BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 021039
         (318 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
           Mycobacterium Bovis. Northeast Structural Genomics
           Consortium Target Mbr243c (24-155)
          Length = 140

 Score = 28.5 bits (62), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 67  LLVVKRVVQNLWLQYIRGEKSDRIRAYQVWPGNNVFINLILVSTTDPGIIPRNDQANIED 126
           LLVVKR   N   +++  +    I +    P +++F++ + VS         N++ N+ D
Sbjct: 34  LLVVKRG-PNAGSRFLLDQA---ITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVD 89

Query: 127 VGTSDGTRSKR------VMINGVEMKLKYCRIC 153
           VG+ +GT   R      V+ NG E+++   R+ 
Sbjct: 90  VGSLNGTYVNREPVDSAVLANGDEVQIGKFRLV 122


>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
          Length = 162

 Score = 28.1 bits (61), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 48/98 (48%), Gaps = 10/98 (10%)

Query: 67  LLVVKRVVQNLWLQYIRGEKSDRIRAYQVWPGNNVFINLILVSTTDPGIIPRNDQANIED 126
           LLVVKR   N   +++  +    I +    P +++F++ + VS         N++ N+ D
Sbjct: 57  LLVVKRG-PNAGSRFLLDQA---ITSAGRHPDSDIFLDDVTVSRRHAEFRLENNEFNVVD 112

Query: 127 VGTSDGTRSKR------VMINGVEMKLKYCRICKIFRP 158
           VG+ +GT   R      V+ NG E+++   R+  +  P
Sbjct: 113 VGSLNGTYVNREPVDSAVLANGDEVQIGKFRLVFLTGP 150


>pdb|1DIL|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Apana
           And Epana Inhibitors
 pdb|1DIM|A Chain A, Sialidase From Salmonella Typhimurium Complexed With Epana
           Inhibitor
 pdb|2SIL|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
           And Its Complex With A Transition State Analogue At 1.6
           Angstroms Resolution
 pdb|2SIM|A Chain A, The Structures Of Salmonella Typhimurium Lt2 Neuraminidase
           And Its Complex With A Transition State Analogue At 1.6
           Angstroms Resolution
          Length = 381

 Score = 27.7 bits (60), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 104 NLILVSTTDPGIIPRNDQANIEDVGTSDGTRSKRVMINGVEMKLK 148
           +L+L  +TD G+     + NI D+ T +GT S   M+ GV   L+
Sbjct: 140 DLVLYKSTDDGVTFSKVETNIHDIVTKNGTIS--AMLGGVGSGLQ 182


>pdb|3SIL|A Chain A, Sialidase From Salmonella Typhimurium
          Length = 379

 Score = 27.7 bits (60), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 104 NLILVSTTDPGIIPRNDQANIEDVGTSDGTRSKRVMINGVEMKLK 148
           +L+L  +TD G+     + NI D+ T +GT S   M+ GV   L+
Sbjct: 138 DLVLYKSTDDGVTFSKVETNIHDIVTKNGTIS--AMLGGVGSGLQ 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.136    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,187,083
Number of Sequences: 62578
Number of extensions: 359316
Number of successful extensions: 863
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 863
Number of HSP's gapped (non-prelim): 6
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)