAD-QYASRSA-M------L-------HSLAVAWSPVLRLS---SKKYPVPQNGSSN 82 (318)
Q Consensus 22 t~s~d~~-i~iwd~~~~~~~~~~~~~-~~~~~~~-~------~-------~~~~~~w~p~~~~~---~~~~~v~~~~~s~ 82 (318)
++|.|.. +.+||+.++...-.+... ...+.+. . + ......|.+..... .--++|.++.-++
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n 91 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTALNNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSN 91 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhhhchhheeeecccCccccccccCchhhhhhhcccccceeeeecCC
Confidence 3455544 899999998765544332 1111110 0 0 01122333333222 1234689999999
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|.+|+.|+..|.|++|.+.+|. ++..+.+|-..|+|+.| +.+|.+|+||+.||.|.+|
T Consensus 92 ~G~~l~ag~i~g~lYlWelssG~--------------LL~v~~aHYQ~ITcL~f-------s~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 92 LGYFLLAGTISGNLYLWELSSGI--------------LLNVLSAHYQSITCLKF-------SDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred CceEEEeecccCcEEEEEecccc--------------HHHHHHhhccceeEEEE-------eCCCcEEEecCCCccEEEE
Confidence 99999999999999999999965 55678899999999999 9999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
++..- +.....+ ..........|.-+|+++...+. +....+++++.|.++++| |+..+. .+.++. ..
T Consensus 151 ~l~~l--v~a~~~~---~~~p~~~f~~HtlsITDl~ig~G---g~~~rl~TaS~D~t~k~w--dlS~g~--LLlti~-fp 217 (476)
T KOG0646|consen 151 LLTDL--VSADNDH---SVKPLHIFSDHTLSITDLQIGSG---GTNARLYTASEDRTIKLW--DLSLGV--LLLTIT-FP 217 (476)
T ss_pred EEEee--cccccCC---CccceeeeccCcceeEEEEecCC---CccceEEEecCCceEEEE--Eeccce--eeEEEe-cC
Confidence 87531 1101100 00111334556668999998721 134689999999999999 566665 444443 56
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCC--CCccccccCCCcce--eeeEEEEcCCCcEEEEEe
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNT--PGLQSCTDLPDAFV--SCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~--~v~~v~~sp~~~~l~~~~ 317 (318)
..+.+++.+|.++.++.|+.+|.|.+.++..-.-......... ........+.+|.+ .|++++.+-||..|++|+
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd 296 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD 296 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC
Confidence 7899999999999999999999999998865221111000000 00001123457777 999999999999999986
No 115
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=8.7e-20 Score=143.07 Aligned_cols=188 Identities=12% Similarity=0.134 Sum_probs=146.8
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
-...|.+++++.+|.++++++.|-+++|||..++ +.++++..+.-.|..++| ......+
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g--------------~~~~ti~skkyG~~~~~F-------th~~~~~ 71 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG--------------KQVKTINSKKYGVDLACF-------THHSNTV 71 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC--------------ceeeEeecccccccEEEE-------ecCCceE
Confidence 3467788888888899999999999999999985 466778777788999999 5555556
Q ss_pred EEEeC--CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 151 VTGSS--DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 151 ~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+.++. |.+|+..++.+.+.+..+.+|.. .|+.|+.+ |-++.|++++.|++|++|| ++
T Consensus 72 i~sStk~d~tIryLsl~dNkylRYF~GH~~--------------~V~sL~~s-----P~~d~FlS~S~D~tvrLWD--lR 130 (311)
T KOG1446|consen 72 IHSSTKEDDTIRYLSLHDNKYLRYFPGHKK--------------RVNSLSVS-----PKDDTFLSSSLDKTVRLWD--LR 130 (311)
T ss_pred EEccCCCCCceEEEEeecCceEEEcCCCCc--------------eEEEEEec-----CCCCeEEecccCCeEEeeE--ec
Confidence 66665 88999999999999998887776 89999999 8889999999999999995 55
Q ss_pred CCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC---CceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 229 CNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG---NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 229 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
..+ +...+..... ..++|+|.|-++|++.....|++||++. +....+..... -....+.+.
T Consensus 131 ~~~--cqg~l~~~~~--pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~------------~~~ew~~l~ 194 (311)
T KOG1446|consen 131 VKK--CQGLLNLSGR--PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDN------------DEAEWTDLE 194 (311)
T ss_pred CCC--CceEEecCCC--cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCC------------CccceeeeE
Confidence 444 2223322223 3478999999999998888999999986 33334433311 123788999
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
|||||++|+.+
T Consensus 195 FS~dGK~iLls 205 (311)
T KOG1446|consen 195 FSPDGKSILLS 205 (311)
T ss_pred EcCCCCEEEEE
Confidence 99999987754
No 116
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.4e-21 Score=148.40 Aligned_cols=208 Identities=18% Similarity=0.172 Sum_probs=142.8
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
..|+.|++.|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|.+++| +++|+.|+|+|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T--------------~~iar~lsaH~~pi~sl~W-------S~dgr~LltsS 84 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT--------------FRIARMLSAHVRPITSLCW-------SRDGRKLLTSS 84 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc--------------cchhhhhhccccceeEEEe-------cCCCCEeeeec
Confidence 34556666669999999999999999998 4455678999999999999 99999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccce-----------------eeeeec---------------ccceeEEEEeec
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLK-----------------EVVTVN---------------TVPISVLSLILP 202 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~---------------~~~v~~l~~~~~ 202 (318)
.|..+++||+..|.+++.+.....-+.... .+.... .....+..|.
T Consensus 85 ~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd-- 162 (405)
T KOG1273|consen 85 RDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD-- 162 (405)
T ss_pred CCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccccccccccccc--
Confidence 999999999999988776543221110000 000000 0011122233
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee--ee
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS--QV 279 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~ 279 (318)
+.|+++++|...|.+.+| +..+.+ .+..++--. ..|..+.++..|++|+.-+.|+.||.|+++.-... .-
T Consensus 163 ---r~g~yIitGtsKGkllv~--~a~t~e--~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~ 235 (405)
T KOG1273|consen 163 ---RRGKYIITGTSKGKLLVY--DAETLE--CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDG 235 (405)
T ss_pred ---CCCCEEEEecCcceEEEE--ecchhe--eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccC
Confidence 779999999999999999 555554 666666544 67889999999999999999999999998630000 00
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
...+... ..++ .....-.++.|+.||.|++.+.
T Consensus 236 e~e~~~K----~qDv-VNk~~Wk~ccfs~dgeYv~a~s 268 (405)
T KOG1273|consen 236 EVEPEHK----LQDV-VNKLQWKKCCFSGDGEYVCAGS 268 (405)
T ss_pred CcChhHH----HHHH-HhhhhhhheeecCCccEEEecc
Confidence 0000000 0000 0012446889999999988763
No 117
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.86 E-value=9.4e-21 Score=156.89 Aligned_cols=184 Identities=15% Similarity=0.179 Sum_probs=147.1
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.+|...++|+.|++|+.-.++.|||+.... .+....+..-.-..+.++. +++.+..++++
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapT------------prikaeltssapaCyALa~-------spDakvcFscc 528 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPT------------PRIKAELTSSAPACYALAI-------SPDAKVCFSCC 528 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCC------------cchhhhcCCcchhhhhhhc-------CCccceeeeec
Confidence 4445555566999999999999999998754 2233334443456778888 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|.|||+.+...+..+.+|.. .+.||.++ ++|..|.+|+-|++|+-| |++.++ .
T Consensus 529 sdGnI~vwDLhnq~~VrqfqGhtD--------------GascIdis-----~dGtklWTGGlDntvRcW--Dlregr--q 585 (705)
T KOG0639|consen 529 SDGNIAVWDLHNQTLVRQFQGHTD--------------GASCIDIS-----KDGTKLWTGGLDNTVRCW--DLREGR--Q 585 (705)
T ss_pred cCCcEEEEEcccceeeecccCCCC--------------CceeEEec-----CCCceeecCCCccceeeh--hhhhhh--h
Confidence 999999999999999999988776 88999999 999999999999999999 666655 2
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+.. ......|.++.++|.+.+++.|-+++.+.+-........++.. |...|.++.|++.|++++
T Consensus 586 lqq-hdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl---------------heScVLSlKFa~cGkwfv 649 (705)
T KOG0639|consen 586 LQQ-HDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL---------------HESCVLSLKFAYCGKWFV 649 (705)
T ss_pred hhh-hhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecc---------------cccEEEEEEecccCceee
Confidence 222 1234689999999999999999999999887766554444333 445999999999999998
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
+.
T Consensus 650 St 651 (705)
T KOG0639|consen 650 ST 651 (705)
T ss_pred ec
Confidence 75
No 118
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.86 E-value=8.5e-21 Score=153.39 Aligned_cols=194 Identities=22% Similarity=0.327 Sum_probs=148.9
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL 87 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l 87 (318)
++.+++-.... +++|+.|.+++.||+....|...+.... ...+ +.-+ ...+
T Consensus 265 t~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S-----~cnD---I~~~--------------------~~~~ 315 (459)
T KOG0288|consen 265 TAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGS-----QCND---IVCS--------------------ISDV 315 (459)
T ss_pred eeehhhccccc-eeeccccchhhhhhhhhhheeccccccc-----cccc---eEec--------------------ceee
Confidence 33444433333 8999999999999999988866654321 1111 2111 2678
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++|..|++|++||..++. .......+. .|+++.. +.++..|++++.|.++.+.|+++.
T Consensus 316 ~SgH~DkkvRfwD~Rs~~--------------~~~sv~~gg-~vtSl~l-------s~~g~~lLsssRDdtl~viDlRt~ 373 (459)
T KOG0288|consen 316 ISGHFDKKVRFWDIRSAD--------------KTRSVPLGG-RVTSLDL-------SMDGLELLSSSRDDTLKVIDLRTK 373 (459)
T ss_pred eecccccceEEEeccCCc--------------eeeEeecCc-ceeeEee-------ccCCeEEeeecCCCceeeeecccc
Confidence 999999999999998854 445565554 9999999 999999999999999999999998
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
+....+..... ..++ ..+.+.|+ |++.++++|+.||.|+|| +..+++.+.+.........|++
T Consensus 374 eI~~~~sA~g~--------k~as--DwtrvvfS-----pd~~YvaAGS~dgsv~iW--~v~tgKlE~~l~~s~s~~aI~s 436 (459)
T KOG0288|consen 374 EIRQTFSAEGF--------KCAS--DWTRVVFS-----PDGSYVAAGSADGSVYIW--SVFTGKLEKVLSLSTSNAAITS 436 (459)
T ss_pred cEEEEeecccc--------cccc--ccceeEEC-----CCCceeeeccCCCcEEEE--EccCceEEEEeccCCCCcceEE
Confidence 87777654431 1222 47888999 999999999999999999 6678876555444433447999
Q ss_pred EEEcCCCCEEEEecCCCcEEEE
Q 021036 248 LAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d~~v~iw 269 (318)
++|+|.|..|++++.++.+.+|
T Consensus 437 ~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 437 LSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EEEcCCCchhhcccCCcceEec
Confidence 9999999999999999999999
No 119
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.8e-22 Score=169.89 Aligned_cols=175 Identities=26% Similarity=0.433 Sum_probs=149.2
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++.+++|+.|..+.+|.+.... .+..+.+|..+|.++.| .....+|++|+.+|+|++||
T Consensus 40 ~r~~~~Gg~~~k~~L~~i~kp~--------------~i~S~~~hespIeSl~f-------~~~E~LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 40 SRSLVTGGEDEKVNLWAIGKPN--------------AITSLTGHESPIESLTF-------DTSERLLAAGSASGTIKVWD 98 (825)
T ss_pred ceeeccCCCceeeccccccCCc--------------hhheeeccCCcceeeec-------CcchhhhcccccCCceeeee
Confidence 4899999999999999998754 34568999999999999 88889999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
++..+.+.++.+|.. .+..+.|+ |-+.++|.|+.|+.+++| |.+..- +.+.+.+|..
T Consensus 99 leeAk~vrtLtgh~~--------------~~~sv~f~-----P~~~~~a~gStdtd~~iw--D~Rk~G--c~~~~~s~~~ 155 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLL--------------NITSVDFH-----PYGEFFASGSTDTDLKIW--DIRKKG--CSHTYKSHTR 155 (825)
T ss_pred hhhhhhhhhhhcccc--------------Ccceeeec-----cceEEeccccccccceeh--hhhccC--ceeeecCCcc
Confidence 999888887766654 78889999 999999999999999999 554333 6778889999
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+..+.|+|+|++++.+++|.+++|||+..+++.. ++..|.+.+.++.|+|..-.+++|
T Consensus 156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~--------------ef~~~e~~v~sle~hp~e~Lla~G 214 (825)
T KOG0267|consen 156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK--------------EFKSHEGKVQSLEFHPLEVLLAPG 214 (825)
T ss_pred eeEEEeecCCCceeeccCCcceeeeeccccccccc--------------ccccccccccccccCchhhhhccC
Confidence 99999999999999999999999999998877663 444566677888888876666655
No 120
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.1e-19 Score=133.94 Aligned_cols=229 Identities=15% Similarity=0.197 Sum_probs=161.8
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCC----CCccEEEEec-CC
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSS----NWFSILAVGG-RS 93 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s----~~~~~l~~g~-~d 93 (318)
.+++||+|++|++.-++...+...-.. + .+.-|.+.|.+++|- ..+.+|++++ .|
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~d--------------l------e~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHD--------------L------EFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcc--------------e------eeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 368899999999987666554322111 1 111122333333331 1246676654 45
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
..|++-|..++ +....+.+|.+.|.++- +-++-.+++|+.|.+|++||++-..++.++
T Consensus 163 c~iy~tdc~~g--------------~~~~a~sghtghilaly--------swn~~m~~sgsqdktirfwdlrv~~~v~~l 220 (350)
T KOG0641|consen 163 CKIYITDCGRG--------------QGFHALSGHTGHILALY--------SWNGAMFASGSQDKTIRFWDLRVNSCVNTL 220 (350)
T ss_pred ceEEEeecCCC--------------CcceeecCCcccEEEEE--------EecCcEEEccCCCceEEEEeeeccceeeec
Confidence 66666676664 46678899999988762 347789999999999999999988887765
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
...... .......|..+++. |.|++|++|-.|...-+| |++.++ +++.+..|...|.++.|+|.
T Consensus 221 ~~~~~~-------~glessavaav~vd-----psgrll~sg~~dssc~ly--dirg~r--~iq~f~phsadir~vrfsp~ 284 (350)
T KOG0641|consen 221 DNDFHD-------GGLESSAVAAVAVD-----PSGRLLASGHADSSCMLY--DIRGGR--MIQRFHPHSADIRCVRFSPG 284 (350)
T ss_pred cCcccC-------CCcccceeEEEEEC-----CCcceeeeccCCCceEEE--EeeCCc--eeeeeCCCccceeEEEeCCC
Confidence 432110 01123478899999 999999999999999999 677887 88899999999999999999
Q ss_pred CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..++++++.|..|++=|+.+....+++.- -..+|...+..+.|+|+.-.+++
T Consensus 285 a~yllt~syd~~ikltdlqgdla~el~~~----------vv~ehkdk~i~~rwh~~d~sfis 336 (350)
T KOG0641|consen 285 AHYLLTCSYDMKIKLTDLQGDLAHELPIM----------VVAEHKDKAIQCRWHPQDFSFIS 336 (350)
T ss_pred ceEEEEecccceEEEeecccchhhcCceE----------EEEeccCceEEEEecCccceeee
Confidence 99999999999999999987543332211 01125567788899997654444
No 121
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.85 E-value=1.2e-19 Score=141.36 Aligned_cols=176 Identities=14% Similarity=0.202 Sum_probs=129.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
..++++|+-||+||+|+++.... . .-+....|.++|.+++| +.+|..+++|+.|+.+++||
T Consensus 40 ~~~~~A~SWD~tVR~wevq~~g~-----------~-~~ka~~~~~~PvL~v~W-------sddgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 40 DNLLAAGSWDGTVRIWEVQNSGQ-----------L-VPKAQQSHDGPVLDVCW-------SDDGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred CceEEecccCCceEEEEEecCCc-----------c-cchhhhccCCCeEEEEE-------ccCCceEEeeccCCceEEEE
Confidence 57888999999999999987321 1 11456679999999999 99999999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc--eEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL--MLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
+.+++.... ..|..+|..+.|- +.. .+|++|+.|.+|+.| |++... ++.++. -
T Consensus 101 L~S~Q~~~v---------------~~Hd~pvkt~~wv-----~~~~~~cl~TGSWDKTlKfW--D~R~~~--pv~t~~-L 155 (347)
T KOG0647|consen 101 LASGQVSQV---------------AAHDAPVKTCHWV-----PGMNYQCLVTGSWDKTLKFW--DTRSSN--PVATLQ-L 155 (347)
T ss_pred ccCCCeeee---------------eecccceeEEEEe-----cCCCcceeEecccccceeec--ccCCCC--eeeeee-c
Confidence 999965442 3466689999997 444 489999999999999 677665 666654 3
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEeC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQI 318 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~~ 318 (318)
.+.++++..- ..+++.+..++.|.+|+++++..+ .....+..- .+++|+..+|....|.|.|
T Consensus 156 PeRvYa~Dv~--~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~-------------Q~R~va~f~d~~~~alGsi 218 (347)
T KOG0647|consen 156 PERVYAADVL--YPMAVVATAERHIAVYNLENPPTEFKRIESPLKW-------------QTRCVACFQDKDGFALGSI 218 (347)
T ss_pred cceeeehhcc--CceeEEEecCCcEEEEEcCCCcchhhhhcCcccc-------------eeeEEEEEecCCceEeeee
Confidence 4566666543 557888889999999999764332 111122111 4577777776665565543
No 122
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3.9e-19 Score=139.31 Aligned_cols=209 Identities=18% Similarity=0.242 Sum_probs=145.4
Q ss_pred eecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeec
Q 021036 61 AWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLS 140 (318)
Q Consensus 61 ~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 140 (318)
.+.|.-.+..|.+++++++++ +.++|+|+.|-+|+|||+... ..+..+..|.+.|+++.|
T Consensus 32 ~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~--------------~qlg~ll~HagsitaL~F---- 91 (362)
T KOG0294|consen 32 TLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR--------------KQLGILLSHAGSITALKF---- 91 (362)
T ss_pred eeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch--------------hhhcceeccccceEEEEe----
Confidence 334555677899999999986 599999999999999999873 456678889999999999
Q ss_pred CCCCCCC--cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC
Q 021036 141 SDSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG 218 (318)
Q Consensus 141 ~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg 218 (318)
.+.. ..|++|+.||.|.+|+...-.++..++.|. +.|+.++++ |.+++.++.+.|+
T Consensus 92 ---~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~--------------~~Vt~lsiH-----PS~KLALsVg~D~ 149 (362)
T KOG0294|consen 92 ---YPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHK--------------GQVTDLSIH-----PSGKLALSVGGDQ 149 (362)
T ss_pred ---cCCcchhheeeecCCCcEEEEEcCCeEEeeeecccc--------------cccceeEec-----CCCceEEEEcCCc
Confidence 3333 279999999999999999888888877655 479999999 9999999999999
Q ss_pred cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC---------CCCCc-
Q 021036 219 SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT---------NTPGL- 288 (318)
Q Consensus 219 ~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~---------~~~~~- 288 (318)
.+++|+ +-.++...+..+. +. .+.+.|+|.|.+++.++.+ .|-+|.+.+-.+......+ +...+
T Consensus 150 ~lr~WN--LV~Gr~a~v~~L~-~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~ 223 (362)
T KOG0294|consen 150 VLRTWN--LVRGRVAFVLNLK-NK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLDGSELL 223 (362)
T ss_pred eeeeeh--hhcCccceeeccC-Cc--ceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecCCceEE
Confidence 999995 4344322333332 22 2337777777766655544 4556665432221111000 00001
Q ss_pred ccc----------------ccCCCcceeeeEEEEc--CCCcEEEEEe
Q 021036 289 QSC----------------TDLPDAFVSCLGMAVS--PGNLVVAMVQ 317 (318)
Q Consensus 289 ~~~----------------~~~~~h~~~v~~v~~s--p~~~~l~~~~ 317 (318)
.|. ..+.+|..+|.++.+- |++.+|+++.
T Consensus 224 vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 224 VGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEec
Confidence 111 1244788899988843 5778888763
No 123
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=1e-19 Score=141.45 Aligned_cols=217 Identities=16% Similarity=0.241 Sum_probs=151.6
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCC--CceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEE
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCL--PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSIL 87 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l 87 (318)
........-+++|+.||.+.+||++..... ..+.++ +. |+ -....-.+|.+.|.++-+-| +..++
T Consensus 50 ~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k---~~-------c~--v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 50 QIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAK---HK-------CI--VAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred eeccccceEEeecCCCccEEEEEeccccchhhccceeh---ee-------ee--ccccCCccceeeeeeeEEeeecCcee
Confidence 344445566899999999999999864311 111110 00 11 00011223555555554444 25788
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
.+++.|.++++||.++- +....|+ ..+.|++-++.|... .--++++|..|-.|++.|+.+|
T Consensus 118 tssSFDhtlKVWDtnTl--------------Q~a~~F~-me~~VYshamSp~a~----sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTL--------------QEAVDFK-MEGKVYSHAMSPMAM----SHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ecccccceEEEeecccc--------------eeeEEee-cCceeehhhcChhhh----cceEEEEecCCCcEEEEeccCC
Confidence 99999999999999983 3334443 356788888866542 2247888889999999999999
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee----------E-ee
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD----------K-VG 236 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~----------~-~~ 236 (318)
..-+++.+|.. .|.++.|+ |...-.|++|+.||.|++||+....+-+. + +.
T Consensus 179 s~sH~LsGHr~--------------~vlaV~Ws----p~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 179 SFSHTLSGHRD--------------GVLAVEWS----PSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred cceeeeccccC--------------ceEEEEec----cCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 99888877765 89999999 34556789999999999997654322211 1 11
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
.-.+|.+.|..++|+.++.++++++.|..+++|+...+..
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRN 280 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCcc
Confidence 2346888999999999999999999999999999876443
No 124
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.8e-20 Score=148.87 Aligned_cols=197 Identities=20% Similarity=0.162 Sum_probs=148.6
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
..+.+++||.|++|++||+.++++...+.. |... +.++.|+|.. ..+|++|+.|++
T Consensus 255 ~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~----~~k~---Vq~l~wh~~~-----------------p~~LLsGs~D~~ 310 (463)
T KOG0270|consen 255 FRNVLASGSADKTVKLWDVDTGKPKSSITH----HGKK---VQTLEWHPYE-----------------PSVLLSGSYDGT 310 (463)
T ss_pred cceeEEecCCCceEEEEEcCCCCcceehhh----cCCc---eeEEEecCCC-----------------ceEEEeccccce
Confidence 357789999999999999999998777763 3444 4459999987 689999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc-ceeeeec
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSAE 174 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~ 174 (318)
|.+.|.+..... -..+ ...+.|-.+.|.|++. ..++++..||+|+-+|+|+. +++.++.
T Consensus 311 V~l~D~R~~~~s-------------~~~w-k~~g~VEkv~w~~~se------~~f~~~tddG~v~~~D~R~~~~~vwt~~ 370 (463)
T KOG0270|consen 311 VALKDCRDPSNS-------------GKEW-KFDGEVEKVAWDPHSE------NSFFVSTDDGTVYYFDIRNPGKPVWTLK 370 (463)
T ss_pred EEeeeccCcccc-------------CceE-EeccceEEEEecCCCc------eeEEEecCCceEEeeecCCCCCceeEEE
Confidence 999999853321 1122 2356899999955543 35888899999999999975 6777766
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG 254 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 254 (318)
.|. .+|++|+++ +....++++++.|+.|++|+++....+....+.++ -+...|.++.|+-
T Consensus 371 AHd--------------~~ISgl~~n----~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~--~~rl~c~~~~~~~ 430 (463)
T KOG0270|consen 371 AHD--------------DEISGLSVN----IQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK--LGRLHCFALDPDV 430 (463)
T ss_pred ecc--------------CCcceEEec----CCCCcceeeccccceEEEEeecCCCCccccccccc--ccceeecccCCCc
Confidence 554 499999998 35578999999999999998776655422222222 1335677788874
Q ss_pred C-EEEEecCCCcEEEEEecCCce
Q 021036 255 C-CLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 255 ~-~l~s~~~d~~v~iwd~~~~~~ 276 (318)
. +++.|+..+.+++||+.+...
T Consensus 431 a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 431 AFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ceEEEecCccceEEEeecccChh
Confidence 4 678899999999999976543
No 125
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.84 E-value=3.7e-20 Score=157.48 Aligned_cols=100 Identities=21% Similarity=0.228 Sum_probs=82.1
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCC---eeeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceee
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCN---KFDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
|+|-|...||+++.||.|++|.+..... ...+...+..|...|+++.|+|- ...|++++.|-+|++||+++.....
T Consensus 635 WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~ 714 (1012)
T KOG1445|consen 635 WDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS 714 (1012)
T ss_pred cCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh
Confidence 4467889999999999999996643322 12345567889999999999994 5689999999999999999876652
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+.+|.+.|.+++|||||+.+|++
T Consensus 715 --------------~l~gHtdqIf~~AWSpdGr~~AtV 738 (1012)
T KOG1445|consen 715 --------------RLVGHTDQIFGIAWSPDGRRIATV 738 (1012)
T ss_pred --------------eeccCcCceeEEEECCCCcceeee
Confidence 456688899999999999999986
No 126
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.84 E-value=2.9e-20 Score=148.10 Aligned_cols=200 Identities=16% Similarity=0.191 Sum_probs=153.0
Q ss_pred CCCCcccccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|.--|.+++-.|.. ..+++|+.||.|+|||+.+-+ ...++++|.+.|..|++ ..
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--------------~~~~f~AH~G~V~Gi~v-------~~- 119 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--------------CIRTFKAHEGLVRGICV-------TQ- 119 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--------------hhheeecccCceeeEEe-------cc-
Confidence 56677778888888875 789999999999999999844 56789999999999999 44
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..+++++.|.+|+.|.+.. ...+++.+.. .+..+.-+ ..+..|++++. .|.|||
T Consensus 120 -~~~~tvgdDKtvK~wk~~~-~p~~tilg~s---------------~~~gIdh~-----~~~~~FaTcGe--~i~IWD-- 173 (433)
T KOG0268|consen 120 -TSFFTVGDDKTVKQWKIDG-PPLHTILGKS---------------VYLGIDHH-----RKNSVFATCGE--QIDIWD-- 173 (433)
T ss_pred -cceEEecCCcceeeeeccC-Ccceeeeccc---------------cccccccc-----cccccccccCc--eeeecc--
Confidence 5699999999999999875 3444444332 45566665 56778888864 689994
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCcee----------eeecCCCCCCcc-cccc-
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQ-SCTD- 293 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~-~~~~- 293 (318)
.+... ++..+.-....|.++.|+|-.. .|++++.|+.|.+||++..... .+.++|+...+. +..+
T Consensus 174 ~~R~~--Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~ 251 (433)
T KOG0268|consen 174 EQRDN--PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDH 251 (433)
T ss_pred cccCC--ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccc
Confidence 44444 7777877778899999999755 7788889999999999875442 345556433332 3222
Q ss_pred ----------------CCCcceeeeEEEEcCCCcEEEEEe
Q 021036 294 ----------------LPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 294 ----------------~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+|.+.|.+|+|||.|+-+++|.
T Consensus 252 nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs 291 (433)
T KOG0268|consen 252 NLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS 291 (433)
T ss_pred cceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc
Confidence 238999999999999999888874
No 127
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=2.2e-19 Score=140.99 Aligned_cols=192 Identities=16% Similarity=0.201 Sum_probs=157.5
Q ss_pred ccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC
Q 021036 64 PVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 64 p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 143 (318)
|..++.+|...|.++++-..|+.+++++.|.+..+||+++++ ++..+.+|....+.++-
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge--------------~v~~LtGHd~ELtHcst------- 322 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE--------------VVNILTGHDSELTHCST------- 322 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc--------------eeccccCcchhcccccc-------
Confidence 445688899999999999999999999999999999999954 67889999999998888
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
.|..+++++++.|.+.++||++.. ..+..|.+|. ..|++..|. .+..+++|+.|.+|++
T Consensus 323 HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHt--------------dtVTS~vF~------~dd~vVSgSDDrTvKv 382 (481)
T KOG0300|consen 323 HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHT--------------DTVTSVVFN------TDDRVVSGSDDRTVKV 382 (481)
T ss_pred CCcceEEEEeccCceeEeccchhhcceeeeecccc--------------cceeEEEEe------cCCceeecCCCceEEE
Confidence 788999999999999999999832 3344455544 489999996 5678999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
|| +++.+ .++.++. -..++..++.+..+..|+.--.+..|++||+++..+..++.... .+|..-|.
T Consensus 383 Wd--LrNMR-splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsR----------qgHrRMV~ 448 (481)
T KOG0300|consen 383 WD--LRNMR-SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSR----------QGHRRMVT 448 (481)
T ss_pred ee--ecccc-Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccc----------cccceeee
Confidence 95 44433 2666665 45678899999888899999899999999999877776653332 35888899
Q ss_pred EEEEcCCC
Q 021036 303 GMAVSPGN 310 (318)
Q Consensus 303 ~v~~sp~~ 310 (318)
+++|..+.
T Consensus 449 c~AW~eeh 456 (481)
T KOG0300|consen 449 CCAWLEEH 456 (481)
T ss_pred eeeccccC
Confidence 99998653
No 128
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=2.2e-20 Score=147.00 Aligned_cols=224 Identities=17% Similarity=0.251 Sum_probs=150.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+-+.+.+.++++|+|.++|+|++++..|+..+. +..+|...|++++++.+|.+|++++
T Consensus 143 ~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG----------------------G~egHrdeVLSvD~~~~gd~i~ScG 200 (385)
T KOG1034|consen 143 FHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG----------------------GVEGHRDEVLSVDFSLDGDRIASCG 200 (385)
T ss_pred cCCCCCcEEEEecCCceEEEEeccCCeEEEEec----------------------ccccccCcEEEEEEcCCCCeeeccC
Confidence 334444568999999999999999998865553 3444555555555555569999999
Q ss_pred CCCcEEEEEccCCccccccccc-----------cCCceeEEe---eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC
Q 021036 92 RSGKVSLWRICVPKCYSVEDCK-----------VPTTAVLIG---LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG 157 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~-----------~~~~~~~~~---~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~ 157 (318)
.|.++++|++..++.....+.. ++......- +-.-|...|.|++| -|+++++-+.++
T Consensus 201 mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw---------~gd~ilSkscen 271 (385)
T KOG1034|consen 201 MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRW---------FGDFILSKSCEN 271 (385)
T ss_pred CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHH---------HhhheeecccCc
Confidence 9999999999865543322111 111111111 22458899999999 568999999999
Q ss_pred cEEEEECC-CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 158 SVRIWDGY-IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 158 ~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.|..|... -++........+...+.+.++ ......+.-+.|.++ |-++.||.|...|.|++||++..... ...
T Consensus 272 aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~-~~~~c~iWfirf~~d---~~~~~la~gnq~g~v~vwdL~~~ep~--~~t 345 (385)
T KOG1034|consen 272 AIVCWKPGKLEESIHNVKPPESATTILGEF-DYPMCDIWFIRFAFD---PWQKMLALGNQSGKVYVWDLDNNEPP--KCT 345 (385)
T ss_pred eEEEEecchhhhhhhccCCCccceeeeeEe-ccCccceEEEEEeec---HHHHHHhhccCCCcEEEEECCCCCCc--cCc
Confidence 99999873 222222222222222222221 223345666776643 56799999999999999966543331 222
Q ss_pred eeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 237 SYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 237 ~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
++.. ....|...+|+.||.+|+...+|++|.-||..
T Consensus 346 tl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 346 TLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred eEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 3322 34578999999999999999999999999864
No 129
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.83 E-value=3.9e-19 Score=152.49 Aligned_cols=210 Identities=17% Similarity=0.198 Sum_probs=160.8
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhc-------cccc----cccceeeeecccc---cCCCCccccc
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYA-------SRSA----MLHSLAVAWSPVL---RLSSKKYPVP 76 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~-------~~~~----~~~~~~~~w~p~~---~~~~~~~~v~ 76 (318)
.+.+.+...+++|+.|+++.+|...+..-+..+..++.. ..+. ..+.+...|-+.. .+++|..+|.
T Consensus 65 ~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 65 CYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGELVYSLQGHTASVW 144 (745)
T ss_pred eeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchhhhcccCCcchhee
Confidence 444566777999999999999988776555544332210 1111 1122345565432 2789999999
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.+..-+++ .++||+.|.+|++|.-.+ .++++.+|.+.|+.+++ -++ ..|++|+.|
T Consensus 145 Av~~l~e~-~~vTgsaDKtIklWk~~~----------------~l~tf~gHtD~VRgL~v-------l~~-~~flScsND 199 (745)
T KOG0301|consen 145 AVASLPEN-TYVTGSADKTIKLWKGGT----------------LLKTFSGHTDCVRGLAV-------LDD-SHFLSCSND 199 (745)
T ss_pred eeeecCCC-cEEeccCcceeeeccCCc----------------hhhhhccchhheeeeEE-------ecC-CCeEeecCC
Confidence 99999888 889999999999998743 66899999999999999 444 259999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
|.|++|++ +|+++....+|+. -+++++.. .++..+++++.|+++++|+.+ + +.+
T Consensus 200 g~Ir~w~~-~ge~l~~~~ghtn--------------~vYsis~~-----~~~~~Ivs~gEDrtlriW~~~----e--~~q 253 (745)
T KOG0301|consen 200 GSIRLWDL-DGEVLLEMHGHTN--------------FVYSISMA-----LSDGLIVSTGEDRTLRIWKKD----E--CVQ 253 (745)
T ss_pred ceEEEEec-cCceeeeeeccce--------------EEEEEEec-----CCCCeEEEecCCceEEEeecC----c--eEE
Confidence 99999999 6777777766654 78888876 788999999999999999533 2 555
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+.-....|+++.+-++|. |++|+.||.||||...
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 5554455899999988886 7889999999999876
No 130
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.83 E-value=3.7e-19 Score=142.54 Aligned_cols=160 Identities=19% Similarity=0.243 Sum_probs=114.0
Q ss_pred CCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
+|...|-++.+||. ...|++|+.||+|+|||++.+.. +.....+.|.+.|+.|.| +..-.
T Consensus 255 gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~------------~~~~~~kAh~sDVNVISW-------nr~~~ 315 (440)
T KOG0302|consen 255 GHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK------------KAAVSTKAHNSDVNVISW-------NRREP 315 (440)
T ss_pred ccccchhhhccCCccCceEEeeecCceEEEEEecCCCc------------cceeEeeccCCceeeEEc-------cCCcc
Confidence 34444444444443 68999999999999999998631 222344899999999999 66666
Q ss_pred EEEEEeCCCcEEEEECCCcc---eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQE---LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+|++|+.||+++|||+++-+ .+..+ ..|..+|+++.|+ |.+...|++++.|.+|.+||+
T Consensus 316 lLasG~DdGt~~iwDLR~~~~~~pVA~f--------------k~Hk~pItsieW~----p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 316 LLASGGDDGTLSIWDLRQFKSGQPVATF--------------KYHKAPITSIEWH----PHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred eeeecCCCceEEEEEhhhccCCCcceeE--------------EeccCCeeEEEec----cccCceEEeccCCCcEEEEEe
Confidence 99999999999999999643 33334 4466699999999 355678999999999999987
Q ss_pred ccCCC------ee------eEeeeeecc--cCceeEEEEcCC-CCEEEEecCCCcE
Q 021036 226 DISCN------KF------DKVGSYNAH--DQVVTGLAWAFD-GCCLYSCSQDNFV 266 (318)
Q Consensus 226 ~~~~~------~~------~~~~~~~~h--~~~v~~~~~~~~-~~~l~s~~~d~~v 266 (318)
.+... .. .+.+-+.-| ...+-.+.|+++ ..++++.+.||.-
T Consensus 378 svE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfn 433 (440)
T KOG0302|consen 378 SVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFN 433 (440)
T ss_pred eccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEeccccee
Confidence 54332 00 011122234 235778999997 3378888888743
No 131
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1.7e-19 Score=152.35 Aligned_cols=242 Identities=19% Similarity=0.148 Sum_probs=173.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeeccccc------------------------------
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLR------------------------------ 67 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~------------------------------ 67 (318)
.-+++||.||++|||.+.++.|+..+.... .+.|++|+|...
T Consensus 413 ~wlasGsdDGtvriWEi~TgRcvr~~~~d~--------~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~e 484 (733)
T KOG0650|consen 413 EWLASGSDDGTVRIWEIATGRCVRTVQFDS--------EIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKE 484 (733)
T ss_pred ceeeecCCCCcEEEEEeecceEEEEEeecc--------eeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhh
Confidence 346999999999999999999988776532 134455655432
Q ss_pred --------------------------------CCCCcccccccCCCCCccEEEEecC---CCcEEEEEccCCcccccccc
Q 021036 68 --------------------------------LSSKKYPVPQNGSSNWFSILAVGGR---SGKVSLWRICVPKCYSVEDC 112 (318)
Q Consensus 68 --------------------------------~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~ 112 (318)
...|..+|..+.+...|.||++..- ...|.|.++....
T Consensus 485 ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~------- 557 (733)
T KOG0650|consen 485 LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK------- 557 (733)
T ss_pred hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc-------
Confidence 1124456777777777778777543 3356777776532
Q ss_pred ccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeeccc
Q 021036 113 KVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTV 192 (318)
Q Consensus 113 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (318)
....|+...+-|.++.| .|...+|++++. ..|+|||+.....++.+.....
T Consensus 558 -------sQ~PF~kskG~vq~v~F-------HPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~k-------------- 608 (733)
T KOG0650|consen 558 -------SQSPFRKSKGLVQRVKF-------HPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSK-------------- 608 (733)
T ss_pred -------ccCchhhcCCceeEEEe-------cCCCceEEEEec-cceEEEehhHHHHHHHHhcCCe--------------
Confidence 22334445678999999 555557777765 6899999998776666543332
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.|..++++ |.|..|+.|+.|+.+..||+++.+. +..++..|...+++|+|++.-.+|++|+.||++.+|--.
T Consensus 609 wiS~msih-----p~GDnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~ 680 (733)
T KOG0650|consen 609 WISSMSIH-----PNGDNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGM 680 (733)
T ss_pred eeeeeeec-----CCCCeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeee
Confidence 78999999 9999999999999999998887765 566788899999999999999999999999999998532
Q ss_pred C-CceeeeecCCCCCCccccccCCCccee----eeEEEEcCCCcEEEEEe
Q 021036 273 G-NSLSQVSIPTNTPGLQSCTDLPDAFVS----CLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 273 ~-~~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~~~~ 317 (318)
- ..+. ..+.++-...+++|... |..+.|+|...+|.++.
T Consensus 681 VY~Dl~------qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAG 724 (733)
T KOG0650|consen 681 VYNDLL------QNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAG 724 (733)
T ss_pred eehhhh------cCCceEeeeeccCceeecccceEeecccCCCceEEecC
Confidence 1 0010 01111122345556544 89999999999988764
No 132
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=7.3e-19 Score=138.35 Aligned_cols=228 Identities=14% Similarity=0.107 Sum_probs=168.4
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
...+...++.|.+.-|.+||.-+++....+. .|.|.+.+....++.|+|++ ..|++| ..
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~lraSy~--~ydh~de~taAhsL~Fs~DG------------------eqlfaG-yk 178 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGKLRASYR--AYDHQDEYTAAHSLQFSPDG------------------EQLFAG-YK 178 (406)
T ss_pred CCccceeeeccccCceeeeeccccccccchh--hhhhHHhhhhheeEEecCCC------------------CeEeec-cc
Confidence 4455667889999999999999998654443 56677777777788888888 888866 56
Q ss_pred CcEEEEEccC-CccccccccccCCceeEEeee-----ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 94 GKVSLWRICV-PKCYSVEDCKVPTTAVLIGLF-----QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 94 g~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
..|+++|+.. |... .+... .+..+-|.|++|+| .+...++.++...++-|+.-..+
T Consensus 179 rcirvFdt~RpGr~c------------~vy~t~~~~k~gq~giisc~a~sP------~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 179 RCIRVFDTSRPGRDC------------PVYTTVTKGKFGQKGIISCFAFSP------MDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred ceEEEeeccCCCCCC------------cchhhhhcccccccceeeeeeccC------CCCcceeeecccceeeeEecCCC
Confidence 7899999943 3211 11111 23467789999933 34457999999999999988888
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccC-ce
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQ-VV 245 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~-~v 245 (318)
..+..+.+| .+.|+.++|. ++|+.|++|. .+-.|..| |++..+ .++..+..|.. .-
T Consensus 241 ~pl~llggh--------------~gGvThL~~~-----edGn~lfsGaRk~dkIl~W--DiR~~~-~pv~~L~rhv~~TN 298 (406)
T KOG2919|consen 241 RPLQLLGGH--------------GGGVTHLQWC-----EDGNKLFSGARKDDKILCW--DIRYSR-DPVYALERHVGDTN 298 (406)
T ss_pred Cceeeeccc--------------CCCeeeEEec-----cCcCeecccccCCCeEEEE--eehhcc-chhhhhhhhccCcc
Confidence 777766554 4599999999 9999999998 58889999 555543 36777777765 33
Q ss_pred eEE--EEcCCCCEEEEecCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 246 TGL--AWAFDGCCLYSCSQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 246 ~~~--~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..| ...|++++|++|+.||.|++||+++ +.... .+..|+..|+.|+++|--.++|++
T Consensus 299 QRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~s--------------v~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 299 QRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVS--------------VTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred ceEEEecCCCCceeeccCCCccEEEEecCCCCCccc--------------ccccccccccceecCcccceeeec
Confidence 334 4467899999999999999999987 44221 112255688999999988888775
No 133
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=8.3e-19 Score=149.20 Aligned_cols=240 Identities=15% Similarity=0.118 Sum_probs=153.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
....+++++.|.+++.||+.+.++.-.- .+.+|.+.|.+++|.+. ...|++|+.||
T Consensus 111 ge~~lVsasGDsT~r~Wdvk~s~l~G~~-----------------------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 111 GESLLVSASGDSTIRPWDVKTSRLVGGR-----------------------LNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred CceeEEEccCCceeeeeeeccceeecce-----------------------eecccccccchhhhccCCCcceeeccCCC
Confidence 4456899999999999999988763331 12234444455555443 67899999999
Q ss_pred cEEEEEccCCccccccc----------ccc---CCceeEEeeeccccccEEE---EEeeeecCCCCCCCcEEEEEeC-CC
Q 021036 95 KVSLWRICVPKCYSVED----------CKV---PTTAVLIGLFQAHNSWITS---ISLAVLSSDSSNPQVLLVTGSS-DG 157 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~----------~~~---~~~~~~~~~~~~h~~~v~~---~~~~p~~~~~~~~~~~l~s~~~-d~ 157 (318)
.|.|||+.....-..++ ..+ ..-.+.++..+.+...|.+ +.+ ..+...|++++. |+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~-------fkDe~tlaSaga~D~ 240 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVL-------FKDESTLASAGAADS 240 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEE-------EeccceeeeccCCCc
Confidence 99999997543110000 100 0011222333455555544 444 467778999887 99
Q ss_pred cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee
Q 021036 158 SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 158 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
.|++||++............... . .........+.++..+ ..|.+|++.+.|+.|++| ++......++..
T Consensus 241 ~iKVWDLRk~~~~~r~ep~~~~~--~-~t~skrs~G~~nL~lD-----ssGt~L~AsCtD~sIy~y--nm~s~s~sP~~~ 310 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPRGSDK--Y-PTHSKRSVGQVNLILD-----SSGTYLFASCTDNSIYFY--NMRSLSISPVAE 310 (720)
T ss_pred ceEEEeecccccccccCCCcccC--c-cCcccceeeeEEEEec-----CCCCeEEEEecCCcEEEE--eccccCcCchhh
Confidence 99999999765443221111000 0 0001123367778777 778888888889999999 565555557777
Q ss_pred eecccCcee--EEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 238 YNAHDQVVT--GLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 238 ~~~h~~~v~--~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
+.++...-. .-..+|++.++++|+.|...++|.+..-..... -+.+|.-.|++|+|.|
T Consensus 311 ~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~-------------~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 311 FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPA-------------LLLGHTREVTTVRWLP 370 (720)
T ss_pred ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChh-------------hhhCcceEEEEEeecc
Confidence 666543211 124689999999999999999999876444321 2345777899999998
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=4.3e-19 Score=139.42 Aligned_cols=164 Identities=13% Similarity=0.259 Sum_probs=119.2
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|..++..+.....+.+|++++.|..|.||+++ | +.+..+......-+..+. +|+|++
T Consensus 185 kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-G--------------q~L~~idtnq~~n~~aav-------SP~GRF 242 (420)
T KOG2096|consen 185 KHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-G--------------QLLQSIDTNQSSNYDAAV-------SPDGRF 242 (420)
T ss_pred hcccceEEEeecCCceEEEEecCCCcEEEEecC-C--------------ceeeeeccccccccceee-------CCCCcE
Confidence 356677788888889999999999999999998 3 455566555556677788 999999
Q ss_pred EEEEeCCCcEEEEECCC---cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 150 LVTGSSDGSVRIWDGYI---QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+++++----|++|.+-- |+....-.. ....+|...|..++|+ ++...+++.+.||++++||.|
T Consensus 243 ia~~gFTpDVkVwE~~f~kdG~fqev~rv---------f~LkGH~saV~~~aFs-----n~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 243 IAVSGFTPDVKVWEPIFTKDGTFQEVKRV---------FSLKGHQSAVLAAAFS-----NSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred EEEecCCCCceEEEEEeccCcchhhhhhh---------heeccchhheeeeeeC-----CCcceeEEEecCCcEEEeecc
Confidence 99999999999998642 211111000 1135677799999999 999999999999999999965
Q ss_pred cCCCeee------------------Ee-------------------eee------------ecccCceeEEEEcCCCCEE
Q 021036 227 ISCNKFD------------------KV-------------------GSY------------NAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 227 ~~~~~~~------------------~~-------------------~~~------------~~h~~~v~~~~~~~~~~~l 257 (318)
.+-..-+ ++ +.+ ..|...|.+++|+++|+++
T Consensus 309 VrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~ 388 (420)
T KOG2096|consen 309 VRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYI 388 (420)
T ss_pred ceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEE
Confidence 4311000 00 000 1367788899999999998
Q ss_pred EEecCCCcEEEEE
Q 021036 258 YSCSQDNFVRSWI 270 (318)
Q Consensus 258 ~s~~~d~~v~iwd 270 (318)
++++ |..++++.
T Consensus 389 atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 389 ATCG-DRYVRVIR 400 (420)
T ss_pred eeec-ceeeeeec
Confidence 8887 55666664
No 135
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.82 E-value=4e-19 Score=147.13 Aligned_cols=186 Identities=15% Similarity=0.199 Sum_probs=142.5
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+|+.......++++|+..+.|+|||++... ..+.+++|.+.|+++.| .....+|++++.
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl--------------~hr~lkdh~stvt~v~Y-------N~~DeyiAsvs~ 141 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRAKL--------------IHRFLKDHQSTVTYVDY-------NNTDEYIASVSD 141 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHHHH--------------HhhhccCCcceeEEEEe-------cCCcceeEEecc
Confidence 344444445899999999999999999633 44678899999999999 788889999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKV 235 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~ 235 (318)
.|.|.|..+.++.....+... ....|..+.|+ +....+|.+++.+|.|.+|| ...... ..
T Consensus 142 gGdiiih~~~t~~~tt~f~~~-------------sgqsvRll~ys----~skr~lL~~asd~G~VtlwD--v~g~sp-~~ 201 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTID-------------SGQSVRLLRYS----PSKRFLLSIASDKGAVTLWD--VQGMSP-IF 201 (673)
T ss_pred CCcEEEEecccCccccceecC-------------CCCeEEEeecc----cccceeeEeeccCCeEEEEe--ccCCCc-cc
Confidence 999999999888766555432 12356788898 23456778899999999995 444442 22
Q ss_pred eeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 236 GSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
.-.+.|..+...++|+|.. .+|++.+.|..|.+||.+........... .+...|+|.++|.+|+
T Consensus 202 ~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~---------------~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 202 HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS---------------HPLSTVAFSECGTYLC 266 (673)
T ss_pred chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec---------------CCcceeeecCCceEEE
Confidence 3346799999999999964 58899999999999999865443222111 2678999999999999
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
.|.
T Consensus 267 aG~ 269 (673)
T KOG4378|consen 267 AGN 269 (673)
T ss_pred eec
Confidence 874
No 136
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.82 E-value=2.5e-19 Score=141.11 Aligned_cols=236 Identities=13% Similarity=0.153 Sum_probs=158.4
Q ss_pred cce-EEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCCc
Q 021036 18 HPT-VAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSGK 95 (318)
Q Consensus 18 ~~~-~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg~ 95 (318)
+|+ ++|+.-|-|||.|+.++++...+. +|..+|..+.+.|. .+++++++.|.+
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~-------------------------ghG~sINeik~~p~~~qlvls~SkD~s 159 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYR-------------------------GHGGSINEIKFHPDRPQLVLSASKDHS 159 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcccee-------------------------ccCccchhhhcCCCCCcEEEEecCCce
Confidence 443 445566777777777776644433 33334444444443 589999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
||+|++++..|+ ....-+.+|.+.|.++.| +.+|++|++++.|.++++|++...+....++.
T Consensus 160 vRlwnI~~~~Cv-----------~VfGG~egHrdeVLSvD~-------~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 160 VRLWNIQTDVCV-----------AVFGGVEGHRDEVLSVDF-------SLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred EEEEeccCCeEE-----------EEecccccccCcEEEEEE-------cCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 999999997763 234445789999999999 99999999999999999999985432221110
Q ss_pred --------ccccccc----c--eeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee-ccCCC---------e
Q 021036 176 --------HCVPFSL----L--KEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC-DISCN---------K 231 (318)
Q Consensus 176 --------~~~~~~~----~--~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~-~~~~~---------~ 231 (318)
...|+.. + ......|...|.|+.|- |+++++-+.++.|..|.. .+... .
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~-------gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~ 294 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF-------GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA 294 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHH-------hhheeecccCceEEEEecchhhhhhhccCCCccc
Confidence 0111111 0 01345677777787775 689999999999999953 11111 0
Q ss_pred eeEeeeeecccCceeEEEE--cCCCCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 232 FDKVGSYNAHDQVVTGLAW--AFDGCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 232 ~~~~~~~~~h~~~v~~~~~--~~~~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
...+.++......|+-+.| +|-+++||.|.+.|.|.+||++..... ++..+... ..|...+|
T Consensus 295 ~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~-------------~tVRQ~sf 361 (385)
T KOG1034|consen 295 TTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSG-------------STVRQTSF 361 (385)
T ss_pred eeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEecccc-------------ceeeeeee
Confidence 1123334444556666654 556889999999999999999875432 22222222 48899999
Q ss_pred cCCCcEEEEE
Q 021036 307 SPGNLVVAMV 316 (318)
Q Consensus 307 sp~~~~l~~~ 316 (318)
+.||.+|+.+
T Consensus 362 S~dgs~lv~v 371 (385)
T KOG1034|consen 362 SRDGSILVLV 371 (385)
T ss_pred cccCcEEEEE
Confidence 9999987754
No 137
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-18 Score=152.92 Aligned_cols=188 Identities=17% Similarity=0.199 Sum_probs=143.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+|++++.||.|++|+...... ....+..+...|.+++. .+.+|++|+.+++|.+|.+
T Consensus 26 efi~tcgsdg~ir~~~~~sd~e-------------~P~ti~~~g~~v~~ia~---------~s~~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 26 EFICTCGSDGDIRKWKTNSDEE-------------EPETIDISGELVSSIAC---------YSNHFLTGSEQNTVLRYKF 83 (933)
T ss_pred CEEEEecCCCceEEeecCCccc-------------CCchhhccCceeEEEee---------cccceEEeeccceEEEeeC
Confidence 8999999999999999876521 11223337778888877 3448999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.+++....+.... .++++++++ .+|+++|.|+.|-.|++-+ ..+.. ....+.+|.++
T Consensus 84 ps~~~~~iL~Rft--------------lp~r~~~v~-----g~g~~iaagsdD~~vK~~~--~~D~s--~~~~lrgh~ap 140 (933)
T KOG1274|consen 84 PSGEEDTILARFT--------------LPIRDLAVS-----GSGKMIAAGSDDTAVKLLN--LDDSS--QEKVLRGHDAP 140 (933)
T ss_pred CCCCccceeeeee--------------ccceEEEEe-----cCCcEEEeecCceeEEEEe--ccccc--hheeecccCCc
Confidence 8876543333222 288999999 9999999999999999984 44444 45678999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCce-------------------eeeecCCCCCCcc--ccc-----------
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL-------------------SQVSIPTNTPGLQ--SCT----------- 292 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-------------------~~~~~~~~~~~~~--~~~----------- 292 (318)
|.++.|+|.+.+||+.+-||.|++||+.++.+ .+..++|.+..++ +..
T Consensus 141 Vl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w 220 (933)
T KOG1274|consen 141 VLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGW 220 (933)
T ss_pred eeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCc
Confidence 99999999999999999999999999986443 2344566644333 111
Q ss_pred ----cCC--CcceeeeEEEEcCCCcEEEEEe
Q 021036 293 ----DLP--DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 293 ----~~~--~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++ .+...+..++|+|+|+|||++.
T Consensus 221 e~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 221 ELQFKLRDKLSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eeheeecccccccceEEEEEcCCCcEEeeec
Confidence 011 3445599999999999999975
No 138
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.82 E-value=2e-18 Score=134.02 Aligned_cols=237 Identities=16% Similarity=0.127 Sum_probs=155.9
Q ss_pred ccceEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCC-CccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN-WFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~-~~~~l~~g~~d 93 (318)
..|-+.++.+..+|+|.+..... ........ + ....+..|+++.++.. +.++|.+++-|
T Consensus 111 ~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~--~----------------kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 111 VYPDLLATSSDFLRLWRIGDEESRVELQSVLNN--N----------------KNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred cCcchhhcccCeEEEEeccCcCCceehhhhhcc--C----------------cccccCCcccccccccCCcceeEeeccc
Confidence 45556677777899998764321 11111100 0 1112333444444433 26899999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
-+..|||++++.. +.....+.+|...|..++| ..++ +.|++.+.||.||+||++..+--..
T Consensus 173 TTCTiWdie~~~~-----------~~vkTQLIAHDKEV~DIaf-------~~~s~~~FASvgaDGSvRmFDLR~leHSTI 234 (364)
T KOG0290|consen 173 TTCTIWDIETGVS-----------GTVKTQLIAHDKEVYDIAF-------LKGSRDVFASVGADGSVRMFDLRSLEHSTI 234 (364)
T ss_pred CeEEEEEEeeccc-----------cceeeEEEecCcceeEEEe-------ccCccceEEEecCCCcEEEEEecccccceE
Confidence 9999999998632 2234567799999999999 5543 7899999999999999997543222
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
+-.... ...+...++|+ ..+.+++|+-..| ..|.+- |++... .++.++++|.+.|.+++|.
T Consensus 235 IYE~p~-----------~~~pLlRLswn----kqDpnymATf~~dS~~V~iL--DiR~P~-tpva~L~~H~a~VNgIaWa 296 (364)
T KOG0290|consen 235 IYEDPS-----------PSTPLLRLSWN----KQDPNYMATFAMDSNKVVIL--DIRVPC-TPVARLRNHQASVNGIAWA 296 (364)
T ss_pred EecCCC-----------CCCcceeeccC----cCCchHHhhhhcCCceEEEE--EecCCC-cceehhhcCcccccceEec
Confidence 211111 13366777787 3566788876544 457776 554432 3788999999999999999
Q ss_pred CC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 252 FD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 252 ~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
|. ...|++++.|..+.|||+..-.... ...+.++ -...+.|+.+.|++ .+.+|+.+
T Consensus 297 PhS~~hictaGDD~qaliWDl~q~~~~~----~~dPila-----y~a~~EVNqi~Ws~~~~Dwiai~ 354 (364)
T KOG0290|consen 297 PHSSSHICTAGDDCQALIWDLQQMPREN----GEDPILA-----YTAGGEVNQIQWSSSQPDWIAIC 354 (364)
T ss_pred CCCCceeeecCCcceEEEEecccccccC----CCCchhh-----hhccceeeeeeecccCCCEEEEE
Confidence 97 5589999999999999997632210 0001010 01224789999997 67787765
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7.6e-18 Score=144.27 Aligned_cols=242 Identities=19% Similarity=0.169 Sum_probs=172.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCC-----------------------CCccc
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLS-----------------------SKKYP 74 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~-----------------------~~~~~ 74 (318)
+.++.+-.||.|.||++..+-+....-. . +.... +-.++|.+.+++. ...++
T Consensus 38 ~~lAvsRt~g~IEiwN~~~~w~~~~vi~-g-~~drs---IE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~ 112 (691)
T KOG2048|consen 38 NQLAVSRTDGNIEIWNLSNNWFLEPVIH-G-PEDRS---IESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGA 112 (691)
T ss_pred CceeeeccCCcEEEEccCCCceeeEEEe-c-CCCCc---eeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcc
Confidence 3478888999999999988654433221 1 12222 2237777665522 23457
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.+++.++.+..++.|+.||.+.+++...+. ....+.+....++|.+++| .+++..|++|+
T Consensus 113 IWsiai~p~~~~l~IgcddGvl~~~s~~p~~------------I~~~r~l~rq~sRvLslsw-------~~~~~~i~~Gs 173 (691)
T KOG2048|consen 113 IWSIAINPENTILAIGCDDGVLYDFSIGPDK------------ITYKRSLMRQKSRVLSLSW-------NPTGTKIAGGS 173 (691)
T ss_pred eeEEEeCCccceEEeecCCceEEEEecCCce------------EEEEeecccccceEEEEEe-------cCCccEEEecc
Confidence 8899999999999999999988888887655 3455566667899999999 89999999999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|++||..+++.+......... .......-|.++.+- ....+++|+..|+|.+| |...+. .
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~------l~k~~~~iVWSv~~L------rd~tI~sgDS~G~V~FW--d~~~gT--L 237 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDR------LSKREPTIVWSVLFL------RDSTIASGDSAGTVTFW--DSIFGT--L 237 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccc------cccCCceEEEEEEEe------ecCcEEEecCCceEEEE--cccCcc--h
Confidence 9999999999998877633222110 001112245666664 34679999999999999 666666 6
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
+..+..|.+.|.+++..+++.++++++.|+.|..|...++...-+... ....|...|.+++..++
T Consensus 238 iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~----------~r~~h~hdvrs~av~~~ 302 (691)
T KOG2048|consen 238 IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINS----------RRDLHAHDVRSMAVIEN 302 (691)
T ss_pred hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeec----------cccCCcccceeeeeecc
Confidence 778888999999999999999999999999999998876543211111 12234456777777665
No 140
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.82 E-value=1e-17 Score=146.69 Aligned_cols=245 Identities=21% Similarity=0.285 Sum_probs=177.2
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+-++.|++.|.+.+|++.+++.+..+.. +.+ .++++.-+|.. ..+|.|..+|+|.
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~----~~s---~IT~ieqsPaL------------------DVVaiG~~~G~Vi 227 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQE----FFS---RITAIEQSPAL------------------DVVAIGLENGTVI 227 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecc----ccc---ceeEeccCCcc------------------eEEEEeccCceEE
Confidence 3379999999999999999998777654 222 25568888888 9999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeec-c
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAE-A 175 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~-~ 175 (318)
|++++.++ .+.+++...++|+.++| ..+|. .+++|+..|.+.+||++..+....+. .
T Consensus 228 ifNlK~dk--------------il~sFk~d~g~VtslSF-------rtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 228 IFNLKFDK--------------ILMSFKQDWGRVTSLSF-------RTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred EEEcccCc--------------EEEEEEccccceeEEEe-------ccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 99999854 56677755699999999 77775 56666677999999998655443221 1
Q ss_pred ----------------------------------------------cccccccce-------------------------
Q 021036 176 ----------------------------------------------HCVPFSLLK------------------------- 184 (318)
Q Consensus 176 ----------------------------------------------~~~~~~~~~------------------------- 184 (318)
|..|...++
T Consensus 287 h~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 287 HYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred ccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 111111111
Q ss_pred ----------------------------------------------eeeee-----------------------------
Q 021036 185 ----------------------------------------------EVVTV----------------------------- 189 (318)
Q Consensus 185 ----------------------------------------------~~~~~----------------------------- 189 (318)
.+...
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence 00011
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee---ecccCceeEEEEcCCCCEEEEecCCCcE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
....+.+++.+ +.|++.+.|...|.|-+| +++++. ...++ ..|..+|++++.+.-++.+++++.+|-+
T Consensus 447 ~~~~~~av~vs-----~CGNF~~IG~S~G~Id~f--NmQSGi--~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gil 517 (910)
T KOG1539|consen 447 DDINATAVCVS-----FCGNFVFIGYSKGTIDRF--NMQSGI--HRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGIL 517 (910)
T ss_pred cCcceEEEEEe-----ccCceEEEeccCCeEEEE--EcccCe--eecccccCccccCceeEEEecCCCceEEEccCcceE
Confidence 12456677777 889999999999999999 666765 44455 4799999999999889999999999999
Q ss_pred EEEEecCCceee-eec---------CCCCCCcc-cc----------------ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 267 RSWIFHGNSLSQ-VSI---------PTNTPGLQ-SC----------------TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 267 ~iwd~~~~~~~~-~~~---------~~~~~~~~-~~----------------~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++||..+..+.. +.. +.....++ .. ..+.+|++.|++++|||||++|+++.
T Consensus 518 kfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas 595 (910)
T KOG1539|consen 518 KFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS 595 (910)
T ss_pred EEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee
Confidence 999998765321 111 11111111 11 23458999999999999999999863
No 141
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.2e-18 Score=142.91 Aligned_cols=235 Identities=15% Similarity=0.147 Sum_probs=170.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
..+-+.+...+++++..+....||+++.+..+.-...+ +.. ..+....+|+++++|+.
T Consensus 263 a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g--~e~--------------------~~~e~FeVShd~~fia~ 320 (514)
T KOG2055|consen 263 AEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYG--VEE--------------------KSMERFEVSHDSNFIAI 320 (514)
T ss_pred eeecCCCceEEEecccceEEEEeeccccccccccCCCC--ccc--------------------chhheeEecCCCCeEEE
Confidence 34445455578999999999999999876544322211 111 01122234444599999
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
.+..|.|.+-...+++ .+.+++ -.+.|..++| +.+++.|++++.+|.|.+||++...+
T Consensus 321 ~G~~G~I~lLhakT~e--------------li~s~K-ieG~v~~~~f-------sSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 321 AGNNGHIHLLHAKTKE--------------LITSFK-IEGVVSDFTF-------SSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred cccCceEEeehhhhhh--------------hhheee-eccEEeeEEE-------ecCCcEEEEEcCCceEEEEecCCcce
Confidence 9999999999999865 344454 3578999999 78899999999999999999999988
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc--CCCeeeEeeeeecccCceeE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI--SCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~--~~~~~~~~~~~~~h~~~v~~ 247 (318)
++.+..... -.-++++.+ +++.+||+|+..|.|.|||.+. ....++++..+..-...|++
T Consensus 379 ~~rf~D~G~-------------v~gts~~~S-----~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Its 440 (514)
T KOG2055|consen 379 LHRFVDDGS-------------VHGTSLCIS-----LNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITS 440 (514)
T ss_pred EEEEeecCc-------------cceeeeeec-----CCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeee
Confidence 887764432 123567777 8999999999999999996432 23345577777777889999
Q ss_pred EEEcCCCCEEEEec--CCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 248 LAWAFDGCCLYSCS--QDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 248 ~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++|+++++.||.+| .+..+++--+.+.....-....+. .-+.|++|+|+|.|-+||.|.
T Consensus 441 l~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~-----------~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 441 LQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNT-----------KVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred eeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCC-----------cccceEEEEecCCCceEEeec
Confidence 99999999887766 456788887766444432222111 235789999999999999884
No 142
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.4e-19 Score=148.34 Aligned_cols=223 Identities=22% Similarity=0.245 Sum_probs=160.5
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++++.|+++.+|+++.... +.. ...-|.-.+.+|.+||.|+++...+..+++|+-||+|
T Consensus 306 ep~lit~sed~~lk~WnLqk~~~----------s~~-------~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I 368 (577)
T KOG0642|consen 306 EPVLITASEDGTLKLWNLQKAKK----------SAE-------KDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTI 368 (577)
T ss_pred CCeEEEeccccchhhhhhcccCC----------ccc-------cceeeeEEEecccCceEEEEecCCceEEEeeccCcee
Confidence 34479999999999999944110 111 2233444678899999999999999999999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce--eeeec
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL--QKSAE 174 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~ 174 (318)
+.|++.. ..-+.+...+ ......+.||.+.|+.+++ +...+.|++++.||++++|+...... .....
T Consensus 369 ~~w~~p~-n~dp~ds~dp---~vl~~~l~Ghtdavw~l~~-------s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~ 437 (577)
T KOG0642|consen 369 RCWNLPP-NQDPDDSYDP---SVLSGTLLGHTDAVWLLAL-------SSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPK 437 (577)
T ss_pred eeeccCC-CCCcccccCc---chhccceeccccceeeeee-------cccccceeeecCCceEEeeccCCcCccccCCcc
Confidence 9997762 1111000110 2344568899999999999 77778899999999999999876554 11111
Q ss_pred ccccccccce--------------------------e--eee----e---cccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 175 AHCVPFSLLK--------------------------E--VVT----V---NTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 175 ~~~~~~~~~~--------------------------~--~~~----~---~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
.+..|..+.. . +.. . ....+.-+.+. |+..+.+++..|+.
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~-----~~~~~~~~~hed~~ 512 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH-----PTADITFTAHEDRS 512 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEec-----CCCCeeEecccCCc
Confidence 1222221111 0 000 0 01234555566 88899999999999
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
|+++ |..+++ ++.....|...++++++.|+|.+|++++.|+.+++|.+....+
T Consensus 513 Ir~~--dn~~~~--~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 513 IRFF--DNKTGK--ILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eecc--cccccc--cchheeeccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9999 666666 7888889999999999999999999999999999999865443
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.81 E-value=3e-18 Score=147.10 Aligned_cols=244 Identities=19% Similarity=0.220 Sum_probs=173.0
Q ss_pred cceEEeeCCCceeEeecCC--CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 18 HPTVAASKSKGNSITKIPS--NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
-.++++|.|+++.+|.-.+ |-.+........+... ..=....|+|++ +.+++-+.-|-
T Consensus 280 ~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a--~GF~g~lw~~n~------------------~~ii~~g~~Gg 339 (764)
T KOG1063|consen 280 LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSA--GGFWGGLWSPNS------------------NVIIAHGRTGG 339 (764)
T ss_pred hhheecccCcceEEEecCCccceEEEEEEeecccccc--cceeeEEEcCCC------------------CEEEEecccCc
Confidence 4689999999999996554 4444444443332111 111236788887 99999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeeee-
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKSA- 173 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~- 173 (318)
.++|..++... ..+...+.+|.+.|.+++| .|.|++|++.+.|.+-|++---..+ .-+.+
T Consensus 340 ~hlWkt~d~~~-----------w~~~~~iSGH~~~V~dv~W-------~psGeflLsvs~DQTTRlFa~wg~q~~wHEia 401 (764)
T KOG1063|consen 340 FHLWKTKDKTF-----------WTQEPVISGHVDGVKDVDW-------DPSGEFLLSVSLDQTTRLFARWGRQQEWHEIA 401 (764)
T ss_pred EEEEeccCccc-----------eeeccccccccccceeeee-------cCCCCEEEEeccccceeeecccccccceeeec
Confidence 99999443221 2344557899999999999 8999999999999999988543111 00000
Q ss_pred --ccccc----------------------------ccccce---------------------------------------
Q 021036 174 --EAHCV----------------------------PFSLLK--------------------------------------- 184 (318)
Q Consensus 174 --~~~~~----------------------------~~~~~~--------------------------------------- 184 (318)
..|.. |....+
T Consensus 402 RPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~ 481 (764)
T KOG1063|consen 402 RPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNT 481 (764)
T ss_pred ccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCccccccc
Confidence 00000 000000
Q ss_pred -------------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCC-----cEEE
Q 021036 185 -------------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-----SFDL 222 (318)
Q Consensus 185 -------------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-----~i~v 222 (318)
+...+|...|++++.+ |+++++|+++... .|++
T Consensus 482 G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s-----~~gnliASaCKS~~~ehAvI~l 556 (764)
T KOG1063|consen 482 GGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAIS-----PTGNLIASACKSSLKEHAVIRL 556 (764)
T ss_pred ccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEec-----CCCCEEeehhhhCCccceEEEE
Confidence 2345789999999999 9999999998554 4889
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
| + +..+..++.+.+|.-.|+.++|||||++|++.+.|+++.+|.........+.+ .....|+--|.
T Consensus 557 w--~--t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~f----------a~~k~HtRIIW 622 (764)
T KOG1063|consen 557 W--N--TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRF----------ACLKAHTRIIW 622 (764)
T ss_pred E--e--ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhh----------ccccccceEEE
Confidence 8 4 33444677899999999999999999999999999999999885543332221 12445888999
Q ss_pred EEEEcCCCcEEEEEeC
Q 021036 303 GMAVSPGNLVVAMVQI 318 (318)
Q Consensus 303 ~v~~sp~~~~l~~~~~ 318 (318)
++.|+|++.++||+.+
T Consensus 623 dcsW~pde~~FaTaSR 638 (764)
T KOG1063|consen 623 DCSWSPDEKYFATASR 638 (764)
T ss_pred EcccCcccceeEEecC
Confidence 9999999999999853
No 144
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.5e-18 Score=142.30 Aligned_cols=240 Identities=14% Similarity=0.084 Sum_probs=160.2
Q ss_pred CcCCCCCc-cceEEeeCCCceeEeecCCCCC-CCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccE
Q 021036 10 NKMKDSNT-HPTVAASKSKGNSITKIPSNCC-LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSI 86 (318)
Q Consensus 10 ~~~~~~~~-~~~~t~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~ 86 (318)
.++-+... ..+++|..-|+|-+||+.+.+. ...+ +.+. .|..+|.++.|+|- ...
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v----------------~~f~------~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV----------------YLFT------PHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCce----------------EEec------cCCccccceEecCCChhh
Confidence 33334444 5678899999999999963221 1111 1122 23355555555553 578
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
+++.+.||+|++-|++... .+.+..+......+.++.| +.+...++.+..=|...+||.+.
T Consensus 250 i~ssSyDGtiR~~D~~~~i------------~e~v~s~~~d~~~fs~~d~-------~~e~~~vl~~~~~G~f~~iD~R~ 310 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNI------------SEEVLSLDTDNIWFSSLDF-------SAESRSVLFGDNVGNFNVIDLRT 310 (498)
T ss_pred eeeeccCceeeeeeecchh------------hHHHhhcCccceeeeeccc-------cCCCccEEEeecccceEEEEeec
Confidence 9999999999999998754 2233333334556777888 66666677777767999999997
Q ss_pred cce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
+.. ...+..|. ..|+.++++ |-...+||+++.|++.+|||+..-..+..++.....|...|
T Consensus 311 ~~s~~~~~~lh~--------------kKI~sv~~N----P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV 372 (498)
T KOG4328|consen 311 DGSEYENLRLHK--------------KKITSVALN----PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSV 372 (498)
T ss_pred CCccchhhhhhh--------------cccceeecC----CCCchheeecccCcceeeeehhhhcCCCCcceeccccccee
Confidence 643 44444443 389999999 34568999999999999995443333332333445699999
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEec----CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFH----GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++.|||.+-.|+|.+.|..|+|||.. .........|.. +...|. .....+|.|+..+|++|+
T Consensus 373 ~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~--------~t~Rwl-T~fKA~W~P~~~li~vg~ 439 (498)
T KOG4328|consen 373 NSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNN--------RTGRWL-TPFKAAWDPDYNLIVVGR 439 (498)
T ss_pred eeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccC--------cccccc-cchhheeCCCccEEEEec
Confidence 999999987779999999999999984 222222222221 111122 234678999999998875
No 145
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.80 E-value=7.4e-18 Score=135.96 Aligned_cols=203 Identities=17% Similarity=0.188 Sum_probs=148.3
Q ss_pred CcCCCCCccceEEeeCCCceeEeecCCCCCCCceecc---hhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 10 NKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITAD---QYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 10 ~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
.++-+.|.+.+++||.|.+|.||+++.+-........ -.+|...+ ..++|+|.. .+.
T Consensus 87 i~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrV---g~V~wHPtA-----------------~NV 146 (472)
T KOG0303|consen 87 IDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRV---GLVQWHPTA-----------------PNV 146 (472)
T ss_pred cccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeE---EEEeecccc-----------------hhh
Confidence 4567788899999999999999999986554443321 22355543 349999987 589
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
|++++.|.+|.||++.+++. +.++. |.+.|++++| +.+|.+|+|.+.|..|+|||.++
T Consensus 147 Llsag~Dn~v~iWnv~tgea--------------li~l~-hpd~i~S~sf-------n~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 147 LLSAGSDNTVSIWNVGTGEA--------------LITLD-HPDMVYSMSF-------NRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred HhhccCCceEEEEeccCCce--------------eeecC-CCCeEEEEEe-------ccCCceeeeecccceeEEEcCCC
Confidence 99999999999999999763 33455 9999999999 99999999999999999999999
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CCCcEEEeeeccCCC-eeeEeeeeeccc
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSFDLWKCDISCN-KFDKVGSYNAHD 242 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i~vw~~~~~~~-~~~~~~~~~~h~ 242 (318)
++.+..-..|... .-....|- .+|.++-+|- .+..+.+|| ...- +.....++. ..
T Consensus 205 ~~~v~e~~~heG~-------------k~~Raifl-----~~g~i~tTGfsr~seRq~aLwd--p~nl~eP~~~~elD-tS 263 (472)
T KOG0303|consen 205 GTVVSEGVAHEGA-------------KPARAIFL-----ASGKIFTTGFSRMSERQIALWD--PNNLEEPIALQELD-TS 263 (472)
T ss_pred CcEeeecccccCC-------------CcceeEEe-----ccCceeeeccccccccceeccC--cccccCcceeEEec-cC
Confidence 9988876665531 22333454 6788555553 577899995 3322 211233333 33
Q ss_pred CceeEEEEcCCCCEE-EEecCCCcEEEEEecCCc
Q 021036 243 QVVTGLAWAFDGCCL-YSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l-~s~~~d~~v~iwd~~~~~ 275 (318)
..|.---|+++..++ ++|-.|+.||.|.+....
T Consensus 264 nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 264 NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred CceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 445545578887755 566789999999998765
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=3.3e-19 Score=160.84 Aligned_cols=218 Identities=19% Similarity=0.238 Sum_probs=155.7
Q ss_pred ceEEeeCCCceeEeecCCC---CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-ccEEEEecCCC
Q 021036 19 PTVAASKSKGNSITKIPSN---CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-FSILAVGGRSG 94 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~~~l~~g~~dg 94 (318)
.++.|..||.|.+||...- .....+ .+...|.++|..++|++. +++||+|+.||
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~l----------------------a~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVL----------------------ATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHH----------------------hhhcccCCceeeeeccccCCceeeccCCCC
Confidence 4788889999999987652 111111 134456667777777775 56999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEee-eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGL-FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.|.|||++..+.. ... -..-.+.|.+++| +......|++++.+|++.|||++..+.+-.+
T Consensus 140 eI~iWDlnn~~tP-------------~~~~~~~~~~eI~~lsW------NrkvqhILAS~s~sg~~~iWDlr~~~pii~l 200 (1049)
T KOG0307|consen 140 EILIWDLNKPETP-------------FTPGSQAPPSEIKCLSW------NRKVSHILASGSPSGRAVIWDLRKKKPIIKL 200 (1049)
T ss_pred cEEEeccCCcCCC-------------CCCCCCCCcccceEecc------chhhhHHhhccCCCCCceeccccCCCccccc
Confidence 9999999874421 100 1224578999999 4556678999999999999999987665544
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCC---cEEEeeeccCCCeeeEeeeeecccCceeEEE
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSG---SFDLWKCDISCNKFDKVGSYNAHDQVVTGLA 249 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~ 249 (318)
..+.. ...++.+.|+ |+ ...+++++.|. .|.+||++..+. ++..+++|...|.++.
T Consensus 201 s~~~~------------~~~~S~l~Wh-----P~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 201 SDTPG------------RMHCSVLAWH-----PDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLS 260 (1049)
T ss_pred ccCCC------------ccceeeeeeC-----CCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeec
Confidence 43321 1247789999 55 45666666443 589995433332 7778899999999999
Q ss_pred EcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 250 WAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 250 ~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
|++.+ ++|++++.|+.|.+|+.++++...-... ....+..+.|+|...
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~--------------~~nW~fdv~w~pr~P 309 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA--------------QGNWCFDVQWCPRNP 309 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCC--------------CCcceeeeeecCCCc
Confidence 99965 7999999999999999999776532211 123788999998544
No 147
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.80 E-value=2.1e-17 Score=137.29 Aligned_cols=228 Identities=16% Similarity=0.138 Sum_probs=154.7
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+....+||.++|.+.||+..+.+..+... .|.+. |.++..-.+|.+ ++|++|..
T Consensus 256 engdviTgDS~G~i~Iw~~~~~~~~k~~~----aH~gg---------------------v~~L~~lr~Gtl-lSGgKDRk 309 (626)
T KOG2106|consen 256 ENGDVITGDSGGNILIWSKGTNRISKQVH----AHDGG---------------------VFSLCMLRDGTL-LSGGKDRK 309 (626)
T ss_pred CCCCEEeecCCceEEEEeCCCceEEeEee----ecCCc---------------------eEEEEEecCccE-eecCccce
Confidence 34557999999999999886554333322 23333 333444444455 45999999
Q ss_pred EEEEEccCCcccccc----cc--------cc------CC--------ceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 96 VSLWRICVPKCYSVE----DC--------KV------PT--------TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 96 i~iw~~~~~~~~~~~----~~--------~~------~~--------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
|..||-.-.+.-.++ .+ .. .. .........+|.+..+.++- .+..++
T Consensus 310 i~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~-------hps~~q 382 (626)
T KOG2106|consen 310 IILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLAT-------HPSKNQ 382 (626)
T ss_pred EEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEc-------CCChhh
Confidence 999994321111000 00 00 00 00111234578889999999 777889
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++|++.|+.+++|+ ..+...+.... .+..++.|+ |.| .+|.|...|...+. |.++
T Consensus 383 ~~T~gqdk~v~lW~--~~k~~wt~~~~---------------d~~~~~~fh-----psg-~va~Gt~~G~w~V~--d~e~ 437 (626)
T KOG2106|consen 383 LLTCGQDKHVRLWN--DHKLEWTKIIE---------------DPAECADFH-----PSG-VVAVGTATGRWFVL--DTET 437 (626)
T ss_pred eeeccCcceEEEcc--CCceeEEEEec---------------CceeEeecc-----Ccc-eEEEeeccceEEEE--eccc
Confidence 99999999999999 44555443322 277899999 888 99999999998887 5555
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
.. .+. +.....+++++.|+|+|.+||.|+.|+.|+||-+..+.. ......- +.++|+.+.|++
T Consensus 438 ~~--lv~-~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-------------~gs~ithLDwS~ 501 (626)
T KOG2106|consen 438 QD--LVT-IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-------------SGSPITHLDWSS 501 (626)
T ss_pred ce--eEE-EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-------------cCceeEEeeecC
Confidence 44 333 333378999999999999999999999999999865332 2211111 114899999999
Q ss_pred CCcEEEEEe
Q 021036 309 GNLVVAMVQ 317 (318)
Q Consensus 309 ~~~~l~~~~ 317 (318)
|+++|.+-.
T Consensus 502 Ds~~~~~~S 510 (626)
T KOG2106|consen 502 DSQFLVSNS 510 (626)
T ss_pred CCceEEecc
Confidence 999998754
No 148
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=4.6e-18 Score=140.92 Aligned_cols=212 Identities=12% Similarity=0.124 Sum_probs=152.9
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++|+..+.|+|||+....+...+.. |.+. ++++.++-.. .+||+++..|.|.|
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~lkd----h~st---vt~v~YN~~D------------------eyiAsvs~gGdiii 147 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFLKD----HQST---VTYVDYNNTD------------------EYIASVSDGGDIII 147 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhccC----Ccce---eEEEEecCCc------------------ceeEEeccCCcEEE
Confidence 368899999999999985544333222 3332 4456666555 89999999999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
..+.++.. ...|... ...|.-+.|+| ....+|.+++.+|.|.+||+........+.
T Consensus 148 h~~~t~~~--------------tt~f~~~sgqsvRll~ys~------skr~lL~~asd~G~VtlwDv~g~sp~~~~~--- 204 (673)
T KOG4378|consen 148 HGTKTKQK--------------TTTFTIDSGQSVRLLRYSP------SKRFLLSIASDKGAVTLWDVQGMSPIFHAS--- 204 (673)
T ss_pred EecccCcc--------------ccceecCCCCeEEEeeccc------ccceeeEeeccCCeEEEEeccCCCcccchh---
Confidence 99988542 2233322 34567899932 233468888999999999998776655432
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
..|.+|...++|+ |.+..+|++.+.|..|.+|| .+..+ ....+. ...+.+.++|.++|.+|
T Consensus 205 ----------~~HsAP~~gicfs----psne~l~vsVG~Dkki~~yD--~~s~~--s~~~l~-y~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 205 ----------EAHSAPCRGICFS----PSNEALLVSVGYDKKINIYD--IRSQA--STDRLT-YSHPLSTVAFSECGTYL 265 (673)
T ss_pred ----------hhccCCcCcceec----CCccceEEEecccceEEEee--ccccc--ccceee-ecCCcceeeecCCceEE
Confidence 4567789999999 45678899999999999995 44433 233332 45688999999999999
Q ss_pred EEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 258 YSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
+.|...|.|..||++..+..-.. ...|...|++++|-|..
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv~v-------------~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPVAV-------------RSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeecCCceEEEEecccCCCCceE-------------eeecccceeEEEeeecc
Confidence 99999999999999875433211 22355689999998765
No 149
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.3e-17 Score=137.00 Aligned_cols=221 Identities=13% Similarity=0.149 Sum_probs=159.7
Q ss_pred eEEeeCCCceeEeecCC--CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcE
Q 021036 20 TVAASKSKGNSITKIPS--NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKV 96 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i 96 (318)
+++++.|++++|+.+.. +..++.+.... .|+.++.|.++|. .+++++.....
T Consensus 228 llvaG~d~~lrifqvDGk~N~~lqS~~l~~-------------------------fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 228 LLVAGLDGTLRIFQVDGKVNPKLQSIHLEK-------------------------FPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred EEEecCCCcEEEEEecCccChhheeeeecc-------------------------CccceeeecCCCceEEEecccceEE
Confidence 68999999999997654 44444444433 2333334444446 89999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+.||+.+.+. ..+..+.++. ..+..... ++++++|+..+..|.|.+.-..+++.+..++.
T Consensus 283 ysyDle~ak~------------~k~~~~~g~e~~~~e~FeV-------Shd~~fia~~G~~G~I~lLhakT~eli~s~Ki 343 (514)
T KOG2055|consen 283 YSYDLETAKV------------TKLKPPYGVEEKSMERFEV-------SHDSNFIAIAGNNGHIHLLHAKTKELITSFKI 343 (514)
T ss_pred EEeecccccc------------ccccCCCCcccchhheeEe-------cCCCCeEEEcccCceEEeehhhhhhhhheeee
Confidence 9999998663 3344444443 34666777 88999999999999999999999988888775
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC-ceeEEEEcCCC
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ-VVTGLAWAFDG 254 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~ 254 (318)
.. .|..++|+ .+++.|++++.+|.|++|| ++... .++++....+ .-++++.+++|
T Consensus 344 eG---------------~v~~~~fs-----Sdsk~l~~~~~~GeV~v~n--l~~~~--~~~rf~D~G~v~gts~~~S~ng 399 (514)
T KOG2055|consen 344 EG---------------VVSDFTFS-----SDSKELLASGGTGEVYVWN--LRQNS--CLHRFVDDGSVHGTSLCISLNG 399 (514)
T ss_pred cc---------------EEeeEEEe-----cCCcEEEEEcCCceEEEEe--cCCcc--eEEEEeecCccceeeeeecCCC
Confidence 54 78999999 8999999999999999995 44544 5556653221 22567778999
Q ss_pred CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 255 CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 255 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+||+|+..|.|.|||..+...... ..|- ..+..-...|++++|+||+++||.+
T Consensus 400 ~ylA~GS~~GiVNIYd~~s~~~s~~-PkPi-------k~~dNLtt~Itsl~Fn~d~qiLAia 453 (514)
T KOG2055|consen 400 SYLATGSDSGIVNIYDGNSCFASTN-PKPI-------KTVDNLTTAITSLQFNHDAQILAIA 453 (514)
T ss_pred ceEEeccCcceEEEeccchhhccCC-CCch-------hhhhhhheeeeeeeeCcchhhhhhh
Confidence 9999999999999999765322211 1110 1222344589999999999998865
No 150
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=2.2e-16 Score=132.26 Aligned_cols=216 Identities=12% Similarity=0.082 Sum_probs=142.9
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEE-EEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSIL-AVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l-~~g~~dg~i~ 97 (318)
.+++++.|+.+++||+.+++.+..+... .. +..+.|+|++ +.+ ++++.++.|+
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~-----~~---~~~l~~~~dg------------------~~l~~~~~~~~~v~ 56 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFPVG-----QR---PRGITLSKDG------------------KLLYVCASDSDTIQ 56 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEECC-----CC---CCceEECCCC------------------CEEEEEECCCCeEE
Confidence 3578899999999999988765554321 11 2237788777 655 6778899999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+||..+++ ....+..+.. +..+.| +++++.++++ +.|+.+++||+.+++.+..+...
T Consensus 57 ~~d~~~~~--------------~~~~~~~~~~-~~~~~~-------~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~ 114 (300)
T TIGR03866 57 VIDLATGE--------------VIGTLPSGPD-PELFAL-------HPNGKILYIANEDDNLVTVIDIETRKVLAEIPVG 114 (300)
T ss_pred EEECCCCc--------------EEEeccCCCC-ccEEEE-------CCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCC
Confidence 99998754 3344444433 467889 7888766554 56899999999987665544321
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
..+..++|+ |++.++++++.++. +.+| +..+.+ ...... ....+..++|+|+|+
T Consensus 115 ---------------~~~~~~~~~-----~dg~~l~~~~~~~~~~~~~--d~~~~~--~~~~~~-~~~~~~~~~~s~dg~ 169 (300)
T TIGR03866 115 ---------------VEPEGMAVS-----PDGKIVVNTSETTNMAHFI--DTKTYE--IVDNVL-VDQRPRFAEFTADGK 169 (300)
T ss_pred ---------------CCcceEEEC-----CCCCEEEEEecCCCeEEEE--eCCCCe--EEEEEE-cCCCccEEEECCCCC
Confidence 135678998 99999999887754 5566 555554 222222 233457899999999
Q ss_pred EEE-EecCCCcEEEEEecCCceee-eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 256 CLY-SCSQDNFVRSWIFHGNSLSQ-VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 256 ~l~-s~~~d~~v~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+|+ ++..++.|++||+.+++... +....... .........++|+|+++++++
T Consensus 170 ~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~--------~~~~~~~~~i~~s~dg~~~~~ 223 (300)
T TIGR03866 170 ELWVSSEIGGTVSVIDVATRKVIKKITFEIPGV--------HPEAVQPVGIKLTKDGKTAFV 223 (300)
T ss_pred EEEEEcCCCCEEEEEEcCcceeeeeeeeccccc--------ccccCCccceEECCCCCEEEE
Confidence 775 44569999999998875432 22211100 000012346889999887543
No 151
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.79 E-value=2.1e-16 Score=132.35 Aligned_cols=211 Identities=13% Similarity=0.078 Sum_probs=140.8
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE-EecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA-VGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~-~g~~dg~i~ 97 (318)
..++++.++.+++||..+++....+.. +.. ...+.|+|++ +.++ +++.|+.|+
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~~~~~~~----~~~----~~~~~~~~~g------------------~~l~~~~~~~~~l~ 98 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEVIGTLPS----GPD----PELFALHPNG------------------KILYIANEDDNLVT 98 (300)
T ss_pred EEEEECCCCeEEEEECCCCcEEEeccC----CCC----ccEEEECCCC------------------CEEEEEcCCCCeEE
Confidence 346677899999999988765443322 111 1236777777 6554 456789999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEEECCCcceeeeeccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~ 176 (318)
+||+.+.+ .+..+.. ...+.+++| +++++++++++.++ .+.+||..+++........
