Query 021037
Match_columns 318
No_of_seqs 167 out of 586
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 07:07:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021037.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021037hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05712 MRG: MRG; InterPro: 100.0 3.1E-46 6.8E-51 334.5 12.9 156 148-303 19-194 (194)
2 KOG3001 Dosage compensation re 100.0 5.6E-44 1.2E-48 347.4 11.3 291 26-316 6-390 (391)
3 PF11717 Tudor-knot: RNA bindi 99.8 2.4E-21 5.2E-26 139.9 7.0 53 28-80 1-54 (55)
4 PLN00104 MYST -like histone ac 99.5 3.3E-14 7.2E-19 140.3 7.5 56 26-81 52-113 (450)
5 smart00333 TUDOR Tudor domain. 97.7 7.2E-05 1.6E-09 53.3 5.4 51 27-82 2-53 (57)
6 smart00561 MBT Present in Dros 97.7 0.00015 3.2E-09 58.2 7.2 55 24-82 24-83 (96)
7 COG5027 SAS2 Histone acetyltra 97.7 1.9E-05 4.2E-10 75.8 2.3 54 30-83 8-61 (395)
8 smart00743 Agenet Tudor-like d 97.4 0.00054 1.2E-08 49.7 6.0 52 27-81 2-55 (61)
9 cd00024 CHROMO Chromatin organ 97.3 0.0002 4.4E-09 50.4 3.3 38 45-82 6-45 (55)
10 smart00298 CHROMO Chromatin or 97.3 0.00021 4.6E-09 50.2 2.9 37 45-81 5-42 (55)
11 PTZ00064 histone acetyltransfe 97.2 0.00011 2.4E-09 73.8 1.4 27 55-81 147-173 (552)
12 PF05641 Agenet: Agenet domain 96.9 0.0026 5.7E-08 47.5 5.7 54 28-84 1-65 (68)
13 cd04508 TUDOR Tudor domains ar 96.8 0.0032 7E-08 43.2 4.9 45 31-80 1-47 (48)
14 PF06003 SMN: Survival motor n 96.6 0.0044 9.6E-08 58.4 6.4 57 25-85 66-124 (264)
15 cd05162 PWWP The PWWP domain, 96.1 0.012 2.5E-07 45.9 5.3 58 28-87 1-66 (87)
16 PLN03239 histone acetyltransfe 95.9 0.0025 5.4E-08 61.9 0.5 22 59-80 1-22 (351)
17 KOG2748 Uncharacterized conser 95.8 0.0024 5.3E-08 61.5 -0.2 43 41-83 9-52 (369)
18 PF09465 LBR_tudor: Lamin-B re 95.7 0.035 7.6E-07 39.9 5.8 38 26-65 4-43 (55)
19 PF00855 PWWP: PWWP domain; I 95.5 0.033 7.1E-07 42.7 5.4 57 28-87 1-62 (86)
20 PF00385 Chromo: Chromo (CHRro 95.2 0.049 1.1E-06 38.4 5.0 38 45-82 4-44 (55)
21 cd05834 HDGF_related The PWWP 95.0 0.037 8E-07 43.1 4.4 57 27-85 2-60 (83)
22 cd05837 MSH6_like The PWWP dom 94.7 0.05 1.1E-06 44.6 4.4 60 26-86 1-71 (110)
23 smart00293 PWWP domain with co 93.7 0.13 2.9E-06 37.7 4.6 54 28-83 1-63 (63)
24 PF02820 MBT: mbt repeat; Int 93.6 0.24 5.2E-06 37.4 5.9 39 40-82 12-52 (73)
25 PF07039 DUF1325: SGF29 tudor- 89.9 0.57 1.2E-05 39.6 4.8 47 21-68 65-113 (130)
26 cd05840 SPBC215_ISWI_like The 89.7 0.78 1.7E-05 36.5 5.1 59 28-88 1-70 (93)
27 cd05835 Dnmt3b_related The PWW 88.7 0.56 1.2E-05 36.7 3.6 55 28-84 1-60 (87)
28 cd05836 N_Pac_NP60 The PWWP do 86.2 1.9 4E-05 33.8 5.2 56 28-85 1-62 (86)
29 cd05838 WHSC1_related The PWWP 83.5 2.3 5E-05 33.8 4.7 55 29-85 2-65 (95)
30 cd06080 MUM1_like Mutated mela 82.9 6.2 0.00013 30.6 6.7 53 28-83 1-54 (80)
31 PF15057 DUF4537: Domain of un 78.5 5.5 0.00012 33.3 5.6 61 25-88 53-118 (124)
32 PHA02763 hypothetical protein; 74.5 0.33 7.1E-06 38.2 -2.7 54 26-80 26-80 (102)
33 KOG4327 mRNA splicing protein 73.1 2.4 5.3E-05 38.3 2.1 43 26-70 66-110 (218)
34 cd05841 BS69_related The PWWP 71.9 7.8 0.00017 30.3 4.5 55 26-85 5-60 (83)
35 cd04402 RhoGAP_ARHGAP20 RhoGAP 69.9 44 0.00096 29.5 9.6 141 156-302 14-191 (192)
36 PF08940 DUF1918: Domain of un 69.7 7 0.00015 28.5 3.5 38 28-65 3-43 (58)
37 PF15057 DUF4537: Domain of un 68.0 11 0.00023 31.5 4.8 47 31-83 1-49 (124)
38 cd05839 BR140_related The PWWP 63.8 9.5 0.00021 31.4 3.6 60 28-88 1-84 (111)
39 cd04404 RhoGAP-p50rhoGAP RhoGA 62.9 95 0.0021 27.4 10.3 137 156-299 22-195 (195)
40 KOG2747 Histone acetyltransfer 62.1 1.8 4E-05 43.0 -1.0 35 41-75 34-69 (396)
41 KOG3766 Polycomb group protein 61.7 18 0.0004 37.0 6.0 51 25-78 198-252 (478)
42 PF00567 TUDOR: Tudor domain; 58.1 26 0.00055 27.3 5.2 54 25-83 49-104 (121)
43 KOG3038 Histone acetyltransfer 54.1 20 0.00043 33.8 4.4 41 24-64 195-237 (264)
44 KOG3026 Splicing factor SPF30 39.8 43 0.00093 31.3 4.2 29 27-55 90-120 (262)
45 KOG3001 Dosage compensation re 39.7 6.1 0.00013 39.5 -1.4 66 23-88 43-142 (391)
46 PF12148 DUF3590: Protein of u 38.7 80 0.0017 24.8 5.0 35 34-68 2-42 (85)
47 PF10781 DSRB: Dextransucrase 38.1 80 0.0017 23.0 4.5 39 29-67 2-41 (62)
48 PRK10708 hypothetical protein; 37.8 85 0.0018 22.9 4.5 39 29-67 2-41 (62)
49 cd04390 RhoGAP_ARHGAP22_24_25 33.7 3.3E+02 0.0072 24.0 11.4 19 281-299 181-199 (199)
50 PF11390 FdsD: NADH-dependant 33.7 59 0.0013 23.9 3.3 33 255-287 1-33 (61)
51 KOG3766 Polycomb group protein 33.1 42 0.0009 34.5 3.3 49 25-77 305-356 (478)
52 KOG4645 MAPKKK (MAP kinase kin 33.0 2.6E+02 0.0057 32.6 9.5 63 177-239 607-694 (1509)
53 smart00739 KOW KOW (Kyprides, 32.2 92 0.002 18.0 3.6 25 27-51 1-26 (28)
54 PF13495 Phage_int_SAM_4: Phag 31.4 83 0.0018 23.2 4.0 45 181-226 37-81 (85)
55 PF04319 NifZ: NifZ domain; I 30.4 76 0.0016 24.4 3.6 14 25-38 2-15 (75)
56 cd04716 BAH_plantDCM_I BAH, or 30.3 83 0.0018 26.2 4.1 32 27-58 3-36 (122)
57 PRK00236 xerC site-specific ty 29.4 4.1E+02 0.0088 23.6 9.2 24 271-294 69-92 (297)
58 PF05372 Delta_lysin: Delta ly 28.9 84 0.0018 18.8 2.7 21 278-298 3-23 (25)
59 TIGR00922 nusG transcription t 28.7 1.7E+02 0.0037 25.1 6.1 40 26-65 118-158 (172)
60 smart00439 BAH Bromo adjacent 28.6 1.4E+02 0.0031 23.4 5.3 30 27-56 1-33 (120)
61 COG3458 Acetyl esterase (deace 28.3 1E+02 0.0022 29.8 4.7 44 32-75 52-101 (321)
62 cd04386 RhoGAP_nadrin RhoGAP_n 28.2 4.2E+02 0.0092 23.4 10.9 57 246-302 125-202 (203)
63 PRK14752 delta-hemolysin; Prov 27.7 63 0.0014 21.6 2.3 37 256-298 5-41 (44)
64 cd04714 BAH_BAHCC1 BAH, or Bro 26.6 1E+02 0.0022 25.3 4.1 29 27-55 3-34 (121)
65 PF07154 DUF1392: Protein of u 26.1 1.5E+02 0.0032 25.7 4.9 37 25-61 85-122 (150)
66 KOG2039 Transcriptional coacti 26.1 1.3E+02 0.0028 33.4 5.8 55 26-85 694-750 (875)
67 PRK05609 nusG transcription an 24.6 2.4E+02 0.0051 24.3 6.3 40 26-65 125-165 (181)
68 cd04375 RhoGAP_DLC1 RhoGAP_DLC 24.4 5.3E+02 0.012 23.3 10.9 17 284-300 199-215 (220)
69 PF15136 UPF0449: Uncharacteri 23.7 62 0.0013 26.1 2.1 21 178-198 7-27 (97)
70 KOG1904 Transcription coactiva 23.5 73 0.0016 32.9 3.1 62 23-86 8-73 (496)
71 cd04715 BAH_Orc1p_like BAH, or 23.0 1.7E+02 0.0037 25.4 5.0 30 25-54 27-57 (159)
72 PF02559 CarD_CdnL_TRCF: CarD- 21.8 1.3E+02 0.0029 23.3 3.7 50 27-79 1-51 (98)
73 PF10377 ATG11: Autophagy-rela 20.9 2.1E+02 0.0045 24.0 4.9 45 25-75 40-93 (129)
No 1
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=100.00 E-value=3.1e-46 Score=334.48 Aligned_cols=156 Identities=49% Similarity=0.818 Sum_probs=126.9
Q ss_pred cccceEEEecChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCC-c-c-----hhhHHHHHHHHHHHH
Q 021037 148 SVEKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDG-M-M-----TDSIGEILKGIRCYF 220 (318)
Q Consensus 148 ~~~~~~~i~iP~~Lk~iLvdD~~~i~~~~~L~~LPa~~tV~~IL~~y~~~~~~~~~-~-~-----~~~~~e~~~gl~~yF 220 (318)
...+++.|+||..|+.+|||||++|+++++|++|||++||++||++|+++...... . . ...++|+++||++||
T Consensus 19 ~~~~~~~i~lP~~Lk~~LvdD~~~I~~~~~l~~LP~~~~V~~IL~~y~~~~~~~~~~~~~~~~~~~~~~~e~~~Gl~~yF 98 (194)
T PF05712_consen 19 EEEPEIKIELPEELKKILVDDWELITKEKKLVKLPAKPSVDDILEDYVESFADSDDSEEESAEQERDLLKEVADGLRDYF 98 (194)
T ss_dssp -----------HHHHHHHHHHHHHHHTS-EEE-SS-SSBHHHHHHHHHHHHHHCHCSS---THH--HHHHHHHHHHHHHH
T ss_pred ccCceEEEECCHHHHHHHHHHHHHHHcCCceeeCCCCCCHHHHHHHHHHHHhhcccCcchhHHHHHHHHHHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999999999974321 1 1 146899999999999
Q ss_pred HhhcCcccCChhhHhhHhHhhcC------------CCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHH
Q 021037 221 DKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFL 288 (318)
Q Consensus 221 n~~L~~~LLY~~ER~QY~~~~~~------------~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l~~~l~~fL 288 (318)
|++||++|||++||+||.+++.. +.+||++||++||||||++||+||+.++|++++++.|+.++++||
T Consensus 99 n~~L~~~LLY~~Er~Qy~~~~~~~~~~~~~~~~~~~~~ps~~YG~~HLLRL~vkLPell~~~~~~~~~~~~l~~~l~~fl 178 (194)
T PF05712_consen 99 NKALGSQLLYKFERPQYDELLKKHATRDDSPPDEPGFRPSDIYGAIHLLRLFVKLPELLSSTNMDEESINILLEHLQDFL 178 (194)
T ss_dssp HHHCCCCTS-GGGHHHHHHHHHHS---------STTS-HHHC-BHHHHHHHHHHHHHHHCCCGGCHHHHHHHHHHHHHHH
T ss_pred HHHhccccCcHHHHHHHHHHHHhcccchhccccCCCCCHHhhccHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999864 349999999999999999999999999999999999999999999
Q ss_pred HHHHHchhcccc-cCC
Q 021037 289 KFMQKNQSTFFL-SAY 303 (318)
Q Consensus 289 ~fL~~n~~~~f~-~dY 303 (318)
+||++|.+.||. ++|
T Consensus 179 ~fL~~n~~~~f~~~~y 194 (194)
T PF05712_consen 179 KFLEKNSEEYFSEEDY 194 (194)
T ss_dssp HHHHHTHHHHS-GGGE
T ss_pred HHHHHHHHHhCCcccC
Confidence 999999999999 666
No 2
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.6e-44 Score=347.40 Aligned_cols=291 Identities=35% Similarity=0.520 Sum_probs=220.0
Q ss_pred CCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHHHH----------
Q 021037 26 SLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQK---------- 95 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L~~---------- 95 (318)
..|..||+|+|+|++..|+|+|++.........|++||.||+..|||||+..+.++.+++|+..++.+..
