Query 021037
Match_columns 318
No_of_seqs 167 out of 586
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 11:49:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021037.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021037hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2f5j_A Mortality factor 4-like 100.0 2.3E-52 7.9E-57 368.7 12.9 168 150-317 3-175 (181)
2 2y0n_A MALE-specific lethal 3 100.0 1.6E-49 5.3E-54 358.8 14.1 163 151-313 6-207 (211)
3 3oa6_A MALE-specific lethal 3 100.0 5.8E-29 2E-33 200.8 9.0 75 25-99 17-101 (110)
4 2f5k_A MORF-related gene 15 is 100.0 2.1E-28 7.3E-33 195.8 9.0 75 25-99 20-94 (102)
5 3m9q_A Protein MALE-specific l 99.9 3.6E-28 1.2E-32 193.9 10.1 74 24-97 16-99 (101)
6 3m9p_A MALE-specific lethal 3 99.9 6.8E-28 2.3E-32 194.4 9.0 76 24-99 16-101 (110)
7 2lrq_A Protein MRG15, NUA4 com 99.9 8.6E-29 2.9E-33 192.6 0.0 73 25-97 10-82 (85)
8 3e9g_A Chromatin modification- 99.9 1.2E-26 4.2E-31 190.7 8.6 75 25-99 5-117 (130)
9 2k3y_A Chromatin modification- 99.9 5.4E-26 1.8E-30 190.2 10.1 73 26-98 8-118 (136)
10 2lcc_A AT-rich interactive dom 99.9 7.3E-23 2.5E-27 156.0 6.6 64 25-88 3-70 (76)
11 2rnz_A Histone acetyltransfera 99.9 3.9E-22 1.3E-26 157.1 9.3 78 1-80 1-78 (94)
12 2ro0_A Histone acetyltransfera 99.9 3.5E-22 1.2E-26 157.2 8.4 59 22-80 18-76 (92)
13 2eko_A Histone acetyltransfera 99.8 6.9E-21 2.4E-25 148.3 6.3 57 24-80 6-67 (87)
14 2bud_A Males-absent on the fir 99.8 2.3E-20 8E-25 145.8 6.5 55 30-84 17-75 (92)
15 1wgs_A MYST histone acetyltran 99.8 8.2E-20 2.8E-24 153.2 9.3 57 25-81 10-69 (133)
16 2eqm_A PHD finger protein 20-l 99.4 3.2E-13 1.1E-17 105.4 9.4 66 16-83 7-76 (88)
17 3sd4_A PHD finger protein 20; 99.1 1.3E-10 4.4E-15 86.5 8.4 54 25-80 10-66 (69)
18 3h8z_A FragIle X mental retard 98.5 1.9E-07 6.7E-12 77.3 7.2 54 26-83 59-118 (128)
19 4a4f_A SurviVal of motor neuro 98.0 1.6E-05 5.6E-10 57.8 7.2 57 23-83 4-62 (64)
20 1mhn_A SurviVal motor neuron p 97.8 5.4E-05 1.9E-09 54.1 6.3 54 27-84 3-58 (59)
21 1wjq_A KIAA1798 protein; MBT d 97.7 8E-05 2.7E-09 59.7 7.3 56 23-82 9-69 (107)
22 2equ_A PHD finger protein 20-l 97.7 7.5E-05 2.6E-09 56.0 6.5 54 25-84 7-61 (74)
23 3s6w_A Tudor domain-containing 97.6 0.00017 5.9E-09 50.4 6.2 51 27-81 1-53 (54)
24 1g5v_A SurviVal motor neuron p 97.5 0.00026 8.9E-09 54.8 7.4 54 26-83 9-64 (88)
25 3p8d_A Medulloblastoma antigen 97.5 0.00023 8E-09 52.3 6.1 53 25-83 4-57 (67)
26 2xk0_A Polycomb protein PCL; t 97.3 0.00044 1.5E-08 50.6 6.1 57 19-82 7-64 (69)
27 2eqj_A Metal-response element- 97.1 0.0011 3.6E-08 48.4 6.5 45 24-70 10-55 (66)
28 2m0o_A PHD finger protein 1; t 97.0 0.0019 6.6E-08 48.1 7.1 44 26-71 25-69 (79)
29 4hcz_A PHD finger protein 1; p 97.0 0.0011 3.7E-08 47.0 5.4 50 26-80 2-52 (58)
30 3qii_A PHD finger protein 20; 97.0 0.0012 4E-08 50.6 6.0 54 24-83 18-72 (85)
31 2d9t_A Tudor domain-containing 97.0 0.0017 6E-08 48.8 6.6 55 25-83 7-63 (78)
32 3pnw_C Tudor domain-containing 97.0 0.0018 6.1E-08 48.7 6.6 55 26-84 16-72 (77)
33 2biv_A SCML2 protein, sex COMB 97.0 0.0017 5.7E-08 59.2 7.6 52 26-81 170-226 (243)
34 2ldm_A Uncharacterized protein 95.8 0.00021 7E-09 54.5 0.0 51 26-82 5-56 (81)
35 2l8d_A Lamin-B receptor; DNA b 96.7 0.0051 1.7E-07 44.5 7.0 53 25-82 7-61 (66)
36 2dig_A Lamin-B receptor; tudor 96.7 0.005 1.7E-07 44.7 6.9 52 25-81 10-63 (68)
37 2r58_A Polycomb protein SCM; M 96.6 0.0042 1.4E-07 57.2 7.4 53 26-82 142-199 (265)
38 2e5p_A Protein PHF1, PHD finge 96.4 0.0044 1.5E-07 45.0 4.9 43 26-70 8-51 (68)
39 3fdr_A Tudor and KH domain-con 96.3 0.012 4.1E-07 45.3 7.3 54 26-84 26-81 (94)
40 2e5q_A PHD finger protein 19; 96.3 0.0035 1.2E-07 44.9 3.7 47 25-73 5-52 (63)
41 2biv_A SCML2 protein, sex COMB 95.9 0.02 6.8E-07 52.1 8.0 53 25-81 60-117 (243)
42 3fdt_A Chromobox protein homol 95.8 0.016 5.6E-07 41.1 5.4 38 42-79 3-41 (59)
43 2r58_A Polycomb protein SCM; M 95.8 0.024 8.3E-07 52.2 7.9 49 25-77 32-83 (265)
44 1oz2_A Lethal(3)malignant brai 95.8 0.017 5.7E-07 54.9 7.0 53 25-81 250-307 (331)
45 1oz2_A Lethal(3)malignant brai 95.7 0.02 7E-07 54.3 7.4 53 25-81 146-203 (331)
46 3i91_A Chromobox protein homol 95.5 0.019 6.6E-07 39.9 4.9 38 43-80 4-42 (54)
47 1pfb_A Polycomb protein; chrom 95.5 0.02 7E-07 39.9 4.8 36 45-80 7-42 (55)
48 3h91_A Chromobox protein homol 95.4 0.022 7.5E-07 39.6 4.9 38 43-80 4-42 (54)
49 1pdq_A Polycomb protein; methy 95.4 0.027 9.2E-07 41.8 5.6 42 39-80 17-59 (72)
50 3h6z_A Polycomb protein SFMBT; 95.4 0.028 9.5E-07 55.4 7.2 53 25-81 374-431 (447)
51 3lwe_A M-phase phosphoprotein 95.4 0.016 5.3E-07 41.6 4.0 39 42-80 4-43 (62)
52 2diq_A Tudor and KH domain-con 95.1 0.023 8E-07 45.0 4.9 54 26-84 31-86 (110)
53 3ut1_A Lethal(3)malignant brai 95.1 0.041 1.4E-06 52.0 7.2 53 25-81 245-302 (324)
54 3f2u_A Chromobox protein homol 95.1 0.031 1.1E-06 39.0 4.8 34 46-79 7-40 (55)
55 2k1b_A Chromobox protein homol 95.0 0.03 1E-06 41.6 4.8 40 41-80 20-60 (73)
56 3mts_A Histone-lysine N-methyl 95.0 0.029 9.9E-07 40.5 4.6 35 46-80 5-39 (64)
57 3g7l_A Chromo domain-containin 95.0 0.039 1.3E-06 39.4 5.1 40 41-80 6-47 (61)
58 2dnv_A Chromobox protein homol 94.9 0.025 8.6E-07 40.7 4.1 36 46-81 15-50 (64)
59 1wjr_A KIAA1617 protein; MBT d 94.9 0.028 9.7E-07 46.1 4.7 52 26-81 10-68 (127)
60 3f70_A Lethal(3)malignant brai 94.8 0.056 1.9E-06 53.4 7.5 54 25-82 364-422 (456)
61 2kvm_A Chromobox protein homol 94.8 0.039 1.3E-06 40.9 4.9 35 46-80 18-52 (74)
62 2d9u_A Chromobox protein homol 94.8 0.044 1.5E-06 40.6 5.2 36 46-81 15-50 (74)
63 1ri0_A Hepatoma-derived growth 94.7 0.038 1.3E-06 44.1 4.9 60 23-84 15-78 (110)
64 1q3l_A Heterochromatin protein 94.7 0.042 1.4E-06 40.4 4.7 40 40-79 14-54 (69)
65 2gfu_A DNA mismatch repair pro 94.4 0.098 3.4E-06 43.0 7.0 63 22-85 17-87 (134)
66 1ap0_A Modifier protein 1; chr 94.4 0.056 1.9E-06 39.9 5.0 38 42-79 13-51 (73)
67 4hae_A CDY-like 2, chromodomai 94.2 0.096 3.3E-06 39.6 5.9 41 40-80 21-63 (81)
68 2l89_A PWWP domain-containing 94.2 0.18 6.1E-06 40.0 7.8 62 24-87 2-72 (108)
69 2rsn_A Chromo domain-containin 94.2 0.15 5.2E-06 37.9 6.9 40 41-80 20-61 (75)
70 1h3z_A Hypothetical 62.8 kDa p 94.0 0.1 3.5E-06 41.3 6.1 61 25-87 4-75 (109)
71 2rso_A Chromatin-associated pr 93.9 0.47 1.6E-05 36.6 9.5 38 43-80 31-72 (92)
72 3feo_A MBT domain-containing p 93.8 0.12 4.2E-06 50.7 7.4 53 25-81 360-417 (437)
73 3ut1_A Lethal(3)malignant brai 93.3 0.16 5.4E-06 48.0 7.1 52 26-81 142-198 (324)
74 2daq_A WHSC1L1 protein, isofor 93.0 0.086 3E-06 41.7 4.1 60 23-84 4-72 (110)
75 3qby_A Hepatoma-derived growth 92.3 0.087 3E-06 40.8 3.2 56 26-83 4-63 (94)
76 4b9w_A TDRD1, tudor domain-con 91.9 0.37 1.3E-05 41.9 7.1 54 26-84 64-119 (201)
77 2qqr_A JMJC domain-containing 91.9 0.77 2.6E-05 37.1 8.3 54 26-84 4-58 (118)
78 4fu6_A PC4 and SFRS1-interacti 91.8 0.091 3.1E-06 44.1 2.9 58 25-84 20-81 (153)
79 2hqx_A P100 CO-activator tudor 91.7 0.48 1.6E-05 42.2 7.8 54 26-84 64-118 (246)
80 3ntk_A Maternal protein tudor; 91.7 0.27 9.3E-06 41.6 5.9 51 26-83 46-98 (169)
81 2dnt_A Chromodomain protein, Y 91.5 0.15 5.3E-06 38.0 3.6 35 46-80 18-53 (78)
82 4b9x_A TDRD1, tudor domain-con 91.2 0.51 1.7E-05 41.7 7.4 54 26-84 64-119 (226)
83 1g6z_A CLR4 protein; transfera 91.2 0.085 2.9E-06 38.6 1.9 35 46-80 13-49 (70)
84 3pfs_A Bromodomain and PHD fin 90.7 0.36 1.2E-05 41.0 5.5 63 23-86 32-123 (158)
85 3llr_A DNA (cytosine-5)-methyl 90.2 0.22 7.5E-06 42.1 3.8 59 24-84 13-76 (154)
86 3db3_A E3 ubiquitin-protein li 89.6 0.84 2.9E-05 38.6 6.8 44 24-67 7-68 (161)
87 2wac_A CG7008-PA; unknown func 89.2 0.71 2.4E-05 39.9 6.5 52 27-84 51-104 (218)
88 3ask_A E3 ubiquitin-protein li 88.9 0.83 2.8E-05 40.9 6.7 43 26-68 1-52 (226)
89 2xdp_A Lysine-specific demethy 88.2 0.59 2E-05 38.0 4.8 54 25-83 4-58 (123)
90 1khc_A DNA cytosine-5 methyltr 87.6 0.71 2.4E-05 38.6 5.1 59 24-84 8-71 (147)
91 3bdl_A Staphylococcal nuclease 85.6 1.7 5.9E-05 43.6 7.7 53 26-83 410-463 (570)
92 3f70_A Lethal(3)malignant brai 85.2 1.5 5E-05 43.3 6.7 53 26-82 152-209 (456)
93 3dlm_A Histone-lysine N-methyl 84.6 1.6 5.3E-05 38.7 5.9 52 26-80 7-59 (213)
94 3l42_A Peregrin; transcription 83.1 1.6 5.6E-05 35.7 5.1 60 26-86 4-92 (130)
95 3db3_A E3 ubiquitin-protein li 80.1 3.7 0.00013 34.7 6.3 31 26-56 91-128 (161)
96 3h8z_A FragIle X mental retard 78.7 4.6 0.00016 32.9 6.4 48 30-83 4-53 (128)
97 3mea_A SAGA-associated factor 77.5 2.4 8.3E-05 36.6 4.5 40 26-66 115-156 (180)
98 3nrw_A Phage integrase/site-sp 77.4 21 0.00072 27.0 11.2 90 182-294 4-93 (117)
99 2eqk_A Tudor domain-containing 74.3 2.5 8.6E-05 32.1 3.3 55 25-84 19-75 (85)
100 2b2y_A CHD-1, chromodomain-hel 71.7 1.8 6.3E-05 37.4 2.3 34 48-81 49-82 (187)
101 3mp6_A MBP, SGF29, maltose-bin 70.6 5.5 0.00019 39.0 5.8 38 25-65 455-494 (522)
102 1x3p_A Cpsrp43; chromo-2 domai 69.0 0.41 1.4E-05 33.2 -2.0 33 46-80 5-39 (54)
103 1ssf_A Transformation related 67.9 4.3 0.00015 34.1 3.6 35 28-65 9-45 (156)
104 3mwy_W Chromo domain-containin 67.4 3 0.0001 43.4 3.3 27 54-80 69-95 (800)
105 2fhd_A RAD9 homolog, DNA repai 66.6 9 0.00031 32.0 5.3 38 31-68 9-51 (153)
106 3ask_A E3 ubiquitin-protein li 65.0 12 0.00039 33.5 6.1 37 18-54 66-109 (226)
107 2b2y_C CHD-1, chromodomain-hel 61.2 1.3 4.6E-05 35.5 -0.6 53 28-80 13-81 (115)
108 2a7y_A Hypothetical protein RV 59.6 7 0.00024 29.4 3.1 48 27-76 5-55 (83)
109 2ee4_A RHO GTPase activating p 58.5 62 0.0021 27.5 9.7 140 156-301 26-204 (209)
110 3dlm_A Histone-lysine N-methyl 58.4 24 0.00083 31.1 6.9 47 25-77 156-202 (213)
111 2kkp_A Phage integrase; SAM-li 54.9 56 0.0019 23.8 7.8 88 182-294 4-92 (117)
112 2h1e_A Chromo domain protein 1 54.0 4.8 0.00016 34.4 1.6 26 56-81 46-71 (177)
113 2epb_A Chromodomain-helicase-D 52.6 20 0.0007 25.5 4.6 24 56-79 32-55 (68)
114 2kd1_A DNA integration/recombi 49.3 53 0.0018 24.1 6.9 88 182-294 3-90 (118)
115 1pbw_A Rhogap domain, phosphat 44.9 1.5E+02 0.005 25.3 9.9 142 156-301 24-200 (216)
116 3h6z_A Polycomb protein SFMBT; 44.9 41 0.0014 32.8 6.8 50 26-81 155-209 (447)
117 3feo_A MBT domain-containing p 43.5 65 0.0022 31.3 8.0 53 26-81 253-313 (437)
118 1nz9_A Transcription antitermi 40.5 44 0.0015 22.6 4.6 40 26-65 3-43 (58)
119 1tx4_A P50-rhogap; complex (GT 40.3 1.6E+02 0.0055 24.5 10.1 18 282-299 181-198 (198)
120 2kkv_A Integrase; protein stru 40.1 1.1E+02 0.0038 22.5 9.3 86 182-294 4-89 (121)
121 2g3r_A Tumor suppressor P53-bi 37.6 63 0.0021 25.9 5.6 34 29-65 6-41 (123)
122 2fmm_A Chromobox protein homol 37.6 52 0.0018 23.8 4.8 35 44-80 18-52 (74)
123 1ow3_A RHO-GTPase-activating p 33.1 2.4E+02 0.0082 24.4 10.1 143 155-301 60-236 (242)
124 3msx_B RHO GTPase-activating p 31.4 2.3E+02 0.0077 23.6 10.9 21 279-299 181-201 (201)
125 3nnf_A CURA; non-HAEM Fe(II)/a 31.1 24 0.00081 33.1 2.5 45 27-72 237-281 (344)
126 3iug_A RHO/CDC42/RAC GTPase-ac 30.1 2.6E+02 0.0089 23.9 9.4 145 156-305 36-225 (229)
127 3fk2_A Glucocorticoid receptor 29.6 2.8E+02 0.0095 24.1 10.4 19 283-301 227-245 (246)
128 2xdp_A Lysine-specific demethy 29.6 99 0.0034 24.8 5.6 36 27-65 64-100 (123)
129 2qqr_A JMJC domain-containing 27.6 1.3E+02 0.0044 23.9 5.9 35 28-65 64-99 (118)
130 3mlq_E Transcription-repair co 26.2 80 0.0027 22.6 4.1 51 26-80 1-53 (71)
131 3eap_A RHO GTPase-activating p 26.1 3.4E+02 0.012 23.9 9.5 17 284-300 242-258 (271)
132 2e6z_A Transcription elongatio 25.2 36 0.0012 23.5 2.0 29 24-52 4-33 (59)
133 2ee1_A Chromodomain helicase-D 24.6 76 0.0026 22.4 3.7 33 46-78 16-49 (64)
134 2jvv_A Transcription antitermi 24.0 1.2E+02 0.0041 25.1 5.6 41 25-65 125-166 (181)
135 2kj8_A Putative prophage CPS-5 23.7 2.2E+02 0.0074 20.8 10.5 87 182-294 2-88 (118)
136 2h1e_A Chromo domain protein 1 23.6 64 0.0022 27.3 3.7 35 46-80 125-164 (177)
137 2b2y_A CHD-1, chromodomain-hel 23.0 58 0.002 27.8 3.3 34 46-79 135-171 (187)
138 1dtc_A Acetyl-delta-toxin; NMR 22.8 60 0.0021 18.8 2.2 21 278-298 3-23 (26)
139 2lcd_A AT-rich interactive dom 27.0 20 0.00067 28.6 0.0 39 24-65 3-41 (118)
140 1y71_A Kinase-associated prote 20.5 1.6E+02 0.0055 23.8 5.2 26 27-52 7-32 (130)
141 3i3c_A Chromobox protein homol 20.5 1E+02 0.0035 22.4 3.7 34 44-79 25-58 (75)
142 2in0_A Endonuclease PI-MTUI; h 20.3 2.5E+02 0.0084 21.9 6.5 36 29-64 26-62 (139)
No 1
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=100.00 E-value=2.3e-52 Score=368.74 Aligned_cols=168 Identities=37% Similarity=0.651 Sum_probs=148.5
Q ss_pred cceEEEecChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCC--cchhhHHHHHHHHHHHHHhhcCcc
Q 021037 150 EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDG--MMTDSIGEILKGIRCYFDKALPVM 227 (318)
Q Consensus 150 ~~~~~i~iP~~Lk~iLvdD~~~i~~~~~L~~LPa~~tV~~IL~~y~~~~~~~~~--~~~~~~~e~~~gl~~yFn~~L~~~ 227 (318)
+++++|+||+.||++|||||++|+++++|++|||++||++||++|+++...... .....+.|+++||+.|||++||.+
T Consensus 3 ~~~i~i~iP~~Lk~~LvdDw~~Itk~~~L~~LP~~~~V~~IL~~Y~~~~~~~~~~~~~~~~~~Ev~~Gl~~YFd~~L~~~ 82 (181)
T 2f5j_A 3 RVEVKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQ 82 (181)
T ss_dssp ---CCCCCCGGGHHHHHHHHHHHHTSCEEECSSCSSBHHHHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCHHHHHHHHHHHHHHHhCCCeeeCCCCCcHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHcccc
Confidence 456889999999999999999999999999999999999999999999876442 123478999999999999999999
Q ss_pred cCChhhHhhHhHhhc--CCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHchhcccc-cCCC
Q 021037 228 LLYKKERQQYHDLVV--DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYD 304 (318)
Q Consensus 228 LLY~~ER~QY~~~~~--~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n~~~~f~-~dY~ 304 (318)
|||++||+||.++++ ++.+||++||++|||||||+||+||+.++||+++++.|+.++++||+||++|.++||. ++|+
T Consensus 83 LLY~~ER~Qy~~ll~~~p~~~~S~iYGa~HLLRLfvkLPell~~t~~d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~ 162 (181)
T 2f5j_A 83 LLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYE 162 (181)
T ss_dssp SCCGGGHHHHHHHHHHSTTCCHHHHCBHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEE
T ss_pred cCcHHHHHHHHHHHHhCCCCCHHHHcCHHHHHHHHHHhHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhcC
Confidence 999999999999986 3468999999999999999999999999999999999999999999999999999996 9999
Q ss_pred CCChhhhhccCCC
Q 021037 305 GSRVSEGKGKGKD 317 (318)
Q Consensus 305 ~~~~eY~~~a~~~ 317 (318)
+++|+|++.|++.