T Consensus 99 ~~d~~~~~--------------~~~~~~~-~~~~~~~~~-------~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~ 156 (300)
T TIGR03866 99 VIDIETRK--------------VLAEIPV-GVEPEGMAV-------SPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVD 156 (300)
T ss_pred EEECCCCe--------------EEeEeeC-CCCcceEEE-------CCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcC
Confidence 99998743 3344432 234688999 89999999988775 5677898877654433211
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEE-eCCCcEEEeeeccCCCeeeEeeeeecc-----c--CceeEE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG-KGSGSFDLWKCDISCNKFDKVGSYNAH-----D--QVVTGL 248 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~h-----~--~~v~~~ 248 (318)
.....++|+ |++..|+++ ..++.|++| +.++++ .+..+..+ . .....+
T Consensus 157 ---------------~~~~~~~~s-----~dg~~l~~~~~~~~~v~i~--d~~~~~--~~~~~~~~~~~~~~~~~~~~~i 212 (300)
T TIGR03866 157 ---------------QRPRFAEFT-----ADGKELWVSSEIGGTVSVI--DVATRK--VIKKITFEIPGVHPEAVQPVGI 212 (300)
T ss_pred ---------------CCccEEEEC-----CCCCEEEEEcCCCCEEEEE--EcCcce--eeeeeeecccccccccCCccce
Confidence 134678888 899877554 469999999 555554 23333211 1 123568
Q ss_pred EEcCCCCEEEE-ecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLYS-CSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~s-~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|+|++++++. .+.++.+.+||+.+++........ ..+.+++|+|+|++|+++
T Consensus 213 ~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---------------~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 213 KLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---------------QRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred EECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---------------CCcceEEECCCCCEEEEE
Confidence 89999997544 455678999999877665432222 257899999999998764
No 152
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.78 E-value=1.6e-17 Score=141.50 Aligned_cols=217 Identities=17% Similarity=0.248 Sum_probs=139.6
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCC-Cceecc-hhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCL-PLITAD-QYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+...|.++.+-+||.|.++|....... +..... -..|.+++.+ +.|-|. ...|++.+
T Consensus 61 ~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifD---l~wapg------------------e~~lVsas 119 (720)
T KOG0321|consen 61 PNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFD---LKWAPG------------------ESLLVSAS 119 (720)
T ss_pred CCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEe---eccCCC------------------ceeEEEcc
Confidence 345678899999999999998764332 111110 1124454333 666663 48899999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee-
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ- 170 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~- 170 (318)
.|.+++.||+++.++. -...+.+|...|.+++|+|+ +...|++|+.||.+.|||++-...-
T Consensus 120 GDsT~r~Wdvk~s~l~------------G~~~~~GH~~SvkS~cf~~~------n~~vF~tGgRDg~illWD~R~n~~d~ 181 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLV------------GGRLNLGHTGSVKSECFMPT------NPAVFCTGGRDGEILLWDCRCNGVDA 181 (720)
T ss_pred CCceeeeeeeccceee------------cceeecccccccchhhhccC------CCcceeeccCCCcEEEEEEeccchhh
Confidence 9999999999986532 22347899999999999554 3457999999999999999854311
Q ss_pred -e-----eeccccc---cccccee---eeeecccc----eeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCee-
Q 021036 171 -K-----SAEAHCV---PFSLLKE---VVTVNTVP----ISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKF- 232 (318)
Q Consensus 171 -~-----~~~~~~~---~~~~~~~---~~~~~~~~----v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~- 232 (318)
. ....|.. +..+... ...++... |+.+.| .|...||+++. |+.|+|||+......+
T Consensus 182 ~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f------kDe~tlaSaga~D~~iKVWDLRk~~~~~r 255 (720)
T KOG0321|consen 182 LEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF------KDESTLASAGAADSTIKVWDLRKNYTAYR 255 (720)
T ss_pred HHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE------eccceeeeccCCCcceEEEeecccccccc
Confidence 0 0111111 1111111 11122222 445555 68889999887 9999999654322111
Q ss_pred -eE--eeeeecc---cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 233 -DK--VGSYNAH---DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 233 -~~--~~~~~~h---~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
++ ...+..| .-.+.++..+..|.+|++.+.|+.|++|++.+..
T Consensus 256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s 304 (720)
T KOG0321|consen 256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLS 304 (720)
T ss_pred cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccC
Confidence 11 1222223 3356778888888988888889999999998643
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=2.4e-17 Score=129.51 Aligned_cols=241 Identities=12% Similarity=0.083 Sum_probs=151.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...++.|..||.+.|||+.+...-..++ +|..||.++++|++|+.|++++.|..|
T Consensus 35 G~~lAvGc~nG~vvI~D~~T~~iar~ls-------------------------aH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 35 GDYLAVGCANGRVVIYDFDTFRIARMLS-------------------------AHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceeeeeccCCcEEEEEccccchhhhhh-------------------------ccccceeEEEecCCCCEeeeecCCcee
Confidence 3457889999999999998865322332 344444444444444999999999999
Q ss_pred EEEEccCCcccccccc-c-------cC-CceeEEeeeccccccEEEEEe-------eeecC-----------CCCCCCcE
Q 021036 97 SLWRICVPKCYSVEDC-K-------VP-TTAVLIGLFQAHNSWITSISL-------AVLSS-----------DSSNPQVL 149 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~-~-------~~-~~~~~~~~~~~h~~~v~~~~~-------~p~~~-----------~~~~~~~~ 149 (318)
.+||+..|.++....- . .+ ...+.+..+-... + .-+.| .|... ...+.|++
T Consensus 90 ~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s-p-~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~y 167 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES-P-VVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKY 167 (405)
T ss_pred EEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC-c-EEEEecCCceeeccCCCccccccccccccccCCCCE
Confidence 9999999876532110 0 00 0001111110000 0 00000 01100 01567899
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-c-
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-I- 227 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~- 227 (318)
+++|...|.+.++|..+.+++..++... ...|..+.++ ..|+.|++-+.|..|+.|++. +
T Consensus 168 IitGtsKGkllv~~a~t~e~vas~rits-------------~~~IK~I~~s-----~~g~~liiNtsDRvIR~ye~~di~ 229 (405)
T KOG1273|consen 168 IITGTSKGKLLVYDAETLECVASFRITS-------------VQAIKQIIVS-----RKGRFLIINTSDRVIRTYEISDID 229 (405)
T ss_pred EEEecCcceEEEEecchheeeeeeeech-------------heeeeEEEEe-----ccCcEEEEecCCceEEEEehhhhc
Confidence 9999999999999999998887766433 1267888898 899999999999999999643 1
Q ss_pred ---CCCeeeEeeeeec--ccCceeEEEEcCCCCEEEEecCC-CcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 228 ---SCNKFDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQD-NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 228 ---~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
+.++.++.++++. ....-.+++|+.+|.|++.++.. -.++||....|.+..+.....+. ..
T Consensus 230 ~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-------------~l 296 (405)
T KOG1273|consen 230 DEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-------------EL 296 (405)
T ss_pred ccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-------------he
Confidence 2233333333322 12233578899999998877644 46999999888887665444332 34
Q ss_pred eEEEEcCCCcEEEE
Q 021036 302 LGMAVSPGNLVVAM 315 (318)
Q Consensus 302 ~~v~~sp~~~~l~~ 315 (318)
..|.|+|-...|++
T Consensus 297 ~DV~whp~rp~i~s 310 (405)
T KOG1273|consen 297 LDVNWHPVRPIIAS 310 (405)
T ss_pred eecccccceeeeee
Confidence 55566665444443
No 154
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.78 E-value=5.1e-18 Score=139.24 Aligned_cols=198 Identities=19% Similarity=0.164 Sum_probs=151.4
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccc-cccc--cCCceeEEeee-ccccccEEEEEeeeecCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSV-EDCK--VPTTAVLIGLF-QAHNSWITSISLAVLSSDS 143 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-~~~~--~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~ 143 (318)
+..|..++.++.++++..+.++++.||+|.-|++.++..... ...+ ....+.+.+.- +.|...|.+++.
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av------- 210 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV------- 210 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-------
Confidence 445778888889999889999999999999999998874321 0000 00001111111 489999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+++|++|++|+.|..|.||+.++.+.++.+.+|.. .|.+++|- .....+++++.|+.|++|
T Consensus 211 S~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~--------------~V~~L~fr-----~gt~~lys~s~Drsvkvw 271 (479)
T KOG0299|consen 211 SSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG--------------AVSSLAFR-----KGTSELYSASADRSVKVW 271 (479)
T ss_pred cCCCcEEEecCCCceEEEecCcccchhhccccccc--------------ceeeeeee-----cCccceeeeecCCceEEE
Confidence 99999999999999999999999998888776654 89999998 677889999999999999
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
+++ ... .+.++.+|...|.++.-...++.+.+|+.|+++++|++.......+..+ .+.+-+
T Consensus 272 ~~~--~~s--~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~---------------~~sidc 332 (479)
T KOG0299|consen 272 SID--QLS--YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGG---------------EGSIDC 332 (479)
T ss_pred ehh--HhH--HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCC---------------CCCeee
Confidence 544 333 5678889999999998888888788888999999999955444333322 235667
Q ss_pred EEEcCCC
Q 021036 304 MAVSPGN 310 (318)
Q Consensus 304 v~~sp~~ 310 (318)
++|-.+.
T Consensus 333 v~~In~~ 339 (479)
T KOG0299|consen 333 VAFINDE 339 (479)
T ss_pred EEEeccc
Confidence 7776554
No 155
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.7e-17 Score=126.93 Aligned_cols=197 Identities=17% Similarity=0.224 Sum_probs=134.5
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++.|+..|+.+|+|+.|++|+|||.+.+. .+.......+.|.+.|..+.|. ++.-|+.+++++.
T Consensus 17 hdVs~D~~GRRmAtCSsDq~vkI~d~~~~s----------~~W~~Ts~Wrah~~Si~rV~WA-----hPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 17 HDVSFDFYGRRMATCSSDQTVKIWDSTSDS----------GTWSCTSSWRAHDGSIWRVVWA-----HPEFGQVVATCSY 81 (361)
T ss_pred eeeeecccCceeeeccCCCcEEEEeccCCC----------CceEEeeeEEecCCcEEEEEec-----CccccceEEEEec
Confidence 333333334999999999999999975433 1245667889999999999993 3556899999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeec-c-CCCe
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCD-I-SCNK 231 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~-~-~~~~ 231 (318)
|+++.||.-.. ..++.+...+... .........|+++.|. |. |-.+|+++.||.++||+.- . .-..
T Consensus 82 Drtv~iWEE~~----~~~~~~~~~Wv~~-ttl~DsrssV~DV~Fa-----P~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 82 DRTVSIWEEQE----KSEEAHGRRWVRR-TTLVDSRSSVTDVKFA-----PKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred CCceeeeeecc----cccccccceeEEE-EEeecCCcceeEEEec-----chhcceEEEEeccCcEEEEEecCCcccccc
Confidence 99999997531 1122222111111 1223345689999998 54 7789999999999999621 1 1112
Q ss_pred eeEeeeee-------cccCceeEEEEcCC---CCEEEEecCC-----CcEEEEEecCC--ceeeeecCCCCCCccccccC
Q 021036 232 FDKVGSYN-------AHDQVVTGLAWAFD---GCCLYSCSQD-----NFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 232 ~~~~~~~~-------~h~~~v~~~~~~~~---~~~l~s~~~d-----~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~ 294 (318)
+....+++ .+..+..|+.|+|. ..+||.|+.+ +.++||....+ +...+ ..+
T Consensus 152 W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kv------------a~L 219 (361)
T KOG2445|consen 152 WTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKV------------AEL 219 (361)
T ss_pred chhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeee------------hhc
Confidence 22333333 46678889999984 4588888766 57888877543 33332 245
Q ss_pred CCcceeeeEEEEcCC
Q 021036 295 PDAFVSCLGMAVSPG 309 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~ 309 (318)
.+|..+|+.++|.|+
T Consensus 220 ~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 220 PDHTDPIRDISWAPN 234 (361)
T ss_pred CCCCCcceeeeeccc
Confidence 568899999999994
No 156
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=3.7e-17 Score=126.94 Aligned_cols=231 Identities=19% Similarity=0.194 Sum_probs=150.6
Q ss_pred CceeEeecCCCCCCCce-ecchhc--cccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccC
Q 021036 27 KGNSITKIPSNCCLPLI-TADQYA--SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 27 ~~i~iwd~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 103 (318)
..+.||.++........ ...... ....+..+.|+.|.|.+ ..+++-. |..|.+|+++.
T Consensus 93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns------------------~klasm~-dn~i~l~~l~e 153 (370)
T KOG1007|consen 93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS------------------DKLASMD-DNNIVLWSLDE 153 (370)
T ss_pred eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC------------------CeeEEec-cCceEEEEccc
Confidence 35678988764332110 011111 11223345678888876 7777665 88999999987
Q ss_pred CccccccccccCCceeEEee-eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGL-FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 182 (318)
+.... ...... -.++....++-+|+|+ .++..+++. .|+++..||+++.++...+.
T Consensus 154 ss~~v---------aev~ss~s~e~~~~ftsg~WspH-----Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~-------- 210 (370)
T KOG1007|consen 154 SSKIV---------AEVLSSESAEMRHSFTSGAWSPH-----HDGNQVATT-SDSTLQFWDLRTMKKNNSIE-------- 210 (370)
T ss_pred Ccchh---------eeecccccccccceecccccCCC-----CccceEEEe-CCCcEEEEEccchhhhcchh--------
Confidence 64311 011111 1235667788899443 355566655 58999999999887666554
Q ss_pred ceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-CCEEEEe
Q 021036 183 LKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-GCCLYSC 260 (318)
Q Consensus 183 ~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 260 (318)
.+|...|..+.|+ |+ ..+|++|+.||.|++| |.+..+. ++.++.+|...|+++.|+|. .++|++|
T Consensus 211 -----dAHgq~vrdlDfN-----pnkq~~lvt~gDdgyvriW--D~R~tk~-pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 211 -----DAHGQRVRDLDFN-----PNKQHILVTCGDDGYVRIW--DTRKTKF-PVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred -----hhhcceeeeccCC-----CCceEEEEEcCCCccEEEE--eccCCCc-cccccCCCceEEEEEEecCccceEEEec
Confidence 4566678899998 55 5688999999999999 5555443 88999999999999999996 4588999
Q ss_pred cCCCcEEEEEecCCc-eeeeecCCC------------CCCcc-c-cccCCCcceeeeEEEEcCCCcE
Q 021036 261 SQDNFVRSWIFHGNS-LSQVSIPTN------------TPGLQ-S-CTDLPDAFVSCLGMAVSPGNLV 312 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~-~~~~~~~~~------------~~~~~-~-~~~~~~h~~~v~~v~~sp~~~~ 312 (318)
+.|..|.+|....-. ..++..... .+.|. | -.+...|...|++++|+.-..+
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW 344 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW 344 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe
Confidence 999999999875411 111111100 01111 1 1245689999999999974333
No 157
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=8.7e-18 Score=136.63 Aligned_cols=189 Identities=19% Similarity=0.120 Sum_probs=135.4
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
..++++.+|..|++|+.||.+|||+.... ..+.....|...|.++.| +++|++|++-+.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~--------------~t~l~e~~~~~eV~DL~F-------S~dgk~lasig~ 206 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM--------------LTILEEIAHHAEVKDLDF-------SPDGKFLASIGA 206 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc--------------hhhhhhHhhcCcccccee-------CCCCcEEEEecC
Confidence 45666777799999999999999997653 344566789999999999 999999999999
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-----eEEEEEeCCCcEEEeeeccCCC
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-----MLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-----~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
| ..+||+.+++..+........ +.....+.|+ .++ .+++....-+.|+.|++....+
T Consensus 207 d-~~~VW~~~~g~~~a~~t~~~k------------~~~~~~cRF~-----~d~~~~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 207 D-SARVWSVNTGAALARKTPFSK------------DEMFSSCRFS-----VDNAQETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred C-ceEEEEeccCchhhhcCCccc------------chhhhhceec-----ccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence 9 999999999965554432221 2234555666 333 3344444556677765433222
Q ss_pred e-eeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 231 K-FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 231 ~-~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
. .-+..+...-...|++++.+++|++++.|+.||.|-|++..+-+...+..+. |...|+.+.|+||
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a-------------H~~~VT~ltF~Pd 335 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA-------------HLGFVTGLTFSPD 335 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh-------------heeeeeeEEEcCC
Confidence 1 0011111222347899999999999999999999999998775555443333 7789999999999
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
.+++++.
T Consensus 336 sr~~~sv 342 (398)
T KOG0771|consen 336 SRYLASV 342 (398)
T ss_pred cCccccc
Confidence 9988763
No 158
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=3.4e-17 Score=132.56 Aligned_cols=138 Identities=25% Similarity=0.226 Sum_probs=102.0
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
+.++||+.|..||+|.++.+.--..- .. +.+ ...+.+|..+|+++.|+++|.+||+|+.+|.|.
T Consensus 27 ~~laT~G~D~~iriW~v~r~~~~~~~--------~~------V~y--~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~ 90 (434)
T KOG1009|consen 27 NKLATAGGDKDIRIWKVNRSEPGGGD--------MK------VEY--LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVF 90 (434)
T ss_pred cceecccCccceeeeeeeecCCCCCc--------ee------EEE--eecccCCcceeEEEEEcCCcCeeeecCCCceEE
Confidence 37899999999999988765432210 00 222 124677888899999999999999999999999
Q ss_pred EEEccCCccccc--cccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 98 LWRICVPKCYSV--EDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 98 iw~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
+|-...-..... +.....+.....+.+.+|...|..++| ++++.++++++.|..+++||+..|+....+..
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W-------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d 163 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW-------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD 163 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc-------cCCCceeeeeeccceEEEEEeccceeEeeccc
Confidence 998773111000 001112224456677899999999999 99999999999999999999999998887765
Q ss_pred ccc
Q 021036 176 HCV 178 (318)
Q Consensus 176 ~~~ 178 (318)
|..
T Consensus 164 h~~ 166 (434)
T KOG1009|consen 164 HEH 166 (434)
T ss_pred ccc
Confidence 553
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=7e-18 Score=136.47 Aligned_cols=220 Identities=16% Similarity=0.178 Sum_probs=155.9
Q ss_pred ccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 73 YPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 73 ~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
.+|..++|.++.. .+++|+.|..|+||.++.++.-. .....+.+..+..|...|+++.| +++|++|+
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~-----~~~~V~y~s~Ls~H~~aVN~vRf-------~p~gelLA 81 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG-----GDMKVEYLSSLSRHTRAVNVVRF-------SPDGELLA 81 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCC-----CceeEEEeecccCCcceeEEEEE-------cCCcCeee
Confidence 4677777776644 99999999999999997644210 00124566778899999999999 99999999
Q ss_pred EEeCCCcEEEEECCCcceeeeecccc-----cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 152 TGSSDGSVRIWDGYIQELQKSAEAHC-----VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+|+.+|.|.+|....-... .... .+.-..+....+|...++.++|+ |++.++++++.|..+++| |
T Consensus 82 Sg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws-----~d~~~l~s~s~dns~~l~--D 151 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWS-----PDSNFLVSGSVDNSVRLW--D 151 (434)
T ss_pred ecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhcc-----CCCceeeeeeccceEEEE--E
Confidence 9999999999987631111 1111 12223345556788899999999 999999999999999999 6
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc---ccccC--CCc----
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ---SCTDL--PDA---- 297 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~---~~~~~--~~h---- 297 (318)
...+. ....+.+|...+..++|.|-++++++-+.|...+.+++..............+..+ +.... .-|
T Consensus 152 v~~G~--l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTl 229 (434)
T KOG1009|consen 152 VHAGQ--LLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETL 229 (434)
T ss_pred eccce--eEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCch
Confidence 66776 66778889999999999999999999999998888887653332211100000000 00000 011
Q ss_pred ceeeeEEEEcCCCcEEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~ 316 (318)
..-...++|+|||..+++.
T Consensus 230 ksFFrRlsfTPdG~llvtP 248 (434)
T KOG1009|consen 230 KSFFRRLSFTPDGSLLVTP 248 (434)
T ss_pred hhhhhhcccCCCCcEEEcc
Confidence 1234578999999988864
No 160
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=6e-17 Score=126.79 Aligned_cols=180 Identities=17% Similarity=0.160 Sum_probs=128.7
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|.++.|++.++.|++++.||++++|++...+ ++..-.|..++.+.+| .+ ...+++|+
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~~~---------------l~~~~~~~~plL~c~F-------~d-~~~~~~G~ 72 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPANS---------------LKLKFKHGAPLLDCAF-------AD-ESTIVTGG 72 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccchh---------------hhhheecCCceeeeec-------cC-CceEEEec
Confidence 3344444444888888899999999998742 2223358899999999 33 45799999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||.|+.+|+.++..... ..|..++.++..+ +....+++|++|++|++| |.+... .
T Consensus 73 ~dg~vr~~Dln~~~~~~i---------------gth~~~i~ci~~~-----~~~~~vIsgsWD~~ik~w--D~R~~~--~ 128 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQI---------------GTHDEGIRCIEYS-----YEVGCVISGSWDKTIKFW--DPRNKV--V 128 (323)
T ss_pred cCceEEEEEecCCcceee---------------ccCCCceEEEEee-----ccCCeEEEcccCccEEEE--eccccc--c
Confidence 999999999998764432 2245589999999 788899999999999999 666533 3
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
+..+. ....|.++... |..|+.|+.|..|.+||+++-... +....+. .-.+++|++-|++.-.
T Consensus 129 ~~~~d-~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-------------kyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 129 VGTFD-QGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-------------KYQTRCVALVPNGEGY 192 (323)
T ss_pred ccccc-cCceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccc-------------eeEEEEEEEecCCCce
Confidence 33333 34478887655 778999999999999999874332 1111111 1267888888866555
Q ss_pred EEEe
Q 021036 314 AMVQ 317 (318)
Q Consensus 314 ~~~~ 317 (318)
+++.
T Consensus 193 ~~sS 196 (323)
T KOG1036|consen 193 VVSS 196 (323)
T ss_pred EEEe
Confidence 5543
No 161
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.76 E-value=1.2e-17 Score=144.11 Aligned_cols=194 Identities=18% Similarity=0.189 Sum_probs=149.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+++|..-|++|++|+.+.+.+-.+.+ |... ++|+.++... + ..++||+++.|..|
T Consensus 471 gqhLAsGDr~GnlrVy~Lq~l~~~~~~eA----HesE---ilcLeyS~p~---------~------~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 471 GQHLASGDRGGNLRVYDLQELEYTCFMEA----HESE---ILCLEYSFPV---------L------TNKLLASASRDRLI 528 (1080)
T ss_pred cceecccCccCceEEEEehhhhhhhheec----ccce---eEEEeecCch---------h------hhHhhhhccCCceE
Confidence 34467777889999999988766555554 4444 4456665321 0 13799999999999
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccc-----------------------------------------------
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS----------------------------------------------- 129 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----------------------------------------------- 129 (318)
.++|+...- .+++++.+|..
T Consensus 529 HV~Dv~rny-------------~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ 595 (1080)
T KOG1408|consen 529 HVYDVKRNY-------------DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLS 595 (1080)
T ss_pred EEEeccccc-------------chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccc
Confidence 999997532 22233333333
Q ss_pred --cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 130 --WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 130 --~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.++.++. .|..+++++++.|+.|+|||+.+++..+.|++... +.+..--+... |.
T Consensus 596 ktTlYDm~V-------dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~-----------~eG~lIKv~lD-----PS 652 (1080)
T KOG1408|consen 596 KTTLYDMAV-------DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRD-----------HEGDLIKVILD-----PS 652 (1080)
T ss_pred cceEEEeee-------CCCcceEEEEecccceEEEeccccceeeeeccccc-----------CCCceEEEEEC-----CC
Confidence 3555555 56677999999999999999999999998886543 34455566777 99
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
|.++++.+.|.++.+| |..+++ ++.++.||...|+.+.|.+|-+.|++.+.||.|++|.+.
T Consensus 653 giY~atScsdktl~~~--Df~sgE--cvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFV--DFVSGE--CVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccEEEEeecCCceEEE--Eeccch--hhhhhcCcchheeeeeecccchhheeecCCceEEEEECc
Confidence 9999999999999999 566776 788999999999999999999999999999999999885
No 162
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.76 E-value=2.1e-17 Score=135.56 Aligned_cols=202 Identities=15% Similarity=0.147 Sum_probs=141.2
Q ss_pred CCCCcccccccCCCCCc--cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWF--SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN 145 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~ 145 (318)
.+.+...|++++|.|.. +++|+|..-|.|-+||+.+.+.. ..-+..+..|..+|.+|.|. +.
T Consensus 182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d----------~d~v~~f~~hs~~Vs~l~F~------P~ 245 (498)
T KOG4328|consen 182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD----------KDGVYLFTPHSGPVSGLKFS------PA 245 (498)
T ss_pred eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc----------cCceEEeccCCccccceEec------CC
Confidence 44566777788887753 68999999999999999632211 23455678899999999993 34
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+...+++.|.||+|++-|++++.....+.... ....++.+.++ .+...++.+..=|...+||.
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~------------d~~~fs~~d~~-----~e~~~vl~~~~~G~f~~iD~ 308 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDT------------DNIWFSSLDFS-----AESRSVLFGDNVGNFNVIDL 308 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhHHHhhcCc------------cceeeeecccc-----CCCccEEEeecccceEEEEe
Confidence 45679999999999999998764333222211 12256677776 56666667776779999965
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
+....+ ...+.-|...|..|+++|.. .+|||++.|++++|||++.-....-+.- ....|.-.|.++
T Consensus 309 R~~~s~---~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~l----------st~~HrrsV~sA 375 (498)
T KOG4328|consen 309 RTDGSE---YENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFL----------STLPHRRSVNSA 375 (498)
T ss_pred ecCCcc---chhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcce----------ecccccceeeee
Confidence 544433 33455688899999999965 4899999999999999986221110000 122377799999
Q ss_pred EEcCCCcEEEE
Q 021036 305 AVSPGNLVVAM 315 (318)
Q Consensus 305 ~~sp~~~~l~~ 315 (318)
.|||.+-.|+|
T Consensus 376 yFSPs~gtl~T 386 (498)
T KOG4328|consen 376 YFSPSGGTLLT 386 (498)
T ss_pred EEcCCCCceEe
Confidence 99996544554
No 163
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=3.4e-17 Score=137.69 Aligned_cols=220 Identities=15% Similarity=0.173 Sum_probs=163.5
Q ss_pred eeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeee
Q 021036 60 VAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139 (318)
Q Consensus 60 ~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 139 (318)
..|++...+..|...+..+.+.+....|++++.||.+++|+++... ..-....+++.+|.+|.++|.|+++
T Consensus 282 k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~------~s~~~~~epi~tfraH~gPVl~v~v--- 352 (577)
T KOG0642|consen 282 KKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK------KSAEKDVEPILTFRAHEGPVLCVVV--- 352 (577)
T ss_pred eecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC------CccccceeeeEEEecccCceEEEEe---
Confidence 6799888888899999999999999999999999999999994311 0111225788899999999999999
Q ss_pred cCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 140 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
+.+++.+++|+-||+|+.|++.... -....+ ..+.+.....+|...++.++++ +....|++++.||+
T Consensus 353 ----~~n~~~~ysgg~Dg~I~~w~~p~n~--dp~ds~--dp~vl~~~l~Ghtdavw~l~~s-----~~~~~Llscs~DgT 419 (577)
T KOG0642|consen 353 ----PSNGEHCYSGGIDGTIRCWNLPPNQ--DPDDSY--DPSVLSGTLLGHTDAVWLLALS-----STKDRLLSCSSDGT 419 (577)
T ss_pred ----cCCceEEEeeccCceeeeeccCCCC--Cccccc--Ccchhccceeccccceeeeeec-----ccccceeeecCCce
Confidence 9999999999999999999876221 111111 1223345567788899999999 88889999999999
Q ss_pred EEEeeeccCCCee---e-------Ee--------------------------------eeee--c-----ccCceeEEEE
Q 021036 220 FDLWKCDISCNKF---D-------KV--------------------------------GSYN--A-----HDQVVTGLAW 250 (318)
Q Consensus 220 i~vw~~~~~~~~~---~-------~~--------------------------------~~~~--~-----h~~~v~~~~~ 250 (318)
+++|+. ..... . +. ..+. . -...+..+.+
T Consensus 420 vr~w~~--~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs 497 (577)
T KOG0642|consen 420 VRLWEP--TEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVS 497 (577)
T ss_pred EEeecc--CCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEe
Confidence 999962 11110 0 00 0000 0 0123456778
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|.+.+.+++..|+.|+++|..++.+.. ....|...++++++.|+|.+|++|.
T Consensus 498 ~~~~~~~~~~hed~~Ir~~dn~~~~~l~--------------s~~a~~~svtslai~~ng~~l~s~s 550 (577)
T KOG0642|consen 498 HPTADITFTAHEDRSIRFFDNKTGKILH--------------SMVAHKDSVTSLAIDPNGPYLMSGS 550 (577)
T ss_pred cCCCCeeEecccCCceecccccccccch--------------heeeccceecceeecCCCceEEeec
Confidence 8888899999999999999988876553 1223445889999999999999873
No 164
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.76 E-value=5.2e-16 Score=129.09 Aligned_cols=232 Identities=13% Similarity=0.107 Sum_probs=161.8
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+-|.+.+.+++.+. +.+..|+.+.+...+...... ..+. ..++|+.|.+.+ -+++|.
T Consensus 208 FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fe--k~ek-k~Vl~v~F~eng-------------------dviTgD 264 (626)
T KOG2106|consen 208 FHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFE--KREK-KFVLCVTFLENG-------------------DVITGD 264 (626)
T ss_pred eccCCCcEEEEeCC-ceEEEEEccCCceEEEeeccc--cccc-eEEEEEEEcCCC-------------------CEEeec
Confidence 33444555565554 468889888776544433222 2222 446677777766 568999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.+|.|.||+..+. +..+....|.+.|.+++- ..+|.+ ++|+.|+.|..||-.- +...
T Consensus 265 S~G~i~Iw~~~~~--------------~~~k~~~aH~ggv~~L~~-------lr~Gtl-lSGgKDRki~~Wd~~y-~k~r 321 (626)
T KOG2106|consen 265 SGGNILIWSKGTN--------------RISKQVHAHDGGVFSLCM-------LRDGTL-LSGGKDRKIILWDDNY-RKLR 321 (626)
T ss_pred CCceEEEEeCCCc--------------eEEeEeeecCCceEEEEE-------ecCccE-eecCccceEEeccccc-cccc
Confidence 9999999999763 333444599999999999 778855 5599999999999332 2111
Q ss_pred eecccc--ccccc-------------------------ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 172 SAEAHC--VPFSL-------------------------LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 172 ~~~~~~--~~~~~-------------------------~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..+..+ .+.+. ......+|......++.+ |+.+++++++.|+.+++|
T Consensus 322 ~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~h-----ps~~q~~T~gqdk~v~lW- 395 (626)
T KOG2106|consen 322 ETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATH-----PSKNQLLTCGQDKHVRLW- 395 (626)
T ss_pred cccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcC-----CChhheeeccCcceEEEc-
Confidence 111110 11111 113445677788889998 999999999999999999
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
+ ..+ ++.+. .-..++.++.|+|.| .+|.|...|...+.|..+..+.++... . .+++.|
T Consensus 396 -~--~~k--~~wt~-~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~-------------~~ls~v 453 (626)
T KOG2106|consen 396 -N--DHK--LEWTK-IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--N-------------EQLSVV 453 (626)
T ss_pred -c--CCc--eeEEE-EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec--C-------------CceEEE
Confidence 4 333 22222 245678999999999 899999999999999988666655443 2 388999
Q ss_pred EEcCCCcEEEEEe
Q 021036 305 AVSPGNLVVAMVQ 317 (318)
Q Consensus 305 ~~sp~~~~l~~~~ 317 (318)
+|+|+|.+||.|.
T Consensus 454 ~ysp~G~~lAvgs 466 (626)
T KOG2106|consen 454 RYSPDGAFLAVGS 466 (626)
T ss_pred EEcCCCCEEEEec
Confidence 9999999999874
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=1.1e-16 Score=129.35 Aligned_cols=169 Identities=15% Similarity=0.149 Sum_probs=131.4
Q ss_pred CCCCcccccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
..+|..+|++++++|. .+.||+|+.|.+|.||.+-.+.... .-..++..+.+|...|.-+.|+|. .
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~-------~ltepvv~L~gH~rrVg~V~wHPt------A 143 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTR-------DLTEPVVELYGHQRRVGLVQWHPT------A 143 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCccccc-------CcccceEEEeecceeEEEEeeccc------c
Confidence 3467777777777774 6789999999999999997543211 002567789999999999999554 3
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
.+.|++++.|.+|.+|++.+|+.+-++. | ...|++++|+ .+|.+|++.+.|.+|+|| |
T Consensus 144 ~NVLlsag~Dn~v~iWnv~tgeali~l~-h--------------pd~i~S~sfn-----~dGs~l~TtckDKkvRv~--d 201 (472)
T KOG0303|consen 144 PNVLLSAGSDNTVSIWNVGTGEALITLD-H--------------PDMVYSMSFN-----RDGSLLCTTCKDKKVRVI--D 201 (472)
T ss_pred hhhHhhccCCceEEEEeccCCceeeecC-C--------------CCeEEEEEec-----cCCceeeeecccceeEEE--c
Confidence 3579999999999999999998877765 3 3489999999 899999999999999999 7
Q ss_pred cCCCeeeEeeeeecccC-ceeEEEEcCCCCEEEEe---cCCCcEEEEEecC
Q 021036 227 ISCNKFDKVGSYNAHDQ-VVTGLAWAFDGCCLYSC---SQDNFVRSWIFHG 273 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~ 273 (318)
.++++ .+.+-.+|.+ .-..+.|-.+|.++-|| ..+..+-+||...
T Consensus 202 pr~~~--~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~n 250 (472)
T KOG0303|consen 202 PRRGT--VVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNN 250 (472)
T ss_pred CCCCc--EeeecccccCCCcceeEEeccCceeeeccccccccceeccCccc
Confidence 88887 5555566765 34556788888855444 3578899998764
No 166
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3e-16 Score=134.67 Aligned_cols=161 Identities=19% Similarity=0.263 Sum_probs=130.0
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
|.+++++...+.||.+-.||.|-||++..+-+ +...+.++ ...|.+++| . ++..|++.
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~-------------~~~vi~g~~drsIE~L~W-------~-e~~RLFS~ 86 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWF-------------LEPVIHGPEDRSIESLAW-------A-EGGRLFSS 86 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCce-------------eeEEEecCCCCceeeEEE-------c-cCCeEEee
Confidence 77777777779999999999999999987432 23344444 568999999 5 45578888
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
+.+|.|.-||+.+++....+.... +.|.+++.+ |.+..++.|+.||.++.+ +...++.+
T Consensus 87 g~sg~i~EwDl~~lk~~~~~d~~g--------------g~IWsiai~-----p~~~~l~IgcddGvl~~~--s~~p~~I~ 145 (691)
T KOG2048|consen 87 GLSGSITEWDLHTLKQKYNIDSNG--------------GAIWSIAIN-----PENTILAIGCDDGVLYDF--SIGPDKIT 145 (691)
T ss_pred cCCceEEEEecccCceeEEecCCC--------------cceeEEEeC-----CccceEEeecCCceEEEE--ecCCceEE
Confidence 899999999999998777665443 489999999 899999999999966665 66666655
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.-..+...++.|.+++|+|++..+++|+.||.|++||...+...
T Consensus 146 ~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 146 YKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTL 189 (691)
T ss_pred EEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceE
Confidence 55556667789999999999999999999999999999875543
No 167
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.6e-17 Score=129.12 Aligned_cols=182 Identities=19% Similarity=0.201 Sum_probs=131.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC--CCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN--PQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~--~~~~l~s~~~d~~v~iw 162 (318)
+.+|++...|.|++||..++ +.+..++++...++.++| .. ....+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~tg--------------~~l~~fk~~~~~~N~vrf-------~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG--------------QLLEEFKGPPATTNGVRF-------ISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccch--------------hhhheecCCCCcccceEE-------ecCCCCCeeEEeccCCeEEEE
Confidence 67899999999999999984 466789999999999999 33 45679999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe----CCCcEEEeeeccCCCeeeEeee-
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK----GSGSFDLWKCDISCNKFDKVGS- 237 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~----~dg~i~vw~~~~~~~~~~~~~~- 237 (318)
|++.......+.-...+ ..+..+++.. ..++++++|. .+-.+.+||++.+.. ++..
T Consensus 100 D~Rs~~e~a~~~~~~~~-----------~~~f~~ld~n-----ck~~ii~~GtE~~~s~A~v~lwDvR~~qq---~l~~~ 160 (376)
T KOG1188|consen 100 DIRSQAESARISWTQQS-----------GTPFICLDLN-----CKKNIIACGTELTRSDASVVLWDVRSEQQ---LLRQL 160 (376)
T ss_pred EeecchhhhheeccCCC-----------CCcceEeecc-----CcCCeEEeccccccCceEEEEEEeccccc---hhhhh
Confidence 99976555443322211 2355666665 5778888876 567799996654443 2333
Q ss_pred eecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC--cEEE
Q 021036 238 YNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN--LVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~--~~l~ 314 (318)
...|...|+++.|+|. ..+|++||.||-|.+||+.......-..+ -..|...|-.+.|..++ ++..
T Consensus 161 ~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~-----------viN~~sSI~~igw~~~~ykrI~c 229 (376)
T KOG1188|consen 161 NESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH-----------VINHGSSIHLIGWLSKKYKRIMC 229 (376)
T ss_pred hhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH-----------hhcccceeeeeeeecCCcceEEE
Confidence 3569999999999995 56999999999999999986532211100 11244578888888877 5555
Q ss_pred EEe
Q 021036 315 MVQ 317 (318)
Q Consensus 315 ~~~ 317 (318)
..|
T Consensus 230 lTH 232 (376)
T KOG1188|consen 230 LTH 232 (376)
T ss_pred EEc
Confidence 443
No 168
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2e-16 Score=141.99 Aligned_cols=234 Identities=21% Similarity=0.222 Sum_probs=151.4
Q ss_pred ccceEEeeCCCceeEee-cCCC-CCCCceecchh--c-cccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 17 THPTVAASKSKGNSITK-IPSN-CCLPLITADQY--A-SRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd-~~~~-~~~~~~~~~~~--~-~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
...+++||.||.||||+ +... +..+.++...- . ..........+.|.... .+|+++|
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~------------------G~Ll~tG 1184 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS------------------GHLLVTG 1184 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC------------------CeEEecC
Confidence 34479999999999994 5544 22222222110 0 00111123457787776 5666666
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce-
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL- 169 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~- 169 (318)
.-..|+|||..... ....+. +-..-|+++.- +...|+.+++|..||.|++||.+....
T Consensus 1185 d~r~IRIWDa~~E~--------------~~~diP~~s~t~vTaLS~------~~~~gn~i~AGfaDGsvRvyD~R~a~~d 1244 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQ--------------VVADIPYGSSTLVTALSA------DLVHGNIIAAGFADGSVRVYDRRMAPPD 1244 (1387)
T ss_pred CeeEEEEEecccce--------------eEeecccCCCccceeecc------cccCCceEEEeecCCceEEeecccCCcc
Confidence 68899999998633 333332 33455677765 355689999999999999999885322
Q ss_pred --eeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEeeeeecc---cC
Q 021036 170 --QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH---DQ 243 (318)
Q Consensus 170 --~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h---~~ 243 (318)
+.....|.. ..+|..+.+. +.|. .|++|+.||.|++||+.+.... ...+...| .+
T Consensus 1245 s~v~~~R~h~~------------~~~Iv~~slq-----~~G~~elvSgs~~G~I~~~DlR~~~~e--~~~~iv~~~~yGs 1305 (1387)
T KOG1517|consen 1245 SLVCVYREHND------------VEPIVHLSLQ-----RQGLGELVSGSQDGDIQLLDLRMSSKE--TFLTIVAHWEYGS 1305 (1387)
T ss_pred ccceeecccCC------------cccceeEEee-----cCCCcceeeeccCCeEEEEecccCccc--ccceeeeccccCc
Confidence 222222221 1137788887 5553 5999999999999966553111 22222223 23
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+++..+++...+|+|+. +.|+||++.+.++..+..++.. +....+.+.+++|+|-.-++|+|
T Consensus 1306 ~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F--------~~q~~gs~scL~FHP~~~llAaG 1369 (1387)
T KOG1517|consen 1306 ALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGF--------MGQRIGSVSCLAFHPHRLLLAAG 1369 (1387)
T ss_pred cceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCccc--------ccCcCCCcceeeecchhHhhhhc
Confidence 5899999999999999998 9999999998877766654321 11123466899999988777766
No 169
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=1.3e-16 Score=125.62 Aligned_cols=208 Identities=14% Similarity=0.114 Sum_probs=148.6
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
+|+|.++++++..+|.+.....|.||.....+. .+...+++.|...|++++| .+..+.|++|
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~~~htls~Hd~~vtgvdW-------ap~snrIvtc 73 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WEPAHTLSEHDKIVTGVDW-------APKSNRIVTC 73 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ceeceehhhhCcceeEEee-------cCCCCceeEc
Confidence 344444444449999999999999999987553 3577889999999999999 8888899999
Q ss_pred eCCCcEEEEECCC-cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 154 SSDGSVRIWDGYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 154 ~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
+.|..-++|.... ++-..++.. .-+....+++.|+ |.++.||+|+....|.||-+..+..-+
T Consensus 74 s~drnayVw~~~~~~~WkptlvL------------lRiNrAAt~V~Ws-----P~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVL------------LRINRAATCVKWS-----PKENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred cCCCCccccccCCCCeeccceeE------------EEeccceeeEeec-----CcCceEEeccCccEEEEEEEeccccee
Confidence 9999999999843 333332221 1234478999999 999999999999999999655444332
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee-cCCCCCCcc---ccccCCCcceeeeEEEEcC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS-IPTNTPGLQ---SCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~---~~~~~~~h~~~v~~v~~sp 308 (318)
-..+.-+.+...|++++|+|++-+|++|+.|+.+++|...-..+...+ ..+-+..+. -..+.....+.+.++.|+|
T Consensus 137 VsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~ 216 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP 216 (361)
T ss_pred hhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCC
Confidence 221222346788999999999999999999999999986433222211 111111111 1112224557899999999
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
+|..|+-+
T Consensus 217 sG~~lawv 224 (361)
T KOG1523|consen 217 SGNRLAWV 224 (361)
T ss_pred CCCEeeEe
Confidence 99888743
No 170
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=6e-16 Score=117.58 Aligned_cols=180 Identities=19% Similarity=0.198 Sum_probs=120.7
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
+.-+++|.+++|++|..+|.|-+..++.-..- ...+.....+..+++|.++|+.++| . .++|++|+
T Consensus 14 f~qa~sp~~~~l~agn~~G~iav~sl~sl~s~----sa~~~gk~~iv~eqahdgpiy~~~f-------~--d~~Lls~g- 79 (325)
T KOG0649|consen 14 FAQAISPSKQYLFAGNLFGDIAVLSLKSLDSG----SAEPPGKLKIVPEQAHDGPIYYLAF-------H--DDFLLSGG- 79 (325)
T ss_pred HHHhhCCcceEEEEecCCCeEEEEEehhhhcc----ccCCCCCcceeeccccCCCeeeeee-------e--hhheeecc-
Confidence 33344444499999999999999998742110 0111122345566899999999999 3 44566665
Q ss_pred CCcEEEEECCCcceeeeec-c--cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 156 DGSVRIWDGYIQELQKSAE-A--HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
||.|+=|.-+....-...+ . ...|. +.-...-..|+++-+. |..+-++.++.|+.++-| |+++++
T Consensus 80 dG~V~gw~W~E~~es~~~K~lwe~~~P~----~~~~~evPeINam~ld-----P~enSi~~AgGD~~~y~~--dlE~G~- 147 (325)
T KOG0649|consen 80 DGLVYGWEWNEEEESLATKRLWEVKIPM----QVDAVEVPEINAMWLD-----PSENSILFAGGDGVIYQV--DLEDGR- 147 (325)
T ss_pred CceEEEeeehhhhhhccchhhhhhcCcc----ccCcccCCccceeEec-----cCCCcEEEecCCeEEEEE--EecCCE-
Confidence 5999999876432210000 0 00000 0001112368888888 666666666689999998 777888
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
...++++|+..|.++.--.....+++|++||++|+||+++++..+....
T Consensus 148 -i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 148 -IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred -EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEecc
Confidence 5568999999999998755555799999999999999999877655443
No 171
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.73 E-value=8.4e-17 Score=138.33 Aligned_cols=200 Identities=15% Similarity=0.099 Sum_probs=146.3
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCc-----EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGK-----VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD 142 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 142 (318)
+.+|.++|++++.+|+|+++|++++... |++|+..+ ...++.+.+|+-.|+.++|
T Consensus 521 LYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~--------------W~~~~~L~~HsLTVT~l~F------ 580 (764)
T KOG1063|consen 521 LYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN--------------WLQVQELEGHSLTVTRLAF------ 580 (764)
T ss_pred hccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc--------------hhhhheecccceEEEEEEE------
Confidence 7799999999999999999999987553 88999876 4455678999999999999
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEE
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~v 222 (318)
+++|++|++.++|+++.+|......... +. ......|..-|.+..|+ |++.+|+|+|.|.+|++
T Consensus 581 -Spdg~~LLsvsRDRt~sl~~~~~~~~~e-~~---------fa~~k~HtRIIWdcsW~-----pde~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 581 -SPDGRYLLSVSRDRTVSLYEVQEDIKDE-FR---------FACLKAHTRIIWDCSWS-----PDEKYFATASRDKKVKV 644 (764)
T ss_pred -CCCCcEEEEeecCceEEeeeeecccchh-hh---------hccccccceEEEEcccC-----cccceeEEecCCceEEE
Confidence 9999999999999999999875432111 11 01134566788999998 99999999999999999
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcCC-----CCEEEEecCCCcEEEEEecCCc-e---eeeecCCCCCCcccccc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-----GCCLYSCSQDNFVRSWIFHGNS-L---SQVSIPTNTPGLQSCTD 293 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~~l~s~~~d~~v~iwd~~~~~-~---~~~~~~~~~~~~~~~~~ 293 (318)
|...-...++.+-.....+...|++++|.|- +..++.|-+.|.|.+|...... . ....... ....
T Consensus 645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~------~l~~ 718 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDT------RLCA 718 (764)
T ss_pred EeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeecc------cccc
Confidence 9533221121111123457889999999873 2367888999999999865211 1 1111101 1124
Q ss_pred CCCcceeeeEEEEcCC
Q 021036 294 LPDAFVSCLGMAVSPG 309 (318)
Q Consensus 294 ~~~h~~~v~~v~~sp~ 309 (318)
...|...|+.+.|.|.
T Consensus 719 ~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 719 TIGPDSAVNRLLWRPT 734 (764)
T ss_pred ccChHHhhheeEeccc
Confidence 4567889999999975
No 172
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.72 E-value=3.5e-17 Score=139.64 Aligned_cols=196 Identities=18% Similarity=0.212 Sum_probs=145.9
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEcc
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRIC 102 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~ 102 (318)
++.-|.|-|+++...-.++.-..........+ +.+.|+|-. ...||+++.||.|+||.+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~v---tDl~WdPFD-----------------~~rLAVa~ddg~i~lWr~~ 658 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLV---TDLHWDPFD-----------------DERLAVATDDGQINLWRLT 658 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCcee---eecccCCCC-----------------hHHeeecccCceEEEEEec
Confidence 45578899999988655555444444444443 348999876 5899999999999999998
Q ss_pred CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc
Q 021036 103 VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL 182 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 182 (318)
.+.... ....+...+..|...|++++|+|.. .+.|++++.|-+|++||+++++....+.+|..
T Consensus 659 a~gl~e-------~~~tPe~~lt~h~eKI~slRfHPLA------advLa~asyd~Ti~lWDl~~~~~~~~l~gHtd---- 721 (1012)
T KOG1445|consen 659 ANGLPE-------NEMTPEKILTIHGEKITSLRFHPLA------ADVLAVASYDSTIELWDLANAKLYSRLVGHTD---- 721 (1012)
T ss_pred cCCCCc-------ccCCcceeeecccceEEEEEecchh------hhHhhhhhccceeeeeehhhhhhhheeccCcC----
Confidence 653211 0123456788999999999996654 35699999999999999999988777776655
Q ss_pred ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEec
Q 021036 183 LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSCS 261 (318)
Q Consensus 183 ~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~ 261 (318)
.|..++|+ |+|+.+|+.+.||+|++| +.+..+ +++++-++-. ..--.+.|--+|+++++.+
T Consensus 722 ----------qIf~~AWS-----pdGr~~AtVcKDg~~rVy--~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 722 ----------QIFGIAWS-----PDGRRIATVCKDGTLRVY--EPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred ----------ceeEEEEC-----CCCcceeeeecCceEEEe--CCCCCC-CccccCCCCccCcceeEEEEecCcEEEEec
Confidence 89999999 999999999999999999 555543 2444433221 2224577888999888877
Q ss_pred CC----CcEEEEEecC
Q 021036 262 QD----NFVRSWIFHG 273 (318)
Q Consensus 262 ~d----~~v~iwd~~~ 273 (318)
.| +.|.+||..+
T Consensus 784 fdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQT 799 (1012)
T ss_pred ccccchhhhhhhhhhh
Confidence 66 5688888764
No 173
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=2.7e-16 Score=131.73 Aligned_cols=185 Identities=19% Similarity=0.243 Sum_probs=135.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..|+.++.||.+.|.+-. ++..+.+.+|.+.|.+-+| +++|.-|++++.||.|++|.-
T Consensus 76 d~~~i~s~DGkf~il~k~---------------~rVE~sv~AH~~A~~~gRW-------~~dGtgLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS---------------ARVERSISAHAAAISSGRW-------SPDGAGLLTAGEDGVIKIWSR 133 (737)
T ss_pred ceEEEEcCCceEEEeccc---------------chhhhhhhhhhhhhhhccc-------CCCCceeeeecCCceEEEEec
Confidence 578888999999998765 3455678899999999999 999999999999999999984
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
+|-...++... ..+|+|++|. |+.+.++-+. .+.+.+= .+.... .+-.+++|.+-
T Consensus 134 -sGMLRStl~Q~--------------~~~v~c~~W~-----p~S~~vl~c~-g~h~~IK--pL~~n~--k~i~WkAHDGi 188 (737)
T KOG1524|consen 134 -SGMLRSTVVQN--------------EESIRCARWA-----PNSNSIVFCQ-GGHISIK--PLAANS--KIIRWRAHDGL 188 (737)
T ss_pred -cchHHHHHhhc--------------CceeEEEEEC-----CCCCceEEec-CCeEEEe--eccccc--ceeEEeccCcE
Confidence 34332222222 2389999999 7765554443 3445553 222222 45568899999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCcee----------eeecCCCCCCcccc-ccC---CCcceeeeEEEEcCCC
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS----------QVSIPTNTPGLQSC-TDL---PDAFVSCLGMAVSPGN 310 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~----------~~~~~~~~~~~~~~-~~~---~~h~~~v~~v~~sp~~ 310 (318)
|.++.|++....+++|++|-..++||..+..+. .+.+.++..++.++ ..+ ....+.|..++||+||
T Consensus 189 iL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 189 VLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADG 268 (737)
T ss_pred EEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCC
Confidence 999999999999999999999999998764442 34455554444422 222 2455788899999999
Q ss_pred cEEEEE
Q 021036 311 LVVAMV 316 (318)
Q Consensus 311 ~~l~~~ 316 (318)
..+++|
T Consensus 269 TQ~a~g 274 (737)
T KOG1524|consen 269 TQATCG 274 (737)
T ss_pred ceeecc
Confidence 988876
No 174
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.5e-15 Score=120.69 Aligned_cols=198 Identities=12% Similarity=0.121 Sum_probs=142.3
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++++-..++++++|..+++.+..+... ...... +.+.... .+..+.+|+.||.|+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~----~~~~N~---vrf~~~d----------------s~h~v~s~ssDG~Vr 97 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGP----PATTNG---VRFISCD----------------SPHGVISCSSDGTVR 97 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCC----CCcccc---eEEecCC----------------CCCeeEEeccCCeEE
Confidence 45788899999999999999888887652 222111 3333321 247899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEe----CCCcEEEEECCCcce-ee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGS----SDGSVRIWDGYIQEL-QK 171 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~----~d~~v~iwd~~~~~~-~~ 171 (318)
+||++... ......+..+. .+..|++- .-+++.+++|. .|..|.+||++..+. +.
T Consensus 98 ~wD~Rs~~------------e~a~~~~~~~~~~~f~~ld~-------nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~ 158 (376)
T KOG1188|consen 98 LWDIRSQA------------ESARISWTQQSGTPFICLDL-------NCKKNIIACGTELTRSDASVVLWDVRSEQQLLR 158 (376)
T ss_pred EEEeecch------------hhhheeccCCCCCcceEeec-------cCcCCeEEeccccccCceEEEEEEeccccchhh
Confidence 99999754 22334455555 45566666 55667788775 467899999997654 32
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
. +...|...|++++|+ |.+.++|++|+.||.|.+||+......- .+...-.|...|..+.|.
T Consensus 159 ~-------------~~eSH~DDVT~lrFH----P~~pnlLlSGSvDGLvnlfD~~~d~EeD-aL~~viN~~sSI~~igw~ 220 (376)
T KOG1188|consen 159 Q-------------LNESHNDDVTQLRFH----PSDPNLLLSGSVDGLVNLFDTKKDNEED-ALLHVINHGSSIHLIGWL 220 (376)
T ss_pred h-------------hhhhccCcceeEEec----CCCCCeEEeecccceEEeeecCCCcchh-hHHHhhcccceeeeeeee
Confidence 2 224566699999999 5778999999999999999764443322 233333477889999999
Q ss_pred CCC-CEEEEecCCCcEEEEEecCCc
Q 021036 252 FDG-CCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 252 ~~~-~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.++ +.|.+-+...+..+|++..+.
T Consensus 221 ~~~ykrI~clTH~Etf~~~ele~~~ 245 (376)
T KOG1188|consen 221 SKKYKRIMCLTHMETFAIYELEDGS 245 (376)
T ss_pred cCCcceEEEEEccCceeEEEccCCC
Confidence 876 468888899999999997644
No 175
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.69 E-value=1.1e-15 Score=128.13 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=149.2
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...++.|-..|.+.+.|....+....+.......+ ..++|++|-|.. ..++++.-.+|.+
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~k---tsvT~ikWvpg~-----------------~~~Fl~a~~sGnl 244 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINK---SSVTCIKWVPGS-----------------DSLFLVAHASGNL 244 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccc---cceEEEEEEeCC-----------------CceEEEEEecCce
Confidence 35567777778888777665333333333222233 347789999877 5777888899999
Q ss_pred EEEEccCCcc-----cc---------ccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 97 SLWRICVPKC-----YS---------VEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 97 ~iw~~~~~~~-----~~---------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++|.+-... .+ +.......+..++..+.--.+.|+..+| +++|++|++.+.||.+||+
T Consensus 245 yly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F-------S~DG~~LA~VSqDGfLRvF 317 (636)
T KOG2394|consen 245 YLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF-------SPDGKYLATVSQDGFLRIF 317 (636)
T ss_pred EEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE-------cCCCceEEEEecCceEEEe
Confidence 9997742110 00 0001111111233334334568899999 8999999999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
|..+.+++..++..- +...|++|+ |||+++++|+.|.-|.|| .+...+ .+..-++|.
T Consensus 318 ~fdt~eLlg~mkSYF--------------GGLLCvcWS-----PDGKyIvtGGEDDLVtVw--Sf~erR--VVARGqGHk 374 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYF--------------GGLLCVCWS-----PDGKYIVTGGEDDLVTVW--SFEERR--VVARGQGHK 374 (636)
T ss_pred eccHHHHHHHHHhhc--------------cceEEEEEc-----CCccEEEecCCcceEEEE--Eeccce--EEEeccccc
Confidence 999887766554432 378899999 999999999999999999 555555 788889999
Q ss_pred CceeEEEEcCC-----------------------------------C-------------CEEEEecCCCcEEEEEecCC
Q 021036 243 QVVTGLAWAFD-----------------------------------G-------------CCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 243 ~~v~~~~~~~~-----------------------------------~-------------~~l~s~~~d~~v~iwd~~~~ 274 (318)
.+|..|+|+|- + -.|.+.+.|-.+.+||+...
T Consensus 375 SWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD 454 (636)
T KOG2394|consen 375 SWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTED 454 (636)
T ss_pred cceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchh
Confidence 99999999830 1 14678899999999999765
Q ss_pred cee
Q 021036 275 SLS 277 (318)
Q Consensus 275 ~~~ 277 (318)
.+.
T Consensus 455 ~L~ 457 (636)
T KOG2394|consen 455 VLV 457 (636)
T ss_pred hcc
Confidence 544
No 176
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=1.4e-14 Score=116.10 Aligned_cols=240 Identities=19% Similarity=0.195 Sum_probs=147.8
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
++.+..|..||++|-.. ++...+.- ...-.+.|++|.|.+ +.-|+.|+..| |.||
T Consensus 113 fava~nddvVriy~kss-t~pt~Lks------~sQrnvtclawRPls-----------------aselavgCr~g-IciW 167 (445)
T KOG2139|consen 113 FAVATNDDVVRIYDKSS-TCPTKLKS------VSQRNVTCLAWRPLS-----------------ASELAVGCRAG-ICIW 167 (445)
T ss_pred hhhhccCcEEEEeccCC-CCCceecc------hhhcceeEEEeccCC-----------------cceeeeeecce-eEEE
Confidence 57788999999997765 44333321 112237789999998 67888888766 8999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
.....-........-......+-...+| .+|+++.| .++|..+++++. |..|.|||..++.........
T Consensus 168 ~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqw-------n~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g-- 237 (445)
T KOG2139|consen 168 SDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQW-------NEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG-- 237 (445)
T ss_pred EcCcccccccccccccccchhheeCCCC-ceeeEEEE-------cCCCCEEeecccCcceEEEEcCCCCCcccccccC--
Confidence 8864221100000000001112223455 68999999 899999999885 689999999998766543211
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.+.++-+.|+ ||+.+|+.+..|+..++|+ ...... ... ..-..+.|...+|+|+|++|+
T Consensus 238 ------------lgg~slLkwS-----Pdgd~lfaAt~davfrlw~--e~q~wt-~er-w~lgsgrvqtacWspcGsfLL 296 (445)
T KOG2139|consen 238 ------------LGGFSLLKWS-----PDGDVLFAATCDAVFRLWQ--ENQSWT-KER-WILGSGRVQTACWSPCGSFLL 296 (445)
T ss_pred ------------CCceeeEEEc-----CCCCEEEEecccceeeeeh--hcccce-ecc-eeccCCceeeeeecCCCCEEE
Confidence 2378889999 9999999999999999994 222211 111 122345899999999999765
Q ss_pred EecCCCcEEEEEecCCce-eeeecCCCCC---Ccc------ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 259 SCSQDNFVRSWIFHGNSL-SQVSIPTNTP---GLQ------SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~-~~~~~~~~~~---~~~------~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.... |.=++|.+..... .......... .++ ......-..+...+++|.|.|.+||+.
T Consensus 297 f~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~ 363 (445)
T KOG2139|consen 297 FACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVI 363 (445)
T ss_pred EEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEE
Confidence 4433 3334666542111 1111000000 000 000111234678899999999999974
No 177
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.68 E-value=4.6e-17 Score=142.73 Aligned_cols=188 Identities=14% Similarity=0.163 Sum_probs=141.5
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|..+|.|..++..|.++++|+.|..++||..++.. .+....||.+.|+.++. +.+.
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~--------------~lAs~rGhs~ditdlav-------s~~n 244 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR--------------CLASCRGHSGDITDLAV-------SSNN 244 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchh--------------hhccCCCCccccchhcc-------chhh
Confidence 77899999999999999999999999999999998855 45788999999999999 7888
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD- 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~- 226 (318)
..+++++.|..|++|.+..+..+..+.+|+. .|++++|+ |-. +.+.||++++||++
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg--------------avtaiafs-----P~~----sss~dgt~~~wd~r~ 301 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVSVLRGHTG--------------AVTAIAFS-----PRA----SSSDDGTCRIWDARL 301 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHHHHhcccc--------------ceeeeccC-----ccc----cCCCCCceEeccccc
Confidence 8999999999999999999988887776664 56666665 321 33445555555422
Q ss_pred --------------------------------------------------------------------------------
Q 021036 227 -------------------------------------------------------------------------------- 226 (318)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (318)
T Consensus 302 ~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwn 381 (1113)
T KOG0644|consen 302 EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWN 381 (1113)
T ss_pred cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeee
Confidence
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
+.++. ..+.+.+|...++.+.++|... ...+++.||...|||+..+...+....+ | ..+..-+
T Consensus 382 l~~g~--l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-------------h-~kl~d~k 445 (1113)
T KOG0644|consen 382 LYTGQ--LLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-------------H-GKLVDGK 445 (1113)
T ss_pred cccch--hhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-------------c-ceeeccc
Confidence 11111 1222346777888899999655 5568999999999999877655544322 2 2455668
Q ss_pred EcCCCcEEEE
Q 021036 306 VSPGNLVVAM 315 (318)
Q Consensus 306 ~sp~~~~l~~ 315 (318)
||+||+.++.
T Consensus 446 FSqdgts~~l 455 (1113)
T KOG0644|consen 446 FSQDGTSIAL 455 (1113)
T ss_pred cCCCCceEec
Confidence 8888877664
No 178
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.1e-16 Score=124.38 Aligned_cols=174 Identities=15% Similarity=0.040 Sum_probs=133.3
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+.+|++.|..+.||.++++|++|+.|..+++|+++.--. ....+++.... .|...|.|++| ...
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~--------~k~~KPI~~~~~~H~SNIF~L~F-------~~~ 116 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV--------RKTPKPIGVMEHPHRSNIFSLEF-------DLE 116 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHh--------hcCCCCceeccCccccceEEEEE-------ccC
Confidence 668999999999999999999999999999999974210 00123444333 35689999999 788
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
..++++|..+++|.+.|+++.+.+..+.... ..+.|+.+..+ |..+.|++.+.++.|.+||..
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~------------~~~~VY~m~~~-----P~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVANENN------------NRGDVYHMDQH-----PTDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeecccC------------cccceeecccC-----CCCceEEEEecCceEEEEecc
Confidence 8999999999999999999887776654322 24578999998 889999999999999999644
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~ 274 (318)
-+.....++ -+.......+.+.|+|. ..+|++.+..+-+.+||.+..
T Consensus 180 d~~~~~~~~-~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~ 227 (609)
T KOG4227|consen 180 DRQNPISLV-LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQ 227 (609)
T ss_pred CCCCCCcee-eecCCCccceeeeecCCCceeEEeccccCCCCceeeccc
Confidence 333222222 22334556788999996 458889999999999999753
No 179
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.67 E-value=4.9e-16 Score=119.34 Aligned_cols=157 Identities=15% Similarity=0.207 Sum_probs=115.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
-++++|..+|.|.+||+.++... .+.+...+.......|..+|.++.| .+.-..=++|+.+..+..|++
T Consensus 166 ~lllaGyEsghvv~wd~S~~~~~----~~~~~~~kv~~~~ash~qpvlsldy-------as~~~rGisgga~dkl~~~Sl 234 (323)
T KOG0322|consen 166 FLLLAGYESGHVVIWDLSTGDKI----IQLPQSSKVESPNASHKQPVLSLDY-------ASSCDRGISGGADDKLVMYSL 234 (323)
T ss_pred EEEEEeccCCeEEEEEccCCcee----eccccccccccchhhccCcceeeee-------chhhcCCcCCCccccceeeee
Confidence 36778899999999999986321 0111112333445679999999999 333333477788888999988
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
........+. .........+..+.+. ||++.+|++++|+.|++|.+ ++.. ++..++.|.+.
T Consensus 235 ~~s~gslq~~----------~e~~lknpGv~gvrIR-----pD~KIlATAGWD~RiRVysw--rtl~--pLAVLkyHsag 295 (323)
T KOG0322|consen 235 NHSTGSLQIR----------KEITLKNPGVSGVRIR-----PDGKILATAGWDHRIRVYSW--RTLN--PLAVLKYHSAG 295 (323)
T ss_pred ccccCccccc----------ceEEecCCCccceEEc-----cCCcEEeecccCCcEEEEEe--ccCC--chhhhhhhhcc
Confidence 7431111111 0011223367888888 99999999999999999954 4555 78889999999
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|.+++|+|+...+|.++.|+.|.+|++
T Consensus 296 vn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 296 VNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred eeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999999999999986
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.67 E-value=3e-15 Score=116.49 Aligned_cols=205 Identities=17% Similarity=0.181 Sum_probs=136.6
Q ss_pred CCCCcccccccCCCCC-ccEEEEecCC-------CcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeee
Q 021036 68 LSSKKYPVPQNGSSNW-FSILAVGGRS-------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAV 138 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~-~~~l~~g~~d-------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p 138 (318)
+..|.++|..++.+|- ..+|+++..+ ..+-||.+...... ....+.+.+..+. .+-+.|.|+.|
T Consensus 59 f~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~-----S~~~tlE~v~~Ldteavg~i~cvew-- 131 (370)
T KOG1007|consen 59 FFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ-----SNSSTLECVASLDTEAVGKINCVEW-- 131 (370)
T ss_pred hhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc-----cccchhhHhhcCCHHHhCceeeEEE--
Confidence 3345566777777774 4566665432 23679998753210 0011122333443 45569999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCC-CCceEEEEEeC
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS-PRLMLLAVGKG 216 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~-~~~~~l~~~~~ 216 (318)
.|++..+++-. |..|.+|++..+.. ...+..... ..+....++-+|+ | .+++.+++.+
T Consensus 132 -----~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s---------~e~~~~ftsg~Ws----pHHdgnqv~tt~- 191 (370)
T KOG1007|consen 132 -----EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSES---------AEMRHSFTSGAWS----PHHDGNQVATTS- 191 (370)
T ss_pred -----cCCCCeeEEec-cCceEEEEcccCcchheeeccccc---------ccccceecccccC----CCCccceEEEeC-
Confidence 78888888776 88999999997765 333332221 1234456677787 2 3688888876
Q ss_pred CCcEEEeeeccCCCeeeEeee-eecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccC
Q 021036 217 SGSFDLWKCDISCNKFDKVGS-YNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
|+++..| |.++.+ .... -.+|...|..+.|+|+- .+|++|+.||.|+|||.+..+..- ..+
T Consensus 192 d~tl~~~--D~RT~~--~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv-------------~el 254 (370)
T KOG1007|consen 192 DSTLQFW--DLRTMK--KNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPV-------------QEL 254 (370)
T ss_pred CCcEEEE--Eccchh--hhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccc-------------ccc
Confidence 9999999 555544 2223 34688999999999984 489999999999999998744332 245
Q ss_pred CCcceeeeEEEEcC-CCcEEEEE
Q 021036 295 PDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 295 ~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
.+|+-.|++|.|+| ..++|++|
T Consensus 255 ~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 255 PGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred CCCceEEEEEEecCccceEEEec
Confidence 56888999999999 34556555
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.66 E-value=8.4e-15 Score=115.53 Aligned_cols=206 Identities=14% Similarity=0.086 Sum_probs=146.2
Q ss_pred CCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 14 DSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 14 ~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
..+...++.+-+...+.|+.....+.-..... -..|... ++++.|+|.. +.|++|+.|
T Consensus 19 n~drt~iAv~~~~~evhiy~~~~~~~w~~~ht-ls~Hd~~---vtgvdWap~s------------------nrIvtcs~d 76 (361)
T KOG1523|consen 19 NSDRTQIAVSPNNHEVHIYSMLGADLWEPAHT-LSEHDKI---VTGVDWAPKS------------------NRIVTCSHD 76 (361)
T ss_pred cCCCceEEeccCCceEEEEEecCCCCceecee-hhhhCcc---eeEEeecCCC------------------CceeEccCC
Confidence 35556677777888888887766552222211 0012222 4447777766 999999999
Q ss_pred CcEEEEEc-cCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 94 GKVSLWRI-CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
..-++|.. ..++ .++.-.+..+...++++.| +|.++.|++|+....|.+|-++....-..
T Consensus 77 rnayVw~~~~~~~------------WkptlvLlRiNrAAt~V~W-------sP~enkFAVgSgar~isVcy~E~ENdWWV 137 (361)
T KOG1523|consen 77 RNAYVWTQPSGGT------------WKPTLVLLRINRAATCVKW-------SPKENKFAVGSGARLISVCYYEQENDWWV 137 (361)
T ss_pred CCccccccCCCCe------------eccceeEEEeccceeeEee-------cCcCceEEeccCccEEEEEEEecccceeh
Confidence 99999999 4444 3344556678889999999 89999999999999999998775433221
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC-----------e---eeEeeee
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN-----------K---FDKVGSY 238 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~-----------~---~~~~~~~ 238 (318)
.+++.......|.++.|+ |++-+|++|+.|++.++|..-++.- + -+.+.++
T Consensus 138 ----------sKhikkPirStv~sldWh-----pnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~ 202 (361)
T KOG1523|consen 138 ----------SKHIKKPIRSTVTSLDWH-----PNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEA 202 (361)
T ss_pred ----------hhhhCCccccceeeeecc-----CCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhh
Confidence 112223345589999999 9999999999999999996311110 0 0122233
Q ss_pred ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 239 NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 239 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
....+.+..+.|+|+|..|+-.+.|.++.+-|.....
T Consensus 203 ~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 203 SSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred ccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 3456789999999999999999999999999987653
No 182
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=7.1e-16 Score=139.63 Aligned_cols=201 Identities=15% Similarity=0.203 Sum_probs=147.6
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
++.....+.+++|+.||.|.|||+..-+.- ++... ......+.+++||... ..+|+++
T Consensus 123 DfN~~q~nlLASGa~~geI~iWDlnn~~tP--~~~~~---~~~~~eI~~lsWNrkv-----------------qhILAS~ 180 (1049)
T KOG0307|consen 123 DFNPFQGNLLASGADDGEILIWDLNKPETP--FTPGS---QAPPSEIKCLSWNRKV-----------------SHILASG 180 (1049)
T ss_pred eccccCCceeeccCCCCcEEEeccCCcCCC--CCCCC---CCCcccceEeccchhh-----------------hHHhhcc
Confidence 344455667899999999999999874322 22111 1122346779999877 5789999
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeecccc--ccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECC
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN--SWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGY 165 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~ 165 (318)
+.+|.+.|||++..+ ++-.+..+. ..+..+.|+| .+...|++++.| -.|.+||+|
T Consensus 181 s~sg~~~iWDlr~~~--------------pii~ls~~~~~~~~S~l~WhP------~~aTql~~As~dd~~PviqlWDlR 240 (1049)
T KOG0307|consen 181 SPSGRAVIWDLRKKK--------------PIIKLSDTPGRMHCSVLAWHP------DHATQLLVASGDDSAPVIQLWDLR 240 (1049)
T ss_pred CCCCCceeccccCCC--------------cccccccCCCccceeeeeeCC------CCceeeeeecCCCCCceeEeeccc
Confidence 999999999999753 333444433 3578999933 233456666654 379999998
Q ss_pred Cc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 166 IQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 166 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
.- ..++.+.. |...|.++.|+ +.|..++++++.|+.|.+| +..+++ .+.++......
T Consensus 241 ~assP~k~~~~--------------H~~GilslsWc----~~D~~lllSsgkD~~ii~w--N~~tgE--vl~~~p~~~nW 298 (1049)
T KOG0307|consen 241 FASSPLKILEG--------------HQRGILSLSWC----PQDPRLLLSSGKDNRIICW--NPNTGE--VLGELPAQGNW 298 (1049)
T ss_pred ccCCchhhhcc--------------cccceeeeccC----CCCchhhhcccCCCCeeEe--cCCCce--EeeecCCCCcc
Confidence 54 34444444 44589999999 3556999999999999999 677776 67788777889
Q ss_pred eeEEEEcCCCC-EEEEecCCCcEEEEEecCCc
Q 021036 245 VTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 245 v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~ 275 (318)
+..+.|.|... .|+.++-||.|.||.+.+..
T Consensus 299 ~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 299 CFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999755 88999999999999997644
No 183
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.66 E-value=1.2e-14 Score=127.54 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=162.7
Q ss_pred ccCcCCCCCccceEEeeCCCceeEeecCCCCC--CCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc
Q 021036 8 TSNKMKDSNTHPTVAASKSKGNSITKIPSNCC--LPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS 85 (318)
Q Consensus 8 ~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~ 85 (318)
+..++-+.+.+.++.|..+|.|.+||+..+.. ...++.....|++.+.. +.|.... .+.
T Consensus 246 ~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~---vvW~~~~----------------~~~ 306 (555)
T KOG1587|consen 246 TCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTA---VVWLQNE----------------HNT 306 (555)
T ss_pred eEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEE---EEEeccC----------------CCC
Confidence 34566777888899999999999999998776 44555555556666444 7786644 114
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec------cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ------AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
-+++++.||.|..|+++.-.... ...+..... .....+++++|.| .+...|+.|+.+|.|
T Consensus 307 ~f~s~ssDG~i~~W~~~~l~~P~--------e~~~~~~~~~~~~~~~~~~~~t~~~F~~------~~p~~FiVGTe~G~v 372 (555)
T KOG1587|consen 307 EFFSLSSDGSICSWDTDMLSLPV--------EGLLLESKKHKGQQSSKAVGATSLKFEP------TDPNHFIVGTEEGKV 372 (555)
T ss_pred ceEEEecCCcEeeeeccccccch--------hhcccccccccccccccccceeeEeecc------CCCceEEEEcCCcEE
Confidence 57888889999999876422100 000000111 1234678999933 344569999999998
Q ss_pred EEEECCCccee--eeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 160 RIWDGYIQELQ--KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 160 ~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.--+-...+.. ..++++ .....|.++|+.+.++ |=+ +.|++++ |.++++|.-+... .++.
T Consensus 373 ~~~~r~g~~~~~~~~~~~~--------~~~~~h~g~v~~v~~n-----PF~~k~fls~g-DW~vriWs~~~~~---~Pl~ 435 (555)
T KOG1587|consen 373 YKGCRKGYTPAPEVSYKGH--------STFITHIGPVYAVSRN-----PFYPKNFLSVG-DWTVRIWSEDVIA---SPLL 435 (555)
T ss_pred EEEeccCCccccccccccc--------ccccccCcceEeeecC-----CCccceeeeec-cceeEeccccCCC---Ccch
Confidence 87332222111 111222 1224577799999998 544 4555555 9999999533222 2677
Q ss_pred eeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 237 SYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+..+...+++++|||-. ..|+++..||.|.+||+............. +....+.+.|+++|+.|++
T Consensus 436 ~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~------------~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKV------------CSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred hhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccc------------cccccceeecCCCCcEEEE
Confidence 777788889999999974 488899999999999997644332221111 1236678899999999999
Q ss_pred Ee
Q 021036 316 VQ 317 (318)
Q Consensus 316 ~~ 317 (318)
|.
T Consensus 504 Gd 505 (555)
T KOG1587|consen 504 GD 505 (555)
T ss_pred ec
Confidence 85
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.65 E-value=1.8e-14 Score=116.47 Aligned_cols=202 Identities=19% Similarity=0.199 Sum_probs=139.0
Q ss_pred ceEEeeCCCceeEeecCCCCCC--CceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC--C
Q 021036 19 PTVAASKSKGNSITKIPSNCCL--PLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS--G 94 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d--g 94 (318)
.++++-.+|.+.+|....+..- +.+.... . ..+. .+.-.|.. ..++|+|+.. .
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~--g-~g~~---~~r~~~~~-----------------p~Iva~GGke~~n 173 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT--G-PGLY---DVRQTDTD-----------------PYIVATGGKENIN 173 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec--C-Ccee---eeccCCCC-----------------CceEecCchhccc
Confidence 3688899999999988754311 1111100 0 0000 12222222 4788889999 8
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCC--CcEEEEEeCCCcEEEEECCCc-ceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNP--QVLLVTGSSDGSVRIWDGYIQ-ELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~-~~~~ 171 (318)
.++|||++..+. +.......+-.+- + .-.-.++++.| -+. ...|++++.-+.|++||.+.+ +++.
T Consensus 174 ~lkiwdle~~~q--iw~aKNvpnD~L~--L-rVPvW~tdi~F-------l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 174 ELKIWDLEQSKQ--IWSAKNVPNDRLG--L-RVPVWITDIRF-------LEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceeeeeccccee--eeeccCCCCcccc--c-eeeeeecccee-------cCCCCCceEEEEecceeEEEecCcccCccee
Confidence 899999987531 1111110000000 0 01124678888 444 678999999999999999965 4555
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+...+. +++++... |+++.+++|..-|.+..| |.++++. ....+++..+.|+++..+
T Consensus 242 ~fd~~E~--------------~is~~~l~-----p~gn~Iy~gn~~g~l~~F--D~r~~kl-~g~~~kg~tGsirsih~h 299 (412)
T KOG3881|consen 242 QFDFLEN--------------PISSTGLT-----PSGNFIYTGNTKGQLAKF--DLRGGKL-LGCGLKGITGSIRSIHCH 299 (412)
T ss_pred EeccccC--------------cceeeeec-----CCCcEEEEecccchhhee--cccCcee-eccccCCccCCcceEEEc
Confidence 5554443 88999998 999999999999999999 7777763 344488889999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecCCcee
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
|.++++++++.|+.|||+|+.++++.
T Consensus 300 p~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 300 PTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred CCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999986654
No 185
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=3e-14 Score=128.35 Aligned_cols=237 Identities=15% Similarity=0.136 Sum_probs=153.1
Q ss_pred CCccceEEeeC-CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 15 SNTHPTVAASK-SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 15 ~~~~~~~t~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
....+.+.++. ...|++||.+.++++..+....+... .++.+.+-... +-.++++|+.|
T Consensus 1073 hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t----~Vs~l~liNe~----------------D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1073 HPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDT----RVSDLELINEQ----------------DDALLLTASSD 1132 (1387)
T ss_pred cCCCceeEEcCCcceEEEEecccCceeccccCCCCCCC----ccceeeeeccc----------------chhheeeeccC
Confidence 34444444444 67889999999998776654332111 11212221111 13799999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
|.||||+--..... ..+.+..+.+- .+.=.-+.| .....+|++++.-..|+|||...
T Consensus 1133 GvIRIwk~y~~~~~---------~~eLVTaw~~Ls~~~~~~r~~~~v~dW-------qQ~~G~Ll~tGd~r~IRIWDa~~ 1196 (1387)
T KOG1517|consen 1133 GVIRIWKDYADKWK---------KPELVTAWSSLSDQLPGARGTGLVVDW-------QQQSGHLLVTGDVRSIRIWDAHK 1196 (1387)
T ss_pred ceEEEecccccccC---------CceeEEeeccccccCccCCCCCeeeeh-------hhhCCeEEecCCeeEEEEEeccc
Confidence 99999976432100 02333333221 111134677 44445666666678999999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc--
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV-- 244 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~-- 244 (318)
.++...+.... ...++++.-+ ...|+.++.|..||.|++||..+...+ ..+...+.|...
T Consensus 1197 E~~~~diP~~s-------------~t~vTaLS~~----~~~gn~i~AGfaDGsvRvyD~R~a~~d-s~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1197 EQVVADIPYGS-------------STLVTALSAD----LVHGNIIAAGFADGSVRVYDRRMAPPD-SLVCVYREHNDVEP 1258 (1387)
T ss_pred ceeEeecccCC-------------Cccceeeccc----ccCCceEEEeecCCceEEeecccCCcc-ccceeecccCCccc
Confidence 88777665433 2356666665 256899999999999999965444333 256677888877
Q ss_pred eeEEEEcCCCC-EEEEecCCCcEEEEEecCCceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 245 VTGLAWAFDGC-CLYSCSQDNFVRSWIFHGNSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 245 v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|..+.+.+.|- .|++|+.||.|++||++...... +..+.. ..+.++++..+++...+|+|.
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~------------yGs~lTal~VH~hapiiAsGs 1323 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE------------YGSALTALTVHEHAPIIASGS 1323 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc------------cCccceeeeeccCCCeeeecC
Confidence 99999998765 49999999999999999742221 111111 112578999999999999885
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=4.2e-14 Score=124.09 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=128.2
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC---CcEEEEEcc
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS---GKVSLWRIC 102 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d---g~i~iw~~~ 102 (318)
+..+.+||..... .+.+.. +... +....|+|++ +.|+..+.+ ..|++||+.
T Consensus 183 ~~~i~i~d~dg~~-~~~lt~----~~~~---v~~p~wSPDG------------------~~la~~s~~~~~~~i~i~dl~ 236 (429)
T PRK01742 183 PYEVRVADYDGFN-QFIVNR----SSQP---LMSPAWSPDG------------------SKLAYVSFENKKSQLVVHDLR 236 (429)
T ss_pred eEEEEEECCCCCC-ceEecc----CCCc---cccceEcCCC------------------CEEEEEEecCCCcEEEEEeCC
Confidence 4688888886543 222221 2222 2337788877 777776543 369999998
Q ss_pred CCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEE--ECCCcceeeeecccccc
Q 021036 103 VPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIW--DGYIQELQKSAEAHCVP 179 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iw--d~~~~~~~~~~~~~~~~ 179 (318)
+++ .+.+..+.+| ...++| +|+|+.|+.++ .+|.+.|| |+.+++.. .+..
T Consensus 237 tg~------------~~~l~~~~g~---~~~~~w-------SPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~---- 289 (429)
T PRK01742 237 SGA------------RKVVASFRGH---NGAPAF-------SPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTS---- 289 (429)
T ss_pred CCc------------eEEEecCCCc---cCceeE-------CCCCCEEEEEEecCCcEEEEEEECCCCCeE-eecc----
Confidence 765 2334444444 346899 89999888765 67876655 55554432 2221
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
+...+....|+ |+|+.|+.++ .+|...+|+++...+.... + .+.. ....|+|+|++|+
T Consensus 290 ----------~~~~~~~~~wS-----pDG~~i~f~s~~~g~~~I~~~~~~~~~~~~---l-~~~~--~~~~~SpDG~~ia 348 (429)
T PRK01742 290 ----------GAGNNTEPSWS-----PDGQSILFTSDRSGSPQVYRMSASGGGASL---V-GGRG--YSAQISADGKTLV 348 (429)
T ss_pred ----------CCCCcCCEEEC-----CCCCEEEEEECCCCCceEEEEECCCCCeEE---e-cCCC--CCccCCCCCCEEE
Confidence 22356678898 9998766554 6788999987765554222 2 2333 4578999999998
Q ss_pred EecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 259 SCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+.++ +.+||+.++....+.... ...+++|+|||++|+.+.
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~lt~~~----------------~~~~~~~sPdG~~i~~~s 390 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEVLSSTF----------------LDESPSISPNGIMIIYSS 390 (429)
T ss_pred EEcCCC-EEEEECCCCCeEEecCCC----------------CCCCceECCCCCEEEEEE
Confidence 887765 556999887654332111 124678999999988753
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=7.8e-14 Score=120.19 Aligned_cols=227 Identities=15% Similarity=0.122 Sum_probs=154.4
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVP 104 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 104 (318)
.+..+.++|.+.|..++++.. |++. +.|++|+.++ +.+|+|+.|..|.+|+-+-.
T Consensus 31 Ag~rlliyD~ndG~llqtLKg----HKDt---VycVAys~dG------------------krFASG~aDK~VI~W~~klE 85 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLKG----HKDT---VYCVAYAKDG------------------KRFASGSADKSVIIWTSKLE 85 (1081)
T ss_pred cCCEEEEEeCCCccccccccc----ccce---EEEEEEccCC------------------ceeccCCCceeEEEeccccc
Confidence 344688999999988887765 6666 5558888887 99999999999999987643
Q ss_pred ccccccccc------------------------cCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 105 KCYSVEDCK------------------------VPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 105 ~~~~~~~~~------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
..+...++. +++..+.+... .....|.+.+| ..+|++|+.|-.||+|.
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~-kss~R~~~CsW-------tnDGqylalG~~nGTIs 157 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKH-KSSSRIICCSW-------TNDGQYLALGMFNGTIS 157 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhh-hhheeEEEeee-------cCCCcEEEEeccCceEE
Confidence 333222211 01111111111 12356788888 88999999999999999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
+-+-...... .+... .+...+|.+++|++...+...+.+++..+..++.+|.++ . + .+..-+.
T Consensus 158 iRNk~gEek~-~I~Rp-----------gg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls--G-~--~Igk~r~ 220 (1081)
T KOG1538|consen 158 IRNKNGEEKV-KIERP-----------GGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS--G-K--QIGKDRA 220 (1081)
T ss_pred eecCCCCcce-EEeCC-----------CCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec--c-e--eeccccc
Confidence 9865433322 22211 123558999999954443345689999999999998442 2 2 3332333
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-.-...|+.+.++|.+++.|+.|+.+.+|...+-.+-++.- ....|+.|+..|++++++.|
T Consensus 221 L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLGTvg~---------------~D~WIWtV~~~PNsQ~v~~G 281 (1081)
T KOG1538|consen 221 LNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLGTVGE---------------QDSWIWTVQAKPNSQYVVVG 281 (1081)
T ss_pred CCCCchhheeccCCcEEEEccCCCceEEEeecCeEEeeccc---------------cceeEEEEEEccCCceEEEE
Confidence 34456789999999999999999999999765433333221 12489999999999998876
No 188
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.64 E-value=1.4e-14 Score=121.73 Aligned_cols=170 Identities=15% Similarity=0.080 Sum_probs=119.0
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
|.+++.+-.++++|.-|++.+.||.|+||.... -+..++.....+|+|++| .|+.+.+
T Consensus 103 H~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG---------------MLRStl~Q~~~~v~c~~W-------~p~S~~v 160 (737)
T KOG1524|consen 103 HAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG---------------MLRSTVVQNEESIRCARW-------APNSNSI 160 (737)
T ss_pred hhhhhhhcccCCCCceeeeecCCceEEEEeccc---------------hHHHHHhhcCceeEEEEE-------CCCCCce
Confidence 334444444444449999999999999999763 222344455679999999 5555555
Q ss_pred EEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 151 VTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
+-+-. +.+.|=.+.....+-.. .+|++-|-++.|+ +..+++++|+.|-..++| |....
T Consensus 161 l~c~g-~h~~IKpL~~n~k~i~W--------------kAHDGiiL~~~W~-----~~s~lI~sgGED~kfKvW--D~~G~ 218 (737)
T KOG1524|consen 161 VFCQG-GHISIKPLAANSKIIRW--------------RAHDGLVLSLSWS-----TQSNIIASGGEDFRFKIW--DAQGA 218 (737)
T ss_pred EEecC-CeEEEeecccccceeEE--------------eccCcEEEEeecC-----ccccceeecCCceeEEee--cccCc
Confidence 54432 34444444322222222 4567789999999 999999999999999999 44433
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCcc
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQ 289 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~ 289 (318)
.+..-..|+.+|++++|.|+ +.++.++. .++|+=..+.+....+.+.+++..++
T Consensus 219 ---~Lf~S~~~ey~ITSva~npd-~~~~v~S~-nt~R~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 219 ---NLFTSAAEEYAITSVAFNPE-KDYLLWSY-NTARFSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred ---ccccCChhccceeeeeeccc-cceeeeee-eeeeecCCCccceEEEEEcCCCceee
Confidence 45566779999999999999 66666664 47776667778888888888876554
No 189
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=2.8e-15 Score=127.21 Aligned_cols=203 Identities=15% Similarity=0.083 Sum_probs=150.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccc----------------------------------c-
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVED----------------------------------C- 112 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~----------------------------------~- 112 (318)
..+|.+-|.++.+++.|.+|++|+.||+|+||.+.++.|+.... +
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~ 475 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGD 475 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccc
Confidence 55899999999999999999999999999999999998753210 0
Q ss_pred -------------cc---CC--------------ceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcE
Q 021036 113 -------------KV---PT--------------TAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSV 159 (318)
Q Consensus 113 -------------~~---~~--------------~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v 159 (318)
.+ .. ...-++....|...|.++.| ...|+||++...+ ..|
T Consensus 476 ~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW-------HrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 476 RLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW-------HRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred hhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee-------ecCCceEEEeccCCCcceE
Confidence 00 00 00112233457889999999 8999999998764 478
Q ss_pred EEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
.|+++........|.. ..+.+.++.|+ |...+|++++ ...|++|| +..+. .+..+.