T Consensus 6 ~~~~~~e~~~~~~~~~~~eak~~k~~~~~~~~~~~i~~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~ 85 (391)
T KOG3001|consen 6 IEVLSNERVLCFHGPLMEEAKIVKKEIGDKSSKYKIHRSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDED 85 (391)
T ss_pred ccccccceeeecccchhhhhhhhhhccccCcccccccccccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccc
Confidence 4588999999999999999999999999999999999999999999999999999999999999998883
Q ss_pred -----hhcc------ccC---CCCCC------------Ccccc--------------cC-------------C--CCC--
Q 021037 96 -----KQGA------DRS---SKSGR------------SAQTK--------------QK-------------S--STD-- 118 (318)
Q Consensus 96 -----~~~~------~k~---~k~~~------------~~~~~--------------~~-------------~--~~~-- 118 (318)
+.+. .+. .++.+ ....+ .+ . .+.
T Consensus 86 ~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~~~~s~~~~~k~~~~~~~~ 165 (391)
T KOG3001|consen 86 ETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEEKIPVGKNVDRIKEGVDGQRKEKSNSGPPSLQGTRKSKQEKPST 165 (391)
T ss_pred cccccchhhHHHHHHhhccCccccccccccccccccccccccccccccccCccccccccCCCCCceeeeccccccccccc
Confidence 0000 000 00000 00000 00 0 000
Q ss_pred ccccccc-------c-----ccccccCCccCCCC-------CCc-cccccccceEEEecChhHHHHHHHHHHHhhhCCce
Q 021037 119 VKVEKED-------I-----KSYVAKGKKRKSDS-------GTE-KDNVSVEKLVKIQIPSTLKKQLVDDWEFVNQQDKL 178 (318)
Q Consensus 119 ~~~~~~~-------~-----~~~~~~~~k~~~~~-------~~e-~~~~~~~~~~~i~iP~~Lk~iLvdD~~~i~~~~~L 178 (318)
+....++ . ........++.... .++ .......+.+.+.||..|+..|+|||+.+++..++
T Consensus 166 ~~~~~~s~~~s~~~~~~~~e~~~~~~~~~~~~~~e~s~~~~~v~~~~~~~~~~~v~~~l~~~~~~~l~dd~~~vt~~~~~ 245 (391)
T KOG3001|consen 166 SDKFDTSAAESVPSPAREQESSPQPPRKKRSTISESSESNPLVETPPTLPATVEVKLSLPQELKRSLVDDWDSVTEVDSL 245 (391)
T ss_pred CCCCCCchhccCCCccchhhcccccccccccccccccCCCCcccCCCCCCccccccccCchhhcccccchhhhhhhhhhh
Confidence 0000000 0 00000111111111 001 11223356889999999999999999999999999
Q ss_pred eeCCCCCCHHHHHHHHHHhhhccC--Cc-chhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcC---CCCCCcccc
Q 021037 179 VKLPRLPNVDDILTKYLQYRSKKD--GM-MTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD---NVSPSTIYG 252 (318)
Q Consensus 179 ~~LPa~~tV~~IL~~y~~~~~~~~--~~-~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~---~~~~S~iYG 252 (318)
+.+|+.++|++|+..|........ .. ....+.+...|++.|||.+||.+|||++||.||.+++.+ +..||++||
T Consensus 246 ~~~~~~~~~e~~~~~~~~~~k~~~~~~~~~~~~~~~~~~g~~~yfn~~lG~~llyk~Er~qy~~~~~~~~~Ds~~s~vyG 325 (391)
T KOG3001|consen 246 AELPQDVTVEQILKKYGFSEKKASGLSNSKEPEVLEVAAGLKRYFNGQLGVMLLYKFERLQYAEVVAKYPKDSPPSNVYG 325 (391)
T ss_pred hcccCCchhhhhhhhhhHhhhhccccccccccccccccccceeeecccchhhhhhhhhhHHHHHHHhcCCCCCCcccchh
Confidence 999999999999999998776432 11 222334555899999999999999999999999999864 335999999
Q ss_pred hHHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhcccc-cCCCCCChhhhhccCC
Q 021037 253 AEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKGKGK 316 (318)
Q Consensus 253 ~~HLLRL~vkLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n~~~~f~-~dY~~~~~eY~~~a~~ 316 (318)
++||||||+|||+||.++.|++++++.|+.++++||+||.+|...||. ++|.+++++|.+.+-+
T Consensus 326 a~HLlRLfvKLpe~l~~~~~~~~~l~~Ll~~~~~flk~L~~~~~~~f~~s~y~~~~~e~~~~~~~ 390 (391)
T KOG3001|consen 326 AEHLLRLFVKLPEILKYTPMDEKSLALLLRHRKDFLKYLRKNSASFFSSSDYSNASPEYSSSSLP 390 (391)
T ss_pred HHHHHHHHhHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhccccccccchhhhchhhhhcccC
Confidence 999999999999999999999999999999999999999999977887 9999999999987754
No 3
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=99.85 E-value=2.4e-21 Score=139.88 Aligned_cols=53 Identities=45% Similarity=0.755 Sum_probs=48.5
Q ss_pred CCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 28 FSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 28 f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|++|++|+|.+ .+.+|+|+|++++..++..+|||||.|||+||||||+.++|.
T Consensus 1 ~~vG~~v~~~~~~~~~y~A~I~~~r~~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 1 FEVGEKVLCKYKDGQWYEAKILDIREKNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp --TTEEEEEEETTTEEEEEEEEEEEECTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CCcCCEEEEEECCCcEEEEEEEEEEecCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 68999999999 899999999999999999999999999999999999999984
No 4
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=99.50 E-value=3.3e-14 Score=140.31 Aligned_cols=56 Identities=29% Similarity=0.486 Sum_probs=50.5
Q ss_pred CCCCCCCEEEEEeC--CceeeeEEEEEEec----CCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 26 SLFSEGERVLAYHG--PCIYEAKVQKAELR----KKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~--~~~y~Akil~~~~~----~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
..|.+|++|+|+|+ |.+|+|+|++++.. ++...|||||.|||+||||||+.+||..
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLdl 113 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLDL 113 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhccc
Confidence 46999999999997 99999999999973 3556899999999999999999999954
No 5
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=97.73 E-value=7.2e-05 Score=53.35 Aligned_cols=51 Identities=24% Similarity=0.304 Sum_probs=44.2
Q ss_pred CCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccccc
Q 021037 27 LFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 27 ~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
.+++|+.|++.+ ++.||.|+|+++... ..|.|+|.++... +||+.+.|...
T Consensus 2 ~~~~G~~~~a~~~d~~wyra~I~~~~~~---~~~~V~f~D~G~~--~~v~~~~l~~l 53 (57)
T smart00333 2 TFKVGDKVAARWEDGEWYRARIIKVDGE---QLYEVFFIDYGNE--EVVPPSDLRPL 53 (57)
T ss_pred CCCCCCEEEEEeCCCCEEEEEEEEECCC---CEEEEEEECCCcc--EEEeHHHeecC
Confidence 589999999998 899999999999864 5799999998876 89998877654
No 6
>smart00561 MBT Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2. These proteins are involved in transcriptional regulation.
Probab=97.70 E-value=0.00015 Score=58.22 Aligned_cols=55 Identities=24% Similarity=0.475 Sum_probs=45.1
Q ss_pred CCCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 24 NSSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
....|++|-++.+.+. ..++-|.|.+|. +....|||.||+.++|.|+..+ +|+..
T Consensus 24 ~~~~F~vGmkLEavD~~~~~~i~vAtV~~v~----g~~l~v~~dg~~~~~D~W~~~~S~~I~Pv 83 (96)
T smart00561 24 PPNGFKVGMKLEAVDPRNPSLICVATVVEVK----GYRLLLHFDGWDDKYDFWCDADSPDIHPV 83 (96)
T ss_pred ccCcccCCCEEEEECCCCCceEEEEEEEEEE----CCEEEEEEccCCCcCCEEEECCCCCcccC
Confidence 3467999999999875 567788999887 2488999999999999999974 66543
No 7
>COG5027 SAS2 Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=97.68 E-value=1.9e-05 Score=75.77 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=48.2
Q ss_pred CCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 30 EGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 30 ~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
++.+|.+..+|....|.|+.+..+..+..|||||..+|+|.||||..+.|.+..
T Consensus 8 ~~sk~~~~~d~e~~~~~Il~~~~~k~~~~fyvh~~~~nrrl~e~i~~~~i~~~~ 61 (395)
T COG5027 8 IKSKVASEKDGEARKAEILEINTRKSRIKFYVHYVELNRRLDEWITADLINLGA 61 (395)
T ss_pred EEeeeeeecCCceeEEeeeeeccCccCccEEEeehhhhhhhhhheecccccccc
Confidence 456777777889999999999999999999999999999999999999998743
No 8
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=97.37 E-value=0.00054 Score=49.74 Aligned_cols=52 Identities=29% Similarity=0.332 Sum_probs=41.7
Q ss_pred CCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 27 LFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 27 ~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
.|.+|+.|.+++ .+.||+|+|+++.. ...|.|+|.+.....-|=|+.++|..