T Consensus 163 ~~~~eY~~~~~~~ 175 (181)
T 2f5j_A 163 VAPPEYHRKAVLE 175 (181)
T ss_dssp ECCHHHHC-----
T ss_pred CCCHHHHHHHhhh
Confidence 9999999999864
No 2
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-49 Score=358.75 Aligned_cols=163 Identities=38% Similarity=0.614 Sum_probs=142.3
Q ss_pred ceEEEecChhHHHHHHHHHHHhhhCCceeeCCCCCCHHHHHHHHHHhhhccC--------------------------Cc
Q 021037 151 KLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKD--------------------------GM 204 (318)
Q Consensus 151 ~~~~i~iP~~Lk~iLvdD~~~i~~~~~L~~LPa~~tV~~IL~~y~~~~~~~~--------------------------~~ 204 (318)
++++|+||..||++|||||++||++++|++|||++||++||++|+++..... ..
T Consensus 6 ~~v~i~iP~~Lk~~LvdDw~~Itk~~kLv~LPa~~~V~~IL~~Y~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 85 (211)
T 2y0n_A 6 RTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANERPRHHHVMPHANMNVHYIPAEK 85 (211)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHTSCCEECSSCSSCHHHHHHHHHHHHHHHHHSCC---------------------CTT
T ss_pred ceeEEeCCHHHHHHHHHHHHHHhcCCceEeCCCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccccchhh
Confidence 4688999999999999999999999999999999999999999998865210 01
Q ss_pred chhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcC------------CCCCCcccchHHHHHHHhhhhHHhccCCC
Q 021037 205 MTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVD------------NVSPSTIYGAEHLLRLFVKLPELLAYVNI 272 (318)
Q Consensus 205 ~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~------------~~~~S~iYG~~HLLRL~vkLP~ll~~~~~ 272 (318)
....++|+++||+.|||++||++|||++||+||.++++. +.+||++||++|||||||+||+||+.++|
T Consensus 86 ~~~~~~Ev~~GLr~YFd~~L~~~LLY~~ER~Qy~~~~~~~~~~~~~~~~~~~~~~S~iYGa~HLLRLfvkLPelL~~t~~ 165 (211)
T 2y0n_A 86 NVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSSKYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSF 165 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSCCGGGHHHHHHHHHC--------CCSCCCCGGGTCCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCcHHHHHHHHHHHHhhcccCCcccccCCCCHHHHcCHHHHHHHHHHhHHHHhcCCC
Confidence 134689999999999999999999999999999999842 35899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHchhcccc-cCCCCCChhhhhc
Q 021037 273 EDETLIRLQQKMIDFLKFMQKNQSTFFL-SAYDGSRVSEGKG 313 (318)
Q Consensus 273 d~~~~~~l~~~l~~fL~fL~~n~~~~f~-~dY~~~~~eY~~~ 313 (318)
++++++.|+.++++||+||++|.++||. ++|++++|+|.+.
T Consensus 166 d~~s~~~L~~~l~~fl~fL~~n~~~~F~~~~Y~~~~~~~~~~ 207 (211)
T 2y0n_A 166 SEKNLKALLKHFDLFLRFLAEYHDDFFPESAYVAACEAHYST 207 (211)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTHHHHCCGGGEECC-------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCChhccCCCCHHHHhh
Confidence 9999999999999999999999999997 8999998888764
No 3
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=99.95 E-value=5.8e-29 Score=200.82 Aligned_cols=75 Identities=35% Similarity=0.696 Sum_probs=67.2
Q ss_pred CCCCCCCCEEEEEe-----CCceeeeEEEEEEecCC-----eeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHHH
Q 021037 25 SSLFSEGERVLAYH-----GPCIYEAKVQKAELRKK-----EWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQ 94 (318)
Q Consensus 25 ~~~f~~ge~v~~~~-----~~~~y~Akil~~~~~~~-----~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L~ 94 (318)
...|.+||+||||| |+++|+||||+|...++ +++|+|||.|||++|||||+++||+++|++|+++|++|.
T Consensus 17 k~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~~WDEWV~~drllk~neeN~~~qk~L~ 96 (110)
T 3oa6_A 17 KFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKLA 96 (110)
T ss_dssp -CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHHHH
T ss_pred CcccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCcchhhccChhhhhcCCHHHHHHHHHHH
Confidence 36799999999999 67899999999986532 478999999999999999999999999999999999998
Q ss_pred Hhhcc
Q 021037 95 KKQGA 99 (318)
Q Consensus 95 ~~~~~ 99 (318)
+++.+
T Consensus 97 ~~~~~ 101 (110)
T 3oa6_A 97 RKAVA 101 (110)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 87743
No 4
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=99.95 E-value=2.1e-28 Score=195.79 Aligned_cols=75 Identities=51% Similarity=0.977 Sum_probs=71.3
Q ss_pred CCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHHHHhhcc
Q 021037 25 SSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQKKQGA 99 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L~~~~~~ 99 (318)
.+.|.+||+|+|++++.+|+|+|++|+..++..+|||||.|||+||||||+++||+++|++|+++|++|.++++.
T Consensus 20 ~~~f~vGekVl~~~~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~L~~~~~~ 94 (102)
T 2f5k_A 20 KPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDTNLQKQRELQKANQE 94 (102)
T ss_dssp SCSCCTTCEEEEESSSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHHHHHHHHHHHHHHHH
T ss_pred CcccCCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHHHHHHHHHHHHHHHh
Confidence 367999999999999999999999999999999999999999999999999999999999999999999988743
No 5
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=99.95 E-value=3.6e-28 Score=193.91 Aligned_cols=74 Identities=35% Similarity=0.583 Sum_probs=68.4
Q ss_pred CCCCCCCCCEEEEEe-----CCceeeeEEEEEEec-----CCeeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHH
Q 021037 24 NSSLFSEGERVLAYH-----GPCIYEAKVQKAELR-----KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQAL 93 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~-----~~~~y~Akil~~~~~-----~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L 93 (318)
..+.|++||+|+||| ++.+|+|||++|... .+...|+|||.|||+||||||+++||+++|++|+++|++|
T Consensus 16 ~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~eeN~~~q~~L 95 (101)
T 3m9q_A 16 ETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEENRQLQREL 95 (101)
T ss_dssp CCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHHHHHHHHHH
Confidence 447799999999999 589999999999985 4578999999999999999999999999999999999999
Q ss_pred HHhh
Q 021037 94 QKKQ 97 (318)
Q Consensus 94 ~~~~ 97 (318)
.+++
T Consensus 96 ~~~~ 99 (101)
T 3m9q_A 96 AEAA 99 (101)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 9876
No 6
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=99.95 E-value=6.8e-28 Score=194.38 Aligned_cols=76 Identities=34% Similarity=0.669 Sum_probs=68.4
Q ss_pred CCCCCCCCCEEEEEeCC-----ceeeeEEEEEEecCC-----eeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHH
Q 021037 24 NSSLFSEGERVLAYHGP-----CIYEAKVQKAELRKK-----EWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQAL 93 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~-----~~y~Akil~~~~~~~-----~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L 93 (318)
..+.|.+||+|+||+++ .+|+|||++|+..++ ...|||||.|||+||||||+++||+++|++|+++|++|
T Consensus 16 ~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~eeN~~~q~~L 95 (110)
T 3m9p_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTDENRRLQRKL 95 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCHHHHHHHHHH
T ss_pred CCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCHHHHHHHHHH
Confidence 34789999999999985 999999999998542 48999999999999999999999999999999999999
Q ss_pred HHhhcc
Q 021037 94 QKKQGA 99 (318)
Q Consensus 94 ~~~~~~ 99 (318)
.+++.+
T Consensus 96 ~~~a~~ 101 (110)
T 3m9p_A 96 ARKAVA 101 (110)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 988854
No 7
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=99.90 E-value=8.6e-29 Score=192.56 Aligned_cols=73 Identities=51% Similarity=0.996 Sum_probs=69.8
Q ss_pred CCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChHhHHHHHHHHHhh
Q 021037 25 SSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVMKQQALQKKQ 97 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~~qk~L~~~~ 97 (318)
.+.|.+||+|+|+|++.+|+|+|++|+..++..+|||||.|||+||||||+++||+++|++|+++|++|.+++
T Consensus 10 ~~~~~~Gekv~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~en~~~q~~l~~~~ 82 (85)
T 2lrq_A 10 NTLFVDGERVLCFHGPLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQC 82 (85)
Confidence 4679999999999999999999999999888899999999999999999999999999999999999998766
No 8
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=99.93 E-value=1.2e-26 Score=190.67 Aligned_cols=75 Identities=39% Similarity=0.768 Sum_probs=66.2
Q ss_pred CCCCCCCCEEEEEeCCceeeeEEEEEEecC--------------------------------------CeeeEEEEecCC
Q 021037 25 SSLFSEGERVLAYHGPCIYEAKVQKAELRK--------------------------------------KEWRYYVHYLGW 66 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~~~y~Akil~~~~~~--------------------------------------~~~~Y~VHY~Gw 66 (318)
.|.|.+||+|+|||+|.+|+|||++|.... +++.|||||+||
T Consensus 5 ~p~f~~gE~VlcfHg~~~YeAKIl~i~d~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GW 84 (130)
T 3e9g_A 5 EQEFALGGRCLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKCFFIHYQGW 84 (130)
T ss_dssp --CCCTTCEEEEEETTEEEEEEEEEEEETTTTEEEECC--------------CCBCCCTTCCCCTTTTTSCEEEEEETTS
T ss_pred cccccCCCEEEEEeCCcceeeEEEEeeCCCcceeecccccccccccccccccccccccccccCchhhccCceEEEEeCCC
Confidence 368999999999999999999999995311 235899999999
Q ss_pred CCCcceeeecCcccccChHhHHHHHHHHHhhcc
Q 021037 67 NKNWDEWVGVDRLLKHTEENVMKQQALQKKQGA 99 (318)
Q Consensus 67 n~r~DEWV~~~ri~k~~~en~~~qk~L~~~~~~ 99 (318)
|++|||||+++||+++|++|+++|++|.+++.+
T Consensus 85 n~~WDEWV~e~rvlk~~eeN~~lqk~L~~~a~~ 117 (130)
T 3e9g_A 85 KSSWDEWVGYDRIRAYNEENIAMKKRLANEAKE 117 (130)
T ss_dssp CGGGCEEEETTTEECSSHHHHHHHHHHHHHHHH
T ss_pred CCChhhccCHhhhhccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988754
No 9
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=99.93 E-value=5.4e-26 Score=190.19 Aligned_cols=73 Identities=42% Similarity=0.846 Sum_probs=65.9
Q ss_pred CCCCCCCEEEEEeCCceeeeEEEEEEec------C-----------------------C---------eeeEEEEecCCC
Q 021037 26 SLFSEGERVLAYHGPCIYEAKVQKAELR------K-----------------------K---------EWRYYVHYLGWN 67 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~~y~Akil~~~~~------~-----------------------~---------~~~Y~VHY~Gwn 67 (318)
+.|++|++|+|||++++|+||||++... + + +.+|||||+|||
T Consensus 8 ~~f~~gekvl~~hg~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GWn 87 (136)
T 2k3y_A 8 QEFALGGRVLAFHGPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGWK 87 (136)
T ss_dssp GSCCTTSEEEEECSSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEECCTTSC
T ss_pred cccCCCCEEEEEECCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEEEeCCcC
Confidence 5799999999999999999999999951 1 1 229999999999
Q ss_pred CCcceeeecCcccccChHhHHHHHHHHHhhc
Q 021037 68 KNWDEWVGVDRLLKHTEENVMKQQALQKKQG 98 (318)
Q Consensus 68 ~r~DEWV~~~ri~k~~~en~~~qk~L~~~~~ 98 (318)
+||||||+++||+++|++|+++|++|.++++
T Consensus 88 ~rwDEWV~~dRil~~~eeN~~~qKeL~~kak 118 (136)
T 2k3y_A 88 SSWDEWVGYDRIRAYNEENIAMKKRLANEAG 118 (136)
T ss_dssp GGGCEEEETTTEEESCHHHHHHHHHHHHHSC
T ss_pred CcceeeecHhhhhhCCHhHhHHHHHHHHHHH
Confidence 9999999999999999999999999998773
No 10
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=99.87 E-value=7.3e-23 Score=155.95 Aligned_cols=64 Identities=34% Similarity=0.632 Sum_probs=59.6
Q ss_pred CCCCCCCCEEEEEeC----CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccChHhHH
Q 021037 25 SSLFSEGERVLAYHG----PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENVM 88 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~----~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~~ 88 (318)
...|.+|++|+|+++ +.+|+|+|++++..++...|||||.|||+||||||+++||++.+++|++
T Consensus 3 ~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~~~~ 70 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGLE 70 (76)
T ss_dssp CCCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCSSCC
T ss_pred ccccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccchhh
Confidence 357999999999986 6999999999999999999999999999999999999999999988864
No 11
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.87 E-value=3.9e-22 Score=157.11 Aligned_cols=78 Identities=26% Similarity=0.345 Sum_probs=64.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 1 MGSSSKDDTGSDGDTSSRDTPPSNSSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
||||------|.|-.. +........|.+|++|+|++++.+|+|+|++++..++...|||||.|||+||||||+.+||.
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~vG~kv~v~~~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 1 MGSSHHHHHHSSGLVP--RGSHMSVDDIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp CCCCCCCCCSCCCSSC--SSCSSCGGGCCTTEEEEEECSSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred CCccccccccccCCcc--CCCccccccccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 7887665554444332 33344446799999999999999999999999999999999999999999999999999996
No 12
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.86 E-value=3.5e-22 Score=157.23 Aligned_cols=59 Identities=24% Similarity=0.350 Sum_probs=55.1
Q ss_pred CCCCCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 22 PSNSSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 22 ~~~~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
......|.+|++|+|++++.+|+|+||+++..++...|||||.|||+||||||+.+||.
T Consensus 18 ~~~~~~~~vG~kv~v~~~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 18 INSVDDIIIKCQCWVQKNDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp CSCTTSCCTTCEEEEEETTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred ccccccccCCCEEEEEECCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 34456799999999999999999999999999999999999999999999999999996
No 13
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.9e-21 Score=148.30 Aligned_cols=57 Identities=26% Similarity=0.380 Sum_probs=53.4
Q ss_pred CCCCCCCCCEEEEEe-----CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 24 NSSLFSEGERVLAYH-----GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~-----~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
..+.|.+|++|+|++ ++.+|+|+|++++..++..+|||||.|||+||||||+.+||.
T Consensus 6 ~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 67 (87)
T 2eko_A 6 SGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLD 67 (87)
T ss_dssp SSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBC
T ss_pred ccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHcc
Confidence 346799999999998 789999999999998889999999999999999999999996
No 14
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=99.81 E-value=2.3e-20 Score=145.80 Aligned_cols=55 Identities=24% Similarity=0.491 Sum_probs=50.2
Q ss_pred CCCEEEEEe-CCceeeeEEEEEEecC---CeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 30 EGERVLAYH-GPCIYEAKVQKAELRK---KEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 30 ~ge~v~~~~-~~~~y~Akil~~~~~~---~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
.|++|+|+| +|.+|+|+|++++..+ +..+|||||.|||+||||||+.+||++.++
T Consensus 17 ~~e~vlc~~~dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~ 75 (92)
T 2bud_A 17 PDKIYFIRREDGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNAD 75 (92)
T ss_dssp TTSCEEEECTTSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHH
T ss_pred CCCEEEEEeCCCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcc
Confidence 378999999 7999999999999876 567999999999999999999999998764
No 15
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=99.80 E-value=8.2e-20 Score=153.24 Aligned_cols=57 Identities=30% Similarity=0.522 Sum_probs=52.1
Q ss_pred CCCCCCCCEEEEEeC-CceeeeEEEEEEec--CCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 25 SSLFSEGERVLAYHG-PCIYEAKVQKAELR--KKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~-~~~y~Akil~~~~~--~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
.+.|.+|++|+|+|+ +.+|+|+||+++.. .+...|||||.|||+||||||+.+||..
T Consensus 10 ~~~~~vGe~v~~~~~d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~~ 69 (133)
T 1wgs_A 10 EVTVEIGETYLCRRPDSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLAL 69 (133)
T ss_dssp CCCCCTTSEEEEEETTTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCC
T ss_pred ccccCCCCEEEEEeCCCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhccc
Confidence 357999999999997 89999999999974 5789999999999999999999999964
No 16
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=99.45 E-value=3.2e-13 Score=105.45 Aligned_cols=66 Identities=26% Similarity=0.513 Sum_probs=52.8
Q ss_pred CCCCCCCCC-CCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccccC
Q 021037 16 SSRDTPPSN-SSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKHT 83 (318)
Q Consensus 16 ~~~~~~~~~-~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~~ 83 (318)
.+.+++|.. ...|++|.+|.|.+. +.+|+|+|+.++..+ ..|+|||.||+++|||||+.+ +|++..