T Consensus 549 liHQLSK~~sQ~PF~k--------------skG~vq~v~FH-----Ps~p~lfVaT-q~~vRiYd--L~kqe--lvKkL~ 604 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFRK--------------SKGLVQRVKFH-----PSKPYLFVAT-QRSVRIYD--LSKQE--LVKKLL 604 (733)
T ss_pred EEEecccccccCchhh--------------cCCceeEEEec-----CCCceEEEEe-ccceEEEe--hhHHH--HHHHHh
Confidence 8888876554433321 23468889999 8888888877 56799995 44444 555666
Q ss_pred cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC--ceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 240 AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN--SLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 240 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.....|..++.+|.|.-|+.|+.|+.+..||+.-. .... ++-|...+++|+|++.-.++|+|
T Consensus 605 tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~---------------lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 605 TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKT---------------LRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHH---------------hhhhhhhhhhhhhccccceeeee
Confidence 66678999999999999999999999999998643 2222 33355688899998888888776
No 190
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=8.7e-15 Score=112.53 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=152.6
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.+++|..-|.+.+|++++......+... ++.. ++.+.--|. ..|.+-++|+.+.+
T Consensus 27 rL~sg~~~G~V~~w~lqt~r~~~~~r~~---g~~~---it~lq~~p~-------------------d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 27 RLMSGLSVGIVKMWVLQTERDLPLIRLF---GRLF---ITNLQSIPN-------------------DSLDTQGRDPLLIL 81 (323)
T ss_pred hhhcccccceEEEEEeecCccchhhhhh---ccce---eeceeecCC-------------------cchhhcCCCceEEE
Confidence 3799999999999999998766655421 1111 011222222 35666778888888
Q ss_pred EEccCCccccccc----------------ccc-----------------CC--ceeEEeee----ccccccEEEEEeeee
Q 021036 99 WRICVPKCYSVED----------------CKV-----------------PT--TAVLIGLF----QAHNSWITSISLAVL 139 (318)
Q Consensus 99 w~~~~~~~~~~~~----------------~~~-----------------~~--~~~~~~~~----~~h~~~v~~~~~~p~ 139 (318)
|++..+....+.. .++ .. ....++.. .+..+.+.|..|
T Consensus 82 w~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~--- 158 (323)
T KOG0322|consen 82 WTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDK--- 158 (323)
T ss_pred EEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeec---
Confidence 8876533211100 000 00 00001111 123455666665
Q ss_pred cCCCCCCC--cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 140 SSDSSNPQ--VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 140 ~~~~~~~~--~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
....+ -+|+.|-++|.|.+||+..+...-.++.... .......|..+|.++.+. +.-..=++|+.+
T Consensus 159 ---~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~k----v~~~~ash~qpvlsldya-----s~~~rGisgga~ 226 (323)
T KOG0322|consen 159 ---DHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSK----VESPNASHKQPVLSLDYA-----SSCDRGISGGAD 226 (323)
T ss_pred ---cccccceEEEEEeccCCeEEEEEccCCceeeccccccc----cccchhhccCcceeeeec-----hhhcCCcCCCcc
Confidence 11222 3566677899999999998754433332111 111224567789999998 665666788888
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCc
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDA 297 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h 297 (318)
..+.+|.++-.++....-.+..-....|..+..-||++.+||++.|+.||+|..++..... -+.-|
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLA--------------VLkyH 292 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLA--------------VLKYH 292 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchh--------------hhhhh
Confidence 8999998776666543333333344568889999999999999999999999998865442 12236
Q ss_pred ceeeeEEEEcCCCcEEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~ 316 (318)
++.|++++|+||...+|.+
T Consensus 293 sagvn~vAfspd~~lmAaa 311 (323)
T KOG0322|consen 293 SAGVNAVAFSPDCELMAAA 311 (323)
T ss_pred hcceeEEEeCCCCchhhhc
Confidence 6799999999998888765
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=5.8e-13 Score=113.24 Aligned_cols=190 Identities=12% Similarity=0.111 Sum_probs=116.3
Q ss_pred ccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEE
Q 021036 84 FSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRI 161 (318)
Q Consensus 84 ~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~i 161 (318)
+++|++++ .++.|.+|++++.... .+.+..+.+ .....++.+ +++++++++++ .++.|.+
T Consensus 91 g~~l~v~~~~~~~v~v~~~~~~g~~----------~~~~~~~~~-~~~~~~~~~-------~p~g~~l~v~~~~~~~v~v 152 (330)
T PRK11028 91 GRFLFSASYNANCVSVSPLDKDGIP----------VAPIQIIEG-LEGCHSANI-------DPDNRTLWVPCLKEDRIRL 152 (330)
T ss_pred CCEEEEEEcCCCeEEEEEECCCCCC----------CCceeeccC-CCcccEeEe-------CCCCCEEEEeeCCCCEEEE
Confidence 37777665 4889999999743211 112222222 234577888 88888876555 5699999
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeec
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
||+.+...+........ . .........+.|+ |+++++++++. ++.|.+|+++..+++.+.+..+..
T Consensus 153 ~d~~~~g~l~~~~~~~~------~--~~~g~~p~~~~~~-----pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~ 219 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEV------T--TVEGAGPRHMVFH-----PNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDM 219 (330)
T ss_pred EEECCCCcccccCCCce------e--cCCCCCCceEEEC-----CCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEec
Confidence 99976332211000000 0 0011245678999 99999988876 999999987654444444444432
Q ss_pred c------cCceeEEEEcCCCCEEEEec-CCCcEEEEEecCCc-eeee-ecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 241 H------DQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFHGNS-LSQV-SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 241 h------~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~-~~~~-~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
+ ......+.++|++++++++. .++.|.+|++.... ...+ ...+.. .....++|+|||+
T Consensus 220 ~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-------------~~p~~~~~~~dg~ 286 (330)
T PRK11028 220 MPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-------------TQPRGFNIDHSGK 286 (330)
T ss_pred CCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-------------ccCCceEECCCCC
Confidence 2 11234688999999888875 47899999996532 1111 111100 1345789999999
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
+|+++.
T Consensus 287 ~l~va~ 292 (330)
T PRK11028 287 YLIAAG 292 (330)
T ss_pred EEEEEE
Confidence 988764
No 192
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.62 E-value=4.4e-14 Score=111.74 Aligned_cols=208 Identities=12% Similarity=0.022 Sum_probs=141.6
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
+.+||+|..|++-+.|..+++|++-............. .+....++ .....|..-+|=|......|+..++++.+.|
T Consensus 55 ckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~--~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 55 CKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLN--FSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ceeCCCCceEEeecccCeeeEEecChhhcccCCCCccc--cccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 34444449999999999999999864221100000000 01111111 1245688888877776667888999999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
.-|++||..+|+....+...... .++ ....+++|+ |||..|+.|. ...|++||+. +.++..++.
T Consensus 133 ~PIh~wdaftG~lraSy~~ydh~----de~-----taAhsL~Fs-----~DGeqlfaGy-krcirvFdt~-RpGr~c~vy 196 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRASYRAYDHQ----DEY-----TAAHSLQFS-----PDGEQLFAGY-KRCIRVFDTS-RPGRDCPVY 196 (406)
T ss_pred CceeeeeccccccccchhhhhhH----Hhh-----hhheeEEec-----CCCCeEeecc-cceEEEeecc-CCCCCCcch
Confidence 99999999999887766543310 011 134688999 9999999886 7889999642 334332333
Q ss_pred eee-----cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCC
Q 021036 237 SYN-----AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGN 310 (318)
Q Consensus 237 ~~~-----~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~ 310 (318)
... +..+.|.+++|+|. ...++.++....+-||.-..+....+ +.+|.+.|+.+.|++||
T Consensus 197 ~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~l--------------lggh~gGvThL~~~edG 262 (406)
T KOG2919|consen 197 TTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQL--------------LGGHGGGVTHLQWCEDG 262 (406)
T ss_pred hhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceee--------------ecccCCCeeeEEeccCc
Confidence 322 23677899999995 55899999999988887666554432 22466799999999999
Q ss_pred cEEEEEe
Q 021036 311 LVVAMVQ 317 (318)
Q Consensus 311 ~~l~~~~ 317 (318)
..|.+|-
T Consensus 263 n~lfsGa 269 (406)
T KOG2919|consen 263 NKLFSGA 269 (406)
T ss_pred Ceecccc
Confidence 9988874
No 193
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=3.8e-14 Score=125.34 Aligned_cols=197 Identities=22% Similarity=0.331 Sum_probs=145.5
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
+|+++++++... +..|.||...+++| +..+.+|..++..+.+.|.. .+-.++.+++.||.|
T Consensus 24 fSnD~k~l~~~~-~~~V~VyS~~Tg~~--------------i~~l~~~~a~l~s~~~~~~~----~~~~~~~~~sl~G~I 84 (792)
T KOG1963|consen 24 FSNDAKFLFLCT-GNFVKVYSTATGEC--------------ITSLEDHTAPLTSVIVLPSS----ENANYLIVCSLDGTI 84 (792)
T ss_pred cccCCcEEEEee-CCEEEEEecchHhh--------------hhhcccccCccceeeecCCC----ccceEEEEEecCccE
Confidence 556667777665 45799999999764 45889999999999995542 223578899999999
Q ss_pred EEEECCCcceeeeecccccccccce-------------------------------------------------------
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLK------------------------------------------------------- 184 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~------------------------------------------------------- 184 (318)
++||...+.+++++..+........
T Consensus 85 ~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~ 164 (792)
T KOG1963|consen 85 RVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPK 164 (792)
T ss_pred EEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCc
Confidence 9999998887765532211000000
Q ss_pred ----------------------------------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC-C
Q 021036 185 ----------------------------------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS-C 229 (318)
Q Consensus 185 ----------------------------------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~ 229 (318)
.....|...+++.+++ |+++++|+|..||.|.+|. +.. .
T Consensus 165 ~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~s-----pn~~~~Aa~d~dGrI~vw~-d~~~~ 238 (792)
T KOG1963|consen 165 SIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALS-----PNERYLAAGDSDGRILVWR-DFGSS 238 (792)
T ss_pred cEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEec-----cccceEEEeccCCcEEEEe-ccccc
Confidence 0011244557888898 9999999999999999995 443 2
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
..-.....+.-|...|.+++|+++|.+|++|+..|.+.+|.+.+++..-++.- .++|..+.++||
T Consensus 239 ~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRL---------------gs~I~~i~vS~d 303 (792)
T KOG1963|consen 239 DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRL---------------GSPILHIVVSPD 303 (792)
T ss_pred cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccccccc---------------CCeeEEEEEcCC
Confidence 22224456777999999999999999999999999999999998773332222 248999999999
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
+.+.+..
T Consensus 304 s~~~sl~ 310 (792)
T KOG1963|consen 304 SDLYSLV 310 (792)
T ss_pred CCeEEEE
Confidence 9876654
No 194
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.1e-14 Score=117.17 Aligned_cols=195 Identities=18% Similarity=0.086 Sum_probs=129.7
Q ss_pred ccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcE
Q 021036 17 THPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKV 96 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i 96 (318)
...+.++..||++|+|+.++...+.... .|..+|.+++||+++++|++-+.| ..
T Consensus 156 gs~latgg~dg~lRv~~~Ps~~t~l~e~-------------------------~~~~eV~DL~FS~dgk~lasig~d-~~ 209 (398)
T KOG0771|consen 156 GSKLATGGTDGTLRVWEWPSMLTILEEI-------------------------AHHAEVKDLDFSPDGKFLASIGAD-SA 209 (398)
T ss_pred CCEeeeccccceEEEEecCcchhhhhhH-------------------------hhcCccccceeCCCCcEEEEecCC-ce
Confidence 3557899999999999988765422222 233455666666666999999999 89
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC-----cEEEEEeCCCcEEEEECCCcceee
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ-----VLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
+||+.+++.++.. .+-.........++| ..++ .+++....-+.|+.||+..-+.-.
T Consensus 210 ~VW~~~~g~~~a~------------~t~~~k~~~~~~cRF-------~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~ 270 (398)
T KOG0771|consen 210 RVWSVNTGAALAR------------KTPFSKDEMFSSCRF-------SVDNAQETLRLAASQFPGGGVRLCDISLWSGSN 270 (398)
T ss_pred EEEEeccCchhhh------------cCCcccchhhhhcee-------cccCCCceEEEEEecCCCCceeEEEeeeecccc
Confidence 9999999754310 111122334556666 4444 223333345677777765322111
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..... ......|++++++ ++|++++.|+.||.|.++ +....+. ....-+.|...|+.+.|+
T Consensus 271 ~l~~~~~---------~~~~~siSsl~VS-----~dGkf~AlGT~dGsVai~--~~~~lq~-~~~vk~aH~~~VT~ltF~ 333 (398)
T KOG0771|consen 271 FLRLRKK---------IKRFKSISSLAVS-----DDGKFLALGTMDGSVAIY--DAKSLQR-LQYVKEAHLGFVTGLTFS 333 (398)
T ss_pred ccchhhh---------hhccCcceeEEEc-----CCCcEEEEeccCCcEEEE--Eeceeee-eEeehhhheeeeeeEEEc
Confidence 1111100 1112279999999 999999999999999999 4444332 222335799999999999
Q ss_pred CCCCEEEEecCCCcEEEEEecC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
|+.+++++.+.|.+..+..+.-
T Consensus 334 Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 334 PDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcCcccccccCCceeEEEEee
Confidence 9999999999999999988765
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.61 E-value=5e-14 Score=121.33 Aligned_cols=198 Identities=12% Similarity=0.155 Sum_probs=131.0
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|..+++-|+|..|+.+. +..+.+||.+.| .+++++++|.+.|+|++| +.+|+.+++|+
T Consensus 15 i~d~afkPDGsqL~lAA-g~rlliyD~ndG--------------~llqtLKgHKDtVycVAy-------s~dGkrFASG~ 72 (1081)
T KOG1538|consen 15 INDIAFKPDGTQLILAA-GSRLLVYDTSDG--------------TLLQPLKGHKDTVYCVAY-------AKDGKRFASGS 72 (1081)
T ss_pred hheeEECCCCceEEEec-CCEEEEEeCCCc--------------ccccccccccceEEEEEE-------ccCCceeccCC
Confidence 44444444446655554 347999999985 477899999999999999 99999999999
Q ss_pred CCCcEEEEECCCcceeee---ecccccccccce------------------ee--eeecccceeEEEEeeccCCCCceEE
Q 021036 155 SDGSVRIWDGYIQELQKS---AEAHCVPFSLLK------------------EV--VTVNTVPISVLSLILPVQSPRLMLL 211 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~---~~~~~~~~~~~~------------------~~--~~~~~~~v~~l~~~~~~~~~~~~~l 211 (318)
.|..|.+|.-.-...++- -......|++.. .. .......+.+++|. .||.+|
T Consensus 73 aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWt-----nDGqyl 147 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWT-----NDGQYL 147 (1081)
T ss_pred CceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeec-----CCCcEE
Confidence 999999998653221110 000111111111 00 11123356777787 899999
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCC-----CEEEEecCCCcEEEEEecCCceeeeecCCCCC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDG-----CCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
+.|-.||+|.+- +........+....+...+|++++|+|.. ..++......++.++.+.+.....-.....
T Consensus 148 alG~~nGTIsiR--Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~F-- 223 (1081)
T KOG1538|consen 148 ALGMFNGTISIR--NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNF-- 223 (1081)
T ss_pred EEeccCceEEee--cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCC--
Confidence 999999999996 33232222344445678899999999962 378888888999999887644432211111
Q ss_pred CccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...++++.|+|.|++.|
T Consensus 224 -------------dP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 224 -------------DPCCISYFTNGEYILLG 240 (1081)
T ss_pred -------------CchhheeccCCcEEEEc
Confidence 11577777888877765
No 196
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=8.2e-13 Score=115.27 Aligned_cols=186 Identities=26% Similarity=0.415 Sum_probs=133.1
Q ss_pred eCCCceeEeecCC-CCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC-CCcEEEEEc
Q 021036 24 SKSKGNSITKIPS-NCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR-SGKVSLWRI 101 (318)
Q Consensus 24 s~d~~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~-dg~i~iw~~ 101 (318)
..|+.+.+|+... ......+.. |... +..++|+|.+ ..+++++. |+.+++|+.
T Consensus 131 ~~d~~~~~~~~~~~~~~~~~~~~----~~~~---v~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~ 185 (466)
T COG2319 131 SLDGTVKLWDLSTPGKLIRTLEG----HSES---VTSLAFSPDG------------------KLLASGSSLDGTIKLWDL 185 (466)
T ss_pred CCCccEEEEEecCCCeEEEEEec----Cccc---EEEEEECCCC------------------CEEEecCCCCCceEEEEc
Confidence 3488888898876 322222221 2222 1235566655 78888885 999999999
Q ss_pred cCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceee-eecccccc
Q 021036 102 CVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQK-SAEAHCVP 179 (318)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~-~~~~~~~~ 179 (318)
..+ ..+..+.+|...|.+++| .+++. .+++++.|+.+++||...+.... .+..+..
T Consensus 186 ~~~--------------~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~- 243 (466)
T COG2319 186 RTG--------------KPLSTLAGHTDPVSSLAF-------SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD- 243 (466)
T ss_pred CCC--------------ceEEeeccCCCceEEEEE-------cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-
Confidence 873 356677789999999999 67776 55555999999999988666665 3444432
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEE
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 259 (318)
.. ...|+ +++..+++++.|+.+++|+...... .+..+.+|...+.++.|+|++..+++
T Consensus 244 -------------~~-~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 244 -------------SV-VSSFS-----PDGSLLASGSSDGTIRLWDLRSSSS---LLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred -------------ce-eEeEC-----CCCCEEEEecCCCcEEEeeecCCCc---EEEEEecCCccEEEEEECCCCCEEEE
Confidence 22 22677 7888888999999999995443332 22333678899999999998888888
Q ss_pred ecCCCcEEEEEecCCceee
Q 021036 260 CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~~~ 278 (318)
++.|+.+.+||........
T Consensus 302 ~~~d~~~~~~~~~~~~~~~ 320 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLS 320 (466)
T ss_pred eeCCCcEEEEEcCCCceEE
Confidence 9999899999887765443
No 197
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=4.6e-13 Score=107.77 Aligned_cols=165 Identities=21% Similarity=0.154 Sum_probs=119.0
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.+++.+++.+. .+..+ ....+|.+++. +.+.|+++-.+. |.|||++..+.++++.
T Consensus 69 ~Lkv~~~Kk~~--------------~ICe~-~fpt~IL~Vrm---------Nr~RLvV~Lee~-IyIydI~~MklLhTI~ 123 (391)
T KOG2110|consen 69 KLKVVHFKKKT--------------TICEI-FFPTSILAVRM---------NRKRLVVCLEES-IYIYDIKDMKLLHTIE 123 (391)
T ss_pred eEEEEEcccCc--------------eEEEE-ecCCceEEEEE---------ccceEEEEEccc-EEEEecccceeehhhh
Confidence 47888887643 22332 23567888888 345677776654 9999999999998876
Q ss_pred ccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe--CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 175 AHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK--GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
.... +...+.+++.+ +.+.++|--+ ..|.|.+| |..+-+ ++..+..|.+.+.+++|++
T Consensus 124 t~~~-----------n~~gl~AlS~n-----~~n~ylAyp~s~t~GdV~l~--d~~nl~--~v~~I~aH~~~lAalafs~ 183 (391)
T KOG2110|consen 124 TTPP-----------NPKGLCALSPN-----NANCYLAYPGSTTSGDVVLF--DTINLQ--PVNTINAHKGPLAALAFSP 183 (391)
T ss_pred ccCC-----------CccceEeeccC-----CCCceEEecCCCCCceEEEE--Ecccce--eeeEEEecCCceeEEEECC
Confidence 4321 22345555555 5555666533 57899999 444544 7888899999999999999
Q ss_pred CCCEEEEecCCCc-EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 253 DGCCLYSCSQDNF-VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 253 ~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|.+|||+++.|+ ||+|.+.+++....-.... .-..|++++|+||+++|++.
T Consensus 184 ~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~------------~~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 184 DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGT------------YPVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred CCCEEEEeccCceEEEEEEcCCccEeeeeeCCc------------eeeEEEEEEECCCCCeEEEe
Confidence 9999999999997 8999998776543221111 12478999999999999875
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=1.6e-14 Score=121.61 Aligned_cols=178 Identities=13% Similarity=0.103 Sum_probs=125.2
Q ss_pred ccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCC
Q 021036 66 LRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSS 144 (318)
Q Consensus 66 ~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~ 144 (318)
..+.+|.+.|.+++++.+|.+|++|+.|-.+.|||.-.. +++..+ .+|.+.|.++.|.|..
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~--------------KllhsI~TgHtaNIFsvKFvP~t---- 105 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY--------------KLLHSISTGHTANIFSVKFVPYT---- 105 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhc--------------ceeeeeecccccceeEEeeeccC----
Confidence 347889999999999999999999999999999999853 344444 6899999999997754
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEe
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLW 223 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw 223 (318)
+.+++++|..|..|+++|+...+.-..-.+... .......|...|..|+.. |++ ..|.+++.||+|+.|
T Consensus 106 -nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~----~~~~~~cht~rVKria~~-----p~~PhtfwsasEDGtirQy 175 (758)
T KOG1310|consen 106 -NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEE----TTRCWSCHTDRVKRIATA-----PNGPHTFWSASEDGTIRQY 175 (758)
T ss_pred -CCeEEEeccCcceEEEEecccccccccccCccc----hhhhhhhhhhhhhheecC-----CCCCceEEEecCCcceeee
Confidence 346899999999999999985322111000000 001123455567777777 666 899999999999999
Q ss_pred eeccCCCeeeE-------eeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEec
Q 021036 224 KCDISCNKFDK-------VGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 224 ~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~ 272 (318)
|+.... .+.+ +..+...--...++..+|. ..+|+.|+.|-..++||.+
T Consensus 176 DiREph-~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 176 DIREPH-VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred cccCCc-cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 553211 1001 0111111223468889996 5589999999999999954
No 199
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=2.8e-13 Score=105.24 Aligned_cols=117 Identities=24% Similarity=0.366 Sum_probs=87.7
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEE--eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTG--SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.++|.+++| +|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+
T Consensus 59 ~~~I~~~~W-------sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~----------------~~~~n~i~ws----- 109 (194)
T PF08662_consen 59 EGPIHDVAW-------SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG----------------TQPRNTISWS----- 109 (194)
T ss_pred CCceEEEEE-------CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec----------------CCCceEEEEC-----
Confidence 457999999 8898887654 457899999996 44444443 2367889999
Q ss_pred CCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------CCcEEEEEecCCce
Q 021036 206 PRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------DNFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------d~~v~iwd~~~~~~ 276 (318)
|+|+++++++. .|.|.+| |.+..+ .+.+.. |. .++.++|+|+|++|+++.. |..++||+..+..+
T Consensus 110 P~G~~l~~~g~~n~~G~l~~w--d~~~~~--~i~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l 183 (194)
T PF08662_consen 110 PDGRFLVLAGFGNLNGDLEFW--DVRKKK--KISTFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLL 183 (194)
T ss_pred CCCCEEEEEEccCCCcEEEEE--ECCCCE--Eeeccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEe
Confidence 99999999874 4679999 455444 555543 33 4789999999999998864 78899999987665
Q ss_pred eee
Q 021036 277 SQV 279 (318)
Q Consensus 277 ~~~ 279 (318)
...
T Consensus 184 ~~~ 186 (194)
T PF08662_consen 184 YKK 186 (194)
T ss_pred Eec
Confidence 543
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.60 E-value=2.2e-12 Score=109.65 Aligned_cols=226 Identities=12% Similarity=0.048 Sum_probs=133.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-cCCCcEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-GRSGKVSL 98 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-~~dg~i~i 98 (318)
.++...|+.|++||+.+...+..+.. ....+. ...+.++|++ ++|+++ ..++.|.+
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~--~~~~~~---~~~l~~spd~------------------~~lyv~~~~~~~i~~ 61 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQV--VDVPGQ---VQPMVISPDK------------------RHLYVGVRPEFRVLS 61 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeE--EecCCC---CccEEECCCC------------------CEEEEEECCCCcEEE
Confidence 45567899999999975332222221 111111 2226666666 877665 45888999
Q ss_pred EEccC-CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCc-ceeeeecc
Q 021036 99 WRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQ-ELQKSAEA 175 (318)
Q Consensus 99 w~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~-~~~~~~~~ 175 (318)
|+++. +. ........ .......+.+ ++++++|++++. ++.|.+|++... ........
T Consensus 62 ~~~~~~g~------------l~~~~~~~-~~~~p~~i~~-------~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~ 121 (330)
T PRK11028 62 YRIADDGA------------LTFAAESP-LPGSPTHIST-------DHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQI 121 (330)
T ss_pred EEECCCCc------------eEEeeeec-CCCCceEEEE-------CCCCCEEEEEEcCCCeEEEEEECCCCCCCCceee
Confidence 99973 22 11222222 2234567999 899998888775 789999999642 21111110
Q ss_pred cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEe----eeeecccCceeEEEE
Q 021036 176 HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKV----GSYNAHDQVVTGLAW 250 (318)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~----~~~~~h~~~v~~~~~ 250 (318)
. ........++++ |+++++++++ .++.|.+|+++. .+...+. .... .......+.|
T Consensus 122 ~------------~~~~~~~~~~~~-----p~g~~l~v~~~~~~~v~v~d~~~-~g~l~~~~~~~~~~~-~g~~p~~~~~ 182 (330)
T PRK11028 122 I------------EGLEGCHSANID-----PDNRTLWVPCLKEDRIRLFTLSD-DGHLVAQEPAEVTTV-EGAGPRHMVF 182 (330)
T ss_pred c------------cCCCcccEeEeC-----CCCCEEEEeeCCCCEEEEEEECC-CCcccccCCCceecC-CCCCCceEEE
Confidence 0 011234667888 8988776554 679999997653 2222110 1111 1234578999
Q ss_pred cCCCCEEEEecC-CCcEEEEEecC--Cceee---eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 251 AFDGCCLYSCSQ-DNFVRSWIFHG--NSLSQ---VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 251 ~~~~~~l~s~~~-d~~v~iwd~~~--~~~~~---~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+|+|++++++.. +++|.+|++.. +.... +...+. ... +......+.|+|+|++++++
T Consensus 183 ~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~--------~~~-~~~~~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 183 HPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPA--------DFS-DTRWAADIHITPDGRHLYAC 245 (330)
T ss_pred CCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCC--------cCC-CCccceeEEECCCCCEEEEe
Confidence 999999887766 89999999973 33221 111111 000 11123468899999988876
No 201
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=6.6e-13 Score=101.25 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=113.2
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
|+++-..|..+-++.++.|+.++-||+++| +..+.+++|++.|.++.- ......+++|+
T Consensus 117 INam~ldP~enSi~~AgGD~~~y~~dlE~G--------------~i~r~~rGHtDYvH~vv~-------R~~~~qilsG~ 175 (325)
T KOG0649|consen 117 INAMWLDPSENSILFAGGDGVIYQVDLEDG--------------RIQREYRGHTDYVHSVVG-------RNANGQILSGA 175 (325)
T ss_pred cceeEeccCCCcEEEecCCeEEEEEEecCC--------------EEEEEEcCCcceeeeeee-------cccCcceeecC
Confidence 344444544466666668999999999994 577899999999999987 44555799999
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
.||++++||.+++++++.+.....+-.. .......|.+++.+ ...+++|+ ...+.+| .++..+...
T Consensus 176 EDGtvRvWd~kt~k~v~~ie~yk~~~~l----Rp~~g~wigala~~-------edWlvCGg-Gp~lslw--hLrsse~t~ 241 (325)
T KOG0649|consen 176 EDGTVRVWDTKTQKHVSMIEPYKNPNLL----RPDWGKWIGALAVN-------EDWLVCGG-GPKLSLW--HLRSSESTC 241 (325)
T ss_pred CCccEEEEeccccceeEEeccccChhhc----CcccCceeEEEecc-------CceEEecC-CCceeEE--eccCCCceE
Confidence 9999999999999999988766543211 11123345566554 45666655 6789999 555555334
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+..+. +.+..+.|..+ .++++++.+.|.-|.+.+-
T Consensus 242 vfpip---a~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 242 VFPIP---ARVHLVDFVDD--CVLIGGEGNHVQSYTLNGV 276 (325)
T ss_pred EEecc---cceeEeeeecc--eEEEeccccceeeeeeccE
Confidence 44444 45566677644 5788888889999988653
No 202
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.59 E-value=1.7e-12 Score=113.27 Aligned_cols=218 Identities=26% Similarity=0.383 Sum_probs=155.5
Q ss_pred ccceEEeeCCCceeEeecCCCC-CCCceecchhccccccccceeeee-cccccCCCCcccccccCCCCCcc-EEEEe-cC
Q 021036 17 THPTVAASKSKGNSITKIPSNC-CLPLITADQYASRSAMLHSLAVAW-SPVLRLSSKKYPVPQNGSSNWFS-ILAVG-GR 92 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~w-~p~~~~~~~~~~v~~~~~s~~~~-~l~~g-~~ 92 (318)
...++.++.|+.+.+|+...+. ....+.... . .....+.+ .+.. . +++.. ..
T Consensus 77 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~~------------------~~~~~~~~~~ 132 (466)
T COG2319 77 GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLH----D--SSVSKLALSSPDG------------------NSILLASSSL 132 (466)
T ss_pred CcEEEEecCCCcEEEEEcCCCceeEEEEeccC----C--CceeeEEEECCCc------------------ceEEeccCCC
Confidence 3445667789999999998876 322222211 0 01111233 4444 4 45554 44
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~~~~~~ 171 (318)
|+.+++|+.... ......+..|...|..+.| .++++.+++++. |+.+++|++..+....
T Consensus 133 d~~~~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (466)
T COG2319 133 DGTVKLWDLSTP-------------GKLIRTLEGHSESVTSLAF-------SPDGKLLASGSSLDGTIKLWDLRTGKPLS 192 (466)
T ss_pred CccEEEEEecCC-------------CeEEEEEecCcccEEEEEE-------CCCCCEEEecCCCCCceEEEEcCCCceEE
Confidence 999999999861 2355678899999999999 888888888885 9999999999866666
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeeeEee-eeecccCceeEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFDKVG-SYNAHDQVVTGLA 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~h~~~v~~~~ 249 (318)
.+.. |...+.++.++ |++. .+++++.|+.|++| +...+. .+. .+.+|.... ...
T Consensus 193 ~~~~--------------~~~~v~~~~~~-----~~~~~~~~~~~~d~~i~~w--d~~~~~--~~~~~~~~~~~~~-~~~ 248 (466)
T COG2319 193 TLAG--------------HTDPVSSLAFS-----PDGGLLIASGSSDGTIRLW--DLSTGK--LLRSTLSGHSDSV-VSS 248 (466)
T ss_pred eecc--------------CCCceEEEEEc-----CCcceEEEEecCCCcEEEE--ECCCCc--EEeeecCCCCcce-eEe
Confidence 6554 34489999998 8887 55555899999999 444444 444 577777765 348
Q ss_pred EcCCCCEEEEecCCCcEEEEEecCCce-eeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHGNSL-SQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|+|++.++++++.|+.+++|++..... .... .+|...+.++.|+|++..++++
T Consensus 249 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------------~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--------------SGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred ECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--------------ecCCccEEEEEECCCCCEEEEe
Confidence 999998899999999999999986554 2111 1244588999999988877764
No 203
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.1e-14 Score=120.25 Aligned_cols=184 Identities=15% Similarity=0.140 Sum_probs=140.3
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.++.|+.-|.+..+|..+++....+.... . +..+.|-... +++|++- ...+.|
T Consensus 143 hlllgGrKGHlAa~Dw~t~~L~~Ei~v~E-----t---v~Dv~~LHne------------------q~~AVAQ-K~y~yv 195 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTKKLHFEINVME-----T---VRDVTFLHNE------------------QFFAVAQ-KKYVYV 195 (545)
T ss_pred EEEecCCccceeeeecccceeeeeeehhh-----h---hhhhhhhcch------------------HHHHhhh-hceEEE
Confidence 35677778888888888877655554321 1 1114444444 7887764 567999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
||-.. ..+..++.| ..|..+.| -|.--+|++++..|.++--|+..|+.+..+.....
T Consensus 196 YD~~G---------------tElHClk~~-~~v~rLeF-------LPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G 252 (545)
T KOG1272|consen 196 YDNNG---------------TELHCLKRH-IRVARLEF-------LPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG 252 (545)
T ss_pred ecCCC---------------cEEeehhhc-Cchhhhcc-------cchhheeeecccCCceEEEeechhhhhHHHHccCC
Confidence 99774 345566655 47899999 55556788999999999999999998877654332
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLY 258 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 258 (318)
.+..++-+ |-...+-+|..+|+|.+| .....+ ++..+..|.++|.++++.++|+|++
T Consensus 253 --------------~~~vm~qN-----P~NaVih~GhsnGtVSlW--SP~ske--PLvKiLcH~g~V~siAv~~~G~YMa 309 (545)
T KOG1272|consen 253 --------------RTDVMKQN-----PYNAVIHLGHSNGTVSLW--SPNSKE--PLVKILCHRGPVSSIAVDRGGRYMA 309 (545)
T ss_pred --------------ccchhhcC-----CccceEEEcCCCceEEec--CCCCcc--hHHHHHhcCCCcceEEECCCCcEEe
Confidence 45556666 888899999999999999 555555 7777888999999999999999999
Q ss_pred EecCCCcEEEEEecCCc
Q 021036 259 SCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~ 275 (318)
|.+.|..++|||++.-.
T Consensus 310 TtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 310 TTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ecccccceeEeeecccc
Confidence 99999999999998744
No 204
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.56 E-value=2.7e-13 Score=119.15 Aligned_cols=206 Identities=15% Similarity=0.071 Sum_probs=138.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceec-chhcc----ccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITA-DQYAS----RSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
+.++++|.||.|..|++..-........ ....+ ......+++++|.|.. .+.++.|+.
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-----------------p~~FiVGTe 368 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-----------------PNHFIVGTE 368 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC-----------------CceEEEEcC
Confidence 6699999999999997765433111111 11111 1122334556666655 578999999
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~ 171 (318)
+|.|.--+....+... ....+.+..+..|.++|+++.++||.. ..|++++ |.+|+||... ....+.
T Consensus 369 ~G~v~~~~r~g~~~~~------~~~~~~~~~~~~h~g~v~~v~~nPF~~------k~fls~g-DW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 369 EGKVYKGCRKGYTPAP------EVSYKGHSTFITHIGPVYAVSRNPFYP------KNFLSVG-DWTVRIWSEDVIASPLL 435 (555)
T ss_pred CcEEEEEeccCCcccc------cccccccccccccCcceEeeecCCCcc------ceeeeec-cceeEeccccCCCCcch
Confidence 9998864443322100 000123445667899999999955543 2355555 9999999877 444444
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.+..+. ..+++++|+ |-....|+++..+|.+.+||+..+... ++.+...+....+.+.|+
T Consensus 436 ~~~~~~--------------~~v~~vaWS----ptrpavF~~~d~~G~l~iWDLl~~~~~--Pv~s~~~~~~~l~~~~~s 495 (555)
T KOG1587|consen 436 SLDSSP--------------DYVTDVAWS----PTRPAVFATVDGDGNLDIWDLLQDDEE--PVLSQKVCSPALTRVRWS 495 (555)
T ss_pred hhhhcc--------------ceeeeeEEc----CcCceEEEEEcCCCceehhhhhccccC--CcccccccccccceeecC
Confidence 443332 258999999 234679999999999999965544444 777766666677888899
Q ss_pred CCCCEEEEecCCCcEEEEEecC
Q 021036 252 FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.|+.|++|...|++.+|++..
T Consensus 496 ~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 496 PNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCcEEEEecCCCcEEEEEcCc
Confidence 9999999999999999999964
No 205
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.55 E-value=2e-13 Score=114.74 Aligned_cols=185 Identities=16% Similarity=0.151 Sum_probs=123.4
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEE-eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLI-GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.+--|+.|-.-|.|.+.|....+.. ++. ....-....|+|+.|-| .+...|+.+-.+|.+.+
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~s-----------klfne~r~i~ktsvT~ikWvp------g~~~~Fl~a~~sGnlyl 246 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVS-----------KLFNEERLINKSSVTCIKWVP------GSDSLFLVAHASGNLYL 246 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHH-----------HhhhhcccccccceEEEEEEe------CCCceEEEEEecCceEE
Confidence 4456777888888888877642211 000 00011236899999932 23346777778999999
Q ss_pred EECCCccee-----e------eeccccc---cc-ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 162 WDGYIQELQ-----K------SAEAHCV---PF-SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 162 wd~~~~~~~-----~------~~~~~~~---~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
||....... . .+..+.. .- +++.. .......|+..+|+ |||++||+.+.||.++||+++
T Consensus 247 y~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~-w~~~~g~in~f~FS-----~DG~~LA~VSqDGfLRvF~fd 320 (636)
T KOG2394|consen 247 YDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVAR-WHIGEGSINEFAFS-----PDGKYLATVSQDGFLRIFDFD 320 (636)
T ss_pred eeccccccCCCCcccccCCCCeeEEeeeeccccCCccce-eEeccccccceeEc-----CCCceEEEEecCceEEEeecc
Confidence 987421100 0 0110000 00 11111 12234478899999 899999999999999999654
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEE
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAV 306 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~ 306 (318)
+.+ .+..++..-+...|++|+|||++|++|++|.-|.||.+..+.+.. ...+|...|..|+|
T Consensus 321 --t~e--Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVA--------------RGqGHkSWVs~VaF 382 (636)
T KOG2394|consen 321 --TQE--LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVA--------------RGQGHKSWVSVVAF 382 (636)
T ss_pred --HHH--HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEE--------------eccccccceeeEee
Confidence 433 445556666789999999999999999999999999998777653 34468889999999
Q ss_pred cC
Q 021036 307 SP 308 (318)
Q Consensus 307 sp 308 (318)
.|
T Consensus 383 Dp 384 (636)
T KOG2394|consen 383 DP 384 (636)
T ss_pred cc
Confidence 97
No 206
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.53 E-value=5.3e-12 Score=101.73 Aligned_cols=151 Identities=21% Similarity=0.199 Sum_probs=114.9
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe--cCC
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG--GRS 93 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g--~~d 93 (318)
|..+++..-++. |.|+|+.+.+.+..+.... ++... + ++.+|.. .+.+||.- ...
T Consensus 96 Nr~RLvV~Lee~-IyIydI~~MklLhTI~t~~-~n~~g---l--~AlS~n~----------------~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 96 NRKRLVVCLEES-IYIYDIKDMKLLHTIETTP-PNPKG---L--CALSPNN----------------ANCYLAYPGSTTS 152 (391)
T ss_pred ccceEEEEEccc-EEEEecccceeehhhhccC-CCccc---e--EeeccCC----------------CCceEEecCCCCC
Confidence 455566666665 9999999988888775421 11111 1 3333332 22576653 347
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCc-EEEEECCCcceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGS-VRIWDGYIQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~ 172 (318)
|.|.|||..+ .+.+..+..|.+.+.+++| +++|.+|+|+|..|+ ||++.+.+|+.+..
T Consensus 153 GdV~l~d~~n--------------l~~v~~I~aH~~~lAalaf-------s~~G~llATASeKGTVIRVf~v~~G~kl~e 211 (391)
T KOG2110|consen 153 GDVVLFDTIN--------------LQPVNTINAHKGPLAALAF-------SPDGTLLATASEKGTVIRVFSVPEGQKLYE 211 (391)
T ss_pred ceEEEEEccc--------------ceeeeEEEecCCceeEEEE-------CCCCCEEEEeccCceEEEEEEcCCccEeee
Confidence 8999999987 5678889999999999999 999999999999886 68999999999888
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
|.-... ...|++|+|+ |++.+|++.+..++|++|.++.
T Consensus 212 FRRG~~------------~~~IySL~Fs-----~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 212 FRRGTY------------PVSIYSLSFS-----PDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeCCce------------eeEEEEEEEC-----CCCCeEEEecCCCeEEEEEecc
Confidence 764443 2278999999 9999999999999999998653
No 207
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.53 E-value=2.8e-12 Score=112.79 Aligned_cols=171 Identities=12% Similarity=0.059 Sum_probs=108.8
Q ss_pred cEEEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCC--c
Q 021036 85 SILAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDG--S 158 (318)
Q Consensus 85 ~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~--~ 158 (318)
+.|+..+. +..|.+|++.+++. +.+ ....+...++.| +++|+.|+ +.+.++ .
T Consensus 216 ~~la~~s~~~~~~~l~~~dl~~g~~------------~~l---~~~~g~~~~~~~-------SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 216 KKLAYVSFERGRSAIYVQDLATGQR------------ELV---ASFRGINGAPSF-------SPDGRRLALTLSRDGNPE 273 (433)
T ss_pred CEEEEEecCCCCcEEEEEECCCCCE------------EEe---ccCCCCccCceE-------CCCCCEEEEEEeCCCCce
Confidence 77777653 34699999987652 222 223334557899 89998765 455555 5
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ .......+|+ |+|+.|+.++ .+|...+|.++..+++.+.+.
T Consensus 274 Iy~~d~~~g~~~~-lt~~--------------~~~~~~~~~s-----pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt- 332 (433)
T PRK04922 274 IYVMDLGSRQLTR-LTNH--------------FGIDTEPTWA-----PDGKSIYFTSDRGGRPQIYRVAASGGSAERLT- 332 (433)
T ss_pred EEEEECCCCCeEE-CccC--------------CCCccceEEC-----CCCCEEEEEECCCCCceEEEEECCCCCeEEee-
Confidence 9999998776432 2211 1133467888 9998877665 456666666676665533332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+ +......++|+|+|++|+..+.++ .|.+||+.++....+.... ......|+|||++|+
T Consensus 333 ~--~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~----------------~~~~p~~spdG~~i~ 394 (433)
T PRK04922 333 F--QGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS----------------LDESPSFAPNGSMVL 394 (433)
T ss_pred c--CCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC----------------CCCCceECCCCCEEE
Confidence 2 233445689999999887664432 6999999877665433111 224568999999876
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 395 ~~ 396 (433)
T PRK04922 395 YA 396 (433)
T ss_pred EE
Confidence 54
No 208
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.53 E-value=5.4e-13 Score=104.16 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=134.6
Q ss_pred eeccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCC-c
Q 021036 6 DFTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNW-F 84 (318)
Q Consensus 6 ~~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~-~ 84 (318)
++||..+-+.+.+.+.++|-|.+..|||++++..-. +.. .+..|..+|.+++|+.. -
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkT---------------------QLIAHDKEV~DIaf~~~s~ 209 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKT---------------------QLIAHDKEVYDIAFLKGSR 209 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccc-eee---------------------EEEecCcceeEEEeccCcc
Confidence 467777778888999999999999999999872200 110 23334444555555443 4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~iwd 163 (318)
+.+|+.+.||+||+||++.-+.- ..+.+-.....+...++| +..+.++++|-..| ..|.|.|
T Consensus 210 ~~FASvgaDGSvRmFDLR~leHS-----------TIIYE~p~~~~pLlRLsw------nkqDpnymATf~~dS~~V~iLD 272 (364)
T KOG0290|consen 210 DVFASVGADGSVRMFDLRSLEHS-----------TIIYEDPSPSTPLLRLSW------NKQDPNYMATFAMDSNKVVILD 272 (364)
T ss_pred ceEEEecCCCcEEEEEecccccc-----------eEEecCCCCCCcceeecc------CcCCchHHhhhhcCCceEEEEE
Confidence 78999999999999999874421 111111122467788899 34555788887766 5799999
Q ss_pred CCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC--eeeEeeeeec
Q 021036 164 GYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN--KFDKVGSYNA 240 (318)
Q Consensus 164 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~--~~~~~~~~~~ 240 (318)
++... .+..+.. |.+.|+.++|. |.....+++++.|..+.+||++.--. ...++..+.
T Consensus 273 iR~P~tpva~L~~--------------H~a~VNgIaWa----PhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~- 333 (364)
T KOG0290|consen 273 IRVPCTPVARLRN--------------HQASVNGIAWA----PHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT- 333 (364)
T ss_pred ecCCCcceehhhc--------------CcccccceEec----CCCCceeeecCCcceEEEEecccccccCCCCchhhhh-
Confidence 98643 3344443 55699999999 35578999999999999997643221 111333333
Q ss_pred ccCceeEEEEcCC-CCEEEEecC
Q 021036 241 HDQVVTGLAWAFD-GCCLYSCSQ 262 (318)
Q Consensus 241 h~~~v~~~~~~~~-~~~l~s~~~ 262 (318)
-++.|..+.|++. +.+|+.+..
T Consensus 334 a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 334 AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred ccceeeeeeecccCCCEEEEEec
Confidence 4567999999974 668877754
No 209
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.7e-12 Score=111.00 Aligned_cols=202 Identities=13% Similarity=0.097 Sum_probs=126.8
Q ss_pred ceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec---CCCcEEEEEccCC
Q 021036 28 GNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG---RSGKVSLWRICVP 104 (318)
Q Consensus 28 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~ 104 (318)
.+.+||...... +.+.. .... .....|+|++ +.|+..+ .+..|.+|++.++
T Consensus 180 ~l~~~d~dg~~~-~~lt~----~~~~---~~~p~wSPDG------------------~~la~~s~~~g~~~i~i~dl~~G 233 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHR----SPQP---LMSPAWSPDG------------------SKLAYVTFESGRSALVIQTLANG 233 (429)
T ss_pred eEEEEcCCCCCC-EEeec----CCCc---eeeeEEcCCC------------------CEEEEEEecCCCcEEEEEECCCC
Confidence 566667765433 22221 1222 2337888887 7776543 2457899999876
Q ss_pred ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE-eCCC--cEEEEECCCcceeeeecccccccc
Q 021036 105 KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG-SSDG--SVRIWDGYIQELQKSAEAHCVPFS 181 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~--~v~iwd~~~~~~~~~~~~~~~~~~ 181 (318)
+ .+.+..+.++ +..+.| +|+|+.|+.. +.+| .|.+||+.+++.......
T Consensus 234 ~------------~~~l~~~~~~---~~~~~~-------SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~------ 285 (429)
T PRK03629 234 A------------VRQVASFPRH---NGAPAF-------SPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG------ 285 (429)
T ss_pred C------------eEEccCCCCC---cCCeEE-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC------
Confidence 5 2333333333 446899 8999888755 4454 588899987765432221
Q ss_pred cceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe
Q 021036 182 LLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 182 ~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 260 (318)
...+....|+ |+|+.|+..+. ++...+|.++..++..+. +..+........|+|+|++|+..
T Consensus 286 ---------~~~~~~~~wS-----PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~---lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 286 ---------RSNNTEPTWF-----PDSQNLAYTSDQAGRPQVYKVNINGGAPQR---ITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred ---------CCCcCceEEC-----CCCCEEEEEeCCCCCceEEEEECCCCCeEE---eecCCCCccCEEECCCCCEEEEE
Confidence 1245677898 99998776664 466777766776665333 23333445678999999988776
Q ss_pred cCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 261 SQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 261 ~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+.+ ..|.+||+.++....+.... ......|+|||++|+..
T Consensus 349 ~~~~g~~~I~~~dl~~g~~~~Lt~~~----------------~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGVQVLTDTF----------------LDETPSIAPNGTMVIYS 391 (429)
T ss_pred EccCCCceEEEEECCCCCeEEeCCCC----------------CCCCceECCCCCEEEEE
Confidence 543 35888999887665443211 12467899999988765
No 210
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9.5e-12 Score=109.58 Aligned_cols=171 Identities=12% Similarity=0.030 Sum_probs=108.3
Q ss_pred cEEEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCc--
Q 021036 85 SILAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGS-- 158 (318)
Q Consensus 85 ~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~-- 158 (318)
+.|+..+. +..|.+||+.+++. +.+..+.+.+...+| +|+|+.|+ +.+.++.
T Consensus 214 ~~lay~s~~~g~~~i~~~dl~~g~~---------------~~l~~~~g~~~~~~~-------SPDG~~la~~~~~~g~~~ 271 (435)
T PRK05137 214 QEITYMSYANGRPRVYLLDLETGQR---------------ELVGNFPGMTFAPRF-------SPDGRKVVMSLSQGGNTD 271 (435)
T ss_pred CEEEEEEecCCCCEEEEEECCCCcE---------------EEeecCCCcccCcEE-------CCCCCEEEEEEecCCCce
Confidence 77766543 46899999987642 223345566778899 89998765 5555655
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ ........|+ |+|+.++..+ .+|...+|.++..++..+.
T Consensus 272 Iy~~d~~~~~~~~-Lt~~--------------~~~~~~~~~s-----pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~--- 328 (435)
T PRK05137 272 IYTMDLRSGTTTR-LTDS--------------PAIDTSPSYS-----PDGSQIVFESDRSGSPQLYVMNADGSNPRR--- 328 (435)
T ss_pred EEEEECCCCceEE-ccCC--------------CCccCceeEc-----CCCCEEEEEECCCCCCeEEEEECCCCCeEE---
Confidence 7777887765432 2211 1234567888 9998877766 4454444444665654333
Q ss_pred eecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+..+...+....|+|+|++|+..+.+ ..|.+||+.++....+.. . ..+..++|+|||++|+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~---------------~~~~~p~~spDG~~i~ 392 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-G---------------FLVEGPTWAPNGRVIM 392 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-C---------------CCCCCCeECCCCCEEE
Confidence 33234456678899999988876543 358888876654433221 1 1346789999999887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 393 ~~ 394 (435)
T PRK05137 393 FF 394 (435)
T ss_pred EE
Confidence 54
No 211
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=5.5e-12 Score=110.65 Aligned_cols=171 Identities=12% Similarity=0.016 Sum_probs=108.9
Q ss_pred cEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCCcEE
Q 021036 85 SILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDGSVR 160 (318)
Q Consensus 85 ~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~~v~ 160 (318)
+.|+..+.+ ..|.+||+.+++. ..+ ....+.+....| +|+|+.|+ +.+.++...
T Consensus 208 ~~la~~s~~~~~~~I~~~dl~~g~~------------~~l---~~~~g~~~~~~~-------SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 208 TKLAYVSFESKKPVVYVHDLATGRR------------RVV---ANFKGSNSAPAW-------SPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred CEEEEEEccCCCcEEEEEECCCCCE------------EEe---ecCCCCccceEE-------CCCCCEEEEEEccCCCce
Confidence 777766532 3599999987652 222 223345568899 89998776 567788766
Q ss_pred EEEC--CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 161 IWDG--YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 161 iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
||.+ .++. ...+..+ ........|+ |||+.|+..+ .+|...+|.++..++..+.+.
T Consensus 266 Iy~~d~~~~~-~~~lt~~--------------~~~~~~~~wS-----pDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt- 324 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQS--------------SGIDTEPFFS-----PDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT- 324 (427)
T ss_pred EEEEECCCCC-cEECCCC--------------CCCCcCeEEc-----CCCCEEEEEecCCCCcEEEEEECCCCceEEEe-
Confidence 6654 3333 2222211 1134456788 9998777655 457788887776665533332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+. .......+|+|+|++|+..+.++ .|.+||+.++....+.... .....+|+|||++|+
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~----------------~~~~p~~spdg~~l~ 386 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT----------------RDESPSFAPNGRYIL 386 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC----------------CccCceECCCCCEEE
Confidence 22 23344678999999988776554 6999999887665443211 225679999999887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 387 ~~ 388 (427)
T PRK02889 387 YA 388 (427)
T ss_pred EE
Confidence 64
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.50 E-value=3.9e-13 Score=107.27 Aligned_cols=216 Identities=14% Similarity=0.134 Sum_probs=141.1
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc------------cccEEEEEeeeecCC
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH------------NSWITSISLAVLSSD 142 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~v~~~~~~p~~~~ 142 (318)
+.++.|...|.+||+|..+|.|.++.-+..... .......++.| ..+|+.++|++
T Consensus 28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~---------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~---- 94 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKG---------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD---- 94 (433)
T ss_pred eeeEEeecccceEeecCCCCeEEEeeccccccc---------ceeeeeeeeccCcccchhhhhhhhhhhhhceecC----
Confidence 344555555699999999999999976542210 01233334443 34688999932
Q ss_pred CCCCCcEEEEEeCCCcEEEEECCCcceee--------------------eeccccc--ccccceeeeeecccceeEEEEe
Q 021036 143 SSNPQVLLVTGSSDGSVRIWDGYIQELQK--------------------SAEAHCV--PFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 143 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--------------------~~~~~~~--~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
..+...++..+.|.+|++|.+....... .+..+.. ...+.+....+|..-|++++++
T Consensus 95 -~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 95 -DGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred -CCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 2344678888899999999987432211 0001110 1122223456788889999998
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec-----ccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-----HDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~ 274 (318)
.|+..++++. |-.|.+|+++...+.+. +.-.+. -..-|++..|+|. ...++-.+..|+|++.|++..
T Consensus 174 -----sD~Et~lSAD-dLRINLWnlei~d~sFn-IVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 174 -----SDKETFLSAD-DLRINLWNLEIIDQSFN-IVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred -----CccceEeecc-ceeeeeccccccCCcee-EEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 8888888876 89999998888777653 333333 3456889999996 557888889999999999864
Q ss_pred ceee-------eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 275 SLSQ-------VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 275 ~~~~-------~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+.. .+..+.. ..-+.+--..|..+.|++.|+||++=
T Consensus 247 aLCd~hsKlfEepedp~~-----rsffseiIsSISDvKFs~sGryilsR 290 (433)
T KOG1354|consen 247 ALCDAHSKLFEEPEDPSS-----RSFFSEIISSISDVKFSHSGRYILSR 290 (433)
T ss_pred hhhcchhhhhccccCCcc-----hhhHHHHhhhhhceEEccCCcEEEEe
Confidence 3321 1111111 11123344678999999999999873
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=2e-12 Score=103.93 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=117.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..+|++..|-.|++|+-.... ...++ ......|+|++|-|. .+.-|+.|+. +-|.+|..
T Consensus 111 ~~fava~nddvVriy~ksst~------------pt~Lk--s~sQrnvtclawRPl------saselavgCr-~gIciW~~ 169 (445)
T KOG2139|consen 111 IAFAVATNDDVVRIYDKSSTC------------PTKLK--SVSQRNVTCLAWRPL------SASELAVGCR-AGICIWSD 169 (445)
T ss_pred hhhhhhccCcEEEEeccCCCC------------Cceec--chhhcceeEEEeccC------Ccceeeeeec-ceeEEEEc
Confidence 788999999999999987632 11111 123567999999322 2345777765 56899987
Q ss_pred CCcceeee-ecc-cccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 165 YIQELQKS-AEA-HCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 165 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
...-.... +.. ...+.. -.......+|++++|. +||..+++++ .|..|.+||. .++...++.. ..
T Consensus 170 s~tln~~r~~~~~s~~~~q---vl~~pgh~pVtsmqwn-----~dgt~l~tAS~gsssi~iWdp--dtg~~~pL~~--~g 237 (445)
T KOG2139|consen 170 SRTLNANRNIRMMSTHHLQ---VLQDPGHNPVTSMQWN-----EDGTILVTASFGSSSIMIWDP--DTGQKIPLIP--KG 237 (445)
T ss_pred Ccccccccccccccccchh---heeCCCCceeeEEEEc-----CCCCEEeecccCcceEEEEcC--CCCCcccccc--cC
Confidence 53211111 000 000000 1111223589999999 9999999988 5778999954 4554335442 23
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC-CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG-NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.+.++-+.|||||.+|+++.-|+..++|+... -....-...+ +.|....|+|+|++|+-
T Consensus 238 lgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgs---------------grvqtacWspcGsfLLf 297 (445)
T KOG2139|consen 238 LGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGS---------------GRVQTACWSPCGSFLLF 297 (445)
T ss_pred CCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccC---------------CceeeeeecCCCCEEEE
Confidence 46688899999999999999999999996543 1122111111 37889999999987654
No 214
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.9e-12 Score=104.06 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=104.9
Q ss_pred ccceEEeeCCCceeEeecCCC---CCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCC
Q 021036 17 THPTVAASKSKGNSITKIPSN---CCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRS 93 (318)
Q Consensus 17 ~~~~~t~s~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~d 93 (318)
..-+++|+.|..+++|.++.. +..+.|......|+.. +.|++|+... .+|++|..+
T Consensus 68 ~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SN---IF~L~F~~~N------------------~~~~SG~~~ 126 (609)
T KOG4227|consen 68 DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSN---IFSLEFDLEN------------------RFLYSGERW 126 (609)
T ss_pred CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccc---eEEEEEccCC------------------eeEecCCCc
Confidence 455789999999999988762 2223344434344443 4446666555 999999999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
++|.+.|+++.+.+ .+..-....+.|+.+.. +|-.+.|++.+.++.|.+||.+..+....+
T Consensus 127 ~~VI~HDiEt~qsi------------~V~~~~~~~~~VY~m~~-------~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~ 187 (609)
T KOG4227|consen 127 GTVIKHDIETKQSI------------YVANENNNRGDVYHMDQ-------HPTDNTLIVVTRAKLVSFIDNRDRQNPISL 187 (609)
T ss_pred ceeEeeecccceee------------eeecccCcccceeeccc-------CCCCceEEEEecCceEEEEeccCCCCCCce
Confidence 99999999985421 11111223458999999 677789999999999999999865421111
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
... .-.....+.+.|+ |....+|++.+..+-+.+||..
T Consensus 188 ~~~-----------AN~~~~F~t~~F~----P~~P~Li~~~~~~~G~~~~D~R 225 (609)
T KOG4227|consen 188 VLP-----------ANSGKNFYTAEFH----PETPALILVNSETGGPNVFDRR 225 (609)
T ss_pred eee-----------cCCCccceeeeec----CCCceeEEeccccCCCCceeec
Confidence 000 0011245666777 4567899999999999999754
No 215
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=2.2e-13 Score=114.92 Aligned_cols=167 Identities=19% Similarity=0.281 Sum_probs=121.4
Q ss_pred EeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 121 IGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 121 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
.+.+.+|++-|+|+.| +.+|.+|++|+.|-.+.|||....+.++.+. ++|...|.++.|-
T Consensus 43 E~eL~GH~GCVN~LeW-------n~dG~lL~SGSDD~r~ivWd~~~~KllhsI~-------------TgHtaNIFsvKFv 102 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEW-------NADGELLASGSDDTRLIVWDPFEYKLLHSIS-------------TGHTANIFSVKFV 102 (758)
T ss_pred hhhhccccceecceee-------cCCCCEEeecCCcceEEeecchhcceeeeee-------------cccccceeEEeee
Confidence 3578899999999999 9999999999999999999998777776654 5677799999998
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCC------eeeEeeeeecccCceeEEEEcCCC-CEEEEecCCCcEEEEEecC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCN------KFDKVGSYNAHDQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~ 273 (318)
+. .+..++++|..|..|++||++...+ ..+....+..|...|-.++-.|++ +.+.++++||+++-+|++.
T Consensus 103 P~---tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 103 PY---TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cc---CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence 21 1357899999999999997763221 112344456788889999999988 6899999999999999986
Q ss_pred Ccee--eeecCCCCCCccccccCCCcceeeeEEEEcC-CCcEEEEE
Q 021036 274 NSLS--QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAMV 316 (318)
Q Consensus 274 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~~ 316 (318)
.... ....+.. ....-...-...++..+| +..+||+|
T Consensus 180 ph~c~p~~~~~~~------l~ny~~~lielk~ltisp~rp~~laVG 219 (758)
T KOG1310|consen 180 PHVCNPDEDCPSI------LVNYNPQLIELKCLTISPSRPYYLAVG 219 (758)
T ss_pred CccCCccccccHH------HHHhchhhheeeeeeecCCCCceEEec
Confidence 2221 1000000 000001123567899999 45567766
No 216
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=7.6e-12 Score=97.22 Aligned_cols=99 Identities=17% Similarity=0.193 Sum_probs=74.3
Q ss_pred ccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CCc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DNF 265 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~ 265 (318)
..+|.+++|+ |+|+.|++. ..+..|.+|| .+ . +++..+. ...+..+.|+|+|++|++++. .|.
T Consensus 59 ~~~I~~~~Ws-----P~g~~favi~g~~~~~v~lyd--~~-~--~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~ 126 (194)
T PF08662_consen 59 EGPIHDVAWS-----PNGNEFAVIYGSMPAKVTLYD--VK-G--KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD 126 (194)
T ss_pred CCceEEEEEC-----cCCCEEEEEEccCCcccEEEc--Cc-c--cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE
Confidence 3479999999 999887654 4677999995 43 2 2555553 456788999999999998864 467
Q ss_pred EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 266 VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|.+||+++.+......+. .+..++|+|||++++++.
T Consensus 127 l~~wd~~~~~~i~~~~~~----------------~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 127 LEFWDVRKKKKISTFEHS----------------DATDVEWSPDGRYLATAT 162 (194)
T ss_pred EEEEECCCCEEeeccccC----------------cEEEEEEcCCCCEEEEEE
Confidence 999999965554332222 468999999999999863
No 217
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=1e-11 Score=110.28 Aligned_cols=201 Identities=17% Similarity=0.181 Sum_probs=142.9
Q ss_pred CcccccccCCCCCccEEEEecCCCcEEEEEccC--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRSGKVSLWRICV--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
|...+++.+++|.++++|+|..||.|.+|.--. +. ....+.+..|.++|.+++| +.+|.
T Consensus 204 Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~------------~~t~t~lHWH~~~V~~L~f-------S~~G~ 264 (792)
T KOG1963|consen 204 HTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD------------SETCTLLHWHHDEVNSLSF-------SSDGA 264 (792)
T ss_pred hcccceeEEeccccceEEEeccCCcEEEEeccccccc------------cccceEEEecccccceeEE-------ecCCc
Confidence 445566677777779999999999999997543 22 2234567889999999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+|++|+..|.+.+|.+.+++ +.+-.. -.++|..+.++ ||+.+.+....|+.|.+-. +.
T Consensus 265 ~LlSGG~E~VLv~Wq~~T~~--kqfLPR-------------Lgs~I~~i~vS-----~ds~~~sl~~~DNqI~li~--~~ 322 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLETGK--KQFLPR-------------LGSPILHIVVS-----PDSDLYSLVLEDNQIHLIK--AS 322 (792)
T ss_pred eEeecccceEEEEEeecCCC--cccccc-------------cCCeeEEEEEc-----CCCCeEEEEecCceEEEEe--cc
Confidence 99999999999999999887 222211 13489999999 9999999999999999973 32
Q ss_pred CCee-eEeeeee--------cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee-eeecCCCCCCccccccCC-Cc
Q 021036 229 CNKF-DKVGSYN--------AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS-QVSIPTNTPGLQSCTDLP-DA 297 (318)
Q Consensus 229 ~~~~-~~~~~~~--------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~-~h 297 (318)
+... ..+..+. ...+-.+.++++|.-+.++-.+..|.|.+||+.+.... .+....... .+.. .+
T Consensus 323 dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~-----~~~~~n~ 397 (792)
T KOG1963|consen 323 DLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENY-----SDGDVNI 397 (792)
T ss_pred chhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecc-----cCCccee
Confidence 2110 0111111 12345677899997777888889999999999874433 221111100 0111 35
Q ss_pred ceeeeEEEEcCCCcEEEEEe
Q 021036 298 FVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~~~ 317 (318)
.-.++.++.+-.|.+++|+-
T Consensus 398 ~v~itav~~~~~gs~maT~E 417 (792)
T KOG1963|consen 398 QVGITAVARSRFGSWMATLE 417 (792)
T ss_pred EEeeeeehhhccceEEEEee
Confidence 56788888888899999874
No 218
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-11 Score=112.83 Aligned_cols=217 Identities=15% Similarity=0.135 Sum_probs=143.1
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
..+..++|||.||+|++||...-.... .. .+. .+.|+|.+ ..+.++.....++.+|.++.||
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~-~s-----~rS------~ltys~~~------sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEG-GS-----ARS------ELTYSPEG------SRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCc-ce-----eee------eEEEeccC------CceEEEEeccCCCeEEEEcCCC
Confidence 334567999999999999987632211 11 111 26777766 6677777777789999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeecccc-c-cEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN-S-WITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~-~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
.|++.+++..+... ......+....+. + .|..-+| ....+. .|+.+..-+.|..||++.....+
T Consensus 1121 ~v~~~~id~~~~~~-------~~~~~~ri~n~~~~g~vv~m~a~------~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w 1187 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSK-------RVATQVRIPNLKKDGVVVSMHAF------TAIVQSHVLVYATDLSRIVSWDTRMRHDAW 1187 (1431)
T ss_pred eEEEEEcccccccc-------ceeeeeecccccCCCceEEeecc------cccccceeEEEEEeccceEEecchhhhhHH
Confidence 99999997621100 0012222222222 2 2333333 122333 78888888999999999877666
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-cccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-AHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~ 250 (318)
.++... ..+.|++++.+ |.+..+++|+..|.+.+||+. -+. ++.++. .+..+|..+..
T Consensus 1188 ~lk~~~------------~hG~vTSi~id-----p~~~WlviGts~G~l~lWDLR--F~~--~i~sw~~P~~~~i~~v~~ 1246 (1431)
T KOG1240|consen 1188 RLKNQL------------RHGLVTSIVID-----PWCNWLVIGTSRGQLVLWDLR--FRV--PILSWEHPARAPIRHVWL 1246 (1431)
T ss_pred hhhcCc------------cccceeEEEec-----CCceEEEEecCCceEEEEEee--cCc--eeecccCcccCCcceEEe
Confidence 554332 23479999999 999999999999999999554 444 444443 24477888877
Q ss_pred cCC---CCEEEEec--CCCcEEEEEecCCceeeeecCC
Q 021036 251 AFD---GCCLYSCS--QDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 251 ~~~---~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+|- ....++++ ..+.|.+|++.++.....-+..
T Consensus 1247 ~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1247 CPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred eccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 774 24555444 5788999999988666554444
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=4.6e-11 Score=94.67 Aligned_cols=167 Identities=20% Similarity=0.190 Sum_probs=113.0
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQKS 172 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~ 172 (318)
..|.|||-.. .+.+.++. ...+|.++.+ .. +.|++.- .+.|.+|... +.+.+..
T Consensus 75 NkviIWDD~k--------------~~~i~el~-f~~~I~~V~l-------~r--~riVvvl-~~~I~VytF~~n~k~l~~ 129 (346)
T KOG2111|consen 75 NKVIIWDDLK--------------ERCIIELS-FNSEIKAVKL-------RR--DRIVVVL-ENKIYVYTFPDNPKLLHV 129 (346)
T ss_pred ceEEEEeccc--------------CcEEEEEE-eccceeeEEE-------cC--CeEEEEe-cCeEEEEEcCCChhheee
Confidence 4699999543 23444443 4678999999 44 3455554 5799999987 4566665
Q ss_pred ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 173 AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
+.....| ..+.+++-. .+..+||. |-.-|.|++-+ +...+..+.....+|...|.+++.+
T Consensus 130 ~et~~NP------------kGlC~~~~~-----~~k~~LafPg~k~GqvQi~d--L~~~~~~~p~~I~AH~s~Iacv~Ln 190 (346)
T KOG2111|consen 130 IETRSNP------------KGLCSLCPT-----SNKSLLAFPGFKTGQVQIVD--LASTKPNAPSIINAHDSDIACVALN 190 (346)
T ss_pred eecccCC------------CceEeecCC-----CCceEEEcCCCccceEEEEE--hhhcCcCCceEEEcccCceeEEEEc
Confidence 5543321 133333322 22333333 45779999984 4443322335678899999999999
Q ss_pred CCCCEEEEecCCCc-EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 252 FDGCCLYSCSQDNF-VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 252 ~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-+|.++||+|..|+ |||||..++.....-.... ....|++++|||++++||+.
T Consensus 191 ~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------------d~A~iy~iaFSp~~s~Lavs 244 (346)
T KOG2111|consen 191 LQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------------DRADIYCIAFSPNSSWLAVS 244 (346)
T ss_pred CCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------------chheEEEEEeCCCccEEEEE
Confidence 99999999999998 9999999887654322221 12589999999999999976
No 220
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=2.5e-11 Score=98.62 Aligned_cols=190 Identities=15% Similarity=0.148 Sum_probs=136.0
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC--CcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD--GSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d--~~v~iw 162 (318)
..|++|-.+|.+.+|..+.+... ...+..+..+ ..+..+.- +......+++|+.. ..+++|
T Consensus 116 g~Litc~~sG~l~~~~~k~~d~h----------ss~l~~la~g-~g~~~~r~------~~~~p~Iva~GGke~~n~lkiw 178 (412)
T KOG3881|consen 116 GTLITCVSSGNLQVRHDKSGDLH----------SSKLIKLATG-PGLYDVRQ------TDTDPYIVATGGKENINELKIW 178 (412)
T ss_pred CEEEEEecCCcEEEEeccCCccc----------cccceeeecC-Cceeeecc------CCCCCceEecCchhcccceeee
Confidence 57888899999999999865422 1222333333 44555655 23334567779888 899999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
|+++.+.+..-+ ..+-..+.-. -.-.++++.|- +. ...|++++.-+.+++| |.+.++ +++..+.-
T Consensus 179 dle~~~qiw~aK--NvpnD~L~Lr---VPvW~tdi~Fl-----~g~~~~~fat~T~~hqvR~Y--Dt~~qR-RPV~~fd~ 245 (412)
T KOG3881|consen 179 DLEQSKQIWSAK--NVPNDRLGLR---VPVWITDIRFL-----EGSPNYKFATITRYHQVRLY--DTRHQR-RPVAQFDF 245 (412)
T ss_pred ecccceeeeecc--CCCCccccce---eeeeeccceec-----CCCCCceEEEEecceeEEEe--cCcccC-cceeEecc
Confidence 999875444322 1111111100 01256677787 55 7899999999999999 565544 48888887
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
-+.+++++...|.++++++|..-|.+..||++++.+.... +.+..+.++++..+|.++++|++.
T Consensus 246 ~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~-------------~kg~tGsirsih~hp~~~~las~G 309 (412)
T KOG3881|consen 246 LENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG-------------LKGITGSIRSIHCHPTHPVLASCG 309 (412)
T ss_pred ccCcceeeeecCCCcEEEEecccchhheecccCceeeccc-------------cCCccCCcceEEEcCCCceEEeec
Confidence 8899999999999999999999999999999998876432 333456899999999999999975
No 221
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.46 E-value=9.6e-12 Score=114.13 Aligned_cols=197 Identities=13% Similarity=0.107 Sum_probs=128.6
Q ss_pred eeeccccc----CCCCcccccccCCCCCc-cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEE
Q 021036 60 VAWSPVLR----LSSKKYPVPQNGSSNWF-SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSI 134 (318)
Q Consensus 60 ~~w~p~~~----~~~~~~~v~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 134 (318)
.-|+|.|. +..|...|..++.+++. .++++|+.||+|++|+...-... ....+...++.....++.++
T Consensus 1032 ~gW~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~-------~~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE-------GGSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCCCccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC-------cceeeeeEEEeccCCceEEE
Confidence 45888775 55677789899888875 99999999999999999752210 00122333444456788888
Q ss_pred EeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc--ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EE
Q 021036 135 SLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LL 211 (318)
Q Consensus 135 ~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l 211 (318)
.. ..+++.++.++.||.|++.+++.. +.......... -....+..+...++.. ..+. .+
T Consensus 1105 t~-------~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~-------n~~~~g~vv~m~a~~~----~~~S~~l 1166 (1431)
T KOG1240|consen 1105 TM-------CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIP-------NLKKDGVVVSMHAFTA----IVQSHVL 1166 (1431)
T ss_pred Ee-------ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecc-------cccCCCceEEeecccc----cccceeE
Confidence 88 788999999999999999998862 11110000000 0000111233333331 2333 78
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+.+...+.|..||..+...-+.. ......+.|++++.+|.+.+++.|...|.+-+||++-+....-..++
T Consensus 1167 vy~T~~~~iv~~D~r~~~~~w~l--k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1167 VYATDLSRIVSWDTRMRHDAWRL--KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred EEEEeccceEEecchhhhhHHhh--hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCc
Confidence 88888999999954333222211 12224578999999999999999999999999999977665433333
No 222
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.45 E-value=1.5e-11 Score=104.75 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=137.3
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCC--------------CCCCCcE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSD--------------SSNPQVL 149 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~--------------~~~~~~~ 149 (318)
..++|....||.++||+...++..+ .......-++...+..|. .... .+.+...
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~-----------e~~p~~~~s~t~~~~~w~-L~~~~s~~k~~~~~~~~~~s~~t~~ 72 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQ-----------EFAPIASLSGTCTYTKWG-LSADYSPMKWLSLEKAKKASLDTSM 72 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeee-----------eeccchhccCcceeEEEE-EEeccchHHHHhHHHHhhccCCceE
Confidence 4799999999999999999865321 111111123344445553 1111 1234567
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
++-|...|.|.+|++..++.-..+.. ..|.+.|.++.++ .+-..|.+++.|+.+..| +...
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~~~st------------~~h~~~v~~~~~~-----~~~~ciyS~~ad~~v~~~--~~~~ 133 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITAKLST------------DKHYGNVNEILDA-----QRLGCIYSVGADLKVVYI--LEKE 133 (541)
T ss_pred EEeecCCccEEEEEecCCeEEEEEec------------CCCCCcceeeecc-----cccCceEecCCceeEEEE--eccc
Confidence 88899999999999999887766543 2356689999988 788899999999999999 5555
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.. .+..+++....+.+++.+|||..+++++ ++|++||+.+++... .+++|.++|++++|.-+
T Consensus 134 ~~--~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~--------------~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 134 KV--IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVI--------------TFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ce--eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEE--------------EecCCCcceEEEEEEEe
Confidence 55 5666777888899999999999999887 789999999987764 55667789999999887
Q ss_pred -----CcEEEEE
Q 021036 310 -----NLVVAMV 316 (318)
Q Consensus 310 -----~~~l~~~ 316 (318)
|.+++++
T Consensus 196 ~~g~~G~~vLss 207 (541)
T KOG4547|consen 196 IDGIIGKYVLSS 207 (541)
T ss_pred ccccccceeeec
Confidence 6776654
No 223
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.44 E-value=5.5e-12 Score=110.74 Aligned_cols=161 Identities=12% Similarity=0.025 Sum_probs=111.0
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcce
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQEL 169 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~ 169 (318)
+..|.+||....+ .+.+..|...+.+++| +|+|+.|+..+.+ ..|++||+.+++.
T Consensus 183 ~~~i~i~d~dg~~---------------~~~lt~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~i~i~dl~tg~~ 240 (429)
T PRK01742 183 PYEVRVADYDGFN---------------QFIVNRSSQPLMSPAW-------SPDGSKLAYVSFENKKSQLVVHDLRSGAR 240 (429)
T ss_pred eEEEEEECCCCCC---------------ceEeccCCCccccceE-------cCCCCEEEEEEecCCCcEEEEEeCCCCce
Confidence 4689999987532 2445667788999999 9999999887754 3699999987753
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
...... ......++|+ |||+.|+.+. .+|.+.||.++..++.. ..+..+...+...
T Consensus 241 ~~l~~~---------------~g~~~~~~wS-----PDG~~La~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~ 297 (429)
T PRK01742 241 KVVASF---------------RGHNGAPAFS-----PDGSRLAFASSKDGVLNIYVMGANGGTP---SQLTSGAGNNTEP 297 (429)
T ss_pred EEEecC---------------CCccCceeEC-----CCCCEEEEEEecCCcEEEEEEECCCCCe---EeeccCCCCcCCE
Confidence 322111 0122357888 9999887764 68888888777766653 3445566678889
Q ss_pred EEcCCCCEEEEec-CCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 249 AWAFDGCCLYSCS-QDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 249 ~~~~~~~~l~s~~-~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|+|||+.|+..+ .++...||++.. +....+ . +.. ...+|+|||++|+.+
T Consensus 298 ~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~--------------~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 298 SWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--G--------------GRG--YSAQISADGKTLVMI 350 (429)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--c--------------CCC--CCccCCCCCCEEEEE
Confidence 9999999776554 578888998754 222211 1 111 356899999988765
No 224
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=4.7e-12 Score=101.25 Aligned_cols=275 Identities=17% Similarity=0.178 Sum_probs=167.1
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCC-ceecchhcccccc---------ccceeeeeccccc-CCCCcccccccCC
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLP-LITADQYASRSAM---------LHSLAVAWSPVLR-LSSKKYPVPQNGS 80 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~---------~~~~~~~w~p~~~-~~~~~~~v~~~~~ 80 (318)
+++.+....+....|+++++|.+....... ............+ -....+...|... -.+|.+.|.++.+
T Consensus 93 ~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 93 LDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred cCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 455666778999999999999886533222 1100000000000 0011234444332 3359999999999
Q ss_pred CCCccEEEEecCCCcEEEEEccCCc-cccccccccCCceeEEeeecc-----ccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSGKVSLWRICVPK-CYSVEDCKVPTTAVLIGLFQA-----HNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+.++..++++ .|-.|.+|+++-.. +. .+..++. -..-|++..|+|. ....|+-++
T Consensus 173 NsD~Et~lSA-DdLRINLWnlei~d~sF------------nIVDIKP~nmEeLteVITsaEFhp~------~cn~f~YSS 233 (433)
T KOG1354|consen 173 NSDKETFLSA-DDLRINLWNLEIIDQSF------------NIVDIKPANMEELTEVITSAEFHPH------HCNVFVYSS 233 (433)
T ss_pred cCccceEeec-cceeeeeccccccCCce------------eEEEccccCHHHHHHHHhhhccCHh------HccEEEEec
Confidence 9999998876 57889999997422 11 1122222 2356888899443 345788888
Q ss_pred CCCcEEEEECCCccee----eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 155 SDGSVRIWDGYIQELQ----KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
..|+|++.|++...+. +.+.....|.+. .....--..|+.+.|+ ++|+++++-+ --+|++||+++..+
T Consensus 234 SKGtIrLcDmR~~aLCd~hsKlfEepedp~~r--sffseiIsSISDvKFs-----~sGryilsRD-yltvk~wD~nme~~ 305 (433)
T KOG1354|consen 234 SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR--SFFSEIISSISDVKFS-----HSGRYILSRD-YLTVKLWDLNMEAK 305 (433)
T ss_pred CCCcEEEeechhhhhhcchhhhhccccCCcch--hhHHHHhhhhhceEEc-----cCCcEEEEec-cceeEEEeccccCC
Confidence 8999999999954221 112111111110 1112223478899999 9999999875 46899998776665
Q ss_pred eeeEeeeeeccc------------Cce---eEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCC--------
Q 021036 231 KFDKVGSYNAHD------------QVV---TGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPG-------- 287 (318)
Q Consensus 231 ~~~~~~~~~~h~------------~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~-------- 287 (318)
++.++.-|. ..| ..++|+-++.+++||+.....++|++..+....+........
T Consensus 306 ---pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k 382 (433)
T KOG1354|consen 306 ---PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLK 382 (433)
T ss_pred ---cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeecccccccCCccccccc
Confidence 444554442 122 356899888899999999999999976555443332221111
Q ss_pred --cc--cc--------ccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 288 --LQ--SC--------TDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 288 --~~--~~--------~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+ +. .+...-...+...+|+|....||++
T Consensus 383 ~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~ia~a 423 (433)
T KOG1354|consen 383 LRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENSIAVA 423 (433)
T ss_pred ceeeecCCCccccccccchhhhhhHHHhhccCCccceeeee
Confidence 11 11 1111334567788999988888765
No 225
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.43 E-value=5.8e-14 Score=123.61 Aligned_cols=119 Identities=21% Similarity=0.309 Sum_probs=106.1
Q ss_pred EEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 120 LIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 120 ~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.++.+.+|...|+|+.| ...|.++++|+.|..++||.++++.++....+|. +.|+.++.
T Consensus 182 ~ikrLlgH~naVyca~f-------Drtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--------------~ditdlav 240 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIF-------DRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--------------GDITDLAV 240 (1113)
T ss_pred HHHHHHhhhhheeeeee-------ccccceEeecCccceeeeeeccchhhhccCCCCc--------------cccchhcc
Confidence 44567789999999999 8999999999999999999999998888776655 48899999
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+ .+..++++++.|..|++| .+.++. ++..+.+|++.|++++|+|.. +.+.||++++||.+
T Consensus 241 s-----~~n~~iaaaS~D~vIrvW--rl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 241 S-----SNNTMIAAASNDKVIRVW--RLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR 300 (1113)
T ss_pred c-----hhhhhhhhcccCceEEEE--ecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence 8 778899999999999999 777776 888899999999999999975 67899999999988
No 226
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.43 E-value=6.5e-12 Score=113.39 Aligned_cols=189 Identities=17% Similarity=0.235 Sum_probs=141.7
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..++.+..+..+.+||...+.....+... .+........+-.++. .-++++|+.-+.|.
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~---er~~l~~~~~~g~s~~------------------~~~i~~gsv~~~ii 158 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSD---ERCTLYSSLIIGDSAE------------------ELYIASGSVFGEII 158 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCC---ceEEEEeEEEEeccCc------------------EEEEEeccccccEE
Confidence 44667777778888888776655554331 1222122222233333 37899999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|+....+ .+. .+.+|.+.|.++.| +.+|+++++.|.|.++++|++++.+....
T Consensus 159 vW~~~~dn-------------~p~-~l~GHeG~iF~i~~-------s~dg~~i~s~SdDRsiRlW~i~s~~~~~~----- 212 (967)
T KOG0974|consen 159 VWKPHEDN-------------KPI-RLKGHEGSIFSIVT-------SLDGRYIASVSDDRSIRLWPIDSREVLGC----- 212 (967)
T ss_pred EEeccccC-------------Ccc-eecccCCceEEEEE-------ccCCcEEEEEecCcceeeeecccccccCc-----
Confidence 99998432 122 57899999999999 99999999999999999999998765541
Q ss_pred cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc-CceeEEEEcCCCCE
Q 021036 178 VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD-QVVTGLAWAFDGCC 256 (318)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~ 256 (318)
..-+|.+.+..+++. |+ .+++++.|.+.++|+++ ..+ +..+.+|. ..|..++..++...
T Consensus 213 --------~~fgHsaRvw~~~~~-----~n--~i~t~gedctcrvW~~~--~~~---l~~y~~h~g~~iw~~~~~~~~~~ 272 (967)
T KOG0974|consen 213 --------TGFGHSARVWACCFL-----PN--RIITVGEDCTCRVWGVN--GTQ---LEVYDEHSGKGIWKIAVPIGVII 272 (967)
T ss_pred --------ccccccceeEEEEec-----cc--eeEEeccceEEEEEecc--cce---ehhhhhhhhcceeEEEEcCCceE
Confidence 113466789999998 66 99999999999999543 333 33667776 46899999999999
Q ss_pred EEEecCCCcEEEEEecC
Q 021036 257 LYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~ 273 (318)
.+|++.|+.+++|++.+
T Consensus 273 ~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 273 KVTGGNDSTLKLWDLNG 289 (967)
T ss_pred EEeeccCcchhhhhhhc
Confidence 99999999999999875
No 227
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7.7e-11 Score=103.87 Aligned_cols=163 Identities=11% Similarity=0.038 Sum_probs=111.7
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---CCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---DGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~ 171 (318)
.|.++|.... ..+.+..|...+.+.+| +++|+.|+..+. +..|.+||+.+++...
T Consensus 183 ~l~~~d~dg~---------------~~~~lt~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~ 240 (435)
T PRK05137 183 RLAIMDQDGA---------------NVRYLTDGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL 240 (435)
T ss_pred EEEEECCCCC---------------CcEEEecCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE
Confidence 6778887543 23445667889999999 899998887764 4689999998876432
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW 250 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~ 250 (318)
... ....+....|+ |+|+.|+ +.+.++...+|-++..++.. ..+..+........|
T Consensus 241 l~~---------------~~g~~~~~~~S-----PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~Lt~~~~~~~~~~~ 297 (435)
T PRK05137 241 VGN---------------FPGMTFAPRFS-----PDGRKVVMSLSQGGNTDIYTMDLRSGTT---TRLTDSPAIDTSPSY 297 (435)
T ss_pred eec---------------CCCcccCcEEC-----CCCCEEEEEEecCCCceEEEEECCCCce---EEccCCCCccCceeE
Confidence 211 12245567888 9998765 55667775555557766653 334445556677899
Q ss_pred cCCCCEEEEecC-CC--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 251 AFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 251 ~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+|||+.|+..+. +| .|+++|+.++....+..... .+....|+|||++|+...
T Consensus 298 spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~---------------~~~~~~~SpdG~~ia~~~ 352 (435)
T PRK05137 298 SPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGG---------------RYSTPVWSPRGDLIAFTK 352 (435)
T ss_pred cCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCC---------------cccCeEECCCCCEEEEEE
Confidence 999998876653 33 68888887776665543321 346788999999988653
No 228
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.1e-11 Score=101.64 Aligned_cols=206 Identities=14% Similarity=0.061 Sum_probs=148.4
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCccccccc----CCCCCccEEEEecCC
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQN----GSSNWFSILAVGGRS 93 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~----~~s~~~~~l~~g~~d 93 (318)
...+....||.+||||...++..+.+.... ..-....+..|.-.. ........+. ..+.+...++-|...
T Consensus 6 ~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~----~~s~t~~~~~w~L~~--~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 6 DYFALSTGDGRLRIWDTAKNQLQQEFAPIA----SLSGTCTYTKWGLSA--DYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred heEeecCCCCeEEEEEccCceeeeeeccch----hccCcceeEEEEEEe--ccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 446778899999999999988766665322 111123346665211 0011111211 234455788889999
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
|.|.+|++..++. ...-+-..|.+.|+++.+ ..+-..|.+++.|+.+..|+...+......
T Consensus 80 g~v~~ys~~~g~i------------t~~~st~~h~~~v~~~~~-------~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~ 140 (541)
T KOG4547|consen 80 GSVLLYSVAGGEI------------TAKLSTDKHYGNVNEILD-------AQRLGCIYSVGADLKVVYILEKEKVIIRIW 140 (541)
T ss_pred ccEEEEEecCCeE------------EEEEecCCCCCcceeeec-------ccccCceEecCCceeEEEEecccceeeeee
Confidence 9999999998652 122222579999999999 777789999999999999999988777666
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
..... .+.+++++ |||..+++++ +.|++| +.++.+ .+.+|.+|.++|.+++|-..
T Consensus 141 ~~~~~--------------~~~sl~is-----~D~~~l~~as--~~ik~~--~~~~ke--vv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 141 KEQKP--------------LVSSLCIS-----PDGKILLTAS--RQIKVL--DIETKE--VVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ccCCC--------------ccceEEEc-----CCCCEEEecc--ceEEEE--EccCce--EEEEecCCCcceEEEEEEEe
Confidence 55443 68899999 9999999985 689999 666776 78899999999999999876
Q ss_pred -----CCEEEEe-cCCCcEEEEEecC
Q 021036 254 -----GCCLYSC-SQDNFVRSWIFHG 273 (318)
Q Consensus 254 -----~~~l~s~-~~d~~v~iwd~~~ 273 (318)
|.+++++ ..+..+.+|-+..
