Query 021039
Match_columns 318
No_of_seqs 254 out of 1613
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 11:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021039.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021039hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayja1 g.41.8.7 (A:1-56) Ribo 79.2 0.45 3.3E-05 30.7 1.9 25 146-170 18-42 (56)
2 d2dmda2 g.37.1.1 (A:8-33) Zinc 72.1 0.47 3.5E-05 25.1 0.5 15 162-176 2-16 (26)
3 d2dkta2 g.93.1.1 (A:82-137) RI 68.5 0.47 3.4E-05 30.8 -0.1 26 148-173 18-46 (56)
4 d2adra2 g.37.1.1 (A:131-161) A 67.6 0.62 4.5E-05 26.1 0.3 14 162-175 2-15 (31)
5 d2pg3a1 c.26.2.1 (A:1-230) Que 60.2 0.92 6.7E-05 36.9 0.2 24 148-173 183-206 (230)
6 d1vfya_ g.50.1.1 (A:) vps27p p 59.7 1.6 0.00012 28.9 1.4 24 149-172 7-32 (67)
7 d1joca1 g.50.1.1 (A:1348-1411) 58.5 2.2 0.00016 28.0 1.9 26 147-172 8-35 (64)
8 d2dkta2 g.93.1.1 (A:82-137) RI 56.9 1.7 0.00012 28.0 1.0 41 148-188 3-47 (56)
9 d1njqa_ g.37.1.3 (A:) SUPERMAN 55.1 2 0.00014 25.3 1.0 12 158-169 2-13 (37)
10 d1wfka_ g.50.1.1 (A:) Zinc fin 49.6 3.1 0.00023 29.1 1.6 25 147-171 9-35 (88)
11 d1dvpa2 g.50.1.1 (A:149-220) H 47.4 3.5 0.00026 27.6 1.5 25 148-172 14-40 (72)
12 d2c6aa1 g.41.11.1 (A:290-335) 41.3 5.3 0.00038 24.3 1.4 20 148-167 14-33 (46)
13 d1olza3 g.16.2.1 (A:481-536) S 37.9 2 0.00015 27.5 -1.0 23 165-187 6-31 (56)
14 d2cr8a1 g.41.11.1 (A:8-48) MDM 32.9 8.9 0.00065 22.7 1.4 19 149-167 6-24 (41)
15 d1y02a2 g.50.1.1 (A:20-70) Rif 31.4 5.9 0.00043 24.6 0.5 12 159-170 14-25 (51)
16 d1twfi1 g.41.3.1 (I:1-49) RBP9 31.3 7.7 0.00056 24.0 1.0 33 147-180 4-44 (49)
17 d2adra1 g.37.1.1 (A:102-130) A 28.8 8 0.00058 21.0 0.7 17 160-176 1-17 (29)
18 d1tota1 g.44.1.6 (A:1-52) CREB 28.3 8.6 0.00063 24.0 0.9 22 147-169 6-27 (52)
19 d1zbdb_ g.50.1.1 (B:) Effector 24.5 12 0.00089 27.3 1.3 25 147-171 48-75 (124)
20 d2dlqa2 g.37.1.1 (A:35-62) GLI 23.9 15 0.0011 19.3 1.2 13 162-174 2-14 (28)
21 d1a1ia2 g.37.1.1 (A:132-159) Z 20.6 12 0.00089 20.1 0.4 17 160-176 2-18 (28)
22 d1q5wa_ g.41.11.1 (A:) Npl4 {R 20.3 24 0.0018 19.2 1.6 20 149-168 8-27 (31)
No 1
>d2ayja1 g.41.8.7 (A:1-56) Ribosomal protein L40e {Sulfolobus solfataricus [TaxId: 2287]}
Probab=79.21 E-value=0.45 Score=30.66 Aligned_cols=25 Identities=32% Similarity=0.747 Sum_probs=22.0
Q ss_pred ceeeccccccccCCCCccCCCCCcc
Q 021039 146 KLKYCRICKIFRPPRSCHCAVCDNC 170 (318)
Q Consensus 146 ~~~~C~tC~~~kP~Rs~HCs~C~~C 170 (318)
..+.|..|...-|+|+..|+.|+.=
T Consensus 18 ~k~ICrkC~AR~p~rAt~CRKCg~~ 42 (56)
T d2ayja1 18 LKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp CCEEETTTCCEECTTCSSCTTTCCC
T ss_pred hhHHHhhccccCCccccccccCCCC
Confidence 4589999999999999999988753
No 2
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=72.11 E-value=0.47 Score=25.14 Aligned_cols=15 Identities=33% Similarity=0.957 Sum_probs=12.9
Q ss_pred ccCCCCCcccccccc
Q 021039 162 CHCAVCDNCVEKFDH 176 (318)
Q Consensus 162 ~HCs~C~~CV~r~DH 176 (318)
|.|.+|++|..|-|.
