BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021037
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 94/153 (61%), Gaps = 8/153 (5%)
Query: 153 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 208
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y YR + TD +
Sbjct: 5 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGN--TDNKEYA 62
Query: 209 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD--NVSPSTIYGAEHLLRLFVKLPEL 266
+ E++ GI+ YF+ L LLYK ER QY +++ D + S +YGA HLLRLFV++ +
Sbjct: 63 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 122
Query: 267 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 299
LAY +++++L L + DFLK++ KN +T F
Sbjct: 123 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 155
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 8/153 (5%)
Query: 153 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 208
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y Y+ + TD +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 209 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD--NVSPSTIYGAEHLLRLFVKLPEL 266
+ E++ GI+ YF+ L LLYK ER QY +++ D + S +YGA HLLRLFV++ +
Sbjct: 64 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 267 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 299
LAY +++++L L + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/153 (41%), Positives = 94/153 (61%), Gaps = 8/153 (5%)
Query: 153 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 208
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y Y+ + TD +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 209 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD--NVSPSTIYGAEHLLRLFVKLPEL 266
+ E++ GI+ YF+ L LLYK ER QY +++ D + S +YGA HLLRLFV++ +
Sbjct: 64 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 267 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 299
LAY +++++L L + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 39/196 (19%)
Query: 150 EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------R 198
E+ + I+IP LKKQL DD ++N++ +LVKLP N+ IL Y+++ R
Sbjct: 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 199 SKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY------ 237
+ +M D E++ G+R FD LP++LLY E+ QY
Sbjct: 65 PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 238 -HDLVVDN-----VSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFM 291
+D+ PS IYGA+HLLRLFVKLPE+L ++ ++ L L + FL+F+
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 292 QKNQSTFFL-SAYDGS 306
+ FF SAY +
Sbjct: 185 AEYHDDFFPESAYVAA 200
>pdb|2EFI|A Chain A, Solution Structure Of The Chromo Domain Of Mortality
Factor 4-Like Protein 1 From Human
Length = 100
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 28 FSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87
F EGERVL +HGP +YEAK K ++ K+ +Y++HY GWNKNWDEWV R+LK+ + N+
Sbjct: 18 FQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNL 77
Query: 88 MKQQALQK 95
KQ+ LQK
Sbjct: 78 QKQRELQK 85
>pdb|2F5K|A Chain A, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|B Chain B, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|C Chain C, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|D Chain D, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|E Chain E, Crystal Structure Of The Chromo Domain Of Human Mrg15
pdb|2F5K|F Chain F, Crystal Structure Of The Chromo Domain Of Human Mrg15
Length = 102
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%)
Query: 28 FSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87
F EGERVL +HGP +YEAK K ++ K+ +Y++HY GWNKNWDEWV R+LK+ + N+
Sbjct: 23 FQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNL 82
Query: 88 MKQQALQK 95
KQ+ LQK
Sbjct: 83 QKQRELQK 90
>pdb|2LRQ|A Chain A, Chemical Shift Assignment And Solution Structure Of
Fr822a From Drosophila Melanogaster. Northeast
Structural Genomics Consortium Target Fr822a
Length = 85
Score = 87.4 bits (215), Expect = 9e-18, Method: Composition-based stats.
Identities = 38/74 (51%), Positives = 54/74 (72%)
Query: 25 SSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84
++LF +GERVL +HGP IYEAKV K + YY+HY GW+KNWDEWV +R+LK+ +
Sbjct: 10 NTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYND 69
Query: 85 ENVMKQQALQKKQG 98
+NV ++Q L ++ G
Sbjct: 70 DNVKRRQELARQCG 83
>pdb|2K3Y|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain Bound To
Histone H3 With A Dimethyllysine Analog H3k36me2
Length = 136
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 38/116 (32%)
Query: 28 FSEGERVLAYHGPCIYEAKVQKA------------------------ELRKKEW------ 57
F+ G RVLA+HGP +YEAK+ K E++ ++
Sbjct: 10 FALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESI 69
Query: 58 --------RYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKS 105
+++HY GW +WDEWVG DR+ + EEN+ ++ L + G+ S+ +
Sbjct: 70 PEEIINGKSFFIHYQGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAGSTGSAPA 125
>pdb|3E9G|A Chain A, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
pdb|3E9G|B Chain B, Crystal Structure Long-Form (Residue1-124) Of Eaf3 Chromo
Domain
Length = 130
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 39/114 (34%)
Query: 28 FSEGERVLAYHGPCIYEAKVQK-------------------AELRKKEWR---------- 58
F+ G R LA+HGP +YEAK+ K + KE +