T Consensus 196 ~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 196 IDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeeeccccccceeEEEEEc
Confidence 6665544 5566688887654
No 229
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.1e-10 Score=102.61 Aligned_cols=185 Identities=12% Similarity=0.043 Sum_probs=119.6
Q ss_pred CcccccccCCCCCccEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 71 KKYPVPQNGSSNWFSILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+...+....++++|++|+....+ ..|++|++.+++. ..+..+...+.+++| +++|
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---------------~~~~~~~~~~~~~~~-------spDg 245 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---------------EKVASFPGMNGAPAF-------SPDG 245 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---------------EEeecCCCCccceEE-------CCCC
Confidence 44457788899999998887643 4799999987541 122334455677899 8898
Q ss_pred cEEE-EEeCCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 148 VLLV-TGSSDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 148 ~~l~-s~~~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
+.|+ +.+.++ .|.+||+.+++...... + ........|+ |+|+.|+..+ .++...+|
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~-~--------------~~~~~~~~~s-----~dg~~l~~~s~~~g~~~iy 305 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLTRLTN-G--------------PGIDTEPSWS-----PDGKSIAFTSDRGGSPQIY 305 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEEECCC-C--------------CCCCCCEEEC-----CCCCEEEEEECCCCCceEE
Confidence 8665 444444 58888988765432211 1 1123345787 8998776655 44554555
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC---cEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN---FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
.++..+++.. .+..+...+..+.|+|+|++++.++.++ .|.+||+.++....+.... .
T Consensus 306 ~~d~~~~~~~---~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~----------------~ 366 (417)
T TIGR02800 306 MMDADGGEVR---RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG----------------L 366 (417)
T ss_pred EEECCCCCEE---EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC----------------C
Confidence 4466665532 3333455667889999999988887775 7888998775544332111 1
Q ss_pred eeEEEEcCCCcEEEEE
Q 021036 301 CLGMAVSPGNLVVAMV 316 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~ 316 (318)
....+|+|||++|+..
T Consensus 367 ~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 367 DESPSFAPNGRMILYA 382 (417)
T ss_pred CCCceECCCCCEEEEE
Confidence 2356899999887764
No 230
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=8.7e-11 Score=93.11 Aligned_cols=105 Identities=14% Similarity=0.177 Sum_probs=82.1
Q ss_pred EEEEE-eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-EEEeeec
Q 021036 149 LLVTG-SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-FDLWKCD 226 (318)
Q Consensus 149 ~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-i~vw~~~ 226 (318)
+|+.= -.-|.|.|-|+...+.-. .....+|...|.+++++ .+|.++|+++..|+ |++| |
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~------------p~~I~AH~s~Iacv~Ln-----~~Gt~vATaStkGTLIRIF--d 210 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNA------------PSIINAHDSDIACVALN-----LQGTLVATASTKGTLIRIF--D 210 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCC------------ceEEEcccCceeEEEEc-----CCccEEEEeccCcEEEEEE--E
Confidence 44433 345899999988654420 02335667799999999 89999999999998 7899 6
Q ss_pred cCCCeeeEeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 227 ISCNKFDKVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 227 ~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
..+++ ++.+++. ....|++++|||++.+||++|+.|+|.||.++..
T Consensus 211 t~~g~--~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 211 TEDGT--LLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCc--EeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 77776 6666653 3467999999999999999999999999999763
No 231
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.1e-10 Score=100.71 Aligned_cols=161 Identities=12% Similarity=0.017 Sum_probs=98.6
Q ss_pred cEEEE-ecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEE
Q 021036 85 SILAV-GGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVR 160 (318)
Q Consensus 85 ~~l~~-g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~ 160 (318)
+.|+. .+.+| .|.+||+++++. +.+..+...+....| +++|+.|+..+.+ +...
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~---------------~~lt~~~~~~~~~~w-------SPDG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQI---------------RQVTDGRSNNTEPTW-------FPDSQNLAYTSDQAGRPQ 312 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCE---------------EEccCCCCCcCceEE-------CCCCCEEEEEeCCCCCce
Confidence 76664 45555 488889887542 223334456788999 8999988776654 4444
Q ss_pred EE--ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC-CC--cEEEeeeccCCCeeeEe
Q 021036 161 IW--DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG-SG--SFDLWKCDISCNKFDKV 235 (318)
Q Consensus 161 iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~-dg--~i~vw~~~~~~~~~~~~ 235 (318)
+| |+.+++... +.. .........|+ |+|+.++..+. ++ .|.+| +..++..+.+
T Consensus 313 Iy~~d~~~g~~~~-lt~--------------~~~~~~~~~~S-----pDG~~Ia~~~~~~g~~~I~~~--dl~~g~~~~L 370 (429)
T PRK03629 313 VYKVNINGGAPQR-ITW--------------EGSQNQDADVS-----SDGKFMVMVSSNGGQQHIAKQ--DLATGGVQVL 370 (429)
T ss_pred EEEEECCCCCeEE-eec--------------CCCCccCEEEC-----CCCCEEEEEEccCCCceEEEE--ECCCCCeEEe
Confidence 55 665553322 211 11134467788 99998877654 33 35566 6666654333
Q ss_pred eeeecccCceeEEEEcCCCCEEEEecCCCc---EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 236 GSYNAHDQVVTGLAWAFDGCCLYSCSQDNF---VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 236 ~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
. . ........|+|||++|+.++.++. +.++++.++....+..++ +.+...+|+|
T Consensus 371 t---~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~---------------~~~~~p~Wsp 427 (429)
T PRK03629 371 T---D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATD---------------GQVKFPAWSP 427 (429)
T ss_pred C---C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCC---------------CCcCCcccCC
Confidence 2 1 122346789999999998887764 677777665555544322 3567788887
No 232
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=2.9e-10 Score=99.80 Aligned_cols=149 Identities=15% Similarity=0.086 Sum_probs=100.4
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+.+.+| +|+|+.|+..+.+ ..|.+||+.+++....... ........|
T Consensus 190 ~l~~~~~~v~~p~w-------SPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~---------------~g~~~~~~~ 247 (427)
T PRK02889 190 SALSSPEPIISPAW-------SPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANF---------------KGSNSAPAW 247 (427)
T ss_pred EeccCCCCcccceE-------cCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecC---------------CCCccceEE
Confidence 34466778999999 8999988877643 3599999988765332111 113456788
Q ss_pred eeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CCcEEEEEec--CCc
Q 021036 200 ILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFH--GNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~--~~~ 275 (318)
+ |||+.|+ +.+.+|...+|.++..++.. ..+..+........|+|||+.|+..+. ++...||.+. ++.
T Consensus 248 S-----PDG~~la~~~~~~g~~~Iy~~d~~~~~~---~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 248 S-----PDGRTLAVALSRDGNSQIYTVNADGSGL---RRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred C-----CCCCEEEEEEccCCCceEEEEECCCCCc---EECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 8 9998776 56788888888777766543 334445555667889999998776554 4666677653 444
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 320 ~~~lt~~g~---------------~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 320 AQRVTFTGS---------------YNTSPRISPDGKLLAYI 345 (427)
T ss_pred eEEEecCCC---------------CcCceEECCCCCEEEEE
Confidence 443332221 22467899999998864
No 233
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.33 E-value=1.5e-10 Score=98.67 Aligned_cols=183 Identities=17% Similarity=0.224 Sum_probs=126.6
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+++. +....|+-++++.|. .+..+....+.++++.. ++...+|++|+.+|.|.+||.
T Consensus 147 Dly~~-gsg~evYRlNLEqGr--------------fL~P~~~~~~~lN~v~i-------n~~hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 147 DLYLV-GSGSEVYRLNLEQGR--------------FLNPFETDSGELNVVSI-------NEEHGLLACGTEDGVVEFWDP 204 (703)
T ss_pred cEEEe-ecCcceEEEEccccc--------------cccccccccccceeeee-------cCccceEEecccCceEEEecc
Confidence 34444 444568888888854 55667767789999999 677779999999999999999
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
+..+.+..+...... ...........|+++.|+ .+|-.+++|..+|.|.+| |++..++..+ .-.+..-+
T Consensus 205 R~ksrv~~l~~~~~v---~s~pg~~~~~svTal~F~-----d~gL~~aVGts~G~v~iy--DLRa~~pl~~-kdh~~e~p 273 (703)
T KOG2321|consen 205 RDKSRVGTLDAASSV---NSHPGGDAAPSVTALKFR-----DDGLHVAVGTSTGSVLIY--DLRASKPLLV-KDHGYELP 273 (703)
T ss_pred hhhhhheeeeccccc---CCCccccccCcceEEEec-----CCceeEEeeccCCcEEEE--EcccCCceee-cccCCccc
Confidence 987776665543210 000001122358999998 779999999999999999 5555553222 22334568
Q ss_pred eeEEEEcCC--CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 245 VTGLAWAFD--GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 245 v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
|..+.|.+. +..+++. ....++|||-.+++........ ..++.+++-|++-++.++
T Consensus 274 i~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt---------------~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPT---------------SDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred eeeecccccCCCceEEec-chHHhhhcccccCCceeecccc---------------CCcCceeeecCCceEEEe
Confidence 889999775 4455554 4568999999887766433322 257888888887777765
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.31 E-value=3e-10 Score=90.62 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=137.3
Q ss_pred cCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe
Q 021036 11 KMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG 90 (318)
Q Consensus 11 ~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g 90 (318)
+++....+.+..++.|+.|.+|++...+..-.+...+.+ ...+.|+|++ ..+|.+.
T Consensus 55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag-------ls~~~WSPdg-----------------rhiL~ts 110 (447)
T KOG4497|consen 55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG-------LSSISWSPDG-----------------RHILLTS 110 (447)
T ss_pred eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCc-------ceeeeECCCc-----------------ceEeeee
Confidence 344455677888999999999999887765555542211 2348999998 3677888
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC---Cc
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY---IQ 167 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~---~~ 167 (318)
..|-.|.+|.+.+..+. .++--...+..++| .++|++.+.+++-...-...+. .-
T Consensus 111 eF~lriTVWSL~t~~~~---------------~~~~pK~~~kg~~f-------~~dg~f~ai~sRrDCkdyv~i~~c~~W 168 (447)
T KOG4497|consen 111 EFDLRITVWSLNTQKGY---------------LLPHPKTNVKGYAF-------HPDGQFCAILSRRDCKDYVQISSCKAW 168 (447)
T ss_pred cceeEEEEEEeccceeE---------------EecccccCceeEEE-------CCCCceeeeeecccHHHHHHHHhhHHH
Confidence 88999999999986532 12222334566777 6777766665532110000000 00
Q ss_pred ceeeeecc-----cccccccce------------e-eeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee---ec
Q 021036 168 ELQKSAEA-----HCVPFSLLK------------E-VVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK---CD 226 (318)
Q Consensus 168 ~~~~~~~~-----~~~~~~~~~------------~-~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~---~~ 226 (318)
..++.+.. ....+.+.. . ....-.-.+..+.|+ |.+++|++|+.|+.+++-+ +.
T Consensus 169 ~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ws-----P~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 169 ILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWS-----PCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred HHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEec-----cccceEEeeccchhhhhhceeeee
Confidence 00000000 000000000 0 011223467788888 9999999999999998765 00
Q ss_pred ----------------------------------------cCCCe-------------eeEeeeee------cccCceeE
Q 021036 227 ----------------------------------------ISCNK-------------FDKVGSYN------AHDQVVTG 247 (318)
Q Consensus 227 ----------------------------------------~~~~~-------------~~~~~~~~------~h~~~v~~ 247 (318)
...+. +..+..++ .....+--
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 00000 00001111 11234556
Q ss_pred EEEcCCCCEEEEecCC--CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 248 LAWAFDGCCLYSCSQD--NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
++|++|..+++|-... ..+-+||++.-++..+..... +|....|+|....|+.
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~---------------piraf~WdP~~prL~v 378 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH---------------PIRAFEWDPGRPRLVV 378 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc---------------ceeEEEeCCCCceEEE
Confidence 8999999999887544 679999998866654443332 6677777775554443
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.31 E-value=1.5e-10 Score=92.77 Aligned_cols=209 Identities=18% Similarity=0.195 Sum_probs=150.6
Q ss_pred ceEEeeCCCceeEe-ecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 19 PTVAASKSKGNSIT-KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
-+++.|.|.++|+| +...++..+.+.. ..+. ...++.+++.. ..|++|-..|++.
T Consensus 38 gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~-----~~~~~~y~~e~------------------~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 38 GVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPS-----PCSAMEYVSES------------------RRLYVGQDNGTVT 93 (404)
T ss_pred CeEEccccceeeeEEeccccccCchhhh-hCCC-----CceEeeeeccc------------------eEEEEEEecceEE
Confidence 36899999999999 5666777666643 1111 13346677766 8999999999999
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeec---
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAE--- 174 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--- 174 (318)
-+.+...-. .....+.+..|..+|..+-| +...+++++.+.|..+.---.+.+..+....
T Consensus 94 efs~sedfn----------km~~~r~~~~h~~~v~~~if-------~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~ 156 (404)
T KOG1409|consen 94 EFALSEDFN----------KMTFLKDYLAHQARVSAIVF-------SLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET 156 (404)
T ss_pred EEEhhhhhh----------hcchhhhhhhhhcceeeEEe-------cCCceeEEEeccccceEEEeeccCCcccceEeec
Confidence 888764210 02355677889999999999 7778889999988776655555443322110
Q ss_pred ---------------ccccccccce---------eeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 175 ---------------AHCVPFSLLK---------EVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 175 ---------------~~~~~~~~~~---------~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
.+...+..++ ....+|...+.+++|. +...+|++|..|..+.+||+-.+.+
T Consensus 157 ~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd-----~~~~~LfSg~~d~~vi~wdigg~~g 231 (404)
T KOG1409|consen 157 PASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD-----PGQRLLFSGASDHSVIMWDIGGRKG 231 (404)
T ss_pred cCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc-----CCCcEEEeccccCceEEEeccCCcc
Confidence 0111111111 2345788899999999 8999999999999999997765555
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
...++.+|...|..+..-+.-+.+.+++.||.|.+|+++....
T Consensus 232 ---~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 232 ---TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred ---eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 3566788999999998887778899999999999999975433
No 236
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.30 E-value=3.7e-10 Score=88.70 Aligned_cols=188 Identities=16% Similarity=0.075 Sum_probs=125.0
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.++++++.+..++++..+|.+.+-+..... .+.++.++.|..+++...| +..+.+++.+|+.
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~------------le~vq~wk~He~E~Wta~f------~~~~pnlvytGgD 186 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMV------------LEKVQTWKVHEFEAWTAKF------SDKEPNLVYTGGD 186 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceee------------eeecccccccceeeeeeec------ccCCCceEEecCC
Confidence 344555555889999999999966665533 3455688999999999999 4556689999999
Q ss_pred CCcEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC-Ceee
Q 021036 156 DGSVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC-NKFD 233 (318)
Q Consensus 156 d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~ 233 (318)
|+.+..||++.. +.+.. -...|...|.+|.-+ ||.+.++++|+.|-.|++| |.|. ++
T Consensus 187 D~~l~~~D~R~p~~~i~~-------------n~kvH~~GV~SI~ss----~~~~~~I~TGsYDe~i~~~--DtRnm~k-- 245 (339)
T KOG0280|consen 187 DGSLSCWDIRIPKTFIWH-------------NSKVHTSGVVSIYSS----PPKPTYIATGSYDECIRVL--DTRNMGK-- 245 (339)
T ss_pred CceEEEEEecCCcceeee-------------cceeeecceEEEecC----CCCCceEEEeccccceeee--ehhcccC--
Confidence 999999999933 22221 113455688888888 5889999999999999999 5553 33
Q ss_pred EeeeeecccCceeEEEEcCC--CCEEEEecCCCcEEEEEecCCcee---eeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 234 KVGSYNAHDQVVTGLAWAFD--GCCLYSCSQDNFVRSWIFHGNSLS---QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~--~~~l~s~~~d~~v~iwd~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
++..-. -.+.|+.+.++|. +..|+++ .-.-.+|-+...+... .+... ..|.+-+++-.|..
T Consensus 246 Pl~~~~-v~GGVWRi~~~p~~~~~lL~~C-Mh~G~ki~~~~~~~~e~~~~~~s~------------~~hdSl~YG~DWd~ 311 (339)
T KOG0280|consen 246 PLFKAK-VGGGVWRIKHHPEIFHRLLAAC-MHNGAKILDSSDKVLEFQIVLPSD------------KIHDSLCYGGDWDS 311 (339)
T ss_pred ccccCc-cccceEEEEecchhhhHHHHHH-HhcCceEEEecccccchheeeecc------------ccccceeecccccc
Confidence 443322 3478999999995 3344444 4444667776654333 11111 22444556666644
Q ss_pred CCcEEEEE
Q 021036 309 GNLVVAMV 316 (318)
Q Consensus 309 ~~~~l~~~ 316 (318)
...+|||+
T Consensus 312 ~~~~lATC 319 (339)
T KOG0280|consen 312 KDSFLATC 319 (339)
T ss_pred ccceeeee
Confidence 44456654
No 237
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.29 E-value=1.4e-11 Score=102.13 Aligned_cols=188 Identities=15% Similarity=0.204 Sum_probs=133.9
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+|..++|-|..-+|++++..|-++.-|+.+|+ .+..+..-.+.+..++- +|-...+-+
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk--------------lVa~~~t~~G~~~vm~q-------NP~NaVih~ 268 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK--------------LVASIRTGAGRTDVMKQ-------NPYNAVIHL 268 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhh--------------hhHHHHccCCccchhhc-------CCccceEEE
Confidence 356666666666899999999999999999954 55667666788888888 666668889
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
|...|+|.+|.....+.+..+..| .++|+++++. ++|.+++|.+.|..++|| |++...
T Consensus 269 GhsnGtVSlWSP~skePLvKiLcH--------------~g~V~siAv~-----~~G~YMaTtG~Dr~~kIW--DlR~~~- 326 (545)
T KOG1272|consen 269 GHSNGTVSLWSPNSKEPLVKILCH--------------RGPVSSIAVD-----RGGRYMATTGLDRKVKIW--DLRNFY- 326 (545)
T ss_pred cCCCceEEecCCCCcchHHHHHhc--------------CCCcceEEEC-----CCCcEEeecccccceeEe--eecccc-
Confidence 999999999999887776665544 4599999999 999999999999999999 455543
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec-CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH-GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
.+.++.. ..+...+++|..| ++..+....|.||.=. .+. .+...+++.- ...++|.++.|+|-..
T Consensus 327 -ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s-----~~~~~pYm~H-----~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 327 -QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGS-----GHGETPYMNH-----RCGGPVEDLRFCPYED 392 (545)
T ss_pred -ccceeec-CCCcccccccccc--ceeeecCCeeeeehhhhcCC-----CCCCcchhhh-----ccCcccccceeccHHH
Confidence 3444433 3456778888666 5556666789999532 111 0111111110 0123788888888777
Q ss_pred EEEEEe
Q 021036 312 VVAMVQ 317 (318)
Q Consensus 312 ~l~~~~ 317 (318)
.|..||
T Consensus 393 vLGIGH 398 (545)
T KOG1272|consen 393 VLGIGH 398 (545)
T ss_pred eeeccc
Confidence 777665
No 238
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.28 E-value=6e-11 Score=94.53 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=134.7
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
-++...+..+.|-|.++-+..+.+.+ -+.+.. +.|..+. ...|.....|+.|.+|
T Consensus 22 yiAs~~~yrlviRd~~tlq~~qlf~c-----ldki~y---ieW~ads-----------------~~ilC~~yk~~~vqvw 76 (447)
T KOG4497|consen 22 YIASLSRYRLVIRDSETLQLHQLFLC-----LDKIVY---IEWKADS-----------------CHILCVAYKDPKVQVW 76 (447)
T ss_pred eeeeeeeeEEEEeccchhhHHHHHHH-----HHHhhh---eeeeccc-----------------eeeeeeeeccceEEEE
Confidence 34444555788889888776665554 222222 8888776 2455666889999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
++..++ -...+....+++.+++| +|+|+ +|.+..-|-+|.+|.+.+.+....-..
T Consensus 77 sl~Qpe--------------w~ckIdeg~agls~~~W-------SPdgrhiL~tseF~lriTVWSL~t~~~~~~~~p--- 132 (447)
T KOG4497|consen 77 SLVQPE--------------WYCKIDEGQAGLSSISW-------SPDGRHILLTSEFDLRITVWSLNTQKGYLLPHP--- 132 (447)
T ss_pred Eeecce--------------eEEEeccCCCcceeeeE-------CCCcceEeeeecceeEEEEEEeccceeEEeccc---
Confidence 999855 34566777889999999 89995 555666789999999988765443221
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC-CCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS-CNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+..+..++|+ |+|++.+..+.-.....+ .+. ...++.+.+++-.+-..+.+.|+|||..|
T Consensus 133 ------------K~~~kg~~f~-----~dg~f~ai~sRrDCkdyv--~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~l 193 (447)
T KOG4497|consen 133 ------------KTNVKGYAFH-----PDGQFCAILSRRDCKDYV--QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWL 193 (447)
T ss_pred ------------ccCceeEEEC-----CCCceeeeeecccHHHHH--HHHhhHHHHHHHhcCCCcccccCceECCCCcEE
Confidence 2256788998 999999888743222222 111 22334555566566678899999999887
Q ss_pred EEecC--CCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 258 YSCSQ--DNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 258 ~s~~~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
+.-.. +..|..|.. +-.+..++|+|.+++|+.|.
T Consensus 194 aVwd~~Leykv~aYe~--------------------------~lG~k~v~wsP~~qflavGs 229 (447)
T KOG4497|consen 194 AVWDNVLEYKVYAYER--------------------------GLGLKFVEWSPCNQFLAVGS 229 (447)
T ss_pred EEecchhhheeeeeee--------------------------ccceeEEEeccccceEEeec
Confidence 64321 122222211 12567888888888888874
No 239
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.6e-09 Score=95.54 Aligned_cols=171 Identities=12% Similarity=0.065 Sum_probs=103.1
Q ss_pred cEEEEecCC---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE-EEeCCC--c
Q 021036 85 SILAVGGRS---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV-TGSSDG--S 158 (318)
Q Consensus 85 ~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~-s~~~d~--~ 158 (318)
+.|+..+.+ ..|.+|++.+++. +.+. ...+.+....| +|+|+.|+ +.+.++ .
T Consensus 211 ~~la~~s~~~~~~~l~~~~l~~g~~------------~~l~---~~~g~~~~~~~-------SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 211 KRIAYVSFEQKRPRIFVQNLDTGRR------------EQIT---NFEGLNGAPAW-------SPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred CEEEEEEcCCCCCEEEEEECCCCCE------------EEcc---CCCCCcCCeEE-------CCCCCEEEEEEccCCCce
Confidence 777655433 3588899987652 2222 22334556899 89998776 444555 5
Q ss_pred EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeee
Q 021036 159 VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGS 237 (318)
Q Consensus 159 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~ 237 (318)
|.+||+.+++... +..+ ........|+ |+|+.++..+ .+|...+|.++..+++.+.+.
T Consensus 269 Iy~~d~~~~~~~~-lt~~--------------~~~~~~~~~s-----pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt- 327 (430)
T PRK00178 269 IYVMDLASRQLSR-VTNH--------------PAIDTEPFWG-----KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT- 327 (430)
T ss_pred EEEEECCCCCeEE-cccC--------------CCCcCCeEEC-----CCCCEEEEEECCCCCceEEEEECCCCCEEEee-
Confidence 8888988765432 2211 1133456788 8988766554 455555555566666543332
Q ss_pred eecccCceeEEEEcCCCCEEEEecCC-C--cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 238 YNAHDQVVTGLAWAFDGCCLYSCSQD-N--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 238 ~~~h~~~v~~~~~~~~~~~l~s~~~d-~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+. ........|+|+|++|+..+.+ + .|.+||+.++....+.... ......|+|||++|+
T Consensus 328 ~~--~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~----------------~~~~p~~spdg~~i~ 389 (430)
T PRK00178 328 FV--GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS----------------LDESPSVAPNGTMLI 389 (430)
T ss_pred cC--CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC----------------CCCCceECCCCCEEE
Confidence 22 2233457899999988766543 3 5888898887655443211 112458999998887
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
..
T Consensus 390 ~~ 391 (430)
T PRK00178 390 YA 391 (430)
T ss_pred EE
Confidence 54
No 240
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.27 E-value=6.2e-11 Score=98.94 Aligned_cols=246 Identities=14% Similarity=0.073 Sum_probs=152.9
Q ss_pred eccCcCCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccE
Q 021036 7 FTSNKMKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSI 86 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~ 86 (318)
|++--+..++-.++++++.||.+|+=.+....+...... -..|.+.+.. ++-.|.. ..-
T Consensus 189 fQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~r-l~~h~g~vhk---lav~p~s-----------------p~~ 247 (559)
T KOG1334|consen 189 FQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKR-LAPHEGPVHK---LAVEPDS-----------------PKP 247 (559)
T ss_pred hhhhccCCCCCcCceeccccCceeeeeeccccceeccee-cccccCccce---eeecCCC-----------------CCc
Confidence 444445666778889999999999986654333221111 1223433222 3333433 477
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccc---cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNS---WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
|.+++.|+.+.-.|+..+... ..+..-..+.. ..+.++.. +.+..++++++.|..+++||
T Consensus 248 f~S~geD~~v~~~Dlr~~~pa-----------~~~~cr~~~~~~~v~L~~Ia~~------P~nt~~faVgG~dqf~RvYD 310 (559)
T KOG1334|consen 248 FLSCGEDAVVFHIDLRQDVPA-----------EKFVCREADEKERVGLYTIAVD------PRNTNEFAVGGSDQFARVYD 310 (559)
T ss_pred ccccccccceeeeeeccCCcc-----------ceeeeeccCCccceeeeeEecC------CCCccccccCChhhhhhhhc
Confidence 899999999999999875421 11222223333 46778873 33445799999999999999
Q ss_pred CCCccee------eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC------e
Q 021036 164 GYIQELQ------KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN------K 231 (318)
Q Consensus 164 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~------~ 231 (318)
.+.-... ..+..+ .........|++++|+ .++.-|+++-.|-.|++|.-++..+ .
T Consensus 311 ~R~~~~e~~n~~~~~f~p~--------hl~~d~~v~ITgl~Ys-----h~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s 377 (559)
T KOG1334|consen 311 QRRIDKEENNGVLDKFCPH--------HLVEDDPVNITGLVYS-----HDGSELLASYNDEDIYLFNKSMGDGSEPDPSS 377 (559)
T ss_pred ccchhhccccchhhhcCCc--------cccccCcccceeEEec-----CCccceeeeecccceEEeccccccCCCCCCCc
Confidence 8854322 222111 1112334578999998 7877777777799999995444333 0
Q ss_pred --eeEee-eeecccC--ceeEEE-EcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 232 --FDKVG-SYNAHDQ--VVTGLA-WAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 232 --~~~~~-~~~~h~~--~v~~~~-~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
-..+. .+++|.. .|-++- |-|...|+++|+.-|.|+||+-.++++..+..... | .|+|+.
T Consensus 378 ~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr------------~--VVNCLE 443 (559)
T KOG1334|consen 378 PREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDR------------H--VVNCLE 443 (559)
T ss_pred chhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhccc------------c--eEeccC
Confidence 01222 2778864 455665 45788899999999999999998877764432221 1 556666
Q ss_pred EcCCCcEEEEEe
Q 021036 306 VSPGNLVVAMVQ 317 (318)
Q Consensus 306 ~sp~~~~l~~~~ 317 (318)
=+|--..||+..
T Consensus 444 pHP~~PvLAsSG 455 (559)
T KOG1334|consen 444 PHPHLPVLASSG 455 (559)
T ss_pred CCCCCchhhccC
Confidence 666555555543
No 241
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=1.5e-09 Score=95.65 Aligned_cols=185 Identities=14% Similarity=0.085 Sum_probs=112.5
Q ss_pred CcccccccCCCCCccEEEEecC-CC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 71 KKYPVPQNGSSNWFSILAVGGR-SG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l~~g~~-dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+...+....++|+|+.|+..+. ++ .|.+||+.+++ .+.+..+.+ ......| +++|
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~------------~~~lt~~~g---~~~~~~w-------SPDG 273 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV------------REKVTSFPG---INGAPRF-------SPDG 273 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC------------eEEecCCCC---CcCCeeE-------CCCC
Confidence 3446678899999998877643 33 57888887754 223333322 3346789 8999
Q ss_pred cEEEE-EeCCCc--EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 148 VLLVT-GSSDGS--VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 148 ~~l~s-~~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
+.|+. .+.++. |.++|+.+++... +..+ .......+|+ |+|+.++..+ .++...+|
T Consensus 274 ~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~--------------~~~~~~p~wS-----pDG~~I~f~s~~~g~~~Iy 333 (448)
T PRK04792 274 KKLALVLSKDGQPEIYVVDIATKALTR-ITRH--------------RAIDTEPSWH-----PDGKSLIFTSERGGKPQIY 333 (448)
T ss_pred CEEEEEEeCCCCeEEEEEECCCCCeEE-CccC--------------CCCccceEEC-----CCCCEEEEEECCCCCceEE
Confidence 87765 556664 7777887765432 2111 1134566888 8998776554 45666777
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeeecCCCCCCccccccCCCccee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVS 300 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 300 (318)
.++..+++.+.+. +.+ ......+|+|+|++|+..+. ++ .|.++|+.++....+.... .
T Consensus 334 ~~dl~~g~~~~Lt-~~g--~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~----------------~ 394 (448)
T PRK04792 334 RVNLASGKVSRLT-FEG--EQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTR----------------L 394 (448)
T ss_pred EEECCCCCEEEEe-cCC--CCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCC----------------C
Confidence 6677766543332 222 22345789999998876654 34 4555677776554332111 1
Q ss_pred eeEEEEcCCCcEEEEE
Q 021036 301 CLGMAVSPGNLVVAMV 316 (318)
Q Consensus 301 v~~v~~sp~~~~l~~~ 316 (318)
....+|+|||++|+..
T Consensus 395 d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 395 DESPSVAPNGTMVIYS 410 (448)
T ss_pred CCCceECCCCCEEEEE
Confidence 1244789998887653
No 242
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.23 E-value=1e-09 Score=93.62 Aligned_cols=202 Identities=15% Similarity=0.092 Sum_probs=129.2
Q ss_pred CcccccccCCCCCccEE-EEecCCCcEEEEEccCCccccccc-----------cccCCce---eEEeeecccc-------
Q 021036 71 KKYPVPQNGSSNWFSIL-AVGGRSGKVSLWRICVPKCYSVED-----------CKVPTTA---VLIGLFQAHN------- 128 (318)
Q Consensus 71 ~~~~v~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~-----------~~~~~~~---~~~~~~~~h~------- 128 (318)
+....+.+.++++|+|+ |+|...-.|++||+..-...-..+ ....... +.-+.+.-|.
T Consensus 50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~ 129 (703)
T KOG2321|consen 50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYR 129 (703)
T ss_pred CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeee
Confidence 34445677778887875 667778899999997532100000 0000000 0001111121
Q ss_pred ----ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 129 ----SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 129 ----~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
..-..+++ +.+..++++.| ....|.=++++.|.-+..+.... +.++++.++
T Consensus 130 ~RIP~~GRDm~y------~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~--------------~~lN~v~in---- 184 (703)
T KOG2321|consen 130 TRIPKFGRDMKY------HKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDS--------------GELNVVSIN---- 184 (703)
T ss_pred eecCcCCccccc------cCCCccEEEee-cCcceEEEEcccccccccccccc--------------ccceeeeec----
Confidence 12245555 23344444444 44578888999988776665433 378999998
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee------ecccC-----ceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY------NAHDQ-----VVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~------~~h~~-----~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+...+|++|+.+|.|..| |.++.. .+.++ ..|.+ .|+++.|+.+|-.+++|..+|.+.|||++.
T Consensus 185 -~~hgLla~Gt~~g~VEfw--DpR~ks--rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 185 -EEHGLLACGTEDGVVEFW--DPRDKS--RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred -CccceEEecccCceEEEe--cchhhh--hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence 888999999999999999 555543 22222 22333 499999999999999999999999999999
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCC--CcEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG--NLVVAM 315 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~--~~~l~~ 315 (318)
.....+.-|.... +|..+.|.+. +..+++
T Consensus 260 ~~pl~~kdh~~e~-------------pi~~l~~~~~~~q~~v~S 290 (703)
T KOG2321|consen 260 SKPLLVKDHGYEL-------------PIKKLDWQDTDQQNKVVS 290 (703)
T ss_pred CCceeecccCCcc-------------ceeeecccccCCCceEEe
Confidence 8887777666554 7777777663 334444
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.23 E-value=9.5e-10 Score=96.87 Aligned_cols=161 Identities=19% Similarity=0.084 Sum_probs=105.3
Q ss_pred CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCccee
Q 021036 94 GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQ 170 (318)
Q Consensus 94 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~ 170 (318)
..|.+||....+ .+.+..+...+.+..| +++|+.|+..+.+ ..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~---------------~~~lt~~~~~v~~p~w-------SpDg~~la~~s~~~~~~~l~~~dl~~g~~~ 241 (433)
T PRK04922 184 YALQVADSDGYN---------------PQTILRSAEPILSPAW-------SPDGKKLAYVSFERGRSAIYVQDLATGQRE 241 (433)
T ss_pred EEEEEECCCCCC---------------ceEeecCCCccccccC-------CCCCCEEEEEecCCCCcEEEEEECCCCCEE
Confidence 358888886432 2344556778999999 8999998887743 46999999877543
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCc--EEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGS--FDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
..... ........|+ |+|+.++ +.+.+|. |++| +..+++. ..+..+......
T Consensus 242 ~l~~~---------------~g~~~~~~~S-----pDG~~l~~~~s~~g~~~Iy~~--d~~~g~~---~~lt~~~~~~~~ 296 (433)
T PRK04922 242 LVASF---------------RGINGAPSFS-----PDGRRLALTLSRDGNPEIYVM--DLGSRQL---TRLTNHFGIDTE 296 (433)
T ss_pred EeccC---------------CCCccCceEC-----CCCCEEEEEEeCCCCceEEEE--ECCCCCe---EECccCCCCccc
Confidence 22111 1123467888 8998665 4556665 6666 6666653 234445555567
Q ss_pred EEEcCCCCEEEEecC-CCc--EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 248 LAWAFDGCCLYSCSQ-DNF--VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 248 ~~~~~~~~~l~s~~~-d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+|+|+|++|+..+. +|. |+++|+.++....+..... ....++|+|||++|+..
T Consensus 297 ~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~---------------~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 297 PTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGN---------------YNARASVSPDGKKIAMV 353 (433)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCC---------------CccCEEECCCCCEEEEE
Confidence 899999998876653 444 6666666666554443221 23468999999998864
No 244
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=7.3e-09 Score=90.73 Aligned_cols=171 Identities=15% Similarity=0.029 Sum_probs=101.7
Q ss_pred EEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CC----cEE
Q 021036 88 AVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DG----SVR 160 (318)
Q Consensus 88 ~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~----~v~ 160 (318)
++...+| .|.+.++.+++ .+.+..+. +.....+| +|+|+.|+..+. +| .+.
T Consensus 203 y~S~~~g~~~I~~~~l~~g~------------~~~lt~~~---g~~~~p~w-------SPDG~~Laf~s~~~g~~di~~~ 260 (428)
T PRK01029 203 YVSYKLGVPKIFLGSLENPA------------GKKILALQ---GNQLMPTF-------SPRKKLLAFISDRYGNPDLFIQ 260 (428)
T ss_pred EEEccCCCceEEEEECCCCC------------ceEeecCC---CCccceEE-------CCCCCEEEEEECCCCCcceeEE
Confidence 3555554 46666777655 23333333 34456899 999988876553 23 344
Q ss_pred EEECCCc---ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEee
Q 021036 161 IWDGYIQ---ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 161 iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+|++..+ +...... .........+|+ |||+.|+..+ .+|...+|.++...... ...
T Consensus 261 ~~~~~~g~~g~~~~lt~--------------~~~~~~~~p~wS-----PDG~~Laf~s~~~g~~~ly~~~~~~~g~-~~~ 320 (428)
T PRK01029 261 SFSLETGAIGKPRRLLN--------------EAFGTQGNPSFS-----PDGTRLVFVSNKDGRPRIYIMQIDPEGQ-SPR 320 (428)
T ss_pred EeecccCCCCcceEeec--------------CCCCCcCCeEEC-----CCCCEEEEEECCCCCceEEEEECccccc-ceE
Confidence 4666543 1111111 111123456888 9998777655 56766777555432110 122
Q ss_pred eeecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEE
Q 021036 237 SYNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVV 313 (318)
Q Consensus 237 ~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 313 (318)
.+..+...+....|+|||++|+..+.+ ..|.+||+.++....+..... .+....|+|||++|
T Consensus 321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~---------------~~~~p~wSpDG~~L 385 (428)
T PRK01029 321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE---------------NKESPSWAIDSLHL 385 (428)
T ss_pred EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC---------------CccceEECCCCCEE
Confidence 333444566788999999988766543 469999998887765543221 34678999999987
Q ss_pred EE
Q 021036 314 AM 315 (318)
Q Consensus 314 ~~ 315 (318)
+.
T Consensus 386 ~f 387 (428)
T PRK01029 386 VY 387 (428)
T ss_pred EE
Confidence 74
No 245
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.20 E-value=1.3e-10 Score=92.00 Aligned_cols=220 Identities=14% Similarity=0.152 Sum_probs=134.3
Q ss_pred cccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccc------------ccEEEEEeeeecCCC
Q 021036 76 PQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHN------------SWITSISLAVLSSDS 143 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~p~~~~~ 143 (318)
+++.+..-|.+|++|...|.|.++..+...-.. .+....+++|. ..|..+.|..
T Consensus 30 taVefd~tg~YlatGDkgGRVvlfer~~s~~ce---------ykf~teFQshe~EFDYLkSleieEKin~I~w~~----- 95 (460)
T COG5170 30 TAVEFDETGLYLATGDKGGRVVLFEREKSYGCE---------YKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD----- 95 (460)
T ss_pred eEEEeccccceEeecCCCceEEEeecccccccc---------hhhhhhhcccccchhhhhhccHHHHhhheeeec-----
Confidence 333344445999999999999999876432100 22334455553 4688899821
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCccee--ee------ec-cccccc--------------------ccceeeeeecccce
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQ--KS------AE-AHCVPF--------------------SLLKEVVTVNTVPI 194 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~--~~------~~-~~~~~~--------------------~~~~~~~~~~~~~v 194 (318)
..+...++..+.|.+|++|.+...... .. +. ....|+ .+.+....+|..-+
T Consensus 96 ~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhi 175 (460)
T COG5170 96 DTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHI 175 (460)
T ss_pred CCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEe
Confidence 223356778889999999998754111 00 00 000000 00111235677788
Q ss_pred eEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-----cCceeEEEEcCC-CCEEEEecCCCcEEE
Q 021036 195 SVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH-----DQVVTGLAWAFD-GCCLYSCSQDNFVRS 268 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~-~~~l~s~~~d~~v~i 268 (318)
+++.++ .+...++++. |-.|.+|+++...+.+ .+...+.| ..-|++..|+|. ...+...+..|.|++
T Consensus 176 NSiS~N-----sD~et~lSaD-dLrINLWnl~i~D~sF-nIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 176 NSISFN-----SDKETLLSAD-DLRINLWNLEIIDGSF-NIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred eeeeec-----Cchheeeecc-ceeeeeccccccCCce-EEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 999998 7777777765 8899999888877765 33344444 356888999996 446667778899999
Q ss_pred EEecCCceeeeecCCCCCCcc--ccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 269 WIFHGNSLSQVSIPTNTPGLQ--SCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 269 wd~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-|++...+..-+-......+. ...-+.+-...|..+.|+++|++|++-
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 999854432211110000000 011122344678899999999999863
No 246
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=1.1e-08 Score=87.39 Aligned_cols=174 Identities=10% Similarity=0.050 Sum_probs=113.0
Q ss_pred cEE-EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 85 SIL-AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 85 ~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+++ ++-..+|.|.+.|..+. +.+..+......-..+.+ +++|+++++++.||.|.++|
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~--------------~~~~~i~~~~~~h~~~~~-------s~Dgr~~yv~~rdg~vsviD 64 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN--------------KVVARIPTGGAPHAGLKF-------SPDGRYLYVANRDGTVSVID 64 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT---------------SEEEEEE-STTEEEEEE--------TT-SSEEEEEETTSEEEEEE
T ss_pred cEEEEEecCCCEEEEEECCCC--------------eEEEEEcCCCCceeEEEe-------cCCCCEEEEEcCCCeEEEEE
Confidence 455 45667899999999884 455666654444445778 89999999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeeec--
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYNA-- 240 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~-- 240 (318)
+.+++.+.++.... ....++++ ++|+++++++ ..+.+.++ |.++.+ ++..+..
T Consensus 65 ~~~~~~v~~i~~G~---------------~~~~i~~s-----~DG~~~~v~n~~~~~v~v~--D~~tle--~v~~I~~~~ 120 (369)
T PF02239_consen 65 LATGKVVATIKVGG---------------NPRGIAVS-----PDGKYVYVANYEPGTVSVI--DAETLE--PVKTIPTGG 120 (369)
T ss_dssp TTSSSEEEEEE-SS---------------EEEEEEE-------TTTEEEEEEEETTEEEEE--ETTT----EEEEEE--E
T ss_pred CCcccEEEEEecCC---------------CcceEEEc-----CCCCEEEEEecCCCceeEe--cccccc--ceeeccccc
Confidence 99999888876544 45688999 9999998876 68999998 666655 5555432
Q ss_pred -----ccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 241 -----HDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 241 -----h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
....+.++..+|....++ +.-+-+.|.+.|...........-... .......|+|++++++
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g-------------~~~~D~~~dpdgry~~ 187 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVG-------------RFPHDGGFDPDGRYFL 187 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE---------------TTEEEEEE-TTSSEEE
T ss_pred ccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeeccc-------------ccccccccCcccceee
Confidence 234567888888877444 444558888888765432221111111 1346889999999876
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
.+
T Consensus 188 va 189 (369)
T PF02239_consen 188 VA 189 (369)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 247
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.19 E-value=4.4e-08 Score=83.84 Aligned_cols=198 Identities=17% Similarity=0.129 Sum_probs=124.2
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.++-..++.+.+.|..+.+.+..+......|.. +.++|++ +++++.+.||.|.++
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~-------~~~s~Dg------------------r~~yv~~rdg~vsvi 63 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAG-------LKFSPDG------------------RYLYVANRDGTVSVI 63 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEE-------EE-TT-S------------------SEEEEEETTSEEEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeE-------EEecCCC------------------CEEEEEcCCCeEEEE
Confidence 456778999999999998877766542211111 4566666 899999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCCcceeeeeccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
|+.+.+ .+++++.-. ...++++ +++|++++++. .++.+.++|.++.+.++.+.....
T Consensus 64 D~~~~~--------------~v~~i~~G~-~~~~i~~-------s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~ 121 (369)
T PF02239_consen 64 DLATGK--------------VVATIKVGG-NPRGIAV-------SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGM 121 (369)
T ss_dssp ETTSSS--------------EEEEEE-SS-EEEEEEE---------TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE
T ss_pred ECCccc--------------EEEEEecCC-CcceEEE-------cCCCCEEEEEecCCCceeEeccccccceeecccccc
Confidence 999854 556665433 4578999 89999998776 579999999999998887765432
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC-CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS-GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 257 (318)
+... ....+..+..+ +....++..-.| +.|.+- |....+......+. -........|+|+++++
T Consensus 122 ~~~~-------~~~Rv~aIv~s-----~~~~~fVv~lkd~~~I~vV--dy~d~~~~~~~~i~-~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 122 PVDG-------PESRVAAIVAS-----PGRPEFVVNLKDTGEIWVV--DYSDPKNLKVTTIK-VGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp -TTT-------S---EEEEEE------SSSSEEEEEETTTTEEEEE--ETTTSSCEEEEEEE---TTEEEEEE-TTSSEE
T ss_pred cccc-------cCCCceeEEec-----CCCCEEEEEEccCCeEEEE--Eeccccccceeeec-ccccccccccCccccee
Confidence 1100 12345666666 666656555544 655554 55444322233332 34456788999999976
Q ss_pred EE-ecCCCcEEEEEecCCceeee
Q 021036 258 YS-CSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 258 ~s-~~~d~~v~iwd~~~~~~~~~ 279 (318)
+. ......|-++|..++++...
T Consensus 187 ~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp EEEEGGGTEEEEEETTTTEEEEE
T ss_pred eecccccceeEEEeeccceEEEE
Confidence 55 45667899999988766543
No 248
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.18 E-value=9.4e-09 Score=80.98 Aligned_cols=192 Identities=17% Similarity=0.109 Sum_probs=120.4
Q ss_pred CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccC
Q 021036 25 KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICV 103 (318)
Q Consensus 25 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~ 103 (318)
..|.+.++++...+..+.... +-.... ....+.|.... + +|. .++-+..+|.|.++....
T Consensus 44 R~Gkl~Lys~~d~~~~~l~~~-q~~dts---~~~dm~w~~~~----~-----------~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLDTL-QCTDTS---TEFDMLWRIRE----T-----------DGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred eccceEEEeecccccCcccee-eeeccc---ccceeeeeecc----C-----------CccceeeeccccceEEEEeecc
Confidence 345677777777666552221 111111 13336776433 1 123 566677889999988764
Q ss_pred CccccccccccCCceeEEeeecccc---ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee--eeccccc
Q 021036 104 PKCYSVEDCKVPTTAVLIGLFQAHN---SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK--SAEAHCV 178 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~ 178 (318)
.+.. -.++.+.... ....++.| ++.+..++++..+|.+.+-+.......+ ..+
T Consensus 105 ~~ss-----------~~L~~ls~~ki~~~~~lslD~-------~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk---- 162 (339)
T KOG0280|consen 105 DESS-----------VHLRGLSSKKISVVEALSLDI-------STSGTKIFVSDSRGSISGVYETEMVLEKVQTWK---- 162 (339)
T ss_pred ceee-----------eeecccchhhhhheeeeEEEe-------eccCceEEEEcCCCcEEEEecceeeeeeccccc----
Confidence 3210 1111122111 12457788 7788889999999998855444333222 333
Q ss_pred ccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC-CCCEE
Q 021036 179 PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCL 257 (318)
Q Consensus 179 ~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l 257 (318)
.|..+.....|+. .+.+++++|+.|+.+..||++... ++ .-..-+.|...|.++.-+| .+.+|
T Consensus 163 ----------~He~E~Wta~f~~----~~pnlvytGgDD~~l~~~D~R~p~-~~-i~~n~kvH~~GV~SI~ss~~~~~~I 226 (339)
T KOG0280|consen 163 ----------VHEFEAWTAKFSD----KEPNLVYTGGDDGSLSCWDIRIPK-TF-IWHNSKVHTSGVVSIYSSPPKPTYI 226 (339)
T ss_pred ----------ccceeeeeeeccc----CCCceEEecCCCceEEEEEecCCc-ce-eeecceeeecceEEEecCCCCCceE
Confidence 3455777777772 456899999999999999654322 32 2222456889999998877 57899
Q ss_pred EEecCCCcEEEEEecC
Q 021036 258 YSCSQDNFVRSWIFHG 273 (318)
Q Consensus 258 ~s~~~d~~v~iwd~~~ 273 (318)
++|+.|-.|++||.++
T Consensus 227 ~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 227 ATGSYDECIRVLDTRN 242 (339)
T ss_pred EEeccccceeeeehhc
Confidence 9999999999999985
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.18 E-value=8.1e-11 Score=111.91 Aligned_cols=175 Identities=17% Similarity=0.253 Sum_probs=129.5
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
.+||++||.+++|..-.++.+.... .. +. ..|+.+.|+.+|+.+..+..||.+.+|
T Consensus 2223 Yltgs~dgsv~~~~w~~~~~v~~~r-------------------t~----g~-s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2223 YLTGSQDGSVRMFEWGHGQQVVCFR-------------------TA----GN-SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred EEecCCCceEEEEeccCCCeEEEee-------------------cc----Cc-chhhhhhhcccCCceeeeccCCceeec
Confidence 4899999999999876655422221 11 11 445666667777999999999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe---CCCcEEEEECCCcceeeeeccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS---SDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~---~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
... .++....+.|....+..+| -. ..+++++ .++.+.+||..-......
T Consensus 2279 q~~---------------pk~~~s~qchnk~~~Df~F-------i~--s~~~tag~s~d~~n~~lwDtl~~~~~s~---- 2330 (2439)
T KOG1064|consen 2279 QAS---------------PKPYTSWQCHNKALSDFRF-------IG--SLLATAGRSSDNRNVCLWDTLLPPMNSL---- 2330 (2439)
T ss_pred ccC---------------CcceeccccCCccccceee-------ee--hhhhccccCCCCCcccchhcccCcccce----
Confidence 987 2466778899999999999 33 4577764 468999999763322111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
+...|.+.++++++. |...+|++|+.+|.|++| |++..+ ..++++. ++ ...+
T Consensus 2331 ---------v~~~H~~gaT~l~~~-----P~~qllisggr~G~v~l~--D~rqrq--l~h~~~~---------~~-~~~~ 2382 (2439)
T KOG1064|consen 2331 ---------VHTCHDGGATVLAYA-----PKHQLLISGGRKGEVCLF--DIRQRQ--LRHTFQA---------LD-TREY 2382 (2439)
T ss_pred ---------eeeecCCCceEEEEc-----CcceEEEecCCcCcEEEe--ehHHHH--HHHHhhh---------hh-hhhe
Confidence 115677899999999 999999999999999999 555544 3333332 34 4669
Q ss_pred EEEecCCCcEEEEEecCC
Q 021036 257 LYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~ 274 (318)
|++|+..|.++||++..-
T Consensus 2383 f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eeccCcccceEEEEcccc
Confidence 999999999999999764
No 250
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.18 E-value=5.8e-09 Score=81.18 Aligned_cols=179 Identities=12% Similarity=-0.023 Sum_probs=117.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+||.|+..|...+|...+.+.. .+....|...|.-+.= . .....-+.-++.|.++++.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h-------------~~~cd~snn~v~~~~r---~---cd~~~~~~i~sndht~k~~~~ 145 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGH-------------LYQCDVSNNDVTLVKR---Y---CDLKFPLNIASNDHTGKTMVV 145 (344)
T ss_pred cEEEeccccceeeeecccCcccc-------------eeeecccccchhhhhh---h---cccccceeeccCCcceeEEEE
Confidence 68999999999999999876532 2222233332221110 0 111123666788899999988
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
..+.......... -.+.++.++ ++++++++.+....|..|.+|-.......+ .....+..
T Consensus 146 ~~~s~~~~~h~~~--------------~~~ns~~~s-----nd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~a~t~D~ 205 (344)
T KOG4532|consen 146 SGDSNKFAVHNQN--------------LTQNSLHYS-----NDPSWGSSVGDSRRVFRYAIDDESEYIENI-YEAPTSDH 205 (344)
T ss_pred ecCcccceeeccc--------------cceeeeEEc-----CCCceEEEecCCCcceEEEeCCccceeeee-EecccCCC
Confidence 7654333222111 147788998 999999999999999999877655543221 22333444
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL 311 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~ 311 (318)
-.+..|+.....+|++.+||++.|||++.......... ..-+.|.+.++.+.|++-|.
T Consensus 206 gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~s---------strp~hnGa~R~c~Fsl~g~ 263 (344)
T KOG4532|consen 206 GFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEIS---------STRPHHNGAFRVCRFSLYGL 263 (344)
T ss_pred ceeeeeccCcceEEEEecCCcEEEEEecccccchhhhc---------ccCCCCCCceEEEEecCCCc
Confidence 56788999888999999999999999987332211111 12234788999999998554
No 251
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=6.2e-09 Score=91.57 Aligned_cols=149 Identities=15% Similarity=0.079 Sum_probs=96.9
Q ss_pred eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEE
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLS 198 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 198 (318)
+.+..+...+....| +++|++|+.++.+ ..|++||+.+++...... ....+..++
T Consensus 183 ~~l~~~~~~~~~p~~-------Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~---------------~~~~~~~~~ 240 (417)
T TIGR02800 183 QTITRSREPILSPAW-------SPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS---------------FPGMNGAPA 240 (417)
T ss_pred EEeecCCCceecccC-------CCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec---------------CCCCccceE
Confidence 334456667889999 9999999887654 479999998875433211 112345678
Q ss_pred EeeccCCCCceEEE-EEeCCCc--EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEec
Q 021036 199 LILPVQSPRLMLLA-VGKGSGS--FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFH 272 (318)
Q Consensus 199 ~~~~~~~~~~~~l~-~~~~dg~--i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~ 272 (318)
|+ |+|+.|+ +.+.++. |++| +..++... .+..+........|+|+|+.|+..+. ++ .|+++|+.
T Consensus 241 ~s-----pDg~~l~~~~~~~~~~~i~~~--d~~~~~~~---~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~ 310 (417)
T TIGR02800 241 FS-----PDGSKLAVSLSKDGNPDIYVM--DLDGKQLT---RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDAD 310 (417)
T ss_pred EC-----CCCCEEEEEECCCCCccEEEE--ECCCCCEE---ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 88 8998665 4555555 5555 66555432 23334444557789999998876554 33 57777877
Q ss_pred CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 273 GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++....+..... ....++|+|||++|+.+.
T Consensus 311 ~~~~~~l~~~~~---------------~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 311 GGEVRRLTFRGG---------------YNASPSWSPDGDLIAFVH 340 (417)
T ss_pred CCCEEEeecCCC---------------CccCeEECCCCCEEEEEE
Confidence 766554433322 446789999999887653
No 252
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.14 E-value=3.5e-09 Score=96.21 Aligned_cols=182 Identities=13% Similarity=0.090 Sum_probs=127.7
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-----EEEEEeeeecCCCCCCCcE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-----ITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~p~~~~~~~~~~~ 149 (318)
+....+.-+.+.++.+..+..+.|||...+.. ....+. ... ..-+-. +.+.-+
T Consensus 90 i~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~--------------~~~i~~-~er~~l~~~~~~g~-------s~~~~~ 147 (967)
T KOG0974|consen 90 IFGAKLFEENKKIALVTSRNSLLIRDSKNSSV--------------LSKIQS-DERCTLYSSLIIGD-------SAEELY 147 (967)
T ss_pred ccccchhhhcceEEEEEcCceEEEEecccCce--------------ehhcCC-CceEEEEeEEEEec-------cCcEEE
Confidence 44455555678889999999999999987542 222221 111 111222 556678
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC 229 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~ 229 (318)
+++|+.-+.|.+|+........ ...+|.+.+..+.++ .+|.++++.+.|.++++|+++ +
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~--------------~l~GHeG~iF~i~~s-----~dg~~i~s~SdDRsiRlW~i~--s 206 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPI--------------RLKGHEGSIFSIVTS-----LDGRYIASVSDDRSIRLWPID--S 206 (967)
T ss_pred EEeccccccEEEEeccccCCcc--------------eecccCCceEEEEEc-----cCCcEEEEEecCcceeeeecc--c
Confidence 9999999999999987222211 235667799999999 899999999999999999654 4
Q ss_pred CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 230 NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 230 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+. ......+|+..|+.+.|.|. .++++++|.+.++|+.....+..+..|.. ..+..++..++
T Consensus 207 ~~~-~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~g--------------~~iw~~~~~~~ 269 (967)
T KOG0974|consen 207 REV-LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHSG--------------KGIWKIAVPIG 269 (967)
T ss_pred ccc-cCcccccccceeEEEEeccc--eeEEeccceEEEEEecccceehhhhhhhh--------------cceeEEEEcCC
Confidence 432 22456789999999999999 89999999999999776555543333322 25667777766
Q ss_pred CcEEEEE
Q 021036 310 NLVVAMV 316 (318)
Q Consensus 310 ~~~l~~~ 316 (318)
.-.++|+
T Consensus 270 ~~~~vT~ 276 (967)
T KOG0974|consen 270 VIIKVTG 276 (967)
T ss_pred ceEEEee
Confidence 6665554
No 253
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.13 E-value=3.9e-07 Score=77.86 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=120.1
Q ss_pred cCCCCCccEEEEec-CCCcEEEEEccCCccccccccccCCceeEEeee----------ccccccEEEEEeeeecCCCCCC
Q 021036 78 NGSSNWFSILAVGG-RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF----------QAHNSWITSISLAVLSSDSSNP 146 (318)
Q Consensus 78 ~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~----------~~h~~~v~~~~~~p~~~~~~~~ 146 (318)
+++++++++|+++. .+|.|.++++.....+ ......+ +.......++.+ +|+
T Consensus 92 i~~~~~g~~l~vany~~g~v~v~~l~~~g~l----------~~~~~~~~~~g~g~~~~rq~~~h~H~v~~-------~pd 154 (345)
T PF10282_consen 92 IAVDPDGRFLYVANYGGGSVSVFPLDDDGSL----------GEVVQTVRHEGSGPNPDRQEGPHPHQVVF-------SPD 154 (345)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTSEE----------EEEEEEEESEEEESSTTTTSSTCEEEEEE--------TT
T ss_pred EEEecCCCEEEEEEccCCeEEEEEccCCccc----------ceeeeecccCCCCCcccccccccceeEEE-------CCC
Confidence 33444447777765 5899999999873221 1111111 112345788999 899
Q ss_pred CcEEEEEeC-CCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEe
Q 021036 147 QVLLVTGSS-DGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLW 223 (318)
Q Consensus 147 ~~~l~s~~~-d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw 223 (318)
++++++... ...|.+|++..... +.... .+........+.+.|+ |+++++++.+ .++.|.+|
T Consensus 155 g~~v~v~dlG~D~v~~~~~~~~~~~l~~~~----------~~~~~~G~GPRh~~f~-----pdg~~~Yv~~e~s~~v~v~ 219 (345)
T PF10282_consen 155 GRFVYVPDLGADRVYVYDIDDDTGKLTPVD----------SIKVPPGSGPRHLAFS-----PDGKYAYVVNELSNTVSVF 219 (345)
T ss_dssp SSEEEEEETTTTEEEEEEE-TTS-TEEEEE----------EEECSTTSSEEEEEE------TTSSEEEEEETTTTEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEeCCCceEEEee----------ccccccCCCCcEEEEc-----CCcCEEEEecCCCCcEEEE
Confidence 998888754 45899999876541 21100 0111223467899999 8988776654 67889999
Q ss_pred eeccCCCeeeEeeeeecc------cCceeEEEEcCCCCEEEEe-cCCCcEEEEEec--CCceeeeecCCCCCCccccccC
Q 021036 224 KCDISCNKFDKVGSYNAH------DQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDL 294 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~ 294 (318)
+++...+.++.+...... ......+.++|+|++|+++ ...+.|.+|++. ++.+..+..-+..
T Consensus 220 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~--------- 290 (345)
T PF10282_consen 220 DYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG--------- 290 (345)
T ss_dssp EEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---------
T ss_pred eecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---------
Confidence 877556665555544321 1256789999999987665 456789999994 3455433322110
Q ss_pred CCcceeeeEEEEcCCCcEEEEEe
Q 021036 295 PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 295 ~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+.++++|+|++|+++.
T Consensus 291 ---G~~Pr~~~~s~~g~~l~Va~ 310 (345)
T PF10282_consen 291 ---GKFPRHFAFSPDGRYLYVAN 310 (345)
T ss_dssp ---SSSEEEEEE-TTSSEEEEEE
T ss_pred ---CCCccEEEEeCCCCEEEEEe
Confidence 01358999999999998764
No 254
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.12 E-value=4.2e-07 Score=77.72 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=135.8
Q ss_pred EEeeCC----CceeEeecC--CCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC--
Q 021036 21 VAASKS----KGNSITKIP--SNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR-- 92 (318)
Q Consensus 21 ~t~s~d----~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~-- 92 (318)
+.|+.+ +.|.++++. +++. ..+.. ..... ...-++++|++ ++|++...
T Consensus 3 ~vgsy~~~~~~gI~~~~~d~~~g~l-~~~~~--~~~~~---~Ps~l~~~~~~------------------~~LY~~~e~~ 58 (345)
T PF10282_consen 3 YVGSYTNGKGGGIYVFRFDEETGTL-TLVQT--VAEGE---NPSWLAVSPDG------------------RRLYVVNEGS 58 (345)
T ss_dssp EEEECCSSSSTEEEEEEEETTTTEE-EEEEE--EEESS---SECCEEE-TTS------------------SEEEEEETTS
T ss_pred EEEcCCCCCCCcEEEEEEcCCCCCc-eEeee--ecCCC---CCceEEEEeCC------------------CEEEEEEccc
Confidence 445554 799999883 3332 22221 11111 12237777777 78777755
Q ss_pred --CCcEEEEEccCC-ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEECCC-c
Q 021036 93 --SGKVSLWRICVP-KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWDGYI-Q 167 (318)
Q Consensus 93 --dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd~~~-~ 167 (318)
+|.|..|++... .. .+.+.........-..+++ ++++++|+++.. +|.|.++++.. +
T Consensus 59 ~~~g~v~~~~i~~~~g~-----------L~~~~~~~~~g~~p~~i~~-------~~~g~~l~vany~~g~v~v~~l~~~g 120 (345)
T PF10282_consen 59 GDSGGVSSYRIDPDTGT-----------LTLLNSVPSGGSSPCHIAV-------DPDGRFLYVANYGGGSVSVFPLDDDG 120 (345)
T ss_dssp STTTEEEEEEEETTTTE-----------EEEEEEEEESSSCEEEEEE-------CTTSSEEEEEETTTTEEEEEEECTTS
T ss_pred cCCCCEEEEEECCCcce-----------eEEeeeeccCCCCcEEEEE-------ecCCCEEEEEEccCCeEEEEEccCCc
Confidence 578999998763 11 2344444423344456888 889999888875 79999999986 3
Q ss_pred ceeeeec--cccc-ccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-ccc
Q 021036 168 ELQKSAE--AHCV-PFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-AHD 242 (318)
Q Consensus 168 ~~~~~~~--~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~h~ 242 (318)
....... .+.. .... .........++.++ |+++++++.. ....|.+|+++...++......+. ...
T Consensus 121 ~l~~~~~~~~~~g~g~~~----~rq~~~h~H~v~~~-----pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G 191 (345)
T PF10282_consen 121 SLGEVVQTVRHEGSGPNP----DRQEGPHPHQVVFS-----PDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG 191 (345)
T ss_dssp EEEEEEEEEESEEEESST----TTTSSTCEEEEEE------TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT
T ss_pred ccceeeeecccCCCCCcc----cccccccceeEEEC-----CCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC
Confidence 3322211 0000 0000 00012245678898 9998877765 456799997776664443433333 234
Q ss_pred CceeEEEEcCCCCEEEE-ecCCCcEEEEEec--CCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 243 QVVTGLAWAFDGCCLYS-CSQDNFVRSWIFH--GNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.....+.|+|+++++.. .-.+++|.++++. .+.+..+..-+..+ .... .......++++|||++|.+..
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~-----~~~~-~~~~~~~i~ispdg~~lyvsn 263 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP-----EGFT-GENAPAEIAISPDGRFLYVSN 263 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE-----TTSC-SSSSEEEEEE-TTSSEEEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc-----cccc-ccCCceeEEEecCCCEEEEEe
Confidence 55789999999997654 4567889999998 44333222111000 0000 112567899999999987754
No 255
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.2e-08 Score=88.37 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=95.3
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+....| +++|+.|+..+.+ ..|.+||+.+++....... ........|
T Consensus 193 ~l~~~~~~~~~p~w-------SpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~---------------~g~~~~~~~ 250 (430)
T PRK00178 193 TLLQSREPILSPRW-------SPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNF---------------EGLNGAPAW 250 (430)
T ss_pred EEecCCCceeeeeE-------CCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCC---------------CCCcCCeEE
Confidence 34456678899999 8999988776643 3688999987754332111 112345788
Q ss_pred eeccCCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCc
Q 021036 200 ILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~ 275 (318)
+ |+|+.|+ +.+.+|.-.+|-++..+++.. .+..+........|+|+|+.|+..+. ++ .|+++|+.++.
T Consensus 251 S-----pDG~~la~~~~~~g~~~Iy~~d~~~~~~~---~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 251 S-----PDGSKLAFVLSKDGNPEIYVMDLASRQLS---RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred C-----CCCCEEEEEEccCCCceEEEEECCCCCeE---EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8 9998776 455566544443366666532 33445555667899999997765543 33 57777777776
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 323 ~~~lt~~~~---------------~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 323 AERVTFVGN---------------YNARPRLSADGKTLVMV 348 (430)
T ss_pred EEEeecCCC---------------CccceEECCCCCEEEEE
Confidence 655442221 12456899999988765
No 256
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2e-08 Score=88.67 Aligned_cols=149 Identities=18% Similarity=0.168 Sum_probs=95.9
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
.+..+...+.+..| +|+|+.|+..+. ++ .|.+||+.+++....... ........|
T Consensus 212 ~l~~~~~~~~~p~w-------SPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~---------------~g~~~~~~w 269 (448)
T PRK04792 212 MLLRSPEPLMSPAW-------SPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSF---------------PGINGAPRF 269 (448)
T ss_pred EeecCCCcccCceE-------CCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCC---------------CCCcCCeeE
Confidence 34455678889999 999998887654 33 588889887754322111 112235678
Q ss_pred eeccCCCCceEEEE-EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCc
Q 021036 200 ILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNS 275 (318)
Q Consensus 200 ~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~ 275 (318)
+ |+|+.|+. .+.+|...||-++..+++.+ .+..+.......+|+|||++|+..+. ++ .|.++|+.+++
T Consensus 270 S-----PDG~~La~~~~~~g~~~Iy~~dl~tg~~~---~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 270 S-----PDGKKLALVLSKDGQPEIYVVDIATKALT---RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred C-----CCCCEEEEEEeCCCCeEEEEEECCCCCeE---ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 8 99987764 56777766665577666532 33444555677899999997765543 34 46666777766
Q ss_pred eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 276 LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
...+..... .....+|+|||++|+..
T Consensus 342 ~~~Lt~~g~---------------~~~~~~~SpDG~~l~~~ 367 (448)
T PRK04792 342 VSRLTFEGE---------------QNLGGSITPDGRSMIMV 367 (448)
T ss_pred EEEEecCCC---------------CCcCeeECCCCCEEEEE
Confidence 655443221 22456899999888764
No 257
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=2.7e-07 Score=75.13 Aligned_cols=234 Identities=14% Similarity=0.114 Sum_probs=134.9
Q ss_pred CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC---CCcEEEEEcc
Q 021036 26 SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR---SGKVSLWRIC 102 (318)
Q Consensus 26 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~---dg~i~iw~~~ 102 (318)
++.|.+|++.+.+-...... .....+. .+-++|+|+. +.|.++-. +|.|--|.++
T Consensus 15 s~gI~v~~ld~~~g~l~~~~-~v~~~~n---ptyl~~~~~~------------------~~LY~v~~~~~~ggvaay~iD 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQ-LVAELGN---PTYLAVNPDQ------------------RHLYVVNEPGEEGGVAAYRID 72 (346)
T ss_pred CCceEEEEEeCcccccchhh-hccccCC---CceEEECCCC------------------CEEEEEEecCCcCcEEEEEEc
Confidence 78999998875322111111 1111222 2338899988 88888754 4677777776
Q ss_pred C--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC-CcEEEEECCC-cceeeee--ccc
Q 021036 103 V--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD-GSVRIWDGYI-QELQKSA--EAH 176 (318)
Q Consensus 103 ~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d-~~v~iwd~~~-~~~~~~~--~~~ 176 (318)
. |+ ...+........+-..++. ++++++++++... |.|.++-++. |...... ..|
T Consensus 73 ~~~G~------------Lt~ln~~~~~g~~p~yvsv-------d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h 133 (346)
T COG2706 73 PDDGR------------LTFLNRQTLPGSPPCYVSV-------DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKH 133 (346)
T ss_pred CCCCe------------EEEeeccccCCCCCeEEEE-------CCCCCEEEEEEccCceEEEEEcccCCccccceeeeec
Confidence 4 33 1222222222233377888 8999999999864 8999999875 4332221 111
Q ss_pred ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-cccCceeEEEEcCCC
Q 021036 177 CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-AHDQVVTGLAWAFDG 254 (318)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~ 254 (318)
..+. +..+.. ..-+....+. |+++++++.+ ..-.|.+|+++ .++..+..... .-......|.|+|++
T Consensus 134 ~g~~-p~~rQ~---~~h~H~a~~t-----P~~~~l~v~DLG~Dri~~y~~~--dg~L~~~~~~~v~~G~GPRHi~FHpn~ 202 (346)
T COG2706 134 TGSG-PHERQE---SPHVHSANFT-----PDGRYLVVPDLGTDRIFLYDLD--DGKLTPADPAEVKPGAGPRHIVFHPNG 202 (346)
T ss_pred CCCC-CCcccc---CCccceeeeC-----CCCCEEEEeecCCceEEEEEcc--cCccccccccccCCCCCcceEEEcCCC
Confidence 1100 000000 1115566777 9998888876 45568898654 55433322221 234456889999999
Q ss_pred CEEEEe-cCCCcEEEEEecC--CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 255 CCLYSC-SQDNFVRSWIFHG--NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 255 ~~l~s~-~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
++.... -.+++|-+|.... ++...++.....+ .++.+ ......+..+|||++|.+..
T Consensus 203 k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-----~dF~g-~~~~aaIhis~dGrFLYasN 262 (346)
T COG2706 203 KYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-----EDFTG-TNWAAAIHISPDGRFLYASN 262 (346)
T ss_pred cEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-----cccCC-CCceeEEEECCCCCEEEEec
Confidence 976544 4688999999987 4554444332211 11111 12456788888888887654
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=4.8e-08 Score=85.65 Aligned_cols=135 Identities=14% Similarity=0.018 Sum_probs=81.6
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEE--CCC-cceeeeecccccccccceeeeeecccceeEEEEeeccC
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWD--GYI-QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
......+| +|+|+.|+..+ .+|...+|. +.. +.....+.. ....+....|+
T Consensus 281 ~~~~~p~w-------SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~--------------~~~~~~~p~wS---- 335 (428)
T PRK01029 281 GTQGNPSF-------SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK--------------KYRNSSCPAWS---- 335 (428)
T ss_pred CCcCCeEE-------CCCCCEEEEEECCCCCceEEEEECcccccceEEecc--------------CCCCccceeEC----
Confidence 34467899 89998777665 466555554 332 221221211 12245677888
Q ss_pred CCCceEEEEEeCC-C--cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CCcEEEEEecCCceee
Q 021036 205 SPRLMLLAVGKGS-G--SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 205 ~~~~~~l~~~~~d-g--~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~~v~iwd~~~~~~~~ 278 (318)
|+|+.|+..+.+ | .|.+| +..+++.+. +......+....|+|||++|+..+. ...|.++|+.+++...
T Consensus 336 -PDG~~Laf~~~~~g~~~I~v~--dl~~g~~~~---Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 336 -PDGKKIAFCSVIKGVRQICVY--DLATGRDYQ---LTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred -CCCCEEEEEEcCCCCcEEEEE--ECCCCCeEE---ccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999988776543 3 46677 666665333 2222345677899999997764432 3568888988877665
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
+.... +.+...+|+|-
T Consensus 410 Lt~~~---------------g~~~~p~Ws~~ 425 (428)
T PRK01029 410 IVIGS---------------GEKRFPSWGAF 425 (428)
T ss_pred eecCC---------------CcccCceecCC
Confidence 54322 13466788874
No 259
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.08 E-value=1.1e-09 Score=95.91 Aligned_cols=169 Identities=12% Similarity=0.138 Sum_probs=120.8
Q ss_pred eeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCcccccccc-ccCCceeEEeeeccccccEEEEEe
Q 021036 58 LAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDC-KVPTTAVLIGLFQAHNSWITSISL 136 (318)
Q Consensus 58 ~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~ 136 (318)
.|++|+... .++|+|+.||.+++-.+.+...--...+ ....+...-+++.+|.+.|.-+.|
T Consensus 18 ~c~~WNke~------------------gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTW 79 (1189)
T KOG2041|consen 18 HCAEWNKES------------------GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTW 79 (1189)
T ss_pred EEEEEcccC------------------CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEe
Confidence 368898887 8999999999999998876432110000 011122334578899999999999
Q ss_pred eeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 137 AVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 137 ~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
+.+.+.|.|+..+|.|.+|-+-.|+-...+.... .++.|.+++|+ .+|..++..-.
T Consensus 80 -------Ne~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnR------------nKSvV~SmsWn-----~dG~kIcIvYe 135 (1189)
T KOG2041|consen 80 -------NENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNR------------NKSVVVSMSWN-----LDGTKICIVYE 135 (1189)
T ss_pred -------ccccccccccCCCceEEEEeeecccHHHHHhhCc------------CccEEEEEEEc-----CCCcEEEEEEc
Confidence 7888899999999999999998886554432222 24478899998 89999999999
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
||.|-+=.+| ..+ .--..+++ .....+.|++|.+.++.+-.+|.+.+||..+
T Consensus 136 DGavIVGsvd--GNR-IwgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 136 DGAVIVGSVD--GNR-IWGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cCCEEEEeec--cce-ecchhcch--heccceeecccHHHHHhhhcCCcEEEecccc
Confidence 9988774322 221 11122332 2234688999998888888899999999764
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=2.2e-08 Score=85.46 Aligned_cols=184 Identities=14% Similarity=0.203 Sum_probs=120.8
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEE--EecC--------
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILA--VGGR-------- 92 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~--~g~~-------- 92 (318)
.+.-..+|||.+.....-+.+..+.|-..+. ..+.|++.+ ..+|+ +...
T Consensus 190 kGaPa~vri~~~~~~~~~~~~a~ksFFkadk----vqm~WN~~g-----------------t~LLvLastdVDktn~SYY 248 (566)
T KOG2315|consen 190 KGAPASVRIYKYPEEGQHQPVANKSFFKADK----VQMKWNKLG-----------------TALLVLASTDVDKTNASYY 248 (566)
T ss_pred CCCCcEEEEeccccccccchhhhccccccce----eEEEeccCC-----------------ceEEEEEEEeecCCCcccc
Confidence 4556788999887655555555444433332 238999887 12222 2222
Q ss_pred -CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE--eCCCcEEEEECCCcce
Q 021036 93 -SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG--SSDGSVRIWDGYIQEL 169 (318)
Q Consensus 93 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~--~~d~~v~iwd~~~~~~ 169 (318)
+.++++.+++... ....+ ...++|+++.| +++++-|+++ -.-..+.|+|++. ..
T Consensus 249 GEq~Lyll~t~g~s--------------~~V~L-~k~GPVhdv~W-------~~s~~EF~VvyGfMPAkvtifnlr~-~~ 305 (566)
T KOG2315|consen 249 GEQTLYLLATQGES--------------VSVPL-LKEGPVHDVTW-------SPSGREFAVVYGFMPAKVTIFNLRG-KP 305 (566)
T ss_pred ccceEEEEEecCce--------------EEEec-CCCCCceEEEE-------CCCCCEEEEEEecccceEEEEcCCC-CE
Confidence 3357777776322 11122 23789999999 7888666654 3557899999873 34
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCcee
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 246 (318)
+..+. .++-+++-|+ |.|++++.++. -|.|.+| |..+.+ .+..+..-.. +
T Consensus 306 v~df~----------------egpRN~~~fn-----p~g~ii~lAGFGNL~G~mEvw--Dv~n~K--~i~~~~a~~t--t 358 (566)
T KOG2315|consen 306 VFDFP----------------EGPRNTAFFN-----PHGNIILLAGFGNLPGDMEVW--DVPNRK--LIAKFKAANT--T 358 (566)
T ss_pred eEeCC----------------CCCccceEEC-----CCCCEEEEeecCCCCCceEEE--eccchh--hccccccCCc--e
Confidence 44332 3366788998 99999998875 5789999 555544 6767665443 4
Q ss_pred EEEEcCCCCEEEEec------CCCcEEEEEecCCcee
Q 021036 247 GLAWAFDGCCLYSCS------QDNFVRSWIFHGNSLS 277 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~ 277 (318)
-..|+|||++|+|+. .|+.++||+..+..+.
T Consensus 359 ~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 359 VFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred EEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence 578999999998886 4788999999765443
No 261
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.00 E-value=1.8e-08 Score=81.05 Aligned_cols=102 Identities=24% Similarity=0.312 Sum_probs=79.7
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
+.+.|...|.|..-.+.... ..++.++.+|.+.+.+++| .+...+|.+|..|..+.+||+.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~------------~~~i~~~~~h~~~~~~l~W-------d~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNG------------CQLITTFNGHTGEVTCLKW-------DPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred EEEecccccceEEEEEeecC------------CceEEEEcCcccceEEEEE-------cCCCcEEEeccccCceEEEecc
Confidence 66777888888777776543 4577889999999999999 8888999999999999999997
Q ss_pred Ccceee-eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 166 IQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 166 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
..+-.. .+ .+|...|..++.. +.-+.+.+++.||.|-+|++
T Consensus 228 g~~g~~~el--------------~gh~~kV~~l~~~-----~~t~~l~S~~edg~i~~w~m 269 (404)
T KOG1409|consen 228 GRKGTAYEL--------------QGHNDKVQALSYA-----QHTRQLISCGEDGGIVVWNM 269 (404)
T ss_pred CCcceeeee--------------ccchhhhhhhhhh-----hhheeeeeccCCCeEEEEec
Confidence 543222 22 2344467777776 67788999999999999983
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.00 E-value=1.2e-07 Score=79.68 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=121.4
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-cEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG-SVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~-~v~iw 162 (318)
|.+++..+. |...|.+...+- . .--+|...|.-..+ ..+++-++.|..|| .+-++
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~~~--------------~--iqv~~~~~VrY~r~-------~~~~e~~vigt~dgD~l~iy 387 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWDGY--------------S--IQVGKKGGVRYRRI-------QVDPEGDVIGTNDGDKLGIY 387 (668)
T ss_pred CcEEEEEec-CcEEEECCCCCe--------------e--EEcCCCCceEEEEE-------ccCCcceEEeccCCceEEEE
Confidence 678887764 667777665432 1 12356777877777 66777899999999 99999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
|.++++....... -+.|.++..+ ++|+.++.+.....+-+. |+.++..+.+. +...
T Consensus 388 d~~~~e~kr~e~~---------------lg~I~av~vs-----~dGK~~vvaNdr~el~vi--didngnv~~id--kS~~ 443 (668)
T COG4946 388 DKDGGEVKRIEKD---------------LGNIEAVKVS-----PDGKKVVVANDRFELWVI--DIDNGNVRLID--KSEY 443 (668)
T ss_pred ecCCceEEEeeCC---------------ccceEEEEEc-----CCCcEEEEEcCceEEEEE--EecCCCeeEec--cccc
Confidence 9998865544332 2368889998 999999999776666555 66677643432 3345
Q ss_pred CceeEEEEcCCCCEEEEecCC----CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQD----NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+-|+.++|+|+++++|-+=-+ ..|+++|+.+++...+...... =.+-+|.||+++|.
T Consensus 444 ~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~---------------DfsPaFD~d~ryLY 504 (668)
T COG4946 444 GLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY---------------DFSPAFDPDGRYLY 504 (668)
T ss_pred ceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCccc---------------ccCcccCCCCcEEE
Confidence 789999999999999987555 4699999999888766544332 25678888888764
No 263
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=2.3e-09 Score=89.74 Aligned_cols=218 Identities=13% Similarity=0.142 Sum_probs=140.2
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+...+++++++.|+.+.-.|+..+.-...+.+... ..........++-+|.. .+.+++|+
T Consensus 240 v~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~-~~~~~v~L~~Ia~~P~n-----------------t~~faVgG 301 (559)
T KOG1334|consen 240 VEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREA-DEKERVGLYTIAVDPRN-----------------TNEFAVGG 301 (559)
T ss_pred ecCCCCCcccccccccceeeeeeccCCccceeeeecc-CCccceeeeeEecCCCC-----------------ccccccCC
Confidence 4566678899999999999999887655444444321 11111222346666666 46899999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeee------ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
.|.-+++||...-..... ...+..+ ....-.|++++| +.++.-|+++-.|-.|+++.-.
T Consensus 302 ~dqf~RvYD~R~~~~e~~--------n~~~~~f~p~hl~~d~~v~ITgl~Y-------sh~~sElLaSYnDe~IYLF~~~ 366 (559)
T KOG1334|consen 302 SDQFARVYDQRRIDKEEN--------NGVLDKFCPHHLVEDDPVNITGLVY-------SHDGSELLASYNDEDIYLFNKS 366 (559)
T ss_pred hhhhhhhhcccchhhccc--------cchhhhcCCccccccCcccceeEEe-------cCCccceeeeecccceEEeccc
Confidence 999999999864221000 0011111 122346899999 7666666777778889999433
Q ss_pred Ccce--eeeecccccccccceeeeeecc--cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 166 IQEL--QKSAEAHCVPFSLLKEVVTVNT--VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 166 ~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
-+.- ........ ...+.+..+|. ..|..+-|- -|..+++++|+.-|.|.+| +..+++ .+.-+++-
T Consensus 367 ~~~G~~p~~~s~~~---~~~k~vYKGHrN~~TVKgVNFf----GPrsEyVvSGSDCGhIFiW--~K~t~e--ii~~MegD 435 (559)
T KOG1334|consen 367 MGDGSEPDPSSPRE---QYVKRVYKGHRNSRTVKGVNFF----GPRSEYVVSGSDCGHIFIW--DKKTGE--IIRFMEGD 435 (559)
T ss_pred cccCCCCCCCcchh---hccchhhcccccccccceeeec----cCccceEEecCccceEEEE--ecchhH--HHHHhhcc
Confidence 2211 10000000 00111122332 235555553 3788999999999999999 666766 56666776
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..-|.|+.=+|.-..||+++-|..|+||...+
T Consensus 436 r~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 436 RHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 66899999999999999999999999998743
No 264
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.97 E-value=4.7e-09 Score=89.57 Aligned_cols=177 Identities=15% Similarity=0.130 Sum_probs=122.2
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+.+|...|..+..-.+.+-+++++.|.+|++|.++.... .-.+....-+++.|..+|+++.| -.+-
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD-------~~~tsaCQfTY~aHkk~i~~igf-------L~~l 796 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD-------EIGTSACQFTYQAHKKPIHDIGF-------LADL 796 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC-------ccccceeeeEhhhccCcccceee-------eecc
Confidence 557888888888777888999999999999999974210 00112345578899999999999 6666
Q ss_pred cEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE-EEEEeCCCcEEEeeec
Q 021036 148 VLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML-LAVGKGSGSFDLWKCD 226 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~-l~~~~~dg~i~vw~~~ 226 (318)
++++++ ||.+.+||.-.+..+..+.-... .+....|.++-- -+..+ ++.++...+|+++ |
T Consensus 797 r~i~Sc--D~giHlWDPFigr~Laq~~dapk---------~~a~~~ikcl~n------v~~~iliAgcsaeSTVKl~--D 857 (1034)
T KOG4190|consen 797 RSIASC--DGGIHLWDPFIGRLLAQMEDAPK---------EGAGGNIKCLEN------VDRHILIAGCSAESTVKLF--D 857 (1034)
T ss_pred ceeeec--cCcceeecccccchhHhhhcCcc---------cCCCceeEeccc------Ccchheeeeccchhhheee--e
Confidence 666654 89999999887766543221110 111222333211 12333 4444788999999 6
Q ss_pred cCCCeeeEeeee---ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 227 ISCNKFDKVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 227 ~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.+...+...... .+..+.+.+++..+.|++++.+-..|+|.+.|.++++..
T Consensus 858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVI 911 (1034)
T ss_pred cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCcee
Confidence 777665332222 234466889999999999999999999999999998864
No 265
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=3.7e-09 Score=85.02 Aligned_cols=155 Identities=17% Similarity=0.191 Sum_probs=107.2
Q ss_pred EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 88 AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 88 ~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++.+.+..|-+-+++++. .+.|. ..+.|.++.| ...+.++..|+..|.|...|++.+
T Consensus 228 fs~G~sqqv~L~nvetg~---------------~qsf~-sksDVfAlQf-------~~s~nLv~~GcRngeI~~iDLR~r 284 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH---------------QQSFQ-SKSDVFALQF-------AGSDNLVFNGCRNGEIFVIDLRCR 284 (425)
T ss_pred ecccccceeEEEEeeccc---------------ccccc-cchhHHHHHh-------cccCCeeEecccCCcEEEEEeeec
Confidence 444556677888888753 23344 4567899999 777889999999999999999865
Q ss_pred ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 168 ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
..-..... ..-.|+..|+++..- .-++.+|++.+.+|+|++||+.+...+ .-+.++.+|...-.-
T Consensus 285 nqG~~~~a----------~rlyh~Ssvtslq~L----q~s~q~LmaS~M~gkikLyD~R~~K~~-~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 285 NQGNGWCA----------QRLYHDSSVTSLQIL----QFSQQKLMASDMTGKIKLYDLRATKCK-KSVMQYEGHVNLSAY 349 (425)
T ss_pred ccCCCcce----------EEEEcCcchhhhhhh----ccccceEeeccCcCceeEeeehhhhcc-cceeeeecccccccc
Confidence 11110010 112356678888765 126788999999999999965443322 247788888754433
Q ss_pred E--EEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 248 L--AWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 248 ~--~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+ ...+....++++++|...|||.++.+.+....
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ti 384 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTI 384 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccCceeecc
Confidence 3 33455668899999999999999988876543
No 266
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.95 E-value=5.9e-09 Score=99.76 Aligned_cols=162 Identities=20% Similarity=0.170 Sum_probs=122.4
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCc
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+...|.++.-.|.-.+.++|+.||.|++|....++ .+..++ .-.+.|+.+.| +.+|.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~--------------~v~~~rt~g~s~vtr~~f-------~~qGn 2264 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQ--------------QVVCFRTAGNSRVTRSRF-------NHQGN 2264 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCC--------------eEEEeeccCcchhhhhhh-------cccCC
Confidence 455568888888888999999999999999998754 333332 22388999999 88999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CCCcEEEeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GSGSFDLWKC 225 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~dg~i~vw~~ 225 (318)
.+..+..||.+.+|... .+....... |....++..|- +..+++++ .++.+.+||.
T Consensus 2265 k~~i~d~dg~l~l~q~~-pk~~~s~qc--------------hnk~~~Df~Fi-------~s~~~tag~s~d~~n~~lwDt 2322 (2439)
T KOG1064|consen 2265 KFGIVDGDGDLSLWQAS-PKPYTSWQC--------------HNKALSDFRFI-------GSLLATAGRSSDNRNVCLWDT 2322 (2439)
T ss_pred ceeeeccCCceeecccC-Ccceecccc--------------CCccccceeee-------ehhhhccccCCCCCcccchhc
Confidence 99999999999999886 222222222 33356666665 25666654 6788999975
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
....... .+. ..|.+.++++++-|....|++|+.+|.|.+||++.+++.
T Consensus 2323 l~~~~~s-~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2323 LLPPMNS-LVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR 2371 (2439)
T ss_pred ccCcccc-eee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH
Confidence 4444432 444 679999999999999999999999999999999875553
No 267
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.93 E-value=2.6e-09 Score=82.65 Aligned_cols=163 Identities=13% Similarity=0.145 Sum_probs=99.7
Q ss_pred CCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 70 SKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 70 ~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.|..+-.+-+.+--++-++++..||.+.+++.+.-. +....+..-...-.+.++ ...++.