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~~---~~~~~V~~~~~~~~~~e~v~~~~LRp 55 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVLG---DGKYLVRYLTESEPLKETVDWSDLRP 55 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEECC---CCEEEEEECCCCcccEEEEeHHHccc
Confidence 589999999999 89999999999876 34699999995555556666666554
No 9
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=97.34 E-value=0.0002 Score=50.39 Aligned_cols=38 Identities=24% Similarity=0.460 Sum_probs=32.8
Q ss_pred eEEEEEEecC--CeeeEEEEecCCCCCcceeeecCccccc
Q 021037 45 AKVQKAELRK--KEWRYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 45 Akil~~~~~~--~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
.+|++.+..+ +...|+||+.||+.+.|+|++.++|...
T Consensus 6 e~Il~~r~~~~~~~~~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 6 EKILDHRKKKDGGEYEYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred eeeeeeeecCCCCcEEEEEEECCCCCccCccccHHHhCch
Confidence 5677777766 7889999999999999999999998754
No 10
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=97.28 E-value=0.00021 Score=50.16 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=32.6
Q ss_pred eEEEEEE-ecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 45 AKVQKAE-LRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 45 Akil~~~-~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
++|++.+ ..++...|+|||.||+.+.+.|++.+.|..
T Consensus 5 ~~Il~~r~~~~~~~~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 5 EKILDHRWKKKGELEYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred heeeeeeecCCCcEEEEEEECCCCCccCceeeHHHHHH
Confidence 5788888 677788999999999999999999988864
No 11
>PTZ00064 histone acetyltransferase; Provisional
Probab=97.25 E-value=0.00011 Score=73.80 Aligned_cols=27 Identities=30% Similarity=0.774 Sum_probs=24.2
Q ss_pred CeeeEEEEecCCCCCcceeeecCcccc
Q 021037 55 KEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 55 ~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
+...|||||.|+|+|+||||..+||..
T Consensus 147 ~~~eyYVHy~g~nrRlD~WV~~~ri~~ 173 (552)
T PTZ00064 147 EDYEFYVHFRGLNRRLDRWVKGKDIKL 173 (552)
T ss_pred CCeEEEEEecCcCchHhhhcChhhccc
Confidence 345999999999999999999999864
No 12
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=96.90 E-value=0.0026 Score=47.52 Aligned_cols=54 Identities=24% Similarity=0.382 Sum_probs=36.4
Q ss_pred CCCCCEEEEEe-----CCceeeeEEEEEEecCCeeeEEEEecCCCC------CcceeeecCcccccCh
Q 021037 28 FSEGERVLAYH-----GPCIYEAKVQKAELRKKEWRYYVHYLGWNK------NWDEWVGVDRLLKHTE 84 (318)
Q Consensus 28 f~~ge~v~~~~-----~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~------r~DEWV~~~ri~k~~~ 84 (318)
|++|+.|-+.. .|.||.|+|++....+ .|+|-|..... .+-|||+..+|+..-+
T Consensus 1 F~~G~~VEV~s~e~g~~gaWf~a~V~~~~~~~---~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP 65 (68)
T PF05641_consen 1 FKKGDEVEVSSDEDGFRGAWFPATVLKENGDD---KYLVEYDDLPDEDGESPPLKEWVDARRIRPCPP 65 (68)
T ss_dssp --TT-EEEEEE-SBTT--EEEEEEEEEEETT----EEEEEETT-SS--------EEEEEGGGEEE---
T ss_pred CCCCCEEEEEEcCCCCCcEEEEEEEEEeCCCc---EEEEEECCcccccccccccEEEechheEECcCc
Confidence 78999999876 4899999999998765 99999964443 3889999998876544
No 13
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=96.76 E-value=0.0032 Score=43.15 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=36.8
Q ss_pred CCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 31 GERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 31 ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|+.|+|.+. +.||.|+|+++.. ...|.|+|.++... +.|+.+.|.
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~~---~~~~~V~f~DyG~~--~~v~~~~l~ 47 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSILS---DGKVEVFFVDYGNT--EVVPLSDLR 47 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEECC---CCcEEEEEEcCCCc--EEEeHHHcC
Confidence 788999886 9999999999975 45799999998875 667766554
No 14
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=96.62 E-value=0.0044 Score=58.40 Aligned_cols=57 Identities=16% Similarity=0.281 Sum_probs=41.6
Q ss_pred CCCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 25 SSLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 25 ~~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
...+.||++|+|.| +|.+|+|+|.+|....+ .+.|.|.||+.+ |.|..+.|+..+..
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~~~~--~~~V~f~gYgn~--e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESIDEEDG--TCVVVFTGYGNE--EEVNLSDLKPSEGD 124 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEEETT--
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEcccCCe--Eeeehhhhcccccc
Confidence 35799999999988 58999999999987654 677999999765 78888877776544
No 15
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=96.14 E-value=0.012 Score=45.85 Aligned_cols=58 Identities=31% Similarity=0.453 Sum_probs=46.5
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEEecC-------CeeeEEEEecCCCCCcceeeecCcccccChHhH
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAELRK-------KEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~~~~-------~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~ 87 (318)
|.+||.|++..+| .+++|.|++..... ....|.|+|-| +..+ -||+.++|..+++...
T Consensus 1 f~~GdlVwaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg-~~~~-~wv~~~~l~pf~~~~~ 66 (87)
T cd05162 1 FRPGDLVWAKMKGYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFG-DKTF-AWVGAERLKPFTEHKE 66 (87)
T ss_pred CCCCCEEEEeCCCCCCCCEEEccccccchhhhccCCCCEEEEEEeC-CCcE-EEeCccceeeccchHH
Confidence 7899999998876 68999999988642 24699999999 3333 8999999998876553
No 16
>PLN03239 histone acetyltransferase; Provisional
Probab=95.90 E-value=0.0025 Score=61.88 Aligned_cols=22 Identities=45% Similarity=1.011 Sum_probs=20.7
Q ss_pred EEEEecCCCCCcceeeecCccc
Q 021037 59 YYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 59 Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|||||.+.|+|+|+||+.+.|.
T Consensus 1 yYVh~~~~nkRlD~Wv~~~~l~ 22 (351)
T PLN03239 1 YYVHYKDFNRRMDEWISKDKSN 22 (351)
T ss_pred CeEEeccccchHhhhcChhhcc
Confidence 8999999999999999999874
No 17
>KOG2748 consensus Uncharacterized conserved protein, contains chromo domain [Chromatin structure and dynamics]
Probab=95.75 E-value=0.0024 Score=61.48 Aligned_cols=43 Identities=23% Similarity=0.642 Sum_probs=37.4
Q ss_pred ceeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 41 CIYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 41 ~~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
.+|.| .||+-+.++|...|+|-+.||+.+|+-|=|+..|+-..
T Consensus 9 ~VfAaEsIlkkRirKGrvEYlVKWkGWs~kyNTWEPEENILDpR 52 (369)
T KOG2748|consen 9 RVFAAESILKKRIRKGRVEYLVKWKGWSQKYNTWEPEENILDPR 52 (369)
T ss_pred hHHHHHHHHHHHhhccceEEEEEecccccccCccCccccccCHH
Confidence 45666 58888889999999999999999999999999888654
No 18
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=95.75 E-value=0.035 Score=39.94 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 26 SLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 26 ~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
-+|..|++|.+.|+ .++|+|+|++.+... ..|-|-|..
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~~~--~~y~V~Y~D 43 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDSKS--DRYTVLYED 43 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEETTT--TEEEEEETT
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecccC--ceEEEEEcC
Confidence 57999999999997 578899999988754 368888764
No 19
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=95.51 E-value=0.033 Score=42.74 Aligned_cols=57 Identities=23% Similarity=0.358 Sum_probs=45.8
Q ss_pred CCCCCEEEEEeC-CceeeeEEEEEEec----CCeeeEEEEecCCCCCcceeeecCcccccChHhH
Q 021037 28 FSEGERVLAYHG-PCIYEAKVQKAELR----KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87 (318)
Q Consensus 28 f~~ge~v~~~~~-~~~y~Akil~~~~~----~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~ 87 (318)
|.+|+.|++.-+ -.+++|.|+..... .....|.|.|-|=+ .+ .||+.++|..++ ++.
T Consensus 1 f~~GdlVWaK~~g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~-~~-~wv~~~~i~~f~-~~~ 62 (86)
T PF00855_consen 1 FRPGDLVWAKLKGYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDN-DY-AWVKPSNIKPFS-EFK 62 (86)
T ss_dssp -STTEEEEEEETTSEEEEEEEEECCHCTSCSSSSTEEEEEETTTT-EE-EEEEGGGEEECC-HHH
T ss_pred CCCCCEEEEEeCCCCCCceEEeecccccccCCCCCEEEEEecCCC-CE-EEECHHHhhChh-hhH
Confidence 789999999765 46899999988742 34569999999988 44 799999999998 444
No 20
>PF00385 Chromo: Chromo (CHRromatin Organisation MOdifier) domain; InterPro: IPR023780 The CHROMO (CHRromatin Organization MOdifier) domain [, , , ] is a conserved region of around 60 amino acids, originally identified in Drosophila modifiers of variegation. These are proteins that alter the structure of chromatin to the condensed morphology of heterochromatin, a cytologically visible condition where gene expression is repressed. In one of these proteins, Polycomb, the chromo domain has been shown to be important for chromatin targeting. Proteins that contain a chromo domain appear to fall into 3 classes. The first class includes proteins having an N-terminal chromo domain followed by a region termed the chromo shadow domain, with weak but significant sequence similarity to the N-terminal chromo domain,[], eg. Drosophila and human heterochromatin protein Su(var)205 (HP1). The second class includes proteins with a single chromo domain, eg. Drosophila protein Polycomb (Pc); mammalian modifier 3; human Mi-2 autoantigen and several yeast and Caenorhabditis elegans hypothetical proteins. In the third class paired tandem chromo domains are found, eg. in mammalian DNA-binding/helicase proteins CHD-1 to CHD-4 and yeast protein CHD1. Functional dissections of chromo domain proteins suggests a mechanistic role for chromo domains in targeting chromo domain proteins to specific regions of the nucleus. The mechanism of targeting may involve protein-protein and/or protein/nucleic acid interactions. Hence, several line of evidence show that the HP1 chromo domain is a methyl-specific histone binding module, whereas the chromo domain of two protein components of the drosophila dosage compensation complex, MSL3 and MOF, contain chromo domains that bind to RNA in vitro []. The high resolution structures of HP1-family protein chromo and chromo shadow domain reveal a conserved chromo domain fold motif consisting of three beta strands packed against an alpha helix. The chromo domain fold belongs to the OB (oligonucleotide/oligosaccharide binding)-fold class found in a variety of prokaryotic and eukaryotic nucleic acid binding protein [].; PDB: 2H1E_B 3MWY_W 2DY8_A 1KNE_A 1KNA_A 1Q3L_A 2EE1_A 1AP0_A 1GUW_A 1X3P_A ....
Probab=95.17 E-value=0.049 Score=38.44 Aligned_cols=38 Identities=16% Similarity=0.314 Sum_probs=33.3
Q ss_pred eEEEEEEecCCee---eEEEEecCCCCCcceeeecCccccc
Q 021037 45 AKVQKAELRKKEW---RYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 45 Akil~~~~~~~~~---~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
-+|++.+..+++. .|+|++.|+...-+.|++++.|...