T Consensus 2 hkc~~c~kcfsrkdk 16 (26)
T d2dmda2 2 HKCEVCGKCFSRKDK 16 (26)
T ss_dssp CCBTTTTBCCCCHHH
T ss_pred CccchhhhHhcchhH
Confidence 679999999998774
No 3
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=68.50 E-value=0.47 Score=30.77 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=14.9
Q ss_pred eecccccc---ccCCCCccCCCCCccccc
Q 021039 148 KYCRICKI---FRPPRSCHCAVCDNCVEK 173 (318)
Q Consensus 148 ~~C~tC~~---~kP~Rs~HCs~C~~CV~r 173 (318)
-+|..|.+ -...--.||..||.|+..
T Consensus 18 yHC~~CgiCRvG~~~~ffHC~~C~~C~~~ 46 (56)
T d2dkta2 18 YHCESCGICRIGPKEDFFHCLKCNLCLTT 46 (56)
T ss_dssp EEETTTTEEEESCGGGEEEETTTTEEEEG
T ss_pred ccCCCCCceeecCCccccccCccccccCc
Confidence 34444443 334456777777777754
No 4
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=67.60 E-value=0.62 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.736 Sum_probs=12.6
Q ss_pred ccCCCCCccccccc
Q 021039 162 CHCAVCDNCVEKFD 175 (318)
Q Consensus 162 ~HCs~C~~CV~r~D 175 (318)
..|.+|+||-.|.|
T Consensus 2 f~C~~C~R~FaRrD 15 (31)
T d2adra2 2 YPCGLCNRAFTRRD 15 (31)
T ss_dssp EECTTTCCEESSHH
T ss_pred cccccccchhhHHH
Confidence 57999999999988
No 5
>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}
Probab=60.20 E-value=0.92 Score=36.87 Aligned_cols=24 Identities=17% Similarity=0.479 Sum_probs=20.0
Q ss_pred eeccccccccCCCCccCCCCCccccc
Q 021039 148 KYCRICKIFRPPRSCHCAVCDNCVEK 173 (318)
Q Consensus 148 ~~C~tC~~~kP~Rs~HCs~C~~CV~r 173 (318)
....+| ++|.|.+||..|..|++|
T Consensus 183 ~~T~SC--y~~~~~~~CG~C~~C~~R 206 (230)
T d2pg3a1 183 YHTLTC--YNGIKGDGCGQCAACHLR 206 (230)
T ss_dssp HHCCCC--TTSCCTTTTSCSHHHHHH
T ss_pred hccCCC--CCCCCCCCCCCCHhHHHH
Confidence 445577 678888999999999998
No 6
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=59.69 E-value=1.6 Score=28.94 Aligned_cols=24 Identities=29% Similarity=0.576 Sum_probs=17.0
Q ss_pred ecccccc--ccCCCCccCCCCCcccc
Q 021039 149 YCRICKI--FRPPRSCHCAVCDNCVE 172 (318)
Q Consensus 149 ~C~tC~~--~kP~Rs~HCs~C~~CV~ 172 (318)
-|..|+. ..-.|-|||+.||+-+-
T Consensus 7 ~C~~C~~~F~~~~rkhhCr~CG~~fC 32 (67)
T d1vfya_ 7 ACMICSKKFSLLNRKHHCRSCGGVFC 32 (67)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEEC
T ss_pred ccccCCCcccCcccccccccCCCEec
Confidence 4777774 33458899999998543
No 7
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.51 E-value=2.2 Score=27.97 Aligned_cols=26 Identities=27% Similarity=0.548 Sum_probs=17.9
Q ss_pred eeecccccc--ccCCCCccCCCCCcccc
Q 021039 147 LKYCRICKI--FRPPRSCHCAVCDNCVE 172 (318)
Q Consensus 147 ~~~C~tC~~--~kP~Rs~HCs~C~~CV~ 172 (318)
..-|..|.. .--.|-|||+.||+-+=
T Consensus 8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~C 35 (64)
T d1joca1 8 VQNCMACGKGFSVTVRRHHCRQCGNIFC 35 (64)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CCcCcCcCCcccCCccccchhhhCCeec
Confidence 356777764 23347899999998553
No 8
>d2dkta2 g.93.1.1 (A:82-137) RING finger and CHY zinc finger domain-containing protein 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=56.88 E-value=1.7 Score=28.04 Aligned_cols=41 Identities=32% Similarity=0.785 Sum_probs=30.9
Q ss_pred eeccccccccCC-CCccCCCCCccccccc---ccccccccccccc
Q 021039 148 KYCRICKIFRPP-RSCHCAVCDNCVEKFD---HHCPWIGQCIALR 188 (318)
Q Consensus 148 ~~C~tC~~~kP~-Rs~HCs~C~~CV~r~D---HHC~Wl~nCVG~~ 188 (318)
-||..|+.+--. ..+||..||-|-..-. -||.==|.|+...