T Consensus 87 ~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~-------------~~~~~i~~~~~~~as~~~-------~~~~~~ 146 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDL-------------ALMSRIPSIHSGSASRKI-------CRHGNS 146 (319)
T ss_pred ccCCCCCcccccccCCceEecCCCceEEEEechHHH-------------hhhhhcccccccccccce-------eecccE
Confidence 344444444444556889999999999999987511 111111111111122233 233444
Q ss_pred EEEEeC-----CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 150 LVTGSS-----DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 150 l~s~~~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+.++.. -+..+.|+++..+.+ .... . ....|.+++-+ |....++++|+.||.+-+||
T Consensus 147 i~s~~~g~~n~~d~~~a~~~~p~~t~---~~~~----------~-~~~~v~~l~~h----p~qq~~v~cgt~dg~~~l~d 208 (319)
T KOG4714|consen 147 ILSGGCGNWNAQDNFYANTLDPIKTL---IPSK----------K-ALDAVTALCSH----PAQQHLVCCGTDDGIVGLWD 208 (319)
T ss_pred EecCCcceEeeccceeeecccccccc---cccc----------c-ccccchhhhCC----cccccEEEEecCCCeEEEEE
Confidence 443321 123445554432211 1110 0 01137788887 34567888999999999995
Q ss_pred eccCCCeeeEeeeeecccCceeEEEEcC-CCCEEEEecCCCcEEEEEecC
Q 021036 225 CDISCNKFDKVGSYNAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.+.... ++..++.|+.+++.+.|+| ++..|+++++||.+..||..+
T Consensus 209 --~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 209 --ARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred --cccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 445432 6677889999999999999 477899999999999999875
No 268
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.93 E-value=5.2e-09 Score=58.52 Aligned_cols=38 Identities=32% Similarity=0.589 Sum_probs=36.0
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
+++.++.+|...|++++|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 37788999999999999999999999999999999997
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.93 E-value=4.9e-06 Score=70.10 Aligned_cols=226 Identities=11% Similarity=-0.030 Sum_probs=131.6
Q ss_pred CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-c---------CCCcE
Q 021036 27 KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-G---------RSGKV 96 (318)
Q Consensus 27 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-~---------~dg~i 96 (318)
+++.+.|..+.+.+..+.....++ . + .+|++ +.|+++ + .+..|
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~-------~-~spDg------------------~~lyva~~~~~R~~~G~~~d~V 79 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-P-------V-VASDG------------------SFFAHASTVYSRIARGKRTDYV 79 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-e-------e-ECCCC------------------CEEEEEeccccccccCCCCCEE
Confidence 889999999988776666533221 1 2 45555 665555 4 58899
Q ss_pred EEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCCCCcEEEEEe-C-CCcEEEEECCCc
Q 021036 97 SLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSNPQVLLVTGS-S-DGSVRIWDGYIQ 167 (318)
Q Consensus 97 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~~~~~l~s~~-~-d~~v~iwd~~~~ 167 (318)
.+||..+.+ .+..+.-- ...-..+.+ +++|++|+... . +..|.+.|+.++
T Consensus 80 ~v~D~~t~~--------------~~~~i~~p~~p~~~~~~~~~~~~l-------s~dgk~l~V~n~~p~~~V~VvD~~~~ 138 (352)
T TIGR02658 80 EVIDPQTHL--------------PIADIELPEGPRFLVGTYPWMTSL-------TPDNKTLLFYQFSPSPAVGVVDLEGK 138 (352)
T ss_pred EEEECccCc--------------EEeEEccCCCchhhccCccceEEE-------CCCCCEEEEecCCCCCEEEEEECCCC
Confidence 999999855 33444321 122346777 89999888776 3 689999999999
Q ss_pred ceeeeecccccccccce------------eeee---ecc--cceeEEEE-e--------ec-cCCCCceEEEEEeCCCcE
Q 021036 168 ELQKSAEAHCVPFSLLK------------EVVT---VNT--VPISVLSL-I--------LP-VQSPRLMLLAVGKGSGSF 220 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~------------~~~~---~~~--~~v~~l~~-~--------~~-~~~~~~~~l~~~~~dg~i 220 (318)
+.+..+.......-... .... ... .......+ . .+ ..+.+|..+++... |.|
T Consensus 139 kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V 217 (352)
T TIGR02658 139 AFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKI 217 (352)
T ss_pred cEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeE
Confidence 88877654332110000 0000 000 00111111 0 00 01127877777775 999
Q ss_pred EEeeeccCCCee-eEeeeeec-------ccCceeEEEEcCCCCEEEEec----------CCCcEEEEEecCCceeeeecC
Q 021036 221 DLWKCDISCNKF-DKVGSYNA-------HDQVVTGLAWAFDGCCLYSCS----------QDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 221 ~vw~~~~~~~~~-~~~~~~~~-------h~~~v~~~~~~~~~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~ 282 (318)
++.|+....-.. .....+.. ..+.+.-++++|+++.++... ..+.|.++|..+++......-
T Consensus 218 ~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v 297 (352)
T TIGR02658 218 FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL 297 (352)
T ss_pred EEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC
Confidence 998532211111 11111110 233445599999988776632 225799999998877654433
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCc-EEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNL-VVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~~~ 316 (318)
.. .+.+++++||++ .|.+.
T Consensus 298 G~---------------~~~~iavS~Dgkp~lyvt 317 (352)
T TIGR02658 298 GH---------------EIDSINVSQDAKPLLYAL 317 (352)
T ss_pred CC---------------ceeeEEECCCCCeEEEEe
Confidence 32 668999999999 66543
No 270
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.5e-07 Score=78.34 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCceEEEEEe---CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe---cCCCcEEEEEecCCceeee
Q 021036 206 PRLMLLAVGK---GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC---SQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 206 ~~~~~l~~~~---~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~~~~~~~ 279 (318)
|.|+.|++-+ ...++.+|.+.....+++.+..+.. ...+.+.|+|.|++++.+ |..|.+.++|+....+...
T Consensus 455 P~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~ 532 (698)
T KOG2314|consen 455 PHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDT 532 (698)
T ss_pred cCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhc
Confidence 7888776654 3456888866655566666666654 456789999999988765 4578899999875232221
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++... ..+.+.|.|.|+|++++.
T Consensus 533 -~~~eh~-------------~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 533 -ASPEHF-------------AATEVEWDPTGRYVVTSS 556 (698)
T ss_pred -cCcccc-------------ccccceECCCCCEEEEee
Confidence 112111 457899999999999863
No 271
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.91 E-value=4.9e-08 Score=80.12 Aligned_cols=159 Identities=13% Similarity=0.061 Sum_probs=99.0
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc--ccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA--HNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
....++++++||.+..+....++++..... ..++...... -...+..+.. .......-.++
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~----------~~kl~~~~~v~~~~~ai~~~~~-------~~sv~v~dkag 129 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPK----------GAKLLDVSCVPKRPTAISFIRE-------DTSVLVADKAG 129 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCC----------cceeeeEeecccCcceeeeeec-------cceEEEEeecC
Confidence 344566679999998888877887765321 0122222211 1222333333 22222222233
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeE
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~ 234 (318)
....+.+|....+.+.. + -+|-.-++.++++ ||+++++++..|..|++=.+. ... .
T Consensus 130 D~~~~di~s~~~~~~~~-~--------------lGhvSml~dVavS-----~D~~~IitaDRDEkIRvs~yp--a~f--~ 185 (390)
T KOG3914|consen 130 DVYSFDILSADSGRCEP-I--------------LGHVSMLLDVAVS-----PDDQFIITADRDEKIRVSRYP--ATF--V 185 (390)
T ss_pred CceeeeeecccccCcch-h--------------hhhhhhhheeeec-----CCCCEEEEecCCceEEEEecC--ccc--c
Confidence 34455555554433222 1 2344578999999 999999999999999985322 211 2
Q ss_pred eee-eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 235 VGS-YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 235 ~~~-~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+.. ..||+.-|..++.-++. .|+++|.|++|++||+.+++..
T Consensus 186 IesfclGH~eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 186 IESFCLGHKEFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLL 228 (390)
T ss_pred hhhhccccHhheeeeeeccCc-eeeecCCCCcEEEEecccCCcc
Confidence 223 35799999999987765 4899999999999999987664
No 272
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.89 E-value=6.7e-07 Score=78.07 Aligned_cols=180 Identities=6% Similarity=-0.041 Sum_probs=107.6
Q ss_pred cccccCCCCCccE-EEEecC---CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcE
Q 021036 74 PVPQNGSSNWFSI-LAVGGR---SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 74 ~v~~~~~s~~~~~-l~~g~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~ 149 (318)
....-.++|+|+. ++..+. +..|.++|+.+++ .+.+. ...+......| +|+|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~------------~~~lt---~~~g~~~~~~~-------SPDG~~ 246 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK------------KEKIA---SSQGMLVVSDV-------SKDGSK 246 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc------------EEEEe---cCCCcEEeeEE-------CCCCCE
Confidence 4556778888874 554333 3468888888765 22322 23445667789 899976
Q ss_pred EEE-EeCC--CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeee
Q 021036 150 LVT-GSSD--GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKC 225 (318)
Q Consensus 150 l~s-~~~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~ 225 (318)
|+. .+.+ ..|.++|+.+++... +.... .......|+ |||+.|+..+ ..+.-.||-+
T Consensus 247 la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~--------------~~d~~p~~S-----PDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 247 LLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYP--------------GIDVNGNFV-----EDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEEEEccCCCcEEEEEECCCCcEEE-cccCC--------------CccCccEEC-----CCCCEEEEEECCCCCceEEEE
Confidence 654 4434 467777877665332 21111 012234687 8997665555 4565566666
Q ss_pred ccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC---------CcEEEEEecCCceeeeecCCCCCCccccccCCC
Q 021036 226 DISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD---------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPD 296 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
+..+++.+.+. ..+. ....|+|+|++|+..+.. ..|.+.|+.++....+....
T Consensus 307 dl~~g~~~rlt-~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~------------- 368 (419)
T PRK04043 307 KLNSGSVEQVV-FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANG------------- 368 (419)
T ss_pred ECCCCCeEeCc-cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCC-------------
Confidence 77776643332 1111 124899999988766543 36778888777665443321
Q ss_pred cceeeeEEEEcCCCcEEEEE
Q 021036 297 AFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 297 h~~~v~~v~~sp~~~~l~~~ 316 (318)
......|+|||++|+..
T Consensus 369 ---~~~~p~~SPDG~~I~f~ 385 (419)
T PRK04043 369 ---VNQFPRFSSDGGSIMFI 385 (419)
T ss_pred ---CcCCeEECCCCCEEEEE
Confidence 12357899999987754
No 273
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=8.3e-06 Score=66.61 Aligned_cols=195 Identities=12% Similarity=0.108 Sum_probs=128.9
Q ss_pred cccCCCCCccEEEEec-CCCcEEEEEccC-CccccccccccCCceeEEeeecccccc----------EEEEEeeeecCCC
Q 021036 76 PQNGSSNWFSILAVGG-RSGKVSLWRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSW----------ITSISLAVLSSDS 143 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g~-~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~p~~~~~ 143 (318)
.-++++++|++|+++. ..|.|.++-++. |... ....+..|.+. +....+
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~------------~~v~~~~h~g~~p~~rQ~~~h~H~a~~------- 152 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ------------PVVQVVKHTGSGPHERQESPHVHSANF------- 152 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc------------cceeeeecCCCCCCccccCCccceeee-------
Confidence 5567777788888875 467899999965 3321 11112223333 777888
Q ss_pred CCCCcEEEEEeCC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEE
Q 021036 144 SNPQVLLVTGSSD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFD 221 (318)
Q Consensus 144 ~~~~~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~ 221 (318)
.|++++|++.+-. -.|.+|++..|+....-... -......+.|.|+ |++++..+.+ -+++|-
T Consensus 153 tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~-----------v~~G~GPRHi~FH-----pn~k~aY~v~EL~stV~ 216 (346)
T COG2706 153 TPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAE-----------VKPGAGPRHIVFH-----PNGKYAYLVNELNSTVD 216 (346)
T ss_pred CCCCCEEEEeecCCceEEEEEcccCccccccccc-----------cCCCCCcceEEEc-----CCCcEEEEEeccCCEEE
Confidence 8999999998742 47999999976543321111 1224467899999 9999887766 589999
Q ss_pred EeeeccCCCeeeEeeeeec------ccCceeEEEEcCCCCEEEEecC-CCcEEEEEecC--CceeeeecCCCCCCccccc
Q 021036 222 LWKCDISCNKFDKVGSYNA------HDQVVTGLAWAFDGCCLYSCSQ-DNFVRSWIFHG--NSLSQVSIPTNTPGLQSCT 292 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~~~~l~s~~~-d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~ 292 (318)
+|.++...++++.++.+.. ......++..+++|++|.++.. ...|-+|.+.. +++..+...+..
T Consensus 217 v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~te------- 289 (346)
T COG2706 217 VLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTE------- 289 (346)
T ss_pred EEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccC-------
Confidence 9988877677766665431 2345678899999998877643 34677887754 444433333221
Q ss_pred cCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 293 DLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 293 ~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+...|+|+|++|++++
T Consensus 290 -----g~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 290 -----GQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred -----CcCCccceeCCCCCEEEEEc
Confidence 12347888888888887753
No 274
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.87 E-value=1.7e-06 Score=68.55 Aligned_cols=211 Identities=15% Similarity=0.189 Sum_probs=123.4
Q ss_pred CccceEEeeCCCceeEeecCCC--CCCCceec--chhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 16 NTHPTVAASKSKGNSITKIPSN--CCLPLITA--DQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+...+++.-+|..|.|-...++ .++..... ..++.-. .++|+|++ .+||.+.
T Consensus 7 ~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWR------kl~WSpD~------------------tlLa~a~ 62 (282)
T PF15492_consen 7 SDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWR------KLAWSPDC------------------TLLAYAE 62 (282)
T ss_pred CCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchhe------EEEECCCC------------------cEEEEEc
Confidence 3455677777777777754431 11111111 1122212 38899988 9999999
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeec-cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc---
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ-AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ--- 167 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~--- 167 (318)
..|+|+++|+...+...+. +...+. .-...|..+.|.+... +..-...|++-..+|.++=|-+..+
T Consensus 63 S~G~i~vfdl~g~~lf~I~---------p~~~~~~d~~~Aiagl~Fl~~~~-s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q 132 (282)
T PF15492_consen 63 STGTIRVFDLMGSELFVIP---------PAMSFPGDLSDAIAGLIFLEYKK-SAQWSYELLVINYRGQLRSYLVSVGTNQ 132 (282)
T ss_pred CCCeEEEEecccceeEEcC---------cccccCCccccceeeeEeecccc-ccccceeEEEEeccceeeeEEEEcccCC
Confidence 9999999999864432110 001111 1245788888866653 2233446777778888887765332
Q ss_pred --ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-----------cEEEeee-c-------
Q 021036 168 --ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-----------SFDLWKC-D------- 226 (318)
Q Consensus 168 --~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-----------~i~vw~~-~------- 226 (318)
+..+.+. ........|+++.++ |..++|++|+... -+.-|.+ +
T Consensus 133 ~y~e~hsfs-----------f~~~yp~Gi~~~vy~-----p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~ 196 (282)
T PF15492_consen 133 GYQENHSFS-----------FSSHYPHGINSAVYH-----PKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQ 196 (282)
T ss_pred cceeeEEEE-----------ecccCCCceeEEEEc-----CCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEE
Confidence 1222221 112235589999999 8878888776211 2445531 0
Q ss_pred -------cC----CCeeeEeeee------ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 227 -------IS----CNKFDKVGSY------NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 227 -------~~----~~~~~~~~~~------~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
.. ...+..+..+ ......|..|..||||..||+...+|.|.+|++.+-.+
T Consensus 197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 00 0000001111 11346789999999999999999999999999976333
No 275
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.86 E-value=1e-07 Score=84.87 Aligned_cols=147 Identities=18% Similarity=0.132 Sum_probs=106.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++.|+-|+.+|.|++.+.+. .+ .....|+.. ..+|++++||+.||+|.|-.
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~---------------~~-~~~~~~s~~-------------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQG---------------NP-KTNFDHSSS-------------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred cceeeeccccceEEEEecCC---------------cc-ccccccccc-------------ccCCceEEEecCCCcEEEee
Confidence 38999999999999999874 22 333334332 45789999999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
+.+.+...++..+. ++.+++++++......+.+++|+..| +.++.-+.-..+ ..+ .+..-.+
T Consensus 100 l~~~~~~~~~df~r---------------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk-~~v-~l~~~eG 161 (846)
T KOG2066|consen 100 LFTDDEITQYDFKR---------------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNK-DSV-VLSEGEG 161 (846)
T ss_pred ccCCccceeEecCC---------------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCc-cce-eeecCcc
Confidence 98887776655444 78899999332222367899999888 888732222222 122 3555678
Q ss_pred ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 244 VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
+|.++.|. |+++|-++.+| |++||+..++.....
T Consensus 162 ~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 162 PIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred ceEEEEec--CcEEEEecCCC-cEEEeccccceeecc
Confidence 99999997 88899988776 789999887765443
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.83 E-value=1.1e-06 Score=68.87 Aligned_cols=164 Identities=13% Similarity=-0.054 Sum_probs=104.2
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEe-eeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIG-LFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
+..+.++++++++++.++...|..|.+..... ..++ ....-++.=.+..| +.....++++
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se------------y~~~~~~a~t~D~gF~~S~-------s~~~~~FAv~ 221 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE------------YIENIYEAPTSDHGFYNSF-------SENDLQFAVV 221 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccc------------eeeeeEecccCCCceeeee-------ccCcceEEEE
Confidence 34455555569999999999999999976431 1222 22333445577888 7888899999
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc--eEEEEEeCCCcEEEeeeccCCCe
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL--MLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~--~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
..||++.|||++............. ..|.+.+..+.|+ +.| ++|+..-.-+.+.+- |+++.+
T Consensus 222 ~Qdg~~~I~DVR~~~tpm~~~sstr---------p~hnGa~R~c~Fs-----l~g~lDLLf~sEhfs~~hv~--D~R~~~ 285 (344)
T KOG4532|consen 222 FQDGTCAIYDVRNMATPMAEISSTR---------PHHNGAFRVCRFS-----LYGLLDLLFISEHFSRVHVV--DTRNYV 285 (344)
T ss_pred ecCCcEEEEEecccccchhhhcccC---------CCCCCceEEEEec-----CCCcceEEEEecCcceEEEE--EcccCc
Confidence 9999999999997654443332222 3477899999998 544 455555556677776 677665
Q ss_pred eeEeee-----eeccc-CceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 232 FDKVGS-----YNAHD-QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 232 ~~~~~~-----~~~h~-~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
-..+.. +..|. ..|..-.|+.++..+.+.+++ .+.-|++..+
T Consensus 286 ~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~sr 333 (344)
T KOG4532|consen 286 NHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSR 333 (344)
T ss_pred eeeEEecCccccccccccccccccccCCCcccccccch-hhheeecccc
Confidence 222211 12233 347777788777655555443 3334554443
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.79 E-value=7.3e-06 Score=79.50 Aligned_cols=219 Identities=10% Similarity=-0.010 Sum_probs=120.4
Q ss_pred cccCCCCCccEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeeccc-------cccEEEEEeeeecCCCCC-C
Q 021036 76 PQNGSSNWFSILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-------NSWITSISLAVLSSDSSN-P 146 (318)
Q Consensus 76 ~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~~~~-~ 146 (318)
..++++++++.|+++ ...+.|+++|..++........ +..-..+.+. -..-+.+++ ++ +
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~-----G~~g~~~~gg~~~~~~~ln~P~gVa~-------dp~~ 694 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGN-----GTKGSDYQGGKKGTSQVLNSPWDVCF-------EPVN 694 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEecc-----CcccCCCCCChhhhHhhcCCCeEEEE-------ecCC
Confidence 445555555755554 4567899999876532110000 0000000000 112357888 66 6
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeeccccccccccee-eeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEee
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKE-VVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWK 224 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~ 224 (318)
+.++++.+.++.|++||..++... .+.+.......... ...........++++ |+++ ++++-..++.|++||
T Consensus 695 g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavs-----pdG~~LYVADs~n~~Irv~D 768 (1057)
T PLN02919 695 EKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLS-----PDLKELYIADSESSSIRALD 768 (1057)
T ss_pred CeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEe-----CCCCEEEEEECCCCeEEEEE
Confidence 677788788899999999876532 22111100000000 000112245678999 8887 555556778999995
Q ss_pred eccCCCeeeEee-----------eeec--------ccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCC
Q 021036 225 CDISCNKFDKVG-----------SYNA--------HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNT 285 (318)
Q Consensus 225 ~~~~~~~~~~~~-----------~~~~--------h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 285 (318)
+ .++....+. .+.. .-....+++++++|..+++-..++.|++||..++....+......
T Consensus 769 ~--~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~ 846 (1057)
T PLN02919 769 L--KTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKA 846 (1057)
T ss_pred C--CCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCc
Confidence 4 333211111 0000 011246889999999888889999999999988777655432211
Q ss_pred CCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 286 PGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 286 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.. .......+......+|+++++|+++++
T Consensus 847 G~-~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 847 GF-KDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CC-CCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000112334446789999999986654
No 278
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.79 E-value=2.2e-08 Score=85.54 Aligned_cols=201 Identities=16% Similarity=0.187 Sum_probs=124.4
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.|.+..+++|.|+++++|.+...-.....+ .+.| ..+.|..+|.++.+-.+-++++++ ||
T Consensus 745 dNENSFiSASkDKTVKLWSik~EgD~~~ts--------------aCQf----TY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 745 DNENSFISASKDKTVKLWSIKPEGDEIGTS--------------ACQF----TYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred ccccceeeccCCceEEEEEeccccCccccc--------------eeee----EhhhccCcccceeeeeccceeeec--cC
Confidence 456778999999999999886522111111 1333 234567777777777777777765 78
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccc--cccEEEEEeeeecCCCCCCCcEEEEE-eCCCcEEEEECCCcceee
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH--NSWITSISLAVLSSDSSNPQVLLVTG-SSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~ 171 (318)
-|.+||.--++.+. .+..-..| ...|.|+. +-+..+++.+ +...+|+++|.+..+...
T Consensus 805 giHlWDPFigr~La-----------q~~dapk~~a~~~ikcl~--------nv~~~iliAgcsaeSTVKl~DaRsce~~~ 865 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLA-----------QMEDAPKEGAGGNIKCLE--------NVDRHILIAGCSAESTVKLFDARSCEWTC 865 (1034)
T ss_pred cceeecccccchhH-----------hhhcCcccCCCceeEecc--------cCcchheeeeccchhhheeeeccccccee
Confidence 99999987654321 00001112 22344432 2234445554 678999999999887665
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 251 (318)
.++.-.. .+..+.+.++++. +.|+.++.+-.+|.|.+. |.++++ .+..+..-......++ .
T Consensus 866 E~kVcna---------~~Pna~~R~iaVa-----~~GN~lAa~LSnGci~~L--DaR~G~--vINswrpmecdllqla-a 926 (1034)
T KOG4190|consen 866 ELKVCNA---------PGPNALTRAIAVA-----DKGNKLAAALSNGCIAIL--DARNGK--VINSWRPMECDLLQLA-A 926 (1034)
T ss_pred eEEeccC---------CCCchheeEEEec-----cCcchhhHHhcCCcEEEE--ecCCCc--eeccCCcccchhhhhc-C
Confidence 5543221 1234568899998 999999999999999997 788887 4544443333333332 2
Q ss_pred CCCCEEEEecCCCcEEE-EEecC
Q 021036 252 FDGCCLYSCSQDNFVRS-WIFHG 273 (318)
Q Consensus 252 ~~~~~l~s~~~d~~v~i-wd~~~ 273 (318)
|..+.++....|.++.+ |-...
T Consensus 927 psdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 927 PSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred chhHHHHhhcccceeEeeehhcC
Confidence 34445666666777666 65443
No 279
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.79 E-value=2.8e-08 Score=55.48 Aligned_cols=38 Identities=42% Similarity=0.720 Sum_probs=35.4
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+++..+.+|.+.|++++| ++++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~-------~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAW-------SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEE-------ETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEE-------ecccccceeeCCCCEEEEEC
Confidence 467889999999999999 88899999999999999997
No 280
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.73 E-value=1e-06 Score=79.30 Aligned_cols=190 Identities=20% Similarity=0.224 Sum_probs=118.4
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-EEEEEeeeecCCCCCCCcEEEEEeCCC----
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-ITSISLAVLSSDSSNPQVLLVTGSSDG---- 157 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~l~s~~~d~---- 157 (318)
++..++.|+.+|.|.+.+-. .+.++.++++... |..+-. .....+|++.+.|+
T Consensus 34 ~~~~vvigt~~G~V~~Ln~s---------------~~~~~~fqa~~~siv~~L~~-------~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 34 STGSVVIGTADGRVVILNSS---------------FQLIRGFQAYEQSIVQFLYI-------LNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred CCceEEEeeccccEEEeccc---------------ceeeehheecchhhhhHhhc-------ccCceEEEEEeecCCCCc
Confidence 34899999999999888765 4556778888777 444443 44557888888765
Q ss_pred -cEEEEECCCcce---eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeee
Q 021036 158 -SVRIWDGYIQEL---QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 158 -~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~ 233 (318)
.|++|+++.-+. ...+..|. ...........++++++++ .+-+.+++|-.+|.|..+.-|....+..
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~r----i~~~~np~~~~p~s~l~Vs-----~~l~~Iv~Gf~nG~V~~~~GDi~RDrgs 162 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHR----IFTIKNPTNPSPASSLAVS-----EDLKTIVCGFTNGLVICYKGDILRDRGS 162 (933)
T ss_pred eEEEEecccccCCCCCcceeeeee----eeccCCCCCCCcceEEEEE-----ccccEEEEEecCcEEEEEcCcchhcccc
Confidence 489999874321 11110000 0000011235688999999 8889999999999999985444332221
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCc-E
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNL-V 312 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~ 312 (318)
...-......+|+++.+..++..++-...-..|.+|.+.++. ..... +..|+..+++.+|++... +
T Consensus 163 r~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~------------ld~~G~~lnCss~~~~t~qf 229 (933)
T KOG2114|consen 163 RQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT-PSLKV------------LDNNGISLNCSSFSDGTYQF 229 (933)
T ss_pred ceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC-cceee------------eccCCccceeeecCCCCccE
Confidence 222222346799999999988763333445678999988655 22221 112344677777777444 4
Q ss_pred EEEE
Q 021036 313 VAMV 316 (318)
Q Consensus 313 l~~~ 316 (318)
++++
T Consensus 230 Ica~ 233 (933)
T KOG2114|consen 230 ICAG 233 (933)
T ss_pred EEec
Confidence 4443
No 281
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.73 E-value=3.8e-06 Score=70.90 Aligned_cols=189 Identities=7% Similarity=-0.049 Sum_probs=121.8
Q ss_pred ccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEE-eeeecCCCCCCCcEEEEEeC
Q 021036 77 QNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSIS-LAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 77 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-~~p~~~~~~~~~~~l~s~~~ 155 (318)
+-..+.+|+.++- +.-|.|.++|.++......+-+-+..... .......+..-+. | +..+|++++..|.
T Consensus 271 ~R~~nsDGkrIvF-q~~GdIylydP~td~lekldI~lpl~rk~---k~~k~~~pskyledf------a~~~Gd~ia~VSR 340 (668)
T COG4946 271 PRNANSDGKRIVF-QNAGDIYLYDPETDSLEKLDIGLPLDRKK---KQPKFVNPSKYLEDF------AVVNGDYIALVSR 340 (668)
T ss_pred ccccCCCCcEEEE-ecCCcEEEeCCCcCcceeeecCCcccccc---ccccccCHHHhhhhh------ccCCCcEEEEEec
Confidence 3345567776554 35688999999875532211110000000 0000011111111 2 2457888888886
Q ss_pred CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC-cEEEeeeccCCCeeeE
Q 021036 156 DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-SFDLWKCDISCNKFDK 234 (318)
Q Consensus 156 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-~i~vw~~~~~~~~~~~ 234 (318)
|...+.+...+-.++. ++...|.-..+. .+++-++.|..|| .+-+| +..+++
T Consensus 341 -GkaFi~~~~~~~~iqv----------------~~~~~VrY~r~~-----~~~e~~vigt~dgD~l~iy--d~~~~e--- 393 (668)
T COG4946 341 -GKAFIMRPWDGYSIQV----------------GKKGGVRYRRIQ-----VDPEGDVIGTNDGDKLGIY--DKDGGE--- 393 (668)
T ss_pred -CcEEEECCCCCeeEEc----------------CCCCceEEEEEc-----cCCcceEEeccCCceEEEE--ecCCce---
Confidence 5667766655433332 123356656665 5677889999999 89999 566664
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEE
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVA 314 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~ 314 (318)
+..+...-+.|.++..+|+|++++.+.....+.+.|+.++....+.-... +-|+..+|+|+++++|
T Consensus 394 ~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~--------------~lItdf~~~~nsr~iA 459 (668)
T COG4946 394 VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY--------------GLITDFDWHPNSRWIA 459 (668)
T ss_pred EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc--------------ceeEEEEEcCCceeEE
Confidence 44556667889999999999999999999999999999988776543333 3789999999999999
Q ss_pred EE
Q 021036 315 MV 316 (318)
Q Consensus 315 ~~ 316 (318)
-+
T Consensus 460 Ya 461 (668)
T COG4946 460 YA 461 (668)
T ss_pred Ee
Confidence 75
No 282
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.71 E-value=3.5e-06 Score=81.65 Aligned_cols=184 Identities=11% Similarity=-0.043 Sum_probs=105.7
Q ss_pred ccCCCC-CccEEEEecCCCcEEEEEccCCccccccccc--cCCceeEEeeeccccccEEEEEeeeecCCCCCCCc-EEEE
Q 021036 77 QNGSSN-WFSILAVGGRSGKVSLWRICVPKCYSVEDCK--VPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV-LLVT 152 (318)
Q Consensus 77 ~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s 152 (318)
++++++ ++.++++.+.++.|++|+..++......... ....+.. .....-...+.|++ +++++ ++++
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~--~~~~~~~~P~GIav-------spdG~~LYVA 757 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSS--GTSTSFAQPSGISL-------SPDLKELYIA 757 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCc--cccccccCccEEEE-------eCCCCEEEEE
Confidence 344444 3577788888899999999875431100000 0000000 00001123467889 78877 5555
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceee-------eeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEV-------VTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
-+.++.|++||+.++.......+........... ..........++++ ++|+++++-..++.|++|
T Consensus 758 Ds~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd-----~dG~LYVADs~N~rIrvi-- 830 (1057)
T PLN02919 758 DSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCA-----KDGQIYVADSYNHKIKKL-- 830 (1057)
T ss_pred ECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEe-----CCCcEEEEECCCCEEEEE--
Confidence 5667999999998765321111000000000000 00011123578888 899988888899999999
Q ss_pred ccCCCeeeEeee-----------eecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 226 DISCNKFDKVGS-----------YNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 226 ~~~~~~~~~~~~-----------~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
+..++....+.. ..+.-.....++++++|+.+++-+.++.|++||+.++..
T Consensus 831 D~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 831 DPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 454544221111 011123467899999999888889999999999988654
No 283
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=4.6e-06 Score=71.67 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=72.7
Q ss_pred ccceeEEEEeeccCCCCceEEEEE--eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC---Cc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD---NF 265 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d---~~ 265 (318)
.++|.++.|+ |++..|+++ -.--++.+| |.+.. ++..+ .+++=.++-|+|.|++|+.++-+ |.
T Consensus 270 ~GPVhdv~W~-----~s~~EF~VvyGfMPAkvtif--nlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~ 337 (566)
T KOG2315|consen 270 EGPVHDVTWS-----PSGREFAVVYGFMPAKVTIF--NLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGD 337 (566)
T ss_pred CCCceEEEEC-----CCCCEEEEEEecccceEEEE--cCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCc
Confidence 4599999999 899776664 466788999 44443 55444 35666789999999998877654 89
Q ss_pred EEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 266 VRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 266 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|-+||+.+.++.....-. ..+-+.|+|||++++|+-
T Consensus 338 mEvwDv~n~K~i~~~~a~----------------~tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKAA----------------NTTVFEWSPDGEYFLTAT 373 (566)
T ss_pred eEEEeccchhhccccccC----------------CceEEEEcCCCcEEEEEe
Confidence 999999886555322222 336789999999999863
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.70 E-value=7.5e-08 Score=77.66 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=88.6
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCC-CCcEE
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSN-PQVLL 150 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~-~~~~l 150 (318)
..+|++..|...+++++.|..+|.|...|++....- .......+ -|...|+++.. -. ++++|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG---------~~~~a~rl-yh~Ssvtslq~-------Lq~s~q~L 314 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG---------NGWCAQRL-YHDSSVTSLQI-------LQFSQQKL 314 (425)
T ss_pred chhHHHHHhcccCCeeEecccCCcEEEEEeeecccC---------CCcceEEE-EcCcchhhhhh-------hccccceE
Confidence 457888888888999999999999999999864210 01122222 47888999887 44 67889
Q ss_pred EEEeCCCcEEEEECCCcce---eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 151 VTGSSDGSVRIWDGYIQEL---QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
++.+.+|+|++||++.-++ +....+|... ....-+-+. +....++++++|...++| .+
T Consensus 315 maS~M~gkikLyD~R~~K~~~~V~qYeGHvN~------------~a~l~~~v~-----~eeg~I~s~GdDcytRiW--sl 375 (425)
T KOG2695|consen 315 MASDMTGKIKLYDLRATKCKKSVMQYEGHVNL------------SAYLPAHVK-----EEEGSIFSVGDDCYTRIW--SL 375 (425)
T ss_pred eeccCcCceeEeeehhhhcccceeeeeccccc------------ccccccccc-----cccceEEEccCeeEEEEE--ec
Confidence 9999999999999997666 6666665431 111122233 556677779999999999 44
Q ss_pred CCCe
Q 021036 228 SCNK 231 (318)
Q Consensus 228 ~~~~ 231 (318)
..+.
T Consensus 376 ~~gh 379 (425)
T KOG2695|consen 376 DSGH 379 (425)
T ss_pred ccCc
Confidence 5554
No 285
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=6.2e-07 Score=79.17 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=144.2
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSG 94 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg 94 (318)
.+...++.|+.||-+++..+.+..--..... .... -..+-...+.+|...|.-+.++...+.|-+...+|
T Consensus 24 ke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~--------snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 24 KESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAA--------SNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred ccCCeEEeccccceeEEEEccccCCcccccc--cccc--------cccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 3455689999999999998876432111110 0000 00111223555666666666666669999999999
Q ss_pred cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee-e
Q 021036 95 KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS-A 173 (318)
Q Consensus 95 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~-~ 173 (318)
.|.+|-+-.+.... . ..-....+-|.+++| ..+|..++..-.||.|.+=.++....... +
T Consensus 94 lIiVWmlykgsW~E-----------E-MiNnRnKSvV~SmsW-------n~dG~kIcIvYeDGavIVGsvdGNRIwgKeL 154 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCE-----------E-MINNRNKSVVVSMSW-------NLDGTKICIVYEDGAVIVGSVDGNRIWGKEL 154 (1189)
T ss_pred eEEEEeeecccHHH-----------H-HhhCcCccEEEEEEE-------cCCCcEEEEEEccCCEEEEeeccceecchhc
Confidence 99999998765421 0 111234567899999 89999998888888887766654321110 0
Q ss_pred cc----cc-----c-------------------cccc----ceeee-----eecccceeEEEEee---ccCCCCceEEEE
Q 021036 174 EA----HC-----V-------------------PFSL----LKEVV-----TVNTVPISVLSLIL---PVQSPRLMLLAV 213 (318)
Q Consensus 174 ~~----~~-----~-------------------~~~~----~~~~~-----~~~~~~v~~l~~~~---~~~~~~~~~l~~ 213 (318)
++ |. . .|.. ...+. ..-...+-.+.|.- ...||+...|++
T Consensus 155 kg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lav 234 (1189)
T KOG2041|consen 155 KGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAV 234 (1189)
T ss_pred chheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEE
Confidence 00 00 0 0000 00000 00111233444431 123467889999
Q ss_pred EeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC---------cEEEEEecCCceeeeecCCC
Q 021036 214 GKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN---------FVRSWIFHGNSLSQVSIPTN 284 (318)
Q Consensus 214 ~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---------~v~iwd~~~~~~~~~~~~~~ 284 (318)
+-.+|.+.+- ...... .++.. .-.-.+..+.|+++|..|+.++.|. .|.+|..-+.-...++...
T Consensus 235 cy~nGr~QiM--R~eND~-~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg- 308 (1189)
T KOG2041|consen 235 CYANGRMQIM--RSENDP-EPVVV--DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPG- 308 (1189)
T ss_pred EEcCceehhh--hhcCCC-CCeEE--ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCC-
Confidence 9999998885 322221 13322 2235688899999999999988652 3444443333333333322
Q ss_pred CCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 285 TPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 285 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
..|++++|-..|..+|.
T Consensus 309 --------------~~It~lsWEg~gLriA~ 325 (1189)
T KOG2041|consen 309 --------------SCITGLSWEGTGLRIAI 325 (1189)
T ss_pred --------------ceeeeeEEcCCceEEEE
Confidence 37888888887766654
No 286
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=8.7e-08 Score=84.59 Aligned_cols=200 Identities=19% Similarity=0.251 Sum_probs=124.6
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEec
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGG 91 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~ 91 (318)
+.+.+...++++|.|-.+..||+.+-.. +... .+.-+.. ...++|+-.. ++.+| .+
T Consensus 122 ~~~q~pdVlatcsvdt~vh~wd~rSp~~-p~ys--~~~w~s~---asqVkwnyk~-----------------p~vla-ss 177 (1081)
T KOG0309|consen 122 FNPQHPDVLATCSVDTYVHAWDMRSPHR-PFYS--TSSWRSA---ASQVKWNYKD-----------------PNVLA-SS 177 (1081)
T ss_pred cCCCCCcceeeccccccceeeeccCCCc-ceee--eeccccc---CceeeecccC-----------------cchhh-hc
Confidence 4455566689999999999999987432 1111 1112222 3348998877 34554 45
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK 171 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 171 (318)
....|++||...|. .++..+++|...|+.++| ....-..+.+++.|++|++||........
T Consensus 178 hg~~i~vwd~r~gs-------------~pl~s~K~~vs~vn~~~f------nr~~~s~~~s~~~d~tvkfw~y~kSt~e~ 238 (1081)
T KOG0309|consen 178 HGNDIFVWDLRKGS-------------TPLCSLKGHVSSVNSIDF------NRFKYSEIMSSSNDGTVKFWDYSKSTTES 238 (1081)
T ss_pred cCCceEEEeccCCC-------------cceEEecccceeeehHHH------hhhhhhhhcccCCCCceeeeccccccccc
Confidence 66789999998764 567788999999999999 33444578999999999999988654332
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCC--ceEEEEEeCCCcEEEeee-------ccCCCeeeEeeeeeccc
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR--LMLLAVGKGSGSFDLWKC-------DISCNKFDKVGSYNAHD 242 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~--~~~l~~~~~dg~i~vw~~-------~~~~~~~~~~~~~~~h~ 242 (318)
...... ..+|.--++. |- |.++.---.+..+.+++. +..+. ..++++|.||.
T Consensus 239 ~~~vtt-------------~~piw~~r~~-----Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~-~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 239 KRTVTT-------------NFPIWRGRYL-----PFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL-NTPVHTFVGHD 299 (1081)
T ss_pred ceeccc-------------cCcceecccc-----ccCceeEeccccCCeeeeeccccchhhhhccccC-CcceeeecCcc
Confidence 221111 1133333332 22 222221111223333321 22222 24899999999
Q ss_pred CceeEEEEcCCC--------C--EEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDG--------C--CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~--------~--~l~s~~~d~~v~iwd~~~ 273 (318)
..|....|-..+ + .|+|=+.|.++++|-+..
T Consensus 300 D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 300 DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred hHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 988766664322 2 689999999999998753
No 287
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.67 E-value=6.4e-07 Score=81.07 Aligned_cols=186 Identities=16% Similarity=0.124 Sum_probs=126.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGK 95 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~ 95 (318)
+.+.++-|+-...+...|+.+.+..+...... .+ +..+.. . ++++++|...|+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a---~~----v~imR~--N------------------nr~lf~G~t~G~ 198 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSA---SG----VTIMRY--N------------------NRNLFCGDTRGT 198 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccC---Cc----eEEEEe--c------------------CcEEEeecccce
Confidence 45556666666667777887766544443211 11 111222 2 378999999999
Q ss_pred EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---------CCcEEEEECCC
Q 021036 96 VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---------DGSVRIWDGYI 166 (318)
Q Consensus 96 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---------d~~v~iwd~~~ 166 (318)
|.+-|.++ .+.+.++..|++.|.++.. .|++|++|+. |..|++||++.
T Consensus 199 V~LrD~~s--------------~~~iht~~aHs~siSDfDv---------~GNlLitCG~S~R~~~l~~D~FvkVYDLRm 255 (1118)
T KOG1275|consen 199 VFLRDPNS--------------FETIHTFDAHSGSISDFDV---------QGNLLITCGYSMRRYNLAMDPFVKVYDLRM 255 (1118)
T ss_pred EEeecCCc--------------Cceeeeeeccccceeeeec---------cCCeEEEeecccccccccccchhhhhhhhh
Confidence 99999988 5678899999999998776 6788999873 55689999998
Q ss_pred cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeec-cCCCeeeEeeeeecccCce
Q 021036 167 QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCD-ISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~-~~~~~~~~~~~~~~h~~~v 245 (318)
.+.+..+..+.. ..-+.|. |.-...+++++..|...+-|.- ...... .+..+......+
T Consensus 256 mral~PI~~~~~---------------P~flrf~----Psl~t~~~V~S~sGq~q~vd~~~lsNP~~-~~~~v~p~~s~i 315 (1118)
T KOG1275|consen 256 MRALSPIQFPYG---------------PQFLRFH----PSLTTRLAVTSQSGQFQFVDTATLSNPPA-GVKMVNPNGSGI 315 (1118)
T ss_pred hhccCCcccccC---------------chhhhhc----ccccceEEEEecccceeeccccccCCCcc-ceeEEccCCCcc
Confidence 776655443332 1345565 2335678888999999887410 111110 111222234558
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++++++.|..|+.|..+|.|.+|.-
T Consensus 316 ~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 316 SAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeEEecCCCceEEEecccCcEeeecC
Confidence 99999999999999999999999973
No 288
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=0.00012 Score=59.57 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=104.5
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--c-ccccEEEEEeeeecCCCCCCCcEEEEEeCC------
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--A-HNSWITSISLAVLSSDSSNPQVLLVTGSSD------ 156 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d------ 156 (318)
.|+.+...+ +.++|..+++. +.+.... . .....+.+++ .++|++.++....
T Consensus 53 ~l~v~~~~~-~~~~d~~~g~~------------~~~~~~~~~~~~~~~~ND~~v-------d~~G~ly~t~~~~~~~~~~ 112 (246)
T PF08450_consen 53 RLYVADSGG-IAVVDPDTGKV------------TVLADLPDGGVPFNRPNDVAV-------DPDGNLYVTDSGGGGASGI 112 (246)
T ss_dssp EEEEEETTC-EEEEETTTTEE------------EEEEEEETTCSCTEEEEEEEE--------TTS-EEEEEECCBCTTCG
T ss_pred EEEEEEcCc-eEEEecCCCcE------------EEEeeccCCCcccCCCceEEE-------cCCCCEEEEecCCCccccc
Confidence 444444444 55568887652 2333332 1 3456889999 8999988876644
Q ss_pred --CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEE-EEeCCCcEEEeeeccCCCeee
Q 021036 157 --GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA-VGKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 157 --~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~ 233 (318)
|.|..++.. ++....... -...+.|+|+ |+++.|+ +-+..+.|..|+++.......
T Consensus 113 ~~g~v~~~~~~-~~~~~~~~~---------------~~~pNGi~~s-----~dg~~lyv~ds~~~~i~~~~~~~~~~~~~ 171 (246)
T PF08450_consen 113 DPGSVYRIDPD-GKVTVVADG---------------LGFPNGIAFS-----PDGKTLYVADSFNGRIWRFDLDADGGELS 171 (246)
T ss_dssp GSEEEEEEETT-SEEEEEEEE---------------ESSEEEEEEE-----TTSSEEEEEETTTTEEEEEEEETTTCCEE
T ss_pred cccceEEECCC-CeEEEEecC---------------cccccceEEC-----CcchheeecccccceeEEEecccccccee
Confidence 456666666 443222211 1246799999 9998665 556788888887765555332
Q ss_pred Eeeee---ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEc-CC
Q 021036 234 KVGSY---NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVS-PG 309 (318)
Q Consensus 234 ~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s-p~ 309 (318)
....+ ....+..-.++++.+|++.++.-..+.|.+++.....+..+..... .+++++|. ++
T Consensus 172 ~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~---------------~~t~~~fgg~~ 236 (246)
T PF08450_consen 172 NRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP---------------RPTNCAFGGPD 236 (246)
T ss_dssp EEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS---------------SEEEEEEESTT
T ss_pred eeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC---------------CEEEEEEECCC
Confidence 22222 2222346789999999988887788999999988444444443322 67899994 55
Q ss_pred CcE
Q 021036 310 NLV 312 (318)
Q Consensus 310 ~~~ 312 (318)
...
T Consensus 237 ~~~ 239 (246)
T PF08450_consen 237 GKT 239 (246)
T ss_dssp SSE
T ss_pred CCE
Confidence 443
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=2.3e-07 Score=82.01 Aligned_cols=150 Identities=18% Similarity=0.209 Sum_probs=106.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
.+-++......-.+|++..... ....-.+.+|...|+.+.|+| .....+++++.|-.+..||+
T Consensus 82 ~~wiVsts~qkaiiwnlA~ss~-----------~aIef~lhghsraitd~n~~~------q~pdVlatcsvdt~vh~wd~ 144 (1081)
T KOG0309|consen 82 PYWIVSTSNQKAIIWNLAKSSS-----------NAIEFVLHGHSRAITDINFNP------QHPDVLATCSVDTYVHAWDM 144 (1081)
T ss_pred ceeEEecCcchhhhhhhhcCCc-----------cceEEEEecCccceeccccCC------CCCcceeeccccccceeeec
Confidence 4556666667778899975431 122234578999999999943 34467999999999999999
Q ss_pred CCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 165 YIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 165 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
++... +...... ......+.|++ .++..+|+ +....|.+|| .+.+.- ++..+++|..
T Consensus 145 rSp~~p~ys~~~w--------------~s~asqVkwny----k~p~vlas-shg~~i~vwd--~r~gs~-pl~s~K~~vs 202 (1081)
T KOG0309|consen 145 RSPHRPFYSTSSW--------------RSAASQVKWNY----KDPNVLAS-SHGNDIFVWD--LRKGST-PLCSLKGHVS 202 (1081)
T ss_pred cCCCcceeeeecc--------------cccCceeeecc----cCcchhhh-ccCCceEEEe--ccCCCc-ceEEecccce
Confidence 97542 2222211 12456778884 56666655 4577799995 444432 7788999999
Q ss_pred ceeEEEEcCC-CCEEEEecCCCcEEEEEecC
Q 021036 244 VVTGLAWAFD-GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 244 ~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~ 273 (318)
.|..++|... ...+.+++.|++|+.||...
T Consensus 203 ~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 203 SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSK 233 (1081)
T ss_pred eeehHHHhhhhhhhhcccCCCCceeeecccc
Confidence 9999999874 44788999999999999865
No 290
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.64 E-value=3.1e-07 Score=73.31 Aligned_cols=231 Identities=13% Similarity=0.110 Sum_probs=136.5
Q ss_pred CCCCCccceEEeeCCCceeEeecCCCCCCCc--eecc---hhccccccccc------------eeeeecccccC-CCCcc
Q 021036 12 MKDSNTHPTVAASKSKGNSITKIPSNCCLPL--ITAD---QYASRSAMLHS------------LAVAWSPVLRL-SSKKY 73 (318)
Q Consensus 12 ~~~~~~~~~~t~s~d~~i~iwd~~~~~~~~~--~~~~---~~~~~~~~~~~------------~~~~w~p~~~~-~~~~~ 73 (318)
+++.+....+....|+++++|.+........ -... ..+..+.+... .-++--|.... ..|.+
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 5666777889999999999998765321100 0000 00011111000 01233333222 36888
Q ss_pred cccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-----cccEEEEEeeeecCCCCCCCc
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-----NSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~~~~~~ 148 (318)
.+.++.+..+...++++ .|-.|.+|+++-... .-.+..++.| ..-|++..|+| ....
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~-----------sFnIVDiKP~nmeeLteVItSaeFhp------~~cn 235 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDG-----------SFNIVDIKPHNMEELTEVITSAEFHP------EMCN 235 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCC-----------ceEEEeccCccHHHHHHHHhhcccCH------hHcc
Confidence 99999999999888876 578899999874321 0112233333 34578888832 2335
Q ss_pred EEEEEeCCCcEEEEECCCcceee----eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQK----SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
.+.-++..|.|++-|+++..... .+.....+.. ..........|+.+.|+ ++|+++++-+ -.+|++||
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~--~~ff~eivsSISD~kFs-----~ngryIlsRd-yltvkiwD 307 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVD--VDFFEEIVSSISDFKFS-----DNGRYILSRD-YLTVKIWD 307 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCccc--chhHHHHhhhhcceEEc-----CCCcEEEEec-cceEEEEe
Confidence 67777888999999998543211 1111100000 01112233478899999 9999998876 56899997
Q ss_pred eccCCCeeeEeeeeecc------------cCce---eEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 225 CDISCNKFDKVGSYNAH------------DQVV---TGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 225 ~~~~~~~~~~~~~~~~h------------~~~v---~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.++... ++.+..-| ...| ..+.|+-|.+.+++|+......+|-+
T Consensus 308 vnm~k~---pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 308 VNMAKN---PIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred cccccC---CceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 665443 44444322 1223 24678888888888888877777764
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.64 E-value=4.5e-05 Score=62.28 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=124.2
Q ss_pred ccceEEeeCCCce-eEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-----
Q 021036 17 THPTVAASKSKGN-SITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG----- 90 (318)
Q Consensus 17 ~~~~~t~s~d~~i-~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g----- 90 (318)
...++.+..-|+. .+||..+++..+.+.... .+..+-. -.|+|++ ++|++.
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~--gRHFyGH---g~fs~dG------------------~~LytTEnd~~ 73 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPP--GRHFYGH---GVFSPDG------------------RLLYTTENDYE 73 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCC--CCEEecC---EEEcCCC------------------CEEEEeccccC
Confidence 3445666666654 667998888766655422 1222222 3455554 888885
Q ss_pred cCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe----------------
Q 021036 91 GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS---------------- 154 (318)
Q Consensus 91 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~---------------- 154 (318)
...|.|-|||...+ .+.+.++..|.-.-..+.+ .++|+.|+.+-
T Consensus 74 ~g~G~IgVyd~~~~-------------~~ri~E~~s~GIGPHel~l-------~pDG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 74 TGRGVIGVYDAARG-------------YRRIGEFPSHGIGPHELLL-------MPDGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CCcEEEEEEECcCC-------------cEEEeEecCCCcChhhEEE-------cCCCCEEEEEcCCCccCcccCceecCh
Confidence 45788999999832 5677788777666678888 78887777652
Q ss_pred --CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-------EEEeee
Q 021036 155 --SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-------FDLWKC 225 (318)
Q Consensus 155 --~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-------i~vw~~ 225 (318)
.+.++...|..+|+.+....... ..|...+..|++. ++|..++..-..|. +.++
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~----------~~~~lSiRHLa~~-----~~G~V~~a~Q~qg~~~~~~PLva~~-- 196 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPP----------DLHQLSIRHLAVD-----GDGTVAFAMQYQGDPGDAPPLVALH-- 196 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCc----------cccccceeeEEec-----CCCcEEEEEecCCCCCccCCeEEEE--
Confidence 22234444555555444322111 2345578899998 77766655543332 3333
Q ss_pred ccCCCeeeEee----eeecccCceeEEEEcCCCCEEE-EecCCCcEEEEEecCCceeeeecCC
Q 021036 226 DISCNKFDKVG----SYNAHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 226 ~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+. ...++.+. ....-.+.+-+|++++++.+++ |+-..+.+.+||..++.+......+
T Consensus 197 ~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~ 258 (305)
T PF07433_consen 197 RR-GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP 258 (305)
T ss_pred cC-CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC
Confidence 11 11111111 0123346788999999998764 5556678999999998877654443
No 292
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.61 E-value=5.5e-07 Score=70.06 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=58.7
Q ss_pred ccccCCCCC-ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 75 VPQNGSSNW-FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 75 v~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
|++++..|. .+++++|+.||.+-+||.+... .+...++.|..+|+.+-| ++.+++.|+++
T Consensus 182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------------~p~S~l~ahk~~i~eV~F------Hpk~p~~Lft~ 242 (319)
T KOG4714|consen 182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------------MPVSLLKAHKAEIWEVHF------HPKNPEHLFTC 242 (319)
T ss_pred chhhhCCcccccEEEEecCCCeEEEEEccccc-------------chHHHHHHhhhhhhheec------cCCCchheeEe
Confidence 555555553 5788999999999999998753 245567899999999999 45566779999
Q ss_pred eCCCcEEEEECCC
Q 021036 154 SSDGSVRIWDGYI 166 (318)
Q Consensus 154 ~~d~~v~iwd~~~ 166 (318)
++||.+..||..+
T Consensus 243 sedGslw~wdas~ 255 (319)
T KOG4714|consen 243 SEDGSLWHWDAST 255 (319)
T ss_pred cCCCcEEEEcCCC
Confidence 9999999999764
No 293
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.60 E-value=4.6e-05 Score=64.31 Aligned_cols=231 Identities=9% Similarity=-0.054 Sum_probs=124.6
Q ss_pred CCCCCccceEEee---------CCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 12 MKDSNTHPTVAAS---------KSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 12 ~~~~~~~~~~t~s---------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
+.+.+....++.+ .+..|.+||..+.+.+..+....-++-........++.+|++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dg---------------- 116 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDN---------------- 116 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCC----------------
Confidence 3344444556666 789999999999988777765321110000111125566665
Q ss_pred CccEEEEec-C-CCcEEEEEccCCcccccccccc---------------CCceeEEeeeccccc--cEEEEE-eee----
Q 021036 83 WFSILAVGG-R-SGKVSLWRICVPKCYSVEDCKV---------------PTTAVLIGLFQAHNS--WITSIS-LAV---- 138 (318)
Q Consensus 83 ~~~~l~~g~-~-dg~i~iw~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~h~~--~v~~~~-~~p---- 138 (318)
++|++.. . +..|.+.|+.+++.+.....+. -.++.....-..-.+ .+.... |.+
T Consensus 117 --k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~ 194 (352)
T TIGR02658 117 --KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEY 194 (352)
T ss_pred --CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccc
Confidence 7777655 3 6888899998876543211000 001111110000000 011100 101
Q ss_pred --ecC-CCCCCCcEEEEEeCCCcEEEEECCCccee-----eeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 139 --LSS-DSSNPQVLLVTGSSDGSVRIWDGYIQELQ-----KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 139 --~~~-~~~~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
.++ -...+|.++..... |+|.+.|+...... ..+..... ...-....+.-++++ ++++.
T Consensus 195 v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~-------~~~wrP~g~q~ia~~-----~dg~~ 261 (352)
T TIGR02658 195 LINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEK-------ADGWRPGGWQQVAYH-----RARDR 261 (352)
T ss_pred cccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeecccccc-------ccccCCCcceeEEEc-----CCCCE
Confidence 000 01236777776666 99999997543322 11111000 000112244458898 88888
Q ss_pred EEEEeC--------C--CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC-EEEEec-CCCcEEEEEecCCceee
Q 021036 211 LAVGKG--------S--GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC-CLYSCS-QDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 211 l~~~~~--------d--g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~~-~d~~v~iwd~~~~~~~~ 278 (318)
+++... + +.|.++ |..+.+ .+..+.. ...+..++++||++ +|++.. .++.|.++|..+++...
T Consensus 262 lyV~~~~~~~~thk~~~~~V~Vi--D~~t~k--vi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 262 IYLLADQRAKWTHKTASRFLFVV--DAKTGK--RLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EEEEecCCccccccCCCCEEEEE--ECCCCe--EEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 877431 1 345555 777776 5555543 45788999999999 777665 67889999998876554
No 294
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=2.5e-07 Score=77.21 Aligned_cols=210 Identities=14% Similarity=0.132 Sum_probs=139.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC-CCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS-DGSVRIWD 163 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~-d~~v~iwd 163 (318)
+++.+++.||.++.|.-..-.- .+.+..+..|...|.+++. +-++.++.|.+. |..++++|
T Consensus 21 ~fiiqASlDGh~KFWkKs~isG-----------vEfVKhFraHL~~I~sl~~-------S~dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 21 KFIIQASLDGHKKFWKKSRISG-----------VEFVKHFRAHLGVILSLAV-------SYDGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred heEEeeecchhhhhcCCCCccc-----------eeehhhhHHHHHHHHhhhc-------cccceeEeeccCcccceeEEE
Confidence 7999999999999997654121 3466778889999999998 889989999777 99999999
Q ss_pred CCCcceeeeecc------------cccc----------------------cccceeeeeecccceeEEEEeeccCCCCce
Q 021036 164 GYIQELQKSAEA------------HCVP----------------------FSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 164 ~~~~~~~~~~~~------------~~~~----------------------~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
+.+-..+.-++. ...+ ..........|..+|..+.+. +.++
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~-----qa~D 157 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYN-----QAGD 157 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEee-----cccc
Confidence 875433211110 0000 011113445688899999999 8999
Q ss_pred EEEEEeCCCcEEEeeeccCCCeee-----------EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceee
Q 021036 210 LLAVGKGSGSFDLWKCDISCNKFD-----------KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 210 ~l~~~~~dg~i~vw~~~~~~~~~~-----------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.+....|.|.-|..+..-+.++ .+..+........++.|+|+|..+.+-+.|..|++++.+++.+.+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 999999999999995431000000 011122234566899999999999999999999999999877643
Q ss_pred eecC--------CCCCC-c---------cccccCCCcc-eeeeEEEEcCCCcEEEEEe
Q 021036 279 VSIP--------TNTPG-L---------QSCTDLPDAF-VSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 279 ~~~~--------~~~~~-~---------~~~~~~~~h~-~~v~~v~~sp~~~~l~~~~ 317 (318)
..-. +..++ + +...++.-|. ..-..+.|...|.+|+-|.
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t 295 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT 295 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec
Confidence 2211 11110 1 1112222332 3345778888888887664
No 295
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.58 E-value=8.8e-06 Score=77.62 Aligned_cols=199 Identities=13% Similarity=0.050 Sum_probs=123.6
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEE----EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLW----RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV 148 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~ 148 (318)
..|.++.+-++...++.+..+|.|.+. +..+.. +.....-...|.+++| +|+++
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~---------------~E~VG~vd~GI~a~~W-------SPD~E 133 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE---------------IEIVGSVDSGILAASW-------SPDEE 133 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce---------------eEEEEEEcCcEEEEEE-------CCCcC
Confidence 456667777777888889999999999 444322 2223334678999999 99999
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeeccccccc------cc-----------------------------ceeeeeecccc
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPF------SL-----------------------------LKEVVTVNTVP 193 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~------~~-----------------------------~~~~~~~~~~~ 193 (318)
+|+..+.++++.+.+- +...+.....+...+ ++ ...... ....
T Consensus 134 lla~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCC
Confidence 9999999999988753 222222211111100 00 000111 2334
Q ss_pred eeEEEEeeccCCCCceEEEEEeC---C---CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC---CC
Q 021036 194 ISVLSLILPVQSPRLMLLAVGKG---S---GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ---DN 264 (318)
Q Consensus 194 v~~l~~~~~~~~~~~~~l~~~~~---d---g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~---d~ 264 (318)
-..|+|. .||.+||+.+- . ..++||+ . .+.. ..+-+.-.+--.+++|.|.|.+||+... ..
T Consensus 212 ~~~ISWR-----GDG~yFAVss~~~~~~~~R~iRVy~--R-eG~L--~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~ 281 (928)
T PF04762_consen 212 RVRISWR-----GDGEYFAVSSVEPETGSRRVIRVYS--R-EGEL--QSTSEPVDGLEGALSWRPSGNLIASSQRLPDRH 281 (928)
T ss_pred ceEEEEC-----CCCcEEEEEEEEcCCCceeEEEEEC--C-CceE--EeccccCCCccCCccCCCCCCEEEEEEEcCCCc
Confidence 4577787 99999999874 3 4689993 2 3432 1121222222346899999999998754 45
Q ss_pred cEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 265 FVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 265 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.|.+|..++-....+..... .....|..++|++|+..||..
T Consensus 282 ~VvFfErNGLrhgeF~l~~~-----------~~~~~v~~l~Wn~ds~iLAv~ 322 (928)
T PF04762_consen 282 DVVFFERNGLRHGEFTLRFD-----------PEEEKVIELAWNSDSEILAVW 322 (928)
T ss_pred EEEEEecCCcEeeeEecCCC-----------CCCceeeEEEECCCCCEEEEE
Confidence 67788766533333332210 122488999999999999873
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.58 E-value=1.4e-06 Score=71.74 Aligned_cols=100 Identities=20% Similarity=0.239 Sum_probs=73.7
Q ss_pred EecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 89 VGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 89 ~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
..++...+.+|....+. ...+-+|-..+..++| ++++++++++..|..|++-....--
T Consensus 127 kagD~~~~di~s~~~~~---------------~~~~lGhvSml~dVav-------S~D~~~IitaDRDEkIRvs~ypa~f 184 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGR---------------CEPILGHVSMLLDVAV-------SPDDQFIITADRDEKIRVSRYPATF 184 (390)
T ss_pred ecCCceeeeeecccccC---------------cchhhhhhhhhheeee-------cCCCCEEEEecCCceEEEEecCccc
Confidence 34455556666655432 2346799999999999 9999999999999999998776543
Q ss_pred eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe
Q 021036 169 LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK 231 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~ 231 (318)
.+..+. -+|..-|..+++- ++..|++|+.|+++++| |.++++
T Consensus 185 ~Iesfc-------------lGH~eFVS~isl~------~~~~LlS~sGD~tlr~W--d~~sgk 226 (390)
T KOG3914|consen 185 VIESFC-------------LGHKEFVSTISLT------DNYLLLSGSGDKTLRLW--DITSGK 226 (390)
T ss_pred chhhhc-------------cccHhheeeeeec------cCceeeecCCCCcEEEE--ecccCC
Confidence 333332 3456688888885 56779999999999999 455554
No 297
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.55 E-value=6.1e-05 Score=65.73 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=60.2
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
....+.+++++ |+.+.|+.|+.||.|.+||. ..+. ..+....-.++.++|+|+|.++++|+..|.+.+|
T Consensus 258 L~s~v~~ca~s-----p~E~kLvlGC~DgSiiLyD~--~~~~----t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 258 LPSQVICCARS-----PSEDKLVLGCEDGSIILYDT--TRGV----TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred cCCcceEEecC-----cccceEEEEecCCeEEEEEc--CCCe----eeeeeecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 45578899999 99999999999999999953 3332 2233344567889999999999999999999999
Q ss_pred EecCCc
Q 021036 270 IFHGNS 275 (318)
Q Consensus 270 d~~~~~ 275 (318)
|+.-..
T Consensus 327 D~ALsp 332 (545)
T PF11768_consen 327 DMALSP 332 (545)
T ss_pred EeecCc
Confidence 997543
No 298
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.55 E-value=8e-06 Score=69.50 Aligned_cols=181 Identities=17% Similarity=0.192 Sum_probs=116.1
Q ss_pred eeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEe-----------c
Q 021036 23 ASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVG-----------G 91 (318)
Q Consensus 23 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g-----------~ 91 (318)
...+..+++|.++.++.+....... .....+.|++.+ ++|+.- -
T Consensus 198 ~~kpa~~~i~sIp~~s~l~tk~lfk-------~~~~qLkW~~~g------------------~~ll~l~~t~~ksnKsyf 252 (561)
T COG5354 198 LNKPAMVRILSIPKNSVLVTKNLFK-------VSGVQLKWQVLG------------------KYLLVLVMTHTKSNKSYF 252 (561)
T ss_pred CCCCcEEEEEEccCCCeeeeeeeEe-------ecccEEEEecCC------------------ceEEEEEEEeeeccccee
Confidence 4567788888888665544433321 113348899887 444331 1
Q ss_pred CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe--CCCcEEEEECCCcce
Q 021036 92 RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS--SDGSVRIWDGYIQEL 169 (318)
Q Consensus 92 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~--~d~~v~iwd~~~~~~ 169 (318)
....+.|+++.... +.....-.++|...+| .|.++.|++.+ .+..+.++|++.. .
T Consensus 253 gesnLyl~~~~e~~---------------i~V~~~~~~pVhdf~W-------~p~S~~F~vi~g~~pa~~s~~~lr~N-l 309 (561)
T COG5354 253 GESNLYLLRITERS---------------IPVEKDLKDPVHDFTW-------EPLSSRFAVISGYMPASVSVFDLRGN-L 309 (561)
T ss_pred ccceEEEEeecccc---------------cceeccccccceeeee-------cccCCceeEEecccccceeecccccc-e
Confidence 12457777776422 1222245789999999 77777776655 6789999999865 3
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CCcEEEeeeccCCCeeeEeeeeecccCcee
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SGSFDLWKCDISCNKFDKVGSYNAHDQVVT 246 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~ 246 (318)
...+.. .+-+.+.|+ |.+++++.++. .|.|.+| +... ++..+..+.+-.. +
T Consensus 310 ~~~~Pe----------------~~rNT~~fs-----p~~r~il~agF~nl~gni~i~--~~~~-rf~~~~~~~~~n~--s 363 (561)
T COG5354 310 RFYFPE----------------QKRNTIFFS-----PHERYILFAGFDNLQGNIEIF--DPAG-RFKVAGAFNGLNT--S 363 (561)
T ss_pred EEecCC----------------ccccccccc-----CcccEEEEecCCccccceEEe--ccCC-ceEEEEEeecCCc--e
Confidence 332221 134567788 89999998775 4668999 4444 3335546655433 4
Q ss_pred EEEEcCCCCEEEEec------CCCcEEEEEecCCcee
Q 021036 247 GLAWAFDGCCLYSCS------QDNFVRSWIFHGNSLS 277 (318)
Q Consensus 247 ~~~~~~~~~~l~s~~------~d~~v~iwd~~~~~~~ 277 (318)
-..|+|++.++.+.. .|..+.|||+.+....
T Consensus 364 ~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f 400 (561)
T COG5354 364 YCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF 400 (561)
T ss_pred EeeccCCceEEEecCCCcccccCcceEEEEecCchhh
Confidence 468999999887653 5789999999875443
No 299
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.52 E-value=4.2e-05 Score=66.93 Aligned_cols=141 Identities=12% Similarity=0.010 Sum_probs=86.3
Q ss_pred cEEEEEeeeecCCCCCCCcE-EEEEeC---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 130 WITSISLAVLSSDSSNPQVL-LVTGSS---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~-l~s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.+....| +|+|+. ++..+. +..|.++|+.+++....... ........|+
T Consensus 189 ~~~~p~w-------SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~---------------~g~~~~~~~S----- 241 (419)
T PRK04043 189 LNIFPKW-------ANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASS---------------QGMLVVSDVS----- 241 (419)
T ss_pred CeEeEEE-------CCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecC---------------CCcEEeeEEC-----
Confidence 6778999 899974 554443 35688889988765443321 1133456688
Q ss_pred CCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CC--cEEEEEecCCceeeeec
Q 021036 206 PRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DN--FVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 206 ~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~--~v~iwd~~~~~~~~~~~ 281 (318)
|||+.++ +.+.++.-.+|-++..++..+++. .+........|+|||+.|+-.+. .+ .|.+.|+.++...++..
T Consensus 242 PDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT---~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 242 KDGSKLLLTMAPKGQPDIYLYDTNTKTLTQIT---NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred CCCCEEEEEEccCCCcEEEEEECCCCcEEEcc---cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 8997555 444455545554466666544433 23322345679999987665543 33 57777887777655443
Q ss_pred CCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
... ....|+|||++|+...
T Consensus 319 ~g~-----------------~~~~~SPDG~~Ia~~~ 337 (419)
T PRK04043 319 HGK-----------------NNSSVSTYKNYIVYSS 337 (419)
T ss_pred CCC-----------------cCceECCCCCEEEEEE
Confidence 211 1248999999887653
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.51 E-value=3.2e-06 Score=76.68 Aligned_cols=173 Identities=16% Similarity=0.057 Sum_probs=119.2
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
++..++.|+....+..+|+++.+ ..+...-....|.-++. +++++.+|...|+|.+-
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~--------------e~r~~~v~a~~v~imR~---------Nnr~lf~G~t~G~V~Lr 202 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEK--------------ETRTTNVSASGVTIMRY---------NNRNLFCGDTRGTVFLR 202 (1118)
T ss_pred CCcceeecchhhheeeeecccce--------------eeeeeeccCCceEEEEe---------cCcEEEeecccceEEee
Confidence 34566667777777778887633 33443333445888877 67889999999999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---------CCcEEEeeeccCCCeee
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---------SGSFDLWKCDISCNKFD 233 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~ 233 (318)
|.++.+.++++..|.. .|.++.. .|++|++++. |..|+|| |++.-+
T Consensus 203 D~~s~~~iht~~aHs~--------------siSDfDv-------~GNlLitCG~S~R~~~l~~D~FvkVY--DLRmmr-- 257 (1118)
T KOG1275|consen 203 DPNSFETIHTFDAHSG--------------SISDFDV-------QGNLLITCGYSMRRYNLAMDPFVKVY--DLRMMR-- 257 (1118)
T ss_pred cCCcCceeeeeecccc--------------ceeeeec-------cCCeEEEeecccccccccccchhhhh--hhhhhh--
Confidence 9999999998877664 6665555 4788888873 5668899 454433
Q ss_pred EeeeeecccCceeEEEEcCC-CCEEEEecCCCcEEEEEe---cCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCC
Q 021036 234 KVGSYNAHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIF---HGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPG 309 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~ 309 (318)
.+.-+.-+-++ .-+.|.|. ...++.++.-|...+-|. .+........++.+. .+.++.++++
T Consensus 258 al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s-------------~i~~fDiSsn 323 (1118)
T KOG1275|consen 258 ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGS-------------GISAFDISSN 323 (1118)
T ss_pred ccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCC-------------cceeEEecCC
Confidence 22222222222 45778886 457888899999999994 333334444555543 5789999999
Q ss_pred CcEEEEEe
Q 021036 310 NLVVAMVQ 317 (318)
Q Consensus 310 ~~~l~~~~ 317 (318)
|..||.|.
T Consensus 324 ~~alafgd 331 (1118)
T KOG1275|consen 324 GDALAFGD 331 (1118)
T ss_pred CceEEEec
Confidence 99998774
No 301
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=6e-06 Score=73.79 Aligned_cols=152 Identities=20% Similarity=0.199 Sum_probs=108.0
Q ss_pred EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCC---C-C-CCcEEEEEeCCCcEE
Q 021036 86 ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDS---S-N-PQVLLVTGSSDGSVR 160 (318)
Q Consensus 86 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~---~-~-~~~~l~s~~~d~~v~ 160 (318)
+||-|+.. .|.+-|..+ .+.++.+.-|...|+.++|.|..... + + ..-+|+++...|.|.
T Consensus 28 LiAygshs-lV~VVDs~s--------------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIi 92 (1062)
T KOG1912|consen 28 LIAYGSHS-LVSVVDSRS--------------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRII 92 (1062)
T ss_pred eEEEecCc-eEEEEehhh--------------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEE
Confidence 77877654 577888876 56778888999999999998875321 1 1 234677777889999
Q ss_pred EEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 161 IWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 161 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
+||...+..+..+..+.. ++..++|-+.. ++. .+|+.-....++.+| +..+++ ......
T Consensus 93 l~d~~~~s~~~~l~~~~~--------------~~qdl~W~~~r--d~Srd~LlaIh~ss~lvLw--ntdtG~--k~Wk~~ 152 (1062)
T KOG1912|consen 93 LVDFVLASVINWLSHSND--------------SVQDLCWVPAR--DDSRDVLLAIHGSSTLVLW--NTDTGE--KFWKYD 152 (1062)
T ss_pred EEEehhhhhhhhhcCCCc--------------chhheeeeecc--CcchheeEEecCCcEEEEE--EccCCc--eeeccc
Confidence 999998876666654443 67888886322 233 567777778899999 455665 555555
Q ss_pred cccCceeEEEEcC-CCCEEEEecCCCcEEEEEec
Q 021036 240 AHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 240 ~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~ 272 (318)
.......|+.++| |.+.+..-+..|.+.+.+.-
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l 186 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDL 186 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEecc
Confidence 5566778899999 45566666667887777654
No 302
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.41 E-value=5.1e-05 Score=68.11 Aligned_cols=156 Identities=16% Similarity=0.119 Sum_probs=104.4
Q ss_pred eEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEE
Q 021036 20 TVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLW 99 (318)
Q Consensus 20 ~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw 99 (318)
++-||.+ -|.+-|..+-+.++.+.. |+.. +..+.|.|...-.. -...+...-+||++...|.|.+|
T Consensus 29 iAygshs-lV~VVDs~s~q~iqsie~----h~s~---V~~VrWap~~~p~~------llS~~~~~lliAsaD~~GrIil~ 94 (1062)
T KOG1912|consen 29 IAYGSHS-LVSVVDSRSLQLIQSIEL----HQSA---VTSVRWAPAPSPRD------LLSPSSSQLLIASADISGRIILV 94 (1062)
T ss_pred EEEecCc-eEEEEehhhhhhhhcccc----Cccc---eeEEEeccCCCchh------ccCccccceeEEeccccCcEEEE
Confidence 3444443 577778888887777766 4444 45599999761111 11111123578899999999999
Q ss_pred EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccc
Q 021036 100 RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVP 179 (318)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 179 (318)
|...+ ..+..+..|.+++..++|-|...+ ..+.|+.-....++.+|+..+|+..........
T Consensus 95 d~~~~--------------s~~~~l~~~~~~~qdl~W~~~rd~---Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~- 156 (1062)
T KOG1912|consen 95 DFVLA--------------SVINWLSHSNDSVQDLCWVPARDD---SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE- 156 (1062)
T ss_pred Eehhh--------------hhhhhhcCCCcchhheeeeeccCc---chheeEEecCCcEEEEEEccCCceeeccccCCc-
Confidence 99874 344567788999999999776532 235677777778999999999998877654332
Q ss_pred cccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 180 FSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 180 ~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
...|+.++ |-+.+.|..-+..|.+-+-+
T Consensus 157 -------------iLs~f~~D----Pfd~rh~~~l~s~g~vl~~~ 184 (1062)
T KOG1912|consen 157 -------------ILSCFRVD----PFDSRHFCVLGSKGFVLSCK 184 (1062)
T ss_pred -------------ceeeeeeC----CCCcceEEEEccCceEEEEe
Confidence 45556665 45666666666666666553
No 303
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.38 E-value=5.7e-05 Score=64.51 Aligned_cols=57 Identities=7% Similarity=-0.096 Sum_probs=38.8
Q ss_pred ceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 244 VVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 244 ~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.=..+.|+|.+++++.++-| |.+-+||..++....-..... ...-+.|+||++++.+
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~---------------n~s~~~wspd~qF~~~ 376 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL---------------NTSYCDWSPDGQFYDT 376 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC---------------CceEeeccCCceEEEe
Confidence 33567899999999987765 789999988765543222221 2355678888887655
No 304
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=3.5e-05 Score=66.46 Aligned_cols=67 Identities=27% Similarity=0.276 Sum_probs=49.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS--------- 155 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~--------- 155 (318)
.||++-...| |.+|--.+ ...++.+ .| ..|.-+.| +|+.+||+|=+.
T Consensus 223 TYL~t~Hk~G-I~lWGG~~--------------f~r~~RF-~H-p~Vq~idf-------SP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 223 TYLVTFHKQG-IALWGGES--------------FDRIQRF-YH-PGVQFIDF-------SPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eEEEEEeccc-eeeecCcc--------------HHHHHhc-cC-CCceeeec-------CCccceEEEecCCccccCccc
Confidence 9999988776 88896554 2223333 23 35788999 899999999652
Q ss_pred --CCcEEEEECCCcceeeeecc
Q 021036 156 --DGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 156 --d~~v~iwd~~~~~~~~~~~~ 175 (318)
...++|||+++|.....+..
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~~ 300 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFPV 300 (698)
T ss_pred CCCceEEEEEccccchhcceec
Confidence 25799999999988776654
No 305
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.38 E-value=0.00068 Score=54.12 Aligned_cols=210 Identities=14% Similarity=0.111 Sum_probs=116.9
Q ss_pred CCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee---ccccccEEEEEeeeecCCCCCCCcEEEEEeCC
Q 021036 80 SSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF---QAHNSWITSISLAVLSSDSSNPQVLLVTGSSD 156 (318)
Q Consensus 80 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d 156 (318)
.+.+|++||.- .|..|.|=..++.= ...+... +.....=+.++| ++++.+|+.+...
T Consensus 5 ~~~~Gk~lAi~-qd~~iEiRsa~Ddf------------~si~~kcqVpkD~~PQWRkl~W-------SpD~tlLa~a~S~ 64 (282)
T PF15492_consen 5 LSSDGKLLAIL-QDQCIEIRSAKDDF------------SSIIGKCQVPKDPNPQWRKLAW-------SPDCTLLAYAEST 64 (282)
T ss_pred ecCCCcEEEEE-eccEEEEEeccCCc------------hheeEEEecCCCCCchheEEEE-------CCCCcEEEEEcCC
Confidence 34556777765 45666665554321 0111111 122223478999 9999999999999
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC-ceEEEEEeCCCcEEEeeecc-CCCeeeE
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDI-SCNKFDK 234 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~-~~~~~~~ 234 (318)
|+|+++|+.... +..+..... + ...-...|..+.|.....++. ...|++-...|.++-|-+.. ....++.
T Consensus 65 G~i~vfdl~g~~-lf~I~p~~~-~------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e 136 (282)
T PF15492_consen 65 GTIRVFDLMGSE-LFVIPPAMS-F------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQE 136 (282)
T ss_pred CeEEEEecccce-eEEcCcccc-c------CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCccee
Confidence 999999997643 334333211 0 011233566666642111111 33566666788888775433 2233444
Q ss_pred eeeee--c-ccCceeEEEEcCCCCEEEEecC-C----------CcEEEEEecCCceeeeecCCCCCCcc-----------
Q 021036 235 VGSYN--A-HDQVVTGLAWAFDGCCLYSCSQ-D----------NFVRSWIFHGNSLSQVSIPTNTPGLQ----------- 289 (318)
Q Consensus 235 ~~~~~--~-h~~~v~~~~~~~~~~~l~s~~~-d----------~~v~iwd~~~~~~~~~~~~~~~~~~~----------- 289 (318)
.+++. . +...|.++.|+|..++|+.|+. . .-+.-|.+-++...-.........+.
T Consensus 137 ~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 137 NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 44443 2 4678999999999887776652 1 13556665443322111111111110
Q ss_pred cc----ccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 290 SC----TDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 290 ~~----~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.. .........|..|..||||+.||+.|
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih 248 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIH 248 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEE
Confidence 00 00112346899999999999999986
No 306
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.34 E-value=0.00067 Score=54.57 Aligned_cols=203 Identities=13% Similarity=0.105 Sum_probs=107.5
Q ss_pred ceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEE
Q 021036 57 SLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSIS 135 (318)
Q Consensus 57 ~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~ 135 (318)
+..++|+|+. +.++++....+.|...+.+ |+ .++.+.-. .+..-.|+
T Consensus 24 ~SGLTy~pd~-----------------~tLfaV~d~~~~i~els~~-G~--------------vlr~i~l~g~~D~EgI~ 71 (248)
T PF06977_consen 24 LSGLTYNPDT-----------------GTLFAVQDEPGEIYELSLD-GK--------------VLRRIPLDGFGDYEGIT 71 (248)
T ss_dssp EEEEEEETTT-----------------TEEEEEETTTTEEEEEETT-----------------EEEEEE-SS-SSEEEEE
T ss_pred ccccEEcCCC-----------------CeEEEEECCCCEEEEEcCC-CC--------------EEEEEeCCCCCCceeEE
Confidence 3348888876 4688888888888888864 33 34444322 34578899
Q ss_pred eeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc-eeee--ecccccccccceeeeeecccceeEEEEeeccCCCCceEEE
Q 021036 136 LAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE-LQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLA 212 (318)
Q Consensus 136 ~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~ 212 (318)
+ ..++.++++.-.++.+.++++.... .... ...... .....+...+-.++|+ +.++.|+
T Consensus 72 y-------~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l------~~~~~~N~G~EGla~D-----~~~~~L~ 133 (248)
T PF06977_consen 72 Y-------LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISL------GFPNKGNKGFEGLAYD-----PKTNRLF 133 (248)
T ss_dssp E--------STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---------S---SS--EEEEEE-----TTTTEEE
T ss_pred E-------ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEec------ccccCCCcceEEEEEc-----CCCCEEE
Confidence 9 7778777766678999999884321 1111 000000 0012234568899999 7777676
Q ss_pred EEeCCCcEEEeeecc--CCCeeeEeeeee------cccCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 213 VGKGSGSFDLWKCDI--SCNKFDKVGSYN------AHDQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 213 ~~~~dg~i~vw~~~~--~~~~~~~~~~~~------~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
.+-......+|.++. ..... .+.... .....+.+++++|. +++++.......|..+|..+.....+....
T Consensus 134 v~kE~~P~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~ 212 (248)
T PF06977_consen 134 VAKERKPKRLYEVNGFPGGFDL-FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDR 212 (248)
T ss_dssp EEEESSSEEEEEEESTT-SS---EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-ST
T ss_pred EEeCCCChhhEEEccccCccce-eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCC
Confidence 777666777886554 11111 111111 13346789999996 667788888899999996554444444333
Q ss_pred CCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
... .+...-..--+|+|.++|.+.++.
T Consensus 213 g~~------gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 213 GFH------GLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp TGG------G-SS---SEEEEEE-TT--EEEEE
T ss_pred ccc------CcccccCCccEEEECCCCCEEEEc
Confidence 210 111111245799999999876653
No 307
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.31 E-value=0.0001 Score=70.54 Aligned_cols=154 Identities=11% Similarity=0.036 Sum_probs=96.4
Q ss_pred cCCCCCccEEEEecC---C---CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 78 NGSSNWFSILAVGGR---S---GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~---d---g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
+.|-.||.++|+.+. . ..+|||+.+ |. +...-..-.+-=.+++| .|.|++|+
T Consensus 215 ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~--------------L~stSE~v~gLe~~l~W-------rPsG~lIA 272 (928)
T PF04762_consen 215 ISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GE--------------LQSTSEPVDGLEGALSW-------RPSGNLIA 272 (928)
T ss_pred EEECCCCcEEEEEEEEcCCCceeEEEEECCC-ce--------------EEeccccCCCccCCccC-------CCCCCEEE
Confidence 334445599998764 3 468999987 22 22221111222357899 89999999
Q ss_pred EEeC---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC
Q 021036 152 TGSS---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS 228 (318)
Q Consensus 152 s~~~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~ 228 (318)
+... ...|.+|.- +|-....|.... ......|..|.|+ +++..||....|. |.+| ...
T Consensus 273 ~~q~~~~~~~VvFfEr-NGLrhgeF~l~~----------~~~~~~v~~l~Wn-----~ds~iLAv~~~~~-vqLW--t~~ 333 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFER-NGLRHGEFTLRF----------DPEEEKVIELAWN-----SDSEILAVWLEDR-VQLW--TRS 333 (928)
T ss_pred EEEEcCCCcEEEEEec-CCcEeeeEecCC----------CCCCceeeEEEEC-----CCCCEEEEEecCC-ceEE--Eee
Confidence 8875 345666653 343333333221 1123478999999 9999999987555 9999 566
Q ss_pred CCeeeEeeeeecc-cCceeEEEEcCCC-CEEEEecCCCcEEEEEec
Q 021036 229 CNKFDKVGSYNAH-DQVVTGLAWAFDG-CCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 229 ~~~~~~~~~~~~h-~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~ 272 (318)
+..|...+++.-. ...+..+.|+|.. ..|.....+|.+..++..
T Consensus 334 NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 334 NYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred CCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEE
Confidence 7776555555432 2345569999964 456666666777666553
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.29 E-value=0.0004 Score=56.01 Aligned_cols=195 Identities=16% Similarity=0.023 Sum_probs=109.1
Q ss_pred cceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 18 HPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 18 ~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
..+++++.++.+..||..+++.+-........... . ... +..++.+..++.+.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-------~--~~~------------------~~~v~v~~~~~~l~ 89 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-------P--VVD------------------GGRVYVGTSDGSLY 89 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-------E--EEE------------------TTEEEEEETTSEEE
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEeeccccccce-------e--eec------------------ccccccccceeeeE
Confidence 44566679999999999888765554432110000 0 011 25667677888999
Q ss_pred EEEccCCccccccccccCCceeEEee-ecccc---ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGL-FQAHN---SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSA 173 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~---~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 173 (318)
.+|..+|+. +.. ..... ........ ...++.++.+..++.|..+|..+|+.+...
T Consensus 90 ~~d~~tG~~--------------~W~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~ 148 (238)
T PF13360_consen 90 ALDAKTGKV--------------LWSIYLTSSPPAGVRSSSSP-------AVDGDRLYVGTSSGKLVALDPKTGKLLWKY 148 (238)
T ss_dssp EEETTTSCE--------------EEEEEE-SSCTCSTB--SEE-------EEETTEEEEEETCSEEEEEETTTTEEEEEE
T ss_pred ecccCCcce--------------eeeeccccccccccccccCc-------eEecCEEEEEeccCcEEEEecCCCcEEEEe
Confidence 999888763 222 11110 11122222 223667888888999999999999988776
Q ss_pred cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC
Q 021036 174 EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 253 (318)
.....+.... . . ....+..-.+. .++ .++.++.++.+.-+ |..+++ .+.+.. ...+... ....
T Consensus 149 ~~~~~~~~~~--~-~-~~~~~~~~~~~-----~~~-~v~~~~~~g~~~~~--d~~tg~--~~w~~~--~~~~~~~-~~~~ 211 (238)
T PF13360_consen 149 PVGEPRGSSP--I-S-SFSDINGSPVI-----SDG-RVYVSSGDGRVVAV--DLATGE--KLWSKP--ISGIYSL-PSVD 211 (238)
T ss_dssp ESSTT-SS----E-E-EETTEEEEEEC-----CTT-EEEEECCTSSEEEE--ETTTTE--EEEEEC--SS-ECEC-EECC
T ss_pred ecCCCCCCcc--e-e-eecccccceEE-----ECC-EEEEEcCCCeEEEE--ECCCCC--EEEEec--CCCccCC-ceee
Confidence 6533210000 0 0 00011111121 334 66666667753333 666776 222222 2222221 3456
Q ss_pred CCEEEEecCCCcEEEEEecCCcee
Q 021036 254 GCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 254 ~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+..++.++.++.|..||+++++..
T Consensus 212 ~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 212 GGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CTEEEEEETTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCEEEEEECCCCCEE
Confidence 777777779999999999987653
No 309
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.29 E-value=1.5e-06 Score=78.64 Aligned_cols=168 Identities=18% Similarity=0.240 Sum_probs=100.7
Q ss_pred CCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 68 LSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 68 ~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
+..|...-+|++|+.+.+.|+.|+..|.|+++++.+|. ......+|.++|+-+.- +.+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~--------------~e~s~ncH~SavT~veP-------s~dg 1155 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS--------------MEESVNCHQSAVTLVEP-------SVDG 1155 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCcc--------------ccccccccccccccccc-------cCCc
Confidence 44566678899999999999999999999999999864 34566778888877766 6666
Q ss_pred cEEEEEeCCC--cEEEEECCC-cceeeeecccc-------cccccce---------ee------------eeecccceeE
Q 021036 148 VLLVTGSSDG--SVRIWDGYI-QELQKSAEAHC-------VPFSLLK---------EV------------VTVNTVPISV 196 (318)
Q Consensus 148 ~~l~s~~~d~--~v~iwd~~~-~~~~~~~~~~~-------~~~~~~~---------~~------------~~~~~~~v~~ 196 (318)
..+++.+.-. -..+|++.+ +...+++.... ..++.+. .+ .......-++
T Consensus 1156 s~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~ 1235 (1516)
T KOG1832|consen 1156 STQLTSSSSSSPLSALWDASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNL 1235 (1516)
T ss_pred ceeeeeccccCchHHHhccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccc
Confidence 6655554322 355676653 22222222110 0000000 00 0011222355
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
..|+ |+..+++- || .+| |.+..+ .++.|...+..+ .-.|+|.|.-++.-++ |||+++-.+
T Consensus 1236 a~Fs-----P~D~LIln---dG--vLW--DvR~~~--aIh~FD~ft~~~-~G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1236 AHFS-----PCDTLILN---DG--VLW--DVRIPE--AIHRFDQFTDYG-GGGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred cccC-----CCcceEee---Cc--eee--eeccHH--HHhhhhhheecc-cccccCCCceEEeech-----hhhhHHHHH
Confidence 5666 77766653 44 688 444443 566665444332 2359999998777663 899987443
No 310
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.19 E-value=0.00016 Score=62.82 Aligned_cols=135 Identities=13% Similarity=0.004 Sum_probs=83.3
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.++.+|.+..+|.++++. +-.... ....... ..+..++.++.||.+..+|
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~--------------~W~~~~--~~~~~p~---------~~~~~vyv~~~~G~l~~~d 295 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRV--------------LWKRDA--SSYQGPA---------VDDNRLYVTDADGVVVALD 295 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcE--------------EEeecc--CCccCce---------EeCCEEEEECCCCeEEEEE
Confidence 35777788899999999988652 222211 1111111 2345778888999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+++.+........ ........ .+..+++++.+|.++++ +..+++ .+.+++.+..