T Consensus 4 e~Il~~r~~~~~~~~~~ylVkW~g~~~~~~tWe~~~~l~~~ 44 (55)
T PF00385_consen 4 ERILDHRVVKGGNKVYEYLVKWKGYPYSENTWEPEENLKNC 44 (55)
T ss_dssp EEEEEEEEETTEESEEEEEEEETTSSGGGEEEEEGGGCSSH
T ss_pred EEEEEEEEeCCCcccEEEEEEECCCCCCCCeEeeHHHHhHh
Confidence 3788888877777 9999999999999999999988765
No 21
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=95.05 E-value=0.037 Score=43.12 Aligned_cols=57 Identities=23% Similarity=0.314 Sum_probs=47.0
Q ss_pred CCCCCCEEEEEeCC-ceeeeEEEEEEec-CCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 27 LFSEGERVLAYHGP-CIYEAKVQKAELR-KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 27 ~f~~ge~v~~~~~~-~~y~Akil~~~~~-~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
.|.+||.|++.-.| .+++|+|++.... .....|.|.|-|.+.+ -||+...|..+++.
T Consensus 2 ~f~~GdlVwaK~kGyp~WPa~I~~~~~~~~~~~~~~V~FfGt~~~--a~v~~~~l~pf~~~ 60 (83)
T cd05834 2 QFKAGDLVFAKVKGYPAWPARVDEPEDWKPPGKKYPVYFFGTHET--AFLKPEDLFPYTEN 60 (83)
T ss_pred CCCCCCEEEEecCCCCCCCEEEecccccCCCCCEEEEEEeCCCCE--eEECHHHceecccc
Confidence 69999999997655 5799999988763 3356899999998765 89999999888764
No 22
>cd05837 MSH6_like The PWWP domain is present in MSH6, a mismatch repair protein homologous to bacterial MutS. The PWWP domain of histone-lysine N-methyltransferase, also known as Nuclear SET domain-containing protein 3, is also included. Mutations in MSH6 have been linked to increased cancer susceptibility, particularly in hereditary nonpolyposis colorectal cancer in humans. The role of the PWWP domain in MSH6 is not clear; MSH6 orthologs found in S. cerevisiae, Caenorhabditis elegans and Arabidopsis thaliana lack the PWWP domain. Histone methyltransferases (HMTases) induce the posttranslational methylation of lysine residues in histones and play a role in apoptosis. In the HMTase Whistle, the PWWP domain is necessary for HMTase activity. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain pro
Probab=94.68 E-value=0.05 Score=44.59 Aligned_cols=60 Identities=20% Similarity=0.297 Sum_probs=47.3
Q ss_pred CCCCCCCEEEEEeCC-ceeeeEEEEE----------EecCCeeeEEEEecCCCCCcceeeecCcccccChHh
Q 021037 26 SLFSEGERVLAYHGP-CIYEAKVQKA----------ELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEEN 86 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~-~~y~Akil~~----------~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en 86 (318)
+.|.+|+.|++.-.| -++.|.|..- ........|+|.|-|-+.+| -||+...|..++..+
T Consensus 1 ~~~~~GdlVWaK~~g~PwWPa~V~~~~~~~~~~~~~~~~~~~~~~~V~FFG~~~~~-aWv~~~~l~pf~~~~ 71 (110)
T cd05837 1 SKYQVGDLVWAKVSGYPWWPCMVCSDPLLGTYTKTKRNKRKPRQYHVQFFGDNPER-AWISEKSLKPFKGSK 71 (110)
T ss_pred CCCCCCCEEEEeCCCCCCCCEEEecccccchhhhhhhccCCCCeEEEEEcCCCCCE-EEecHHHccccCCch
Confidence 369999999997765 5799999852 12234569999999998767 599999999887655
No 23
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=93.71 E-value=0.13 Score=37.66 Aligned_cols=54 Identities=24% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEEec--------CCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAELR--------KKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~~~--------~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
|.+||.|++.-.| -++.|+|+.-... .....|.|+|-|=+.. -||+.++|...+
T Consensus 1 f~~GdlVwaK~~G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~--awv~~~~l~p~~ 63 (63)
T smart00293 1 FKPGDLVWAKMKGFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDT--AWISSSKLFPLT 63 (63)
T ss_pred CCCCCEEEEECCCCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCE--EEECccceeeCC
Confidence 7899999998876 5899999988742 2346999999995554 999999887653
No 24
>PF02820 MBT: mbt repeat; InterPro: IPR004092 The function of the malignant brain tumor (MBT) repeat is unknown, but is found in a number of nuclear proteins involved in transcriptional repression. The repeat contains a completely conserved glutamate at its amino terminus that may be important for function. The crystal structure of the two MBT repeats of human SCM-like 2 protein has been reported. Each repeat consists of an extended "arm" and a globular core. The arm of the first repeat packs against the core of the second repeat and vice versa. The structure of the core-interacting part of each arm consists of an N-terminal alpha-helix and a turn of 310 helix connected by a short beta-strand. The core consists of an Src homology 3-like five-stranded beta-barrel followed by a C-terminal alpha-helix and another short beta-strand. Each arm interacts with its partner core in a similar way, with the orientation of the N-terminal helix relative to the barrel varying slightly. There are also extensive interactions between the two barrels [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P0K_A 3F70_B 3CEY_A 2VYT_A 2BIV_A 1OI1_A 3OQ5_A 2RJE_B 2RJD_A 2RI3_A ....
Probab=93.58 E-value=0.24 Score=37.37 Aligned_cols=39 Identities=33% Similarity=0.602 Sum_probs=32.1
Q ss_pred CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 40 PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 40 ~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
..++.|.|+++... .-.|||.||....|.|+..+ +|+..
T Consensus 12 ~~~~vAtV~~v~g~----~l~v~~dg~~~~~d~w~~~~S~~i~Pv 52 (73)
T PF02820_consen 12 SLICVATVVKVCGG----RLLVRYDGWDDDYDFWCHIDSPRIFPV 52 (73)
T ss_dssp CEEEEEEEEEEETT----EEEEEETTSTGGGEEEEETTSTTEEET
T ss_pred CeEEEEEEEEEeCC----EEEEEEcCCCCCccEEEECCCCCeeec
Confidence 56789999998732 38999999999999999974 77653
No 25
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=89.91 E-value=0.57 Score=39.57 Aligned_cols=47 Identities=26% Similarity=0.362 Sum_probs=30.9
Q ss_pred CCCCCCCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCCCC
Q 021037 21 PPSNSSLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGWNK 68 (318)
Q Consensus 21 ~~~~~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~ 68 (318)
.+.....|..|.+||+.+. ...|.|.|...-. .....|.|.|.|=+.
T Consensus 65 ~~~~~~~f~~g~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~l~Fedd~~ 113 (130)
T PF07039_consen 65 DTDPLAEFPKGTKVLALYPDTTCFYPATVVSPPK-KKSGEYKLKFEDDED 113 (130)
T ss_dssp TT-GGGS--TT-EEEEE-TTSSEEEEEEEEEE-S-STTS-EEEEECTTTS
T ss_pred CCCchhhCCCCCEEEEECCCCceEEEEEEEeCCC-CCCCcEEEEEeCCCC
Confidence 3344578999999999997 6799999998844 334589999998443
No 26
>cd05840 SPBC215_ISWI_like The PWWP domain is a component of the S. pombe hypothetical protein SPBC215, as well as ISWI complex protein 4. The ISWI (imitation switch) proteins are ATPases responsible for chromatin remodeling in eukaryotes, and SPBC215 is proposed to also bind chromatin. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=89.67 E-value=0.78 Score=36.47 Aligned_cols=59 Identities=31% Similarity=0.397 Sum_probs=44.9
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEE----------ecCCeeeEEEEecCCCCCcceeeecCcccccChHhHH
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAE----------LRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVM 88 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~----------~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~ 88 (318)
|.+||.|++.-+| .++.|.|+.-. ...+...|.|.|-|=+ .+ -||...+|..+++++..
T Consensus 1 f~~GDlVwaK~~GyPwWPA~V~~~~~~p~~~l~~~~~~~~~~~~V~FFg~~-~~-~Wv~~~~l~pl~~~~~~ 70 (93)
T cd05840 1 FQPGDRVLAKVKGFPAWPAIVVPEEMLPDSVLKGKKKKNKRTYPVMFFPDG-DY-YWVPNKDLKPLTEEKIA 70 (93)
T ss_pred CCCCCEEEEeCCCCCCCCEEECChHHCCHHHHhcccCCCCCeEEEEEeCCC-cE-EEEChhhcccCCHHHHH
Confidence 7899999997655 58999998742 2234568999999922 11 69999999999977654
No 27
>cd05835 Dnmt3b_related The PWWP domain is an essential component of DNA methyltransferase 3 B (Dnmt3b) which is responsible for establishing DNA methylation patterns during embryogenesis and gametogenesis. In tumorigenesis, DNA methylation by Dnmt3b is known to play a role in the inactivation of tumor suppressor genes. In addition, a point mutation in the PWWP domain of Dnmt3b has been identified in patients with ICF syndrome (immunodeficiency, centromeric instability, and facial anomalies), a rare autosomal recessive disorder characterized by hypomethylation of classical satellite DNA. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=88.66 E-value=0.56 Score=36.72 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=42.8
Q ss_pred CCCCCEEEEEeC-CceeeeEEEEEEecC----CeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 28 FSEGERVLAYHG-PCIYEAKVQKAELRK----KEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 28 f~~ge~v~~~~~-~~~y~Akil~~~~~~----~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
|.+||.|++.=. -.+++|+|.+..... ....|.|+|-|.+. =.||+.++|..+.+
T Consensus 1 f~vGDlVWaK~kg~pwWP~~V~~~~~~~~~~~~~~~~~V~fFGs~~--~a~v~~~~l~pf~e 60 (87)
T cd05835 1 FNVGDLVWGKIKGFPWWPGRVVSITVTSKRPPVVGMRWVTWFGSGT--FSEVSVDKLSPFSE 60 (87)
T ss_pred CCCCCEEEEecCCCCCCCeEEechhhcccccCCCCeEEEEEeCCCC--EeEECHHHCcChhH
Confidence 789999999654 458999999876532 24589999999654 38999999987753
No 28
>cd05836 N_Pac_NP60 The PWWP domain is an essential part of the cytokine-like nuclear factor n-pac protein, or NP60, which enhances the activity of MAP2K4 and MAP2K6 kinases to phosphorylate p38-alpha. In a variety of cell lines, NP60 has been shown to localize to the nucleus. In addition to the PWWP domain, NP60 also contains an AT-hook and a C-terminal NAD-binding domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=86.20 E-value=1.9 Score=33.75 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=42.2
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEEe-----cCCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAEL-----RKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~~-----~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
|.+||.|++.-+| -+++|+|++... ......|.|.|-|=+.. -||..+.|..+++.
T Consensus 1 f~~GDlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~V~FFG~~~~--~wv~~~~l~pF~~~ 62 (86)
T cd05836 1 LKLGDLVWAKMKGFPPWPGRIVKPPKDLKKPRGKAKCFFVFFFGSENH--AWIKEENIKPYHEH 62 (86)
T ss_pred CCCCCEEEEeCCCCCCCCEEEechhhhcccccCCCCeEEEEEeCCCCE--EEECHHhCeechhh
Confidence 7899999997665 478999987432 12246899999995532 89999999887643
No 29
>cd05838 WHSC1_related The PWWP domain was first identified in the WHSC1 (Wolf-Hirschhorn syndrome candidate 1) protein, a protein implicated in Wolf-Hirschhorn syndrome (WHS). When translocated, WHSC1 plays a role in lymphoid multiple myeloma (MM) disease, also known as plasmacytoma. WHCS1 proteins typically contain two copies of the PWWP domain. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=83.53 E-value=2.3 Score=33.83 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=41.9
Q ss_pred CCCCEEEEEeCC-ceeeeEEEEEEec--------CCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 29 SEGERVLAYHGP-CIYEAKVQKAELR--------KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 29 ~~ge~v~~~~~~-~~y~Akil~~~~~--------~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
.+||.|++.-+| .+++|.|++.... .....|.|+|-|-+.. -||..++|+.+.+.