T Consensus 7 ~~~~~~~~~~~~~F~vGmkLEA~D~~~~~~~a~i~~v~~~~--~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 7 GMSKKPPNRPGITFEIGARLEALDYLQKWYPSRIEKIDYEE--GKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp SCTTSCCSCSSCCCCSSCEEEEECTTSCEEEEEEEEEETTT--TEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred CcccCCCCCCcCcCCCCCEEEEEcCCCCeeEEEEEEEeccC--CEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 344444443 468999999988874 678999999888654 389999999999999999987 888754
No 17
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=99.15 E-value=1.3e-10 Score=86.54 Aligned_cols=54 Identities=24% Similarity=0.484 Sum_probs=44.3
Q ss_pred CCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccc
Q 021037 25 SSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLL 80 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~ 80 (318)
+..|++|.++.|.+. +.+|.|+|++|+..+ ..++|||.||+++||+|++.+ +|+
T Consensus 10 ~~~F~vGmkLEa~d~~~p~~~AtV~~v~~~~--~~~~VhfdGw~~~~D~W~~~dS~~i~ 66 (69)
T 3sd4_A 10 GISFEVGAQLEARDRLKNWYPAHIEDIDYEE--GKVLIHFKRWNHRYDEWFCWDSPYLR 66 (69)
T ss_dssp TCCCSTTCEEEEECTTSCEEEEEEEEEETTT--TEEEEEETTSCGGGCEEEETTCTTEE
T ss_pred CCCcCCCCEEEEEECCCCccccEEEEEeccC--CEEEEEeCCCCCCCCEEEcCCCCCee
Confidence 367999999988764 445999999997543 478999999999999999975 454
No 18
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=98.51 E-value=1.9e-07 Score=77.31 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=43.8
Q ss_pred CCCCCCCEEEEEeCC------ceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 26 SLFSEGERVLAYHGP------CIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~------~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
..|.+|++|-|++.. -||.|+|.+++. ..|+|+|.||...|+|||+.+||+..|
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg----~f~~V~y~~~~~~~~EiV~~~rlR~~n 118 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKG----DFYVIEYAACDATYNEIVTLERLRPVN 118 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEET----TEEEEEETTC----CEEECGGGEEECC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC----CEEEEEEcCCCCCcceEEehhheEeCC
Confidence 679999999999852 599999999983 499999999999999999999998665
No 19
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=98.01 E-value=1.6e-05 Score=57.84 Aligned_cols=57 Identities=14% Similarity=0.243 Sum_probs=46.8
Q ss_pred CCCCCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 23 SNSSLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
++...+++|+.|+|.+ +|.||.|+|+++...++ .|.|+|.+|..+ |.|+.++|...+
T Consensus 4 ~~~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~--~~~V~fvdYGn~--e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 4 QPTHSWKVGDKCMAVWSEDGQCYEAEIEEIDEENG--TAAITFAGYGNA--EVTPLLNLKPVE 62 (64)
T ss_dssp CCSSCCCTTCEEEEECTTTSSEEEEEEEEEETTTT--EEEEEETTTTEE--EEEEGGGEECCS
T ss_pred CcCCCCCCCCEEEEEECCCCCEEEEEEEEEcCCCC--EEEEEEEecCCE--EEEeHHHcEeCC
Confidence 3346799999999987 59999999999986433 699999999664 899999887654
No 20
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.77 E-value=5.4e-05 Score=54.06 Aligned_cols=54 Identities=22% Similarity=0.401 Sum_probs=45.1
Q ss_pred CCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 27 LFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 27 ~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
.|++|+.|++.+ +|.||.|+|+++.... ..|.|+|.+|..+ |-|+.++|...++
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~--~~~~V~f~DYGn~--e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDFKR--ETCVVVYTGYGNR--EEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEETTT--TEEEEEETTTTEE--EEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcCCC--CEEEEEEEcCCCE--EEEcHHHeeCCCC
Confidence 589999999987 5899999999996532 4799999999875 8899998887653
No 21
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=97.72 E-value=8e-05 Score=59.73 Aligned_cols=56 Identities=23% Similarity=0.422 Sum_probs=46.3
Q ss_pred CCCCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 23 SNSSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
.++..|++|-++.+.+. ..++.|.|.+|. +....|||.||+.++|.|+..+ .|+..
T Consensus 9 ~p~~~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw~~~~D~W~~~dSpdIhPV 69 (107)
T 1wjq_A 9 KPPHGFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHPV 69 (107)
T ss_dssp CCSSSCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSSCGGGCEEECTTCSSCEET
T ss_pred CCcccCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCCCCcCCEEEECCCCCcccC
Confidence 34567999999999885 468999999994 3479999999999999999874 67653
No 22
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.70 E-value=7.5e-05 Score=56.03 Aligned_cols=54 Identities=20% Similarity=0.170 Sum_probs=45.9
Q ss_pred CCCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 25 SSLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 25 ~~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
+..|.+|+.|++.| +|.||+|+|.+|... ..|.|.|.++|. |-|+.++|....+
T Consensus 7 ~~~~kvGd~clA~wsDg~~Y~A~I~~v~~~---~~~~V~f~Dyn~---e~v~~~~lrplp~ 61 (74)
T 2equ_A 7 GFDFKAGEEVLARWTDCRYYPAKIEAINKE---GTFTVQFYDGVI---RCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCCTTCEEEEECSSSSEEEEEEEEESTT---SSEEEEETTSCE---EEECGGGEECCCG
T ss_pred CCCCCCCCEEEEECCCCCEEEEEEEEECCC---CEEEEEEecCCe---EEecHHHCeeCCh
Confidence 46799999999988 699999999999643 379999999955 8999999987654
No 23
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=97.55 E-value=0.00017 Score=50.38 Aligned_cols=51 Identities=16% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 27 LFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 27 ~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
.+++|+.|+|.+ +|.||.|+|+++...+ ..|.|+|.+|..+ |-|+.++|..
T Consensus 1 ~wk~G~~c~A~~s~Dg~wYrA~I~~i~~~~--~~~~V~fvDYGn~--e~v~~~~lrp 53 (54)
T 3s6w_A 1 MWKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGNY--EEVLLSNIKP 53 (54)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEC--CC--SEEEEEETTTCCE--EEEEGGGEEC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEccCCe--EEEeHHHEEE
Confidence 478999999987 6999999999987542 4789999999875 8888887753
No 24
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.52 E-value=0.00026 Score=54.80 Aligned_cols=54 Identities=22% Similarity=0.420 Sum_probs=46.3
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
..+.+|+.|++.+ +|.||.|+|+++.... ..|.|.|.+|..+ |-|+.++|+...
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~--~~~~V~fiDYGN~--E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDFKR--ETCVVVYTGYGNR--EEQNLSDLLSPI 64 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEETTT--TEEEEEETTTCCE--EEEEGGGCBCCC
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecCCC--CEEEEEEecCCCE--EEEcHHHcccCC
Confidence 4689999999987 6999999999997632 3799999999886 889999998765
No 25
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.47 E-value=0.00023 Score=52.28 Aligned_cols=53 Identities=26% Similarity=0.206 Sum_probs=42.3
Q ss_pred CCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 25 SSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
++.|.+||+|+|.|+ +.+|+|+|..|... ..|-|.|.+ ---|-|....|.+..
T Consensus 4 ~~~~~vGd~vmArW~D~~yYpA~I~si~~~---~~Y~V~F~d---G~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 4 SSEFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD---GVVQTVKHIHVKAFS 57 (67)
T ss_dssp -CCCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT---SCEEEEEGGGEEECC
T ss_pred CcccccCCEEEEEcCCCCEeeEEEEEECCC---CeEEEEEeC---CceEEEeHHHcccCC
Confidence 468999999999996 78999999999866 369999988 334777777776554
No 26
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=97.33 E-value=0.00044 Score=50.59 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCCCCCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccccc
Q 021037 19 DTPPSNSSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 19 ~~~~~~~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
|++|++...|.+||.|+|.|. |..|.+.|++.. ...++|+|..=.+ -||...+|.+.
T Consensus 7 ~~a~~pa~~~~~geDVL~rw~DG~fYLGtIVd~~----~~~ClV~FeD~S~---~Wv~~kdi~kl 64 (69)
T 2xk0_A 7 VAAPSPAVTYALQEDVFIKCNDGRFYLGTIIDQT----SDQYLIRFDDQSE---QWCEPDKLRKL 64 (69)
T ss_dssp SSSSCCCCCCCTTCEEEEECTTSCEEEEEEEEEC----SSCEEEEETTCCE---EEECTTTEECS
T ss_pred CCCCCcccccccCCeEEEEecCCCEEEEEEEecC----CceEEEEecCCcc---eeeeHHHHHhh
Confidence 334444478999999999984 999999995543 3589999988666 56666666553
No 27
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=97.15 E-value=0.0011 Score=48.37 Aligned_cols=45 Identities=24% Similarity=0.479 Sum_probs=36.5
Q ss_pred CCCCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCc
Q 021037 24 NSSLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNW 70 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~ 70 (318)
+...|.+||-|+|.| +|..|+|+|.+|....+ .|+|.|-.=.++|
T Consensus 10 ~~~~f~vGddVLA~wtDGl~Y~gtI~~V~~~~g--tC~V~F~D~s~~w 55 (66)
T 2eqj_A 10 PACKFEEGQDVLARWSDGLFYLGTIKKINILKQ--SCFIIFEDSSKSW 55 (66)
T ss_dssp CCCCSCTTCEEEEECTTSCEEEEEEEEEETTTT--EEEEEETTTEEEE
T ss_pred ccccccCCCEEEEEEccCcEEEeEEEEEccCCc--EEEEEEccCCEEE
Confidence 346799999999987 59999999999987544 7899987655543
No 28
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=97.05 E-value=0.0019 Score=48.14 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=36.6
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcc
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWD 71 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~D 71 (318)
..|.+||-|+|.| +|..|.++|++|.... ..|+|+|..=.+.|=
T Consensus 25 ~~f~eGeDVLarwsDGlfYLGTI~kV~~~~--e~ClV~F~D~S~~W~ 69 (79)
T 2m0o_A 25 PRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQFLV 69 (79)
T ss_dssp CCCCTTCEEEBCCTTSCCCEEEEEEEETTT--TEEEEEETTSCEEEE
T ss_pred ceeccCCEEEEEecCCCEEeEEEEEeccCC--CEEEEEEcCCCeEEE
Confidence 6799999999988 5999999999998754 479999987666443
No 29
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.04 E-value=0.0011 Score=47.00 Aligned_cols=50 Identities=18% Similarity=0.153 Sum_probs=39.6
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+.|.+||-|+|.| +|..|.++|++|.... ..|+|+|-.=.+. ||.-.+|.
T Consensus 2 ~~f~~GedVLarwsDG~fYlGtI~~V~~~~--~~clV~F~D~s~~---W~~~kdi~ 52 (58)
T 4hcz_A 2 PRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQF---LVLWKDIS 52 (58)
T ss_dssp CSCCTTCEEEEECTTSCEEEEEEEEEETTT--TEEEEEETTSCEE---EEEGGGEE
T ss_pred CccccCCEEEEEecCCCEEeEEEEEEecCC--CEEEEEEcCCCeE---EEEhHHcc
Confidence 5799999999988 5999999999998653 4899999877764 44444443
No 30
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.03 E-value=0.0012 Score=50.64 Aligned_cols=54 Identities=26% Similarity=0.205 Sum_probs=42.3
Q ss_pred CCCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 24 NSSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
.+..|.+||+|+|.|+ +.+|+|+|..|... ..|-|-|.+ ---+-|....|.+..
T Consensus 18 ~~~~f~vGd~VlArW~D~~yYPAkI~sV~~~---~~YtV~F~D---G~~etvk~~~IKp~~ 72 (85)
T 3qii_A 18 GSSEFQINEQVLACWSDCRFYPAKVTAVNKD---GTYTVKFYD---GVVQTVKHIHVKAFS 72 (85)
T ss_dssp ---CCCTTCEEEEECTTSCEEEEEEEEECTT---SEEEEEETT---SCEEEEEGGGEEECC
T ss_pred CCcccccCCEEEEEeCCCCEeeEEEEEECCC---CeEEEEEeC---CCeEEecHHHcccCC
Confidence 4578999999999995 78999999999876 369999988 344778887776654
No 31
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.98 E-value=0.0017 Score=48.84 Aligned_cols=55 Identities=15% Similarity=0.206 Sum_probs=45.0
Q ss_pred CCCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 25 SSLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 25 ~~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
...+.+|+.|++.+ ++.||.|+|+++... ...|.|.|.+|... |-|+.++|+...
T Consensus 7 ~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~--~~~~~V~fiDYGN~--e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 7 GKVWKPGDECFALYWEDNKFYRAEVEALHSS--GMTAVVKFTDYGNY--EEVLLSNIKPVQ 63 (78)
T ss_dssp CCCCCTTCEEEEECTTTCCEEEEEEEEECSS--SSEEEEEETTTTEE--EEEEGGGEEECC
T ss_pred ccCCCcCCEEEEEECCCCCEEEEEEEEEeCC--CCEEEEEEEcCCCe--EEEcHHHeEeCC
Confidence 34689999999987 689999999998643 35799999998764 889998887654
No 32
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.97 E-value=0.0018 Score=48.73 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=44.5
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
..+.+|+.|+|.+ +|.||.|+|+++.... ..|.|.|.+|.. -|-|+.++|+....
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~--~~~~V~fvDYGN--~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHSSG--MTAVVKFIDYGN--YEEVLLSNIKPIQT 72 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECTTS--SEEEEEETTTCC--EEEEEGGGEECC--
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeCCC--CEEEEEEEcCCC--eEEEeHHHeEECCh
Confidence 3589999999987 6999999999996542 478899999977 58899998887654
No 33
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=96.96 E-value=0.0017 Score=59.24 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=44.5
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
..|++|-++.+.+. ..++.|.|.+|.. ..++|||.||..++|.|+..+ +|+.
T Consensus 170 ~~F~~GmKLEavD~~~p~~icvATV~~v~g----~rl~v~fDgw~~~~D~W~~~dSp~I~P 226 (243)
T 2biv_A 170 NNFKVGMKLEAIDKKNPYLICPATIGDVKG----DEVHITFDGWSGAFDYWCKYDSRDIFP 226 (243)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred ccccCCCEEEEEccCCCCeEEEEEEEEecC----CEEEEEECCCCCcCCEEEeCCCCCeec
Confidence 57999999999875 5789999999973 368999999999999999975 5554
No 34
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.82 E-value=0.00021 Score=54.49 Aligned_cols=51 Identities=25% Similarity=0.202 Sum_probs=42.2
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccccc
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
..|.+||.|++.| ++.||+|+|.++... ..|.|.|.+ .-.|-|+.++|.+.
T Consensus 5 ~~~kvGd~clAkwsDg~wY~A~I~~v~~~---~~y~V~F~D---Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 5 SEFQINEQVLASWSDSRFYPAKVTAVNKD---GTYTVKFYD---GVVQTVKHIHVKAF 56 (81)
Confidence 4699999999987 689999999999743 279999998 34588998888754
No 35
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=96.73 E-value=0.0051 Score=44.49 Aligned_cols=53 Identities=17% Similarity=0.229 Sum_probs=41.9
Q ss_pred CCCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccccc
Q 021037 25 SSLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKH 82 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~ 82 (318)
+-.|++||.|++.|. ...|+|+|+++. ...+.|.|-|.. --+|=+.+..|.+.
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKd---gT~e~L~~kDIkp~ 61 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKD---GTELALKESDIRLQ 61 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETT---SCEEEEEGGGEECS
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecC---CCEEeechhccccc
Confidence 457999999999996 479999999999 445789999987 34566666666543
No 36
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.72 E-value=0.005 Score=44.67 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=40.9
Q ss_pred CCCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 25 SSLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
+-.|++||.|++.|. ...|+|+|+.+. ...+.|.|-|.. --+|=+.+..|.+
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKd---gT~e~L~~kDIKp 63 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKD---GTELELKENDIKS 63 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTT---SCEEEEETTTEEC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecC---CCEEEechhcccc
Confidence 357999999999996 579999999999 445789999987 3456666666543
No 37
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=96.60 E-value=0.0042 Score=57.25 Aligned_cols=53 Identities=23% Similarity=0.388 Sum_probs=45.1
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
..|++|-++.+.+. ..++-|.|.+|.. ....|||.||...+|.|+..+ +|+..
T Consensus 142 ~~F~vGMKLEavD~~np~~icvATV~~v~g----~rl~v~fDGw~~~~D~W~~~~Sp~I~Pv 199 (265)
T 2r58_A 142 NLFKVGQKLEAVDKKNPQLICCATVDAIKD----DQIHVTFDGWRGAFDYWCNYRSRDIFPA 199 (265)
T ss_dssp CCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred cccccCcEEEeccCCCCCCEEEEEEEEecC----CEEEEEeCCCCCcCCEEEECCCCCeecC
Confidence 46999999999874 6799999999973 479999999999999999975 67653
No 38
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.41 E-value=0.0044 Score=45.03 Aligned_cols=43 Identities=19% Similarity=0.198 Sum_probs=35.5
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCc
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNW 70 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~ 70 (318)
+.|.+|+-|||.| +|..|.++|.+|.... ..++|+|..=.+.|
T Consensus 8 ~~f~eGqdVLarWsDGlfYlGtV~kV~~~~--~~ClV~FeD~s~~w 51 (68)
T 2e5p_A 8 PRLWEGQDVLARWTDGLLYLGTIKKVDSAR--EVCLVQFEDDSQFL 51 (68)
T ss_dssp CCCCTTCEEEEECTTSSEEEEEEEEEETTT--TEEEEEETTTEEEE
T ss_pred cccccCCEEEEEecCCcEEEeEEEEEecCC--cEEEEEEccCCeee
Confidence 6899999999988 5999999999998653 47999987755543
No 39
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=96.30 E-value=0.012 Score=45.30 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=44.2
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
....+|+.|.+.+ +|.||.|+|+++... ..+.|+|.+|... |.|+.++|....+
T Consensus 26 ~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~---~~~~V~fvDyGn~--e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGDN--GDCPLKDLRALRS 81 (94)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTT---SCEEEEETTTCCE--EEECGGGCEECCG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEcCCCe--EEEEHHHhhhcCH
Confidence 4678999999987 799999999999632 3689999999774 8899988876543
No 40
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.29 E-value=0.0035 Score=44.88 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=37.6
Q ss_pred CCCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCccee
Q 021037 25 SSLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEW 73 (318)
Q Consensus 25 ~~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEW 73 (318)
+..|.+|+-|||.| +|..|.++|.+|... ...|+|+|-.=.+.|=-|
T Consensus 5 ~~~f~eGqdVLarWsDGlfYlgtV~kV~~~--~~~ClV~FeD~s~~wv~~ 52 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWTDGLYYLGKIKRVSSS--KQSCLVTFEDNSKYWVLW 52 (63)
T ss_dssp CCCCCTTCEEEEECTTSCEEEEEECCCCST--TSEEEEEETTSCEEEEEG
T ss_pred ccceecCCEEEEEecCCCEEEEEEEEEecC--CCEEEEEEccCceeEEEe
Confidence 46799999999998 599999999988765 347999998766654333
No 41
>2biv_A SCML2 protein, sex COMB on midleg-like protein 2; MBT, malignant brain tumor, transcription factor; 1.7A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 PDB: 1oi1_A 2vyt_A* 2p0k_A
Probab=95.93 E-value=0.02 Score=52.09 Aligned_cols=53 Identities=21% Similarity=0.142 Sum_probs=44.6
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
...|++|-++.+.+. ..++-|.|+++.. ....|||.||...+|.|+..+ +|+.
T Consensus 60 ~~~f~vGmKLEa~D~~~~~~~~vATV~~v~g----~~l~l~~dG~d~~~DfW~~~~S~~I~P 117 (243)
T 2biv_A 60 VNDFKVGMKLEARDPRNATSVCIATVIGITG----ARLRLRLDGSDNRNDFWRLVDSPDIQP 117 (243)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEET----TEEEEEETTSCSSSCEEEETTCTTEEC
T ss_pred cccccCCCEEEEecCCCCCcEEEEEEEEEeC----CEEEEEECCCCCCCCEeecCCCCcccc
Confidence 467999999999986 5789999999953 378999999999999999874 5554
No 42
>3fdt_A Chromobox protein homolog 5; chromobox homolog5, CBX5, structural GENO structural genomics consortium, SGC, centromere, nucleus, phosphoprotein; HET: M3L; 2.00A {Homo sapiens}
Probab=95.78 E-value=0.016 Score=41.05 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=34.1
Q ss_pred eeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 42 IYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 42 ~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
-|+. +|++.+..+|...|+|+..||....+.|.|++.|
T Consensus 3 ey~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 41 (59)
T 3fdt_A 3 EYVVEKVLDRRVVKGQVEYLLKWKGFSEEHNTWEPEKNL 41 (59)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred eEEEEEEEEEEEeCCeEEEEEEEeCCCcccCCccchhHC
Confidence 3444 7999998899999999999999999999999998
No 43
>2r58_A Polycomb protein SCM; MBT repeat, sex COMB on midleg, DI-methyl lysine, regulator, developmental protein, metal-binding, nucleus; HET: MLY; 2.00A {Drosophila melanogaster} PDB: 2r57_A* 2r5a_A* 2r5m_A*
Probab=95.78 E-value=0.024 Score=52.16 Aligned_cols=49 Identities=22% Similarity=0.157 Sum_probs=42.5
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD 77 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ 77 (318)
...|++|-++.+.+. ..++-|.|.+|... .++|||.||...+|.|+..+
T Consensus 32 ~~~F~vGMKLEavDp~~~~~icvATV~~v~g~----~l~l~~DG~d~~~DfW~~~~ 83 (265)
T 2r58_A 32 NNDFKIGMKLEALDPRNVTSTCIATVVGVLGS----RLRLRLDGSDSQNDFWRLVD 83 (265)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCSSCCEEEETT
T ss_pred ccccccCCEeEEecCCCCCCEEEEEEEEEeCC----EEEEEeCCCCCcCCEeEeCC
Confidence 467999999999886 46799999999743 88999999999999999864
No 44
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.75 E-value=0.017 Score=54.86 Aligned_cols=53 Identities=25% Similarity=0.441 Sum_probs=44.9
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
+..|++|-++.+.+. ..++.|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 250 ~~~F~~gmKLEavD~~~p~~ic~AtV~~v~~----~~l~v~fDgw~~~~d~w~~~dS~~I~P 307 (331)
T 1oz2_A 250 PHSFLVNMKLEAVDRRNPALIRVASVEDVED----HRIKIHFDGWSHGYDFWIDADHPDIHP 307 (331)
T ss_dssp CCCCCTTCEEEEECSSSTTCEEEEEEEEECS----SEEEEEETTBCGGGCEEEETTCTTEEC
T ss_pred ccccccCceeEeecccCCCcEEeeEEEEEcC----CEEEEEeCCCCCcCCEEEECCCCCccc
Confidence 467999999999874 6789999999963 369999999999999999875 6664
No 45
>1oz2_A Lethal(3)malignant brain tumor-like protein; propeller, transcription repressor, three malignant brain TU repeats, transcription; HET: MES; 1.55A {Homo sapiens} SCOP: b.34.9.3 b.34.9.3 b.34.9.3 PDB: 1oyx_A* 1oz3_A* 3oq5_A* 2rhi_A* 2rhx_A* 2rjd_A 2rjc_A 2rje_A* 2rjf_A* 3uwn_A* 2pqw_A* 3p8h_A* 2rhu_A* 2rhy_A* 2rhz_A* 2ri3_A* 2ri2_A* 2ri5_A*
Probab=95.70 E-value=0.02 Score=54.26 Aligned_cols=53 Identities=21% Similarity=0.391 Sum_probs=44.8
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
...|++|-++.+.+. ..++.|.|.+|... .+.|||.||...+|.|+..+ .|+.