T Consensus 296 ~~tG~~~W~~~~~~~-------------~~~ssp~i-------~g~~l~~~~~~G~l~~~--d~~tG~--~~~~~~~~~~ 351 (377)
T TIGR03300 296 RRSGSELWKNDELKY-------------RQLTAPAV-------VGGYLVVGDFEGYLHWL--SREDGS--FVARLKTDGS 351 (377)
T ss_pred CCCCcEEEccccccC-------------CccccCEE-------ECCEEEEEeCCCEEEEE--ECCCCC--EEEEEEcCCC
Confidence 999987765421110 01111122 35688889999999998 666666 5556654443
Q ss_pred cee-EEEEcCCCCEEEEecCCCcEEEE
Q 021036 244 VVT-GLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 244 ~v~-~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
.+. ...+. +..|+.++.||.|..|
T Consensus 352 ~~~~sp~~~--~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 352 GIASPPVVV--GDGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCCEEE--CCEEEEEeCCceEEEe
Confidence 322 12222 3458888899998765
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.13 E-value=0.00086 Score=58.28 Aligned_cols=147 Identities=12% Similarity=-0.015 Sum_probs=85.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec---ccc--ccEEEEEeeeecCCCCCCCcEEEEEeCCCcE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ---AHN--SWITSISLAVLSSDSSNPQVLLVTGSSDGSV 159 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v 159 (318)
..++.+..+|.+..+|.++++..- ...+. +.. .....+.-.| .-.+..++.++.+|.+
T Consensus 191 ~~v~~~~~~g~v~ald~~tG~~~W------------~~~~~~~~g~~~~~~~~~~~~~p-----~~~~~~vy~~~~~g~l 253 (377)
T TIGR03300 191 GGVLVGFAGGKLVALDLQTGQPLW------------EQRVALPKGRTELERLVDVDGDP-----VVDGGQVYAVSYQGRV 253 (377)
T ss_pred CEEEEECCCCEEEEEEccCCCEee------------eeccccCCCCCchhhhhccCCcc-----EEECCEEEEEEcCCEE
Confidence 467788889999999998875320 00000 000 0000010000 0124577888889999
Q ss_pred EEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee
Q 021036 160 RIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN 239 (318)
Q Consensus 160 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~ 239 (318)
..+|..+++........ ....... .+..++.++.+|.+..+ |..+++ .+.+..
T Consensus 254 ~a~d~~tG~~~W~~~~~----------------~~~~p~~-------~~~~vyv~~~~G~l~~~--d~~tG~--~~W~~~ 306 (377)
T TIGR03300 254 AALDLRSGRVLWKRDAS----------------SYQGPAV-------DDNRLYVTDADGVVVAL--DRRSGS--ELWKND 306 (377)
T ss_pred EEEECCCCcEEEeeccC----------------CccCceE-------eCCEEEEECCCCeEEEE--ECCCCc--EEEccc
Confidence 99999999876654311 1111122 34567777889999998 555665 333321
Q ss_pred cccC-ceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 240 AHDQ-VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 240 ~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.... ....... .+..+++++.+|.|+++|..+++..
T Consensus 307 ~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred cccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE
Confidence 1111 1111111 3668899999999999999887665
No 312
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=7.8e-05 Score=61.91 Aligned_cols=87 Identities=14% Similarity=0.165 Sum_probs=68.3
Q ss_pred eecccccCCCCcccccccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeee
Q 021036 61 AWSPVLRLSSKKYPVPQNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVL 139 (318)
Q Consensus 61 ~w~p~~~~~~~~~~v~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~ 139 (318)
.+.+..-+.+|...|.++++|+..+ ++..++.+..|+|.|+++.. .+..+..+ ..+++++|
T Consensus 182 ~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--------------~vssy~a~-~~~wSC~w--- 243 (463)
T KOG1645|consen 182 DFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--------------VVSSYIAY-NQIWSCCW--- 243 (463)
T ss_pred CcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce--------------eeeheecc-CCceeeee---
Confidence 3444445667778899999999866 78889999999999999843 44556666 78999999
Q ss_pred cCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 140 SSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 140 ~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
.-.+..+|..|...|.|.+||++..+
T Consensus 244 ---Dlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 244 ---DLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred ---ccCCcceeEEeccCceEEEEEccCCC
Confidence 34445678888899999999999754
No 313
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.03 E-value=0.00052 Score=64.84 Aligned_cols=198 Identities=11% Similarity=0.073 Sum_probs=120.0
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..|.++.+-.+++-++.+...|.|.+-|.++.. ......-...|.+++| +++++.++.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~---------------~eivg~vd~GI~aasw-------S~Dee~l~l 126 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLE---------------LEIVGNVDNGISAASW-------SPDEELLAL 126 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccc---------------eeeeeeccCceEEEee-------cCCCcEEEE
Confidence 456777777777888889999999999887643 2223334678999999 999999999
Q ss_pred EeCCCcEEEEECC----Cccee-------------------eeeccccc---ccccce-----eeeeecccceeEEEEee
Q 021036 153 GSSDGSVRIWDGY----IQELQ-------------------KSAEAHCV---PFSLLK-----EVVTVNTVPISVLSLIL 201 (318)
Q Consensus 153 ~~~d~~v~iwd~~----~~~~~-------------------~~~~~~~~---~~~~~~-----~~~~~~~~~v~~l~~~~ 201 (318)
.+.++++.+.+-. ..+.+ ..+.+... +..... .....+. .-..++|.
T Consensus 127 iT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~-~~~~IsWR- 204 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDD-HKTSISWR- 204 (1265)
T ss_pred EeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhcc-CCceEEEc-
Confidence 9998888876541 11111 01111000 000000 0000111 12357887
Q ss_pred ccCCCCceEEEEE-----eCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe---cCCCcEEEEEecC
Q 021036 202 PVQSPRLMLLAVG-----KGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC---SQDNFVRSWIFHG 273 (318)
Q Consensus 202 ~~~~~~~~~l~~~-----~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~---~~d~~v~iwd~~~ 273 (318)
.||++||+. .....|++|| .. +.......- ..+.=.+++|-|.|..+++- ..|+.|.+|..++
T Consensus 205 ----gDg~~fAVs~~~~~~~~RkirV~d--rE-g~Lns~se~--~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNG 275 (1265)
T KOG1920|consen 205 ----GDGEYFAVSFVESETGTRKIRVYD--RE-GALNSTSEP--VEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNG 275 (1265)
T ss_pred ----cCCcEEEEEEEeccCCceeEEEec--cc-chhhcccCc--ccccccceeecCCCCeEeeeeecCCCCcEEEEecCC
Confidence 899999993 3337899994 33 221111111 11223568999999988875 4566899998765
Q ss_pred Ccee--eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 274 NSLS--QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 274 ~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
-... .+....+. ..|..++|+.++..||+.
T Consensus 276 L~hg~f~l~~p~de-------------~~ve~L~Wns~sdiLAv~ 307 (1265)
T KOG1920|consen 276 LRHGEFVLPFPLDE-------------KEVEELAWNSNSDILAVV 307 (1265)
T ss_pred ccccccccCCcccc-------------cchheeeecCCCCceeee
Confidence 2222 22222221 248999999999998873
No 314
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.03 E-value=6.7e-05 Score=66.64 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=101.0
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.+++++.|+.-|.+.+|+...++. ......+-...+..... +++..+++.|+..|.|.++
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~-------------~~~~~~~~~~~~~~~~v-------s~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEM-------------RKLKNEGATGITCVRSV-------SSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred CCceEEEecccceEEEEecCchhh-------------hcccccCccceEEEEEe-------cchhHhhhhhcCCceEEee
Confidence 358999999999999999987652 12222233444555666 7778888888999999999
Q ss_pred ECCCcceeee-ecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 163 DGYIQELQKS-AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 163 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
-+..+..... +..+. ...|+..|++++|+ +++..+++|...|+|.+-.++.+..-....+.+..-
T Consensus 104 ql~~~~p~~~~~~t~~---------d~~~~~rVTal~Ws-----~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ 169 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPC---------DKSHKCRVTALEWS-----KNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSE 169 (726)
T ss_pred hhhccCCCcceeeccc---------cccCCceEEEEEec-----ccccEEeecCCCceEEEEEechhhhhccccceeecc
Confidence 8776332211 11111 12266789999999 999999999999999988666532111233344445
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeee
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQV 279 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 279 (318)
.+.|-.+++. ..+|+.++.-.. .++++..+...++
T Consensus 170 ds~IVQlD~~--q~~LLVStl~r~-~Lc~tE~eti~QI 204 (726)
T KOG3621|consen 170 DSEIVQLDYL--QSYLLVSTLTRC-ILCQTEAETITQI 204 (726)
T ss_pred CcceEEeecc--cceehHhhhhhh-heeecchhHHHHh
Confidence 5667666543 334444333333 3566655444443
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.02 E-value=0.00011 Score=64.14 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
.....|.+.++ +++.+.|+.|+.||+|.+||...+..... . .....+.++|+
T Consensus 257 pL~s~v~~ca~-------sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-k---------------a~~~P~~iaWH----- 308 (545)
T PF11768_consen 257 PLPSQVICCAR-------SPSEDKLVLGCEDGSIILYDTTRGVTLLA-K---------------AEFIPTLIAWH----- 308 (545)
T ss_pred ecCCcceEEec-------CcccceEEEEecCCeEEEEEcCCCeeeee-e---------------ecccceEEEEc-----
Confidence 45678999999 89999999999999999999887633322 1 11256789999
Q ss_pred CCceEEEEEeCCCcEEEeeecc
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
|+|.++++|+..|.+.+||+-+
T Consensus 309 p~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 309 PDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred CCCcEEEEEcCCceEEEEEeec
Confidence 9999999999999999997543
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.98 E-value=3.4e-06 Score=73.75 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=93.1
Q ss_pred ccEEEEec----CCCcEEEEEccCCccccccccccCCceeEEeeecc-ccccEEEEEeeeecCCCCCCCcEEEEEeCCCc
Q 021036 84 FSILAVGG----RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA-HNSWITSISLAVLSSDSSNPQVLLVTGSSDGS 158 (318)
Q Consensus 84 ~~~l~~g~----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~ 158 (318)
.+.||+|- .|..+.|||+.+.-.. ++.-..+.+ ......+++| ..+.+++.+|...+.
T Consensus 115 tn~LAagldkhrnds~~~Iwdi~s~ltv----------Pke~~~fs~~~l~gqns~cw-------lrd~klvlaGm~sr~ 177 (783)
T KOG1008|consen 115 TNHLAAGLDKHRNDSSLKIWDINSLLTV----------PKESPLFSSSTLDGQNSVCW-------LRDTKLVLAGMTSRS 177 (783)
T ss_pred HHHHHhhhhhhcccCCccceecccccCC----------CccccccccccccCcccccc-------ccCcchhhcccccch
Confidence 46777773 4667999999875221 111111222 3445668999 678888999999999
Q ss_pred EEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCC-CceEEEEEeCCCcEEEeeeccCCCeeeEee
Q 021036 159 VRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP-RLMLLAVGKGSGSFDLWKCDISCNKFDKVG 236 (318)
Q Consensus 159 v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 236 (318)
+.++|++.... ...+ ....+..+.++ | .++++++-. ||.|.+||- .+.-+ .++.
T Consensus 178 ~~ifdlRqs~~~~~sv----------------nTk~vqG~tVd-----p~~~nY~cs~~-dg~iAiwD~-~rnie-npl~ 233 (783)
T KOG1008|consen 178 VHIFDLRQSLDSVSSV----------------NTKYVQGITVD-----PFSPNYFCSNS-DGDIAIWDT-YRNIE-NPLQ 233 (783)
T ss_pred hhhhhhhhhhhhhhhh----------------hhhhcccceec-----CCCCCceeccc-cCceeeccc-hhhhc-cHHH
Confidence 99999984321 1111 11245667777 5 778887766 999999952 22211 1333
Q ss_pred eeeccc----CceeEEEEcCCCC-EEEEecCC-CcEEEEEecC
Q 021036 237 SYNAHD----QVVTGLAWAFDGC-CLYSCSQD-NFVRSWIFHG 273 (318)
Q Consensus 237 ~~~~h~----~~v~~~~~~~~~~-~l~s~~~d-~~v~iwd~~~ 273 (318)
.....+ ..+..++|.|... .+++...| ++|+++|+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 332222 2488999999633 45555544 7899999863
No 317
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.96 E-value=0.0064 Score=49.38 Aligned_cols=144 Identities=15% Similarity=0.075 Sum_probs=87.7
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-CCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS-NPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~-~~~~~l~s~~~d~~v~iw 162 (318)
+.++++--..+.|..|+..+++. ..+... . ...+.+ . +++.+ +.+..+ .+.++
T Consensus 12 g~l~~~D~~~~~i~~~~~~~~~~---------------~~~~~~-~-~~G~~~-------~~~~g~l-~v~~~~-~~~~~ 65 (246)
T PF08450_consen 12 GRLYWVDIPGGRIYRVDPDTGEV---------------EVIDLP-G-PNGMAF-------DRPDGRL-YVADSG-GIAVV 65 (246)
T ss_dssp TEEEEEETTTTEEEEEETTTTEE---------------EEEESS-S-EEEEEE-------ECTTSEE-EEEETT-CEEEE
T ss_pred CEEEEEEcCCCEEEEEECCCCeE---------------EEEecC-C-CceEEE-------EccCCEE-EEEEcC-ceEEE
Confidence 47888888899999999987541 112221 2 566777 4 55544 445444 44555
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC--------CcEEEeeeccCCCeeeE
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS--------GSFDLWKCDISCNKFDK 234 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d--------g~i~vw~~~~~~~~~~~ 234 (318)
|..+++.......... .......+.+++. ++|++.++.... |.|..+ +.. ++...
T Consensus 66 d~~~g~~~~~~~~~~~---------~~~~~~~ND~~vd-----~~G~ly~t~~~~~~~~~~~~g~v~~~--~~~-~~~~~ 128 (246)
T PF08450_consen 66 DPDTGKVTVLADLPDG---------GVPFNRPNDVAVD-----PDGNLYVTDSGGGGASGIDPGSVYRI--DPD-GKVTV 128 (246)
T ss_dssp ETTTTEEEEEEEEETT---------CSCTEEEEEEEE------TTS-EEEEEECCBCTTCGGSEEEEEE--ETT-SEEEE
T ss_pred ecCCCcEEEEeeccCC---------CcccCCCceEEEc-----CCCCEEEEecCCCccccccccceEEE--CCC-CeEEE
Confidence 9888754433332100 0023367899999 999977776643 335554 555 44222
Q ss_pred eeeeecccCceeEEEEcCCCCEEE-EecCCCcEEEEEecC
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLY-SCSQDNFVRSWIFHG 273 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~-s~~~d~~v~iwd~~~ 273 (318)
+...-.....++|+|+++.|+ +-+..+.|..+++..
T Consensus 129 ---~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~ 165 (246)
T PF08450_consen 129 ---VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDA 165 (246)
T ss_dssp ---EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEET
T ss_pred ---EecCcccccceEECCcchheeecccccceeEEEeccc
Confidence 222344568999999998664 667788899999864
No 318
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=0.0001 Score=61.18 Aligned_cols=80 Identities=18% Similarity=0.112 Sum_probs=64.3
Q ss_pred EeeeccccccEEEEEeeeecCCCCCCCc-EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEE
Q 021036 121 IGLFQAHNSWITSISLAVLSSDSSNPQV-LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 121 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
...+.+|...|.+++| ++..+ ++..++.+..|+|.|+++...+..+..+. .+.+++|
T Consensus 186 sq~lp~~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~---------------~~wSC~w 243 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN---------------QIWSCCW 243 (463)
T ss_pred hhcccccchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC---------------Cceeeee
Confidence 3456678889999999 55554 78899999999999999988777766553 7889999
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeec
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+. .+..+++.|..+|.|.+||+.
T Consensus 244 Dl----de~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 244 DL----DERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cc----CCcceeEEeccCceEEEEEcc
Confidence 84 456789999999999999543
No 319
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.91 E-value=4.8e-06 Score=72.90 Aligned_cols=147 Identities=21% Similarity=0.212 Sum_probs=97.3
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe----CCCcEE
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS----SDGSVR 160 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~----~d~~v~ 160 (318)
.+++.|..+|.|-+-.+....- .......+|..+.++++| ++.+.+.|+.|- .|..+.
T Consensus 71 cIlavG~atG~I~l~s~r~~hd------------Ss~E~tp~~ar~Ct~lAw------neLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHD------------SSAEVTPGYARPCTSLAW------NELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred hhhhhccccCceEEeecCCccc------------ccceeccccccccccccc------ccccHHHHHhhhhhhcccCCcc
Confidence 5889999999999998876431 122345678889999999 334455677663 467899
Q ss_pred EEECCCcce--eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 161 IWDGYIQEL--QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 161 iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
|||+.++-. ....... ........+++|. .+.+++++|.....+.++| .+.... ....
T Consensus 133 Iwdi~s~ltvPke~~~fs-----------~~~l~gqns~cwl-----rd~klvlaGm~sr~~~ifd--lRqs~~-~~~s- 192 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFS-----------SSTLDGQNSVCWL-----RDTKLVLAGMTSRSVHIFD--LRQSLD-SVSS- 192 (783)
T ss_pred ceecccccCCCccccccc-----------cccccCccccccc-----cCcchhhcccccchhhhhh--hhhhhh-hhhh-
Confidence 999987621 1110000 0112244578887 7889999999999999994 443210 1111
Q ss_pred ecccCceeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 021036 239 NAHDQVVTGLAWAF-DGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 239 ~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~ 271 (318)
-.+..+..+..+| .+.++++-. ||.|-+||.
T Consensus 193 -vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 193 -VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred -hhhhhcccceecCCCCCceeccc-cCceeeccc
Confidence 1334566788888 667777665 999999993
No 320
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.5e-05 Score=65.90 Aligned_cols=74 Identities=20% Similarity=0.304 Sum_probs=64.2
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEE-EEEee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWIT-SISLA 137 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~ 137 (318)
-+.|+|.- .++|.+..+|.|.+..++- +.+.++.-+...++ +++|
T Consensus 25 ~~ewnP~~------------------dLiA~~t~~gelli~R~n~---------------qRlwtip~p~~~v~~sL~W- 70 (665)
T KOG4640|consen 25 RIEWNPKM------------------DLIATRTEKGELLIHRLNW---------------QRLWTIPIPGENVTASLCW- 70 (665)
T ss_pred EEEEcCcc------------------chhheeccCCcEEEEEecc---------------ceeEeccCCCCccceeeee-
Confidence 47888888 9999999999999999883 45566776777777 9999
Q ss_pred eecCCCCCCCcEEEEEeCCCcEEEEECCCcceeee
Q 021036 138 VLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 138 p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
.++|++|+.|-.||+|++.|+.++..+..
T Consensus 71 ------~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 71 ------RPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred ------cCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 99999999999999999999999887766
No 321
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.85 E-value=5.7e-05 Score=40.92 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=33.0
Q ss_pred EeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 234 KVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 234 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
++..+..|...|.++.|++.+.++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4556678889999999999999999999999999996
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.82 E-value=0.0019 Score=61.22 Aligned_cols=115 Identities=18% Similarity=0.219 Sum_probs=72.8
Q ss_pred EEEEeeeecCCCCCCCcEEEEEe----CC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 132 TSISLAVLSSDSSNPQVLLVTGS----SD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 132 ~~~~~~p~~~~~~~~~~~l~s~~----~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
.+|+| ..+|+++++.. .+ +.+++||-+ |.....-... .+.=.+++|- |
T Consensus 199 ~~IsW-------RgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~--------------~~l~~~LsWk-----P 251 (1265)
T KOG1920|consen 199 TSISW-------RGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV--------------EGLQHSLSWK-----P 251 (1265)
T ss_pred ceEEE-------ccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc--------------cccccceeec-----C
Confidence 45899 89999999843 23 799999977 4332221111 1122467787 8
Q ss_pred CceEEEEEe---CCCcEEEeeeccCCCee-eEeeeeecccCceeEEEEcCCCCEEEE---ecCCCcEEEEEecCCc
Q 021036 207 RLMLLAVGK---GSGSFDLWKCDISCNKF-DKVGSYNAHDQVVTGLAWAFDGCCLYS---CSQDNFVRSWIFHGNS 275 (318)
Q Consensus 207 ~~~~l~~~~---~dg~i~vw~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s---~~~d~~v~iwd~~~~~ 275 (318)
.|.++++-- .|+.|.+|. ...-+. +....+......|..++|+.++..|+. ......|++|-+.+..
T Consensus 252 sgs~iA~iq~~~sd~~IvffE--rNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 252 SGSLIAAIQCKTSDSDIVFFE--RNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred CCCeEeeeeecCCCCcEEEEe--cCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 888888753 466788983 222111 011122223344899999999998887 5555569999887643
No 323
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.81 E-value=0.0043 Score=42.64 Aligned_cols=104 Identities=20% Similarity=0.272 Sum_probs=66.2
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
|++|+++.+.. ...+.|++|+.|..|++|+-. +.+..+.... .|..|+-. . +..
T Consensus 2 V~al~~~d~d~---dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~---------------~v~~L~~~-----~-~~~ 55 (111)
T PF14783_consen 2 VTALCLFDFDG---DGENELLVGSDDFEIRVFKGD--EIVAEITETD---------------KVTSLCSL-----G-GGR 55 (111)
T ss_pred eeEEEEEecCC---CCcceEEEecCCcEEEEEeCC--cEEEEEeccc---------------ceEEEEEc-----C-CCE
Confidence 66777754432 223679999999999999854 4444443322 67777765 3 467
Q ss_pred EEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEE-cCC--CC-EEEEecCCCcEE
Q 021036 211 LAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAW-AFD--GC-CLYSCSQDNFVR 267 (318)
Q Consensus 211 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~--~~-~l~s~~~d~~v~ 267 (318)
|+.+..+|+|-+| +.... +...+.... +.++.+ +.+ |. -|++|-.+|.|-
T Consensus 56 F~Y~l~NGTVGvY--~~~~R----lWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 56 FAYALANGTVGVY--DRSQR----LWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEecCCEEEEE--eCcce----eeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999999999999 43333 333443333 555544 333 32 688888888764
No 324
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.80 E-value=0.0056 Score=51.93 Aligned_cols=149 Identities=20% Similarity=0.183 Sum_probs=91.5
Q ss_pred cEEEEecC----------CCcEEEEEccCC-ccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 85 SILAVGGR----------SGKVSLWRICVP-KCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 85 ~~l~~g~~----------dg~i~iw~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.+|++|+. .|.|.++++... ... ...+.+.. ....++|++++- - ++. |+.+
T Consensus 43 ~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~--------~~l~~i~~-~~~~g~V~ai~~-------~-~~~-lv~~ 104 (321)
T PF03178_consen 43 EYIVVGTAFNYGEDPEPSSGRILVFEISESPENN--------FKLKLIHS-TEVKGPVTAICS-------F-NGR-LVVA 104 (321)
T ss_dssp EEEEEEEEE--TTSSS-S-EEEEEEEECSS-------------EEEEEEE-EEESS-EEEEEE-------E-TTE-EEEE
T ss_pred CEEEEEecccccccccccCcEEEEEEEEcccccc--------eEEEEEEE-EeecCcceEhhh-------h-CCE-EEEe
Confidence 67777643 288999999873 100 00122222 234788999987 3 444 4444
Q ss_pred eCCCcEEEEECCCcc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 154 SSDGSVRIWDGYIQE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
. .+.|.+|++...+ ....-..+ ....+.++... ++++++|+....+.++.++....+.
T Consensus 105 ~-g~~l~v~~l~~~~~l~~~~~~~-------------~~~~i~sl~~~-------~~~I~vgD~~~sv~~~~~~~~~~~l 163 (321)
T PF03178_consen 105 V-GNKLYVYDLDNSKTLLKKAFYD-------------SPFYITSLSVF-------KNYILVGDAMKSVSLLRYDEENNKL 163 (321)
T ss_dssp E-TTEEEEEEEETTSSEEEEEEE--------------BSSSEEEEEEE-------TTEEEEEESSSSEEEEEEETTTE-E
T ss_pred e-cCEEEEEEccCcccchhhheec-------------ceEEEEEEecc-------ccEEEEEEcccCEEEEEEEccCCEE
Confidence 3 4899999998777 33221111 11245555554 5699999999999998777655444
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+.. ......++++.|-+++..++.+..+|.+.++....
T Consensus 164 ~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 164 ILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 44433 22345688888886667899999999999998863
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.77 E-value=0.0064 Score=48.97 Aligned_cols=149 Identities=20% Similarity=0.113 Sum_probs=84.2
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
+.+++++.++.|..||..+|+ .+..+.. ...+..... ..+..++.++.++.+..+|.
T Consensus 37 ~~v~~~~~~~~l~~~d~~tG~--------------~~W~~~~-~~~~~~~~~--------~~~~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 37 GRVYVASGDGNLYALDAKTGK--------------VLWRFDL-PGPISGAPV--------VDGGRVYVGTSDGSLYALDA 93 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSE--------------EEEEEEC-SSCGGSGEE--------EETTEEEEEETTSEEEEEET
T ss_pred CEEEEEcCCCEEEEEECCCCC--------------EEEEeec-cccccceee--------ecccccccccceeeeEeccc
Confidence 677777899999999998865 3333322 111111001 12345666778889999999
Q ss_pred CCcceeeee-cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 165 YIQELQKSA-EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 165 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
.+|+..... ....... . ........ ..++.++.+..++.|..+ |.++++ .+........
T Consensus 94 ~tG~~~W~~~~~~~~~~----------~-~~~~~~~~-----~~~~~~~~~~~~g~l~~~--d~~tG~--~~w~~~~~~~ 153 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPA----------G-VRSSSSPA-----VDGDRLYVGTSSGKLVAL--DPKTGK--LLWKYPVGEP 153 (238)
T ss_dssp TTSCEEEEEEE-SSCTC----------S-TB--SEEE-----EETTEEEEEETCSEEEEE--ETTTTE--EEEEEESSTT
T ss_pred CCcceeeeecccccccc----------c-cccccCce-----EecCEEEEEeccCcEEEE--ecCCCc--EEEEeecCCC
Confidence 999988774 3221100 0 11112222 236777888888999888 777777 4444433221
Q ss_pred c----------eeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 244 V----------VTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 244 ~----------v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
. +..-....++ .++.++.++.+.-+|+.+++..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~ 196 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKL 196 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEE
Confidence 1 1121222244 6666777775333498887743
No 326
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.77 E-value=0.0098 Score=51.59 Aligned_cols=231 Identities=15% Similarity=0.172 Sum_probs=110.0
Q ss_pred CccceEEeeCCCceeEeecCCCCCCC------ceec--chhcccc---cccc-------ceeeeecccccCCCCcccccc
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLP------LITA--DQYASRS---AMLH-------SLAVAWSPVLRLSSKKYPVPQ 77 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~------~~~~--~~~~~~~---~~~~-------~~~~~w~p~~~~~~~~~~v~~ 77 (318)
.+..++.|-.+|.|.+|....++.-. .... ..+.+.+ ...+ .+.--+.|...+....++|++
T Consensus 12 ~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~~~~g~vta 91 (395)
T PF08596_consen 12 ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLDAKQGPVTA 91 (395)
T ss_dssp TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE---S-SEEE
T ss_pred CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhheeccCCcEeE
Confidence 34568889999999999765543221 1100 0010110 0000 001234454445556788999
Q ss_pred cCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecc------ccccEEEEEeeeecCCCC-CCCcEE
Q 021036 78 NGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQA------HNSWITSISLAVLSSDSS-NPQVLL 150 (318)
Q Consensus 78 ~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~~~-~~~~~l 150 (318)
++.|. =.++|.|..+|.+.|.|++.+..+- ...+.. ....|+++.|..+..... ...-.|
T Consensus 92 l~~S~-iGFvaigy~~G~l~viD~RGPavI~------------~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 92 LKNSD-IGFVAIGYESGSLVVIDLRGPAVIY------------NENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp EEE-B-TSEEEEEETTSEEEEEETTTTEEEE------------EEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred EecCC-CcEEEEEecCCcEEEEECCCCeEEe------------eccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 98874 4599999999999999998765431 112222 345788999977654321 123578
Q ss_pred EEEeCCCcEEEEECC--Ccceee-eecccccccccceeeeeecccceeEEE-Eeec---------------cCCCCceEE
Q 021036 151 VTGSSDGSVRIWDGY--IQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLS-LILP---------------VQSPRLMLL 211 (318)
Q Consensus 151 ~s~~~d~~v~iwd~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~-~~~~---------------~~~~~~~~l 211 (318)
++|...|.+.+|.+. .+.... .+... ...+..++..+. ++-+ .....-.-+
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~----------~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGA----------TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEE----------E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeec----------cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 888999999999875 111111 11100 011223333333 2100 000011123
Q ss_pred EEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc-----CCCCEEEEecCCCcEEEEEecC
Q 021036 212 AVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA-----FDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 212 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~-----~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
++...+..++++ ...+.+ ..++..........+.+- ..+..|++-..+|.|++|.+..
T Consensus 229 vVvvSe~~irv~--~~~~~k--~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~ 291 (395)
T PF08596_consen 229 VVVVSESDIRVF--KPPKSK--GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS 291 (395)
T ss_dssp EEEE-SSEEEEE---TT-----EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT
T ss_pred EEEEcccceEEE--eCCCCc--ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC
Confidence 334447889998 444443 222222221222334442 2456788888999999999876
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=0.0019 Score=54.81 Aligned_cols=208 Identities=13% Similarity=0.066 Sum_probs=127.6
Q ss_pred eEEeeC-CCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE-ecCCCcEE
Q 021036 20 TVAASK-SKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV-GGRSGKVS 97 (318)
Q Consensus 20 ~~t~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~-g~~dg~i~ 97 (318)
..|.+. |+.++++|+++-.....+..... ... ..|.-..+. + -..|++ .-.+|.+.
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~DminmiKL~~l--Pg~------a~wv~skGd-----~---------~s~IAVs~~~sg~i~ 125 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMIKLVDL--PGF------AEWVTSKGD-----K---------ISLIAVSLFKSGKIF 125 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhcccccC--CCc------eEEecCCCC-----e---------eeeEEeecccCCCcE
Confidence 456566 89999999887655433332111 111 344333200 0 024444 45688899
Q ss_pred EEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC------cceee
Q 021036 98 LWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI------QELQK 171 (318)
Q Consensus 98 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~------~~~~~ 171 (318)
++|-..+.| +....-.-|..+|.++.+ .+.++.+++....|.|.-|.... .....
T Consensus 126 VvD~~~d~~------------q~~~fkklH~sPV~~i~y-------~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~ 186 (558)
T KOG0882|consen 126 VVDGFGDFC------------QDGYFKKLHFSPVKKIRY-------NQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNF 186 (558)
T ss_pred EECCcCCcC------------ccceecccccCceEEEEe-------eccccceeeccccceeEeecCCCcccCccccccc
Confidence 999875442 222333568999999999 88888999999999999998873 11111
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeee--------------
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGS-------------- 237 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-------------- 237 (318)
.++.... +.. ....+....++.|+ |++..+.+-+.|..|+++. .++++. ++.
T Consensus 187 ~~K~eTd----Ly~-f~K~Kt~pts~Efs-----p~g~qistl~~DrkVR~F~--~KtGkl--vqeiDE~~t~~~~q~ks 252 (558)
T KOG0882|consen 187 ELKHETD----LYG-FPKAKTEPTSFEFS-----PDGAQISTLNPDRKVRGFV--FKTGKL--VQEIDEVLTDAQYQPKS 252 (558)
T ss_pred cccccch----hhc-ccccccCccceEEc-----cccCcccccCcccEEEEEE--eccchh--hhhhhccchhhhhcccc
Confidence 1111110 001 11233456789999 9999999999999999994 444331 111
Q ss_pred ------------------eecccC-ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 238 ------------------YNAHDQ-VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 238 ------------------~~~h~~-~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
+..|.. .-+.+.|+..|++|+.++-=| |++.++.++.+.++....
T Consensus 253 ~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 253 PYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred ccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 112222 234677888899999887654 788888887776555443
No 328
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=0.013 Score=46.57 Aligned_cols=141 Identities=15% Similarity=0.010 Sum_probs=86.4
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
..+++.|+..+.+.--|..+|+.. -+.+ -..+|.+-+. --|++++.|+..|.+.+.+
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-------------We~i--lg~RiE~sa~--------vvgdfVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-------------WEAI--LGVRIECSAI--------VVGDFVVLGCYSGGLYFLC 79 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-------------eehh--hCceeeeeeE--------EECCEEEEEEccCcEEEEE
Confidence 378999999999999999887532 0111 1233433332 1356799999999999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+|+..+.+...+. -.+ ..... +++.++..|+.|+..+.- |.++.. .+.+.+-..+
T Consensus 80 ~~tGs~~w~f~~~~~-------------vk~-~a~~d-----~~~glIycgshd~~~yal--D~~~~~--cVykskcgG~ 136 (354)
T KOG4649|consen 80 VKTGSQIWNFVILET-------------VKV-RAQCD-----FDGGLIYCGSHDGNFYAL--DPKTYG--CVYKSKCGGG 136 (354)
T ss_pred ecchhheeeeeehhh-------------hcc-ceEEc-----CCCceEEEecCCCcEEEe--cccccc--eEEecccCCc
Confidence 999977766543331 011 22344 789999999999999887 666654 5555443333
Q ss_pred ceeEEEEcC-CCCEEEEecCCCcEEEEEe
Q 021036 244 VVTGLAWAF-DGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 244 ~v~~~~~~~-~~~~l~s~~~d~~v~iwd~ 271 (318)
...+-+..| ++. |..+...|.|.--..
T Consensus 137 ~f~sP~i~~g~~s-ly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 137 TFVSPVIAPGDGS-LYAAITAGAVLAVTK 164 (354)
T ss_pred eeccceecCCCce-EEEEeccceEEEEcc
Confidence 223334455 343 333333444433333
No 329
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.0028 Score=57.60 Aligned_cols=147 Identities=17% Similarity=0.152 Sum_probs=91.7
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
+|.++++|+.||+|.|-.+-+++ ....+ ....++.+++++|... -...+.+++|+.-| +.++
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~--------------~~~~~-df~rpiksial~Pd~~--~~~sk~fv~GG~ag-lvL~ 143 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDD--------------EITQY-DFKRPIKSIALHPDFS--RQQSKQFVSGGMAG-LVLS 143 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCc--------------cceeE-ecCCcceeEEeccchh--hhhhhheeecCcce-EEEe
Confidence 58999999999999999988754 22222 2356899999955422 12346899999888 7776
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeeccc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHD 242 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~ 242 (318)
.-+=....... +.....++|.++.|. |+++|-++.+| |++||. ..++ .+..+....
T Consensus 144 er~wlgnk~~v------------~l~~~eG~I~~i~W~-------g~lIAWand~G-v~vyd~--~~~~--~l~~i~~p~ 199 (846)
T KOG2066|consen 144 ERNWLGNKDSV------------VLSEGEGPIHSIKWR-------GNLIAWANDDG-VKVYDT--PTRQ--RLTNIPPPS 199 (846)
T ss_pred hhhhhcCccce------------eeecCccceEEEEec-------CcEEEEecCCC-cEEEec--cccc--eeeccCCCC
Confidence 43211111111 112345689999996 88999998777 799954 3333 222222111
Q ss_pred C------ceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 Q------VVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~------~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
. -...+.|.++.+ |+.| ...+|+|..++.
T Consensus 200 ~~~R~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 200 QSVRPELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred CCCCcccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 1 224577877654 4444 445788888873
No 330
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.72 E-value=0.0011 Score=61.56 Aligned_cols=140 Identities=15% Similarity=0.076 Sum_probs=85.3
Q ss_pred CCcEEEEE-eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 146 PQVLLVTG-SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 146 ~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
+...|+.. .....|+-.|+..|+.+.....+... +|..++-.-....-+...-+.|-.+..+..||
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~-------------~v~~~~p~~K~aqlt~e~tflGls~n~lfriD 558 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI-------------PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRID 558 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc-------------ceeEecccccccccCCCceEEEECCCceEEec
Confidence 33444443 34578999999999998887766531 23333221000011234556677788888885
Q ss_pred eccCCCeeeEeee-ee--cccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceee
Q 021036 225 CDISCNKFDKVGS-YN--AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSC 301 (318)
Q Consensus 225 ~~~~~~~~~~~~~-~~--~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 301 (318)
.++...+ .+.. .+ ......+|++-+.+| +||.|+.+|.||+||--+.. .. ..+++-..+|
T Consensus 559 pR~~~~k--~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AK-------------T~lp~lG~pI 621 (794)
T PF08553_consen 559 PRLSGNK--LVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AK-------------TALPGLGDPI 621 (794)
T ss_pred cCCCCCc--eeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh-hh-------------hcCCCCCCCe
Confidence 5544322 2211 11 133456788777777 69999999999999943311 11 1233344699
Q ss_pred eEEEEcCCCcEEEE
Q 021036 302 LGMAVSPGNLVVAM 315 (318)
Q Consensus 302 ~~v~~sp~~~~l~~ 315 (318)
.+|..+.||+||+.
T Consensus 622 ~~iDvt~DGkwila 635 (794)
T PF08553_consen 622 IGIDVTADGKWILA 635 (794)
T ss_pred eEEEecCCCcEEEE
Confidence 99999999998654
No 331
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.021 Score=52.66 Aligned_cols=153 Identities=13% Similarity=0.150 Sum_probs=92.5
Q ss_pred cEEEEecCCC-----cEEEEEccCCccccccccccCCceeEE---eeec----cccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 85 SILAVGGRSG-----KVSLWRICVPKCYSVEDCKVPTTAVLI---GLFQ----AHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 85 ~~l~~g~~dg-----~i~iw~~~~~~~~~~~~~~~~~~~~~~---~~~~----~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
++|++-+.|+ .++||+++.-+.. .+ +..+ +.+. ....++.+++. +.+-+.++.
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n-----~s---P~c~~~~ri~~~~np~~~~p~s~l~V-------s~~l~~Iv~ 142 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKN-----NS---PQCLYEHRIFTIKNPTNPSPASSLAV-------SEDLKTIVC 142 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCC-----CC---cceeeeeeeeccCCCCCCCcceEEEE-------EccccEEEE
Confidence 5777766555 4899999753210 00 1122 1111 13567888888 777888999
Q ss_pred EeCCCcEEEEECCC--cceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 153 GSSDGSVRIWDGYI--QELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 153 ~~~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
|-.+|.|.++.-+- .+-.+.. .......+|+.+.+. .++..++-...-..|.+|.+. ..
T Consensus 143 Gf~nG~V~~~~GDi~RDrgsr~~------------~~~~~~~pITgL~~~-----~d~~s~lFv~Tt~~V~~y~l~--gr 203 (933)
T KOG2114|consen 143 GFTNGLVICYKGDILRDRGSRQD------------YSHRGKEPITGLALR-----SDGKSVLFVATTEQVMLYSLS--GR 203 (933)
T ss_pred EecCcEEEEEcCcchhcccccee------------eeccCCCCceeeEEe-----cCCceeEEEEecceeEEEEec--CC
Confidence 99999999985331 1111110 111234589999998 666653333335678999554 32
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
. .....+..|+..+.|..+++....+++++ +..+.+|+...
T Consensus 204 ~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~ 244 (933)
T KOG2114|consen 204 T-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDG 244 (933)
T ss_pred C-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCC
Confidence 2 13444667888899999988655344443 34688898765
No 332
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=3.7e-05 Score=70.06 Aligned_cols=128 Identities=14% Similarity=0.102 Sum_probs=90.8
Q ss_pred eeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEE
Q 021036 118 AVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVL 197 (318)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 197 (318)
.+..+.+..|....+|++| +.+.++|+.|+..|.|+++++.+|........|. .+|+.+
T Consensus 1091 Fr~w~~frd~~~~fTc~af-------s~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~--------------SavT~v 1149 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAF-------SGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQ--------------SAVTLV 1149 (1516)
T ss_pred cccchhhhccccceeeEEe-------ecCCceEEeeeccceEEEEEccCccccccccccc--------------cccccc
Confidence 4556677888999999999 8899999999999999999999998776665554 477777
Q ss_pred EEeeccCCCCceEEEEEeCCC--cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 198 SLILPVQSPRLMLLAVGKGSG--SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 198 ~~~~~~~~~~~~~l~~~~~dg--~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
.-+ .+|..+++.+.-. -..+|+. .. ...+.+++.+ -.++.|+.....-+.|.......+||+.++.
T Consensus 1150 ePs-----~dgs~~Ltsss~S~PlsaLW~~--~s-~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1150 EPS-----VDGSTQLTSSSSSSPLSALWDA--SS-TGGPRHSFDE----DKAVKFSNSLQFRALGTEADDALLYDVQTCS 1217 (1516)
T ss_pred ccc-----CCcceeeeeccccCchHHHhcc--cc-ccCccccccc----cceeehhhhHHHHHhcccccceEEEecccCc
Confidence 766 6777766665333 4679953 32 2224444432 3568888764444445555678899999876
Q ss_pred eee
Q 021036 276 LSQ 278 (318)
Q Consensus 276 ~~~ 278 (318)
...
T Consensus 1218 ~l~ 1220 (1516)
T KOG1832|consen 1218 PLQ 1220 (1516)
T ss_pred HHH
Confidence 543
No 333
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.72 E-value=0.00013 Score=39.44 Aligned_cols=38 Identities=29% Similarity=0.609 Sum_probs=32.8
Q ss_pred eEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 119 VLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 119 ~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+....+..|...|.++.| .+.+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAF-------SPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEE-------CCCCCEEEEecCCCeEEEcC
Confidence 345667788999999999 77778999999999999996
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.71 E-value=0.021 Score=49.56 Aligned_cols=193 Identities=18% Similarity=0.155 Sum_probs=98.5
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCcccc-c------c-------------------cc-cc--CCceeEEeeec
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYS-V------E-------------------DC-KV--PTTAVLIGLFQ 125 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~------~-------------------~~-~~--~~~~~~~~~~~ 125 (318)
|+.+.++.+..-|++|...|.|.||.....+... . + +. .+ .....+...+.
T Consensus 4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~ 83 (395)
T PF08596_consen 4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD 83 (395)
T ss_dssp EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence 4444455555889999999999999886543321 0 0 00 00 12344555566
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
...++|++++. +.-| +++.|..+|.+.|.|+|....+......+. .........++++.|....-.
T Consensus 84 ~~~g~vtal~~-------S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~------~~~~~~~~~vt~ieF~vm~~~ 149 (395)
T PF08596_consen 84 AKQGPVTALKN-------SDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRES------FLSKSSSSYVTSIEFSVMTLG 149 (395)
T ss_dssp --S-SEEEEEE--------BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--------T-SS----EEEEEEEEEE-T
T ss_pred ccCCcEeEEec-------CCCc-EEEEEecCCcEEEEECCCCeEEeecccccc------ccccccccCeeEEEEEEEecC
Confidence 66899999998 6555 889999999999999988776655332220 001122335666776632221
Q ss_pred CC---ceEEEEEeCCCcEEEeeecc-CCCeee--EeeeeecccCceeEEE-EcCC-C-------------------CEEE
Q 021036 206 PR---LMLLAVGKGSGSFDLWKCDI-SCNKFD--KVGSYNAHDQVVTGLA-WAFD-G-------------------CCLY 258 (318)
Q Consensus 206 ~~---~~~l~~~~~dg~i~vw~~~~-~~~~~~--~~~~~~~h~~~v~~~~-~~~~-~-------------------~~l~ 258 (318)
.| .-++++|...|.+.+|.+.. ..+.+. .......+.++|..+. ++.+ | +-++
T Consensus 150 ~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 150 GDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp TSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred CCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 23 36899999999999998754 333332 2222223556665554 3221 1 1233
Q ss_pred EecCCCcEEEEEecCCceeeeec
Q 021036 259 SCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 259 s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
....+..++++...+.+.....+
T Consensus 230 VvvSe~~irv~~~~~~k~~~K~~ 252 (395)
T PF08596_consen 230 VVVSESDIRVFKPPKSKGAHKSF 252 (395)
T ss_dssp EEE-SSEEEEE-TT---EEEEE-
T ss_pred EEEcccceEEEeCCCCcccceee
Confidence 33446789999887655544333
No 335
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.70 E-value=0.0024 Score=55.83 Aligned_cols=156 Identities=15% Similarity=0.044 Sum_probs=85.6
Q ss_pred ccccCCCCCccEEEEe---cCC-CcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEE
Q 021036 75 VPQNGSSNWFSILAVG---GRS-GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLL 150 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g---~~d-g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l 150 (318)
+..-.++++++.++.- ... ..+.++++++++. ..+..+.++. ...+| +|+|+.|
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~------------~~i~~~~g~~---~~P~f-------spDG~~l 252 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR------------PVILNFNGNN---GAPAF-------SPDGSKL 252 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCcc------------ceeeccCCcc---CCccC-------CCCCCEE
Confidence 3444555555554443 222 3588889988762 3333444443 34677 8888776
Q ss_pred EEE-eCCCc--EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeec
Q 021036 151 VTG-SSDGS--VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCD 226 (318)
Q Consensus 151 ~s~-~~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~ 226 (318)
+-+ ..||. |.+.|+.++.... +.... +.-..=.|+ |+|+.++- .+..|.-.||-.+
T Consensus 253 ~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~--------------gi~~~Ps~s-----pdG~~ivf~Sdr~G~p~I~~~~ 312 (425)
T COG0823 253 AFSSSRDGSPDIYLMDLDGKNLPR-LTNGF--------------GINTSPSWS-----PDGSKIVFTSDRGGRPQIYLYD 312 (425)
T ss_pred EEEECCCCCccEEEEcCCCCccee-cccCC--------------ccccCccCC-----CCCCEEEEEeCCCCCcceEEEC
Confidence 655 45665 5555776655322 21111 011122455 88876655 4566776777656
Q ss_pred cCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC-CCc--EEEEEecCCc
Q 021036 227 ISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ-DNF--VRSWIFHGNS 275 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-d~~--v~iwd~~~~~ 275 (318)
...... ..+......-..-.|+|+|++|+..+. +|. |.+.|+.++.
T Consensus 313 ~~g~~~---~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 313 LEGSQV---TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCCce---eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC
Confidence 666543 222222222236789999998877664 344 6666665544
No 336
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.0013 Score=57.54 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=87.2
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEe---CC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGS---SD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~---~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 203 (318)
...+..-+| ++++..++-.+ .. ..+.++|+.+++......... .-..-+|+
T Consensus 192 ~~~~~~p~w-------s~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---------------~~~~P~fs--- 246 (425)
T COG0823 192 GSLILTPAW-------SPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---------------NNGAPAFS--- 246 (425)
T ss_pred Ccceecccc-------CcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---------------ccCCccCC---
Confidence 445566677 66776554432 22 358889998876555443221 12234566
Q ss_pred CCCCceEEE-EEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEec-CCCc--EEEEEecCCceeee
Q 021036 204 QSPRLMLLA-VGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCS-QDNF--VRSWIFHGNSLSQV 279 (318)
Q Consensus 204 ~~~~~~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~--v~iwd~~~~~~~~~ 279 (318)
|||+.|+ +...||...||-+|..+..... +....+.-+.-.|+|+|++|+-.+ ..|. |.+.++.++....+
T Consensus 247 --pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri 321 (425)
T COG0823 247 --PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL 321 (425)
T ss_pred --CCCCEEEEEECCCCCccEEEEcCCCCccee---cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence 8887655 4557888777777777765322 332233333567999999876554 4444 66666666666555
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
....... ..-.|+|||++|+..
T Consensus 322 T~~~~~~---------------~~p~~SpdG~~i~~~ 343 (425)
T COG0823 322 TFSGGGN---------------SNPVWSPDGDKIVFE 343 (425)
T ss_pred eccCCCC---------------cCccCCCCCCEEEEE
Confidence 5444322 266889999888764
No 337
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.67 E-value=0.0017 Score=59.43 Aligned_cols=68 Identities=22% Similarity=0.347 Sum_probs=58.6
Q ss_pred eeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeee
Q 021036 59 AVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAV 138 (318)
Q Consensus 59 ~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p 138 (318)
.+.|+|.. -.|+.|-.-|.+.+|..++.+ .......|..+|..+.|
T Consensus 64 SLCWHpe~------------------~vLa~gwe~g~~~v~~~~~~e--------------~htv~~th~a~i~~l~w-- 109 (1416)
T KOG3617|consen 64 SLCWHPEE------------------FVLAQGWEMGVSDVQKTNTTE--------------THTVVETHPAPIQGLDW-- 109 (1416)
T ss_pred hhccChHH------------------HHHhhccccceeEEEecCCce--------------eeeeccCCCCCceeEEe--
Confidence 38898887 789999999999999988743 33345679999999999
Q ss_pred ecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 139 LSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 139 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
+++|..++|+..-|.|.+|...
T Consensus 110 -----S~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 110 -----SHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -----cCCCCeEEEcCCCceeEEEEee
Confidence 9999999999999999999876
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.0005 Score=61.33 Aligned_cols=112 Identities=25% Similarity=0.270 Sum_probs=82.0
Q ss_pred CCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 144 SNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 144 ~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
...+++++.|+.-|.|.+|+-..++....-.. +....+..++++ ++..++|.|+..|.|.+|
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~-------------~~~~~~~~~~vs-----~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNE-------------GATGITCVRSVS-----SVEYLVAAGTASGRVSVF 103 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhccccc-------------CccceEEEEEec-----chhHhhhhhcCCceEEee
Confidence 56788999999999999999776654332211 112245566777 889999999999999999
Q ss_pred eeccCCCeee-Eeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 224 KCDISCNKFD-KVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 224 ~~~~~~~~~~-~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.+..... .+... +.|...|++++|++++..+++|...|+|..-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 6654322111 11111 23778999999999999999999999998887765
No 339
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.65 E-value=0.011 Score=48.69 Aligned_cols=140 Identities=16% Similarity=0.095 Sum_probs=91.7
Q ss_pred CCcEEEEEeCCC-cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-----CCCc
Q 021036 146 PQVLLVTGSSDG-SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-----GSGS 219 (318)
Q Consensus 146 ~~~~l~s~~~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-----~dg~ 219 (318)
.+..++.+-.-| ...+||.++++....+..... .- -.-.-.|+ +||++|++.- ..|.
T Consensus 16 ~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g------RH------FyGHg~fs-----~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 16 RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG------RH------FYGHGVFS-----PDGRLLYTTENDYETGRGV 78 (305)
T ss_pred CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC------CE------EecCEEEc-----CCCCEEEEeccccCCCcEE
Confidence 556677777665 577899999988876654332 11 11245688 9999999864 4678
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecC------------------CCcEEEEEecCCceeeeec
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQ------------------DNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~------------------d~~v~iwd~~~~~~~~~~~ 281 (318)
|-||| .. ..++.+.++..|.-....+.+.|||+.|+.+.. +-.+..-|..++.+.
T Consensus 79 IgVyd--~~-~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll---- 151 (305)
T PF07433_consen 79 IGVYD--AA-RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL---- 151 (305)
T ss_pred EEEEE--Cc-CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee----
Confidence 99995 44 344578888888777788999999987776631 122223333333322
Q ss_pred CCCCCCccccccC--CCcceeeeEEEEcCCCcEEEEEe
Q 021036 282 PTNTPGLQSCTDL--PDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 282 ~~~~~~~~~~~~~--~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....+ ..|...+..+++.++|..++..+
T Consensus 152 --------~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 152 --------EQVELPPDLHQLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred --------eeeecCccccccceeeEEecCCCcEEEEEe
Confidence 22233 23667899999999998776543
No 340
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.64 E-value=0.0026 Score=59.21 Aligned_cols=152 Identities=14% Similarity=0.113 Sum_probs=95.9
Q ss_pred CccEEEEe-cCCCcEEEEEccCCccccccccccCCceeEEeeecccccc-EEEEEeeeecCCCCCCCcEEEEEeCCCcEE
Q 021036 83 WFSILAVG-GRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW-ITSISLAVLSSDSSNPQVLLVTGSSDGSVR 160 (318)
Q Consensus 83 ~~~~l~~g-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~ 160 (318)
+.++|+.. .....|+-.|++.| +.+..+..|... |..++ |-.-........-+.|-.+..+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~G--------------KVV~eW~~~~~~~v~~~~--p~~K~aqlt~e~tflGls~n~lf 555 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERG--------------KVVEEWKVHDDIPVVDIA--PDSKFAQLTNEQTFLGLSDNSLF 555 (794)
T ss_pred ccceEeecCCCCCceEEEecCCC--------------cEEEEeecCCCcceeEec--ccccccccCCCceEEEECCCceE
Confidence 34565554 35577888899885 466777776643 55443 32211111234567788889999
Q ss_pred EEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 161 IWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 161 iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
.||.|-.. ++.. ..+. .......+|++-. ...+||+|+.+|.||+|| . .++ +....+
T Consensus 556 riDpR~~~~k~v~~-~~k~----------Y~~~~~Fs~~aTt------~~G~iavgs~~G~IRLyd--~-~g~-~AKT~l 614 (794)
T PF08553_consen 556 RIDPRLSGNKLVDS-QSKQ----------YSSKNNFSCFATT------EDGYIAVGSNKGDIRLYD--R-LGK-RAKTAL 614 (794)
T ss_pred EeccCCCCCceeec-cccc----------cccCCCceEEEec------CCceEEEEeCCCcEEeec--c-cch-hhhhcC
Confidence 99998532 2211 1111 1223356777775 445799999999999995 2 222 133345
Q ss_pred ecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 239 NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 239 ~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+-..+|.+|+.+.||+++++.+ +..+.++++.
T Consensus 615 p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 615 PGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 67789999999999999887655 4567777763
No 341
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.63 E-value=0.0097 Score=52.08 Aligned_cols=137 Identities=9% Similarity=-0.060 Sum_probs=80.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.++.+|.+..+|..+++. +-... ......+.. .+..++.++.+|.+..+|
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~--------------~W~~~--~~~~~~~~~---------~~~~vy~~~~~g~l~ald 310 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI--------------VWKRE--YGSVNDFAV---------DGGRIYLVDQNDRVYALD 310 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE--------------EEeec--CCCccCcEE---------ECCEEEEEcCCCeEEEEE
Confidence 35667777899999999998752 11111 111111222 345677788899999999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccC
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQ 243 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~ 243 (318)
..+|+.+........ .......+. +..++.++.+|.++.. |..+++ .+.+.+-...
T Consensus 311 ~~tG~~~W~~~~~~~-------------~~~~sp~v~-------~g~l~v~~~~G~l~~l--d~~tG~--~~~~~~~~~~ 366 (394)
T PRK11138 311 TRGGVELWSQSDLLH-------------RLLTAPVLY-------NGYLVVGDSEGYLHWI--NREDGR--FVAQQKVDSS 366 (394)
T ss_pred CCCCcEEEcccccCC-------------CcccCCEEE-------CCEEEEEeCCCEEEEE--ECCCCC--EEEEEEcCCC
Confidence 999887654321110 011111222 4567788889999887 666776 4444332222
Q ss_pred ceeE-EEEcCCCCEEEEecCCCcEEEEEe
Q 021036 244 VVTG-LAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 244 ~v~~-~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.+.+ ..+ .+..|+.++.||.|+.+++
T Consensus 367 ~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 367 GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2221 111 2457888899999888764
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00055 Score=60.34 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=62.4
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCcee-EEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVT-GLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
.+.-+.|+ |.-.++|++..+|.+-+. +.. ++.+.++.-++..++ +++|.|||+.||.|-.||+|++-|+
T Consensus 22 ~i~~~ewn-----P~~dLiA~~t~~gelli~--R~n---~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWN-----PKMDLIATRTEKGELLIH--RLN---WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ceEEEEEc-----CccchhheeccCCcEEEE--Eec---cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEc
Confidence 56778888 999999999999999998 333 336677766676777 9999999999999999999999999
Q ss_pred cCCcee
Q 021036 272 HGNSLS 277 (318)
Q Consensus 272 ~~~~~~ 277 (318)
.++...
T Consensus 92 e~~~~l 97 (665)
T KOG4640|consen 92 EKGGRL 97 (665)
T ss_pred cCCCce
Confidence 876543
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.49 E-value=0.02 Score=51.71 Aligned_cols=75 Identities=11% Similarity=-0.020 Sum_probs=50.9
Q ss_pred ceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCC----ee----eEeeeeecccCceeEEEEcCCCCEEEEecCC
Q 021036 193 PISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCN----KF----DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~----~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d 263 (318)
....+.++ |||+++++++ .+++|.|.|+..... +. ..+.+..-..+ ....+|+++|....|--.|
T Consensus 322 sPHGV~vS-----PDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~d 395 (635)
T PRK02888 322 NPHGVNTS-----PDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLD 395 (635)
T ss_pred CccceEEC-----CCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeec
Confidence 45678888 9999887776 589999996432111 00 01222222223 3467899999888888899
Q ss_pred CcEEEEEecC
Q 021036 264 NFVRSWIFHG 273 (318)
Q Consensus 264 ~~v~iwd~~~ 273 (318)
..|..|++..
T Consensus 396 sqv~kwn~~~ 405 (635)
T PRK02888 396 SQIVKWNIEA 405 (635)
T ss_pred ceeEEEehHH
Confidence 9999999875
No 344
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.45 E-value=0.017 Score=39.81 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=62.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
.+.|++|+.|..||+|+-+. .+..+.. .+.|.++.. ... ..|+.+..+|+|.+|+
T Consensus 15 ~~eLlvGs~D~~IRvf~~~e----------------~~~Ei~e-~~~v~~L~~-------~~~-~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 15 ENELLVGSDDFEIRVFKGDE----------------IVAEITE-TDKVTSLCS-------LGG-GRFAYALANGTVGVYD 69 (111)
T ss_pred cceEEEecCCcEEEEEeCCc----------------EEEEEec-ccceEEEEE-------cCC-CEEEEEecCCEEEEEe
Confidence 47899999999999998764 4444543 467788876 344 5799999999999997
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCc-eEEEEEeCCCcEEE
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRL-MLLAVGKGSGSFDL 222 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~-~~l~~~~~dg~i~v 222 (318)
-. +.+...+... .+.++.+. +.+ .+| ..|++|-.+|.|-+
T Consensus 70 ~~--~RlWRiKSK~---------------~~~~~~~~-D~~-gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 RS--QRLWRIKSKN---------------QVTSMAFY-DIN-GDGVPELIVGWSNGKVEV 110 (111)
T ss_pred Cc--ceeeeeccCC---------------CeEEEEEE-cCC-CCCceEEEEEecCCeEEe
Confidence 53 3333333221 34455443 111 222 47888888887754
No 345
>PHA02713 hypothetical protein; Provisional
Probab=97.44 E-value=0.0075 Score=55.11 Aligned_cols=72 Identities=4% Similarity=0.046 Sum_probs=47.7
Q ss_pred CCceEEEEEeCCC------cEEEeeeccCC-CeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC--cEEEEEecCCce
Q 021036 206 PRLMLLAVGKGSG------SFDLWKCDISC-NKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN--FVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~dg------~i~vw~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~--~v~iwd~~~~~~ 276 (318)
-++++.+.|+.++ .+..| |..+ .+|..+..+.........+.+ +++..++|+.|+ .+..||..+++.
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Y--dp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRY--NTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEe--cCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCcccccc
Confidence 3677888887542 35667 7777 678777666544433333333 578889999888 788888887776
Q ss_pred eeeec
Q 021036 277 SQVSI 281 (318)
Q Consensus 277 ~~~~~ 281 (318)
..+..
T Consensus 538 ~~~~~ 542 (557)
T PHA02713 538 NHICH 542 (557)
T ss_pred cchhh
Confidence 65443
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.42 E-value=0.021 Score=50.34 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=68.9
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++++++ .||.-.|+..... +... .+.-....| ...+ .+++-...++|.++.-
T Consensus 45 r~v~V~-g~geY~iyt~~~~--------------r~k~-----~G~g~~~vw-------~~~n-~yAv~~~~~~I~I~kn 96 (443)
T PF04053_consen 45 RFVLVC-GDGEYEIYTALAW--------------RNKA-----FGSGLSFVW-------SSRN-RYAVLESSSTIKIYKN 96 (443)
T ss_dssp SEEEEE-ETTEEEEEETTTT--------------EEEE-----EEE-SEEEE--------TSS-EEEEE-TTS-EEEEET
T ss_pred CEEEEE-cCCEEEEEEccCC--------------cccc-----cCceeEEEE-------ecCc-cEEEEECCCeEEEEEc
Confidence 888884 5778888874331 1111 233456788 5544 4666666889999743
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCc
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQV 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~ 244 (318)
-..+....+.. +...-.+- + |.+|+..+ ++.|.+|| ..+++ .+.++.. .+
T Consensus 97 ~~~~~~k~i~~-----------------~~~~~~If-----~-G~LL~~~~-~~~i~~yD--w~~~~--~i~~i~v--~~ 146 (443)
T PF04053_consen 97 FKNEVVKSIKL-----------------PFSVEKIF-----G-GNLLGVKS-SDFICFYD--WETGK--LIRRIDV--SA 146 (443)
T ss_dssp TEE-TT----------------------SS-EEEEE-------SSSEEEEE-TTEEEEE---TTT----EEEEESS---E
T ss_pred CccccceEEcC-----------------CcccceEE-----c-CcEEEEEC-CCCEEEEE--hhHcc--eeeEEec--CC
Confidence 33332222221 11111222 3 67777776 44899995 45555 5666643 24
Q ss_pred eeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 245 VTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 245 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
|..+.|+++|.+++-.+.+ .+.|++....
T Consensus 147 vk~V~Ws~~g~~val~t~~-~i~il~~~~~ 175 (443)
T PF04053_consen 147 VKYVIWSDDGELVALVTKD-SIYILKYNLE 175 (443)
T ss_dssp -EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence 8899999999999888755 6777765443
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.41 E-value=0.078 Score=46.57 Aligned_cols=31 Identities=6% Similarity=-0.117 Sum_probs=26.9
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+++..++.||+|+++|.-..+|.+.+.+..-
T Consensus 217 ~~i~~iavSpng~~iAl~t~~g~l~v~ssDf 247 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFTDSGNLWVVSSDF 247 (410)
T ss_pred CCeEEEEECCCCCEEEEEECCCCEEEEECcc
Confidence 5799999999999999999999998887543
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.34 E-value=0.00061 Score=62.17 Aligned_cols=104 Identities=24% Similarity=0.368 Sum_probs=74.9
Q ss_pred CCCCcEEEEEe----CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc
Q 021036 144 SNPQVLLVTGS----SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS 219 (318)
Q Consensus 144 ~~~~~~l~s~~----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~ 219 (318)
.|...+|++++ ..|.|.||- ++|++...... ...+.+++|+ |..-.|+.|-.-|.
T Consensus 24 HPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~---------------P~hatSLCWH-----pe~~vLa~gwe~g~ 82 (1416)
T KOG3617|consen 24 HPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY---------------PVHATSLCWH-----PEEFVLAQGWEMGV 82 (1416)
T ss_pred CCCCceeEEEEecCCCCceEEEEe-cCCCCCccccc---------------ceehhhhccC-----hHHHHHhhccccce
Confidence 44445677665 457888873 34543322211 1135679999 88899999999999
Q ss_pred EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 220 FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 220 i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+.+| ...+.+ .-.....|..+|..+.||++|..++++..-|.|.+|...
T Consensus 83 ~~v~--~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 83 SDVQ--KTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eEEE--ecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9999 443433 222334699999999999999999999999999999875
No 349
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.23 E-value=0.15 Score=46.31 Aligned_cols=34 Identities=12% Similarity=-0.031 Sum_probs=26.3
Q ss_pred cCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCc
Q 021036 242 DQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNS 275 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~ 275 (318)
......+.++|||++++++ ..+.+|.+.|+.+.+
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k 354 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLD 354 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhh
Confidence 3455789999999976554 568999999998743
No 350
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.01 Score=51.75 Aligned_cols=135 Identities=12% Similarity=0.045 Sum_probs=79.5
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc--CCCCceEEEEEeCCCcEEEeeec
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV--QSPRLMLLAVGKGSGSFDLWKCD 226 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~--~~~~~~~l~~~~~dg~i~vw~~~ 226 (318)
+|.++..-..++-.|++.|+.+.....+. .|+-+.+.+.. ..-+...-+.|-.|..|.-||..
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~---------------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpR 412 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED---------------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPR 412 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC---------------CcceeeccCCcchhcccccccEEeecCCceEEeccc
Confidence 34445555678888999998887766544 23444444100 00112233556678888888554
Q ss_pred cCCCeeeEeeeeeccc----CceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeee
Q 021036 227 ISCNKFDKVGSYNAHD----QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCL 302 (318)
Q Consensus 227 ~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 302 (318)
.+... .+...++|. ....|.+-..+| +|+.||.+|.||+||.-..... . -+++-..+|.
T Consensus 413 v~~~~--kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AK-T-------------AlPgLG~~I~ 475 (644)
T KOG2395|consen 413 VQGKN--KLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAK-T-------------ALPGLGDAIK 475 (644)
T ss_pred ccCcc--eeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhh-h-------------cccccCCcee
Confidence 44432 222223332 234455544455 7999999999999997332222 1 2233345899
Q ss_pred EEEEcCCCcEEEE
Q 021036 303 GMAVSPGNLVVAM 315 (318)
Q Consensus 303 ~v~~sp~~~~l~~ 315 (318)
.|..+.||++|+.
T Consensus 476 hVdvtadGKwil~ 488 (644)
T KOG2395|consen 476 HVDVTADGKWILA 488 (644)
T ss_pred eEEeeccCcEEEE
Confidence 9999999998654
No 351
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.10 E-value=0.14 Score=43.41 Aligned_cols=152 Identities=15% Similarity=0.107 Sum_probs=83.5
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeC----------CCcEEEEECCCc----ceeeeecccccccccceeeeeecccce
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSS----------DGSVRIWDGYIQ----ELQKSAEAHCVPFSLLKEVVTVNTVPI 194 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~----------d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v 194 (318)
..+.+++...+..+......+|+.|+. .|.|.++++... ..+..+. .....++|
T Consensus 24 E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~------------~~~~~g~V 91 (321)
T PF03178_consen 24 EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH------------STEVKGPV 91 (321)
T ss_dssp EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE------------EEEESS-E
T ss_pred ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE------------EEeecCcc
Confidence 455666654443321113567887753 288999999874 1111111 12235688
Q ss_pred eEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC-
Q 021036 195 SVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG- 273 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~- 273 (318)
++++-- ++. |+++. ++.|.+|+++... ++.....+.. ...+.++... +.+++.|.....+.++..+.
T Consensus 92 ~ai~~~------~~~-lv~~~-g~~l~v~~l~~~~-~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 92 TAICSF------NGR-LVVAV-GNKLYVYDLDNSK-TLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEE------TTE-EEEEE-TTEEEEEEEETTS-SEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETT
T ss_pred eEhhhh------CCE-EEEee-cCEEEEEEccCcc-cchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEcc
Confidence 888875 455 44433 5899999776554 2334444332 2255555444 66999999888888886654
Q ss_pred -CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 274 -NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 274 -~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
..+..+.-.... ..++++.|-+|+..++.++
T Consensus 160 ~~~l~~va~d~~~-------------~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 160 NNKLILVARDYQP-------------RWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp TE-EEEEEEESS--------------BEEEEEEEE-SSSEEEEEE
T ss_pred CCEEEEEEecCCC-------------ccEEEEEEecCCcEEEEEc
Confidence 334333322222 2677888876655655554
No 352
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.09 E-value=0.034 Score=49.03 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=72.6
Q ss_pred eeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec
Q 021036 123 LFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP 202 (318)
Q Consensus 123 ~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 202 (318)
.+.........+.+ +|+|+.++. +.||.-.|+......... .+.-...+|.
T Consensus 27 ~lg~~~~~p~~ls~-------npngr~v~V-~g~geY~iyt~~~~r~k~-------------------~G~g~~~vw~-- 77 (443)
T PF04053_consen 27 ELGSCEIYPQSLSH-------NPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------FGSGLSFVWS-- 77 (443)
T ss_dssp EEEE-SS--SEEEE--------TTSSEEEE-EETTEEEEEETTTTEEEE-------------------EEE-SEEEE---
T ss_pred cCCCCCcCCeeEEE-------CCCCCEEEE-EcCCEEEEEEccCCcccc-------------------cCceeEEEEe--
Confidence 33344455788899 899998888 457888888743322211 1234467787
Q ss_pred cCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC
Q 021036 203 VQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP 282 (318)
Q Consensus 203 ~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 282 (318)
+. ..+|+-..++.|.++. +.... ....++. ...+..+ |. |..|+..+.+ .|.+||..++........
T Consensus 78 ---~~-n~yAv~~~~~~I~I~k-n~~~~---~~k~i~~-~~~~~~I-f~--G~LL~~~~~~-~i~~yDw~~~~~i~~i~v 144 (443)
T PF04053_consen 78 ---SR-NRYAVLESSSTIKIYK-NFKNE---VVKSIKL-PFSVEKI-FG--GNLLGVKSSD-FICFYDWETGKLIRRIDV 144 (443)
T ss_dssp ---TS-SEEEEE-TTS-EEEEE-TTEE----TT------SS-EEEE-E---SSSEEEEETT-EEEEE-TTT--EEEEESS
T ss_pred ---cC-ccEEEEECCCeEEEEE-cCccc---cceEEcC-CcccceE-Ec--CcEEEEECCC-CEEEEEhhHcceeeEEec
Confidence 64 4477777789999972 22111 1112221 1123333 22 7777776655 899999998776543322
Q ss_pred CCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 283 TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 283 ~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+ +|..|.|+++|.++|-.
T Consensus 145 ~----------------~vk~V~Ws~~g~~val~ 162 (443)
T PF04053_consen 145 S----------------AVKYVIWSDDGELVALV 162 (443)
T ss_dssp -----------------E-EEEEE-TTSSEEEEE
T ss_pred C----------------CCcEEEEECCCCEEEEE
Confidence 2 57899999999988754
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.17 Score=44.05 Aligned_cols=182 Identities=15% Similarity=0.157 Sum_probs=110.2
Q ss_pred ccCCCCCcc-EEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC
Q 021036 77 QNGSSNWFS-ILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS 155 (318)
Q Consensus 77 ~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~ 155 (318)
.+++++.++ ..+....++.|.+.|..+... ...... ...-..+++ +++++.+..+..
T Consensus 78 ~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~--------------~~~~~v-G~~P~~~~~-------~~~~~~vYV~n~ 135 (381)
T COG3391 78 GVAVNPAGNKVYVTTGDSNTVSVIDTATNTV--------------LGSIPV-GLGPVGLAV-------DPDGKYVYVANA 135 (381)
T ss_pred ceeeCCCCCeEEEecCCCCeEEEEcCcccce--------------eeEeee-ccCCceEEE-------CCCCCEEEEEec
Confidence 344555545 555556678999999766432 222211 114467888 778866666655
Q ss_pred ---CCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCe
Q 021036 156 ---DGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNK 231 (318)
Q Consensus 156 ---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~ 231 (318)
++++.+.|..+++......... .+ ..++++ |+|..++... .++.|.+. +.....
T Consensus 136 ~~~~~~vsvid~~t~~~~~~~~vG~--------------~P-~~~a~~-----p~g~~vyv~~~~~~~v~vi--~~~~~~ 193 (381)
T COG3391 136 GNGNNTVSVIDAATNKVTATIPVGN--------------TP-TGVAVD-----PDGNKVYVTNSDDNTVSVI--DTSGNS 193 (381)
T ss_pred ccCCceEEEEeCCCCeEEEEEecCC--------------Cc-ceEEEC-----CCCCeEEEEecCCCeEEEE--eCCCcc
Confidence 6888888888887776643322 13 678888 9998666665 78888888 444433
Q ss_pred eeEeee---eecccCceeEEEEcCCCCEEEEecCC---CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEE
Q 021036 232 FDKVGS---YNAHDQVVTGLAWAFDGCCLYSCSQD---NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMA 305 (318)
Q Consensus 232 ~~~~~~---~~~h~~~v~~~~~~~~~~~l~s~~~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~ 305 (318)
... .. ...-......+.++|+|.++...... +.+...|..++........... . ....+.
T Consensus 194 v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~------------~-~~~~v~ 259 (381)
T COG3391 194 VVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS------------G-APRGVA 259 (381)
T ss_pred eec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc------------C-CCCcee
Confidence 111 11 11112234678899999965544333 5898988888776654222111 0 125677
Q ss_pred EcCCCcEEEEE
Q 021036 306 VSPGNLVVAMV 316 (318)
Q Consensus 306 ~sp~~~~l~~~ 316 (318)
.+|+|.++.+.
T Consensus 260 ~~p~g~~~yv~ 270 (381)
T COG3391 260 VDPAGKAAYVA 270 (381)
T ss_pred ECCCCCEEEEE
Confidence 78888776554
No 354
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.14 Score=42.26 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=89.8
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++.|+.|+.+| +.+++..... ...+.. +...|..+.. .++-+.|++-+ |+.+.++
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~-------------~~~~i~--~~~~I~ql~v-------l~~~~~llvLs-d~~l~~~ 61 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS-------------KPTRIL--KLSSITQLSV-------LPELNLLLVLS-DGQLYVY 61 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc-------------cceeEe--ecceEEEEEE-------ecccCEEEEEc-CCccEEE
Confidence 468999999999 8889883321 111222 2234999998 55555555554 5999999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeeecc
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNAH 241 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~h 241 (318)
++..............+..............+...+.. ....+...+.......|.+|.+......+ ....++. -
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~---~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-l 137 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVN---GGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-L 137 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeec---cccccceEEEEEECCEEEEEEEECCcccccceeEEEE-c
Confidence 99865433311100000000000000011133333300 01333334444445699999876643443 3555554 3
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
...+..++|. +..++.|..+ ...+.|+.++....+.
T Consensus 138 p~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 138 PDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred CCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 4678899998 5567777644 4678888876655443
No 355
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.02 E-value=0.17 Score=44.38 Aligned_cols=193 Identities=14% Similarity=-0.005 Sum_probs=99.4
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSL 98 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i 98 (318)
.++.++.++.+.-+|.++++.+-........ .-+|.- .+..++.+..+|.+.-
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~-----------~ssP~v----------------~~~~v~v~~~~g~l~a 174 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVAGEA-----------LSRPVV----------------SDGLVLVHTSNGMLQA 174 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCCCce-----------ecCCEE----------------ECCEEEEECCCCEEEE
Confidence 3566778888888999888765444332100 000100 0246677888999999
Q ss_pred EEccCCccccccccccCCceeEEeeeccccccEEE-EEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 99 WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITS-ISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 99 w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+|.++|+. +-.+......+.. ..-.|. ..+..++.++.++.+..+|..+|+.........
T Consensus 175 ld~~tG~~--------------~W~~~~~~~~~~~~~~~sP~-----v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 175 LNESDGAV--------------KWTVNLDVPSLTLRGESAPA-----TAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred EEccCCCE--------------eeeecCCCCcccccCCCCCE-----EECCEEEEEcCCCEEEEEEccCChhhheecccc
Confidence 99998763 2222211000000 000000 012346677788999999999988776543211
Q ss_pred ccc-ccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE
Q 021036 178 VPF-SLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC 256 (318)
Q Consensus 178 ~~~-~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 256 (318)
... ............+ .+ .+..++.++.+|.+..+ |..+++ .+.+.. ......+. ..+..
T Consensus 236 ~~~~~~~~~~~~~~~sP----~v-------~~~~vy~~~~~g~l~al--d~~tG~--~~W~~~--~~~~~~~~--~~~~~ 296 (394)
T PRK11138 236 PTGATEIDRLVDVDTTP----VV-------VGGVVYALAYNGNLVAL--DLRSGQ--IVWKRE--YGSVNDFA--VDGGR 296 (394)
T ss_pred CCCccchhcccccCCCc----EE-------ECCEEEEEEcCCeEEEE--ECCCCC--EEEeec--CCCccCcE--EECCE
Confidence 100 0000000000001 11 23456666678887777 666665 222221 11111111 23556
Q ss_pred EEEecCCCcEEEEEecCCce
Q 021036 257 LYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 257 l~s~~~d~~v~iwd~~~~~~ 276 (318)
++.++.+|.+..+|..+++.
T Consensus 297 vy~~~~~g~l~ald~~tG~~ 316 (394)
T PRK11138 297 IYLVDQNDRVYALDTRGGVE 316 (394)
T ss_pred EEEEcCCCeEEEEECCCCcE
Confidence 77778889999998877654
No 356
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.022 Score=49.75 Aligned_cols=153 Identities=13% Similarity=0.098 Sum_probs=91.6
Q ss_pred ccEE-EEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSIL-AVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++| .++.....++--|++.|+ .+..++-+.+ |+-+.+.|-.-...-....=+.|-.|..|.-|
T Consensus 345 snlil~~~~~~~~l~klDIE~GK--------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfri 409 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGK--------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRI 409 (644)
T ss_pred cceEeeCCCCcCcceeeecccce--------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEe
Confidence 3444 445566678888888854 5667776665 66666633211111111223446678899999
Q ss_pred ECCCcce--eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec
Q 021036 163 DGYIQEL--QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA 240 (318)
Q Consensus 163 d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~ 240 (318)
|.+-... +.....+. .......+|.+-. ...++++|+.+|.|++|+ ..... .-..+.+
T Consensus 410 DpRv~~~~kl~~~q~kq----------y~~k~nFsc~aTT------~sG~IvvgS~~GdIRLYd--ri~~~--AKTAlPg 469 (644)
T KOG2395|consen 410 DPRVQGKNKLAVVQSKQ----------YSTKNNFSCFATT------ESGYIVVGSLKGDIRLYD--RIGRR--AKTALPG 469 (644)
T ss_pred cccccCcceeeeeeccc----------cccccccceeeec------CCceEEEeecCCcEEeeh--hhhhh--hhhcccc
Confidence 9984322 11111111 0112234555553 445899999999999994 32221 2334677
Q ss_pred ccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 241 HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
-..+|..|..+.+|++|+..+ +..+.+-++.
T Consensus 470 LG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 470 LGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 889999999999999877554 5566677664
No 357
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.93 E-value=0.082 Score=48.46 Aligned_cols=153 Identities=18% Similarity=0.156 Sum_probs=86.6
Q ss_pred ccEEEEecCCCc-----EEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCC-
Q 021036 84 FSILAVGGRSGK-----VSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDG- 157 (318)
Q Consensus 84 ~~~l~~g~~dg~-----i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~- 157 (318)
|.+.++|+.||. |-.||..+.+. ..+..+........... -+|.+.+.|+.++
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W------------~~va~m~~~r~~~gv~~---------~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKW------------TPVAPMLTRRSGHGVAV---------LGGKLYIIGGGDGS 439 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcc------------cccCCCCcceeeeEEEE---------ECCEEEEEcCcCCC
Confidence 478889999875 55666666542 22222222122222333 3778888888654
Q ss_pred -----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-----EEEeeecc
Q 021036 158 -----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-----FDLWKCDI 227 (318)
Q Consensus 158 -----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-----i~vw~~~~ 227 (318)
++..||..+++-...-..... . .-..++. -++.+.+.|+.|+. |..| |.
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~------------R-~~~g~a~------~~~~iYvvGG~~~~~~~~~VE~y--dp 498 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTR------------R-SGFGVAV------LNGKIYVVGGFDGTSALSSVERY--DP 498 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccc------------c-ccceEEE------ECCEEEEECCccCCCccceEEEE--cC
Confidence 466777766543322211111 0 1112333 36889999998873 6667 77
Q ss_pred CCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC-----cEEEEEecCCceeeee
Q 021036 228 SCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-----FVRSWIFHGNSLSQVS 280 (318)
Q Consensus 228 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~ 280 (318)
.+.+|..+..+......+..+.+ ++...+.|+.|| +|..||..+++.....
T Consensus 499 ~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~ 554 (571)
T KOG4441|consen 499 ETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETDTWTEVT 554 (571)
T ss_pred CCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCCceeeCC
Confidence 78887776555544443333332 466778888774 4667776666655433
No 358
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.31 Score=42.46 Aligned_cols=197 Identities=14% Similarity=0.073 Sum_probs=116.3
Q ss_pred CccceEEeeCCCceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC---
Q 021036 16 NTHPTVAASKSKGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR--- 92 (318)
Q Consensus 16 ~~~~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~--- 92 (318)
.....++...+..+.+.|..+.+....+.... ....++++|++ +.+..+..
T Consensus 85 ~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--------~P~~~~~~~~~------------------~~vYV~n~~~~ 138 (381)
T COG3391 85 GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--------GPVGLAVDPDG------------------KYVYVANAGNG 138 (381)
T ss_pred CCeEEEecCCCCeEEEEcCcccceeeEeeecc--------CCceEEECCCC------------------CEEEEEecccC
Confidence 33345555567888888877766655554422 12236677766 55555443
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe-CCCcEEEEECCCcceee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS-SDGSVRIWDGYIQELQK 171 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~-~d~~v~iwd~~~~~~~~ 171 (318)
++.+.+.|..++. .......-..+ ..+++ .++|..++... .+++|.+.|........
T Consensus 139 ~~~vsvid~~t~~--------------~~~~~~vG~~P-~~~a~-------~p~g~~vyv~~~~~~~v~vi~~~~~~v~~ 196 (381)
T COG3391 139 NNTVSVIDAATNK--------------VTATIPVGNTP-TGVAV-------DPDGNKVYVTNSDDNTVSVIDTSGNSVVR 196 (381)
T ss_pred CceEEEEeCCCCe--------------EEEEEecCCCc-ceEEE-------CCCCCeEEEEecCCCeEEEEeCCCcceec
Confidence 6788888887744 33333322234 78899 88888666555 68999999976654442
Q ss_pred eecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC---CcEEEeeeccCCCeeeEeeeeecccCceeEE
Q 021036 172 SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS---GSFDLWKCDISCNKFDKVGSYNAHDQVVTGL 248 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~ 248 (318)
-..... ..-......+.++ ++|..+.+.... +.+... +..++.........+.. ....+
T Consensus 197 -~~~~~~---------~~~~~~P~~i~v~-----~~g~~~yV~~~~~~~~~v~~i--d~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 197 -GSVGSL---------VGVGTGPAGIAVD-----PDGNRVYVANDGSGSNNVLKI--DTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred -cccccc---------cccCCCCceEEEC-----CCCCEEEEEeccCCCceEEEE--eCCCceEEEeccccccC-CCCce
Confidence 110000 0011133567787 888866666544 366665 66565421110111122 44668
Q ss_pred EEcCCCCEEEEe-cCCCcEEEEEecCCceee
Q 021036 249 AWAFDGCCLYSC-SQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 249 ~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~~ 278 (318)
..+|+|.++.+. +..+.+.+.|..+.....
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~ 289 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVK 289 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceee
Confidence 899999987776 444889999988765544
No 359
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.78 E-value=0.29 Score=41.93 Aligned_cols=208 Identities=12% Similarity=0.076 Sum_probs=87.7
Q ss_pred eeeccCcCCCCCccceEEeeCCCceeEe--ecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCC
Q 021036 5 VDFTSNKMKDSNTHPTVAASKSKGNSIT--KIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSN 82 (318)
Q Consensus 5 ~~~~~~~~~~~~~~~~~t~s~d~~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~ 82 (318)
+.|+.+.+.+.....+..+..|+.-.+| |+.+++..|.-.... .... ...++|..
T Consensus 36 ~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g----~~~~---g~~~s~~~---------------- 92 (386)
T PF14583_consen 36 LYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPG----DNTF---GGFLSPDD---------------- 92 (386)
T ss_dssp --TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-----B-TT---T-EE-TTS----------------
T ss_pred eeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCC----CCcc---ceEEecCC----------------
Confidence 4566666666666666666667776666 888877655443221 1111 14455655
Q ss_pred CccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeC---C---
Q 021036 83 WFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSS---D--- 156 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~---d--- 156 (318)
+.++-......|+-.|+++.+ .+.+ +......+-...|.. +.++.+++-.-. |
T Consensus 93 --~~~~Yv~~~~~l~~vdL~T~e------------~~~v--y~~p~~~~g~gt~v~-----n~d~t~~~g~e~~~~d~~~ 151 (386)
T PF14583_consen 93 --RALYYVKNGRSLRRVDLDTLE------------ERVV--YEVPDDWKGYGTWVA-----NSDCTKLVGIEISREDWKP 151 (386)
T ss_dssp --SEEEEEETTTEEEEEETTT--------------EEEE--EE--TTEEEEEEEEE------TTSSEEEEEEEEGGG---
T ss_pred --CeEEEEECCCeEEEEECCcCc------------EEEE--EECCcccccccceee-----CCCccEEEEEEEeehhccC
Confidence 555444445678888888854 2223 333344444445511 233444332211 0
Q ss_pred ----------------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe---CC
Q 021036 157 ----------------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK---GS 217 (318)
Q Consensus 157 ----------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~---~d 217 (318)
..|.--|+.+|+.... -.....+..+.++ |.+..+|+-|. .+
T Consensus 152 l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v---------------~~~~~wlgH~~fs----P~dp~li~fCHEGpw~ 212 (386)
T PF14583_consen 152 LTKWKGFREFYEARPHCRIFTIDLKTGERKVV---------------FEDTDWLGHVQFS----PTDPTLIMFCHEGPWD 212 (386)
T ss_dssp --SHHHHHHHHHC---EEEEEEETTT--EEEE---------------EEESS-EEEEEEE----TTEEEEEEEEE-S-TT
T ss_pred ccccHHHHHHHhhCCCceEEEEECCCCceeEE---------------EecCccccCcccC----CCCCCEEEEeccCCcc
Confidence 1122223333332221 2234467888999 34556666654 23
Q ss_pred Cc-EEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEE-----ecCCCcEEEEEecCCce
Q 021036 218 GS-FDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYS-----CSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 218 g~-i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s-----~~~d~~v~iwd~~~~~~ 276 (318)
.. -+||-++.......++..-. -...+..=-|.|||..|.- ++.+..|.-+|+.++..
T Consensus 213 ~Vd~RiW~i~~dg~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 213 LVDQRIWTINTDGSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp TSS-SEEEEETTS---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred eeceEEEEEEcCCCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 32 47887776665544443321 1223333458888885543 22344566666666543
No 360
>PHA03098 kelch-like protein; Provisional
Probab=96.76 E-value=0.23 Score=45.42 Aligned_cols=71 Identities=11% Similarity=0.038 Sum_probs=41.9
Q ss_pred CceEEEEEeCCC--------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecC
Q 021036 207 RLMLLAVGKGSG--------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHG 273 (318)
Q Consensus 207 ~~~~l~~~~~dg--------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~ 273 (318)
++.+++.|+.++ .+.+| |..+.+|..+..+.........+.+ +++.++.|+.+ ..+.+||..+
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESY--NPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEe--cCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 567777776432 26666 7777777665543322222122222 56777777654 4788899888
Q ss_pred Cceeeeec
Q 021036 274 NSLSQVSI 281 (318)
Q Consensus 274 ~~~~~~~~ 281 (318)
+....+..
T Consensus 513 ~~W~~~~~ 520 (534)
T PHA03098 513 NTWTLFCK 520 (534)
T ss_pred CEEEecCC
Confidence 77665543
No 361
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.75 E-value=0.006 Score=35.00 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=28.8
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
...|..++|+|...+||.++.+|.|.++.+..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 45689999999999999999999999998844
No 362
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.26 Score=40.21 Aligned_cols=201 Identities=13% Similarity=0.060 Sum_probs=117.3
Q ss_pred ccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeee--ccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 75 VPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF--QAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 75 v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
+.+++++|+.+.|++......-.++=..+|+ .++++ .+. ..--.+.| ..++++.++
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~~Gd--------------lirtiPL~g~-~DpE~Iey-------ig~n~fvi~ 145 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGD--------------LIRTIPLTGF-SDPETIEY-------IGGNQFVIV 145 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEecCCc--------------eEEEeccccc-CChhHeEE-------ecCCEEEEE
Confidence 4444444444888887777776666655544 44443 332 22356888 777777777
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
-=.++.+.++.+........+.....+. ... .........++|+ |....|+.+-.-.-+.+|.++......