T Consensus 2 ~~GdlVWaK~~g~pwWPa~V~~~~~~p~~~~~~~~~~~~~~V~Ffgs~~y--~Wv~~~~l~pf~e~ 65 (95)
T cd05838 2 LYGDIVWAKLGNFRWWPAIICDPREVPPNIQVLRHCIGEFCVMFFGTHDY--YWVHRGRVFPYQEG 65 (95)
T ss_pred CcCCEEEEECCCCCCCCeEEcChhhcChhHhhccCCCCeEEEEEeCCCCE--EEeccccccchhhh
Confidence 579999998765 6899999975421 1235899999996543 69999999888643
No 30
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=82.87 E-value=6.2 Score=30.60 Aligned_cols=53 Identities=17% Similarity=0.184 Sum_probs=41.4
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
|.+||.|++.-.| .+++|+|.++... ...|.|-|.|=+. --.|+..+.++++.
T Consensus 1 f~~gdlVWaK~~g~P~WPa~I~~~~~~--~~k~~V~FfG~~~-~~a~~~~~~l~p~~ 54 (80)
T cd06080 1 FEKNDLVWAKIQGYPWWPAVIKSISRK--KQKARVNFIGDNM-QSEKKGIRVVKRWL 54 (80)
T ss_pred CCCCCEEEEeCCCCCCCCEEEeeecCC--CCEEEEEEeCCCC-ceeccchhhccccc
Confidence 7899999997765 4689999988654 5689999999772 33788888887664
No 31
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=78.53 E-value=5.5 Score=33.26 Aligned_cols=61 Identities=16% Similarity=0.133 Sum_probs=44.2
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEec--CCeeeEEEEecCCCCCcceeeecCcccccChHhHH
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELR--KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVM 88 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~--~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~ 88 (318)
.+...+||.|++.|. -.+++|+|+..-+. .....|.||| ||-+ -.+||.+.+.+..++-++
T Consensus 53 ~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~~~~~~~~~V~f--~ng~-~~~vp~~~~~~I~~~~y~ 118 (124)
T PF15057_consen 53 RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERRASEDKEYTVRF--YNGK-TAKVPRGEVIWISPSYYE 118 (124)
T ss_pred cCcCCCCCEEEEecCcCCCEEeCEEEEECccccccCCceEEEEE--ECCC-CCccchhhEEECCHHHHH
Confidence 467999999999985 45778999975332 2346899998 4444 578888888887765443
No 32
>PHA02763 hypothetical protein; Provisional
Probab=74.45 E-value=0.33 Score=38.17 Aligned_cols=54 Identities=24% Similarity=0.422 Sum_probs=42.5
Q ss_pred CCCCCCCEEEEEeCCceeeeEEEEEEec-CCeeeEEEEecCCCCCcceeeecCccc
Q 021037 26 SLFSEGERVLAYHGPCIYEAKVQKAELR-KKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~~y~Akil~~~~~-~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+-|++|++|...-+...+.+||+.+... .....=||.|.||++ -.||+.+.|=+
T Consensus 26 ~~YK~gqkv~l~v~dr~f~gKvIa~ap~t~~~LsKYv~~SGFe~-VEeWl~eArrL 80 (102)
T PHA02763 26 SFYKIGQKVILKVGDKRFPGKVIAKAPVTEYCLSKYVKFSGFEN-VEEWLNEARRL 80 (102)
T ss_pred hhhccCcEEEEEecCccccceEEEecCchHHHHHHHhhhcchhh-HHHHHHHHHHH
Confidence 4589999998887888899999998863 234456899999987 78999876443
No 33
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=73.14 E-value=2.4 Score=38.26 Aligned_cols=43 Identities=23% Similarity=0.514 Sum_probs=33.6
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCc
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNW 70 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~ 70 (318)
-.|+||++|.+.+ ++..|+|.|..|....+.-. |.|.|+..|=
T Consensus 66 ~~wKVgdkc~A~Y~e~g~~ypatidsi~~~~~tcv--v~ylgygnr~ 110 (218)
T KOG4327|consen 66 QQWKVGDKCSAIYSEDGCIYPATIDSIDFKRETCV--VVYLGYGNRE 110 (218)
T ss_pred hhheecceeeeeeecCcccccceecccccccCceE--EEEEeecchh
Confidence 4699999999965 47889999999996554322 8888887763
No 34
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=71.90 E-value=7.8 Score=30.26 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=42.4
Q ss_pred CCCCCCCEEEEEeCC-ceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 26 SLFSEGERVLAYHGP-CIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~-~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
|.+..||.|++...| -++.|+|++... ..|.|.|-|=.... -||+..+|..++..
T Consensus 5 pc~~p~dLVwAK~kGyp~WPAkV~~~~~----~~~~V~FFG~t~~~-a~v~~~~i~~~~~~ 60 (83)
T cd05841 5 PCRPPHELVWAKLKGFPYWPAKVMRVED----NQVDVRFFGGQHDR-AWIPSNNIQPISTE 60 (83)
T ss_pred ccCCCCCEEEEeCCCCCCCCEEEeecCC----CeEEEEEcCCCCCe-EEEehHHeeehhhh
Confidence 678899999998866 468999997643 58999999822211 69999999988643
No 35
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=69.89 E-value=44 Score=29.55 Aligned_cols=141 Identities=11% Similarity=0.149 Sum_probs=68.3
Q ss_pred ecChhHHHHHHH-HHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhH
Q 021037 156 QIPSTLKKQLVD-DWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKER 234 (318)
Q Consensus 156 ~iP~~Lk~iLvd-D~~~i~~~~~L~~LPa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER 234 (318)
.+|..+..++.. +..-...+| ++++|...+.-+-+....+.-... .-....+..++..|+.||...=.. |+=..
T Consensus 14 ~vP~~i~~~i~~l~~~g~~~eG-iFR~~g~~~~i~~l~~~~~~~~~~-~~~~~~~~~va~~lK~flreLpep-Li~~~-- 88 (192)
T cd04402 14 NLPKPILDMLSLLYQKGPSTEG-IFRRSANAKACKELKEKLNSGVEV-DLKAEPVLLLASVLKDFLRNIPGS-LLSSD-- 88 (192)
T ss_pred CCCHHHHHHHHHHHHhCCCCCC-eeeCCCcHHHHHHHHHHHhCCCCC-CCccCCHHHHHHHHHHHHHhCCCc-cCCHH--
Confidence 467777665433 111223333 788887776333333333222111 111223445666677777665433 33211
Q ss_pred hhHhHhhc------------------CCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHH------------------
Q 021037 235 QQYHDLVV------------------DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLI------------------ 278 (318)
Q Consensus 235 ~QY~~~~~------------------~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~------------------ 278 (318)
.|..++. ...+.+...=+.||+++|.++-.-=....|+..++.
T Consensus 89 -~~~~~~~~~~~~~~~~~i~~l~~~i~~LP~~n~~~L~~l~~~L~~V~~~~~~NkM~~~nLAi~faP~l~~~~~~~~~~~ 167 (192)
T cd04402 89 -LYEEWMSALDQENEEEKIAELQRLLDKLPRPNVLLLKHLICVLHNISQNSETNKMDAFNLAVCIAPSLLWPPASSELQN 167 (192)
T ss_pred -HHHHHHHHHccCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhccccCCCHHHhhhhccccccCCCCccHHHH
Confidence 1222211 112334444445666666554432223344433332
Q ss_pred HHHHHHHHHHHHHHHchhcccccC
Q 021037 279 RLQQKMIDFLKFMQKNQSTFFLSA 302 (318)
Q Consensus 279 ~l~~~l~~fL~fL~~n~~~~f~~d 302 (318)
.-...+..++.||-+|.+..|.+|
T Consensus 168 ~~~~~~~~~~~~LI~~~~~IF~~~ 191 (192)
T cd04402 168 EDLKKVTSLVQFLIENCQEIFGED 191 (192)
T ss_pred HHHHhhhHHHHHHHHhHHHhCCCC
Confidence 112457889999999999999754
No 36
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=69.75 E-value=7 Score=28.52 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=24.9
Q ss_pred CCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 28 FSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 28 f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
-.+||++++.-. .....++|++++..+|.+-|.|+|..
T Consensus 3 A~vGD~lvv~g~~vg~~~r~GeIveV~g~dG~PPY~VRw~D 43 (58)
T PF08940_consen 3 ASVGDRLVVHGRTVGQPDRHGEIVEVRGPDGSPPYLVRWDD 43 (58)
T ss_dssp --TTEEEEES-TTTS--EEEEEEEE-S-SSS-S-EEEEETT
T ss_pred CCCCCEEEEcCCcCCCCCcEeEEEEEECCCCCCCEEEEecC
Confidence 368998887553 45789999999999999999998763
No 37
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=67.99 E-value=11 Score=31.51 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=35.2
Q ss_pred CCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 31 GERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 31 ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
|.+|+|.+. |..|.|.|.+.- +..+|+|+| +..-=+.|+...|....
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~---~~~~~lV~f---~~~~~~~v~~~~iI~~~ 49 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV---SSGQFLVEF---DDGDTQEVPISDIIALS 49 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc---CCCEEEEEE---CCCCEEEeChHHeEEcc
Confidence 789999884 999999999876 456999999 22333677777776543
No 38
>cd05839 BR140_related The PWWP domain is found in the BR140 family, which includes peregrin and BR140-like proteins 1 and 2. BR140 is the only family to contain the PWWP domain at the C terminus, with PHD and bromo domains in the N-terminal region. In myeloid leukemias, BR140 is disrupted by chromosomal translocations, similar to translocations of WHSC1 in lymphoid multiple myeloma. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding proteins, that function as transcription factors regulating a variety of developmental processes.
Probab=63.77 E-value=9.5 Score=31.45 Aligned_cols=60 Identities=18% Similarity=0.315 Sum_probs=43.7
Q ss_pred CCCCCEEEEEeCC-ceeeeEEEEEEe-----------------------cCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 28 FSEGERVLAYHGP-CIYEAKVQKAEL-----------------------RKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 28 f~~ge~v~~~~~~-~~y~Akil~~~~-----------------------~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
++.|+.|++...| -+|.|.|++-.. ..+...|.|+|.|=...| -||+..+|...+
T Consensus 1 ~~pg~lVwaK~~g~P~wPa~iidp~~~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~lV~FFd~~~s~-~Wv~~~~l~pl~ 79 (111)
T cd05839 1 LEPLTLVWAKCRGYPSYPALIIDPKMPRDGVFHNGVPPDVLTLGEARAQNADERLYLVLFFDNKRTW-QWLPGDKLEPLG 79 (111)
T ss_pred CCCcCEeeeeecCCCCCCeEeeCCCCCCcccccCCCCchhhhHHHHHhccCCCcEEEEEEecCCCcc-eecCHHHCcccc
Confidence 3679999987655 478999887541 224568999999854555 599999998887
Q ss_pred hHhHH
Q 021037 84 EENVM 88 (318)
Q Consensus 84 ~en~~ 88 (318)
.++-.