T Consensus 146 ~~~F~vGmKLEavD~~np~~icvATV~~v~g~----r~~v~~Dg~~~~~D~w~~~~S~~I~P 203 (331)
T 1oz2_A 146 PLGFQVGMKLEAVDRMNPSLVCVASVTDVVDS----RFLVHFDNWDDTYDYWCDPSSPYIHP 203 (331)
T ss_dssp CTTCCTTCEEEEECTTSTTCEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred ccccccccEEEeccCCCCCcEEEEEEEEeeCC----EEEEEeCCCCCccCEEEecCCCCccC
Confidence 467999999999984 68999999998743 68999999999999999874 5553
No 46
>3i91_A Chromobox protein homolog 8; chromobox homolog 8, CBX8, structural genomics structural genomics consortium, SGC, chromatin regulator, N phosphoprotein, repressor; HET: M3L; 1.55A {Homo sapiens} SCOP: b.34.13.2 PDB: 3gv6_A* 3i90_A*
Probab=95.54 E-value=0.019 Score=39.88 Aligned_cols=38 Identities=26% Similarity=0.707 Sum_probs=34.3
Q ss_pred eee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 43 YEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 43 y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|+. +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3i91_A 4 FAAEALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred EEEEEEEEEEEeCCcEEEEEEEeCCCcccCcccchhHCC
Confidence 444 79998888999999999999999999999999986
No 47
>1pfb_A Polycomb protein; chromatin, histone methylation, polycomb, chromodomain, peptide binding protein; HET: M3L; 1.40A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.45 E-value=0.02 Score=39.91 Aligned_cols=36 Identities=25% Similarity=0.612 Sum_probs=33.2
Q ss_pred eEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 45 AKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 45 Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
.+|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 7 E~Il~~r~~~g~~~YlVKWkgy~~~~~TWEp~~~l~ 42 (55)
T 1pfb_A 7 EKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 42 (55)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEEeCCeEEEEEEEcCCCCccCcEeEHHHCC
Confidence 379998888999999999999999999999999886
No 48
>3h91_A Chromobox protein homolog 2; human chromobox homolog 2, CBX2, structural genomics, structural genomics consortium, SGC, chromatin regulator, D binding, nucleus; HET: M3L; 1.50A {Homo sapiens} SCOP: b.34.13.2 PDB: 2k28_A 3i8z_A
Probab=95.44 E-value=0.022 Score=39.62 Aligned_cols=38 Identities=26% Similarity=0.654 Sum_probs=34.3
Q ss_pred eee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 43 YEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 43 y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|+. +|++.+..+|...|+|+..||....+-|.|++.|.
T Consensus 4 y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 42 (54)
T 3h91_A 4 FAAECILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENIL 42 (54)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGBC
T ss_pred eEEEEEEEEEEeCCcEEEEEEEeCCCCcCCCeecHhHCC
Confidence 444 79998888999999999999999999999999987
No 49
>1pdq_A Polycomb protein; methyllysine, chromodomain, polycomb, lysine methylation, trimethyllysine, cation-PI, chromo, structural protein; HET: M3L; 1.76A {Drosophila melanogaster} SCOP: b.34.13.2
Probab=95.43 E-value=0.027 Score=41.77 Aligned_cols=42 Identities=26% Similarity=0.586 Sum_probs=36.2
Q ss_pred CCceeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 39 GPCIYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 39 ~~~~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+...|+. +|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 17 ~~~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~nTWEP~enL~ 59 (72)
T 1pdq_A 17 VDLVYAAEKIIQKRVKKGVVEYRVKWKGWNQRYNTWEPEVNIL 59 (72)
T ss_dssp -CEEEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred CCceEEEEEEEEEEEeCCcEEEEEEECCCCCccCeecchHHCC
Confidence 3455665 79999988999999999999999999999999885
No 50
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=95.38 E-value=0.028 Score=55.44 Aligned_cols=53 Identities=19% Similarity=0.366 Sum_probs=44.9
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
+..|++|-++.+.+. .++.-|.|.+|.. ..-.|||.||+..+|+|+..+ .|+.
T Consensus 374 ~~~F~~gmkLEAvD~~np~~icvATV~~v~~----~~~~i~fDgw~~~~d~w~~~~S~dI~P 431 (447)
T 3h6z_A 374 DHGFEVGMSLECADLMDPRLVCVATVARVVG----RLLKVHFDGWTDEYDQWLDCESADIYP 431 (447)
T ss_dssp CCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEECTTSCGGGCEEEETTCTTEEC
T ss_pred CCccccCCEEEeecCCCCCcEEEEEEeEecC----CEEEEEeCCCCCcCCEEEecCCCCccc
Confidence 467999999999874 7889999999984 478999999999999999874 5554
No 51
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=95.37 E-value=0.016 Score=41.61 Aligned_cols=39 Identities=21% Similarity=0.363 Sum_probs=34.1
Q ss_pred eeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 42 IYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 42 ~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
.|+. +|++.+..+|...|+|+..||....+.|.|++.|.
T Consensus 4 ~y~VE~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 43 (62)
T 3lwe_A 4 VFEVEKILDMKTEGGKVLYKVRWKGYTSDDDTWEPEIHLE 43 (62)
T ss_dssp SCCEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEHHHHT
T ss_pred eEEEEEEEEEEEcCCeEEEEEEEeCCCCcCCCeeeHhHhh
Confidence 3444 78888888999999999999999999999999883
No 52
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=95.14 E-value=0.023 Score=44.95 Aligned_cols=54 Identities=15% Similarity=0.063 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
....+|+.|++.+ ++.||.|+|+++... ..+.|+|.+|... |.|+.++|....+
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~---~~~~V~fvDyGn~--e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTLEN---GNLDLYFVDFGDN--GDCPLKDLRALRS 86 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCCSS---SCEEEEETTTCCE--EEECGGGCEECCH
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEeCCCe--EEEehHHhhcCcH
Confidence 4578999999976 689999999988643 3789999999875 8999999987764
No 53
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=95.08 E-value=0.041 Score=52.00 Aligned_cols=53 Identities=25% Similarity=0.463 Sum_probs=44.5
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
+..|++|-++.+.+. .++.-|.|.+|. +..-.|||.||...+|.|+..+ .|+.
T Consensus 245 ~~~F~~gmkLEAvD~~~p~licvATV~~v~----g~~l~v~fDgw~~~~d~w~~~~S~dI~P 302 (324)
T 3ut1_A 245 PHGFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGWNNCYDYWIDADSPDIHP 302 (324)
T ss_dssp CCCCCTTCEEEEECSSSTTCEEEEEEEEEC----SSEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred cccCCCCCeeeccCCCCCCceeEEEEEEec----CCEEEEEeCCCCCCCCEEEeCCCCCeec
Confidence 467999999999874 678999999885 3478999999999999999974 5654
No 54
>3f2u_A Chromobox protein homolog 1; human chromobox homolog 1, CBX1, structural genomics, struct genomics consortium, SGC, centromere, nucleus; 1.80A {Homo sapiens} PDB: 3tzd_A* 2l11_A* 3dm1_A*
Probab=95.08 E-value=0.031 Score=38.98 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=32.0
Q ss_pred EEEEEEecCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 46 KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 46 kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
+|++.+..+|...|+|+..||....+-|.|++.|
T Consensus 7 ~Il~~r~~~g~~~YlVkWkGy~~~~~TWEp~~nl 40 (55)
T 3f2u_A 7 KVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 40 (55)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGC
T ss_pred EEEEEEEeCCeEEEEEEEEeCCCccCCeeEHHHC
Confidence 7888888889999999999999999999999998
No 55
>2k1b_A Chromobox protein homolog 7; alpha/beta protein, chromatin regulator, nucleus, repressor, transcription, transcription regulation; NMR {Homo sapiens} PDB: 2l12_A* 2l1b_A*
Probab=95.02 E-value=0.03 Score=41.57 Aligned_cols=40 Identities=23% Similarity=0.656 Sum_probs=34.1
Q ss_pred ceeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 41 CIYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 41 ~~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
..|+. +|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 20 ~eyeVEkIld~r~~~g~~~YlVKWkGy~~~~~TWEp~enL~ 60 (73)
T 2k1b_A 20 QVFAVESIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 60 (73)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEECTTCCGGGCCEEETTSCS
T ss_pred ceEEEEEEEEEEEcCCcEEEEEEECCCCcccCeecchHHCC
Confidence 34444 68888888889999999999999999999999886
No 56
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=95.02 E-value=0.029 Score=40.54 Aligned_cols=35 Identities=14% Similarity=0.236 Sum_probs=32.3
Q ss_pred EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+|++.+..+|...|+|++.||....+-|.|++.|.
T Consensus 5 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 5 YLCDYKKIREQEYYLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEEEECSSCEEEEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEEEeCCeEEEEEEEecCCCcCCcEeEHHHCC
Confidence 68888888899999999999999999999999994
No 57
>3g7l_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, silencing, cell cycle, chromosome partition, DNA-binding, nucleus; HET: M3L; 2.20A {Schizosaccharomyces pombe}
Probab=94.97 E-value=0.039 Score=39.37 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=34.5
Q ss_pred ceeee-EEEEEEecCCee-eEEEEecCCCCCcceeeecCccc
Q 021037 41 CIYEA-KVQKAELRKKEW-RYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 41 ~~y~A-kil~~~~~~~~~-~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
..|+. +|++.+..+|.. .|+|+..||....+.|.|++.|.
T Consensus 6 ~ey~VE~Il~~r~~~g~~~~YlVkWkGy~~~~~TWEp~~nl~ 47 (61)
T 3g7l_A 6 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 47 (61)
T ss_dssp CEEEEEEEEEEEECTTSCEEEEEEETTSCGGGCEEEEGGGGT
T ss_pred cEEEEEEEEEEEEECCCEEEEEEEEeCCCCcCCceeeHhHCC
Confidence 44555 799988888877 99999999999999999999984
No 58
>2dnv_A Chromobox protein homolog 8; chromo domain, histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.34.13.2
Probab=94.93 E-value=0.025 Score=40.75 Aligned_cols=36 Identities=25% Similarity=0.682 Sum_probs=31.6
Q ss_pred EEEEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 46 KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 46 kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
+||+.+..+|...|+|++.||....+.|.|++.|..
T Consensus 15 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~l~~ 50 (64)
T 2dnv_A 15 ALLKRRIRKGRMEYLVKWKGWSQKYSTWEPEENILD 50 (64)
T ss_dssp CEEEEEESSSSEEEEECCSSCCCSSCCEEETTTCCC
T ss_pred EEEEEEEeCCcEEEEEEECCCCcccCCccCHhHCCC
Confidence 577777778889999999999999999999998863
No 59
>1wjr_A KIAA1617 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=94.87 E-value=0.028 Score=46.13 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=43.4
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCC--CcceeeecC--cccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNK--NWDEWVGVD--RLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~--r~DEWV~~~--ri~k 81 (318)
..|++|-++.+.+. ...+-|.|+++.. ..-.|||.||.. .+|-|+..+ +|+.
T Consensus 10 ~~f~~GmKLEa~D~~~p~~~~vAtV~~v~g----~rl~l~~dG~~~~~~~D~W~~~~s~~I~P 68 (127)
T 1wjr_A 10 DLITVGSLIELQDSQNPFQYWIVSVIENVG----GRLRLRYVGLEDTESYDQWLFYLDYRLRP 68 (127)
T ss_dssp HHCCTTCEEEEECSSCSSCEEEEECCCEET----TEEEECBTTCSSCCSSCEEEETTCSSCBC
T ss_pred hhccCCCEeEEecCCCCCcEEEEEEeeeeC----CEEEEEecCCCCCCCCCEeEeCCCCCccc
Confidence 57999999999874 5788899998874 488999999999 899999864 5554
No 60
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=94.81 E-value=0.056 Score=53.41 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=45.0
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
...|++|-++.+.+. ..+.-|.|.+|.. ..-.|||.||...+|+|+..+ .|+..
T Consensus 364 ~~~F~~GMKLEAvD~~np~~icvATV~~v~~----~~l~i~fDgw~~~~d~w~~~~S~~I~Pv 422 (456)
T 3f70_A 364 NHGFKVGMKLEAVDLMEPRLICVATVKRVVH----RLLSIHFDGWDSEYDQWVDCESPDIYPV 422 (456)
T ss_dssp CCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEECT
T ss_pred ccccccCCEEEeecCCCCCcEEEEEEEEecC----CEEEEEeCCCCCCCCeEeecCCCCcccc
Confidence 356999999999875 6789999999883 377999999999999999864 66543
No 61
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=94.81 E-value=0.039 Score=40.90 Aligned_cols=35 Identities=26% Similarity=0.694 Sum_probs=31.9
Q ss_pred EEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+|++.+..+|...|+|.+.||....+.|.|++.|.
T Consensus 18 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~~L~ 52 (74)
T 2kvm_A 18 SIRKKRVRKGKVEYLVKWKGWPPKYSTWEPEEHIL 52 (74)
T ss_dssp EEEEEEEETTEEEEEEEETTSCGGGCEEEETTTCS
T ss_pred EEEEEEEeCCcEEEEEEEcCCCCccCeEeeHHHCC
Confidence 68888888889999999999999999999999886
No 62
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.044 Score=40.62 Aligned_cols=36 Identities=25% Similarity=0.626 Sum_probs=32.4
Q ss_pred EEEEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 46 KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 46 kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
+|++.+..+|..+|+|.+.||....+.|.|++.|..
T Consensus 15 ~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 15 CILSKRLRKGKLEYLVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEEEEEEETTEEEEEEEETTSCTTTCEEEEGGGCCC
T ss_pred EEEEEEEeCCcEEEEEEECCCCCccCccccHHHCCC
Confidence 688888888899999999999999999999998864
No 63
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=94.67 E-value=0.038 Score=44.14 Aligned_cols=60 Identities=17% Similarity=0.274 Sum_probs=46.8
Q ss_pred CCCCCCCCCCEEEEEeCC-ceeeeEEEEEEec---CCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 23 SNSSLFSEGERVLAYHGP-CIYEAKVQKAELR---KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~---~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
.....|.+||.|++.-+| -+++|+|+.+-.. .....|.|.|-|=+.+. ||+.++|..+.+
T Consensus 15 ~~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~a--wv~~~~l~pf~~ 78 (110)
T 1ri0_A 15 NRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETA--FLGPKDLFPYEE 78 (110)
T ss_dssp CCSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEE--EECSTTEECHHH
T ss_pred cccCCCCCCCEEEEEeCCCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEE--EECHHHccchhh
Confidence 344689999999998776 4799999865432 23468999999977654 999999998863
No 64
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=94.66 E-value=0.042 Score=40.37 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=34.3
Q ss_pred Cceeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 40 PCIYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 40 ~~~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
...|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 14 ~~ey~VEkIld~R~~~g~~eYlVKWkGy~~~~~TWEp~enL 54 (69)
T 1q3l_A 14 EEEYAVEKIIDRRVRKGMVEYYLKWKGYPETENTWEPENNL 54 (69)
T ss_dssp --CEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGE
T ss_pred CCcEEEEEEEEEEEECCeEEEEEEEcCCCcccCCccchHHC
Confidence 344554 8999998899999999999999999999999988
No 65
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=94.43 E-value=0.098 Score=42.99 Aligned_cols=63 Identities=24% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCCCCCCCCCCEEEEEeCC-ceeeeEEEEEEec-------CCeeeEEEEecCCCCCcceeeecCcccccChH
Q 021037 22 PSNSSLFSEGERVLAYHGP-CIYEAKVQKAELR-------KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEE 85 (318)
Q Consensus 22 ~~~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~-------~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~e 85 (318)
.+.+..|.+||.|++.-+| -||+|.|+..... .....|.|.|-|=...| -||+..+|+.+++.
T Consensus 17 ~~~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-aWv~~~~l~pf~~~ 87 (134)
T 2gfu_A 17 APTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-GWVSKRLLKPYTGS 87 (134)
T ss_dssp CCSSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-EEECGGGEEESCCT
T ss_pred cCcCCCCCCCCEEEEeecCCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-EEECHHHcccCcch
Confidence 3345789999999997665 5799999876321 22358999999953222 59999999988754
No 66
>1ap0_A Modifier protein 1; chromatin-binding, protein interaction motif, alpha+beta; NMR {Mus musculus} SCOP: b.34.13.2 PDB: 1guw_A*
Probab=94.42 E-value=0.056 Score=39.94 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=33.4
Q ss_pred eeee-EEEEEEecCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 42 IYEA-KVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 42 ~y~A-kil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
.|+. +|++.+..+|...|+|.+.||....+-|.|++.|
T Consensus 13 ey~VE~Il~~r~~~g~~~YlVKWkGy~~~~~TWEp~~nL 51 (73)
T 1ap0_A 13 EYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENL 51 (73)
T ss_dssp CCEEEEEEEEEECSSSEEEEEEEESSSSCCCEEEETTTC
T ss_pred eEEEEEEEEEEEeCCeEEEEEEECCCCCccCcEeeHHHC
Confidence 3443 7888888888999999999999999999999998
No 67
>4hae_A CDY-like 2, chromodomain Y-like protein 2; protein binding, structural genomics consortiu; 2.00A {Homo sapiens}
Probab=94.18 E-value=0.096 Score=39.57 Aligned_cols=41 Identities=24% Similarity=0.619 Sum_probs=34.6
Q ss_pred Cceeee-EEEEEEe-cCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 40 PCIYEA-KVQKAEL-RKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 40 ~~~y~A-kil~~~~-~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+..|+. +||+.+. .+|...|+|.+.||...-|-|.|++.|.
T Consensus 21 ~e~yeVE~Ild~R~~~~g~~~YlVKWkGy~~~~~TWEp~~nl~ 63 (81)
T 4hae_A 21 GDLYEVERIVDKRKNKKGKWEYLIRWKGYGSTEDTWEPEHHLL 63 (81)
T ss_dssp SCEEEEEEEEEEEECTTSCEEEEEEETTCCGGGCEEEEGGGEE
T ss_pred CCEEEEEEEEEeEECCCCeEEEEEEECCCCCCCCeEEeHHHhh
Confidence 667877 7888776 4577899999999999999999998774
No 68
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=94.16 E-value=0.18 Score=39.97 Aligned_cols=62 Identities=15% Similarity=0.235 Sum_probs=48.0
Q ss_pred CCCCCCCCCEEEEEeCC-ceeeeEEEEEEec--------CCeeeEEEEecCCCCCcceeeecCcccccChHhH
Q 021037 24 NSSLFSEGERVLAYHGP-CIYEAKVQKAELR--------KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~--------~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~ 87 (318)
+...|.+||.|++.-+| -+|+|.|+..... .+...|.|.|-| ...| -||+..+|..++++..