T Consensus 146 dER~~~l~~~~vd~~t~~~~~~~~~i~L---~~~-~k~N~GfEGlA~d-----~~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 146 DERDRALYLFTVDADTTVISAKVQKIPL---GTT-NKKNKGFEGLAWD-----PVDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred ehhcceEEEEEEcCCccEEeccceEEec---ccc-CCCCcCceeeecC-----CCCceEEEEEccCCcEEEEEecCCccc
Confidence 7788999998887664443332211100 000 1114467789999 888888888877788888654222111
Q ss_pred eEeeeeecc-------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEE
Q 021036 233 DKVGSYNAH-------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGM 304 (318)
Q Consensus 233 ~~~~~~~~h-------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v 304 (318)
.+.....+ -..|.++.|++. +.+|+-+.+++.+.-.|..++....+....... .+...-..-.++
T Consensus 217 -~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~------gL~~dipqaEGi 289 (316)
T COG3204 217 -SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNH------GLSSDIPQAEGI 289 (316)
T ss_pred -ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCC------CCcccCCCccee
Confidence 11111112 235678889874 667788888888888888776554444433221 111112244578
Q ss_pred EEcCCCcEE
Q 021036 305 AVSPGNLVV 313 (318)
Q Consensus 305 ~~sp~~~~l 313 (318)
+..++|.+-
T Consensus 290 amDd~g~lY 298 (316)
T COG3204 290 AMDDDGNLY 298 (316)
T ss_pred EECCCCCEE
Confidence 888877643
No 363
>PHA02713 hypothetical protein; Provisional
Probab=96.69 E-value=0.27 Score=45.20 Aligned_cols=112 Identities=6% Similarity=0.097 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCC-----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCC--
Q 021036 146 PQVLLVTGSSDG-----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSG-- 218 (318)
Q Consensus 146 ~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg-- 218 (318)
++.+.+.|+.++ ++..||..+.+-...-..... .... +++. -++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~------------r~~~-~~~~------~~g~IYviGG~~~~~ 411 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIA------------LSSY-GMCV------LDQYIYIIGGRTEHI 411 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcc------------cccc-cEEE------ECCEEEEEeCCCccc
Confidence 667778888654 477888776542221111100 0011 1222 3678888887553
Q ss_pred ---------------------cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC------CcEEEEEe
Q 021036 219 ---------------------SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD------NFVRSWIF 271 (318)
Q Consensus 219 ---------------------~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~ 271 (318)
.+..| |..+.+|..+..+.........+ .-+++..+.|+.+ ..+..||.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~ve~Y--DP~td~W~~v~~m~~~r~~~~~~--~~~~~IYv~GG~~~~~~~~~~ve~Ydp 487 (557)
T PHA02713 412 DYTSVHHMNSIDMEEDTHSSNKVIRY--DTVNNIWETLPNFWTGTIRPGVV--SHKDDIYVVCDIKDEKNVKTCIFRYNT 487 (557)
T ss_pred ccccccccccccccccccccceEEEE--CCCCCeEeecCCCCcccccCcEE--EECCEEEEEeCCCCCCccceeEEEecC
Confidence 35666 77788887666553222221122 2246666677654 24678888
Q ss_pred cC-Cceeeee
Q 021036 272 HG-NSLSQVS 280 (318)
Q Consensus 272 ~~-~~~~~~~ 280 (318)
.+ +....+.
T Consensus 488 ~~~~~W~~~~ 497 (557)
T PHA02713 488 NTYNGWELIT 497 (557)
T ss_pred CCCCCeeEcc
Confidence 87 5665443
No 364
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.49 E-value=0.013 Score=33.58 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=29.6
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
...|.+++| +|..++|+.++.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w-------~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSW-------CPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEE-------CCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999 899999999999999999998 4443
No 365
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.49 E-value=0.19 Score=46.09 Aligned_cols=156 Identities=18% Similarity=0.137 Sum_probs=89.9
Q ss_pred CCCccEEEEecCCC------cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEe
Q 021036 81 SNWFSILAVGGRSG------KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGS 154 (318)
Q Consensus 81 s~~~~~l~~g~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~ 154 (318)
+..+.+++.|+.++ .+..+|..+++. .....+..... -.+++. .++...++|+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w------------~~~a~m~~~r~-~~~~~~--------~~~~lYv~GG 340 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEW------------SSLAPMPSPRC-RVGVAV--------LNGKLYVVGG 340 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcE------------eecCCCCcccc-cccEEE--------ECCEEEEEcc
Confidence 44467888888874 577788877642 22233332222 233443 3567889999
Q ss_pred CC------CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCc-----EEEe
Q 021036 155 SD------GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGS-----FDLW 223 (318)
Q Consensus 155 ~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~-----i~vw 223 (318)
.| .++..||...++-......... ... ..++. -+|.+.++|+.||. |..|
T Consensus 341 ~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~------------R~~-~~v~~------l~g~iYavGG~dg~~~l~svE~Y 401 (571)
T KOG4441|consen 341 YDSGSDRLSSVERYDPRTNQWTPVAPMNTK------------RSD-FGVAV------LDGKLYAVGGFDGEKSLNSVECY 401 (571)
T ss_pred ccCCCcccceEEEecCCCCceeccCCccCc------------ccc-ceeEE------ECCEEEEEeccccccccccEEEe
Confidence 88 3677888877663321111110 001 12222 47899999998876 6666
Q ss_pred eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC------CcEEEEEecCCceeeee
Q 021036 224 KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD------NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 224 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~ 280 (318)
|..+.+|..+..+.......-.+ .-+|...+.||.+ .++..||..++....+.
T Consensus 402 --Dp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 402 --DPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred --cCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 67777776665544322222222 2357777888755 45778888877665443
No 366
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.012 Score=55.49 Aligned_cols=75 Identities=21% Similarity=0.285 Sum_probs=57.7
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+..++.|+.-|.+...|....-+ +...-..-.++|++++| +.+|..++.|-.+|.|.+||
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~-------------~~~~ne~v~~~Vtsvaf-------n~dg~~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLG-------------PLHQNERVQGPVTSVAF-------NQDGSLLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccc-------------hhhcCCccCCcceeeEe-------cCCCceeccccCCCcEEEEE
Confidence 45788899999999888875311 11111223579999999 99999999999999999999
Q ss_pred CCCcceeeeeccccc
Q 021036 164 GYIQELQKSAEAHCV 178 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~ 178 (318)
+..++..+.+..+..
T Consensus 159 ~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 159 MHRAKILKVITEHGA 173 (1206)
T ss_pred ccCCcceeeeeecCC
Confidence 999988887766554
No 367
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.45 E-value=0.023 Score=48.95 Aligned_cols=106 Identities=14% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCceEEEEEe---------CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 206 PRLMLLAVGK---------GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~---------~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
||+++++... ..+.+.+| |+.+++..++.. ....+....|+|+|+.++... ++.|.+++..++..
T Consensus 2 ~d~~~~l~~~~~~~~~r~s~~~~y~i~--d~~~~~~~~l~~---~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 2 PDGKFVLFATNYTKQWRHSFKGDYYIY--DIETGEITPLTP---PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp TTSSEEEEEEEEEEESSSEEEEEEEEE--ETTTTEEEESS----EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCeEEEEECcEEeeeeccceeEEEE--ecCCCceEECcC---CccccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 6666666632 24456777 666765444333 256788899999999888775 67899999887766
Q ss_pred eeeecCCCCCCccccccCC---CcceeeeEEEEcCCCcEEEEEe
Q 021036 277 SQVSIPTNTPGLQSCTDLP---DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
.++.........-|..+.. +-.+.-..+-|||||++||..+
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~ 119 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLR 119 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEE
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEE
Confidence 6555444111111222100 0012336799999999999865
No 368
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.021 Score=54.00 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=70.0
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
.+-.++.|+..|.+...|+...-.. +... ..-.++|++++|+ .+|..++.|-.+|.|.+|
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~--~~~n-----------e~v~~~Vtsvafn-----~dg~~l~~G~~~G~V~v~-- 157 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP--LHQN-----------ERVQGPVTSVAFN-----QDGSLLLAGLGDGHVTVW-- 157 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch--hhcC-----------CccCCcceeeEec-----CCCceeccccCCCcEEEE--
Confidence 3446888998999999988754111 1100 1124589999999 899999999999999999
Q ss_pred ccCCCeeeEeeeeecccCceeE---EEEcCCCCEEEEecCCCcEEEEEe
Q 021036 226 DISCNKFDKVGSYNAHDQVVTG---LAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
|+..++ .++.+..|..+.++ +.+..++..++++...|. +|.+
T Consensus 158 D~~~~k--~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 158 DMHRAK--ILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EccCCc--ceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 454544 44555555555444 445556667888877776 5665
No 369
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.35 E-value=0.018 Score=44.75 Aligned_cols=107 Identities=20% Similarity=0.225 Sum_probs=63.1
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
.+..++.|+.+|.|.+|..........+... ....+-++.-. -.++.+..+++.+|.|+.|+
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s-------------~~e~i~~~Ip~----~~~~~~~c~~~~dg~ir~~n- 130 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCS-------------GEESIDLGIPN----GRDSSLGCVGAQDGRIRACN- 130 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhc-------------ccccceecccc----ccccceeEEeccCCceeeec-
Confidence 3457899999999999987622111110000 00122111111 03456889999999999994
Q ss_pred ccCCCeeeEeeeeeccc-CceeEEEEcCCCCEEEEe--cCCCcEEEEEecC
Q 021036 226 DISCNKFDKVGSYNAHD-QVVTGLAWAFDGCCLYSC--SQDNFVRSWIFHG 273 (318)
Q Consensus 226 ~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~--~~d~~v~iwd~~~ 273 (318)
..-.+ .+.....|+ .++..+..+..+++++.+ |.|..++.|++..
T Consensus 131 -~~p~k--~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 131 -IKPNK--VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred -cccCc--eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 43333 333444565 555555556666677777 7778888887753
No 370
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.31 E-value=0.45 Score=38.55 Aligned_cols=184 Identities=10% Similarity=-0.005 Sum_probs=91.1
Q ss_pred cEEEEecCCC--cEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSG--KVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.++-+.+.-| .|+.+|+.+++......-+...-++= +..+.+.+..+.| .++...+|
T Consensus 57 ~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEG---it~~~d~l~qLTW------------------k~~~~f~y 115 (264)
T PF05096_consen 57 TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEG---ITILGDKLYQLTW------------------KEGTGFVY 115 (264)
T ss_dssp EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEE---EEEETTEEEEEES------------------SSSEEEEE
T ss_pred EEEEeCCCCCcEEEEEEECCCCcEEEEEECCcccccee---EEEECCEEEEEEe------------------cCCeEEEE
Confidence 6777777666 68899999976432110000000000 1113445566666 56889999
Q ss_pred ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeec--
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNA-- 240 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~-- 240 (318)
|..+.+.+..+.... .=..++. +++.|+..+....++.+ |..+.+ ...++..
T Consensus 116 d~~tl~~~~~~~y~~---------------EGWGLt~-------dg~~Li~SDGS~~L~~~--dP~~f~--~~~~i~V~~ 169 (264)
T PF05096_consen 116 DPNTLKKIGTFPYPG---------------EGWGLTS-------DGKRLIMSDGSSRLYFL--DPETFK--EVRTIQVTD 169 (264)
T ss_dssp ETTTTEEEEEEE-SS---------------S--EEEE-------CSSCEEEE-SSSEEEEE---TTT-S--EEEEEE-EE
T ss_pred ccccceEEEEEecCC---------------cceEEEc-------CCCEEEEECCccceEEE--CCcccc--eEEEEEEEE
Confidence 999887777665432 2234443 46667777666677776 555433 2222221
Q ss_pred ccC---ceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCC-CCCccccccCCCcceeeeEEEEcC-CCcEEEE
Q 021036 241 HDQ---VVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTN-TPGLQSCTDLPDAFVSCLGMAVSP-GNLVVAM 315 (318)
Q Consensus 241 h~~---~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~~ 315 (318)
... .+..+.|- +|...|=.=....|...|..++.+....--.. .+......+...-....+++|+.| .+++++|
T Consensus 170 ~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT 248 (264)
T PF05096_consen 170 NGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT 248 (264)
T ss_dssp TTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred CCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence 222 33445553 45545544455566677777766643221000 000000000001134789999988 5567777
Q ss_pred E
Q 021036 316 V 316 (318)
Q Consensus 316 ~ 316 (318)
|
T Consensus 249 G 249 (264)
T PF05096_consen 249 G 249 (264)
T ss_dssp E
T ss_pred e
Confidence 6
No 371
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.17 E-value=0.5 Score=39.63 Aligned_cols=147 Identities=16% Similarity=0.077 Sum_probs=78.0
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
+.++.+--..+.|.-|+..+++. +.+.. .+.+.++.. -..+..|+++. ..+.+++
T Consensus 37 ~~L~w~DI~~~~i~r~~~~~g~~---------------~~~~~-p~~~~~~~~-------~d~~g~Lv~~~--~g~~~~~ 91 (307)
T COG3386 37 GALLWVDILGGRIHRLDPETGKK---------------RVFPS-PGGFSSGAL-------IDAGGRLIACE--HGVRLLD 91 (307)
T ss_pred CEEEEEeCCCCeEEEecCCcCce---------------EEEEC-CCCccccee-------ecCCCeEEEEc--cccEEEe
Confidence 35777777888899999876541 22222 233344444 33344555543 3456666
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---------CCcEEEeeeccCCCeeeE
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---------SGSFDLWKCDISCNKFDK 234 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---------dg~i~vw~~~~~~~~~~~ 234 (318)
..++.....+..... .......+.+.+. |+|.+.++... ...-.+|-++.....
T Consensus 92 ~~~~~~~t~~~~~~~---------~~~~~r~ND~~v~-----pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~--- 154 (307)
T COG3386 92 PDTGGKITLLAEPED---------GLPLNRPNDGVVD-----PDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGV--- 154 (307)
T ss_pred ccCCceeEEeccccC---------CCCcCCCCceeEc-----CCCCEEEeCCCccccCccccCCcceEEEEcCCCCE---
Confidence 655544222211110 0011244566777 77776665544 111245544543322
Q ss_pred eeeeecccCceeEEEEcCCCCEEEEec-CCCcEEEEEec
Q 021036 235 VGSYNAHDQVVTGLAWAFDGCCLYSCS-QDNFVRSWIFH 272 (318)
Q Consensus 235 ~~~~~~h~~~v~~~~~~~~~~~l~s~~-~d~~v~iwd~~ 272 (318)
+..+..+-..-+.++||||++.|..+. ..+.|.-|++.
T Consensus 155 ~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 155 VRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred EEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence 222333344457899999998666554 45788888775
No 372
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.14 E-value=0.64 Score=38.84 Aligned_cols=155 Identities=17% Similarity=0.116 Sum_probs=75.7
Q ss_pred ccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 73 YPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
..+..+..+++|++++++..-....-|+-.... .++.. +.-...|..|.| .+++.+.+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~------------w~~~~--r~~~~riq~~gf-------~~~~~lw~~ 203 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT------------WQPHN--RNSSRRIQSMGF-------SPDGNLWML 203 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------------EEEE----SSS-EEEEEE--------TTS-EEEE
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCcc------------ceEEc--cCccceehhcee-------cCCCCEEEE
Confidence 456777778889999888665555667754321 11111 223578999999 788766665
Q ss_pred EeCCCcEEEEEC-CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC-
Q 021036 153 GSSDGSVRIWDG-YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN- 230 (318)
Q Consensus 153 ~~~d~~v~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~- 230 (318)
+ ..|.|++=+. ...+.... ...+. ......+..+++. +++...++|+ .|.+.+ ....+
T Consensus 204 ~-~Gg~~~~s~~~~~~~~w~~---~~~~~-------~~~~~~~ld~a~~-----~~~~~wa~gg-~G~l~~---S~DgGk 263 (302)
T PF14870_consen 204 A-RGGQIQFSDDPDDGETWSE---PIIPI-------KTNGYGILDLAYR-----PPNEIWAVGG-SGTLLV---STDGGK 263 (302)
T ss_dssp E-TTTEEEEEE-TTEEEEE------B-TT-------SS--S-EEEEEES-----SSS-EEEEES-TT-EEE---ESSTTS
T ss_pred e-CCcEEEEccCCCCcccccc---ccCCc-------ccCceeeEEEEec-----CCCCEEEEeC-CccEEE---eCCCCc
Confidence 4 8888888772 22222111 00000 0122356788887 6777777665 665555 33333
Q ss_pred eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 231 KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 231 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
.++.......-....+.+.|.+..+-++ -+.+|.|.-|
T Consensus 264 tW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 264 TWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp S-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred cceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence 3433332223345678899976654444 4568877655
No 373
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.13 E-value=0.59 Score=38.22 Aligned_cols=125 Identities=12% Similarity=0.143 Sum_probs=86.7
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeecc
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPV 203 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 203 (318)
+.+-...|.++.| +++.+.|++......-.++=...|+.+.++..... +....+.+.
T Consensus 81 i~g~~~nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-------------~DpE~Ieyi--- 137 (316)
T COG3204 81 ILGETANVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-------------SDPETIEYI--- 137 (316)
T ss_pred cccccccccceee-------CCCcceEEEecCCCceEEEEecCCceEEEeccccc-------------CChhHeEEe---
Confidence 3455566999999 88888888888877777776677888877654321 123456676
Q ss_pred CCCCceEEEEEeCCCcEEEeeeccCCCeeeE------eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 204 QSPRLMLLAVGKGSGSFDLWKCDISCNKFDK------VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 204 ~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~------~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.+.++--.++.++++.++..+..... +......+.....++|+|..+.|..+-+-.-+.||.+..
T Consensus 138 --g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 138 --GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred --cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 66777777778888988877665433211 111111245678899999988888888888888887763
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.09 E-value=0.8 Score=42.26 Aligned_cols=163 Identities=15% Similarity=0.068 Sum_probs=83.9
Q ss_pred cccccCCCCCccEEEEec------CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 74 PVPQNGSSNWFSILAVGG------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
.+...+++++|+.++... .|..-.||-...+. .......+. ..+.-.| +++|
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-------------~~~~lt~g~--~~t~PsW-------spDG 408 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-------------VAVQVLEGH--SLTRPSW-------SLDA 408 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-------------cceeeecCC--CCCCceE-------CCCC
Confidence 466777888888876654 24444555443221 111112232 3677889 8888
Q ss_pred cEEEEEeCC-CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee-
Q 021036 148 VLLVTGSSD-GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC- 225 (318)
Q Consensus 148 ~~l~s~~~d-~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~- 225 (318)
+.|.+.... ..+++.+-.....+..+...... ........|..+.|+ |||..++... +|.|++=-+
T Consensus 409 ~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge------~~~~~~g~Issl~wS-----pDG~RiA~i~-~g~v~Va~Vv 476 (591)
T PRK13616 409 DAVWVVVDGNTVVRVIRDPATGQLARTPVDASA------VASRVPGPISELQLS-----RDGVRAAMII-GGKVYLAVVE 476 (591)
T ss_pred CceEEEecCcceEEEeccCCCceEEEEeccCch------hhhccCCCcCeEEEC-----CCCCEEEEEE-CCEEEEEEEE
Confidence 877777543 22333322211112111111100 000123479999999 9999888766 576666211
Q ss_pred ccCCCeeeE--eeeeec-ccCceeEEEEcCCCCEEEEecCCCcEEEEEe
Q 021036 226 DISCNKFDK--VGSYNA-HDQVVTGLAWAFDGCCLYSCSQDNFVRSWIF 271 (318)
Q Consensus 226 ~~~~~~~~~--~~~~~~-h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 271 (318)
....+.... ...+.. -...+..+.|..++.++ .+..++...+|.+
T Consensus 477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred eCCCCceeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 223333111 111222 23346789999999854 5555554445544
No 375
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.07 E-value=0.22 Score=45.65 Aligned_cols=112 Identities=9% Similarity=0.114 Sum_probs=69.1
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
++..++-+....+.|||...+. .+....+ ...+.|.++.| .+.++++.+++.+....|.++.
T Consensus 41 ~k~a~V~~~~~~LtIWD~~~~~------------lE~~~~f-~~~~~I~dLDW-----tst~d~qsiLaVGf~~~v~l~~ 102 (631)
T PF12234_consen 41 KKIAVVDSSRSELTIWDTRSGV------------LEYEESF-SEDDPIRDLDW-----TSTPDGQSILAVGFPHHVLLYT 102 (631)
T ss_pred CcEEEEECCCCEEEEEEcCCcE------------EEEeeee-cCCCceeecee-----eecCCCCEEEEEEcCcEEEEEE
Confidence 3554555555578999998754 2233334 44688999999 3467888899999999999996
Q ss_pred CCCcceeeeecccccccccceee--eeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEV--VTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
....... .....+..++.+ .....++|.+..|. ++|.+++.+ .+.+.+++
T Consensus 103 Q~R~dy~----~~~p~w~~i~~i~i~~~T~h~Igds~Wl-----~~G~LvV~s--GNqlfv~d 154 (631)
T PF12234_consen 103 QLRYDYT----NKGPSWAPIRKIDISSHTPHPIGDSIWL-----KDGTLVVGS--GNQLFVFD 154 (631)
T ss_pred ccchhhh----cCCcccceeEEEEeecCCCCCccceeEe-----cCCeEEEEe--CCEEEEEC
Confidence 5321111 111112222222 12233688999998 777666544 45677774
No 376
>PHA03098 kelch-like protein; Provisional
Probab=96.06 E-value=0.81 Score=41.93 Aligned_cols=70 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred CceEEEEEeCC------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC--------CcEEEEEec
Q 021036 207 RLMLLAVGKGS------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD--------NFVRSWIFH 272 (318)
Q Consensus 207 ~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d--------~~v~iwd~~ 272 (318)
++.+++.|+.+ ..+..| |..+.+|..+..+.........+ ..++..++.|+.+ ..+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~y--d~~t~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECF--SLNTNKWSKGSPLPISHYGGCAI--YHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEE--eCCCCeeeecCCCCccccCceEE--EECCEEEEECCccCCCCCcccceEEEecCC
Confidence 56777777732 346676 66777776554432211111122 2346666667643 238889988
Q ss_pred CCceeeee
Q 021036 273 GNSLSQVS 280 (318)
Q Consensus 273 ~~~~~~~~ 280 (318)
+++...+.
T Consensus 465 ~~~W~~~~ 472 (534)
T PHA03098 465 TNKWTELS 472 (534)
T ss_pred CCceeeCC
Confidence 77666543
No 377
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.92 E-value=0.52 Score=43.45 Aligned_cols=105 Identities=12% Similarity=-0.046 Sum_probs=57.3
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEe------CCC--cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGS------SDG--SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~------~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
..+...+. +++|+.++... .|. .|.+++.. +.. ..+.. ....+.-.|+
T Consensus 350 ~~vsspai-------SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~---------------g~~~t~PsWs 405 (591)
T PRK13616 350 GNITSAAL-------SRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE---------------GHSLTRPSWS 405 (591)
T ss_pred cCcccceE-------CCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec---------------CCCCCCceEC
Confidence 45677888 88888776655 243 44444542 221 11110 0124556777
Q ss_pred eccCCCCceEEEEEeCCCc-EEEe---------eeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEE
Q 021036 201 LPVQSPRLMLLAVGKGSGS-FDLW---------KCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRS 268 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~-i~vw---------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~i 268 (318)
|+|..+++...... +++. .++...+.... .....|..+.|||||..++... ++.|.+
T Consensus 406 -----pDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-----~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 406 -----LDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-----RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred -----CCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-----ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 88887777653312 2222 11222221100 2345799999999999877655 466666
No 378
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.92 E-value=0.79 Score=39.74 Aligned_cols=58 Identities=19% Similarity=0.197 Sum_probs=33.9
Q ss_pred CceeEEEEcCCCCEEEEecCC-------------------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeE
Q 021036 243 QVVTGLAWAFDGCCLYSCSQD-------------------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLG 303 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d-------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 303 (318)
.....++|.|||.+.++-+.. |.|.-++..++....+...- .....
T Consensus 124 ~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~---------------rnp~G 188 (367)
T TIGR02604 124 HSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGF---------------QNPYG 188 (367)
T ss_pred ccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecCc---------------CCCcc
Confidence 346789999999865544421 33444444444333222111 13468
Q ss_pred EEEcCCCcEEEE
Q 021036 304 MAVSPGNLVVAM 315 (318)
Q Consensus 304 v~~sp~~~~l~~ 315 (318)
++|+|+|+++++
T Consensus 189 l~~d~~G~l~~t 200 (367)
T TIGR02604 189 HSVDSWGDVFFC 200 (367)
T ss_pred ceECCCCCEEEE
Confidence 999999988765
No 379
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.92 E-value=0.23 Score=47.73 Aligned_cols=101 Identities=13% Similarity=0.045 Sum_probs=64.7
Q ss_pred eEEEEeeccCCCC-ceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 195 SVLSLILPVQSPR-LMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 195 ~~l~~~~~~~~~~-~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.|+ |. ....+....|+.|++..+..... .+..+ .-....++++|+|.|+.++.|-..|++.-|...-
T Consensus 159 ~~~~wn-----P~vp~n~av~l~dlsl~V~~~~~~~~---~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 159 LKNVWN-----PLVPLNSAVDLSDLSLRVKSTKQLAQ---NVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred cccccc-----CCccchhhhhccccchhhhhhhhhhh---hhccc-CcccceeeEEeccccceeeEecCCCeEEEeeccc
Confidence 355565 43 45567777899999974332221 22222 2445679999999999999999999998886544
Q ss_pred CceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 274 NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
.....+...+... ...|.+|.|-....++++
T Consensus 230 eik~~ip~Pp~~e-----------~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 230 EIKSEIPEPPVEE-----------NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ceeecccCCCcCC-----------CcceeEEEEecceeEEEE
Confidence 3223222222211 247889999877766654
No 380
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.88 E-value=0.04 Score=42.95 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=60.1
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..+++|+.+|.|.+|....-. .....+..-...|-++-- ...++.+..+++.||.++.|++
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g-------------~~~d~~~s~~e~i~~~Ip------~~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEG-------------AHSDRVCSGEESIDLGIP------NGRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ceEEeecccceEEEecCCccc-------------hHHHhhhcccccceeccc------cccccceeEEeccCCceeeecc
Confidence 678999999999999887311 111111122223333221 1334458899999999999998
Q ss_pred CCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEE--eCCCcEEEee
Q 021036 165 YIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVG--KGSGSFDLWK 224 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~--~~dg~i~vw~ 224 (318)
.-.+.+.....|.. .++..+..+ ..++.++.+ +.|..++.|+
T Consensus 132 ~p~k~~g~~g~h~~-------------~~~e~~ivv-----~sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 132 KPNKVLGYVGQHNF-------------ESGEELIVV-----GSDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred ccCceeeeeccccC-------------CCcceeEEe-----cCCceEEeeccccchhhhhcc
Confidence 87665554443331 133333443 455555555 6666666664
No 381
>PHA02790 Kelch-like protein; Provisional
Probab=95.82 E-value=0.64 Score=41.92 Aligned_cols=64 Identities=13% Similarity=0.018 Sum_probs=38.0
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCC-----CcEEEEEecCCce
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-----NFVRSWIFHGNSL 276 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-----~~v~iwd~~~~~~ 276 (318)
-++.+.+.|+ .+.+| |..+.+|..+..+.........+. -+++..+.||.+ ..+..||..+++.
T Consensus 406 ~~~~IYv~GG---~~e~y--dp~~~~W~~~~~m~~~r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 406 FGRRLFLVGR---NAEFY--CESSNTWTLIDDPIYPRDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ECCEEEEECC---ceEEe--cCCCCcEeEcCCCCCCccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 3567777774 56778 667788876665543222222222 356777777754 3566777666554
No 382
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.75 E-value=0.85 Score=36.95 Aligned_cols=126 Identities=8% Similarity=0.062 Sum_probs=75.7
Q ss_pred eeeccccccEEEEEeeeecCCCCCC-CcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNP-QVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
+.+.+-...+..|+| .++ +.++++....+.|..++.. |+.+..+.... ....-.|++.
T Consensus 15 ~~l~g~~~e~SGLTy-------~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-------------~~D~EgI~y~ 73 (248)
T PF06977_consen 15 KPLPGILDELSGLTY-------NPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-------------FGDYEGITYL 73 (248)
T ss_dssp EE-TT--S-EEEEEE-------ETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--------------SSEEEEEE-
T ss_pred eECCCccCCccccEE-------cCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-------------CCCceeEEEE
Confidence 345565667999999 665 5577777778899888874 67766654322 2245678887
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCee--eEeeeee-----cccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF--DKVGSYN-----AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~--~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.++.++++.-.++.+.+++++..+... .....+. .+...+..++|+|.+..|+.+-+..-..+|.++.
T Consensus 74 -----g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 74 -----GNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp -----STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred -----CCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 677777766678999998764433221 1112221 3456689999999888777777777778887764
No 383
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.70 E-value=1.3 Score=38.64 Aligned_cols=104 Identities=15% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE-EeCCCcEEEeeeccCCCeee
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV-GKGSGSFDLWKCDISCNKFD 233 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~-~~~dg~i~vw~~~~~~~~~~ 233 (318)
...++.+||+.+.+.++++...... ...-.+.|. .+ |+..+-++ +--..+|..|- ....+++.
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g------------~~pLEvRfl--H~-P~~~~gFvg~aLss~i~~~~-k~~~g~W~ 283 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEG------------QMPLEVRFL--HD-PDANYGFVGCALSSSIWRFY-KDDDGEWA 283 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTE------------EEEEEEEE---SS-TT--EEEEEEE--EEEEEEE-E-ETTEEE
T ss_pred ccCeEEEEECCCCcEeeEEecCCCC------------CceEEEEec--CC-CCccceEEEEeccceEEEEE-EcCCCCee
Confidence 3568999999999999988765320 012234443 22 33333333 33344455442 22344443
Q ss_pred E--eeeeecc-----------------cCceeEEEEcCCCCEEEE-ecCCCcEEEEEecCC
Q 021036 234 K--VGSYNAH-----------------DQVVTGLAWAFDGCCLYS-CSQDNFVRSWIFHGN 274 (318)
Q Consensus 234 ~--~~~~~~h-----------------~~~v~~~~~~~~~~~l~s-~~~d~~v~iwd~~~~ 274 (318)
. +..+... ..-|+.+..|.|.++|.. +=.+|.|+.||+...
T Consensus 284 a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 284 AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp EEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred eeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 2 2222111 245789999999998754 557899999999763
No 384
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.67 E-value=1.6 Score=39.52 Aligned_cols=164 Identities=18% Similarity=0.099 Sum_probs=82.0
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeecccccc--EEEEEeeeecCCCCCCCcEEEEEe--------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW--ITSISLAVLSSDSSNPQVLLVTGS-------- 154 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~l~s~~-------- 154 (318)
..++.++.+|.|.-+|.++++. +-.+...... -..+.-.|. -.+ ..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~--------------~W~~~~~~~~~~~~~i~ssP~----v~~-~~v~vg~~~~~~~~~ 171 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQ--------------VWKFGNNDQVPPGYTMTGAPT----IVK-KLVIIGSSGAEFFAC 171 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCE--------------eeeecCCCCcCcceEecCCCE----EEC-CEEEEeccccccccC
Confidence 5777888999999999998763 2222211110 000111000 012 3344443
Q ss_pred -CCCcEEEEECCCcceeeeecccccccccceee-----eeecc-cce-eEEEEeeccCCCCceEEEEEeCCC--------
Q 021036 155 -SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEV-----VTVNT-VPI-SVLSLILPVQSPRLMLLAVGKGSG-------- 218 (318)
Q Consensus 155 -~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~v-~~l~~~~~~~~~~~~~l~~~~~dg-------- 218 (318)
.++.+..+|..+|+.+..+............. ..... ..+ ...++. +.+..++.++.++
T Consensus 172 ~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d-----~~~g~V~vg~~~g~~~~~~~~ 246 (488)
T cd00216 172 GVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYD-----PKTNLVYVGTGNGSPWNWGGR 246 (488)
T ss_pred CCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEe-----CCCCEEEEECCCCCCCccCCc
Confidence 36889999999999888765421100000000 00000 011 123344 4566777776665
Q ss_pred ----------cEEEeeeccCCCeeeEeeeee--cccC----ceeEEEEc----CCCC---EEEEecCCCcEEEEEecCCc
Q 021036 219 ----------SFDLWKCDISCNKFDKVGSYN--AHDQ----VVTGLAWA----FDGC---CLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 219 ----------~i~vw~~~~~~~~~~~~~~~~--~h~~----~v~~~~~~----~~~~---~l~s~~~d~~v~iwd~~~~~ 275 (318)
.|.-+ |..+++ ....++ .|.. ......+. -+|. .++.++.+|.+...|.++++
T Consensus 247 ~~~~~~~~~~~l~Al--d~~tG~--~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 247 RTPGDNLYTDSIVAL--DADTGK--VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred cCCCCCCceeeEEEE--cCCCCC--EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 34444 777776 333332 1210 00000111 1333 57778889999999998876
Q ss_pred e
Q 021036 276 L 276 (318)
Q Consensus 276 ~ 276 (318)
.
T Consensus 323 ~ 323 (488)
T cd00216 323 L 323 (488)
T ss_pred E
Confidence 5
No 385
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.53 E-value=1.4 Score=37.95 Aligned_cols=92 Identities=17% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE-EEEcCCCCEE-EEecCC--C--cEEEEEec-CCceee
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG-LAWAFDGCCL-YSCSQD--N--FVRSWIFH-GNSLSQ 278 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~l-~s~~~d--~--~v~iwd~~-~~~~~~ 278 (318)
.+..++.....+|.-+||-++..++..+ .+....-.|.. +.|++++..| +++..+ + .|..-++. ++....
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~~~---~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~ 322 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGKPR---QLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKC 322 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSEEE---ESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEE
T ss_pred CCCEEEEEEEcCCCcEEEEEccccccee---ccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEe
Confidence 4456666677899988887777776532 34444556644 6788887644 455442 2 44444555 444444
Q ss_pred eecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 279 VSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
+..... .| ..++|||++++++.
T Consensus 323 LT~~~~-----------~~----~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 323 LTCEDG-----------DH----YSASFSPDGKYYVD 344 (353)
T ss_dssp SSTTSS-----------TT----EEEEE-TTSSEEEE
T ss_pred ccCCCC-----------Cc----eEEEECCCCCEEEE
Confidence 332221 11 69999999998764
No 386
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.44 E-value=1.2 Score=36.42 Aligned_cols=150 Identities=15% Similarity=0.060 Sum_probs=82.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEe-CC--CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGS-SD--GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~-~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
.+.+.++ +++++.++... .+ ..+.++... ........ ...+..-.|+ +
T Consensus 25 ~~~s~Av-------S~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~---------------g~~l~~PS~d-----~ 75 (253)
T PF10647_consen 25 DVTSPAV-------SPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLT---------------GGSLTRPSWD-----P 75 (253)
T ss_pred cccceEE-------CCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeecc---------------CCcccccccc-----C
Confidence 6788888 88887776655 23 344444433 22222110 1144555677 7
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeee-eecccCceeEEEEcCCCCEEEEec---CCCcEEEEEecC---Cceeee
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGS-YNAHDQVVTGLAWAFDGCCLYSCS---QDNFVRSWIFHG---NSLSQV 279 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~~l~s~~---~d~~v~iwd~~~---~~~~~~ 279 (318)
++...+....+...+++. +...+....+.. ...-...|+.+.+||||..++.-. .++.|.+=-+.. +....+
T Consensus 76 ~g~~W~v~~~~~~~~~~~-~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 76 DGWVWTVDDGSGGVRVVR-DSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CCCEEEEEcCCCceEEEE-ecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 887777777677777763 222222212211 111112899999999999776544 456777765532 201111
Q ss_pred ecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 280 SIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 280 ~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
. .+. .-.......+..++|.+++.+++.+.
T Consensus 155 ~-~~~-------~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 155 T-GPR-------RVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred c-cce-------EecccccCcceeeeecCCCEEEEEeC
Confidence 0 000 00112234789999999998877654
No 387
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.42 E-value=1.3 Score=36.99 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=72.4
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+.+..+.- .++|+++++++......-||--...-.... ......|..+.|. |+
T Consensus 144 ~gs~~~~~r-------~~dG~~vavs~~G~~~~s~~~G~~~w~~~~--------------r~~~~riq~~gf~-----~~ 197 (302)
T PF14870_consen 144 SGSINDITR-------SSDGRYVAVSSRGNFYSSWDPGQTTWQPHN--------------RNSSRRIQSMGFS-----PD 197 (302)
T ss_dssp ---EEEEEE--------TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------------SSS-EEEEEE------TT
T ss_pred cceeEeEEE-------CCCCcEEEEECcccEEEEecCCCccceEEc--------------cCccceehhceec-----CC
Confidence 456788877 889998888877666677775432111111 1123378999999 88
Q ss_pred ceEEEEEeCCCcEEEeeeccCCCeeeE-eeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecC-CCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCNKFDK-VGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIP-TNT 285 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~ 285 (318)
+.+.+.+ ..|.|+.=+.......+.. +.....-.-.+..++|.+++...++|+. |.+ +.....++--+.... ..
T Consensus 198 ~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~- 273 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGEN- 273 (302)
T ss_dssp S-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTT-
T ss_pred CCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCccceECccccC-
Confidence 8877765 7888777421011112211 1111112334788999999887776654 444 344444443322211 11
Q ss_pred CCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 286 PGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 286 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
-.+.++.|.|.++.+-++.|+
T Consensus 274 -----------~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 274 -----------VPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -----------SSS---EEEEEETTEEEEE-S
T ss_pred -----------CCCceEEEEEcCCCceEEECC
Confidence 113568888887777777664
No 388
>PHA02790 Kelch-like protein; Provisional
Probab=95.40 E-value=2 Score=38.82 Aligned_cols=68 Identities=9% Similarity=0.007 Sum_probs=40.0
Q ss_pred CCceEEEEEeCCC---cEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeee
Q 021036 206 PRLMLLAVGKGSG---SFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 206 ~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 280 (318)
-+|++.+.|+.++ .+..| |.++.+|..+..+.........+ .-+++..+.|+ .+.+||..++....+.
T Consensus 361 ~~g~IYviGG~~~~~~~ve~y--dp~~~~W~~~~~m~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 361 INNVIYVIGGHSETDTTTEYL--LPNHDQWQFGPSTYYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLID 431 (480)
T ss_pred ECCEEEEecCcCCCCccEEEE--eCCCCEEEeCCCCCCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcC
Confidence 3678888887654 36677 67777776654443222222222 23466566663 5778888877665543
No 389
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.33 E-value=1.3 Score=36.21 Aligned_cols=147 Identities=14% Similarity=0.081 Sum_probs=89.8
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCc-EEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGS-VRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM 209 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~ 209 (318)
-..+.++|. ...-++.+-.-|+ ..++|....+...++...+. .+-.-.-.|+ |||.
T Consensus 70 ~Hgi~~~p~------~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~------------RHfyGHGvfs-----~dG~ 126 (366)
T COG3490 70 GHGIAFHPA------LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEG------------RHFYGHGVFS-----PDGR 126 (366)
T ss_pred cCCeecCCC------CcceEEEEecCCceEEEECCCCCcCcEEEecccC------------ceeecccccC-----CCCc
Confidence 345667332 2233555555554 56888888776666544332 1112233577 9999
Q ss_pred EEEEEeC-----CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE---------------
Q 021036 210 LLAVGKG-----SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW--------------- 269 (318)
Q Consensus 210 ~l~~~~~-----dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw--------------- 269 (318)
+|+..-. -|.|=+|| .+ ..++.+.++..|.-....+.|.+||+.++.+. |-|..-
T Consensus 127 ~LYATEndfd~~rGViGvYd--~r-~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan--GGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 127 LLYATENDFDPNRGVIGVYD--AR-EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN--GGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred EEEeecCCCCCCCceEEEEe--cc-cccceecccccCCcCcceeEEecCCcEEEEeC--CceecccccCccccchhhcCc
Confidence 9887643 46789995 44 44557888888888888999999999887764 333332
Q ss_pred -----EecCCceeeeecCCCCCCccccccCC--CcceeeeEEEEcCCCcEEEEEe
Q 021036 270 -----IFHGNSLSQVSIPTNTPGLQSCTDLP--DAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 270 -----d~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
|..++.+.+ ...++ .+...+..++..+||+..+-++
T Consensus 202 Slvlld~atG~lie------------kh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 202 SLVLLDAATGNLIE------------KHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred cEEEEeccccchhh------------hccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 222222211 11222 3445788999999998877654
No 390
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.26 E-value=1.5 Score=36.78 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=52.8
Q ss_pred ceeEEEEeeccCCCCceEEEEEeC-CCcEEEeeeccCCCe---eeEeeeeecccCceeEEEEcCCCCEEEEecCCC-cEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKG-SGSFDLWKCDISCNK---FDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN-FVR 267 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~-dg~i~vw~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~-~v~ 267 (318)
.-+.|+|+ ||++.|+.+.. .+.|.-|+++..+.. ......+....+..-.++...+|.+.+++..+| .|.
T Consensus 164 ~~NGla~S-----pDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~ 238 (307)
T COG3386 164 IPNGLAFS-----PDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVV 238 (307)
T ss_pred ecCceEEC-----CCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEE
Confidence 45789999 99977777764 477888876632221 111122222345556678888888775555554 899
Q ss_pred EEEecCCceeeeecC
Q 021036 268 SWIFHGNSLSQVSIP 282 (318)
Q Consensus 268 iwd~~~~~~~~~~~~ 282 (318)
+|+........+...
T Consensus 239 ~~~pdG~l~~~i~lP 253 (307)
T COG3386 239 RFNPDGKLLGEIKLP 253 (307)
T ss_pred EECCCCcEEEEEECC
Confidence 999885444444443
No 391
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.18 E-value=1.3 Score=35.58 Aligned_cols=69 Identities=16% Similarity=0.074 Sum_probs=49.9
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
|++++.|...|.+++.+.++|+. ...+..- .-.+.. .. .+++.++..|+.|++....
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~--------------~w~f~~~~~vk~~a-~~-------d~~~glIycgshd~~~yal 120 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQ--------------IWNFVILETVKVRA-QC-------DFDGGLIYCGSHDGNFYAL 120 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhh--------------eeeeeehhhhccce-EE-------cCCCceEEEecCCCcEEEe
Confidence 47899999999999999999742 2222221 112222 22 5678899999999999999
Q ss_pred ECCCcceeeeec
Q 021036 163 DGYIQELQKSAE 174 (318)
Q Consensus 163 d~~~~~~~~~~~ 174 (318)
|.++..++...+
T Consensus 121 D~~~~~cVyksk 132 (354)
T KOG4649|consen 121 DPKTYGCVYKSK 132 (354)
T ss_pred cccccceEEecc
Confidence 999888776644
No 392
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.15 E-value=0.58 Score=36.95 Aligned_cols=94 Identities=9% Similarity=-0.045 Sum_probs=60.0
Q ss_pred ccCCCCC-ccEEEEecCCCcEEEEE--ccCCccccccccccCCceeEEeeecc---cc-ccEEEEEeeeecCCCCCCCcE
Q 021036 77 QNGSSNW-FSILAVGGRSGKVSLWR--ICVPKCYSVEDCKVPTTAVLIGLFQA---HN-SWITSISLAVLSSDSSNPQVL 149 (318)
Q Consensus 77 ~~~~s~~-~~~l~~g~~dg~i~iw~--~~~~~~~~~~~~~~~~~~~~~~~~~~---h~-~~v~~~~~~p~~~~~~~~~~~ 149 (318)
.++++.+ ..+.++-+.+-+|.-|| ..+|.... .+.+-.++. .. -.--.++. ..+|.+
T Consensus 162 gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~sn---------r~~i~dlrk~~~~e~~~PDGm~I-------D~eG~L 225 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN---------RKVIFDLRKSQPFESLEPDGMTI-------DTEGNL 225 (310)
T ss_pred cccccccCcEEEEEccCceEEeeeecCCCcccccC---------cceeEEeccCCCcCCCCCCcceE-------ccCCcE
Confidence 4455544 44556667788888888 44554321 111111111 11 11134555 568888
Q ss_pred EEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEe
Q 021036 150 LVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLI 200 (318)
Q Consensus 150 l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~ 200 (318)
.+++-..++|...|..+|+.+..+..... .+++++|-
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~--------------qitsccFg 262 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILLEIKLPTP--------------QITSCCFG 262 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEEEEEcCCC--------------ceEEEEec
Confidence 89888899999999999999988876554 78888886
No 393
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.10 E-value=1.3 Score=35.07 Aligned_cols=95 Identities=6% Similarity=-0.040 Sum_probs=59.7
Q ss_pred eEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccCCCeee---Eeeeeec---cc-CceeEEEEcCCCCEEEEecCCCcE
Q 021036 195 SVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDISCNKFD---KVGSYNA---HD-QVVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 195 ~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~~~~~~---~~~~~~~---h~-~~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
+.++|+ .+.+ +.++-+.+-.|.-||.|..++... .+..++. .+ ...-.++.+.+|.+.+++-..++|
T Consensus 161 Ngl~Wd-----~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V 235 (310)
T KOG4499|consen 161 NGLAWD-----SDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTV 235 (310)
T ss_pred cccccc-----ccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEE
Confidence 467777 5554 445566777888898777766431 2222322 11 112345666778888888788999
Q ss_pred EEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcC
Q 021036 267 RSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP 308 (318)
Q Consensus 267 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp 308 (318)
...|..++++......|. ..+++++|--
T Consensus 236 ~~~dp~tGK~L~eiklPt--------------~qitsccFgG 263 (310)
T KOG4499|consen 236 QKVDPTTGKILLEIKLPT--------------PQITSCCFGG 263 (310)
T ss_pred EEECCCCCcEEEEEEcCC--------------CceEEEEecC
Confidence 999999987654332221 2678888874
No 394
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.09 E-value=2 Score=38.79 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=72.5
Q ss_pred cccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC-----cceeeeecc-cccccccceeeeeecccceeEEEE
Q 021036 126 AHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI-----QELQKSAEA-HCVPFSLLKEVVTVNTVPISVLSL 199 (318)
Q Consensus 126 ~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~-----~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~~ 199 (318)
+.-..|..+.|.|..... .-.|++..-...|.+|-+.- ++.+..-.. -..++. .--..+.|
T Consensus 54 GqFEhV~GlsW~P~~~~~---~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~p----------vLpQGCVW 120 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTAD---TPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFP----------VLPQGCVW 120 (671)
T ss_pred eccceeeeeeecCcccCC---CCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcc----------cCCCcccc
Confidence 444679999997765322 22355555678999998762 121111000 000110 01245678
Q ss_pred eeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEe-cCCCcEEEEEecCCcee
Q 021036 200 ILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSC-SQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~~d~~v~iwd~~~~~~~ 277 (318)
+ |....|++=.....=.+++......+ ....+ ...+.|.|.+|..||+.|+.+ +..=.-+|||-....+.
T Consensus 121 H-----Pk~~iL~VLT~~dvSV~~sV~~d~sr--VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~ 191 (671)
T PF15390_consen 121 H-----PKKAILTVLTARDVSVLPSVHCDSSR--VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQKTLH 191 (671)
T ss_pred c-----CCCceEEEEecCceeEeeeeeeCCce--EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchhhhh
Confidence 8 77777766554444344433222222 22233 356789999999999977655 33445788886544443
No 395
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.03 E-value=1.1 Score=40.24 Aligned_cols=109 Identities=16% Similarity=0.085 Sum_probs=61.5
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-eEeeeeec-ccC----ceeEEEEcCCCCEEEEecCCCcE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-DKVGSYNA-HDQ----VVTGLAWAFDGCCLYSCSQDNFV 266 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-~~~~~~~~-h~~----~v~~~~~~~~~~~l~s~~~d~~v 266 (318)
-|..+.|.+........+||+- ....|.+|.+..+..+. +.+..... ... -.....|+|....|+.-.....-
T Consensus 58 hV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS 136 (671)
T PF15390_consen 58 HVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS 136 (671)
T ss_pred eeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence 6888999833221123455555 47789999775433221 11111111 111 12456799998877765555444
Q ss_pred EEEEecCCc-eeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 267 RSWIFHGNS-LSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 267 ~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
.+++++... ........ .+.|.+.+|.+||+.|+++
T Consensus 137 V~~sV~~d~srVkaDi~~--------------~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 137 VLPSVHCDSSRVKADIKT--------------SGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred EeeeeeeCCceEEEeccC--------------CceEEEEEecCcCCEEEEE
Confidence 566765432 22222222 2488999999999987764
No 396
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.01 E-value=1.9 Score=36.41 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=86.8
Q ss_pred cEEEEecCCCcEEEEEccC-CccccccccccCCceeEEeeeccccccEE-EEEeeeecCCCCCCCcEEEEEeCCCcEEEE
Q 021036 85 SILAVGGRSGKVSLWRICV-PKCYSVEDCKVPTTAVLIGLFQAHNSWIT-SISLAVLSSDSSNPQVLLVTGSSDGSVRIW 162 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~l~s~~~d~~v~iw 162 (318)
.-+.+-+.||++.-..+.. |+.. .+....|....+++. .-.+ ...+..++--+.+|.|+--
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~----------~~~t~~F~~~~dp~f~~~~~-------~~~~~~~~F~Sy~G~v~~~ 210 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEA----------QKSTKVFDPDDDPLFEHPAY-------SRDGGRLYFVSYEGNVYSA 210 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEE----------EEEEEESSTTTS-B-S--EE-------ETTTTEEEEEBTTSEEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEe----------EeeccccCCCCcccccccce-------ECCCCeEEEEecCCEEEEE
Confidence 4567778899999888874 3311 011111222222222 2222 2333345546788998888
Q ss_pred ECCCcceeeeecccccccccceee---eeecccceeEEEEeeccCCCCceEEEEEe-------CCCcEEEeeeccCCCee
Q 021036 163 DGYIQELQKSAEAHCVPFSLLKEV---VTVNTVPISVLSLILPVQSPRLMLLAVGK-------GSGSFDLWKCDISCNKF 232 (318)
Q Consensus 163 d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~~~~~~l~~~~-------~dg~i~vw~~~~~~~~~ 232 (318)
|+........ . ++.+.... ..--.+...-++++ ++.+.+++.-. .|+.-.||-+|..+++
T Consensus 211 dlsg~~~~~~-~----~~~~~t~~e~~~~WrPGG~Q~~A~~----~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k- 280 (342)
T PF06433_consen 211 DLSGDSAKFG-K----PWSLLTDAEKADGWRPGGWQLIAYH----AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK- 280 (342)
T ss_dssp EETTSSEEEE-E----EEESS-HHHHHTTEEE-SSS-EEEE----TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-
T ss_pred eccCCccccc-C----cccccCccccccCcCCcceeeeeec----cccCeEEEEecCCCCCCccCCceEEEEEECCCCe-
Confidence 8876542211 0 11110000 00011234456676 23344433322 4555678888999888
Q ss_pred eEeeeeecccCceeEEEEcCCCC-EEEE-ecCCCcEEEEEecCCceee
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGC-CLYS-CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~-~l~s-~~~d~~v~iwd~~~~~~~~ 278 (318)
.+.++.. ..++.+|..+.+.+ +|++ ...++.+.+||..+++...
T Consensus 281 -rv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 281 -RVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp -EEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred -EEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 5666653 23577899998765 5544 4568999999999987664
No 397
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.98 E-value=3.4 Score=39.17 Aligned_cols=139 Identities=19% Similarity=0.092 Sum_probs=72.2
Q ss_pred ceEEeeCCCceeEeecCCCCCCCceecchhcccc-ccccceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEE
Q 021036 19 PTVAASKSKGNSITKIPSNCCLPLITADQYASRS-AMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVS 97 (318)
Q Consensus 19 ~~~t~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~ 97 (318)
.-+....|+.+.+||-.... +..+......... ....+......|.. .-...|..+.+++.|.+|+..|..|.+.
T Consensus 34 rNLl~~~d~~L~vWd~~e~~-l~~~nlr~~~~~~~~~~~~~~q~L~~~~---~~~f~v~~i~~n~~g~~lal~G~~~v~V 109 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECC-LLTVNLRSLESDAEGPAKSSYQKLLPSN---PPLFEVHQISLNPTGSLLALVGPRGVVV 109 (717)
T ss_pred eeeEEEeCCEEEEEECCCCE-EEEEeeccccccccCccccCcceeecCC---CCceeEEEEEECCCCCEEEEEcCCcEEE
Confidence 44666668999999876533 2222222111000 00000000111111 1125788888899999999988877444
Q ss_pred EEEccC-CccccccccccCCceeEEeee--------ccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcc
Q 021036 98 LWRICV-PKCYSVEDCKVPTTAVLIGLF--------QAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQE 168 (318)
Q Consensus 98 iw~~~~-~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 168 (318)
+.=.+. |..-....++. ...-+++ ..+...|..+.|+|. +.++..|+.-..|+++++||+...+
T Consensus 110 ~~LP~r~g~~~~~~~g~~---~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~----s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 110 LELPRRWGKNGEFEDGKK---EINCRTVPVDERFFTSNSSLEIKQVRWHPW----SESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEeccccCccccccCCCc---ceeEEEEEechhhccCCCCceEEEEEEcCC----CCCCCeEEEEecCCEEEEEecCCCC
Confidence 332211 10000000000 0011111 134568999999776 3345678888899999999997543
No 398
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=0.14 Score=49.06 Aligned_cols=155 Identities=12% Similarity=-0.029 Sum_probs=85.6
Q ss_pred cccccCCCCCccEEEE--ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEE
Q 021036 74 PVPQNGSSNWFSILAV--GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLV 151 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~ 151 (318)
++..+.+.+++...++ .+.+-.|..||+++-.....+...+ ...-+..........++.|+|.-+. ..+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p---l~~s~ts~ek~vf~~~~~wnP~vp~------n~a 172 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP---LKNSATSFEKPVFQLKNVWNPLVPL------NSA 172 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccc---cccccchhccccccccccccCCccc------hhh
Confidence 4455555555454433 3344467889987532111000000 0000111122344568888554332 367
Q ss_pred EEeCCCcEEEEECCCcce-eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCC
Q 021036 152 TGSSDGSVRIWDGYIQEL-QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCN 230 (318)
Q Consensus 152 s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~ 230 (318)
.+..|+.|++..+..... ...+.. ....++++|+ |.|+.+++|-.+|++.-|...+.-.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s~p~---------------t~~~Tav~WS-----prGKQl~iG~nnGt~vQy~P~leik 232 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTSFPV---------------TNSQTAVLWS-----PRGKQLFIGRNNGTEVQYEPSLEIK 232 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcccCc---------------ccceeeEEec-----cccceeeEecCCCeEEEeeccccee
Confidence 777889888877653221 111111 2267899999 9999999999999999994322211
Q ss_pred eeeEeeeeec-ccCceeEEEEcCCCCEEEE
Q 021036 231 KFDKVGSYNA-HDQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 231 ~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s 259 (318)
. .+..... ....|.+|.|-....++++
T Consensus 233 ~--~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 233 S--EIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred e--cccCCCcCCCcceeEEEEecceeEEEE
Confidence 1 1111111 1467899999877666654
No 399
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.82 E-value=1.8 Score=35.34 Aligned_cols=164 Identities=12% Similarity=0.055 Sum_probs=91.5
Q ss_pred CCCCCccEEEEec-----CCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 79 GSSNWFSILAVGG-----RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 79 ~~s~~~~~l~~g~-----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
.||++|.+|+..- .-|.|-|||...+ .+.+.++..|.-.-..+.| .++|+.++.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~-------------fqrvgE~~t~GiGpHev~l-------m~DGrtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREG-------------FQRVGEFSTHGIGPHEVTL-------MADGRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccc-------------cceecccccCCcCcceeEE-------ecCCcEEEEe
Confidence 4778889988753 3467899999853 4567778888877889999 8999988876
Q ss_pred eCCCcEEEE--------------------ECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEE
Q 021036 154 SSDGSVRIW--------------------DGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAV 213 (318)
Q Consensus 154 ~~d~~v~iw--------------------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~ 213 (318)
. |-|..- |..+|..+.+..... ..+...+..+... ++|...+-
T Consensus 180 n--GGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~----------~l~~lSiRHld~g-----~dgtvwfg 242 (366)
T COG3490 180 N--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA----------SLRQLSIRHLDIG-----RDGTVWFG 242 (366)
T ss_pred C--CceecccccCccccchhhcCccEEEEeccccchhhhccCch----------hhhhcceeeeeeC-----CCCcEEEE
Confidence 4 333332 322332222111100 1223356777776 66665554
Q ss_pred EeCCCc-------EEEeeeccCCCeeeEeee----eecccCceeEEEEcCCCCE-EEEecCCCcEEEEEecCCceeeeec
Q 021036 214 GKGSGS-------FDLWKCDISCNKFDKVGS----YNAHDQVVTGLAWAFDGCC-LYSCSQDNFVRSWIFHGNSLSQVSI 281 (318)
Q Consensus 214 ~~~dg~-------i~vw~~~~~~~~~~~~~~----~~~h~~~v~~~~~~~~~~~-l~s~~~d~~v~iwd~~~~~~~~~~~ 281 (318)
+-..|. |-.+ ...+..+.+.. .......|-+++.+.+..+ .+|+-..+...+||..++.+.....
T Consensus 243 cQy~G~~~d~ppLvg~~---~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 243 CQYRGPRNDLPPLVGHF---RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred EEeeCCCccCCcceeec---cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 432221 1111 11111111110 0112345567777765444 4555556678999999988765443
Q ss_pred C
Q 021036 282 P 282 (318)
Q Consensus 282 ~ 282 (318)
.
T Consensus 320 l 320 (366)
T COG3490 320 L 320 (366)
T ss_pred c
Confidence 3
No 400
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.53 E-value=1.2 Score=41.17 Aligned_cols=105 Identities=11% Similarity=0.144 Sum_probs=63.3
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEc--CCCCEEEEecCCCcEEEEEecCCceeeeecCC
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWA--FDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPT 283 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 283 (318)
.-++..++-+....+.|| |.+.+..+.-..+ ...+.|.+++|. |+|+.+++.+....|.+|.-...... ...|
T Consensus 39 s~~k~a~V~~~~~~LtIW--D~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~--~~~p 113 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIW--DTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT--NKGP 113 (631)
T ss_pred ccCcEEEEECCCCEEEEE--EcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh--cCCc
Confidence 344555555556678999 6666665444444 356789999986 57889999999999999964220000 0001
Q ss_pred CCCCccccccCCCcc-eeeeEEEEcCCCcEEEEE
Q 021036 284 NTPGLQSCTDLPDAF-VSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~h~-~~v~~v~~sp~~~~l~~~ 316 (318)
....+ ...++..|+ .+|.+..|-++|..++..
T Consensus 114 ~w~~i-~~i~i~~~T~h~Igds~Wl~~G~LvV~s 146 (631)
T PF12234_consen 114 SWAPI-RKIDISSHTPHPIGDSIWLKDGTLVVGS 146 (631)
T ss_pred cccee-EEEEeecCCCCCccceeEecCCeEEEEe
Confidence 00000 112222333 478899999999877643
No 401
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.47 E-value=3.2 Score=36.60 Aligned_cols=115 Identities=13% Similarity=0.029 Sum_probs=64.0
Q ss_pred EEEEEeeeecCCCCCCCcEEEEE-eCCC----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTG-SSDG----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~-~~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
+....+ ++++++++-+ +..| .++++|+.+++.+...-.. .....+.|.
T Consensus 126 ~~~~~~-------Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~---------------~~~~~~~W~----- 178 (414)
T PF02897_consen 126 LGGFSV-------SPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN---------------PKFSSVSWS----- 178 (414)
T ss_dssp EEEEEE-------TTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE---------------EESEEEEEC-----
T ss_pred eeeeeE-------CCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc---------------cccceEEEe-----
Confidence 335667 8899888765 3334 5999999998655421110 012238888
Q ss_pred CCceEEEEEeCCC---------c--EEEeeeccCCCee--eEeeeeecccCceeEEEEcCCCCEEEEec---CC-CcEEE
Q 021036 206 PRLMLLAVGKGSG---------S--FDLWKCDISCNKF--DKVGSYNAHDQVVTGLAWAFDGCCLYSCS---QD-NFVRS 268 (318)
Q Consensus 206 ~~~~~l~~~~~dg---------~--i~vw~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~d-~~v~i 268 (318)
++++.|+....+. . |+.| .+.+..- ..+............+..++++++++..+ .+ ..+.+
T Consensus 179 ~d~~~~~y~~~~~~~~~~~~~~~~~v~~~--~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 179 DDGKGFFYTRFDEDQRTSDSGYPRQVYRH--KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TTSSEEEEEECSTTTSS-CCGCCEEEEEE--ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred CCCCEEEEEEeCcccccccCCCCcEEEEE--ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 8877665554332 2 5555 4433322 23332222222256788899999766432 22 45777
Q ss_pred EEecCC
Q 021036 269 WIFHGN 274 (318)
Q Consensus 269 wd~~~~ 274 (318)
.++..+
T Consensus 257 ~d~~~~ 262 (414)
T PF02897_consen 257 LDLDDG 262 (414)
T ss_dssp EECCCT
T ss_pred Eecccc
Confidence 777664
No 402
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=94.47 E-value=2.3 Score=34.98 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..++.|+.|+.+| +.+++.........+. +..+|..+... ++-+.+++-+ |+.+++++
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~---------------~~~~I~ql~vl-----~~~~~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL---------------KLSSITQLSVL-----PELNLLLVLS-DGQLYVYD 62 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEe---------------ecceEEEEEEe-----cccCEEEEEc-CCccEEEE
Confidence 4567899999888 8999983222221111 12248888887 6666665555 59999997
Q ss_pred eccCCCeee--Eee--------eeecccCceeEEE--EcCCCCEEEEecCCCcEEEEEecC
Q 021036 225 CDISCNKFD--KVG--------SYNAHDQVVTGLA--WAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 225 ~~~~~~~~~--~~~--------~~~~h~~~v~~~~--~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
++.-..... ... ........+...+ -...+...++......|.+|....
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~ 123 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND 123 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence 543221110 000 0011122333333 112344444455556899998865
No 403
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.20 E-value=3.6 Score=36.15 Aligned_cols=166 Identities=10% Similarity=0.052 Sum_probs=88.5
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
...|++|+.+|.++||+...++... ...+ .-..-..+|-.+..-+|.+. .+...|+. -.-..+.+|.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~---------~~ll-lE~~l~~PILqv~~G~F~s~--~~~~~LaV-LhP~kl~vY~ 103 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQP---------EDLL-LETQLKDPILQVECGKFVSG--SEDLQLAV-LHPRKLSVYS 103 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCC---------ccEE-EEEecCCcEEEEEeccccCC--CCcceEEE-ecCCEEEEEE
Confidence 4789999999999999996543210 1111 11233579999998776432 23334444 4557888888
Q ss_pred CCCcceeeeecccccccccceeeeeecc--cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNT--VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h 241 (318)
+....... .+...+.+ .....|. .....+++-.=.......++.+-+.||.+.+| +-+... ....+..
T Consensus 104 v~~~~g~~---~~g~~~~L--~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~f--eqe~~~--f~~~lp~- 173 (418)
T PF14727_consen 104 VSLVDGTV---EHGNQYQL--ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFF--EQESFA--FSRFLPD- 173 (418)
T ss_pred EEecCCCc---ccCcEEEE--EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEE--eCCcEE--EEEEcCC-
Confidence 73211000 00000000 0001111 11222222211111224788999999999999 333322 1222222
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
---.-.+.|.+.-..|++++.+..+.-|...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 1112346788887889999988888888753
No 404
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.02 E-value=0.29 Score=45.94 Aligned_cols=160 Identities=13% Similarity=0.099 Sum_probs=84.7
Q ss_pred CCCcEEEEEccC--CccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 92 RSGKVSLWRICV--PKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 92 ~dg~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
.-|.+.+|++.- |+... .-.+.........+.-+.|+|+-. +.-++..+-.++++++....+...
T Consensus 151 ~vg~lfVy~vd~l~G~iq~---------~l~v~~~~p~gs~~~~V~wcp~~~----~~~~ic~~~~~~~i~lL~~~ra~~ 217 (1283)
T KOG1916|consen 151 LVGELFVYDVDVLQGEIQP---------QLEVTPITPYGSDPQLVSWCPIAV----NKVYICYGLKGGEIRLLNINRALR 217 (1283)
T ss_pred HhhhhheeehHhhcccccc---------ceEEeecCcCCCCcceeeeccccc----ccceeeeccCCCceeEeeechHHH
Confidence 346788888863 33211 112233334455678888988853 335777777888888877654322
Q ss_pred eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe-eeEeeeeeccc-CceeE
Q 021036 170 QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FDKVGSYNAHD-QVVTG 247 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~h~-~~v~~ 247 (318)
..+..|.....-...+ ..+-+.--.++ |||..|+.++.||.++.|.+-+.... .+++...+.|+ .+-.|
T Consensus 218 -~l~rsHs~~~~d~a~~---~~g~~~l~~lS-----pDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC 288 (1283)
T KOG1916|consen 218 -SLFRSHSQRVTDMAFF---AEGVLKLASLS-----PDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVC 288 (1283)
T ss_pred -HHHHhcCCCcccHHHH---hhchhhheeeC-----CCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCcee
Confidence 2222232110000000 00011111256 99999999999999999975443321 22455566666 33323
Q ss_pred EEEcCC-------CC--EEEEe-cCCCcEEEEEecC
Q 021036 248 LAWAFD-------GC--CLYSC-SQDNFVRSWIFHG 273 (318)
Q Consensus 248 ~~~~~~-------~~--~l~s~-~~d~~v~iwd~~~ 273 (318)
.-|+.+ +. +++++ ..+..+++|....
T Consensus 289 ~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 289 WLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred eeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 323322 11 33343 3456688887654
No 405
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.97 E-value=3.8 Score=35.56 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=36.6
Q ss_pred cceeEEEEeeccCCCCceEEEEEeCC-------------------CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGKGS-------------------GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF 252 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~~d-------------------g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 252 (318)
+....+.+. |+|.+.++-+.. | .+|.++..+.+.+.+. .++ .....++|+|
T Consensus 124 ~~~~~l~~g-----pDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g--~i~r~~pdg~~~e~~a--~G~-rnp~Gl~~d~ 193 (367)
T TIGR02604 124 HSLNSLAWG-----PDGWLYFNHGNTLASKVTRPGTSDESRQGLGG--GLFRYNPDGGKLRVVA--HGF-QNPYGHSVDS 193 (367)
T ss_pred ccccCceEC-----CCCCEEEecccCCCceeccCCCccCcccccCc--eEEEEecCCCeEEEEe--cCc-CCCccceECC
Confidence 356788888 888776654421 2 2443355555533221 233 3346899999
Q ss_pred CCCEEEEecCC
Q 021036 253 DGCCLYSCSQD 263 (318)
Q Consensus 253 ~~~~l~s~~~d 263 (318)
+|.++++-..+
T Consensus 194 ~G~l~~tdn~~ 204 (367)
T TIGR02604 194 WGDVFFCDNDD 204 (367)
T ss_pred CCCEEEEccCC
Confidence 99887765433
No 406
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=93.92 E-value=5 Score=36.73 Aligned_cols=164 Identities=16% Similarity=0.072 Sum_probs=85.4
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeec--ccc--ccEEEEEeeeecCCCCCCCcEEEEEe------
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQ--AHN--SWITSISLAVLSSDSSNPQVLLVTGS------ 154 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~--~~v~~~~~~p~~~~~~~~~~~l~s~~------ 154 (318)
..++.++.|+.+.-.|.++|+.+ -... .+. ..+.+ .|. -.++ .++.+.
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~--------------W~~~~~~~~~~~~~ts---sP~----v~~g-~Vivg~~~~~~~ 178 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVV--------------WSKKNGDYKAGYTITA---APL----VVKG-KVITGISGGEFG 178 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEE--------------eecccccccccccccC---CcE----EECC-EEEEeecccccC
Confidence 56777888999999999987632 1111 111 01111 010 1133 344443
Q ss_pred CCCcEEEEECCCcceeeeeccccccccc--------ce---------eeeeecccce-eEEEEeeccCCCCceEEEEEeC
Q 021036 155 SDGSVRIWDGYIQELQKSAEAHCVPFSL--------LK---------EVVTVNTVPI-SVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 155 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~--------~~---------~~~~~~~~~v-~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
.+|.|.-+|.++|+.+..+..-...... .. .........+ ..++++ +...+++.+..
T Consensus 179 ~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D-----~~~~lvy~~tG 253 (527)
T TIGR03075 179 VRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYD-----PETNLIYFGTG 253 (527)
T ss_pred CCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEc-----CCCCeEEEeCC
Confidence 2689999999999988775432211000 00 0000011111 234555 55555655552
Q ss_pred C-----Cc---------EEEeeeccCCCeeeEeeeeec--cc-------CceeEEEEcCCCC---EEEEecCCCcEEEEE
Q 021036 217 S-----GS---------FDLWKCDISCNKFDKVGSYNA--HD-------QVVTGLAWAFDGC---CLYSCSQDNFVRSWI 270 (318)
Q Consensus 217 d-----g~---------i~vw~~~~~~~~~~~~~~~~~--h~-------~~v~~~~~~~~~~---~l~s~~~d~~v~iwd 270 (318)
+ +. -.+.-+|.++++. ...++. |. ....-+....+|+ .++.+..+|.+++.|
T Consensus 254 np~p~~~~~r~gdnl~~~s~vAld~~TG~~--~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlD 331 (527)
T TIGR03075 254 NPSPWNSHLRPGDNLYTSSIVARDPDTGKI--KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLD 331 (527)
T ss_pred CCCCCCCCCCCCCCccceeEEEEccccCCE--EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEE
Confidence 2 21 1233347778873 333332 32 1111123334665 778999999999999
Q ss_pred ecCCcee
Q 021036 271 FHGNSLS 277 (318)
Q Consensus 271 ~~~~~~~ 277 (318)
..+++..
T Consensus 332 r~tG~~i 338 (527)
T TIGR03075 332 RTNGKLL 338 (527)
T ss_pred CCCCcee
Confidence 9988764
No 407
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.89 E-value=0.27 Score=27.41 Aligned_cols=31 Identities=10% Similarity=-0.118 Sum_probs=25.5
Q ss_pred CceeEEEEcCCC---CEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDG---CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~~~ 273 (318)
+.|.++.|+|.. .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999853 4888887789999999985
No 408
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=93.88 E-value=4.9 Score=36.44 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.4
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeec
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAE 174 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~ 174 (318)
.++.++.+|.+...|.++|+.+....
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeE
Confidence 67888899999999999999887654
No 409
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.87 E-value=3.6 Score=34.91 Aligned_cols=56 Identities=14% Similarity=0.060 Sum_probs=30.0
Q ss_pred CCceEEEEEeCCCc----EEEeeeccCCCeeeEeeeeecccCce---eEE-EEcCCCCEEEEecCC
Q 021036 206 PRLMLLAVGKGSGS----FDLWKCDISCNKFDKVGSYNAHDQVV---TGL-AWAFDGCCLYSCSQD 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg~----i~vw~~~~~~~~~~~~~~~~~h~~~v---~~~-~~~~~~~~l~s~~~d 263 (318)
.++++++.|+.++. +..| |..+.+|..+..+.....+. ... ....++++++.|+.+
T Consensus 170 ~~~~iYv~GG~~~~~~~~~~~y--d~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 170 LQNELYVFGGGSNIAYTDGYKY--SPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred ECCEEEEEcCCCCccccceEEE--ecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence 45778888876543 3455 77777776654432101111 111 112356777888766
No 410
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.87 E-value=5.8 Score=37.26 Aligned_cols=122 Identities=13% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcc-eeeee----cccc--cccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCC
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQE-LQKSA----EAHC--VPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGS 217 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~-~~~~~----~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~d 217 (318)
.+.+.|+.|..||.|.+|.+..-- .+... .... ....+ .+..--...+..+++.- -...+++|+++..
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P--~f~~~v~~SaWGLdIh~---~~~~rlIAVSsNs 186 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKP--FFHLRVGASAWGLDIHD---YKKSRLIAVSSNS 186 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCC--CeEeecCCceeEEEEEe---cCcceEEEEecCC
Confidence 345789999999999999874310 00000 0000 00000 11111233566777640 0346789999999
Q ss_pred CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCC-----CC-EEEEecCCCcEEEEEec
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFD-----GC-CLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-----~~-~l~s~~~d~~v~iwd~~ 272 (318)
..|.||-+.....+...... ..|...|.+|+|-++ |. ++++++-.|.+.+|++.
T Consensus 187 ~~VTVFaf~l~~~r~~~~~s-~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHVPS-HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred ceEEEEEEeccccccccccc-cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 99999976654333211111 125667889999764 32 78888999999999883
No 411
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.73 E-value=6.9 Score=37.71 Aligned_cols=104 Identities=12% Similarity=0.066 Sum_probs=64.8
Q ss_pred CcEEEEEe----------CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 147 QVLLVTGS----------SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 147 ~~~l~s~~----------~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
+.++++|. ..|.|.++.+..++.+.....+. -.+.+.++.. -+|+++|. -
T Consensus 787 ~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~------------v~Gav~aL~~------fngkllA~--I 846 (1096)
T KOG1897|consen 787 NTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETV------------VKGAVYALVE------FNGKLLAG--I 846 (1096)
T ss_pred ceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeee------------eccceeehhh------hCCeEEEe--c
Confidence 66777774 34667777666533332221111 1234555544 35776654 4
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCC
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGN 274 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 274 (318)
+..|++|+|. ..+ .++.-..+..++..+...-.|..++.|..-+.+.+...+..
T Consensus 847 n~~vrLye~t--~~~--eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~ 900 (1096)
T KOG1897|consen 847 NQSVRLYEWT--TER--ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGD 900 (1096)
T ss_pred CcEEEEEEcc--ccc--eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEecc
Confidence 6689999653 332 34444567788888988889999999998888877766553
No 412
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=93.17 E-value=4 Score=33.26 Aligned_cols=68 Identities=9% Similarity=0.027 Sum_probs=42.5
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
++..-.-.++...+||.++ .+.+.++.- ...=+.++. +++.|+.+.....+.++|.
T Consensus 101 ~l~qLTWk~~~~f~yd~~t--------------l~~~~~~~y-~~EGWGLt~---------dg~~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNT--------------LKKIGTFPY-PGEGWGLTS---------DGKRLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEEEESSSSEEEEEETTT--------------TEEEEEEE--SSS--EEEE---------CSSCEEEE-SSSEEEEE-T
T ss_pred EEEEEEecCCeEEEEcccc--------------ceEEEEEec-CCcceEEEc---------CCCEEEEECCccceEEECC
Confidence 3455556889999999987 445555532 334577776 4556777777789999999
Q ss_pred CCcceeeeeccc
Q 021036 165 YIQELQKSAEAH 176 (318)
Q Consensus 165 ~~~~~~~~~~~~ 176 (318)
.+.+....+...
T Consensus 157 ~~f~~~~~i~V~ 168 (264)
T PF05096_consen 157 ETFKEVRTIQVT 168 (264)
T ss_dssp TT-SEEEEEE-E
T ss_pred cccceEEEEEEE
Confidence 887777665543
No 413
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=93.07 E-value=5.2 Score=34.31 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=38.4
Q ss_pred CCceEEEEEeCCC------cEEEeeeccCCCeeeEeeeeecc-----cCceeEEEEcCCCCEEEEecCC-----------
Q 021036 206 PRLMLLAVGKGSG------SFDLWKCDISCNKFDKVGSYNAH-----DQVVTGLAWAFDGCCLYSCSQD----------- 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg------~i~vw~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~l~s~~~d----------- 263 (318)
-++++++.|+.+. .+.+|+++....+|..+..+... .......+...++++++.|+.+
T Consensus 199 ~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~ 278 (346)
T TIGR03547 199 KGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNG 278 (346)
T ss_pred ECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcC
Confidence 3567777776431 24556555555566555544211 1101111222457777777753
Q ss_pred -----------CcEEEEEecCCceeee
Q 021036 264 -----------NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 264 -----------~~v~iwd~~~~~~~~~ 279 (318)
..+.+||..+.+...+
T Consensus 279 ~~~~~~~~~~~~~~e~yd~~~~~W~~~ 305 (346)
T TIGR03547 279 KLYAHEGLIKAWSSEVYALDNGKWSKV 305 (346)
T ss_pred CccccCCCCceeEeeEEEecCCccccc
Confidence 1467888776655443
No 414
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.00 E-value=3.6 Score=32.27 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=60.1
Q ss_pred cEEEEEeCCCcEEEEECCCcc--eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC---CC---c
Q 021036 148 VLLVTGSSDGSVRIWDGYIQE--LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG---SG---S 219 (318)
Q Consensus 148 ~~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~---dg---~ 219 (318)
+.|+.+...+.|.+|++.... ....+..- +.|..+.++ ..|+++++--. .. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---------------~~V~~l~y~-----~~GDYlvTlE~k~~~~~~~f 88 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---------------GRVLQLVYS-----EAGDYLVTLEEKNKRSPVDF 88 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---------------hheeEEEec-----cccceEEEEEeecCCccceE
Confidence 445454667889999998332 23333321 367888888 88999988532 22 5
Q ss_pred EEEe-eeccCCCeeeEee-eeecc---------------------cCceeEEEEcCC-CCEEEEecCCCcEEEEEecCCc
Q 021036 220 FDLW-KCDISCNKFDKVG-SYNAH---------------------DQVVTGLAWAFD-GCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 220 i~vw-~~~~~~~~~~~~~-~~~~h---------------------~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
+|+| +|+.....-.++. ++.|| ..++.+++..|- |+. +.|+ ++.+.+|.+....
T Consensus 89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~L-lVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 89 VRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNL-LVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCE-EEEc-CCEEEEEEEEEEE
Confidence 6776 3433211111111 12221 335567777774 554 4443 5688899886543
Q ss_pred e
Q 021036 276 L 276 (318)
Q Consensus 276 ~ 276 (318)
.
T Consensus 167 ~ 167 (215)
T PF14761_consen 167 I 167 (215)
T ss_pred E
Confidence 3
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.39 E-value=7.3 Score=34.32 Aligned_cols=164 Identities=16% Similarity=0.116 Sum_probs=81.5
Q ss_pred CCccceEEeeCCCceeEeecCCCCCCCc--eecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEEecC
Q 021036 15 SNTHPTVAASKSKGNSITKIPSNCCLPL--ITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGR 92 (318)
Q Consensus 15 ~~~~~~~t~s~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~ 92 (318)
.+...++.||.+|.+||++-..+..... +-..+ -+..++.+.+=.|.+.. +...||+ -.
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~--l~~PILqv~~G~F~s~~----------------~~~~LaV-Lh 95 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQ--LKDPILQVECGKFVSGS----------------EDLQLAV-LH 95 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCCccEEEEEe--cCCcEEEEEeccccCCC----------------CcceEEE-ec
Confidence 3456789999999999998755432211 11111 11121111111111110 1134444 44
Q ss_pred CCcEEEEEccCCccccccccccCCceeEEeeeccc--cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCccee
Q 021036 93 SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH--NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQ 170 (318)
Q Consensus 93 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 170 (318)
-..+.+|.+...... .+++ +.-.+..+..| ......+++-||-. ....+++..-+.||.+.+++-+.-...
T Consensus 96 P~kl~vY~v~~~~g~-~~~g----~~~~L~~~yeh~l~~~a~nm~~G~Fgg--~~~~~~IcVQS~DG~L~~feqe~~~f~ 168 (418)
T PF14727_consen 96 PRKLSVYSVSLVDGT-VEHG----NQYQLELIYEHSLQRTAYNMCCGPFGG--VKGRDFICVQSMDGSLSFFEQESFAFS 168 (418)
T ss_pred CCEEEEEEEEecCCC-cccC----cEEEEEEEEEEecccceeEEEEEECCC--CCCceEEEEEecCceEEEEeCCcEEEE
Confidence 566777777321100 0000 01112222233 23456667766653 223468899999999999997754322
Q ss_pred eeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 171 KSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
..+...- -...+++. +..+.|++++.+..+.-|.
T Consensus 169 ~~lp~~l---------------lPgPl~Y~-----~~tDsfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 169 RFLPDFL---------------LPGPLCYC-----PRTDSFVTASSSWTLECYK 202 (418)
T ss_pred EEcCCCC---------------CCcCeEEe-----ecCCEEEEecCceeEEEec
Confidence 2222211 12234565 6666777777666666664
No 416
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.33 E-value=2.6 Score=33.49 Aligned_cols=74 Identities=12% Similarity=0.056 Sum_probs=45.6
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeee-cccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEee
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSA-EAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWK 224 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~ 224 (318)
.+++|++-+.+|.+++||+.+++..... ..... ..............|..+.++ .+|.-+++-+ +|..+.|+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pl-l~~~~~~~~~~~~~i~~~~lt-----~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPL-LNSSPVSDKSSSPNITSCSLT-----SNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHH-hcccccccCCCCCcEEEEEEc-----CCCCEEEEEe-CCCEEEec
Confidence 6678999999999999999988765432 10000 000000000234567778887 7787766655 68889985
Q ss_pred ec
Q 021036 225 CD 226 (318)
Q Consensus 225 ~~ 226 (318)
.+
T Consensus 94 ~~ 95 (219)
T PF07569_consen 94 PD 95 (219)
T ss_pred cc
Confidence 43
No 417
>PRK13684 Ycf48-like protein; Provisional
Probab=92.33 E-value=6.5 Score=33.61 Aligned_cols=155 Identities=13% Similarity=0.019 Sum_probs=78.6
Q ss_pred cccccCCCCCccEEEEecCCCcEEE-EEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEE
Q 021036 74 PVPQNGSSNWFSILAVGGRSGKVSL-WRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 74 ~v~~~~~s~~~~~l~~g~~dg~i~i-w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s 152 (318)
.+.++.+.+++.+++++. .|.+.. ++- .++. ...+ ...-...++++.+ .++++.+++
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~-gg~t-----------W~~~--~~~~~~~l~~i~~-------~~~g~~~~v 231 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEP-GQTA-----------WTPH--QRNSSRRLQSMGF-------QPDGNLWML 231 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCC-CCCe-----------EEEe--eCCCcccceeeeE-------cCCCCEEEE
Confidence 456667777776666554 454432 221 1111 1111 1223457888988 777777665
Q ss_pred EeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
+ ..|.+++=..+.+..-....... ......+..+.+. +++..++++ .+|.+..= .-....+
T Consensus 232 g-~~G~~~~~s~d~G~sW~~~~~~~----------~~~~~~l~~v~~~-----~~~~~~~~G-~~G~v~~S--~d~G~tW 292 (334)
T PRK13684 232 A-RGGQIRFNDPDDLESWSKPIIPE----------ITNGYGYLDLAYR-----TPGEIWAGG-GNGTLLVS--KDGGKTW 292 (334)
T ss_pred e-cCCEEEEccCCCCCccccccCCc----------cccccceeeEEEc-----CCCCEEEEc-CCCeEEEe--CCCCCCC
Confidence 5 45766543344444332221110 0011246677887 676665555 57766542 1112333
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
+.+.....-....+.+.|..+++.++ .+..|.|..|+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 293 EKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred eECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 33321122224577788777766655 45678876664
No 418
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=92.15 E-value=7.9 Score=34.15 Aligned_cols=110 Identities=15% Similarity=0.054 Sum_probs=56.1
Q ss_pred CCCccceEEeeCC----CceeEeecCCCCCCCceecchhccccccccceeeeecccccCCCCcccccccCCCCCccEEEE
Q 021036 14 DSNTHPTVAASKS----KGNSITKIPSNCCLPLITADQYASRSAMLHSLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAV 89 (318)
Q Consensus 14 ~~~~~~~~t~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~ 89 (318)
+.+...+++.+.. .+++++|+++++.+...-. ... ...+.|.+++ ..++.+
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~-----~~~---~~~~~W~~d~-----------------~~~~y~ 187 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIE-----NPK---FSSVSWSDDG-----------------KGFFYT 187 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEE-----EEE---SEEEEECTTS-----------------SEEEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccc-----ccc---cceEEEeCCC-----------------CEEEEE
Confidence 3344444443433 4488889998855332110 111 1128899887 233444
Q ss_pred ecCC----------CcEEEEEccCCccccccccccCCceeEEeeecccccc--EEEEEeeeecCCCCCCCcEEEEEeCC-
Q 021036 90 GGRS----------GKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSW--ITSISLAVLSSDSSNPQVLLVTGSSD- 156 (318)
Q Consensus 90 g~~d----------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~~~~~~~l~s~~~d- 156 (318)
...+ ..|+.|.+.++.. .-...+...... ...+.. +.++++|+..+..
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~------------~d~lvfe~~~~~~~~~~~~~-------s~d~~~l~i~~~~~ 248 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQS------------EDELVFEEPDEPFWFVSVSR-------SKDGRYLFISSSSG 248 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GG------------G-EEEEC-TTCTTSEEEEEE--------TTSSEEEEEEESS
T ss_pred EeCcccccccCCCCcEEEEEECCCChH------------hCeeEEeecCCCcEEEEEEe-------cCcccEEEEEEEcc
Confidence 3222 2367777766431 112233333222 556777 7888887754432
Q ss_pred ---CcEEEEECCCc
Q 021036 157 ---GSVRIWDGYIQ 167 (318)
Q Consensus 157 ---~~v~iwd~~~~ 167 (318)
..+.+.|+..+
T Consensus 249 ~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 249 TSESEVYLLDLDDG 262 (414)
T ss_dssp SSEEEEEEEECCCT
T ss_pred ccCCeEEEEecccc
Confidence 34777787764
No 419
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=91.89 E-value=6.7 Score=33.42 Aligned_cols=120 Identities=18% Similarity=0.131 Sum_probs=65.7
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCc------EEEeeeccCCCeeeEe-----eeeecccC--------ceeEEEEc
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGS------FDLWKCDISCNKFDKV-----GSYNAHDQ--------VVTGLAWA 251 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~------i~vw~~~~~~~~~~~~-----~~~~~h~~--------~v~~~~~~ 251 (318)
.+.++.|.+. +++..+++-+.+|. +..+.++........+ ..+..-.+ ...+|++.
T Consensus 19 ~GGlSgl~~~-----~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 19 FGGLSGLDYD-----PDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVP 93 (326)
T ss_pred cCcEeeEEEe-----CCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEe
Confidence 3467888898 66666666677777 6666544422111111 11111111 44578887
Q ss_pred CCCCEEEEecCC------CcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 252 FDGCCLYSCSQD------NFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 252 ~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
++|.++++.=.+ -.|+.++........+........-.........+....+|+++|||+.|.+
T Consensus 94 ~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 94 PDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred cCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 788877776666 6788888764333333222111000000022234567889999999995544
No 420
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.68 E-value=3.6 Score=38.97 Aligned_cols=77 Identities=18% Similarity=0.129 Sum_probs=52.2
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccC--------CCeee-Eeeee--------ecccCceeEEEEcCC
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDIS--------CNKFD-KVGSY--------NAHDQVVTGLAWAFD 253 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~--------~~~~~-~~~~~--------~~h~~~v~~~~~~~~ 253 (318)
...|..+.++ |+|.+++..+..|...+. +..+ .++.. ...++ ..+...|..+.|+|.
T Consensus 84 ~f~v~~i~~n-----~~g~~lal~G~~~v~V~~-LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~ 157 (717)
T PF10168_consen 84 LFEVHQISLN-----PTGSLLALVGPRGVVVLE-LPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPW 157 (717)
T ss_pred ceeEEEEEEC-----CCCCEEEEEcCCcEEEEE-eccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCC
Confidence 3478889998 999999999877765543 2221 11100 11111 123457889999996
Q ss_pred ---CCEEEEecCCCcEEEEEecC
Q 021036 254 ---GCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 254 ---~~~l~s~~~d~~v~iwd~~~ 273 (318)
+..|+.-..|+++|+||+..
T Consensus 158 s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 158 SESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CCCCCeEEEEecCCEEEEEecCC
Confidence 46888889999999999975
No 421
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=91.39 E-value=7.2 Score=32.21 Aligned_cols=144 Identities=12% Similarity=-0.007 Sum_probs=84.3
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+-+..+++ .+++...+..+.-++|.|+.+......+..... .+--+++. -.
T Consensus 86 ~~l~~Dv~v---------se~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt------------~gyaygv~-------vs 137 (370)
T COG5276 86 RDLFADVRV---------SEEYVYVADWSSGLRIVDISTPDSPTLIGFLNT------------DGYAYGVY-------VS 137 (370)
T ss_pred hhhhheeEe---------cccEEEEEcCCCceEEEeccCCCCcceeccccC------------CceEEEEE-------ec
Confidence 345667777 456788888888999999987654332221110 01223333 35
Q ss_pred ceEEEEEeCCCcEEEeeeccCCC-eeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCceeeeecCCCCC
Q 021036 208 LMLLAVGKGSGSFDLWKCDISCN-KFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTP 286 (318)
Q Consensus 208 ~~~l~~~~~dg~i~vw~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~ 286 (318)
|++..++..+.-..+. |..+. ++....++......-..++.| |++-..+..|+-+.+-|+.......+..+-+.