T Consensus 80 ~~~~~ 84 (111)
T cd05839 80 VDETL 84 (111)
T ss_pred cchhh
Confidence 65543
No 39
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=62.91 E-value=95 Score=27.38 Aligned_cols=137 Identities=13% Similarity=0.195 Sum_probs=65.3
Q ss_pred ecChhHHHHHHHHH-HHhhhCCceeeCCCCCC-HHHHHHHHHHhhhccCCcch-hhHHHHHHHHHHHHHhhcCcccCChh
Q 021037 156 QIPSTLKKQLVDDW-EFVNQQDKLVKLPRLPN-VDDILTKYLQYRSKKDGMMT-DSIGEILKGIRCYFDKALPVMLLYKK 232 (318)
Q Consensus 156 ~iP~~Lk~iLvdD~-~~i~~~~~L~~LPa~~t-V~~IL~~y~~~~~~~~~~~~-~~~~e~~~gl~~yFn~~L~~~LLY~~ 232 (318)
.||..|..++..=. .-+..+ -++++|...+ |+++.+.|-..... .... ..+..++..|+.||...=. -|+-.
T Consensus 22 ~iP~il~~~i~~l~~~g~~~e-GIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va~~LK~~lr~Lp~-pLi~~- 96 (195)
T cd04404 22 PIPPVVRETVEYLQAHALTTE-GIFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPAVILKTFLRELPE-PLLTF- 96 (195)
T ss_pred CCChHHHHHHHHHHHcCCCCC-CeeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHHHHHHHHHHhCCC-ccCCH-
Confidence 46777765533221 123333 3788887654 44444444321111 1111 1233455567777775533 33321
Q ss_pred hHhhHhHhhc-----------------CCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHH----------------
Q 021037 233 ERQQYHDLVV-----------------DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIR---------------- 279 (318)
Q Consensus 233 ER~QY~~~~~-----------------~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~---------------- 279 (318)
| .|..++. ...++....=+.+|+++|.++-.--....|+.+++..
T Consensus 97 ~--~~~~l~~~~~~~~~~~~~~~~~~i~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~~~~~~~~l 174 (195)
T cd04404 97 D--LYDDIVGFLNVDKEERVERVKQLLQTLPEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLWAKDASMSL 174 (195)
T ss_pred H--HHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccCCCCcccCH
Confidence 1 1222211 1123444444556666666554332233454444332
Q ss_pred -HHHHHHHHHHHHHHchhccc
Q 021037 280 -LQQKMIDFLKFMQKNQSTFF 299 (318)
Q Consensus 280 -l~~~l~~fL~fL~~n~~~~f 299 (318)
=...++.|++||-+|.++.|
T Consensus 175 ~~~~~~~~~~~~LI~~~~~iF 195 (195)
T cd04404 175 SAINPINTFTKFLLDHQDEIF 195 (195)
T ss_pred HHHHHHHHHHHHHHHhHHhhC
Confidence 12446789999999988776
No 40
>KOG2747 consensus Histone acetyltransferase (MYST family) [Chromatin structure and dynamics]
Probab=62.12 E-value=1.8 Score=42.99 Aligned_cols=35 Identities=34% Similarity=0.633 Sum_probs=27.0
Q ss_pred ceeeeEEEEEEecCC-eeeEEEEecCCCCCcceeee
Q 021037 41 CIYEAKVQKAELRKK-EWRYYVHYLGWNKNWDEWVG 75 (318)
Q Consensus 41 ~~y~Akil~~~~~~~-~~~Y~VHY~Gwn~r~DEWV~ 75 (318)
....|.+........ ...|+|||++.|+|.|+||+
T Consensus 34 ~~~~~~~~~~~~~~s~~~~~~v~~~~~~~r~d~~~~ 69 (396)
T KOG2747|consen 34 ENRKAETLPRKLIQSASLEYYVHYQKLNRRLDEWIG 69 (396)
T ss_pred ccccccccccccccCCCccchhhHHhhhcccccccc
Confidence 444555655555444 67999999999999999999
No 41
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=61.68 E-value=18 Score=37.05 Aligned_cols=51 Identities=29% Similarity=0.444 Sum_probs=43.3
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCC-cceeeecCc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKN-WDEWVGVDR 78 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r-~DEWV~~~r 78 (318)
++.|+||.++.+... ..+-.|.|.+|... ....||+.||..- +|.|+..+.
T Consensus 198 ~~~F~vgmkLEavd~~np~~IcvATV~~V~~~---~~i~v~~d~~~~~~~d~~~~~~s 252 (478)
T KOG3766|consen 198 PSRFQVGMKLEAVDDLNPSAICVATVVEVFDS---REILVHFDGWDKSELDYWCDHDS 252 (478)
T ss_pred CCcceeccEEEEeccCCCcceeeeehheeccc---ceEEEEeccCCCcccceeEecCC
Confidence 478999999999774 67888888888764 3589999999999 999999875
No 42
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=58.07 E-value=26 Score=27.25 Aligned_cols=54 Identities=22% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 25 SSLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 25 ~~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
.....+|+.++|.. ++.||.|+|. . ..+...|.|.|..+... ++|+.+.|....
T Consensus 49 ~~~~~~~~~~~~~~~~~~~w~Ra~I~-~--~~~~~~~~V~~iD~G~~--~~v~~~~l~~l~ 104 (121)
T PF00567_consen 49 SPESNPGEGCLCVVSEDGRWYRAVIT-V--DIDENQYKVFLIDYGNT--EKVSASDLRPLP 104 (121)
T ss_dssp CST--TTEEEEEEETTTSEEEEEEEE-E--EECTTEEEEEETTTTEE--EEEEGGGEEE--
T ss_pred ccccccCCEEEEEEecCCceeeEEEE-E--ecccceeEEEEEecCce--EEEcHHHhhhhC
Confidence 34567888888865 5999999992 2 22345899999988764 668888887654
No 43
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=54.10 E-value=20 Score=33.76 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCCCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEec
Q 021037 24 NSSLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYL 64 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~ 64 (318)
+...|..|..||+.++ ..+|.|.|...-.+..+..|..-|.
T Consensus 195 p~~~fpp~~~VLA~YP~TTcFY~aiVh~tp~d~s~~y~vlffD 237 (264)
T KOG3038|consen 195 PTALFPPGTIVLAVYPGTTCFYKAIVHSTPRDGSCDYYVLFFD 237 (264)
T ss_pred CccCCCCCCEEEEEcCCcceeeeeEeecCCCCCCCcceeeeec
Confidence 5678999999999997 4699999998766554444444443
No 44
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=39.85 E-value=43 Score=31.27 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=24.8
Q ss_pred CCCCCCEEEEEe--CCceeeeEEEEEEecCC
Q 021037 27 LFSEGERVLAYH--GPCIYEAKVQKAELRKK 55 (318)
Q Consensus 27 ~f~~ge~v~~~~--~~~~y~Akil~~~~~~~ 55 (318)
.|.+|++|.+.| +|.+|+|.|-.|....+
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita~~~ 120 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITAMEG 120 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccCCCC
Confidence 699999999977 49999999999887443
No 45
>KOG3001 consensus Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins [Chromatin structure and dynamics; Transcription]
Probab=39.65 E-value=6.1 Score=39.46 Aligned_cols=66 Identities=21% Similarity=0.079 Sum_probs=49.2
Q ss_pred CCCCCCCCCCEEEEEeCCceeeeEEEEEEecC------------------CeeeEEEEecCCCCCcc------------e
Q 021037 23 SNSSLFSEGERVLAYHGPCIYEAKVQKAELRK------------------KEWRYYVHYLGWNKNWD------------E 72 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~~~~y~Akil~~~~~~------------------~~~~Y~VHY~Gwn~r~D------------E 72 (318)
.+...|.+|+.|.|.....+|+|.+...+... +...|.+|+.|||.|.| +
T Consensus 43 ~~k~~~~~~e~v~~~~~~k~~e~~~~~~e~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~k~a~~~k~~~~~~~~~~~~~~ 122 (391)
T KOG3001|consen 43 RSKWRDSIGEEVPETLKLKPYEANAKDEEELRMNKSLSSQDEDETITKAKGKECKRKAFKGANPRKKHRTTMPTAGMNEE 122 (391)
T ss_pred ccccCCccchhhhhhhcCCcchhhHHHHHHhhhhccccccccccccccchhhHHHHHHhhccCccccccccccccccccc
Confidence 33467999999999999999999877766543 23467788889999988 6
Q ss_pred eeec----CcccccChHhHH
Q 021037 73 WVGV----DRLLKHTEENVM 88 (318)
Q Consensus 73 WV~~----~ri~k~~~en~~ 88 (318)
-++. +|+++.+..++.
T Consensus 123 ~~~~~~~~d~~~~~~~g~~~ 142 (391)
T KOG3001|consen 123 KIPVGKNVDRIKEGVDGQRK 142 (391)
T ss_pred cccccccccccccCcccccc
Confidence 6664 577777665554
No 46
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=38.69 E-value=80 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=24.8
Q ss_pred EEEEeC--CceeeeEEEEEEecC----CeeeEEEEecCCCC
Q 021037 34 VLAYHG--PCIYEAKVQKAELRK----KEWRYYVHYLGWNK 68 (318)
Q Consensus 34 v~~~~~--~~~y~Akil~~~~~~----~~~~Y~VHY~Gwn~ 68 (318)
|-|... |.|++|+|..|-... ....|.|-|.++..
T Consensus 2 vD~~d~~~gAWfEa~i~~i~~~~~~~~e~viYhIkyddype 42 (85)
T PF12148_consen 2 VDARDRNMGAWFEAQIVTITKKCMSDDEDVIYHIKYDDYPE 42 (85)
T ss_dssp EEEE-TTT-EEEEEEEEEEEES-SSSSTTEEEEEEETT-GG
T ss_pred cccccCCCcceEEEEEEEeeccCCCCCCCEEEEEEeccCCC
Confidence 446653 889999999998753 36799999998764
No 47
>PF10781 DSRB: Dextransucrase DSRB; InterPro: IPR019717 DSRB is a novel dextransucrase which produces a dextran different from the typical dextran, as it contains (1-6) and (1-2) linkages, when this strain is grown in the presence of sucrose [].
Probab=38.15 E-value=80 Score=23.00 Aligned_cols=39 Identities=18% Similarity=0.106 Sum_probs=32.1
Q ss_pred CCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCC
Q 021037 29 SEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWN 67 (318)
Q Consensus 29 ~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn 67 (318)
+++|+|.+.- |+..++..|+.+..-+.+.-|+|--..+-
T Consensus 2 kvnD~VtVKTDG~~rR~G~ilavE~F~EG~MYLvaL~dYP 41 (62)
T PF10781_consen 2 KVNDRVTVKTDGGPRREGVILAVEPFNEGTMYLVALEDYP 41 (62)
T ss_pred ccccEEEEecCCcccccceEEEEeeccCcEEEEEEcCcCC
Confidence 5789999865 57789999999999888889999766543
No 48
>PRK10708 hypothetical protein; Provisional
Probab=37.80 E-value=85 Score=22.87 Aligned_cols=39 Identities=18% Similarity=0.068 Sum_probs=32.2
Q ss_pred CCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCC
Q 021037 29 SEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWN 67 (318)
Q Consensus 29 ~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn 67 (318)
+++|+|.+.- |+..++..||.|..-+.+.-|+|--..+-
T Consensus 2 kvnD~VtVKTDG~~rR~G~iLavE~F~EG~MyLvaL~dYP 41 (62)
T PRK10708 2 KVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVSLEDYP 41 (62)
T ss_pred ccccEEEEecCCCccccceEEEEeeccCcEEEEEEcCcCC
Confidence 5789999865 57789999999999888889999766543
No 49
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=33.74 E-value=3.3e+02 Score=23.97 Aligned_cols=19 Identities=11% Similarity=0.380 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHchhccc
Q 021037 281 QQKMIDFLKFMQKNQSTFF 299 (318)
Q Consensus 281 ~~~l~~fL~fL~~n~~~~f 299 (318)
...++.++++|-+|.+.+|
T Consensus 181 ~~~~~~~~~~lI~~~~~~F 199 (199)
T cd04390 181 TPQIQQLMTVMISKHEPLF 199 (199)
T ss_pred cHHHHHHHHHHHHhhhhcC
Confidence 3456778888888877766
No 50
>PF11390 FdsD: NADH-dependant formate dehydrogenase delta subunit FdsD; InterPro: IPR021074 FdsD is the delta subunit of the enzyme formate dehydrogenase. This subunit may play a role in maintaining the quaternary structure by means of electrostatic interactions with the other subunits []. The delta subunit is not involved in the active centre of the enzyme [].