T Consensus 2 ~~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg-~~~~-aWv~~~~l~p~~~~~~ 72 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFP-DFNF-AWVKRNSVKPLLDSEI 72 (108)
T ss_dssp CSCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETT-TTEE-EEECGGGEEECCHHHH
T ss_pred CCCcccCCCEEEEEeCCcCCCceEecCcccCcHHHhhccCCCCeEEEEECC-CCCE-EEEchhhceeCCHHHH
Confidence 34579999999998766 4799999886532 235699999999 2222 7999999999997644
No 69
>2rsn_A Chromo domain-containing protein 1; chromodomain, protein-peptide complex, RNA-mediated gene SIL chromosomal protein, methylation; HET: M3L; NMR {Schizosaccharomyces pombe}
Probab=94.15 E-value=0.15 Score=37.86 Aligned_cols=40 Identities=18% Similarity=0.435 Sum_probs=33.1
Q ss_pred ceeee-EEEEEEec-CCeeeEEEEecCCCCCcceeeecCccc
Q 021037 41 CIYEA-KVQKAELR-KKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 41 ~~y~A-kil~~~~~-~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
..|+. +||+.+.. +|...|+|++.||....+-|.|++.|.
T Consensus 20 e~yeVE~Il~~r~~~~g~~~YlVkWkGy~~~~~TWEp~~nl~ 61 (75)
T 2rsn_A 20 DVYEVEDILADRVNKNGINEYYIKWAGYDWYDNTWEPEQNLF 61 (75)
T ss_dssp GCEEEEEEEEEEECSSSCEEEEEEEESSCGGGCEEEEGGGGT
T ss_pred ceEEEEEEEEEEEcCCCcEEEEEEECCCCCcCCeeecHHHcc
Confidence 45665 78887764 567899999999999999999999885
No 70
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=93.99 E-value=0.1 Score=41.31 Aligned_cols=61 Identities=21% Similarity=0.292 Sum_probs=47.2
Q ss_pred CCCCCCCCEEEEEeCC-ceeeeEEEEE---E-------ecCCeeeEEEEecCCCCCcceeeecCcccccChHhH
Q 021037 25 SSLFSEGERVLAYHGP-CIYEAKVQKA---E-------LRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTEENV 87 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~-~~y~Akil~~---~-------~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~en~ 87 (318)
...|.+|+.|++.-.| -+|.|+|++- - ...+...|.|.|-|=+ .+ -||+..+|..+++++.
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~-~~-aWv~~~~l~p~~~~~~ 75 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNK-EY-LWTGSDSLTPLTSEAI 75 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTT-CC-EEEEGGGEEECCHHHH
T ss_pred cccCCCCCEEEEEeCCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCC-CE-EEECHHHeeeCCchHH
Confidence 4579999999998766 5899999842 1 1112568999999966 34 8999999999998753
No 71
>2rso_A Chromatin-associated protein SWI6; chromodomain, silencing, chromosomal protein, Met transcription; NMR {Schizosaccharomyces pombe}
Probab=93.89 E-value=0.47 Score=36.56 Aligned_cols=38 Identities=18% Similarity=0.448 Sum_probs=30.2
Q ss_pred eee-EEEEEEe--cCCeeeEEEEecCCCC-CcceeeecCccc
Q 021037 43 YEA-KVQKAEL--RKKEWRYYVHYLGWNK-NWDEWVGVDRLL 80 (318)
Q Consensus 43 y~A-kil~~~~--~~~~~~Y~VHY~Gwn~-r~DEWV~~~ri~ 80 (318)
|+. +||+.+. .+|...|+|++.||.. ..+-|.|+..|.
T Consensus 31 y~VE~Il~~r~~~~~g~~~YlVkWkGy~~~~~~TWEP~~nl~ 72 (92)
T 2rso_A 31 YVVEKVLKHRMARKGGGYEYLLKWEGYDDPSDNTWSSEADCS 72 (92)
T ss_dssp CCEEEEEEEEECTTSSCEEEEEEETTCCCCTTSEEECGGGGG
T ss_pred EEEEEEEEEEeecCCCEEEEEEEEccCCCcccCccccHHHHh
Confidence 444 6777765 4577899999999984 788999999884
No 72
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=93.77 E-value=0.12 Score=50.71 Aligned_cols=53 Identities=25% Similarity=0.439 Sum_probs=44.8
Q ss_pred CCCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 25 SSLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
...|++|-++.+.+. ..+..|.|.+|.. ....|||.||...+|.|+..+ .|+.
T Consensus 360 ~~~F~~GMKLEAvD~~np~~IcvATV~~v~~----~~l~v~fDgw~~~~d~w~~~~S~~I~P 417 (437)
T 3feo_A 360 NHGFRVGMKLEAVDLMEPRLICVATVTRIIH----RLLRIHFDGWEEEYDQWVDCESPDLYP 417 (437)
T ss_dssp CCCCCTTCEEEEECTTSTTCEEEEEEEEEET----TEEEEEETTSCGGGCEEEETTCTTEEC
T ss_pred cccCccCCEEEeecCCCCCcEEEEEEeEEcC----CEEEEEECCCCCcCCeEEeCCCCCccc
Confidence 356999999999874 6889999999983 378999999999999999874 5654
No 73
>3ut1_A Lethal(3)malignant brain tumor-like protein 3; chromatin modification, transcription repression, MBT repeat structural genomics; HET: EPE; 2.05A {Homo sapiens} PDB: 4fl6_A* 1wjs_A
Probab=93.30 E-value=0.16 Score=47.97 Aligned_cols=52 Identities=25% Similarity=0.457 Sum_probs=43.4
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
..|++|-++.+.+. ..+.-|.|.+|... ...|||.||...+|-|+..+ .|+.
T Consensus 142 ~~F~vGMKLEavDp~~p~~icvATV~~V~g~----~l~v~~Dg~~~~~d~w~~~~Sp~I~P 198 (324)
T 3ut1_A 142 SGFRVGMKLEAVDKKNPSFICVATVTDMVDN----RFLVHFDNWDESYDYWCEASSPHIHP 198 (324)
T ss_dssp CSCCTTCEEEEEETTEEEEEEEEEEEEEETT----EEEEEETTSCGGGCEEECTTCTTEEC
T ss_pred cccccCCEEEEecCCCCCcEEEEEEEEEECC----EEEEEECCCCCcCCEEEECCCCCccc
Confidence 57999999999886 56789999988732 58999999999999999864 5554
No 74
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=93.04 E-value=0.086 Score=41.73 Aligned_cols=60 Identities=17% Similarity=0.234 Sum_probs=44.1
Q ss_pred CCCCCCCCCCEEEEEeCC-ceeeeEEEEEEec--------CCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 23 SNSSLFSEGERVLAYHGP-CIYEAKVQKAELR--------KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~--------~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
.++..|.+||.|++.-+| .+|+|+|++.... .....|.|+|-|=+. | -||+.++|..+++
T Consensus 4 ~~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~-~-awv~~~~l~p~~~ 72 (110)
T 2daq_A 4 GSSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHD-Y-YWVHQGRVFPYVE 72 (110)
T ss_dssp SCCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTE-E-EEECSSSSEECCS
T ss_pred CCCCCCCCCCEEEEEeCCCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCC-E-EEEcHHHCcCcch
Confidence 345678999999998765 5899999977421 123579999999222 2 6999999987764
No 75
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=92.33 E-value=0.087 Score=40.79 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCCCCCCEEEEEeCC-ceeeeEEEEEEec---CCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 26 SLFSEGERVLAYHGP-CIYEAKVQKAELR---KKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~-~~y~Akil~~~~~---~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
..|.+||.|++.-+| -++.|+|+++... .....|.|.|-|-+.+ -||+.++|+.+.
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~--awv~~~~l~pf~ 63 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHET--AFLGPKDLFPYD 63 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCE--EEECGGGEEEHH
T ss_pred CcCccCCEEEEecCCCCCCCEEEeecccccccCCCCEEEEEEEcCCCc--ceEchhHeeEHH
Confidence 579999999997765 4789999987431 1235899999997653 699999999886
No 76
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=91.91 E-value=0.37 Score=41.86 Aligned_cols=54 Identities=20% Similarity=0.169 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
....+|+.|.+.+ +|.||.|+|+++...+ .+.|+|..|... |+|+.++|....+
T Consensus 64 ~~~~~G~~c~a~~~~d~~wyRa~V~~~~~~~---~~~V~~vDyG~~--~~v~~~~l~~l~~ 119 (201)
T 4b9w_A 64 FKAEIGRPCCAFFSGDGNWYRALVKEILPSG---NVKVHFVDYGNV--EEVTTDQLQAILP 119 (201)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECTTS---CEEEEETTTCCE--EEECGGGEEECCG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCC---eEEEEEEccCCE--EEEEHHHhccChH
Confidence 3457899999976 5899999999886432 588999998874 8999998876543
No 77
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=91.86 E-value=0.77 Score=37.08 Aligned_cols=54 Identities=15% Similarity=0.287 Sum_probs=44.3
Q ss_pred CCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
+.+.+|++|.|.|. |..|.|+|+.+.. +..|-|+|. ...|=.+.++..|...+-
T Consensus 4 ~~v~vGq~V~akh~ngryy~~~V~~~~~---~~~y~V~F~--DgS~s~dl~peDIvs~dc 58 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFYQCEVVRLTT---ETFYEVNFD--DGSFSDNLYPEDIVSQDC 58 (118)
T ss_dssp SCCCTTCEEEEECTTSSEEEEEEEEEEE---EEEEEEEET--TSCEEEEECGGGBCSSCH
T ss_pred ceeccCCEEEEECCCCCEEeEEEEEEee---EEEEEEEcC--CCCccCCCCHhhcccccc
Confidence 45899999999996 8899999999976 468999998 455667888888887654
No 78
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=91.78 E-value=0.091 Score=44.14 Aligned_cols=58 Identities=14% Similarity=0.256 Sum_probs=44.9
Q ss_pred CCCCCCCCEEEEEeCC-ceeeeEEEEEEec---CCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 25 SSLFSEGERVLAYHGP-CIYEAKVQKAELR---KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~-~~y~Akil~~~~~---~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
+..|.+|+.|++.-+| .|++|+|+.+... .....|.|.|-|=+.+ -||+..+|+.+.+
T Consensus 20 ~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~--awv~~~~l~~f~e 81 (153)
T 4fu6_A 20 TRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHET--AFLGPKDIFPYSE 81 (153)
T ss_dssp GGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCE--EEECGGGEEEHHH
T ss_pred ccCCCCCCEEEEeCCCCCCCCEEEeEchhhccCCCCCEEEEEecCCCCe--EEeCHHHccChHh
Confidence 4579999999998776 5899999876432 2235899999997654 6999999998864
No 79
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=91.75 E-value=0.48 Score=42.20 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=44.1
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
....+|+.|++.+ +|.||.|+|+++... ..+.|+|.+|... ++|+.++|....+
T Consensus 64 ~~~~~G~~c~a~~~d~~wyRa~V~~~~~~---~~~~V~~vDyGn~--~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 64 YAPRRGEFCIAKFVDGEWYRARVEKVESP---AKIHVFYIDYGNR--EVLPSTRLGTLSP 118 (246)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEEET---TEEEEEETTTCCE--EEECGGGEECCCG
T ss_pred CCCCCCCEEEEEcCCCCEEEEEEEEEcCC---CeEEEEEEeCCCe--EEEeHHHhhcCCH
Confidence 3457999999987 699999999999753 3789999998764 7999988887653
No 80
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=91.74 E-value=0.27 Score=41.63 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=39.9
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
....+|+.|.+.+ +|.||.|+|+++...+ .+.|+|.+|... +.+ ++|....
T Consensus 46 ~~~~~G~~c~A~~~~d~~wyRa~I~~~~~~~---~~~V~fvDyGn~--~~v--~~lr~l~ 98 (169)
T 3ntk_A 46 SDLKEGALCVAQFPEDEVFYRAQIRKVLDDG---KCEVHFIDFGNN--AVT--QQFRQLP 98 (169)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECSTT---CEEEEETTTTEE--EEE--SCEECCC
T ss_pred CCCCCCCEEEEEECCCCcEEEEEEEEECCCC---EEEEEEEecCCe--EEh--hhhhccC
Confidence 3678999999986 6999999999987532 789999999876 334 6666554
No 81
>2dnt_A Chromodomain protein, Y chromosome-like, isoform B; histone H3 tail, choromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.13.2
Probab=91.46 E-value=0.15 Score=37.98 Aligned_cols=35 Identities=20% Similarity=0.466 Sum_probs=28.8
Q ss_pred EEEEEEe-cCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAEL-RKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~-~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+||+.+. .+|...|+|++.||....+.|.|++.|.
T Consensus 18 ~Il~~r~~~~g~~~YlVKWkGy~~~~~TWEp~~~l~ 53 (78)
T 2dnt_A 18 RIVDKRKNKKGKTEYLVRWKGYDSEDDTWEPEQHLV 53 (78)
T ss_dssp CEEEEEECTTSCEEEEECBTTBCGGGCEEEETTTCT
T ss_pred EEEEEEEcCCCcEEEEEEECCCCccCCceecHHHHH
Confidence 4555554 4567899999999999999999999886
No 82
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=91.20 E-value=0.51 Score=41.75 Aligned_cols=54 Identities=20% Similarity=0.151 Sum_probs=42.9
Q ss_pred CCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 26 SLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 26 ~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
....+|+.|.|.+ +|.||.|+|+++... ..+.|+|..|... |+|+.++|....+
T Consensus 64 ~~~~~G~~c~a~~~~d~~WyRa~V~~~~~~---~~~~V~~vDyGn~--~~v~~~~l~~l~~ 119 (226)
T 4b9x_A 64 FKAEIGRPCCAFFSGDGNWYRALVKEILPS---GNVKVHFVDYGNV--EEVTTDQLQAILP 119 (226)
T ss_dssp CCCCTTCEEEEEETTTTEEEEEEEEEECSS---SEEEEECTTTCCE--EEEEGGGEECCCG
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCC---CeEEEEEEecCCE--EEEEHHHhccChH
Confidence 3457899999976 589999999988643 2588999999874 7899998876643
No 83
>1g6z_A CLR4 protein; transferase; NMR {Schizosaccharomyces pombe} SCOP: b.34.13.2
Probab=91.20 E-value=0.085 Score=38.57 Aligned_cols=35 Identities=17% Similarity=0.478 Sum_probs=29.9
Q ss_pred EEEEEEecC-Ceee-EEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAELRK-KEWR-YYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~~~-~~~~-Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+|++.+..+ |... |+|++.||....+.|.|++.|.
T Consensus 13 ~Il~~r~~~~g~~~~YlVKWkGy~~~~~TWEp~enL~ 49 (70)
T 1g6z_A 13 RIVDEKLDRNGAVKLYRIRWLNYSSRSDTWEPPENLS 49 (70)
T ss_dssp SCSEEECCTTSSCCEEEECCTTTTSSCCEEECGGGGS
T ss_pred EEEEEEEcCCCcEEEEEEEECCCCCCCCceecHHHHh
Confidence 577777666 7778 9999999999999999999874
No 84
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=90.68 E-value=0.36 Score=40.99 Aligned_cols=63 Identities=19% Similarity=0.301 Sum_probs=48.0
Q ss_pred CCCCCCCCCCEEEEEeCC-ceeeeEEEEEEec----------------------------CCeeeEEEEecCCCCCccee
Q 021037 23 SNSSLFSEGERVLAYHGP-CIYEAKVQKAELR----------------------------KKEWRYYVHYLGWNKNWDEW 73 (318)
Q Consensus 23 ~~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~----------------------------~~~~~Y~VHY~Gwn~r~DEW 73 (318)
.+...|+.|+.|++.-.| -||.|.|++-... .+...|.|.|.|=+..| -|
T Consensus 32 ~~~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~-aW 110 (158)
T 3pfs_A 32 EDRGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTW-QW 110 (158)
T ss_dssp SCCSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCE-EE
T ss_pred CcCCCCCCCCEEEEecCCCCCCCEEEcCCCCccccccccccccCCChHHHHhhcccccccCCCCEEEEEEcCCCCce-Ee
Confidence 344689999999998866 5899999873331 13568999999933344 69
Q ss_pred eecCcccccChHh
Q 021037 74 VGVDRLLKHTEEN 86 (318)
Q Consensus 74 V~~~ri~k~~~en 86 (318)
|+.++|..++.+.
T Consensus 111 V~~~~L~Pl~~d~ 123 (158)
T 3pfs_A 111 LPRDKVLPLGVED 123 (158)
T ss_dssp EEGGGEEECSSCH
T ss_pred eccccEeecCCch
Confidence 9999999998665
No 85
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=90.23 E-value=0.22 Score=42.14 Aligned_cols=59 Identities=19% Similarity=0.192 Sum_probs=46.7
Q ss_pred CCCCCCCCCEEEEEeCC-ceeeeEEEEEEec----CCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 24 NSSLFSEGERVLAYHGP-CIYEAKVQKAELR----KKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~----~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
++..|.+||.|++.-.| -++.|+|+..... .....|.|.|-|-+.+ -||..++|+.+++
T Consensus 13 dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~--awv~~~~L~pf~e 76 (154)
T 3llr_A 13 DGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKF--SVVCVEKLMPLSS 76 (154)
T ss_dssp SSCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCE--EEEEGGGEEEGGG
T ss_pred cCCCCccCCEEEEecCCCCCCCEEEecccccccccCCCCEEEEEEeCCCCE--EEEcHHHCcchhh
Confidence 34679999999997665 5899999987532 1234899999999965 6999999998865
No 86
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=89.56 E-value=0.84 Score=38.63 Aligned_cols=44 Identities=23% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCCCCCCCEEEEEeC--CceeeeEEEEEEecC----------------CeeeEEEEecCCC
Q 021037 24 NSSLFSEGERVLAYHG--PCIYEAKVQKAELRK----------------KEWRYYVHYLGWN 67 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~----------------~~~~Y~VHY~Gwn 67 (318)
..+.|++||.|-|.+. |.|+||+|+.|-... ....|.|-|.++-
T Consensus 7 ~~glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddyp 68 (161)
T 3db3_A 7 ELGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYP 68 (161)
T ss_dssp CCCSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCG
T ss_pred ccceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCc
Confidence 3478999999999994 999999999977641 3468999999873
No 87
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=89.22 E-value=0.71 Score=39.94 Aligned_cols=52 Identities=23% Similarity=0.244 Sum_probs=42.0
Q ss_pred CCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 27 LFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 27 ~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
...+|+.|++.+ ++.||.|+|+++.. ..+.|+|.+|... +.|+.++|....+
T Consensus 51 ~~~~g~~c~a~~~~d~~wyRa~V~~v~~----~~~~V~~vDyG~~--~~v~~~~l~~l~~ 104 (218)
T 2wac_A 51 TPKRGDLVAAQFTLDNQWYRAKVERVQG----SNATVLYIDYGNK--ETLPTNRLAALPP 104 (218)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEEET----TEEEEEETTTCCE--EEEEGGGEEECCG
T ss_pred cCCcCCEEEEEECCCCeEEEEEEEEecC----CeEEEEEEecCCe--EEEchHHcccCCh
Confidence 467999999987 48999999999865 4789999988764 6788888776543
No 88
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=88.93 E-value=0.83 Score=40.93 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEeC--CceeeeEEEEEEecC-------CeeeEEEEecCCCC
Q 021037 26 SLFSEGERVLAYHG--PCIYEAKVQKAELRK-------KEWRYYVHYLGWNK 68 (318)
Q Consensus 26 ~~f~~ge~v~~~~~--~~~y~Akil~~~~~~-------~~~~Y~VHY~Gwn~ 68 (318)
+.|++||.|-|.+. |.||+|+|+.|.... ....|-|-|.++..