T Consensus 138 Gn~aYVadlddgfLiv--dvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~- 212 (370)
T COG5276 138 GNYAYVADLDDGFLIV--DVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNT- 212 (370)
T ss_pred CCEEEEeeccCcEEEE--ECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEec-
Confidence 8888888855555555 44432 222344444444444566666 66666677889999999987554444333221
Q ss_pred CccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 287 GLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 287 ~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
...+.++..+++--+++.
T Consensus 213 -----------g~g~~sv~vsdnr~y~vv 230 (370)
T COG5276 213 -----------GPGTYSVSVSDNRAYLVV 230 (370)
T ss_pred -----------CCceEEEEecCCeeEEEE
Confidence 115677777777666654
No 422
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.33 E-value=5.2 Score=37.52 Aligned_cols=125 Identities=10% Similarity=-0.027 Sum_probs=70.7
Q ss_pred CCccEEEEecCCCcEEEEEccCCcc-ccc-----cccccCCceeEEeeeccccccEEEEEeeeecCCCC--CCCcEEEEE
Q 021036 82 NWFSILAVGGRSGKVSLWRICVPKC-YSV-----EDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS--NPQVLLVTG 153 (318)
Q Consensus 82 ~~~~~l~~g~~dg~i~iw~~~~~~~-~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~--~~~~~l~s~ 153 (318)
.+...|+.+.+||.|.+|..++=-. +.. .........++.-.+. -...++++++ . ...++||++
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdI-------h~~~~~rlIAVS 183 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDI-------HDYKKSRLIAVS 183 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEE-------EecCcceEEEEe
Confidence 3467899999999999998753100 000 0000000011111122 2347899999 5 666788888
Q ss_pred eCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeee
Q 021036 154 SSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKC 225 (318)
Q Consensus 154 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~ 225 (318)
+....|.||-........... .. ..+.+.|.+++|......+.|. .+++++-.|.+.+|++
T Consensus 184 sNs~~VTVFaf~l~~~r~~~~-~s----------~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 184 SNSQEVTVFAFALVDERFYHV-PS----------HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cCCceEEEEEEeccccccccc-cc----------cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 888888888655321110000 00 1144577888887322222343 7888899999998865
No 423
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=91.21 E-value=0.042 Score=47.67 Aligned_cols=144 Identities=17% Similarity=0.219 Sum_probs=90.0
Q ss_pred ceeeeecccccCCCCcccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEe
Q 021036 57 SLAVAWSPVLRLSSKKYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISL 136 (318)
Q Consensus 57 ~~~~~w~p~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 136 (318)
.....|-|.+ .-++.++.+..+..||-.... .-. ....+..-.++|
T Consensus 37 pi~~~w~~e~------------------~nlavaca~tiv~~YD~agq~---------------~le-~n~tg~aldm~w 82 (615)
T KOG2247|consen 37 PIIHRWRPEG------------------HNLAVACANTIVIYYDKAGQV---------------ILE-LNPTGKALDMAW 82 (615)
T ss_pred cceeeEecCC------------------CceehhhhhhHHHhhhhhcce---------------ecc-cCCchhHhhhhh
Confidence 3447888887 447777788888889876421 111 122445567888
Q ss_pred eeecCCCCCCCcEEE-EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe
Q 021036 137 AVLSSDSSNPQVLLV-TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK 215 (318)
Q Consensus 137 ~p~~~~~~~~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~ 215 (318)
..+++.++ .+-..+.+.+||+.+....+ +.... ...-.-+.|+ +.+..++.+.
T Consensus 83 -------DkegdvlavlAek~~piylwd~n~eytqq-LE~gg-------------~~s~sll~ws-----Kg~~el~ig~ 136 (615)
T KOG2247|consen 83 -------DKEGDVLAVLAEKTGPIYLWDVNSEYTQQ-LESGG-------------TSSKSLLAWS-----KGTPELVIGN 136 (615)
T ss_pred -------ccccchhhhhhhcCCCeeechhhhhhHHH-HhccC-------------cchHHHHhhc-----cCCccccccc
Confidence 55665544 45567899999998653221 11110 1111225666 7888899999
Q ss_pred CCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCc
Q 021036 216 GSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNF 265 (318)
Q Consensus 216 ~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~ 265 (318)
..|.+.+| +..+.+ .+.....|...+++++|.+.+. .+.++.|..
T Consensus 137 ~~gn~viy--nhgtsR--~iiv~Gkh~RRgtq~av~lEd~-vil~dcd~~ 181 (615)
T KOG2247|consen 137 NAGNIVIY--NHGTSR--RIIVMGKHQRRGTQIAVTLEDY-VILCDCDNT 181 (615)
T ss_pred cccceEEE--eccchh--hhhhhcccccceeEEEecccce-eeecCcHHH
Confidence 99999999 444444 3333444888999999998874 444444433
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.19 E-value=1.6 Score=38.19 Aligned_cols=88 Identities=11% Similarity=0.078 Sum_probs=55.6
Q ss_pred cccccccCCCCCccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCC-------
Q 021036 72 KYPVPQNGSSNWFSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSS------- 144 (318)
Q Consensus 72 ~~~v~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~------- 144 (318)
...+.++..+|.+++.|+...=|.|.++|+.++..+ +.+++..+. .+.|.+......
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vv--------------rmWKGYRdA--qc~wi~~~~~~~~~~~~~~ 370 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVV--------------RMWKGYRDA--QCGWIEVPEEGDRDRSNSN 370 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhh--------------hhhccCccc--eEEEEEeeccccccccccc
Confidence 345778899999999999988999999999986644 334443321 112211111000
Q ss_pred -----CC-C-cEEEEEeCCCcEEEEECCCcceeeeecc
Q 021036 145 -----NP-Q-VLLVTGSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 145 -----~~-~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
.. . -+++-+-.-|.|.||.++.|..+..+..
T Consensus 371 ~~~~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 371 SPKSSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred ccCCCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 00 1 1344456789999999999987766543
No 425
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.10 E-value=9.5 Score=33.02 Aligned_cols=67 Identities=15% Similarity=-0.008 Sum_probs=32.5
Q ss_pred cEEEEecCCCcEEE--EEccCCccccccccccCCceeEEeeecccc-ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 85 SILAVGGRSGKVSL--WRICVPKCYSVEDCKVPTTAVLIGLFQAHN-SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 85 ~~l~~g~~dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
++|+.+..||.-.+ .|+++++ . ..+.... .......+ +++++.++-......|+-
T Consensus 49 kllF~s~~dg~~nly~lDL~t~~--------------i-~QLTdg~g~~~~g~~~-------s~~~~~~~Yv~~~~~l~~ 106 (386)
T PF14583_consen 49 KLLFASDFDGNRNLYLLDLATGE--------------I-TQLTDGPGDNTFGGFL-------SPDDRALYYVKNGRSLRR 106 (386)
T ss_dssp EEEEEE-TTSS-EEEEEETTT-E--------------E-EE---SS-B-TTT-EE--------TTSSEEEEEETTTEEEE
T ss_pred EEEEEeccCCCcceEEEEcccCE--------------E-EECccCCCCCccceEE-------ecCCCeEEEEECCCeEEE
Confidence 56666666776554 4666643 2 2222221 22223445 566666665555678888
Q ss_pred EECCCcceeeee
Q 021036 162 WDGYIQELQKSA 173 (318)
Q Consensus 162 wd~~~~~~~~~~ 173 (318)
-|+.+.+....+
T Consensus 107 vdL~T~e~~~vy 118 (386)
T PF14583_consen 107 VDLDTLEERVVY 118 (386)
T ss_dssp EETTT--EEEEE
T ss_pred EECCcCcEEEEE
Confidence 898887654433
No 426
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.10 E-value=0.82 Score=39.77 Aligned_cols=157 Identities=15% Similarity=0.084 Sum_probs=80.1
Q ss_pred eeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeeccccee-EEEEe
Q 021036 122 GLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPIS-VLSLI 200 (318)
Q Consensus 122 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~ 200 (318)
+.+..-...|..+-. .|+|+.|..-+. .++.++++.+......--....+-. ..+.|+ .+..-
T Consensus 214 ~~L~~~~~~v~qllL-------~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~--------~~~~Vte~l~lL 277 (733)
T COG4590 214 RLLSVPFSDVSQLLL-------TPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGD--------SRHQVTEQLYLL 277 (733)
T ss_pred hhcCCCccchHhhEE-------CCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCc--------hHHHHHHHHHHH
Confidence 334444456677777 789988877665 6888888876433211000000000 001111 11122
Q ss_pred eccCCCCceEEEEEeCCCcEEEeeeccCCCe-e--eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEecCCcee
Q 021036 201 LPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-F--DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 201 ~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
..|.-+++++.||-|.-| +|.+... . ..+..++-....+..+.-..+.+-+++-+..|++..+.....+..
T Consensus 278 -----~Gg~SLLv~~~dG~vsQW-Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l 351 (733)
T COG4590 278 -----SGGFSLLVVHEDGLVSQW-FDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL 351 (733)
T ss_pred -----hCceeEEEEcCCCceeee-eeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce
Confidence 467788999999999999 3554332 1 112222212233333322222345677777888877765443332
Q ss_pred eeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEE
Q 021036 278 QVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~ 315 (318)
-...-. ....-+++||.+.++++
T Consensus 352 L~~~~~---------------~~~~~~~~Sp~~~~Ll~ 374 (733)
T COG4590 352 LFERAY---------------QAPQLVAMSPNQAYLLS 374 (733)
T ss_pred ehhhhh---------------cCcceeeeCcccchhee
Confidence 211111 13356777887776654
No 427
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=90.90 E-value=11 Score=33.20 Aligned_cols=115 Identities=10% Similarity=0.033 Sum_probs=62.5
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceee--eecccccccccceeeeeecccceeEEEEeeccCC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQK--SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQS 205 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 205 (318)
...++.+.+ .+++.+++++ .+|.+.. ....++... .+..... ......+..+.+.
T Consensus 280 ~~~l~~v~~-------~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~---------~~~~~~l~~v~~~----- 336 (398)
T PLN00033 280 ARRIQNMGW-------RADGGLWLLT-RGGGLYV-SKGTGLTEEDFDFEEADI---------KSRGFGILDVGYR----- 336 (398)
T ss_pred ccceeeeeE-------cCCCCEEEEe-CCceEEE-ecCCCCcccccceeeccc---------CCCCcceEEEEEc-----
Confidence 456888999 7777777655 5565443 333343111 1110000 0011247788886
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
+++..+++| ..|.+... .-....++....-..-....+.+.|.++++.+++| .+|.|.-|
T Consensus 337 ~d~~~~a~G-~~G~v~~s--~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 337 SKKEAWAAG-GSGILLRS--TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcEEEEE-CCCcEEEe--CCCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 666666555 57877775 22333443332222234567899998877655554 67776554
No 428
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=90.75 E-value=11 Score=32.94 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=27.1
Q ss_pred CceEEEEEeCC----C--cEEEeeeccCCCeeeEeeeeecccC-----cee-EEEEcCCCCEEEEecCC
Q 021036 207 RLMLLAVGKGS----G--SFDLWKCDISCNKFDKVGSYNAHDQ-----VVT-GLAWAFDGCCLYSCSQD 263 (318)
Q Consensus 207 ~~~~l~~~~~d----g--~i~vw~~~~~~~~~~~~~~~~~h~~-----~v~-~~~~~~~~~~l~s~~~d 263 (318)
++++++.|+.+ . .++.++++..+.+|..+..+..... ... ..+...++++++.|+.+
T Consensus 221 ~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~ 289 (376)
T PRK14131 221 GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGAN 289 (376)
T ss_pred CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccC
Confidence 56677777632 2 2344444556666655544421110 011 11222456777777754
No 429
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.35 E-value=18 Score=35.06 Aligned_cols=127 Identities=13% Similarity=0.075 Sum_probs=70.9
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC-Ccceeee--ecccccccccceeeeeecccceeEEEEeeccC
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY-IQELQKS--AEAHCVPFSLLKEVVTVNTVPISVLSLILPVQ 204 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 204 (318)
...|.|+.+.|.-.. ....++++.|.++..+.+.-.. ....... +..... ...|--..+-
T Consensus 530 e~evaCLDisp~~d~-~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~i------------PRSIl~~~~e---- 592 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDA-PNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEII------------PRSILLTTFE---- 592 (1096)
T ss_pred cceeEEEecccCCCC-CCcceEEEEEeecceEEEEEECCCcceeeeeccCCCcc------------chheeeEEee----
Confidence 567999999554221 1234588999887766654433 2222211 111111 1123333443
Q ss_pred CCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 205 SPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 205 ~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+..+|+++..||.+..|.++..++.....++..-...++.--.|+..++.-+-+..|+-..+|.-+
T Consensus 593 -~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n 659 (1096)
T KOG1897|consen 593 -GDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN 659 (1096)
T ss_pred -ccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC
Confidence 5578999999999999998888887654433323334565555666654433333335544555443
No 430
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.28 E-value=5.8 Score=35.36 Aligned_cols=136 Identities=14% Similarity=0.013 Sum_probs=69.4
Q ss_pred CCcEEE-EEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeec--cCCCCceEEEEEeCCCcEEE
Q 021036 146 PQVLLV-TGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILP--VQSPRLMLLAVGKGSGSFDL 222 (318)
Q Consensus 146 ~~~~l~-s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~~~~~~l~~~~~dg~i~v 222 (318)
+..+|+ .|..-..+.-.|++.|+.+.....+.. + -+.+.+. ++.-....-++|-.+..|.-
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~dd---------------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDD---------------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCc---------------c-eeecCCchhHHhcCccceEEeecccceEE
Confidence 333443 445556777778888888877665553 1 2334310 00001112233433444333
Q ss_pred eeeccCCCeeeEeeeeecccCceeEEEEcC----CCCEEEEecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcc
Q 021036 223 WKCDISCNKFDKVGSYNAHDQVVTGLAWAF----DGCCLYSCSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAF 298 (318)
Q Consensus 223 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 298 (318)
-|...+..+. .+.. ....++.-.|+. ...++|.++..|.|++||.-+....+ -+++-.
T Consensus 542 IDPR~~gNKi-~v~e---sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--------------alP~lG 603 (776)
T COG5167 542 IDPRARGNKI-KVVE---SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--------------ALPGLG 603 (776)
T ss_pred ecccccCCce-eeee---ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--------------cCcccc
Confidence 3222333322 1111 122233333433 23489999999999999975433322 122233
Q ss_pred eeeeEEEEcCCCcEEEE
Q 021036 299 VSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 299 ~~v~~v~~sp~~~~l~~ 315 (318)
..|..+..+.+|++|++
T Consensus 604 ~aIk~idvta~Gk~ila 620 (776)
T COG5167 604 DAIKHIDVTANGKHILA 620 (776)
T ss_pred cceeeeEeecCCcEEEE
Confidence 47888888888887543
No 431
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.62 E-value=2.5 Score=38.86 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=26.2
Q ss_pred CCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 146 PQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 146 ~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+..+|++.+.|+++|+||+.+++++......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 5679999999999999999999997665433
No 432
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.57 E-value=14 Score=32.49 Aligned_cols=102 Identities=5% Similarity=-0.061 Sum_probs=57.6
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCe-ee--Eeeeeec--ccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FD--KVGSYNA--HDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~--~~~~~~~--h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
.++.+.+. +++.+++++ ..|.+..= ...++ ++ ....... -...++++.|.+++..+++ +.+|.+.
T Consensus 282 ~l~~v~~~-----~dg~l~l~g-~~G~l~~S---~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~ 351 (398)
T PLN00033 282 RIQNMGWR-----ADGGLWLLT-RGGGLYVS---KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILL 351 (398)
T ss_pred ceeeeeEc-----CCCCEEEEe-CCceEEEe---cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEE
Confidence 67788887 788877766 45665542 22221 10 1111111 1235888999988876555 4677766
Q ss_pred EEEecCCceeeeec-CCCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 268 SWIFHGNSLSQVSI-PTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 268 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
... ..++..+... ... -...++.+.|.++++.+++|.
T Consensus 352 ~s~-D~G~tW~~~~~~~~------------~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 352 RST-DGGKSWKRDKGADN------------IAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred EeC-CCCcceeEccccCC------------CCcceeEEEEcCCCceEEEeC
Confidence 553 3333322211 111 113678999988888887764
No 433
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=89.10 E-value=0.23 Score=46.60 Aligned_cols=125 Identities=15% Similarity=0.148 Sum_probs=72.7
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC--CcceeeeecccccccccceeeeeecccceeEEEEee
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY--IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 201 (318)
.++..+.|-.+.|. + ...+.+. -.-|.+.+||+. .|+....+..+.. ......+.-+.|.+
T Consensus 128 ~kgf~G~v~dl~fa-h--~~~pk~~-----~~vg~lfVy~vd~l~G~iq~~l~v~~~---------~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFA-H--TKCPKGR-----RLVGELFVYDVDVLQGEIQPQLEVTPI---------TPYGSDPQLVSWCP 190 (1283)
T ss_pred HhcCCCCccccccc-c--cCChHHH-----HHhhhhheeehHhhccccccceEEeec---------CcCCCCcceeeecc
Confidence 45667788888881 1 1123332 233788999886 4444333322211 11112233444430
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEE-----------EEcCCCCEEEEecCCCcEEEEE
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGL-----------AWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~-----------~~~~~~~~l~s~~~d~~v~iwd 270 (318)
. -++..++..+..++.|++..++.... .-+.+|...+..+ ..+|||+.++++..||.++.|.
T Consensus 191 -~-~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 191 -I-AVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQ 263 (1283)
T ss_pred -c-ccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceee
Confidence 0 04556777788899999876553322 1234466555543 3689999999999999999997
Q ss_pred ec
Q 021036 271 FH 272 (318)
Q Consensus 271 ~~ 272 (318)
+.
T Consensus 264 iy 265 (1283)
T KOG1916|consen 264 IY 265 (1283)
T ss_pred ee
Confidence 64
No 434
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=88.95 E-value=9.4 Score=34.14 Aligned_cols=149 Identities=12% Similarity=0.034 Sum_probs=80.6
Q ss_pred EEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 87 LAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 87 l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
+..|+....++--|++.| +.+..+.-|.+. -+.|.|..-...-....-+.|-.+..|.-.|.+.
T Consensus 483 ~~dg~~~~kLykmDIErG--------------kvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~ 546 (776)
T COG5167 483 YLDGGERDKLYKMDIERG--------------KVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRA 546 (776)
T ss_pred EecCCCcccceeeecccc--------------eeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccc
Confidence 344556666777777774 456667666554 4566443211000111233444555665556653
Q ss_pred cc-eeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCce
Q 021036 167 QE-LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVV 245 (318)
Q Consensus 167 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v 245 (318)
.. .+....... .......++..- -...++|+++..|.|++|| .-..+ ....+.+-...|
T Consensus 547 ~gNKi~v~esKd----------Y~tKn~Fss~~t------TesGyIa~as~kGDirLyD--Rig~r--AKtalP~lG~aI 606 (776)
T COG5167 547 RGNKIKVVESKD----------YKTKNKFSSGMT------TESGYIAAASRKGDIRLYD--RIGKR--AKTALPGLGDAI 606 (776)
T ss_pred cCCceeeeeehh----------cccccccccccc------ccCceEEEecCCCceeeeh--hhcch--hhhcCcccccce
Confidence 22 111111100 001112233332 2456899999999999995 22211 222355667789
Q ss_pred eEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 246 TGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 246 ~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
-.+..+.+|.++++.+. ..+.+-|++
T Consensus 607 k~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 607 KHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred eeeEeecCCcEEEEeec-ceEEEEecc
Confidence 99999999997765553 467777765
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=88.94 E-value=16 Score=32.26 Aligned_cols=63 Identities=16% Similarity=0.051 Sum_probs=30.3
Q ss_pred cceeEEEEeeccCCCCceEEEEEe-CCCcEEEeeeccCCCeeeEeeeee-c---------------ccCceeEEEEcCCC
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGK-GSGSFDLWKCDISCNKFDKVGSYN-A---------------HDQVVTGLAWAFDG 254 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~-~---------------h~~~v~~~~~~~~~ 254 (318)
.-|+.|.+| .|.++|..++ ..|.|+.||+.-. ..++.+.+.. + -.+...-|..|.||
T Consensus 312 ~LitDI~iS-----lDDrfLYvs~W~~GdvrqYDISDP-~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DG 385 (461)
T PF05694_consen 312 PLITDILIS-----LDDRFLYVSNWLHGDVRQYDISDP-FNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDG 385 (461)
T ss_dssp -----EEE------TTS-EEEEEETTTTEEEEEE-SST-TS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTS
T ss_pred CceEeEEEc-----cCCCEEEEEcccCCcEEEEecCCC-CCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCC
Confidence 357889998 7888777766 6899999965321 2223333322 1 01233567788888
Q ss_pred CEEEEe
Q 021036 255 CCLYSC 260 (318)
Q Consensus 255 ~~l~s~ 260 (318)
+.|...
T Consensus 386 kRlYvT 391 (461)
T PF05694_consen 386 KRLYVT 391 (461)
T ss_dssp SEEEEE
T ss_pred eEEEEE
Confidence 876544
No 436
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.90 E-value=1.9 Score=39.64 Aligned_cols=69 Identities=20% Similarity=0.245 Sum_probs=41.3
Q ss_pred CceEEEEEeCCCcEEEeeecc---CCCeeeEeeeeecc--------------------cCceeEEEEcC----CCCEEEE
Q 021036 207 RLMLLAVGKGSGSFDLWKCDI---SCNKFDKVGSYNAH--------------------DQVVTGLAWAF----DGCCLYS 259 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~---~~~~~~~~~~~~~h--------------------~~~v~~~~~~~----~~~~l~s 259 (318)
+...++.+..||.+.....+. ....+.... +..+ ...+..++.+. +..++++
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEEL-FNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE-----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEE-eCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 567788888899888876543 222222111 1111 13345566666 5679999
Q ss_pred ecCCCcEEEEEecCCce
Q 021036 260 CSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~ 276 (318)
.+.|+++|+||+.++++
T Consensus 236 l~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EETTSEEEEEETTTTCE
T ss_pred EeCCCeEEEEECCCCeE
Confidence 99999999999999877
No 437
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.82 E-value=7.3 Score=38.76 Aligned_cols=85 Identities=15% Similarity=0.156 Sum_probs=50.2
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC----Cc---ceeeeeccccccc-cc---ceeeeeecccceeE
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY----IQ---ELQKSAEAHCVPF-SL---LKEVVTVNTVPISV 196 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~----~~---~~~~~~~~~~~~~-~~---~~~~~~~~~~~v~~ 196 (318)
...|+|+.+ ..+|+.|++|- || .+|.+. .+ +....+....... .+ +-.+...+..+|..
T Consensus 178 g~~V~~I~~-------t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 178 GVSVNCITY-------TENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred CceEEEEEe-------ccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 457889998 88998877765 45 445432 11 1111111000000 00 00111245668999
Q ss_pred EEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 197 LSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 197 l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+.++ ..-..+.+-+..|+|.+|++..
T Consensus 248 i~ID-----~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITID-----NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEec-----cccceeeeeccCceEEEEEccC
Confidence 9998 6778899999999999997643
No 438
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.80 E-value=6 Score=39.32 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=49.5
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee--ccCCCe----eeEe--------------eeee-cccCceeEEE
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC--DISCNK----FDKV--------------GSYN-AHDQVVTGLA 249 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~--~~~~~~----~~~~--------------~~~~-~h~~~v~~~~ 249 (318)
+..|+++... .+|+.|++|- || .+|.+ ....+- +..+ -.+. .+..+|..++
T Consensus 178 g~~V~~I~~t-----~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ 249 (1311)
T KOG1900|consen 178 GVSVNCITYT-----ENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQIT 249 (1311)
T ss_pred CceEEEEEec-----cCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeE
Confidence 5567788866 7888887776 55 44432 111110 0000 1122 4567899999
Q ss_pred EcCCCCEEEEecCCCcEEEEEecC
Q 021036 250 WAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 250 ~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
.+..-..+.+-++.|+|..||+..
T Consensus 250 ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 250 IDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccccceeeeeccCceEEEEEccC
Confidence 988777899999999999999976
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.34 E-value=7.6 Score=27.96 Aligned_cols=110 Identities=13% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCCcEEEEECCCcce--------eeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeC
Q 021036 145 NPQVLLVTGSSDGSVRIWDGYIQEL--------QKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKG 216 (318)
Q Consensus 145 ~~~~~l~s~~~d~~v~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~ 216 (318)
.....|+.++.-|.|.|++...... +..+.. ...|++|+-..-....+.+.|+.|+
T Consensus 8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---------------n~~italaaG~l~~~~~~D~LliGt- 71 (136)
T PF14781_consen 8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---------------NQEITALAAGRLKPDDGRDCLLIGT- 71 (136)
T ss_pred CCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---------------CCceEEEEEEecCCCCCcCEEEEec-
Confidence 3344688888889999998764321 122222 2256666654211113456777777
Q ss_pred CCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcC---CCCEEEEecCCCcEEEEEecCCc
Q 021036 217 SGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAF---DGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 217 dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
...+..||++....- . ++.-...|.++.+-. ...-++..+.+..|.-||....+
T Consensus 72 ~t~llaYDV~~N~d~--F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 72 QTSLLAYDVENNSDL--F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cceEEEEEcccCchh--h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 566888865433322 1 122335666666532 12234444446677777765543
No 440
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=88.33 E-value=14 Score=30.87 Aligned_cols=60 Identities=15% Similarity=0.123 Sum_probs=36.7
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC----CeeeEeeeeecccCceeEEEEcC--CCCEEEE
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC----NKFDKVGSYNAHDQVVTGLAWAF--DGCCLYS 259 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s 259 (318)
....++++ ++|.++++--..+.|..|+ ..+ ...+.+..-...-..+.++.+.+ +|.+.+.
T Consensus 187 ~s~g~~~D-----~~G~ly~~~~~~~aI~~w~--~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 187 QSDGMAID-----PNGNLYFTDVEQNAIGCWD--PDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp SECEEEEE-----TTTEEEEEECCCTEEEEEE--TTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCceEEEC-----CCCcEEEecCCCCeEEEEe--CCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 55678888 8999999999999999995 433 12222222111134667888888 6654443
No 441
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.21 E-value=7.8 Score=27.91 Aligned_cols=113 Identities=17% Similarity=0.069 Sum_probs=64.8
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
...|++++.-|+|.|++.......... ....++.+ .-...|++|+--|+.+ ..+.+.|+.|+. ..+..||
T Consensus 10 ~pcL~~aT~~gKV~IH~ph~~~~~~~~------~~~~i~~L-Nin~~italaaG~l~~--~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 10 HPCLACATTGGKVFIHNPHERGQRTGR------QDSDISFL-NINQEITALAAGRLKP--DDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred ceeEEEEecCCEEEEECCCcccccccc------ccCceeEE-ECCCceEEEEEEecCC--CCCcCEEEEecc-ceEEEEE
Confidence 367888888999999987643211000 01222333 2356788888877765 334567777765 5899999
Q ss_pred CCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEe
Q 021036 164 GYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLW 223 (318)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw 223 (318)
+.....+...+.+. .++++.+---.+ ....++++|+ +..|.-|
T Consensus 80 V~~N~d~Fyke~~D---------------Gvn~i~~g~~~~-~~~~l~ivGG-ncsi~Gf 122 (136)
T PF14781_consen 80 VENNSDLFYKEVPD---------------GVNAIVIGKLGD-IPSPLVIVGG-NCSIQGF 122 (136)
T ss_pred cccCchhhhhhCcc---------------ceeEEEEEecCC-CCCcEEEECc-eEEEEEe
Confidence 98765543322222 566666531111 1234444444 6666666
No 442
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.10 E-value=11 Score=29.60 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=63.9
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCC---C---c
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSD---G---S 158 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d---~---~ 158 (318)
..|+.+...+.|.+|++.+.+ .+++..+..- +.|..+.+ +..|++|+|-=.+ . .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~------------~~~~~~F~Tv-~~V~~l~y-------~~~GDYlvTlE~k~~~~~~~f 88 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEE------------CPLLCTFSTV-GRVLQLVY-------SEAGDYLVTLEEKNKRSPVDF 88 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCC------------CceeEEEcch-hheeEEEe-------ccccceEEEEEeecCCccceE
Confidence 344444556789999998544 3455666553 78999999 8999999996332 2 5
Q ss_pred EEEE-ECCC----cceee-eecccc------ccccc-ceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeee
Q 021036 159 VRIW-DGYI----QELQK-SAEAHC------VPFSL-LKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKC 225 (318)
Q Consensus 159 v~iw-d~~~----~~~~~-~~~~~~------~~~~~-~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~ 225 (318)
+|+| +.+. .+.+. .+-+|. .+... +.-+.-.-..++.+++.. |-.|++ +.|+ ++++.+|.+
T Consensus 89 vR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC----~~tG~L-lVg~-~~~l~lf~l 162 (215)
T PF14761_consen 89 VRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACC----PVTGNL-LVGC-GNKLVLFTL 162 (215)
T ss_pred EEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEec----CCCCCE-EEEc-CCEEEEEEE
Confidence 6665 2221 12222 111211 00010 111122224467788888 234554 4444 678899954
No 443
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=19 Score=31.78 Aligned_cols=124 Identities=13% Similarity=0.130 Sum_probs=77.8
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
..++|.++.| +++.+.|++--.|++|.+++....+...... ++. ......|...+|. .
T Consensus 65 d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~c---------k~k~~~IlGF~W~-----~ 122 (657)
T KOG2377|consen 65 DKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QEC---------KTKNANILGFCWT-----S 122 (657)
T ss_pred CCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHh---------ccCcceeEEEEEe-----c
Confidence 4569999999 9999999999999999999885433222211 110 1223357778886 3
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCE--EEEecCCCcEEEEEecCCcee
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCC--LYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--l~s~~~d~~v~iwd~~~~~~~ 277 (318)
+ .-+|.-...| +.+|..+.... .+...+.|...|.-..|.++-+. |+++-..+++.=+-++++...
T Consensus 123 s-~e~A~i~~~G-~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~v~ 190 (657)
T KOG2377|consen 123 S-TEIAFITDQG-IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGTMS 190 (657)
T ss_pred C-eeEEEEecCC-eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeeceee
Confidence 3 5555555333 67775554433 33445567778888889998763 333335556666666654443
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.39 E-value=3.1 Score=23.23 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=23.7
Q ss_pred ccEEEEEeeeecCCCCC-CC--cEEEEEeCCCcEEEEECCC
Q 021036 129 SWITSISLAVLSSDSSN-PQ--VLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~-~~--~~l~s~~~d~~v~iwd~~~ 166 (318)
+.|.++.| +| .+ ++|+-+-.-+.|.++|+++
T Consensus 1 GAvR~~kF-------sP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKF-------SPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEe-------CCCCCcccEEEEEccCCeEEEEEccc
Confidence 35788999 43 33 5777777779999999995
No 445
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=86.91 E-value=16 Score=30.03 Aligned_cols=82 Identities=9% Similarity=-0.112 Sum_probs=52.8
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
..+.|+.. |+|..-++.-.+..|-.- |...+..+.+..-......-..+--+|.|+.-++....+.+..||..
T Consensus 190 gpyGi~at-----pdGsvwyaslagnaiari--dp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs 262 (353)
T COG4257 190 GPYGICAT-----PDGSVWYASLAGNAIARI--DPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPS 262 (353)
T ss_pred CCcceEEC-----CCCcEEEEeccccceEEc--ccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCcc
Confidence 55678887 999988887666666665 55554433333223322333455557788888888788889888887
Q ss_pred CCceeeeec
Q 021036 273 GNSLSQVSI 281 (318)
Q Consensus 273 ~~~~~~~~~ 281 (318)
.........
T Consensus 263 ~~sW~eypL 271 (353)
T COG4257 263 VTSWIEYPL 271 (353)
T ss_pred cccceeeeC
Confidence 655554443
No 446
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.68 E-value=19 Score=30.74 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=55.5
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceE
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLML 210 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~ 210 (318)
-+.|+| .|+|++|++ ...|.|++++ ..+.....+.... .+..........+++++++. .++.+
T Consensus 4 P~~~a~-------~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-------~v~~~~~~gllgia~~p~f~-~n~~l 66 (331)
T PF07995_consen 4 PRSMAF-------LPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-------EVFADGERGLLGIAFHPDFA-SNGYL 66 (331)
T ss_dssp EEEEEE-------ETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-------TTBTSTTBSEEEEEE-TTCC-CC-EE
T ss_pred ceEEEE-------eCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-------cccccccCCcccceeccccC-CCCEE
Confidence 467899 788877765 5599999999 3333311111000 11122344678889982221 23555
Q ss_pred EEEEeCC--------CcEEEeeeccCCCee---eEe-eeeec---ccCceeEEEEcCCCCEEEEecCCC
Q 021036 211 LAVGKGS--------GSFDLWKCDISCNKF---DKV-GSYNA---HDQVVTGLAWAFDGCCLYSCSQDN 264 (318)
Q Consensus 211 l~~~~~d--------g~i~vw~~~~~~~~~---~~~-~~~~~---h~~~v~~~~~~~~~~~l~s~~~d~ 264 (318)
.+..+.. ..|.-|.++...... +.+ ..+.. ....-..|.|.|||.+.++.+..+
T Consensus 67 Yv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 67 YVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred EEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 4444422 234444333221111 111 11121 223346699999997666555443
No 447
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=86.58 E-value=18 Score=30.37 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=34.0
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
-|++|.. ..+|++|+|+-.-.+|.+.|-.+|+.+..+.+.
T Consensus 145 HiNsV~~-------~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 145 HINSVDK-------DDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred Eeeeeee-------cCCccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 3677777 788899999988899999999999999888665
No 448
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.38 E-value=3.9 Score=27.16 Aligned_cols=42 Identities=12% Similarity=-0.022 Sum_probs=26.7
Q ss_pred ecCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 260 CSQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
+..+|.+..||..+++...+.-.-. --++|+.+||+.+++.+
T Consensus 33 ~~~~GRll~ydp~t~~~~vl~~~L~---------------fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 33 GRPTGRLLRYDPSTKETTVLLDGLY---------------FPNGVALSPDESFVLVA 74 (89)
T ss_dssp T---EEEEEEETTTTEEEEEEEEES---------------SEEEEEE-TTSSEEEEE
T ss_pred CCCCcCEEEEECCCCeEEEehhCCC---------------ccCeEEEcCCCCEEEEE
Confidence 3456788888988877654432222 23899999999988765
No 449
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=85.97 E-value=34 Score=32.99 Aligned_cols=22 Identities=5% Similarity=-0.123 Sum_probs=19.1
Q ss_pred EEEEecCCCcEEEEEecCCcee
Q 021036 256 CLYSCSQDNFVRSWIFHGNSLS 277 (318)
Q Consensus 256 ~l~s~~~d~~v~iwd~~~~~~~ 277 (318)
.++.++.+|.+++.|.++++..
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l 482 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPI 482 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEE
Confidence 7889999999999999987654
No 450
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=85.77 E-value=9.5 Score=30.34 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=47.3
Q ss_pred CCceEEEEEeCCCcEEEeeeccCCCeeeEee----e-ee-------cccCceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 206 PRLMLLAVGKGSGSFDLWKCDISCNKFDKVG----S-YN-------AHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 206 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~----~-~~-------~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..+.++++-+.+|.+++|| +...+..... . +. .....|..+.++.+|.-+++-+ +|..+.|+..-
T Consensus 20 ~~~~~Ll~iT~~G~l~vWn--l~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWN--LKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCCEEEEEeCCCeEEEEE--CCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 4577888888999999995 4444421100 0 11 2456788888998888777665 57889998776
Q ss_pred Cceeee
Q 021036 274 NSLSQV 279 (318)
Q Consensus 274 ~~~~~~ 279 (318)
+....+
T Consensus 97 ~~W~~v 102 (219)
T PF07569_consen 97 GCWIRV 102 (219)
T ss_pred ceeEEe
Confidence 555443
No 451
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.77 E-value=20 Score=31.67 Aligned_cols=48 Identities=19% Similarity=-0.021 Sum_probs=38.2
Q ss_pred eccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccc
Q 021036 124 FQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCV 178 (318)
Q Consensus 124 ~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~ 178 (318)
+......+.++.. +|.+++.++...=|+|.++|+.++..+...++...
T Consensus 303 l~D~~R~~~~i~~-------sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 303 LPDSKREGESICL-------SPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eccCCceEEEEEE-------CCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 3344556888999 88888888887779999999999988887776654
No 452
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.68 E-value=25 Score=31.77 Aligned_cols=27 Identities=11% Similarity=-0.082 Sum_probs=20.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD 163 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd 163 (318)
.|..+.. ++.|..++.++.+|.+.++=
T Consensus 105 eV~~vl~-------s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 105 EVYQVLL-------SPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEe-------cCCCceEEEecCCeeEEEEc
Confidence 4666777 78888888888888766553
No 453
>PRK13684 Ycf48-like protein; Provisional
Probab=85.31 E-value=23 Score=30.34 Aligned_cols=104 Identities=10% Similarity=-0.016 Sum_probs=56.2
Q ss_pred cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC-CeeeEeeee-ecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC-NKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~-~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
..++.+.+. +++..++++. .|.+.+= .... ..++.+..- ..-...+.++.+.|++..+++ +.+|.+. .
T Consensus 215 ~~l~~i~~~-----~~g~~~~vg~-~G~~~~~--s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~-G~~G~v~-~ 284 (334)
T PRK13684 215 RRLQSMGFQ-----PDGNLWMLAR-GGQIRFN--DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAG-GGNGTLL-V 284 (334)
T ss_pred ccceeeeEc-----CCCCEEEEec-CCEEEEc--cCCCCCccccccCCccccccceeeEEEcCCCCEEEE-cCCCeEE-E
Confidence 367888888 7888777664 6766541 1112 233222111 011235778899998875554 4567654 3
Q ss_pred EecCCceeeeecC-CCCCCccccccCCCcceeeeEEEEcCCCcEEEEEe
Q 021036 270 IFHGNSLSQVSIP-TNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMVQ 317 (318)
Q Consensus 270 d~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~~ 317 (318)
....++..+.... ... ....+.+.|..+++.+++|.
T Consensus 285 S~d~G~tW~~~~~~~~~------------~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 285 SKDGGKTWEKDPVGEEV------------PSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred eCCCCCCCeECCcCCCC------------CcceEEEEEeCCCceEEECC
Confidence 3443333222111 110 12567888888778887764
No 454
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.28 E-value=24 Score=30.64 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=68.1
Q ss_pred cEEEEEeeeecCCCCCCC-cEEEEEeCCCcEEEEECCC---cc----eeeeecccccccccceeeeeecccceeEEEEee
Q 021036 130 WITSISLAVLSSDSSNPQ-VLLVTGSSDGSVRIWDGYI---QE----LQKSAEAHCVPFSLLKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~-~~l~s~~~d~~v~iwd~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 201 (318)
.++.++.- .+ ..+| -+.+....+|.+..|.+.. +. .++.|.. ...+..+..+
T Consensus 157 e~yGlcly--~~--~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---------------~sQ~EGCVVD- 216 (381)
T PF02333_consen 157 EPYGLCLY--RS--PSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---------------GSQPEGCVVD- 216 (381)
T ss_dssp SEEEEEEE--E---TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----------------SS-EEEEEEE-
T ss_pred cceeeEEe--ec--CCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---------------CCcceEEEEe-
Confidence 46667651 11 2234 4667778889888887752 22 2333332 2267788888
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeeccCCCe-eeEeeeeec--ccCceeEEEEc--CCCC--EEEEecCCCcEEEEEecC
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDISCNK-FDKVGSYNA--HDQVVTGLAWA--FDGC--CLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~-~~~~~~~~~--h~~~v~~~~~~--~~~~--~l~s~~~d~~v~iwd~~~ 273 (318)
.....|+.+-.+--|.-|+.+..... ...+....+ ....|..|+.- .+++ +|++.-.+++..+|+...
T Consensus 217 ----De~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 217 ----DETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp ----TTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred ----cccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 67778888888876766655544332 223333222 34677777764 3443 455555677899999875
No 455
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=82.62 E-value=16 Score=29.69 Aligned_cols=51 Identities=22% Similarity=0.243 Sum_probs=38.9
Q ss_pred ccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeecccc
Q 021036 127 HNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHC 177 (318)
Q Consensus 127 h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~ 177 (318)
+...|+|++-.+.+......-..|+.|.++|.|.|.|..............
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lps 225 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPS 225 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCC
Confidence 346799999888776544455789999999999999998777666655433
No 456
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.51 E-value=15 Score=27.88 Aligned_cols=36 Identities=17% Similarity=0.162 Sum_probs=26.5
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYI 166 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 166 (318)
.|.+++|.|.-.. ...+-+|++.+.++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~-~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLG-PNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCC-CCCceEEEEEcCCCeEEEEecCC
Confidence 7899999665432 12345788889999999998664
No 457
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.55 E-value=27 Score=28.45 Aligned_cols=115 Identities=16% Similarity=0.014 Sum_probs=64.4
Q ss_pred cEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEE-CCCcceee-eecccccccccceeeeeecccceeEEEEeeccCCCC
Q 021036 130 WITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWD-GYIQELQK-SAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPR 207 (318)
Q Consensus 130 ~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~ 207 (318)
.+....| .+++...+....+...+++. ...++... ...... ....|..+.++ ||
T Consensus 67 ~l~~PS~-------d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~------------~~~~I~~l~vS-----pD 122 (253)
T PF10647_consen 67 SLTRPSW-------DPDGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPG------------LRGRITALRVS-----PD 122 (253)
T ss_pred ccccccc-------cCCCCEEEEEcCCCceEEEEecCCCcceeEEecccc------------cCCceEEEEEC-----CC
Confidence 6777788 77777777766666666664 23332211 111111 01178999999 99
Q ss_pred ceEEEEEe---CCCcEEEeeeccC-CCee----eEeeeeecccCceeEEEEcCCCCEEEEecCC-CcEEE
Q 021036 208 LMLLAVGK---GSGSFDLWKCDIS-CNKF----DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQD-NFVRS 268 (318)
Q Consensus 208 ~~~l~~~~---~dg~i~vw~~~~~-~~~~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~~v~i 268 (318)
|..+|.-. .++.|.+=-+... .+.. .+..........+..++|.+++.+++.+... +.+..
T Consensus 123 G~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 123 GTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGGPVVR 192 (253)
T ss_pred CcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCCceeE
Confidence 98777665 3466666432211 1200 1111112234678999999999876655443 33443
No 458
>PLN02193 nitrile-specifier protein
Probab=81.54 E-value=41 Score=30.42 Aligned_cols=70 Identities=10% Similarity=0.035 Sum_probs=40.0
Q ss_pred CceEEEEEeCCC----cEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCC--------------Cc
Q 021036 207 RLMLLAVGKGSG----SFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQD--------------NF 265 (318)
Q Consensus 207 ~~~~l~~~~~dg----~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d--------------~~ 265 (318)
++++++.++.++ .+.+| |..+.+|..+..... ......++. -++++++.|+.+ ..
T Consensus 328 ~gkiyviGG~~g~~~~dv~~y--D~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~nd 403 (470)
T PLN02193 328 QGKVWVVYGFNGCEVDDVHYY--DPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDG 403 (470)
T ss_pred CCcEEEEECCCCCccCceEEE--ECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceecc
Confidence 466777776553 46666 677777766543211 111112222 246677777753 24
Q ss_pred EEEEEecCCceeeee
Q 021036 266 VRSWIFHGNSLSQVS 280 (318)
Q Consensus 266 v~iwd~~~~~~~~~~ 280 (318)
+.+||+.+.....+.
T Consensus 404 v~~~D~~t~~W~~~~ 418 (470)
T PLN02193 404 TFALDTETLQWERLD 418 (470)
T ss_pred EEEEEcCcCEEEEcc
Confidence 788888877766544
No 459
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.50 E-value=38 Score=30.07 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=47.8
Q ss_pred cccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEE
Q 021036 190 NTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSW 269 (318)
Q Consensus 190 ~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iw 269 (318)
..++|.++.|+ +|.+.+|+--.+..|.+++.-....+.+...+.+..+..|.+..|+... -+|.-... -+-+|
T Consensus 65 d~G~I~SIkFS-----lDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~i~~~-G~e~y 137 (657)
T KOG2377|consen 65 DKGEIKSIKFS-----LDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAFITDQ-GIEFY 137 (657)
T ss_pred CCCceeEEEec-----cCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEEEecC-CeEEE
Confidence 35589999999 9999999999999999995422222212223334445568888888663 34433332 24455
Q ss_pred Ee
Q 021036 270 IF 271 (318)
Q Consensus 270 d~ 271 (318)
..
T Consensus 138 ~v 139 (657)
T KOG2377|consen 138 QV 139 (657)
T ss_pred EE
Confidence 44
No 460
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.29 E-value=13 Score=28.28 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=25.2
Q ss_pred ceeEEEEcCCC------CEEEEecCCCcEEEEEecC
Q 021036 244 VVTGLAWAFDG------CCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 244 ~v~~~~~~~~~------~~l~s~~~d~~v~iwd~~~ 273 (318)
.+.+++|||.| .+|++...++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 67899999953 3889999999999998764
No 461
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=80.65 E-value=4.7 Score=20.53 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=20.3
Q ss_pred EEEEEeCCCcEEEEECCCcceeee
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKS 172 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~ 172 (318)
.++.++.++.+..+|..+|+....
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEE
Confidence 577888999999999999887654
No 462
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=80.50 E-value=6.9 Score=20.93 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccCceeEEEEcCCCCEEEEec-CC--CcEEEE
Q 021036 241 HDQVVTGLAWAFDGCCLYSCS-QD--NFVRSW 269 (318)
Q Consensus 241 h~~~v~~~~~~~~~~~l~s~~-~d--~~v~iw 269 (318)
....-....|+|||+.|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 344567789999999776544 44 555554
No 463
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.21 E-value=7.4 Score=21.05 Aligned_cols=27 Identities=30% Similarity=0.159 Sum_probs=18.4
Q ss_pred CCCCEEEE-ecCCCcEEEEEecCCceee
Q 021036 252 FDGCCLYS-CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 252 ~~~~~l~s-~~~d~~v~iwd~~~~~~~~ 278 (318)
|++++|++ ...+++|.++|..+.....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 56665554 4467899999997765543
No 464
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=78.36 E-value=68 Score=31.08 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=71.7
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeC----CCcEEEEECCCcc-eeeeeccc----------cccccccee-eeeeccc
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSS----DGSVRIWDGYIQE-LQKSAEAH----------CVPFSLLKE-VVTVNTV 192 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~----d~~v~iwd~~~~~-~~~~~~~~----------~~~~~~~~~-~~~~~~~ 192 (318)
..++.+.|.|..++.......+++.+. ...|.-|.++... .++..... ..+...++. ....-..
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 367788887654443333445555543 3378999987543 22211000 000000111 1112234
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee-----------eEeeeee--c----ccCceeEEEEcCCCC
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF-----------DKVGSYN--A----HDQVVTGLAWAFDGC 255 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~-----------~~~~~~~--~----h~~~v~~~~~~~~~~ 255 (318)
.|.++... .-+..++..-.||+|.++| ..+-+. ..+..+. | .-..+..++|||.+.
T Consensus 261 ~V~si~~~-----~~~~~v~~~~~DGsI~~~d--r~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c 333 (753)
T PF11635_consen 261 RVVSITSP-----ELDIVVAFAFSDGSIEFRD--RNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC 333 (753)
T ss_pred eEEEEEec-----ccCcEEEEEEcCCeEEEEe--cCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc
Confidence 56666665 5677899999999999995 222110 0111111 1 112334588999999
Q ss_pred EEEEecCCCcEE
Q 021036 256 CLYSCSQDNFVR 267 (318)
Q Consensus 256 ~l~s~~~d~~v~ 267 (318)
.++.-..+|.+.
T Consensus 334 ~~v~~~~~~~~~ 345 (753)
T PF11635_consen 334 SLVQIDEDGKTK 345 (753)
T ss_pred eEEEEecCCCce
Confidence 888888888866
No 465
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=78.11 E-value=5.2 Score=37.41 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=47.2
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.+..+.-+ |.+..++.++.||.|.+|++-.+... .+.+.. .+-..+.|...| |++...|..+.-|.-.
T Consensus 16 ~~~aiqsh-----p~~~s~v~~~~d~si~lfn~~~r~qs--ki~~~~---~p~~nlv~tnhg--l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 16 FTTAIQSH-----PGGQSFVLAHQDGSIILFNFIPRRQS--KICEEA---KPKENLVFTNHG--LVTATSDRRALAWKED 83 (1636)
T ss_pred eeeeeeec-----CCCceEEEEecCCcEEEEeecccchh--hhhhhc---CCccceeeeccc--eEEEeccchhheeecc
Confidence 34566666 89999999999999999987666543 333322 233556676555 6666677777777654
Q ss_pred C
Q 021036 273 G 273 (318)
Q Consensus 273 ~ 273 (318)
+
T Consensus 84 g 84 (1636)
T KOG3616|consen 84 G 84 (1636)
T ss_pred C
Confidence 4
No 466
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.03 E-value=37 Score=30.13 Aligned_cols=108 Identities=14% Similarity=0.051 Sum_probs=67.1
Q ss_pred CccEEEEecCCCcEEEE-EccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEE
Q 021036 83 WFSILAVGGRSGKVSLW-RICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRI 161 (318)
Q Consensus 83 ~~~~l~~g~~dg~i~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~i 161 (318)
.|.-+++++.||-|.-| |+..+... ....++.++-...++..+.- ..+.+-+++-+..|++.+
T Consensus 279 Gg~SLLv~~~dG~vsQWFdvr~~~~p---------~l~h~R~f~l~pa~~~~l~p-------e~~rkgF~~l~~~G~L~~ 342 (733)
T COG4590 279 GGFSLLVVHEDGLVSQWFDVRRDGQP---------HLNHIRNFKLAPAEVQFLLP-------ETNRKGFYSLYRNGTLQS 342 (733)
T ss_pred CceeEEEEcCCCceeeeeeeecCCCC---------cceeeeccccCcccceeecc-------ccccceEEEEcCCCceee
Confidence 35677888999999877 44332110 12344444444455555544 455567888888999988
Q ss_pred EECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeecc
Q 021036 162 WDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDI 227 (318)
Q Consensus 162 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~ 227 (318)
+-....+.+-.-...+ .+..++++ |.+.++++-. .|.|+++.++-
T Consensus 343 f~st~~~~lL~~~~~~---------------~~~~~~~S-----p~~~~Ll~e~-~gki~~~~l~N 387 (733)
T COG4590 343 FYSTSEKLLLFERAYQ---------------APQLVAMS-----PNQAYLLSED-QGKIRLAQLEN 387 (733)
T ss_pred eecccCcceehhhhhc---------------CcceeeeC-----cccchheeec-CCceEEEEecC
Confidence 8765544332211111 45678888 8998888765 77899985543
No 467
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=77.88 E-value=50 Score=30.38 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=44.3
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccc-cccEE----------EEEeeeecCCCCCCCcEEEE
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAH-NSWIT----------SISLAVLSSDSSNPQVLLVT 152 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~----------~~~~~p~~~~~~~~~~~l~s 152 (318)
+..|+.++.++.|.-.|.++++.+ -.+... ...+. .+.+ .+..++.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~l--------------W~~~~~~~~~~~~~~~~~~~~rg~av---------~~~~v~v 125 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKEL--------------WKYDPKLPDDVIPVMCCDVVNRGVAL---------YDGKVFF 125 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCcee--------------eEecCCCCcccccccccccccccceE---------ECCEEEE
Confidence 467777888889999999987532 221110 00111 1122 2346777
Q ss_pred EeCCCcEEEEECCCcceeeeecc
Q 021036 153 GSSDGSVRIWDGYIQELQKSAEA 175 (318)
Q Consensus 153 ~~~d~~v~iwd~~~~~~~~~~~~ 175 (318)
++.|+.|.-.|..+|+.+.....
T Consensus 126 ~t~dg~l~ALDa~TGk~~W~~~~ 148 (527)
T TIGR03075 126 GTLDARLVALDAKTGKVVWSKKN 148 (527)
T ss_pred EcCCCEEEEEECCCCCEEeeccc
Confidence 88899999999999998876543
No 468
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.58 E-value=66 Score=30.54 Aligned_cols=31 Identities=6% Similarity=-0.095 Sum_probs=24.3
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
+.+..+..||+.++|+--..+|.|.+-+...
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~ 247 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDL 247 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecch
Confidence 4567788888888888888888888877654
No 469
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.83 E-value=56 Score=29.33 Aligned_cols=55 Identities=18% Similarity=0.039 Sum_probs=34.6
Q ss_pred ceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeee-----cccCceeEEEEcCCC
Q 021036 193 PISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYN-----AHDQVVTGLAWAFDG 254 (318)
Q Consensus 193 ~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~ 254 (318)
....|+|. |++++|++--..|.|++++ ..+.....+..+. ........|+++|+-
T Consensus 31 ~Pw~mafl-----PDG~llVtER~~G~I~~v~--~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWG-----PDNQLWVTERATGKILRVN--PETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEc-----CCCeEEEEEecCCEEEEEe--CCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 45678888 9998777765579999884 3332211222111 125667899999874
No 470
>PLN02153 epithiospecifier protein
Probab=76.81 E-value=47 Score=28.42 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=37.6
Q ss_pred CCceEEEEEeCCC-----------cEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCC--------
Q 021036 206 PRLMLLAVGKGSG-----------SFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQD-------- 263 (318)
Q Consensus 206 ~~~~~l~~~~~dg-----------~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d-------- 263 (318)
-++++++.|+.+. .+.+| |..+.++..+..... .......+. -++++++.++.+
T Consensus 136 ~~~~iyv~GG~~~~~~~~~~~~~~~v~~y--d~~~~~W~~l~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~gG~ 211 (341)
T PLN02153 136 DENHVYVFGGVSKGGLMKTPERFRTIEAY--NIADGKWVQLPDPGENFEKRGGAGFAV--VQGKIWVVYGFATSILPGGK 211 (341)
T ss_pred ECCEEEEECCccCCCccCCCcccceEEEE--ECCCCeEeeCCCCCCCCCCCCcceEEE--ECCeEEEEeccccccccCCc
Confidence 3567777777531 35566 667777765443210 111111122 245555555432
Q ss_pred -----CcEEEEEecCCceeeee
Q 021036 264 -----NFVRSWIFHGNSLSQVS 280 (318)
Q Consensus 264 -----~~v~iwd~~~~~~~~~~ 280 (318)
..+.+||..+.+...+.
T Consensus 212 ~~~~~~~v~~yd~~~~~W~~~~ 233 (341)
T PLN02153 212 SDYESNAVQFFDPASGKWTEVE 233 (341)
T ss_pred cceecCceEEEEcCCCcEEecc
Confidence 46888998877666543
No 471
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=76.72 E-value=43 Score=27.95 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=83.4
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcceeeeeccccccccc------ceeeeeecccceeEEEEee
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQELQKSAEAHCVPFSL------LKEVVTVNTVPISVLSLIL 201 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~v~~l~~~~ 201 (318)
.+.++.+.+...... ..++-..++=+..+.|.++|+.+++..+.+..+..+-.. ...... ....+..++.+.
T Consensus 60 ~s~lndl~VD~~~~~-~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~-~~dg~~gial~~ 137 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGN-CDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQ-WPDGIFGIALSP 137 (287)
T ss_dssp CGGEEEEEEECTTTT-S-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEE-ETTSEEEEEE-T
T ss_pred ccccceEEEEccCCC-CcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEe-cCCCccccccCC
Confidence 456778877222110 011223344445578999999998776655443221110 111111 222366666650
Q ss_pred ccCCCCceEEEEEeCCCcEEEeeecc---CCCee-------eEeeeeecc-cCceeEEEEcCCCCEEEEecCCCcEEEEE
Q 021036 202 PVQSPRLMLLAVGKGSGSFDLWKCDI---SCNKF-------DKVGSYNAH-DQVVTGLAWAFDGCCLYSCSQDNFVRSWI 270 (318)
Q Consensus 202 ~~~~~~~~~l~~~~~dg~i~vw~~~~---~~~~~-------~~~~~~~~h-~~~v~~~~~~~~~~~l~s~~~d~~v~iwd 270 (318)
. .++++.|+-+.-.+. ++|.+.. +.... ..+..+ +. ......++++++|.++++--..+.|..|+
T Consensus 138 -~-~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~ 213 (287)
T PF03022_consen 138 -I-SPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWD 213 (287)
T ss_dssp -T-STTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEE
T ss_pred -C-CCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEe
Confidence 0 035566665554332 3332221 11110 011111 22 23556788999999888999999999999
Q ss_pred ecC----CceeeeecCCCCCCccccccCCCcceeeeEEEEcC--CCcEEE
Q 021036 271 FHG----NSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSP--GNLVVA 314 (318)
Q Consensus 271 ~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~ 314 (318)
..+ .....+...+. ....+.++++.+ +|.+-+
T Consensus 214 ~~~~~~~~~~~~l~~d~~------------~l~~pd~~~i~~~~~g~L~v 251 (287)
T PF03022_consen 214 PDGPYTPENFEILAQDPR------------TLQWPDGLKIDPEGDGYLWV 251 (287)
T ss_dssp TTTSB-GCCEEEEEE-CC-------------GSSEEEEEE-T--TS-EEE
T ss_pred CCCCcCccchheeEEcCc------------eeeccceeeeccccCceEEE
Confidence 876 23333333332 112667889998 665544
No 472
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.29 E-value=72 Score=30.31 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=29.5
Q ss_pred eeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 118 AVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 118 ~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
++++..+......+-.+.| +.+. .|++...||++.+|++...
T Consensus 73 G~lL~~~~w~~~~lI~mgW-------s~~e-eLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 73 GQLLGRILWKHGELIGMGW-------SDDE-ELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ccchHHHHhcCCCeeeecc-------cCCc-eEEEEeccceEEEeecchh
Confidence 3445555444457888999 5544 5677789999999998743
No 473
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=76.14 E-value=48 Score=28.23 Aligned_cols=128 Identities=13% Similarity=0.111 Sum_probs=73.9
Q ss_pred EEEEEeeeecCCCCCCCcEEEEEeCC------CcEEEEECCCcceeeeeccccccccccee--eeeecccceeEEEEeec
Q 021036 131 ITSISLAVLSSDSSNPQVLLVTGSSD------GSVRIWDGYIQELQKSAEAHCVPFSLLKE--VVTVNTVPISVLSLILP 202 (318)
Q Consensus 131 v~~~~~~p~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~~~~~ 202 (318)
.-+|++ .+++.++++.=.+ ..|.-++.. |+....+..... +..... .........-.|+++
T Consensus 87 ~Egi~~-------~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~-~~~~~~~~~~~~~N~G~E~la~~-- 155 (326)
T PF13449_consen 87 PEGIAV-------PPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA-FLPDANGTSGRRNNRGFEGLAVS-- 155 (326)
T ss_pred hhHeEE-------ecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccc-cccccCccccccCCCCeEEEEEC--
Confidence 346777 6778777777666 778888866 665554422111 000000 112345578899999
Q ss_pred cCCCCceEEEEEeC-----CC---------cEEEeeeccCC-Ce--eeEeeeeec-----ccCceeEEEEcCCCCEEEEe
Q 021036 203 VQSPRLMLLAVGKG-----SG---------SFDLWKCDISC-NK--FDKVGSYNA-----HDQVVTGLAWAFDGCCLYSC 260 (318)
Q Consensus 203 ~~~~~~~~l~~~~~-----dg---------~i~vw~~~~~~-~~--~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~ 260 (318)
|+|..|+++.. |+ .++++.++..+ +. .+....+.. ....|+.+.+-+++++|+--
T Consensus 156 ---~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 156 ---PDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred ---CCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 99986666542 22 16777667654 21 112223322 35678899999999866642
Q ss_pred c-----CCCcEEEEEec
Q 021036 261 S-----QDNFVRSWIFH 272 (318)
Q Consensus 261 ~-----~d~~v~iwd~~ 272 (318)
- ....++|+.+.
T Consensus 233 R~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 233 RDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccCCCCccceEEEEEEE
Confidence 2 34566666554
No 474
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=76.04 E-value=57 Score=31.56 Aligned_cols=30 Identities=10% Similarity=-0.043 Sum_probs=24.6
Q ss_pred CcEEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 147 QVLLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 147 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
+..|+.++.++.|.-.|..+|+.+..+...
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCC
Confidence 346777888999999999999998887654
No 475
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=75.36 E-value=51 Score=28.15 Aligned_cols=110 Identities=20% Similarity=0.138 Sum_probs=58.9
Q ss_pred CCCCcEEEEEe--CCCcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEE
Q 021036 144 SNPQVLLVTGS--SDGSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFD 221 (318)
Q Consensus 144 ~~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~ 221 (318)
+.++++++..- --..|.+-|+..++.+..+.... +.+.+- ....-|.+-|.||.+.
T Consensus 103 s~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-----------------C~~iyP-----~~~~~F~~lC~DGsl~ 160 (342)
T PF06433_consen 103 SADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-----------------CWLIYP-----SGNRGFSMLCGDGSLL 160 (342)
T ss_dssp -TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-----------------EEEEEE-----EETTEEEEEETTSCEE
T ss_pred ccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-----------------EEEEEe-----cCCCceEEEecCCceE
Confidence 56666666543 23567777777777666655332 122221 1124577778899998
Q ss_pred EeeeccCCCeeeEeee-eecccCce-eEEEEcCCCCEEEEecCCCcEEEEEecCCc
Q 021036 222 LWKCDISCNKFDKVGS-YNAHDQVV-TGLAWAFDGCCLYSCSQDNFVRSWIFHGNS 275 (318)
Q Consensus 222 vw~~~~~~~~~~~~~~-~~~h~~~v-~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~ 275 (318)
-..+|........... |..-..++ ..-++...+..++--+.+|.|+--|+....
T Consensus 161 ~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 161 TVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp EEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS
T ss_pred EEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc
Confidence 8877755543211111 11111222 233444445455557788888888876543
No 476
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=75.12 E-value=60 Score=28.80 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=25.1
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecC
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHG 273 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~ 273 (318)
..|.+++..+..+.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999975
No 477
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=74.11 E-value=9.5 Score=20.43 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=22.9
Q ss_pred EEEEEeCCCcEEEEECCCcceeeeeccc
Q 021036 149 LLVTGSSDGSVRIWDGYIQELQKSAEAH 176 (318)
Q Consensus 149 ~l~s~~~d~~v~iwd~~~~~~~~~~~~~ 176 (318)
.++.++.||.|.-.|.++|+.+..+...
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~ 29 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTG 29 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCC
Confidence 3566689999999999999998876643
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=73.52 E-value=69 Score=28.78 Aligned_cols=33 Identities=12% Similarity=-0.042 Sum_probs=25.3
Q ss_pred cccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCc
Q 021036 128 NSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQ 167 (318)
Q Consensus 128 ~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~ 167 (318)
-..-+.|+| .+++++|++--..|.|++++..++
T Consensus 29 L~~Pw~maf-------lPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 29 LNKPWALLW-------GPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCCceEEEE-------cCCCeEEEEEecCCEEEEEeCCCC
Confidence 345688999 889988877765799999986554
No 479
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.00 E-value=47 Score=26.22 Aligned_cols=21 Identities=14% Similarity=0.023 Sum_probs=16.0
Q ss_pred cceeeeEEEEcCCC-cEEEEEe
Q 021036 297 AFVSCLGMAVSPGN-LVVAMVQ 317 (318)
Q Consensus 297 h~~~v~~v~~sp~~-~~l~~~~ 317 (318)
|....+++++.|++ +++++|-
T Consensus 227 ~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 227 NDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ccccccceeecCcCCeEEEecC
Confidence 34577899999976 7888763
No 480
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=69.56 E-value=1.3e+02 Score=30.43 Aligned_cols=159 Identities=16% Similarity=0.172 Sum_probs=86.9
Q ss_pred ccEEEEec---------CCCcEEEEEccCCccccccccccCCceeEEeee-ccccccEEEEEeeeecCCCCCCCcEEEEE
Q 021036 84 FSILAVGG---------RSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLF-QAHNSWITSISLAVLSSDSSNPQVLLVTG 153 (318)
Q Consensus 84 ~~~l~~g~---------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~~~~~~~l~s~ 153 (318)
..+|++|. .-|.+.|+|+-.-- .+-++|.+..+....+ +...++|..++= -.|. |+++
T Consensus 1046 k~ylavGT~~~~gEDv~~RGr~hi~diIeVV---PepgkP~t~~KlKel~~eE~KGtVsavce--------V~G~-l~~~ 1113 (1366)
T KOG1896|consen 1046 KPYLAVGTAFIQGEDVPARGRIHIFDIIEVV---PEPGKPFTKNKLKELYIEEQKGTVSAVCE--------VRGH-LLSS 1113 (1366)
T ss_pred cceEEEEEeecccccccCcccEEEEEEEEec---CCCCCCcccceeeeeehhhcccceEEEEE--------eccE-EEEc
Confidence 35777763 35789999884300 0011122222222222 234577877764 4564 4433
Q ss_pred eCCCcEEEEECC-CcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCee
Q 021036 154 SSDGSVRIWDGY-IQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKF 232 (318)
Q Consensus 154 ~~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~ 232 (318)
....|.+|+++ .......-.. .-+++..... --.++++.|+--..|.+..+..+..+.
T Consensus 1114 -~GqKI~v~~l~r~~~ligVaFi---------------D~~~yv~s~~-----~vknlIl~gDV~ksisfl~fqeep~rl 1172 (1366)
T KOG1896|consen 1114 -QGQKIIVRKLDRDSELIGVAFI---------------DLPLYVHSMK-----VVKNLILAGDVMKSISFLGFQEEPYRL 1172 (1366)
T ss_pred -cCcEEEEEEeccCCcceeeEEe---------------ccceeEEehh-----hhhhheehhhhhhceEEEEEccCceEE
Confidence 34689999994 3333322110 1133333333 346788888877778877544333332
Q ss_pred eEeeeeecccCceeEEEEcCCCC--EEEEecCCCcEEEEEecCCce
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGC--CLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~v~iwd~~~~~~ 276 (318)
..+.+ ....-.++++.|--+|. .++++..|+.|++|-......
T Consensus 1173 sL~sr-d~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1173 SLLSR-DFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENI 1217 (1366)
T ss_pred EEeec-CCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCc
Confidence 11111 01223577888888776 678999999999997754433
No 481
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=69.17 E-value=83 Score=27.89 Aligned_cols=54 Identities=20% Similarity=0.312 Sum_probs=36.6
Q ss_pred cceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecc-cCceeEEEEcCCC
Q 021036 192 VPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAH-DQVVTGLAWAFDG 254 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~ 254 (318)
+++..+++| |+++++|.-..+|.+.+..-|.+. ...++.-. ......+.|.-+.
T Consensus 217 ~~i~~iavS-----png~~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVS-----PNGKFIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEEC-----CCCCEEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEECCC
Confidence 378999999 999999999999999888544443 22223222 2345667776544
No 482
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=68.72 E-value=1 Score=39.55 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=42.0
Q ss_pred cEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEEC
Q 021036 85 SILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDG 164 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~ 164 (318)
..++.+-..+.+.+|++.+.... .+..-..|.... +.| ++....++.+-..|.+.|++.
T Consensus 88 vlavlAek~~piylwd~n~eytq------------qLE~gg~~s~sl--l~w-------sKg~~el~ig~~~gn~viynh 146 (615)
T KOG2247|consen 88 VLAVLAEKTGPIYLWDVNSEYTQ------------QLESGGTSSKSL--LAW-------SKGTPELVIGNNAGNIVIYNH 146 (615)
T ss_pred hhhhhhhcCCCeeechhhhhhHH------------HHhccCcchHHH--Hhh-------ccCCccccccccccceEEEec
Confidence 45555677889999999864311 111111122222 678 777888888888899999998
Q ss_pred CCccee
Q 021036 165 YIQELQ 170 (318)
Q Consensus 165 ~~~~~~ 170 (318)
.+.+..
T Consensus 147 gtsR~i 152 (615)
T KOG2247|consen 147 GTSRRI 152 (615)
T ss_pred cchhhh
Confidence 765433
No 483
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=67.98 E-value=29 Score=29.61 Aligned_cols=75 Identities=15% Similarity=0.067 Sum_probs=41.3
Q ss_pred cceeEEEEeeccCCC--CceEEEEEeCCCcEEEeeeccCCCeeeEeeee-ecccCceeEEEEcCCCCEEEEecCCCcEE
Q 021036 192 VPISVLSLILPVQSP--RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY-NAHDQVVTGLAWAFDGCCLYSCSQDNFVR 267 (318)
Q Consensus 192 ~~v~~l~~~~~~~~~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~s~~~d~~v~ 267 (318)
..+..+.|.....-| .+.+|+..-..+.|....++... .......+ ......+..+++.|||.+.++...+|.|.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDG-SVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTE-EEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCC-CccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345556654111111 45667666666777766543222 22122222 23444789999999999888877888774
No 484
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=67.54 E-value=83 Score=27.28 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=25.3
Q ss_pred cCCCcEEEEEecCCceeeeecCCCCCCccccccCCCcceeeeEEEEcCCCcEEEEE
Q 021036 261 SQDNFVRSWIFHGNSLSQVSIPTNTPGLQSCTDLPDAFVSCLGMAVSPGNLVVAMV 316 (318)
Q Consensus 261 ~~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~~~ 316 (318)
..+|.+.-||..+.....+.-.- .-.++++.|||+.+++.+
T Consensus 196 ~~~GRl~~YD~~tK~~~VLld~L---------------~F~NGlaLS~d~sfvl~~ 236 (376)
T KOG1520|consen 196 DPTGRLFRYDPSTKVTKVLLDGL---------------YFPNGLALSPDGSFVLVA 236 (376)
T ss_pred CCccceEEecCcccchhhhhhcc---------------cccccccCCCCCCEEEEE
Confidence 34566777776654443222111 134789999999998876
No 485
>PLN02153 epithiospecifier protein
Probab=67.29 E-value=80 Score=27.00 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=30.9
Q ss_pred CcEEEeeeccCCCeeeEeeeeec---ccCceeEEEEcCCCCEEEEecCC--------------CcEEEEEecCCceeee
Q 021036 218 GSFDLWKCDISCNKFDKVGSYNA---HDQVVTGLAWAFDGCCLYSCSQD--------------NFVRSWIFHGNSLSQV 279 (318)
Q Consensus 218 g~i~vw~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~l~s~~~d--------------~~v~iwd~~~~~~~~~ 279 (318)
..+.+| |..+.++..+..... .......+. .++++++.|+.. ..+..+|+.+.....+
T Consensus 217 ~~v~~y--d~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~ 291 (341)
T PLN02153 217 NAVQFF--DPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKL 291 (341)
T ss_pred CceEEE--EcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCccccccccccccccEEEEEcCccEEEec
Confidence 346677 666777765543210 111111222 246677777752 2577888877665544
No 486
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=67.23 E-value=73 Score=26.54 Aligned_cols=93 Identities=15% Similarity=0.204 Sum_probs=52.5
Q ss_pred CcEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCCCceEEEEEe------CCCcEEEeeeccCCC
Q 021036 157 GSVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGK------GSGSFDLWKCDISCN 230 (318)
Q Consensus 157 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~------~dg~i~vw~~~~~~~ 230 (318)
..|++||..+.+-...-.. -.+.|+.|.|. .+.++++.|. ....+..| +..+.
T Consensus 16 ~~lC~yd~~~~qW~~~g~~--------------i~G~V~~l~~~-----~~~~Llv~G~ft~~~~~~~~la~y--d~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNG--------------ISGTVTDLQWA-----SNNQLLVGGNFTLNGTNSSNLATY--DFKNQ 74 (281)
T ss_pred CEEEEEECCCCEeecCCCC--------------ceEEEEEEEEe-----cCCEEEEEEeeEECCCCceeEEEE--ecCCC
Confidence 4689999876543322111 23478999997 6677777775 34456777 55566
Q ss_pred eeeEeee-e-ecccCceeEEEEcC-CC-CEEEEec-CCCc--EEEEE
Q 021036 231 KFDKVGS-Y-NAHDQVVTGLAWAF-DG-CCLYSCS-QDNF--VRSWI 270 (318)
Q Consensus 231 ~~~~~~~-~-~~h~~~v~~~~~~~-~~-~~l~s~~-~d~~--v~iwd 270 (318)
.+..+.. . ..-.++|..+.+.. ++ ++.+.|. .++. |..||
T Consensus 75 ~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d 121 (281)
T PF12768_consen 75 TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD 121 (281)
T ss_pred eeeecCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc
Confidence 6544332 1 12246787777643 33 3444443 4444 44453
No 487
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=67.08 E-value=1e+02 Score=28.05 Aligned_cols=34 Identities=9% Similarity=0.155 Sum_probs=23.0
Q ss_pred eeEEEEcC-CCCEEEEecCCCcEEEEEecCCceee
Q 021036 245 VTGLAWAF-DGCCLYSCSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 245 v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~ 278 (318)
+.++.+.+ ++.+|+++-.-..|...|.+++++.-
T Consensus 273 ~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~W 307 (477)
T PF05935_consen 273 INSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKW 307 (477)
T ss_dssp EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEE
T ss_pred cCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEE
Confidence 57888988 56677777666688888877776653
No 488
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=66.88 E-value=22 Score=21.67 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.4
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeee
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSY 238 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~ 238 (318)
..+.|+.-+.++.|+||.+|..+.+...+.++
T Consensus 28 ~~N~Fav~~e~~~iKIfkyd~~tNei~L~KE~ 59 (63)
T PF14157_consen 28 EHNHFAVVDEDGQIKIFKYDEDTNEITLKKEF 59 (63)
T ss_dssp STTEEEEE-ETTEEEEEEEETTTTEEEEEEEE
T ss_pred cCCEEEEEecCCeEEEEEeCCCCCeEEEEEee
Confidence 45677887889999999999888886665554
No 489
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=73 Score=31.95 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=23.2
Q ss_pred cCCCCEEEEecCCCcEEEEEecCCce
Q 021036 251 AFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 251 ~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
++++..++++-.||.+..||...+..
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 66788999999999999999988755
No 490
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=63.43 E-value=1.5e+02 Score=28.85 Aligned_cols=83 Identities=12% Similarity=0.159 Sum_probs=49.9
Q ss_pred ccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCC----CeeeEeeeeecc-------cCceeEEEEcCCCCEEEE
Q 021036 191 TVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISC----NKFDKVGSYNAH-------DQVVTGLAWAFDGCCLYS 259 (318)
Q Consensus 191 ~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~----~~~~~~~~~~~h-------~~~v~~~~~~~~~~~l~s 259 (318)
+.+..+++|+ |.+...||+.+..|...||++..+. ..+.......|+ ...-..+.|.++.+.|+.
T Consensus 145 g~~~aDv~Fn----P~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv 220 (765)
T PF10214_consen 145 GFPHADVAFN----PWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV 220 (765)
T ss_pred CCccceEEec----cCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE
Confidence 4466788888 3556799999999999999761111 111111111111 112236778877666666
Q ss_pred ecCCCcEEEEEecCCceee
Q 021036 260 CSQDNFVRSWIFHGNSLSQ 278 (318)
Q Consensus 260 ~~~d~~v~iwd~~~~~~~~ 278 (318)
++ ...+.++|+.+.....
T Consensus 221 ~~-r~~l~~~d~~~~~~~~ 238 (765)
T PF10214_consen 221 CN-RSKLMLIDFESNWQTE 238 (765)
T ss_pred Ec-CCceEEEECCCCCccc
Confidence 64 3567888888765543
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=63.24 E-value=19 Score=33.93 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=28.3
Q ss_pred CceeEEEEcCCCCEEEEecCCCcEEEEEecCCce
Q 021036 243 QVVTGLAWAFDGCCLYSCSQDNFVRSWIFHGNSL 276 (318)
Q Consensus 243 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 276 (318)
..++++.-+|.|..++.+..||.|++|+...+..
T Consensus 15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~q 48 (1636)
T KOG3616|consen 15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQ 48 (1636)
T ss_pred ceeeeeeecCCCceEEEEecCCcEEEEeecccch
Confidence 4567788889999999999999999999866444
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=63.23 E-value=1e+02 Score=26.91 Aligned_cols=159 Identities=10% Similarity=0.039 Sum_probs=84.2
Q ss_pred ccEEEEecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCc---EEEEEeCC---C
Q 021036 84 FSILAVGGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQV---LLVTGSSD---G 157 (318)
Q Consensus 84 ~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~---~l~s~~~d---~ 157 (318)
..+++...+++-+.+||++. +.++.+.. +..+-+..-- .-.-+|+ +++++.++ .
T Consensus 68 kSlIigTdK~~GL~VYdL~G---------------k~lq~~~~--Gr~NNVDvry---gf~l~g~~vDlavas~R~~g~n 127 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLDG---------------KELQSLPV--GRPNNVDVRY---GFPLNGKTVDLAVASDRSDGRN 127 (381)
T ss_dssp G-EEEEEETTTEEEEEETTS----------------EEEEE-S--S-EEEEEEEE---EEEETTEEEEEEEEEE-CCCT-
T ss_pred cceEEEEeCCCCEEEEcCCC---------------cEEEeecC--CCcceeeeec---ceecCCceEEEEEEecCcCCCC
Confidence 47888888889999999984 34444431 2333222200 0011222 23333333 4
Q ss_pred cEEEEECCCc-ceeeeecccccccccceeeeeecccceeEEEEeeccCCCCce-EEEEEeCCCcEEEeeeccC-CC--ee
Q 021036 158 SVRIWDGYIQ-ELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSPRLM-LLAVGKGSGSFDLWKCDIS-CN--KF 232 (318)
Q Consensus 158 ~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~-~l~~~~~dg~i~vw~~~~~-~~--~~ 232 (318)
+|++|.+... ..+..+.....++ ......++.+|+-. .+.+|. +++....+|.+..|.+... .+ ..
T Consensus 128 ~l~~f~id~~~g~L~~v~~~~~p~-------~~~~~e~yGlcly~--~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~ 198 (381)
T PF02333_consen 128 SLRLFRIDPDTGELTDVTDPAAPI-------ATDLSEPYGLCLYR--SPSTGALYAFVNGKDGRVEQYELTDDGDGKVSA 198 (381)
T ss_dssp EEEEEEEETTTTEEEE-CBTTC-E-------E-SSSSEEEEEEEE---TTT--EEEEEEETTSEEEEEEEEE-TTSSEEE
T ss_pred eEEEEEecCCCCcceEcCCCCccc-------ccccccceeeEEee--cCCCCcEEEEEecCCceEEEEEEEeCCCCcEee
Confidence 7999977631 1222222111110 11112456777641 123454 6666778999999876432 22 23
Q ss_pred eEeeeeecccCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 233 DKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 233 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
+.+++|.. ...+..+..+....+|..+-++.-|.-|+..
T Consensus 199 ~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 199 TLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred EEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecC
Confidence 46777764 3478888899888899999998877777765
No 493
>PRK10115 protease 2; Provisional
Probab=62.15 E-value=1.5e+02 Score=28.42 Aligned_cols=72 Identities=11% Similarity=-0.032 Sum_probs=41.3
Q ss_pred ccccccCCCCCccEEEEecC-----CCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCC
Q 021036 73 YPVPQNGSSNWFSILAVGGR-----SGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQ 147 (318)
Q Consensus 73 ~~v~~~~~s~~~~~l~~g~~-----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~ 147 (318)
..+....+|+++++|+.+.. .-.|++-|+.+++.+ ...+.+ . . ..++| .+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l-------------~~~i~~-~-~-~~~~w-------~~D~ 183 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY-------------PELLDN-V-E-PSFVW-------ANDS 183 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC-------------CccccC-c-c-eEEEE-------eeCC
Confidence 34555566666688777532 224778888775421 111111 1 1 45899 7777
Q ss_pred cEEEEEeCC------CcEEEEECCCc
Q 021036 148 VLLVTGSSD------GSVRIWDGYIQ 167 (318)
Q Consensus 148 ~~l~s~~~d------~~v~iwd~~~~ 167 (318)
+.|+....+ ..|..+++.++
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~ 209 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTP 209 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCC
Confidence 666555432 35777777766
No 494
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=61.75 E-value=1.7e+02 Score=28.81 Aligned_cols=28 Identities=11% Similarity=0.181 Sum_probs=21.2
Q ss_pred ccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECC
Q 021036 129 SWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGY 165 (318)
Q Consensus 129 ~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~ 165 (318)
-.|.|+.- ..+|+.+++|-.| +-+|.+.
T Consensus 182 inV~civs-------~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 182 INVRCIVS-------EEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred ceeEEEEe-------ccCCcEEEecCCC--CCeEEEE
Confidence 46778777 6689999998887 6677654
No 495
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=61.35 E-value=78 Score=30.45 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=49.7
Q ss_pred EEEEeeeecCCCCCCCcEEEEEeCCC-----cEEEEECCCcceeeeecccccccccceeeeeecccceeEEEEeeccCCC
Q 021036 132 TSISLAVLSSDSSNPQVLLVTGSSDG-----SVRIWDGYIQELQKSAEAHCVPFSLLKEVVTVNTVPISVLSLILPVQSP 206 (318)
Q Consensus 132 ~~~~~~p~~~~~~~~~~~l~s~~~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~ 206 (318)
..++| -|.|..++|-..|| .|.++.-+ |-....+... ......+..++|+ -
T Consensus 250 ~~LSW-------kpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr-----------~~~dEk~~~~~wn-----~ 305 (1243)
T COG5290 250 HQLSW-------KPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLR-----------VGCDEKAFLENWN-----L 305 (1243)
T ss_pred hcccc-------ccCCceeeeeccCCCCCcceEEEEccC-CcccCCcccc-----------CCchhhhhhhhhh-----H
Confidence 45889 88999999987555 34444422 2111111100 1112244555665 3
Q ss_pred CceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCC
Q 021036 207 RLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGC 255 (318)
Q Consensus 207 ~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 255 (318)
....++.+ ..+.+.+| -..+-.|....+. .-..+.-+.|+|...
T Consensus 306 ~s~vlav~-~~n~~~lw--ttkNyhWYLK~e~--~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 306 LSTVLAVA-EGNLLKLW--TTKNYHWYLKVER--QIPGISYVKWHPEEK 349 (1243)
T ss_pred HHHHHHHh-hcceEEEE--EccceEEEEEEee--cCCCcceeeeccccC
Confidence 44444443 36678999 4445444332222 234566789999643
No 496
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=60.85 E-value=82 Score=24.94 Aligned_cols=138 Identities=15% Similarity=0.117 Sum_probs=64.8
Q ss_pred ecCCCcEEEEEccCCccccccccccCCceeEEeeeccccccEEEEEeeeecCCCCCCCcEEEEEeCCCcEEEEECCCcce
Q 021036 90 GGRSGKVSLWRICVPKCYSVEDCKVPTTAVLIGLFQAHNSWITSISLAVLSSDSSNPQVLLVTGSSDGSVRIWDGYIQEL 169 (318)
Q Consensus 90 g~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~ 169 (318)
.-.+|.-.++|.++-++ +..+. ..+.=+.++. +++.|+.+....+++.-|..+...
T Consensus 107 Tw~egvaf~~d~~t~~~--------------lg~~~-y~GeGWgLt~---------d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 107 TWKEGVAFKYDADTLEE--------------LGRFS-YEGEGWGLTS---------DDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred EeccceeEEEChHHhhh--------------hcccc-cCCcceeeec---------CCcceEeeCCceEEEecCHHHhhh
Confidence 45688888888887443 22222 2334466655 444577766666788777765544
Q ss_pred eeeeccc--ccccccceeeeeecccceeEEEEeeccCCCCceEEEEEeCCCcEEEeeeccCCCeeeEeeeeecccCceeE
Q 021036 170 QKSAEAH--CVPFSLLKEVVTVNTVPISVLSLILPVQSPRLMLLAVGKGSGSFDLWKCDISCNKFDKVGSYNAHDQVVTG 247 (318)
Q Consensus 170 ~~~~~~~--~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~h~~~v~~ 247 (318)
..++... ..|+..+.++... ++.++.=.|- +...+-.--..|.|.-| +|+..-.. .+..-..+..-...
T Consensus 163 ~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~------t~~I~rI~p~sGrV~~w-idlS~L~~-~~~~~~~~~nvlNG 233 (262)
T COG3823 163 LDTVQVTDDGVPVSKLNELEWV-DGELYANVWQ------TTRIARIDPDSGRVVAW-IDLSGLLK-ELNLDKSNDNVLNG 233 (262)
T ss_pred cceEEEEECCeecccccceeee-ccEEEEeeee------ecceEEEcCCCCcEEEE-EEccCCch-hcCccccccccccc
Confidence 4333221 1222221111111 1112222221 12222222234555555 24333221 11122335556788
Q ss_pred EEEcCCC-CEEEEe
Q 021036 248 LAWAFDG-CCLYSC 260 (318)
Q Consensus 248 ~~~~~~~-~~l~s~ 260 (318)
+++.|++ +++++|
T Consensus 234 IA~~~~~~r~~iTG 247 (262)
T COG3823 234 IAHDPQQDRFLITG 247 (262)
T ss_pred eeecCcCCeEEEec
Confidence 9999986 556665
No 497
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=60.81 E-value=1.4e+02 Score=27.55 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=14.6
Q ss_pred ceeeeEEEEcCCCcEEEE
Q 021036 298 FVSCLGMAVSPGNLVVAM 315 (318)
Q Consensus 298 ~~~v~~v~~sp~~~~l~~ 315 (318)
...+++++|+||++.|..
T Consensus 501 gaE~tG~~fspDg~tlFv 518 (524)
T PF05787_consen 501 GAEITGPCFSPDGRTLFV 518 (524)
T ss_pred CcccccceECCCCCEEEE
Confidence 347899999999987654
No 498
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=59.87 E-value=1.1e+02 Score=25.95 Aligned_cols=71 Identities=10% Similarity=0.047 Sum_probs=39.9
Q ss_pred CceEEEEEeCC-----CcEEEeeeccCCCeeeEeeeeecccCceeEEEEcCCCCEEEEecCCC----cEEEEEecCCcee
Q 021036 207 RLMLLAVGKGS-----GSFDLWKCDISCNKFDKVGSYNAHDQVVTGLAWAFDGCCLYSCSQDN----FVRSWIFHGNSLS 277 (318)
Q Consensus 207 ~~~~l~~~~~d-----g~i~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~----~v~iwd~~~~~~~ 277 (318)
++.+++.|+.. ..+..| |..+.+|..+..+.... .....+...++++.+.|+.++ .+..||..+....
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLF--NLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEE--cCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 56777777642 235555 77787776665443211 111222233566777777654 3567888876665
Q ss_pred eee
Q 021036 278 QVS 280 (318)
Q Consensus 278 ~~~ 280 (318)
.+.
T Consensus 200 ~~~ 202 (323)
T TIGR03548 200 KVA 202 (323)
T ss_pred ECC
Confidence 443
No 499
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=59.75 E-value=73 Score=31.05 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=22.5
Q ss_pred cCceeEEEEcCCCCEEEEecCCCcEEEEEec
Q 021036 242 DQVVTGLAWAFDGCCLYSCSQDNFVRSWIFH 272 (318)
Q Consensus 242 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 272 (318)
.-.|.++.-+.+|+.+++|..| +.+|.+.
T Consensus 181 GinV~civs~e~GrIFf~g~~d--~nvyEl~ 209 (1263)
T COG5308 181 GINVRCIVSEEDGRIFFGGEND--PNVYELV 209 (1263)
T ss_pred CceeEEEEeccCCcEEEecCCC--CCeEEEE
Confidence 3467788777789988888777 7788774
No 500
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=59.21 E-value=13 Score=18.43 Aligned_cols=16 Identities=25% Similarity=0.430 Sum_probs=13.3
Q ss_pred cEEEEecCCCcEEEEE
Q 021036 85 SILAVGGRSGKVSLWR 100 (318)
Q Consensus 85 ~~l~~g~~dg~i~iw~ 100 (318)
++++++...+.+|||.
T Consensus 12 ~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 12 SWVAVATSAGYLRIFS 27 (27)
T ss_pred CEEEEEeCCCeEEecC
Confidence 6888888889999873
Done!