Probab=33.73 E-value=59 Score=23.89 Aligned_cols=33 Identities=12% Similarity=0.303 Sum_probs=27.7
Q ss_pred HHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHH
Q 021037 255 HLLRLFVKLPELLAYVNIEDETLIRLQQKMIDF 287 (318)
Q Consensus 255 HLLRL~vkLP~ll~~~~~d~~~~~~l~~~l~~f 287 (318)
||.||--.+-.++...+-.++.+..+..||+.|
T Consensus 1 ~LI~MANQIa~ff~~~p~~~~a~~~va~Hi~kF 33 (61)
T PF11390_consen 1 KLIKMANQIAAFFESYPPEEEAVEGVANHIKKF 33 (61)
T ss_pred CHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHh
Confidence 788999999999988877777888888888776
No 51
>KOG3766 consensus Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans) [Transcription]
Probab=33.14 E-value=42 Score=34.53 Aligned_cols=49 Identities=29% Similarity=0.518 Sum_probs=38.5
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD 77 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ 77 (318)
...|.+|.++.+..- ...--|.|.++..... -||+.||...+|.||+.+
T Consensus 305 ~~~~k~~~k~e~~d~~~p~~~~vatv~~~~~~~~----~~h~d~~~~~~~~~i~~d 356 (478)
T KOG3766|consen 305 NHLFKVGMKLEAVDLRNPRLICVATVEKVCKTPL----IIHFDGWPSEYDFWIDID 356 (478)
T ss_pred CccccccceeeeccccCCcccccccchhcccccc----ccCCCCCCcccceeeecC
Confidence 367999998888763 4566777777765543 899999999999999864
No 52
>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]
Probab=32.96 E-value=2.6e+02 Score=32.60 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=43.5
Q ss_pred ceeeCCCCCCHHHHHHHHHHhhhccCC--------------------cchhhHHHHHHHHHHHHHhh-----cCcccCCh
Q 021037 177 KLVKLPRLPNVDDILTKYLQYRSKKDG--------------------MMTDSIGEILKGIRCYFDKA-----LPVMLLYK 231 (318)
Q Consensus 177 ~L~~LPa~~tV~~IL~~y~~~~~~~~~--------------------~~~~~~~e~~~gl~~yFn~~-----L~~~LLY~ 231 (318)
+...-|.-.+|++.+.+|.++...... .....-.-++++|+.|||-. =+.-.||.
T Consensus 607 ~~i~~pSl~tIdqmlddfr~~ik~av~~kq~~~~l~s~~~d~~~~v~~d~~f~n~Lv~~l~~yF~ll~lki~~~~~~l~~ 686 (1509)
T KOG4645|consen 607 RKITNPSLLTIDQMLDDFKEFIKVAVQMKQYQFTLASPCEDLSKPVDNDPAFENTLVKSLKFYFDLLRLKILQGLKQLFF 686 (1509)
T ss_pred cccCCCcceeHHHHHHHHHHHHHHHHHHhhhheeeecccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccchhccc
Confidence 445668889999999999998865431 01112245788999999965 24557888
Q ss_pred hhHhhHhH
Q 021037 232 KERQQYHD 239 (318)
Q Consensus 232 ~ER~QY~~ 239 (318)
.|+.+-.+
T Consensus 687 ~~~dlLe~ 694 (1509)
T KOG4645|consen 687 KEPDLLEE 694 (1509)
T ss_pred hhHHHHHH
Confidence 88766444
No 53
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=32.16 E-value=92 Score=17.99 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=19.5
Q ss_pred CCCCCCEEEEEeCCc-eeeeEEEEEE
Q 021037 27 LFSEGERVLAYHGPC-IYEAKVQKAE 51 (318)
Q Consensus 27 ~f~~ge~v~~~~~~~-~y~Akil~~~ 51 (318)
.|.+|+.|.+..++. -..|.|+++.
T Consensus 1 ~~~~G~~V~I~~G~~~g~~g~i~~i~ 26 (28)
T smart00739 1 KFEVGDTVRVIAGPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCCEEEEeECCCCCcEEEEEEEc
Confidence 378999999998743 4678888775
No 54
>PF13495 Phage_int_SAM_4: Phage integrase, N-terminal SAM-like domain; PDB: 2A3V_A.
Probab=31.42 E-value=83 Score=23.19 Aligned_cols=45 Identities=27% Similarity=0.500 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCc
Q 021037 181 LPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPV 226 (318)
Q Consensus 181 LPa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~ 226 (318)
-|...|.++| .+|+.+......-....++-...+|+.+|+.++..
T Consensus 37 ~~~~it~~~i-~~y~~~l~~~~~~s~~T~~~~~~~l~~ff~~~~~~ 81 (85)
T PF13495_consen 37 PPDEITPEDI-EQYLNYLQNERGLSPSTINQYLSALRSFFRWLLER 81 (85)
T ss_dssp -GGG--HHHH-HHHHHHHHTTT---HHHHHHHHHHHHHHHHCTSS-
T ss_pred ccchhHHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 3566777776 78888887433233445667788999999998864
No 55
>PF04319 NifZ: NifZ domain; InterPro: IPR007415 NifZ is a short protein is found in the nif (nitrogen fixation) operon. It is required for the maturation of the nitrogenase MoFe protein. In the absence of NifZ, only one of the two P-clusters of the MoFe protein is matured to the ultimate [8Fe-7S] structure. The other P-cluster site in the protein contains a [4Fe-4S] cluster pair, suggesting that NifZ is specifically required for the formation of the second P-cluster [, , ].; GO: 0009399 nitrogen fixation
Probab=30.40 E-value=76 Score=24.35 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=11.5
Q ss_pred CCCCCCCCEEEEEe
Q 021037 25 SSLFSEGERVLAYH 38 (318)
Q Consensus 25 ~~~f~~ge~v~~~~ 38 (318)
+|.|+.|++|.+..
T Consensus 2 ~p~f~~G~~V~a~~ 15 (75)
T PF04319_consen 2 PPRFEWGDKVRARK 15 (75)
T ss_pred CCccCCCCEEEEEE
Confidence 47899999998854
No 56
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=30.34 E-value=83 Score=26.19 Aligned_cols=32 Identities=9% Similarity=0.054 Sum_probs=24.9
Q ss_pred CCCCCCEEEEEeC--CceeeeEEEEEEecCCeee
Q 021037 27 LFSEGERVLAYHG--PCIYEAKVQKAELRKKEWR 58 (318)
Q Consensus 27 ~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~ 58 (318)
.|.+||-|++..+ ...|-|+|.++.+..++..
T Consensus 3 ~~~lgD~V~v~~~~~~~~yi~rI~~i~e~~~g~~ 36 (122)
T cd04716 3 TYNLGDDAYVQGGEGEEPFICKITEFFEGTDGKT 36 (122)
T ss_pred EEEcCCEEEEECCCCCCCEEEEEEEEEEcCCCce
Confidence 4789999988754 5689999999998655543
No 57
>PRK00236 xerC site-specific tyrosine recombinase XerC; Reviewed
Probab=29.40 E-value=4.1e+02 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.382 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 271 NIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 271 ~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
.+....++..+..|..|++|+.++
T Consensus 69 ~~~~~t~~~~~~~l~~~~~~a~~~ 92 (297)
T PRK00236 69 GLSARSLARRLSALRSFYRWLVRR 92 (297)
T ss_pred ccChhHHHHHHHHHHHHHHHHHhc
Confidence 345567777888899999998876
No 58
>PF05372 Delta_lysin: Delta lysin family; InterPro: IPR008034 Delta-lysin is a 26 amino acid, hemolytic peptide toxin secreted by Staphylococcus aureus. It is thought that delta-toxin forms an amphipathic helix upon binding to lipid bilayers []. The precise mode of action of delta-lysis is unclear.; GO: 0019836 hemolysis by symbiont of host erythrocytes, 0005576 extracellular region; PDB: 2KAM_A 2DTB_A 1DTC_A.
Probab=28.93 E-value=84 Score=18.81 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHchhcc
Q 021037 278 IRLQQKMIDFLKFMQKNQSTF 298 (318)
Q Consensus 278 ~~l~~~l~~fL~fL~~n~~~~ 298 (318)
..|.+.+.+|++|+.+...+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (25)
T PF05372_consen 3 ADIISTIGDFVKLIIETVKKF 23 (25)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHh
Confidence 457788999999999877665
No 59
>TIGR00922 nusG transcription termination/antitermination factor NusG. Archaeal proteins once termed NusG share the KOW domain but are actually a ribosomal protein corresponding to L24p in bacterial and L26e in eukaryotes (TIGR00405).
Probab=28.65 E-value=1.7e+02 Score=25.08 Aligned_cols=40 Identities=25% Similarity=0.433 Sum_probs=31.4
Q ss_pred CCCCCCCEEEEEeCCc-eeeeEEEEEEecCCeeeEEEEecC
Q 021037 26 SLFSEGERVLAYHGPC-IYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~-~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
..|.+|++|.+..|+. -++|.|.+++..++...-.|...|
T Consensus 118 ~~~~~G~~V~I~~Gpf~G~~g~v~~~~~~~~r~~V~v~~~g 158 (172)
T TIGR00922 118 IDFEVGEQVRVNDGPFANFTGTVEEVDYEKSKLKVSVSIFG 158 (172)
T ss_pred cCCCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEECC
Confidence 5589999999999976 489999999866665566666655
No 60
>smart00439 BAH Bromo adjacent homology domain.