T Consensus 1 ~~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~ 52 (226)
T 3ask_A 1 SLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPE 52 (226)
T ss_dssp CCSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGG
T ss_pred CccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcc
Confidence 35899999999994 899999999999843 44789999999843
No 89
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=88.19 E-value=0.59 Score=38.02 Aligned_cols=54 Identities=15% Similarity=0.217 Sum_probs=44.5
Q ss_pred CCCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 25 SSLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
.+.+.+|++|.|.|. |..|.|+|+.+.. +..|-|+|. ...|=.+..+..|.-.+
T Consensus 4 ~~~v~vGq~V~ak~~ngryy~~~V~~~~~---~~~y~V~F~--DgS~s~dl~PedIvs~d 58 (123)
T 2xdp_A 4 EKVISVGQTVITKHRNTRYYSCRVMAVTS---QTFYEVMFD--DGSFSRDTFPEDIVSRD 58 (123)
T ss_dssp CCCCCTTCCCCCCCCCCCCCCCEEEEEEE---EEEEEEEET--TSCEEEEECGGGBCSSC
T ss_pred ccccccCCEEEEECCCCcEEeEEEEEEee---EEEEEEEcC--CCCccCCCCHhHccccc
Confidence 456899999999996 8999999999986 578999998 55666678888886554
No 90
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=87.58 E-value=0.71 Score=38.56 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=45.1
Q ss_pred CCCCCCCCCEEEEEeCC-ceeeeEEEEEEecC----CeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 24 NSSLFSEGERVLAYHGP-CIYEAKVQKAELRK----KEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~-~~y~Akil~~~~~~----~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
+...|.+||.|++.-.| -+|.|+|++..... ....|.|.|-|-+. + -||..++|+.+++
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~-~-awv~~~~L~p~~~ 71 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGK-F-SEISADKLVALGL 71 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCC-E-EEEEGGGCEETTS
T ss_pred CCccCcCCCEEEEecCCcCCCCEEeccchhhhcccCCCCeEEEEEecCCC-E-EEEcHHHCccchH
Confidence 34679999999997765 58999999765421 12489999999654 2 7999999998753
No 91
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=85.59 E-value=1.7 Score=43.63 Aligned_cols=53 Identities=25% Similarity=0.251 Sum_probs=44.3
Q ss_pred CCCCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccC
Q 021037 26 SLFSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 26 ~~f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~ 83 (318)
....+|+.|++.+ ++.||.|+|+++.. ...+.|+|.+|... ++|+.++|....
T Consensus 410 ~~~~~G~~c~a~~~d~~wyRa~I~~v~~---~~~~~V~fvDyGn~--e~v~~~~Lr~l~ 463 (570)
T 3bdl_A 410 YAPRRGEFCIAKFVDGEWYRARVEKVES---PAKIHVFYIDYGNR--EVLPSTRLGTLS 463 (570)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEEEE---TTEEEEEETTTCCE--EEECGGGEECCC
T ss_pred cCCCcCCEEEEEECCCCEEEEEEEEEcC---CCeEEEEEEeCCCe--EEEEHHHCccCC
Confidence 3467999999988 79999999999986 24789999998874 789998887765
No 92
>3f70_A Lethal(3)malignant brain tumor-like 2 protein; MBT, chromatin regulator, metal-binding, nucleus, transcript transcription regulation, zinc-finger; HET: MLZ; 2.10A {Homo sapiens} PDB: 3dbb_A* 3cey_A
Probab=85.18 E-value=1.5 Score=43.26 Aligned_cols=53 Identities=17% Similarity=0.053 Sum_probs=38.6
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--ccccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLKH 82 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k~ 82 (318)
..|.+|-++.+.+. ...+-|.|.+|-. ..++|||.||..+.|-|+..+ +|+..
T Consensus 152 ~~F~~GmkLE~vD~~~~~~~~vAtV~~v~g----~rl~l~~~~~~~~~dfWc~~~Sp~IhPV 209 (456)
T 3f70_A 152 YPFRQGMRLEVVDKSQVSRTRMAVVDTVIG----GRLRLLYEDGDSDDDFWCHMWSPLIHPV 209 (456)
T ss_dssp CSSCTTCEEEEECTTCTTCEEEEEEEEEET----TEEEEEECC----CCEEEETTCTTEEET
T ss_pred CCCCCCCEEEEECCCCCcceEEEEEEEEEC----CEEEEEEcCCCCCCceEEeCCCCCeecc
Confidence 56999999999986 4566788888762 489999999999999999864 55543
No 93
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=84.62 E-value=1.6 Score=38.72 Aligned_cols=52 Identities=8% Similarity=0.005 Sum_probs=41.7
Q ss_pred CCCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 26 SLFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 26 ~~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+...||.+|+..+. +.||.++|++|...+++..|.|-|.+= -+.-|+...|.
T Consensus 7 ~~l~Vg~~vlg~k~~~~W~rg~v~~I~~~~~g~~YkVkF~~~---g~~ivs~~hiA 59 (213)
T 3dlm_A 7 GDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNK---GKSLLSGNHIA 59 (213)
T ss_dssp TTEETTCEEEEECTTSBEEEEEEEEEEEETTEEEEEEEESSS---CEEEECGGGEE
T ss_pred CcEEEccEEEEEecCCcEEEEEEEEEEECCCCeEEEEEEcCC---CCEEeecceEE
Confidence 56789999999885 899999999999988889999999941 23456655553
No 94
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=83.06 E-value=1.6 Score=35.73 Aligned_cols=60 Identities=18% Similarity=0.331 Sum_probs=45.3
Q ss_pred CCCCCCCEEEEEeCC-ceeeeEEEEEEe----------------------------cCCeeeEEEEecCCCCCcceeeec
Q 021037 26 SLFSEGERVLAYHGP-CIYEAKVQKAEL----------------------------RKKEWRYYVHYLGWNKNWDEWVGV 76 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~-~~y~Akil~~~~----------------------------~~~~~~Y~VHY~Gwn~r~DEWV~~ 76 (318)
+.|+.|+.|++.-.| -||.|.|++-.. ..+...|.|.|-|=...| -||+.
T Consensus 4 ~~~~~~dlVWAK~~gyP~wPa~Iidp~~p~~g~~~~g~~ip~pP~~Vl~~~~~~~~~~~~~~y~V~FFd~~~t~-aWv~~ 82 (130)
T 3l42_A 4 SPLDALDLVWAKCRGYPSYPALIIDPKMPREGMFHHGVPIPVPPLEVLKLGEQMTQEAREHLYLVLFFDNKRTW-QWLPR 82 (130)
T ss_dssp SSSCTTCEEEECCTTSCCEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHCSSCEEEEEESSTTCCE-EEEEG
T ss_pred ccCCCCCEEEEecccCCCCCEEEcCCCCccccccccCccCCCChHHHHhhcccccccCCCcEEEEEeCCCCCce-Eeecc
Confidence 679999999998765 589999987321 112457999999933334 79999
Q ss_pred CcccccChHh
Q 021037 77 DRLLKHTEEN 86 (318)
Q Consensus 77 ~ri~k~~~en 86 (318)
+.|..++.++
T Consensus 83 ~~i~pl~~d~ 92 (130)
T 3l42_A 83 TKLVPLGVNQ 92 (130)
T ss_dssp GGEEESSSCH
T ss_pred cceeecCCch
Confidence 9999888655
No 95
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=80.12 E-value=3.7 Score=34.69 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=25.5
Q ss_pred CCCCCCCEEEEEeC-------CceeeeEEEEEEecCCe
Q 021037 26 SLFSEGERVLAYHG-------PCIYEAKVQKAELRKKE 56 (318)
Q Consensus 26 ~~f~~ge~v~~~~~-------~~~y~Akil~~~~~~~~ 56 (318)
..++||++|++-++ |.||+|+|++.+.....
T Consensus 91 ~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~~~~rT~ 128 (161)
T 3db3_A 91 QDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTA 128 (161)
T ss_dssp GGCCTTCEEEEEECSSSTTSCCEEEEEEEEEEEECSSC
T ss_pred HHCCcCcEEEEecCCCCccccceeEEEEEeeehhhhhh
Confidence 56899999999764 89999999998865433
No 96
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=78.71 E-value=4.6 Score=32.89 Aligned_cols=48 Identities=10% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecC-CCCCcceeeecCcccccC
Q 021037 30 EGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLG-WNKNWDEWVGVDRLLKHT 83 (318)
Q Consensus 30 ~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~G-wn~r~DEWV~~~ri~k~~ 83 (318)
.+..|-+.. .|.+|+|.|.++.. ..++|+|.+ |.. .++|+.+.|+...
T Consensus 4 ~~~~VEV~~~~G~~y~a~V~~v~~----d~~~V~f~n~w~~--~~~vp~~~vRlpP 53 (128)
T 3h8z_A 4 QGLPVEVRGSNGAFYKGFVKDVHE----DSVTIFFENNWQS--ERQIPFGDVRLPP 53 (128)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECS----SEEEEEETTCTTC--CEEEEGGGEECCC
T ss_pred cccEEEEecCCCCEEEEEEEEEeC----CcEEEEEccccCc--ceEechhhEEcCC
Confidence 455665544 59999999988843 369999964 442 5899998887543
No 97
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=77.50 E-value=2.4 Score=36.57 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=32.8
Q ss_pred CCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecCC
Q 021037 26 SLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLGW 66 (318)
Q Consensus 26 ~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~Gw 66 (318)
..|..|.+||+.+. ...|.|.|...... ....|.|.|.|=
T Consensus 115 ~~f~~G~~VLAlYP~TT~FY~A~V~~~p~~-~~~~y~L~FEdd 156 (180)
T 3mea_A 115 ALFQKEQLVLALYPQTTCFYRALIHAPPQR-PQDDYSVLFEDT 156 (180)
T ss_dssp GSCCTTCEEEEECTTSSEEEEEEEEECCSS-TTCCEEEEEBCT
T ss_pred ccCCCCCEEEEeCCCCceeeEEEEecCCCC-CCCcEEEEEcCC
Confidence 56999999999997 67999999987543 335799999984
No 98
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=77.42 E-value=21 Score=26.98 Aligned_cols=90 Identities=13% Similarity=0.085 Sum_probs=53.9
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcCCCCCCcccchHHHHHHHh
Q 021037 182 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 261 (318)
Q Consensus 182 Pa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~~~~~S~iYG~~HLLRL~v 261 (318)
|..+|+.+.+++|+.+.. .+ ....-+......|+.+++.+-..-+ . .+.+ -...++-+.+.
T Consensus 4 ~~~~t~~~~~~~fl~~l~-~~-~s~~Ti~~Y~~~l~~f~~~l~~~~~-~---------------~l~~-it~~~i~~y~~ 64 (117)
T 3nrw_A 4 RPSLSPREARDRYLAHRQ-TD-AADASIKSFRYRLKHFVEWAEERDI-T---------------AMRE-LTGWKLDEYET 64 (117)
T ss_dssp CCCCCHHHHHHHHHHHHT-TT-SCHHHHHHHHHHHHHHHHHHHHTTC-C---------------SGGG-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHHHcCC-C---------------ChHH-CCHHHHHHHHH
Confidence 678999999999999886 22 2222333344445555443311000 0 0111 12334445444
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 262 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 262 kLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
.| ....+.+.+++..+..|..|++|+.+.
T Consensus 65 ~l----~~~~~s~~Ti~~~ls~lr~f~~~l~~~ 93 (117)
T 3nrw_A 65 FR----RGSDVSPATLNGEMQTLKNWLEYLARI 93 (117)
T ss_dssp HH----HTSSCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HH----HhCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 33 225688899999999999999999875
No 99
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.32 E-value=2.5 Score=32.11 Aligned_cols=55 Identities=13% Similarity=-0.033 Sum_probs=39.0
Q ss_pred CCCCCCCCEEEEEe--CCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcccccCh
Q 021037 25 SSLFSEGERVLAYH--GPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLKHTE 84 (318)
Q Consensus 25 ~~~f~~ge~v~~~~--~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k~~~ 84 (318)
+-..++|+-|-|.. ++.||.|+|+.+...... -|-|..+.. -+-|+.++|+...+
T Consensus 19 ~~~~k~g~~vaak~~d~n~WyRakV~~v~~~~~v---eVl~~DyGn--~~~V~~~~LR~L~~ 75 (85)
T 2eqk_A 19 PVKWENDMHCAVKIQDKNQWRRGQIIRMVTDTLV---EVLLYDVGV--ELVVNVDCLRKLEE 75 (85)
T ss_dssp CCCCCSSCEEEEECSSSCCEEEEEEEEECSSSEE---EEECTTTCC--EEEEETTTEEECCH
T ss_pred ccCccCCCEEEEEeCCCCeEEEEEEEEecCCCeE---EEEEEccCC--EEEEEccccccCCH
Confidence 55688999998874 579999999999876542 233333322 38889999887664
No 100
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=71.68 E-value=1.8 Score=37.41 Aligned_cols=34 Identities=18% Similarity=0.477 Sum_probs=28.1
Q ss_pred EEEEecCCeeeEEEEecCCCCCcceeeecCcccc
Q 021037 48 QKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 48 l~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
++-+..++...|+|.+.||+...+.|+|+..|..
T Consensus 49 ld~r~~~~~~eYlVKWkg~s~~h~tWe~~~~L~~ 82 (187)
T 2b2y_A 49 FEKNKEPGEIQYLIKWKGWSHIHNTWETEETLKQ 82 (187)
T ss_dssp CC-CCSCCEEEEEEEETTSCGGGCEEECHHHHHH
T ss_pred cCccccCCcEEEEEEECCCCcccCeeCCHHHhCc
Confidence 3445566788999999999999999999988764
No 101
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=70.58 E-value=5.5 Score=38.97 Aligned_cols=38 Identities=21% Similarity=0.252 Sum_probs=32.1
Q ss_pred CCCCCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 25 SSLFSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
...|..|++|++.+. ...|.|.|...... ..|.|+|.|
T Consensus 455 ~~~~~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~ 494 (522)
T 3mp6_A 455 TKNYPPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDG 494 (522)
T ss_dssp CCCCCTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETT
T ss_pred ccCCCCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecC
Confidence 367999999999997 67999999986443 269999999
No 102
>1x3p_A Cpsrp43; chromo-2 domain, chloroplasts, LHCP, protein translocation, unknown function; NMR {Arabidopsis thaliana} SCOP: b.34.13.2
Probab=69.04 E-value=0.41 Score=33.20 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.0
Q ss_pred EEEEEEecC-Cee-eEEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAELRK-KEW-RYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~~~-~~~-~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+|++.+..+ |.. .|+|+..|| .-+.|-|++.|-
T Consensus 5 ~Ild~r~~~~g~~~~YlVKWkgy--~~~TWEp~~nL~ 39 (54)
T 1x3p_A 5 SVIGKRVGDDGKTIEYLVKWTDM--SDATWEPQDNVD 39 (54)
T ss_dssp CCCCBSSCSSSCCCCBCCCCSSS--SSCSCSTTCCSS
T ss_pred EEEEEEEcCCCcEEEEEEEECCC--CcCCccchHHCC
Confidence 466666655 677 999999999 568999999863
No 103
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=67.88 E-value=4.3 Score=34.10 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=27.2
Q ss_pred CCCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 28 FSEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 28 f~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
-.+|++|++.|. +-+|.++|..... ...|.|.|..
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~~~---~~~Y~V~FdD 45 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDVG---AGKYKLLFDD 45 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECCT---TTEEEEECTT
T ss_pred chhccEEEEEcCCCCcccccEEEEecc---CCEEEEEEcC
Confidence 479999999995 5677999998643 3469999863
No 104
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=67.40 E-value=3 Score=43.36 Aligned_cols=27 Identities=7% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCeeeEEEEecCCCCCcceeeecCccc
Q 021037 54 KKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 54 ~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
++..+|||-|.||+..++.|+|++.|.
T Consensus 69 ~~~~eylvKWkg~s~~hntWe~~e~L~ 95 (800)
T 3mwy_W 69 KENYEFLIKWTDESHLHNTWETYESIG 95 (800)
T ss_dssp HHHCEEEEECSSSCTTSCEEECHHHHC
T ss_pred cCceEEEEEeCCcceeeccccCHHHHh
Confidence 456799999999999999999998775
No 105
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=66.60 E-value=9 Score=31.96 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=31.0
Q ss_pred CCEEEEEeCC---ceeeeEEEEEEec--CCeeeEEEEecCCCC
Q 021037 31 GERVLAYHGP---CIYEAKVQKAELR--KKEWRYYVHYLGWNK 68 (318)
Q Consensus 31 ge~v~~~~~~---~~y~Akil~~~~~--~~~~~Y~VHY~Gwn~ 68 (318)
-.+|+++|.| ..|+|.|+..... .+...|.|+|..=+.
T Consensus 9 ~NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~ 51 (153)
T 2fhd_A 9 KNRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATM 51 (153)
T ss_dssp GGEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCE
T ss_pred cceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCCC
Confidence 3579999975 5899999999866 577899999987544
No 106
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=65.01 E-value=12 Score=33.45 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCCCCCEEEEEe-------CCceeeeEEEEEEecC
Q 021037 18 RDTPPSNSSLFSEGERVLAYH-------GPCIYEAKVQKAELRK 54 (318)
Q Consensus 18 ~~~~~~~~~~f~~ge~v~~~~-------~~~~y~Akil~~~~~~ 54 (318)
|.....+...+.+|..|++.+ .|.||.|+|+.++...
T Consensus 66 rar~~~~~~~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r 109 (226)
T 3ask_A 66 RARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETR 109 (226)
T ss_dssp CCCCBCCGGGCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECS
T ss_pred cccccCCccccccCcEEEEecccCCccccCceeehhhhhhhhcc
Confidence 333344456789999999988 5999999999999764
No 107
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=61.25 E-value=1.3 Score=35.50 Aligned_cols=53 Identities=23% Similarity=0.483 Sum_probs=39.0
Q ss_pred CCCCCEEEEEe-C--------CceeeeE-------EEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 28 FSEGERVLAYH-G--------PCIYEAK-------VQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 28 f~~ge~v~~~~-~--------~~~y~Ak-------il~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
|+-=|+|+-.. | ...|... |++-+...|..+|+|-+.||+...+-|-|...|.
T Consensus 13 ~etie~v~~~r~g~~g~tg~~~~~Y~VE~i~Dp~~ildkR~~~g~~eYlVKWkG~s~~~nTWEp~enL~ 81 (115)
T 2b2y_C 13 FETIERFMDCRIGRKGATGATTTIYAVEADGDPNAGFEKNKEPGEIQYLIKWKGWSHIHNTWETEETLK 81 (115)
T ss_dssp CCBEEEEEEEEEECTTCCSGGGSHHHHHHHCBTTTTCCTTSSSCEEEEEEEETTSCGGGCEEECHHHHH
T ss_pred HHHHHHHHHhhcCCCCCCCCCCceEEEeecCCcccccccceeCCcEEEEEEECCCCchhcccCCHHHcC
Confidence 44446666543 1 2456664 3666667889999999999999999999997764
No 108
>2a7y_A Hypothetical protein RV2302/MT2359; anti-parallel beta sheet, structural genomics, PSI, protein structure initiative; NMR {Mycobacterium tuberculosis} SCOP: b.34.6.3
Probab=59.55 E-value=7 Score=29.41 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=37.2
Q ss_pred CCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeec
Q 021037 27 LFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGV 76 (318)
Q Consensus 27 ~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~ 76 (318)
.-.+||++++.-. -....++|++|...+|.+-|.|+| |..-+.-+|-+
T Consensus 5 ~A~vGDrlvv~g~~vg~~~R~GeIvEV~g~dG~PPY~VRw--~ddGHe~lv~P 55 (83)
T 2a7y_A 5 HAKVGDYLVVKGTTTERHDQHAEIIEVRSADGSPPYVVRW--LVNGHETTVYP 55 (83)
T ss_dssp CCCTTEEEEESCTTTSCCEEEEEEEECSCSSSCSCEEEEE--TTTTEEEEECC
T ss_pred CccCCCEEEEecCcCCCCCcEEEEEEEECCCCCCCEEEEe--cCCCcEEEEec
Confidence 4578999888653 457899999999999999999998 34455566643
No 109
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=58.47 E-value=62 Score=27.48 Aligned_cols=140 Identities=14% Similarity=0.191 Sum_probs=71.8
Q ss_pred ecChhHHHHHHHHHHHhhhC----CceeeCCCCCC-HHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCC
Q 021037 156 QIPSTLKKQLVDDWEFVNQQ----DKLVKLPRLPN-VDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLY 230 (318)
Q Consensus 156 ~iP~~Lk~iLvdD~~~i~~~----~~L~~LPa~~t-V~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY 230 (318)
.+|..+..++. .|.+. --|+++|...+ |.++.+.|-.............+..++.-|+.||... +.-|+-
T Consensus 26 ~vP~iv~~~i~----~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreL-PePLi~ 100 (209)
T 2ee4_A 26 PIPLFVEKCVE----FIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADL-PDPLIP 100 (209)
T ss_dssp CSCHHHHHHHH----HHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHS-SSCSSC
T ss_pred CCChHHHHHHH----HHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhC-CCccCC
Confidence 57877766542 22222 24778887654 4555555543221100000112445566677777754 433332
Q ss_pred h---------------hhHhh-HhHhhcCCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHHHH------------
Q 021037 231 K---------------KERQQ-YHDLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQ------------ 282 (318)
Q Consensus 231 ~---------------~ER~Q-Y~~~~~~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l~~------------ 282 (318)
. .||.+ ...++ ...++....=..+|+++|.++-.--....|+...+..+..