Sbjct: 8 FALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESI 67
Query: 59 ---------YYVHYLGWNKNWDEWVGVDRLLKHTEENV-MKQQALQKKQGADRS 102
+++HY GW +WDEWVG DR+ + EEN+ MK++ + + A +S
Sbjct: 68 PEEIINGKCFFIHYQGWKSSWDEWVGYDRIRAYNEENIAMKKRLANEAKEAKKS 121
>pdb|2K3X|A Chain A, Solution Structure Of Eaf3 Chromo Barrel Domain
pdb|3E9F|A Chain A, Crystal Structure Short-Form (Residue1-113) Of Eaf3 Chromo
Domain
Length = 121
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 38/104 (36%)
Query: 28 FSEGERVLAYHGPCIYEAKVQK-------------------AELRKKEWR---------- 58
F+ G R LA+HGP +YEAK+ K + KE +
Sbjct: 8 FALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESI 67
Query: 59 ---------YYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQAL 93
+++HY GW +WDEWVG DR+ + EEN+ ++ L
Sbjct: 68 PEEIINGKCFFIHYQGWKSSWDEWVGYDRIRAYNEENIAMKKRL 111
>pdb|3OA6|A Chain A, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
pdb|3OA6|B Chain B, Human Msl3 Chromodomain Bound To Dna And H4k20me1 Peptide
Length = 110
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 47/90 (52%), Gaps = 11/90 (12%)
Query: 28 FSEGERVLAYH-----GPCIYEAK-----VQKAELRKKEWRYYVHYLGWNKNWDEWVGVD 77
F GE+VL + +Y+AK V K E +K Y +H+ GWN++WD W D
Sbjct: 20 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAED 79
Query: 78 RLLKHTEENVMKQQALQKKQGADRSSKSGR 107
+L+ T+EN Q+ L +K A R +GR
Sbjct: 80 HVLRDTDENRRLQRKLARKAVA-RLRSTGR 108
>pdb|3OB9|A Chain A, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|B Chain B, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|C Chain C, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|D Chain D, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
pdb|3OB9|E Chain E, Structure Of The Human Msl3 Chromo-Barrel Domain At 2.5
Angstrom Resolution
Length = 97
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 28 FSEGERVLAYH-----GPCIYEAK-----VQKAELRKKEWRYYVHYLGWNKNWDEWVGVD 77
F GE+VL + +Y+AK V K E +K Y +H+ GWN++WD W D
Sbjct: 15 FHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAED 74
Query: 78 RLLKHTEENVMKQQALQKKQGA 99
+L+ T+EN Q+ L +K A
Sbjct: 75 HVLRDTDENRRLQRKLARKAVA 96
>pdb|2LCC|A Chain A, Solution Structure Of Rbbp1 Chromobarrel Domain
Length = 76
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 42 IYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80
IYEA ++ E+ E Y VHY GWN +DEWV DR++
Sbjct: 24 IYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRII 62
>pdb|3M9Q|A Chain A, Drosophila Msl3 Chromodomain
pdb|3M9Q|B Chain B, Drosophila Msl3 Chromodomain
Length = 101
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 10/79 (12%)
Query: 25 SSLFSEGERVLAYH-----GPCIYEAKVQKAELRKKE-----WRYYVHYLGWNKNWDEWV 74
+ LF +GE VL Y +Y +KV R+ E + Y +H+ GW ++D V
Sbjct: 17 TPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAV 76
Query: 75 GVDRLLKHTEENVMKQQAL 93
LLK TEEN Q+ L
Sbjct: 77 RATVLLKDTEENRQLQREL 95
>pdb|1WGS|A Chain A, Solution Structure Of The Tudor Domain From Mouse
Hypothetical Protein Homologous To Histone
Acetyltransferase
Length = 133
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 36 AYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79
+H + +++V E R++ +YVHY+G+N+ DEWV +RL
Sbjct: 27 TWHSAEVIQSRVNDQEGREE---FYVHYVGFNRRLDEWVDKNRL 67
>pdb|2RO0|A Chain A, Solution Structure Of The Knotted Tudor Domain Of The
Yeast Histone Acetyltransferase, Esa1
Length = 92
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 AKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79
A++ RK ++YVHY+ +NK DEW+ DR+
Sbjct: 41 AEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 75
>pdb|2RNZ|A Chain A, Solution Structure Of The Presumed Chromodomain Of The
Yeast Histone Acetyltransferase, Esa1
Length = 94
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 45 AKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79
A++ RK ++YVHY+ +NK DEW+ DR+
Sbjct: 43 AEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRI 77
>pdb|2BUD|A Chain A, The Solution Structure Of The Chromo Barrel Domain From
The Males-Absent On The First (Mof) Protein
Length = 92
Score = 32.7 bits (73), Expect = 0.27, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 59 YYVHYLGWNKNWDEWVGVDRLLKHTEE 85
YYVHY+G N+ D WVG R+ + ++
Sbjct: 50 YYVHYVGLNRRLDGWVGRHRISDNADD 76
>pdb|2EKO|A Chain A, Solution Structure Of Ruh-073, A Pseudo Chromo Domain
From Human Cdna
Length = 87
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 59 YYVHYLGWNKNWDEWVGVDRL 79
+YVHY+ +N+ DEWV +RL
Sbjct: 46 FYVHYIDFNRRLDEWVTHERL 66
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 71 DEWVGVDRLLKHTEENVMKQQALQKKQGADRSSKSGRSAQTKQKSSTDVKVEKE--DIKS 128
D +V VD L+ E L+ +GA + + GR+ QT+ ST +E+ D+
Sbjct: 103 DRYVAVDTLVLALAEATPGLPGLEALKGALKELRGGRTVQTEHAESTYNALEQYGIDLTR 162
Query: 129 YVAKGK 134
A+GK
Sbjct: 163 LAAEGK 168
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 60 YVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQKKQG 98
+V LG +N+DE GVD++++H + V +Q ++K+
Sbjct: 157 FVDALG--RNYDEKTGVDKIVEHVKSYVPAEQRAKQKEA 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,910,557
Number of Sequences: 62578
Number of extensions: 370986
Number of successful extensions: 778
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 43
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)