Probab=28.61 E-value=1.4e+02 Score=23.35 Aligned_cols=30 Identities=20% Similarity=0.192 Sum_probs=24.1
Q ss_pred CCCCCCEEEEEeC---CceeeeEEEEEEecCCe
Q 021037 27 LFSEGERVLAYHG---PCIYEAKVQKAELRKKE 56 (318)
Q Consensus 27 ~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~ 56 (318)
.|.+||-|++..+ ...|-|+|.++....++
T Consensus 1 ~~~vgd~V~v~~~~~~~~~~i~~I~~i~~~~~~ 33 (120)
T smart00439 1 TIRVGDFVLVEPDDADEPYYIGRIEEIFETKKN 33 (120)
T ss_pred CcccCCEEEEeCCCCCCCCEEEEEEEEEECCCC
Confidence 3789999999865 35899999999986543
No 61
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.35 E-value=1e+02 Score=29.83 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=33.4
Q ss_pred CEEEEEe------CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeee
Q 021037 32 ERVLAYH------GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVG 75 (318)
Q Consensus 32 e~v~~~~------~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~ 75 (318)
..|.||+ +|..=.|.++--+..++..--.|||+|++-|-++|-+
T Consensus 52 ~~ve~ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~ 101 (321)
T COG3458 52 PRVEVYDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHD 101 (321)
T ss_pred CceEEEEEEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCCCccc
Confidence 4577876 3565667777677766777889999999999888844
No 62
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=28.22 E-value=4.2e+02 Score=23.43 Aligned_cols=57 Identities=9% Similarity=0.160 Sum_probs=34.2
Q ss_pred CCCcccchHHHHHHHhhhhHHhccCCCCHHHHHH---------------------HHHHHHHHHHHHHHchhcccccC
Q 021037 246 SPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIR---------------------LQQKMIDFLKFMQKNQSTFFLSA 302 (318)
Q Consensus 246 ~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~---------------------l~~~l~~fL~fL~~n~~~~f~~d 302 (318)
+.....=.-+|+.+|.++-+--....|+..++.. ...+..+++.+|-+|.+.+|.+|
T Consensus 125 P~~n~~~L~~l~~~l~~v~~~~~~NkM~~~nLai~faP~ll~~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF~~~ 202 (203)
T cd04386 125 PRENRDNLRYLIKFLSKLAQKSDENKMSPSNIAIVLAPNLLWAKNEGSLAEMAAGTSVHVVAIVELIISHADWFFPGE 202 (203)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccccCCChHHHHHHhccccCCCCCCChhhhhhhhhhHHHHHHHHHHHHhHHHhCCCC
Confidence 3444444556666666555533334444433321 12457899999999999999754
No 63
>PRK14752 delta-hemolysin; Provisional
Probab=27.66 E-value=63 Score=21.61 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=25.9
Q ss_pred HHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhcc
Q 021037 256 LLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTF 298 (318)
Q Consensus 256 LLRL~vkLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n~~~~ 298 (318)
+||.|.-+-+=... +...|...+.+|++|+-+...+|
T Consensus 5 ilrifilikegvis------ma~dii~tig~~vk~ii~tv~kf 41 (44)
T PRK14752 5 ILRIFILIKEGVIS------MAQDIISTIGDLVKWIIDTVNKF 41 (44)
T ss_pred HHHHHHHHHHhHHH------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888765553221 23568889999999998877765
No 64
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=26.59 E-value=1e+02 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=23.4
Q ss_pred CCCCCCEEEEEeC---CceeeeEEEEEEecCC
Q 021037 27 LFSEGERVLAYHG---PCIYEAKVQKAELRKK 55 (318)
Q Consensus 27 ~f~~ge~v~~~~~---~~~y~Akil~~~~~~~ 55 (318)
.|.+||-|++.-. ...|-|+|.++....+
T Consensus 3 ~~~vGD~V~v~~~~~~~~pyIgrI~~i~e~~~ 34 (121)
T cd04714 3 IIRVGDCVLFKSPGRPSLPYVARIESLWEDPE 34 (121)
T ss_pred EEEcCCEEEEeCCCCCCCCEEEEEEEEEEcCC
Confidence 5889999998754 3589999999998654
No 65
>PF07154 DUF1392: Protein of unknown function (DUF1392); InterPro: IPR009824 This family consists of several hypothetical cyanobacterial proteins of around 150 residues in length, which seem to be specific to Anabaena species. The function of this family is unknown.
Probab=26.10 E-value=1.5e+02 Score=25.69 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=29.3
Q ss_pred CCCCCCCCEEEE-EeCCceeeeEEEEEEecCCeeeEEE
Q 021037 25 SSLFSEGERVLA-YHGPCIYEAKVQKAELRKKEWRYYV 61 (318)
Q Consensus 25 ~~~f~~ge~v~~-~~~~~~y~Akil~~~~~~~~~~Y~V 61 (318)
.|.|..||+|.. |++...-.--|+.|...++.+-|.|
T Consensus 85 kp~F~LGd~V~~~f~~~~pkqRlIlGv~lv~~~W~Y~V 122 (150)
T PF07154_consen 85 KPAFRLGDRVEFRFYSDGPKQRLILGVFLVNNSWFYAV 122 (150)
T ss_pred CCceecCCEEEEEecCCCCceEEEEEEEEecCceEEEE
Confidence 478999999976 5454444556999999999999998
No 66
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=26.10 E-value=1.3e+02 Score=33.39 Aligned_cols=55 Identities=16% Similarity=0.052 Sum_probs=42.0
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
.....|+-|++.+ ++.||.|.|+.|..- ...-|||..+.. .|-+|..+|-..++.
T Consensus 694 ~~p~~gd~c~A~y~~D~qwyRa~i~~V~~~---~~~~V~yiDygn--~E~lp~~~l~~lp~~ 750 (875)
T KOG2039|consen 694 YTPKRGDLCVAKYSLDGQWYRALIVEVLDP---ESMEVFYIDYGN--IETLPFVRLKPLPPH 750 (875)
T ss_pred CCCCCCCeeeeeeccccceeeeeeeeeccC---cceeEEEEecCc--ccccccccccCCChH
Confidence 4678999999988 799999999997653 345667776554 588888888766543
No 67
>PRK05609 nusG transcription antitermination protein NusG; Validated
Probab=24.65 E-value=2.4e+02 Score=24.33 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCCCCEEEEEeCCc-eeeeEEEEEEecCCeeeEEEEecC
Q 021037 26 SLFSEGERVLAYHGPC-IYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~-~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
..|.+|++|.+..|+. -++|.|.+++..++...-.|...|
T Consensus 125 ~~~~~Gd~VrI~~GPf~G~~g~v~~i~~~~~r~~v~l~~~G 165 (181)
T PRK05609 125 VDFEVGEMVRVIDGPFADFNGTVEEVDYEKSKLKVLVSIFG 165 (181)
T ss_pred cCCCCCCEEEEeccCCCCCEEEEEEEeCCCCEEEEEEEECC
Confidence 5699999999999976 489999998765544444444444
No 68
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=24.37 E-value=5.3e+02 Score=23.31 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.2
Q ss_pred HHHHHHHHHHchhcccc
Q 021037 284 MIDFLKFMQKNQSTFFL 300 (318)
Q Consensus 284 l~~fL~fL~~n~~~~f~ 300 (318)
...-+.||-+|.+.+|.
T Consensus 199 ~~~~v~~lI~~~~~lf~ 215 (220)
T cd04375 199 AHQCLAYMIEECNTLFM 215 (220)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 45668888888888886
No 69
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=23.68 E-value=62 Score=26.08 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=15.7
Q ss_pred eeeCCCCCCHHHHHHHHHHhh
Q 021037 178 LVKLPRLPNVDDILTKYLQYR 198 (318)
Q Consensus 178 L~~LPa~~tV~~IL~~y~~~~ 198 (318)
|..=|+.|||++||+|-....
T Consensus 7 LPtRP~PPTvEqILEDv~~A~ 27 (97)
T PF15136_consen 7 LPTRPEPPTVEQILEDVRGAP 27 (97)
T ss_pred CCCCCCCCCHHHHHHHHhcCC
Confidence 334477799999999976553
No 70
>KOG1904 consensus Transcription coactivator [Transcription]
Probab=23.48 E-value=73 Score=32.93 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=45.8
Q ss_pred CCCCCCCCCCEEEEEeC-CceeeeEEEEEEec---CCeeeEEEEecCCCCCcceeeecCcccccChHh
Q 021037 23 SNSSLFSEGERVLAYHG-PCIYEAKVQKAELR---KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEEN 86 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~-~~~y~Akil~~~~~---~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en 86 (318)
...+.|.+|+.|++.=. --.|.|+|...... .....|+|-|.|=... -||...+|+.|....
T Consensus 8 ~~~~~~~~GDLV~AKlkgyp~WParI~~~~~~~~kp~pkky~V~FfGT~e~--Afl~p~dlqpy~~~k 73 (496)
T KOG1904|consen 8 SAAGNFKCGDLVFAKLKGYPPWPARIRNGPDGAVKPPPKKYTVFFFGTKET--AFLKPKDLQPYMLNK 73 (496)
T ss_pred cccCCCCCCceeeecccCCCCCcccccCcccccccCCCceeEEEEeccCcc--cccchhhccchhhhh
Confidence 34578999999999654 45789999987764 4457999999984432 578777777775444
No 71
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=23.04 E-value=1.7e+02 Score=25.44 Aligned_cols=30 Identities=17% Similarity=0.083 Sum_probs=25.0
Q ss_pred CCCCCCCCEEEEEeC-CceeeeEEEEEEecC
Q 021037 25 SSLFSEGERVLAYHG-PCIYEAKVQKAELRK 54 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~ 54 (318)
.-.|.+||-|++..+ ...|-|+|.++-...
T Consensus 27 g~~y~lGD~Vlv~s~~~~~yIgkI~~iwe~~ 57 (159)
T cd04715 27 GVEYRLYDDVYVHNGDSEPYIGKIIKIYETA 57 (159)
T ss_pred CEEEeCCCEEEEeCCCCCCEEEEEEEEEEcC
Confidence 345899999999864 678999999999864
No 72
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=21.75 E-value=1.3e+02 Score=23.31 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEeCCceeeeEEEEEEecCC-eeeEEEEecCCCCCcceeeecCcc
Q 021037 27 LFSEGERVLAYHGPCIYEAKVQKAELRKK-EWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 27 ~f~~ge~v~~~~~~~~y~Akil~~~~~~~-~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
.|++||.|+.-..|.-.=..|..+...+. ...|.++|.+=+ =--||.+++
T Consensus 1 mf~~GD~VVh~~~Gv~~i~~i~~~~~~~~~~~yy~L~~~~~~---~i~vPv~~~ 51 (98)
T PF02559_consen 1 MFKIGDYVVHPNHGVGRIEGIEEIEFGGEKQEYYVLEYADDD---TIYVPVDNA 51 (98)
T ss_dssp T--TTSEEEETTTEEEEEEEEEEEECTTEEEEEEEEEECCCE---EEEEECCCG
T ss_pred CCCCCCEEEECCCceEEEEEEEEEeeCCeeEEEEEEEECCCC---EEEEEcCCh
Confidence 48999988776555432233444443333 346667777644 245666554
No 73
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=20.95 E-value=2.1e+02 Score=23.98 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=31.2
Q ss_pred CCCCCCCCEEEEEeC--Cc----eeeeEEEEEEecCCeeeEEEEecCCC---CCcceeee
Q 021037 25 SSLFSEGERVLAYHG--PC----IYEAKVQKAELRKKEWRYYVHYLGWN---KNWDEWVG 75 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~--~~----~y~Akil~~~~~~~~~~Y~VHY~Gwn---~r~DEWV~ 75 (318)
-..|++||.|+.++. +. +|.|=-. +.++||+|=..-. -+--+|+=
T Consensus 40 ~~~f~~GDlvLflpt~~~~~~~~~~~af~~------~~~~YFL~~~s~~~~~~~~~~w~v 93 (129)
T PF10377_consen 40 FRNFQVGDLVLFLPTRNHNNKKQPWAAFNV------GCPHYFLHEDSIAANELKRREWIV 93 (129)
T ss_pred EecCCCCCEEEEEecCCCCccccceEEeeC------CCceEEEecccchhccCCCCCEEE
Confidence 357999999999885 22 3666322 6789999998873 22346765
Done!