T Consensus 101 ~~l~~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLaivf~P~L~~~~~~~~~ 179 (209)
T 2ee4_A 101 YSLHPELLEAAKIPDKTERLHALKEIV-KKFHPVNYDVFRYVITHLNRVSQQHKINLMTADNLSICFWPTLMRPDFENRE 179 (209)
T ss_dssp TTTHHHHHHHHSCSSHHHHHHHHHHHT-TTSCTTHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHSCCCCCSSC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHhcccccCCCCccHH
Confidence 1 12211 11122 2234444444566667766655433345677666654322
Q ss_pred ------HHHHHHHHHHHchhccccc
Q 021037 283 ------KMIDFLKFMQKNQSTFFLS 301 (318)
Q Consensus 283 ------~l~~fL~fL~~n~~~~f~~ 301 (318)
....++++|-+|.+.+|.+
T Consensus 180 ~l~~~~~~~~vve~LI~~~~~iF~~ 204 (209)
T 2ee4_A 180 FLSTTKIHQSVVETFIQQCQFFFYN 204 (209)
T ss_dssp CSCCCTTHHHHHHHHHHTHHHHTTC
T ss_pred HHHHhHHHHHHHHHHHHhhHHHcCC
Confidence 2467899999999999973
No 110
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=58.44 E-value=24 Score=31.05 Aligned_cols=47 Identities=13% Similarity=0.242 Sum_probs=38.6
Q ss_pred CCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC
Q 021037 25 SSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD 77 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ 77 (318)
.-.+.+|+++..-+.|.|+.|+|++++-. -=.|+|.+=+++ |||=.+
T Consensus 156 mv~~~~GQ~i~~E~~g~w~~~~V~~vD~S----Lv~v~f~~dkr~--EWIYRG 202 (213)
T 3dlm_A 156 MVLLKSGQLIKTEWEGTWWKSRVEEVDGS----LVRILFLDDKRC--EWIYRG 202 (213)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEEEEETT----EEEEEETTTTEE--EEEETT
T ss_pred eEEcCCCCEEEEEecCcEEEEEEEEEcce----eEEEEEcCCCee--EEEEcC
Confidence 35789999999999999999999999854 567889886653 999653
No 111
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=54.87 E-value=56 Score=23.78 Aligned_cols=88 Identities=14% Similarity=0.103 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHhhhc-cCCcchhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcCCCCCCcccchHHHHHHH
Q 021037 182 PRLPNVDDILTKYLQYRSK-KDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLF 260 (318)
Q Consensus 182 Pa~~tV~~IL~~y~~~~~~-~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~~~~~S~iYG~~HLLRL~ 260 (318)
|..+|+.+++++|++.... .....+ +......+..+|...+|...|-.. ...++.+++
T Consensus 4 ~~~~t~~~~~~~~l~~~~~~~~~~~T--~~~y~~~~~~~i~~~~g~~~l~~I-------------------t~~~i~~~~ 62 (117)
T 2kkp_A 4 PSKITVEQWLNRWLTDYAKPHLRQST--WESYETVLRLHVIPTLGSIPLKKL-------------------QPADIQRLY 62 (117)
T ss_dssp SCCSCHHHHHHHHHHHHTSCCCSCCC--CSHHHHHHHHHHCCCCCTSCTTTC-------------------CHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHhccCCCccH--HHHHHHHHHHHhccccCceEHHHC-------------------CHHHHHHHH
Confidence 6788999999999987421 111111 111112334444444554322222 234444555
Q ss_pred hhhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 261 VKLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 261 vkLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
..|- ...+...+++.....+..|++|..++
T Consensus 63 ~~l~----~~~~s~~t~~~~~~~l~~~~~~A~~~ 92 (117)
T 2kkp_A 63 ASKL----ESGLSPTRVRYIHVVLHEAMSQARES 92 (117)
T ss_dssp HHHH----HTTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHH----HcCCCHHHHHHHHHHHHHHHHHHHHC
Confidence 4432 23467788999999999999998864
No 112
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=53.95 E-value=4.8 Score=34.44 Aligned_cols=26 Identities=4% Similarity=0.323 Sum_probs=23.4
Q ss_pred eeeEEEEecCCCCCcceeeecCcccc
Q 021037 56 EWRYYVHYLGWNKNWDEWVGVDRLLK 81 (318)
Q Consensus 56 ~~~Y~VHY~Gwn~r~DEWV~~~ri~k 81 (318)
..+|||-+.||+...+.|+++..|..
T Consensus 46 ~~EYlVKWKg~Sy~HnTWe~ee~L~~ 71 (177)
T 2h1e_A 46 NYEFLIKWTDESHLHNTWETYESIGQ 71 (177)
T ss_dssp HEEEEEEETTSCGGGCEEECHHHHCS
T ss_pred ceEEEEEECCCccccCeecCHHHHhh
Confidence 46999999999999999999987763
No 113
>2epb_A Chromodomain-helicase-DNA-binding protein 6; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.57 E-value=20 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.190 Sum_probs=22.4
Q ss_pred eeeEEEEecCCCCCcceeeecCcc
Q 021037 56 EWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 56 ~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
..+|+|...|+...-.-|-+++.|
T Consensus 32 ~~eYLVKWkgl~y~e~TWE~~~~l 55 (68)
T 2epb_A 32 VTHYLVKWCSLPYEESTWELEEDV 55 (68)
T ss_dssp EEEEEEECTTSCGGGCCEEETTTS
T ss_pred ceEEEEEEcCCChhcCccccchhc
Confidence 679999999999999999999888
No 114
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=49.27 E-value=53 Score=24.10 Aligned_cols=88 Identities=11% Similarity=0.104 Sum_probs=49.6
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcCCCCCCcccchHHHHHHHh
Q 021037 182 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 261 (318)
Q Consensus 182 Pa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~~~~~S~iYG~~HLLRL~v 261 (318)
|..+|+.+++++|++....... ...+......+..||...+|..-|-.. ...++.+++.
T Consensus 3 ~~~~t~~~~~~~~~~~~~~~~~--~~T~~~y~~~l~~~i~~~~g~~~l~~i-------------------t~~~i~~~~~ 61 (118)
T 2kd1_A 3 PSKLSYGEYLESWFNTKRHSVG--IQTAKVLKGYLNSRIIPSLGNIKLAKL-------------------TSLHMQNYVN 61 (118)
T ss_dssp CSCSBHHHHHHHHHHHHHHHHC--HHHHHHHHHHHTTTHHHHTTSSBGGGC-------------------CHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHhhhHhhCcCCHHhC-------------------CHHHHHHHHH
Confidence 5678999999999987531111 111112222233333333443222211 2344555554
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 262 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 262 kLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
.|- ...+...+++.+...+..|++|..++
T Consensus 62 ~l~----~~g~s~~t~~~~~~~l~~~~~~a~~~ 90 (118)
T 2kd1_A 62 SLR----DEGLKRGTIEKIIKVIRNSLEHAIDL 90 (118)
T ss_dssp HHH----HHTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHH----HcCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 432 13467788999999999999999865
No 115
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=44.89 E-value=1.5e+02 Score=25.31 Aligned_cols=142 Identities=13% Similarity=0.132 Sum_probs=68.6
Q ss_pred ecChhHHHHHHHHH-HHhhhCCceeeCCCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhH
Q 021037 156 QIPSTLKKQLVDDW-EFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKER 234 (318)
Q Consensus 156 ~iP~~Lk~iLvdD~-~~i~~~~~L~~LPa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER 234 (318)
.+|..+..++..=. .-+.. --|+++|...+- +-|.+-.+.-.....-....+..++.-|+.||.. |+.-|+-..=-
T Consensus 24 ~vP~iv~~~i~~l~~~gl~~-eGIfR~sG~~~~-~~l~~~~d~~~~~~~~~~~dv~~va~lLK~flRe-LPePLl~~~ly 100 (216)
T 1pbw_A 24 IAPPLLIKLVEAIEKKGLEC-STLYRTQSSSNL-AELRQLLDCDTPSVDLEMIDVHVLADAFKRYLLD-LPNPVIPAAVY 100 (216)
T ss_dssp CSCHHHHHHHHHHHHHHTTC-TTTTSSCCSCCT-THHHHHSCSSSSCCCGGGBCHHHHHHHHHHHHHT-SSSCSSCHHHH
T ss_pred CcCHHHHHHHHHHHHcCCCC-CCeeeCCChHHH-HHHHHHHHcCCCCCCccccCHHHHHHHHHHHHHh-CCCCCCCHHHH
Confidence 46877766532111 12322 348888887776 5444433321111111122355566667777765 44444422111
Q ss_pred hhH-----------------hHhhcC--CCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHHH--------------
Q 021037 235 QQY-----------------HDLVVD--NVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQ-------------- 281 (318)
Q Consensus 235 ~QY-----------------~~~~~~--~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l~-------------- 281 (318)
..+ ..++ . ..++....=+.+|+++|.++-+-=....|+..++..+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~ll-~~~~LP~~n~~~L~~L~~~L~~V~~~~~~NkM~~~NLAivf~P~Ll~~~~~~~~~ 179 (216)
T 1pbw_A 101 SEMISLAPEVQSSEEYIQLLKKLI-RSPSIPHQYWLTLQYLLKHFFKLSQTSSKNLLNARVLSEIFSPMLFRFSAASSDN 179 (216)
T ss_dssp HHHHHHGGGCCSHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHhhhcCCCCCCchhh
Confidence 111 1122 1 23333444445566666655443334456665554322
Q ss_pred -HHHHHHHHHHHHchhccccc
Q 021037 282 -QKMIDFLKFMQKNQSTFFLS 301 (318)
Q Consensus 282 -~~l~~fL~fL~~n~~~~f~~ 301 (318)
.....++++|-+|.+..|..
T Consensus 180 ~~~~~~vve~LI~~~~~iF~~ 200 (216)
T 1pbw_A 180 TENLIKVIEILISTEWNERQP 200 (216)
T ss_dssp HHHHHHHHHHHHHTTC-----
T ss_pred hHHHHHHHHHHHhhhHHhcCC
Confidence 56788999999999999974
No 116
>3h6z_A Polycomb protein SFMBT; MBT, MBR repeat, aromatic CAGE, chromatin regulator, DNA-BIN metal-binding, nucleus, repressor, transcription; HET: MLZ SUC; 2.80A {Drosophila melanogaster}
Probab=44.85 E-value=41 Score=32.79 Aligned_cols=50 Identities=20% Similarity=0.221 Sum_probs=39.6
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCCcceeeecC--cccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVD--RLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~--ri~k 81 (318)
..|++|-++.+.+. ...+-|.|.++... .|+|||.| ...|-|+..+ +|+.
T Consensus 155 ~~F~~GmkLE~vD~~~~~~i~vAtV~~v~g~----rl~l~~~d--~~~dfwc~~~Sp~I~P 209 (447)
T 3h6z_A 155 SRFRLGLNLECVDKDRISQVRLATVTKIVGD----RLFLRYFD--SDDGFWCHEDSPIIHP 209 (447)
T ss_dssp CSSCTTCEEEEECTTCTTEEEEEEEEEEETT----EEEEEETT--CSCEEEEETTCTTEEC
T ss_pred cccCCCCEEEEEcCCCCccEEEEEEEEEECC----cEEEEEEC--CCCCEEEeCCCCCccc
Confidence 57999999999885 67888999988743 79999966 3679999874 5553
No 117
>3feo_A MBT domain-containing protein 1; MBTL1, structural genomics, structural genomics consortium, metal-binding, nucleus, zinc-finger; 2.50A {Homo sapiens}
Probab=43.51 E-value=65 Score=31.25 Aligned_cols=53 Identities=17% Similarity=0.149 Sum_probs=37.2
Q ss_pred CCCCCCCEEEEEeC---CceeeeEEEEEEecCCeeeEEEEecCCCCC--cceee-ec--Ccccc
Q 021037 26 SLFSEGERVLAYHG---PCIYEAKVQKAELRKKEWRYYVHYLGWNKN--WDEWV-GV--DRLLK 81 (318)
Q Consensus 26 ~~f~~ge~v~~~~~---~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r--~DEWV-~~--~ri~k 81 (318)
..|++|-++.+.+. ....-|.|.+|-. +....|||.||... .|-|. .. -.|+.
T Consensus 253 ~~F~~GMKLEavDp~~p~~icvATV~~v~~---~g~l~l~~Dg~~~~~~~d~~~~h~~Sp~I~P 313 (437)
T 3feo_A 253 EWFKEGMKLEAIDPLNLSTICVATIRKVLA---DGFLMIGIDGSEAADGSDWFCYHATSPSIFP 313 (437)
T ss_dssp SCCCTTCEEEEEETTEEEEEEEEEEEEECG---GGEEEEEETTCCC-CCTTCEEEETTCTTEEC
T ss_pred cccccCCEEEEEcCCCCceEEEEEEEEEcc---CCEEEEEeCCCCCCCCCCeEEeeCCCCCccc
Confidence 45999999999986 5677888887752 12356999999764 37786 43 25553
No 118
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=40.47 E-value=44 Score=22.57 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=29.2
Q ss_pred CCCCCCCEEEEEeCCc-eeeeEEEEEEecCCeeeEEEEecC
Q 021037 26 SLFSEGERVLAYHGPC-IYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~-~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
-.|.+||+|.+..|+. -++++|.+++..++...-.|.-.|
T Consensus 3 ~~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~G 43 (58)
T 1nz9_A 3 VAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFG 43 (58)
T ss_dssp CSCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSS
T ss_pred cccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCC
Confidence 3589999999999875 479999999876554444444444
No 119
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=40.27 E-value=1.6e+02 Score=24.54 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHchhccc
Q 021037 282 QKMIDFLKFMQKNQSTFF 299 (318)
Q Consensus 282 ~~l~~fL~fL~~n~~~~f 299 (318)
..+..|++||-+|.+..|
T Consensus 181 ~~~~~~v~~LI~~~~~iF 198 (198)
T 1tx4_A 181 NPINTFTKFLLDHQGELF 198 (198)
T ss_dssp HHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHhHHHhC
Confidence 346788899999988776
No 120
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=40.10 E-value=1.1e+02 Score=22.54 Aligned_cols=86 Identities=15% Similarity=0.221 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcCCCCCCcccchHHHHHHHh
Q 021037 182 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 261 (318)
Q Consensus 182 Pa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~~~~~S~iYG~~HLLRL~v 261 (318)
+...|+.+++++|++.. ... ....+......+..|+...||...|-... ..++..++.
T Consensus 4 ~~~~t~~~~~~~wl~~~-~~~--~~~T~~~y~~~l~~~i~~~~g~~~l~~It-------------------~~~i~~~~~ 61 (121)
T 2kkv_A 4 SGAYTFETIAREWHESN-KRW--SEDHRSRVLRYLELYIFPHIGSSDIRQLK-------------------TSHLLAPIK 61 (121)
T ss_dssp CCCCSHHHHHHHHHTTC-CSS--CHHHHHHHHHHHHHHHSSSSTTSCTTCCC-------------------SGGGHHHHH
T ss_pred cccCcHHHHHHHHHHHc-CCC--CHHHHHHHHHHHHhhcCchhcCCCHHHcC-------------------HHHHHHHHH
Confidence 45689999999999876 211 11122222233444444444443222111 233444444
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 262 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 262 kLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
.|-. .....+++.+...|..|++|..++
T Consensus 62 ~l~~-----~~s~~t~~~~~~~l~~~~~~A~~~ 89 (121)
T 2kkv_A 62 EVDT-----SGKHDVAQRLQQRVTAIMRYAVQN 89 (121)
T ss_dssp HHHH-----TTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3321 125678899999999999998864
No 121
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=37.59 E-value=63 Score=25.95 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=26.7
Q ss_pred CCCCEEEEEeC--CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 29 SEGERVLAYHG--PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 29 ~~ge~v~~~~~--~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
-+|-+|++.|. +.+|..+|...... .+|.|-|..
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~~~---~ky~V~FdD 41 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDVGA---GKYKLLFDD 41 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEET---TEEEEEETT
T ss_pred ccceEEEEEeccCCcCcccEEEEeccC---CeEEEEEcC
Confidence 47899999995 57999999886433 479998864
No 122
>2fmm_A Chromobox protein homolog 1; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: b.34.13.2 PDB: 1s4z_A
Probab=37.58 E-value=52 Score=23.82 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=27.9
Q ss_pred eeEEEEEEecCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 44 EAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 44 ~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
..+|+.....+|...|+|++.|-.. =+|||...+.
T Consensus 18 ~ekI~g~~~~~Gel~fLvkWkg~d~--~dlVpa~~a~ 52 (74)
T 2fmm_A 18 PERIIGATDSSGELMFLMKWKNSDE--ADLVPAKEAN 52 (74)
T ss_dssp EEEEEEEEEETTEEEEEEEETTCSC--CEEEEHHHHH
T ss_pred ceEEEEEEcCCCcEEEEEEECCCCc--ccEEEHHHHh
Confidence 3478888888999999999999765 2599976553
No 123
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=33.09 E-value=2.4e+02 Score=24.41 Aligned_cols=143 Identities=13% Similarity=0.143 Sum_probs=67.8
Q ss_pred EecChhHHHHHHHHH-HHhhhCCceeeCCCCCC-HHHHHHHHHHhhhccCCcch-hhHHHHHHHHHHHHHhhcCcccCCh
Q 021037 155 IQIPSTLKKQLVDDW-EFVNQQDKLVKLPRLPN-VDDILTKYLQYRSKKDGMMT-DSIGEILKGIRCYFDKALPVMLLYK 231 (318)
Q Consensus 155 i~iP~~Lk~iLvdD~-~~i~~~~~L~~LPa~~t-V~~IL~~y~~~~~~~~~~~~-~~~~e~~~gl~~yFn~~L~~~LLY~ 231 (318)
..+|..+..++..=. .-+.. --|+++|...+ |.++.+.|-.... . .-.. ..+..++.-|+.||... +.-|+-.
T Consensus 60 ~~vP~iv~~~i~~l~~~gl~~-eGIfR~sG~~~~i~~L~~~~d~~~~-~-~~~~~~dv~~va~lLK~flReL-PePLl~~ 135 (242)
T 1ow3_A 60 EPIPIVLRETVAYLQAHALTT-EGIFRRSANTQVVREVQQKYNMGLP-V-DFDQYNELHLPAVILKTFLREL-PEPLLTF 135 (242)
T ss_dssp CSSCHHHHHHHHHHHHHCTTC-TTTTTSCCCHHHHHHHHHHHHTTCC-C-CGGGSSCTHHHHHHHHHHHHHS-SSCTTCG
T ss_pred CCCCHHHHHHHHHHHHcCCCC-CceeeeCCcHHHHHHHHHHHhcCCC-C-CcccccchHHHHHHHHHHHHhC-CCCCCCH
Confidence 367887777652110 11222 23778876643 4454444433211 1 1111 12233455577777654 4444332
Q ss_pred hhHhhHhHhhc--------------CCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHH-----------------
Q 021037 232 KERQQYHDLVV--------------DNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRL----------------- 280 (318)
Q Consensus 232 ~ER~QY~~~~~--------------~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l----------------- 280 (318)
.=-.++.++.. ...++....=..+|+++|.++-.-=....|+..++..+
T Consensus 136 ~ly~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~~~~ 215 (242)
T 1ow3_A 136 DLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKA 215 (242)
T ss_dssp GGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHCCCSSHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCcCCCCHHHhHHhhcchhCCCCCccccHHH
Confidence 11111111110 22233334444566666665544333345655554331
Q ss_pred HHHHHHHHHHHHHchhccccc
Q 021037 281 QQKMIDFLKFMQKNQSTFFLS 301 (318)
Q Consensus 281 ~~~l~~fL~fL~~n~~~~f~~ 301 (318)
+..+..|++||-+|.+.+|.+
T Consensus 216 ~~~~~~~v~~LI~~~~~iF~~ 236 (242)
T 1ow3_A 216 INPINTFTKFLLDHQGELFPS 236 (242)
T ss_dssp HHHHHHHHHHHHHTHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHcCC
Confidence 134678999999999999973
No 124
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=31.37 E-value=2.3e+02 Score=23.58 Aligned_cols=21 Identities=19% Similarity=0.404 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHchhccc
Q 021037 279 RLQQKMIDFLKFMQKNQSTFF 299 (318)
Q Consensus 279 ~l~~~l~~fL~fL~~n~~~~f 299 (318)
.+...+..|++||-+|.+.+|
T Consensus 181 ~~~~~~~~iv~~LI~~~~~IF 201 (201)
T 3msx_B 181 EFTKKVSLLIQFLIENCLRIF 201 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhhHhhC
Confidence 345667778999999998877
No 125
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=31.14 E-value=24 Score=33.10 Aligned_cols=45 Identities=13% Similarity=0.287 Sum_probs=32.3
Q ss_pred CCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecCCCCCcce
Q 021037 27 LFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLGWNKNWDE 72 (318)
Q Consensus 27 ~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~Gwn~r~DE 72 (318)
.|++|| |+||+...+.-|--+.-........|-+.|.||+.|||.
T Consensus 237 d~epGD-av~F~~~tlHga~plgn~~~~rRRAfS~RfvGDDaryd~ 281 (344)
T 3nnf_A 237 EYNLGD-AFFFNKYVLHQSVPLKPGLHKLRRAFVIRLVDYDTRVDE 281 (344)
T ss_dssp CBCTTC-EEEEETTCEEEECCBCTTSCSCEEEEEEEEEETTCBBCH
T ss_pred cCCCCc-EEEEecceeecCCCCCCCCccceeEEEEEEecCcceehH
Confidence 468999 889998888777422222222344799999999999995
No 126
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=30.05 E-value=2.6e+02 Score=23.86 Aligned_cols=145 Identities=14% Similarity=0.228 Sum_probs=68.8
Q ss_pred ecChhHHHHHHH--HHHHhhhCCceeeCCCCC-CHHHHHHHHHHhhhccCCcch--hhHHHHHHHHHHHHHhhcCcccCC
Q 021037 156 QIPSTLKKQLVD--DWEFVNQQDKLVKLPRLP-NVDDILTKYLQYRSKKDGMMT--DSIGEILKGIRCYFDKALPVMLLY 230 (318)
Q Consensus 156 ~iP~~Lk~iLvd--D~~~i~~~~~L~~LPa~~-tV~~IL~~y~~~~~~~~~~~~--~~~~e~~~gl~~yFn~~L~~~LLY 230 (318)
.+|..+..++.. ..- ++ + -|+++|... .|.++.+.|-........... ..+..++.-|+.||... +.-|+-
T Consensus 36 ~vP~iv~~~i~~i~~~g-l~-e-GIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreL-PePLl~ 111 (229)
T 3iug_A 36 EVPQVLQSCTAFIERYG-IV-D-GIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFREL-PNPLLT 111 (229)
T ss_dssp SSCHHHHHHHHHHHHHC-CS-T-TTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHC-SSCTTC
T ss_pred CCCHHHHHHHHHHHHcC-CC-C-CCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHC-CCCCcC
Confidence 588887776322 111 12 2 377787664 455555555432111101111 13445666677777654 333332
Q ss_pred hhhHhhHh----------------HhhcCCCCCCcccchHHHHHHHhhhhHHhccCCCCHHHHHHHH-------------
Q 021037 231 KKERQQYH----------------DLVVDNVSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQ------------- 281 (318)
Q Consensus 231 ~~ER~QY~----------------~~~~~~~~~S~iYG~~HLLRL~vkLP~ll~~~~~d~~~~~~l~------------- 281 (318)
..--..+. .++ ...++....=+.+|+++|.++-.--....|+..++..+.
T Consensus 112 ~~ly~~~~~~~~~~~~~~~~~~l~~ll-~~LP~~n~~~L~~L~~~L~~V~~~s~~NkM~~~NLAivf~P~Ll~~~~~~~~ 190 (229)
T 3iug_A 112 YQLYEKFSDAVSAATDEERLIKIHDVI-QQLPPPHYRTLEFLMRHLSLLADYCSITNMHAKNLAIVWAPNLLRSKQIESA 190 (229)
T ss_dssp TTTHHHHHHHHTSSSHHHHHHHHHHHH-TTSCHHHHHHHHHHHHHHHHHHTTHHHHCCCHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-HHCCHHHHHHHHHHHHHHHHHHhccCccCCChHHHHHHHhccccCCCccccc
Confidence 21111111 122 222344444455666666655443333455555544321
Q ss_pred -----------HHHHHHHHHHHHchhcccccCCCC
Q 021037 282 -----------QKMIDFLKFMQKNQSTFFLSAYDG 305 (318)
Q Consensus 282 -----------~~l~~fL~fL~~n~~~~f~~dY~~ 305 (318)
.....++.||-+|.+.+|.++-..
T Consensus 191 ~~~~~~~~~~~~~~~~vve~LI~~~~~iF~~~~~~ 225 (229)
T 3iug_A 191 CFSGTAAFMEVRIQSVVVEFILNHVDVLFSGRISM 225 (229)
T ss_dssp -------------CHHHHHHHHHTHHHHTC-----
T ss_pred ccchHHHHHHHHHHHHHHHHHHHhHHHhCCCcHHh
Confidence 122569999999999999865443
No 127
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=29.63 E-value=2.8e+02 Score=24.06 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHchhccccc
Q 021037 283 KMIDFLKFMQKNQSTFFLS 301 (318)
Q Consensus 283 ~l~~fL~fL~~n~~~~f~~ 301 (318)
....|+++|-+|.+.+|.+
T Consensus 227 ~~~~ive~LI~~~~~iF~n 245 (246)
T 3fk2_A 227 TYQTIIELFIQQCPFFFYN 245 (246)
T ss_dssp HHHHHHHHHHHTHHHHHC-
T ss_pred HHHHHHHHHHHhHHHhcCC
Confidence 4668999999999998863
No 128
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=29.61 E-value=99 Score=24.78 Aligned_cols=36 Identities=25% Similarity=0.228 Sum_probs=28.3
Q ss_pred CCCCCCEEEEEeC-CceeeeEEEEEEecCCeeeEEEEecC
Q 021037 27 LFSEGERVLAYHG-PCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 27 ~f~~ge~v~~~~~-~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
.=.+|+.|.+.|. |.+|.|+.+..... ..|-|-|..
T Consensus 64 pP~~G~~V~V~W~DG~~y~a~f~g~~~~---~~YtV~FeD 100 (123)
T 2xdp_A 64 PPAEGEVVQVKWPDGKLYGAKYFGSNIA---HMYQVEFED 100 (123)
T ss_dssp CCCTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEECTT
T ss_pred CCCCCCEEEEEcCCCCEEeEEEeeeeeE---EEEEEEECC
Confidence 3468999999995 99999999987653 467777654
No 129
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=27.58 E-value=1.3e+02 Score=23.94 Aligned_cols=35 Identities=26% Similarity=0.222 Sum_probs=27.2
Q ss_pred CCCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEecC
Q 021037 28 FSEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 28 f~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
=.+|+.|.+.| +|..|.|+.+..... ..|-|-|..
T Consensus 64 P~~G~~V~V~W~DG~~y~a~f~g~~~~---~~Y~V~feD 99 (118)
T 2qqr_A 64 PAEGEVVQVRWTDGQVYGAKFVASHPI---QMYQVEFED 99 (118)
T ss_dssp CCTTCEEEEECTTSCEEEEEEEEEEEE---EEEEEEETT
T ss_pred CCCCCEEEEEcCCCCEeeeEEeceeEE---EEEEEEECC
Confidence 36799999999 599999999876543 467777654
No 130
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=26.16 E-value=80 Score=22.59 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=19.2
Q ss_pred CCCCCCCEEEEEeCCc-eeeeEEEEEEecCCe-eeEEEEecCCCCCcceeeecCccc
Q 021037 26 SLFSEGERVLAYHGPC-IYEAKVQKAELRKKE-WRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 26 ~~f~~ge~v~~~~~~~-~y~Akil~~~~~~~~-~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+.|++||.|+--..|. .|.+ |..+...+.. ..|.++|.+ +. -=.||.+++.
T Consensus 1 ~~l~~GD~VVh~~hGiG~~~g-i~~~~v~g~~~ey~~l~y~~-~~--~l~VPv~~~~ 53 (71)
T 3mlq_E 1 GPHMPGDYLIHPEHGVGQYLG-LETREVLGVKRDYLVLRYKG-EG--KLYLPVEQLP 53 (71)
T ss_dssp ---------------CEEEEE-EEEEEETTEEEEEEEEEETT-TE--EEEEESSSCC
T ss_pred CcCCCCCEEEECCCeeEEEeE-EEEEEeCCeeEEEEEEEECC-CC--EEEEEhhhhc
Confidence 3689999888755443 3444 4444443323 356689986 21 3578887654
No 131
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=26.06 E-value=3.4e+02 Score=23.92 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=14.8
Q ss_pred HHHHHHHHHHchhcccc
Q 021037 284 MIDFLKFMQKNQSTFFL 300 (318)
Q Consensus 284 l~~fL~fL~~n~~~~f~ 300 (318)
...+++||-+|.+.+|.
T Consensus 242 ~~~vve~LI~~~~~IF~ 258 (271)
T 3eap_A 242 QAAVVQTLIDYASDIGR 258 (271)
T ss_dssp HHHHHHHHHHTGGGTTC
T ss_pred HHHHHHHHHHhHHHHhC
Confidence 35789999999999997
No 132
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.18 E-value=36 Score=23.46 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=23.8
Q ss_pred CCCCCCCCCEEEEEeCCc-eeeeEEEEEEe
Q 021037 24 NSSLFSEGERVLAYHGPC-IYEAKVQKAEL 52 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~~-~y~Akil~~~~ 52 (318)
+...|.+||.|.+..|+. -..|+|.+++.
T Consensus 4 ~~~~f~~GD~V~V~~Gpf~g~~G~V~evd~ 33 (59)
T 2e6z_A 4 GSSGFQPGDNVEVCEGELINLQGKILSVDG 33 (59)
T ss_dssp CCSSCCTTSEEEECSSTTTTCEEEECCCBT
T ss_pred ccccCCCCCEEEEeecCCCCCEEEEEEEeC
Confidence 345699999999999975 47899998875
No 133
>2ee1_A Chromodomain helicase-DNA-binding protein 4; EC 3.6.1.-, ATP- dependent helicase CHD4, CHD-4, MI-2 autoantigen 218 kDa protein, MI2-beta; NMR {Homo sapiens}
Probab=24.57 E-value=76 Score=22.37 Aligned_cols=33 Identities=12% Similarity=0.326 Sum_probs=26.3
Q ss_pred EEEEEEe-cCCeeeEEEEecCCCCCcceeeecCc
Q 021037 46 KVQKAEL-RKKEWRYYVHYLGWNKNWDEWVGVDR 78 (318)
Q Consensus 46 kil~~~~-~~~~~~Y~VHY~Gwn~r~DEWV~~~r 78 (318)
+|+..+. .+|..+|+|-..|+...=..|=+++.
T Consensus 16 RIi~~r~~~~g~~eYLVKWkgl~y~e~TWE~~~~ 49 (64)
T 2ee1_A 16 RILNHSVDKKGHVHYLIKWRDLPYDQASWESEDV 49 (64)
T ss_dssp CCCEEEECTTCCEEEEECCTTSCTTTCEEEETTC
T ss_pred EEEEEEecCCCCEEEEEEEcCCCcccCcccCCcc
Confidence 4555554 46788999999999999889999883
No 134
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=24.01 E-value=1.2e+02 Score=25.13 Aligned_cols=41 Identities=27% Similarity=0.479 Sum_probs=31.0
Q ss_pred CCCCCCCCEEEEEeCCc-eeeeEEEEEEecCCeeeEEEEecC
Q 021037 25 SSLFSEGERVLAYHGPC-IYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 25 ~~~f~~ge~v~~~~~~~-~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
...|.+||+|.+..|+. -++|.|.+++..++...-.|.-.|
T Consensus 125 ~~~~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifg 166 (181)
T 2jvv_A 125 KTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFG 166 (181)
T ss_dssp CCCCCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETT
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECC
Confidence 34799999999999975 489999999876655544555444
No 135
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=23.67 E-value=2.2e+02 Score=20.80 Aligned_cols=87 Identities=7% Similarity=0.045 Sum_probs=48.5
Q ss_pred CCCCCHHHHHHHHHHhhhccCCcchhhHHHHHHHHHHHHHhhcCcccCChhhHhhHhHhhcCCCCCCcccchHHHHHHHh
Q 021037 182 PRLPNVDDILTKYLQYRSKKDGMMTDSIGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNVSPSTIYGAEHLLRLFV 261 (318)
Q Consensus 182 Pa~~tV~~IL~~y~~~~~~~~~~~~~~~~e~~~gl~~yFn~~L~~~LLY~~ER~QY~~~~~~~~~~S~iYG~~HLLRL~v 261 (318)
+...|+.+++++|++....... ...+......+..++-..||..-|-.. -..|+.+++.
T Consensus 2 ~~~~t~~~~~~~wl~~~~~~~~--~~T~~~y~~~l~~~i~~~lg~~~l~~I-------------------t~~~i~~~~~ 60 (118)
T 2kj8_A 2 SNNNSFSAIYKEWYEHKKQVWS--VGYATELAKMFDDDILPIIGGLEIQDI-------------------EPMQLLEVIR 60 (118)
T ss_dssp CSTTBHHHHHHHHHHHHTTTSC--HHHHHHHHHHHHHHHHHHHTTSBTTSC-------------------CHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHcccCC--HHHHHHHHHHHHHHhhHHhcCCcHHHC-------------------CHHHHHHHHH
Confidence 3567999999999987542111 111222222333343333444322222 2345555555
Q ss_pred hhhHHhccCCCCHHHHHHHHHHHHHHHHHHHHc
Q 021037 262 KLPELLAYVNIEDETLIRLQQKMIDFLKFMQKN 294 (318)
Q Consensus 262 kLP~ll~~~~~d~~~~~~l~~~l~~fL~fL~~n 294 (318)
.|-+ .-...+++.+...|..|++|..++
T Consensus 61 ~l~~-----~~s~~t~~~~~~~l~~~~~~Av~~ 88 (118)
T 2kj8_A 61 RFED-----RGAMERANKARRRCGEVFRYAIVT 88 (118)
T ss_dssp HHHT-----TTCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHH-----cCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4321 125678889999999999998764
No 136
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=23.56 E-value=64 Score=27.27 Aligned_cols=35 Identities=11% Similarity=0.335 Sum_probs=28.0
Q ss_pred EEEEEEe-----cCCeeeEEEEecCCCCCcceeeecCccc
Q 021037 46 KVQKAEL-----RKKEWRYYVHYLGWNKNWDEWVGVDRLL 80 (318)
Q Consensus 46 kil~~~~-----~~~~~~Y~VHY~Gwn~r~DEWV~~~ri~ 80 (318)
+|++.+. ..+...|+|-+.|+...-.-|-+++.|.
T Consensus 125 rIi~~r~~~~~~~~~~~~YLVKWkgl~y~e~TWE~~~~~~ 164 (177)
T 2h1e_A 125 RIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIV 164 (177)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEETTSCSTTCEEEEHHHHH
T ss_pred EEEEEeeecccCCCCcEEEEEEeCCCCcccccccChHHhh
Confidence 5666664 4678899999999998888999987653
No 137
>2b2y_A CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 b.34.13.2 PDB: 2b2u_A* 2b2v_A* 2b2w_A 2b2t_A*
Probab=23.04 E-value=58 Score=27.82 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=27.5
Q ss_pred EEEEEEe---cCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 46 KVQKAEL---RKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 46 kil~~~~---~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
+||+.+. ..|...|+|.+.|+...=.-|.+++.|
T Consensus 135 rIi~~r~~~~~~g~~~yLVKWkgl~Y~e~TWE~~~~i 171 (187)
T 2b2y_A 135 RIIAHSNQKSAAGYPDYYCKWQGLPYSECSWEDGALI 171 (187)
T ss_dssp EEEEEEEEECTTSCEEEEEEETTSCGGGCEEECHHHH
T ss_pred EEEEeeeecCCCCcEEEEEEECCCChhhCcccchhhh
Confidence 5777766 567899999999999777789998754
No 138
>1dtc_A Acetyl-delta-toxin; NMR {Staphylococcus aureus} SCOP: j.7.1.1 PDB: 2dtb_A 2kam_A*
Probab=22.79 E-value=60 Score=18.75 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHchhcc
Q 021037 278 IRLQQKMIDFLKFMQKNQSTF 298 (318)
Q Consensus 278 ~~l~~~l~~fL~fL~~n~~~~ 298 (318)
..|.+.+.+|++|+.+...+|
T Consensus 3 ~DIisTIgdfvKlI~~TV~KF 23 (26)
T 1dtc_A 3 QDIISTIGDLVKWIIDTVNKF 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 357788999999999887765
No 139
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=26.99 E-value=20 Score=28.64 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=30.3
Q ss_pred CCCCCCCCCEEEEEeCCceeeeEEEEEEecCCeeeEEEEecC
Q 021037 24 NSSLFSEGERVLAYHGPCIYEAKVQKAELRKKEWRYYVHYLG 65 (318)
Q Consensus 24 ~~~~f~~ge~v~~~~~~~~y~Akil~~~~~~~~~~Y~VHY~G 65 (318)
+||-+.+|.-|-+.+.|-+.||||..+... .+..|-|..
T Consensus 3 dPp~L~VGTeVSAKyrGAFCEAkIk~V~r~---vKcKV~~k~ 41 (118)
T 2lcd_A 3 EPAYLTVGTDVSAKYRGAFCEAKIKTVKRL---VKVKVLLKQ 41 (118)
Confidence 356789999999999999999999988753 344555544
No 140
>1y71_A Kinase-associated protein B; structural genomics, midwest CE structural genomics, MCSG, protein structure initiative, PS unknown function; 1.95A {Bacillus cereus} SCOP: b.34.16.1
Probab=20.54 E-value=1.6e+02 Score=23.78 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEeCCceeeeEEEEEEe
Q 021037 27 LFSEGERVLAYHGPCIYEAKVQKAEL 52 (318)
Q Consensus 27 ~f~~ge~v~~~~~~~~y~Akil~~~~ 52 (318)
.|.+|+.|..++..-.|-++|.+.+.
T Consensus 7 ~~~~g~~v~~~yKTG~YigeI~e~~~ 32 (130)
T 1y71_A 7 TFEIGEIVTGIYKTGKYIGEVTNSRP 32 (130)
T ss_dssp CCCTTCEEEEEETTEEEEEEEEEEET
T ss_pred cCCccceeEEEEecceeEEEEEeecC
Confidence 58999999999987788888886554
No 141
>3i3c_A Chromobox protein homolog 5; CBX5, chromo shadow domain, structural genomics, structural consortium, SGC, centromere, nucleus, phosphoprotein; 2.48A {Homo sapiens} SCOP: b.34.13.2
Probab=20.48 E-value=1e+02 Score=22.44 Aligned_cols=34 Identities=9% Similarity=0.040 Sum_probs=23.7
Q ss_pred eeEEEEEEecCCeeeEEEEecCCCCCcceeeecCcc
Q 021037 44 EAKVQKAELRKKEWRYYVHYLGWNKNWDEWVGVDRL 79 (318)
Q Consensus 44 ~Akil~~~~~~~~~~Y~VHY~Gwn~r~DEWV~~~ri 79 (318)
..+|+.....+|...|+|.+.|... - +|||...+
T Consensus 25 ~EkIlg~t~~~Gel~fLVKWKg~~e-~-dlVpa~ea 58 (75)
T 3i3c_A 25 PEKIIGATDSCGDLMFLMKWKDTDE-A-DLVLAKEA 58 (75)
T ss_dssp EEEEEEEEC---CCEEEEEETTSSC-E-EEEEHHHH
T ss_pred eeEEeeEEccCCcEEEEEEECCCCh-h-ceEEHHHH
Confidence 3478888888889999999999776 2 48886433
No 142
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=20.29 E-value=2.5e+02 Score=21.86 Aligned_cols=36 Identities=8% Similarity=-0.188 Sum_probs=25.1
Q ss_pred CCCCEEEEEe-CCceeeeEEEEEEecCCeeeEEEEec
Q 021037 29 SEGERVLAYH-GPCIYEAKVQKAELRKKEWRYYVHYL 64 (318)
Q Consensus 29 ~~ge~v~~~~-~~~~y~Akil~~~~~~~~~~Y~VHY~ 64 (318)
++|++|++.+ .|.....+|..+.......-|.|.-.
T Consensus 26 ~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t~ 62 (139)
T 2in0_A 26 RKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIA 62 (139)
T ss_dssp TCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEET
T ss_pred cCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEeC
Confidence 6799999996 47777777777766544555666543
Done!