T Consensus 3 YfC~iC~l~dddk~~yHC~~CgiCRvG~~~~ffHC~~C~~C~~~~ 47 (56)
T d2dkta2 3 YYCSICHLFDKDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 47 (56)
T ss_dssp EECSSSCCEECSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred eECCcCCcccCCCCcccCCCCCceeecCCccccccCccccccCcc
Confidence 589999977433 4689999999986532 3898888888653
No 9
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=55.14 E-value=2 Score=25.26 Aligned_cols=12 Identities=50% Similarity=1.284 Sum_probs=11.0
Q ss_pred CCCCccCCCCCc
Q 021039 158 PPRSCHCAVCDN 169 (318)
Q Consensus 158 P~Rs~HCs~C~~ 169 (318)
|+|.+-|+.|++
T Consensus 2 p~r~~~C~~C~k 13 (37)
T d1njqa_ 2 PPRSYTCSFCKR 13 (37)
T ss_dssp CSSSEECTTTCC
T ss_pred CCCccCCCCCCC
Confidence 889999999997
No 10
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=49.57 E-value=3.1 Score=29.10 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=18.1
Q ss_pred eeecccccc--ccCCCCccCCCCCccc
Q 021039 147 LKYCRICKI--FRPPRSCHCAVCDNCV 171 (318)
Q Consensus 147 ~~~C~tC~~--~kP~Rs~HCs~C~~CV 171 (318)
...|..|+. ---.|-|||+.|++.+
T Consensus 9 ~s~C~~C~~~Fs~~~rrhhCr~CG~vf 35 (88)
T d1wfka_ 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF 35 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE
T ss_pred cCcCcccCchhccccccccccccChhh
Confidence 457888874 3345789999999843
No 11
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=47.42 E-value=3.5 Score=27.63 Aligned_cols=25 Identities=24% Similarity=0.667 Sum_probs=17.7
Q ss_pred eecccccc--ccCCCCccCCCCCcccc
Q 021039 148 KYCRICKI--FRPPRSCHCAVCDNCVE 172 (318)
Q Consensus 148 ~~C~tC~~--~kP~Rs~HCs~C~~CV~ 172 (318)
..|..|.. ---.|-|||+.||+.+-
T Consensus 14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C 40 (72)
T d1dvpa2 14 RVCHRCRVEFTFTNRKHHCRNCGQVFC 40 (72)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEEC
T ss_pred CccccCCCcccCccccccccccCCeeC
Confidence 45888874 23458899999998543
No 12
>d2c6aa1 g.41.11.1 (A:290-335) MDM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.30 E-value=5.3 Score=24.33 Aligned_cols=20 Identities=35% Similarity=0.926 Sum_probs=17.5
Q ss_pred eeccccccccCCCCccCCCC
Q 021039 148 KYCRICKIFRPPRSCHCAVC 167 (318)
Q Consensus 148 ~~C~tC~~~kP~Rs~HCs~C 167 (318)
=.|..|+..-||-..||..|
T Consensus 14 WkC~~C~~~N~Pl~ryC~rC 33 (46)
T d2c6aa1 14 WKCTSCNEMNPPLPSHCNRC 33 (46)
T ss_dssp EECTTTCCEECSSCSSCTTT
T ss_pred ccCccccccCCcchhHhHHH
Confidence 36999999999999998877
No 13
>d1olza3 g.16.2.1 (A:481-536) Semaphorin 4d {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.94 E-value=2 Score=27.53 Aligned_cols=23 Identities=39% Similarity=1.050 Sum_probs=18.6
Q ss_pred CCCCccccccccccccc---cccccc
Q 021039 165 AVCDNCVEKFDHHCPWI---GQCIAL 187 (318)
Q Consensus 165 s~C~~CV~r~DHHC~Wl---~nCVG~ 187 (318)
+.|..||.-.|-||.|= +.|+-.
T Consensus 6 ~sC~~C~~a~DPyCgW~~~~~~C~~~ 31 (56)
T d1olza3 6 GTCEDCVLARDPYCAWSPPTATCVAL 31 (56)
T ss_dssp CSHHHHHHTTCTTEEEETTTTEEEET
T ss_pred ccHHHHHcCCCCcCcccCCCCCeecC
Confidence 35889999999999995 568754
No 14
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.90 E-value=8.9 Score=22.67 Aligned_cols=19 Identities=37% Similarity=0.859 Sum_probs=15.7
Q ss_pred eccccccccCCCCccCCCC
Q 021039 149 YCRICKIFRPPRSCHCAVC 167 (318)
Q Consensus 149 ~C~tC~~~kP~Rs~HCs~C 167 (318)
.|..|+..-||=..||..|
T Consensus 6 kC~~C~~~N~Pl~ryC~rC 24 (41)
T d2cr8a1 6 QCTECKKFNSPSKRYCFRC 24 (41)
T ss_dssp ECSSSCCEECSSCCBCTTT
T ss_pred ecCcccccCCcchhHHHHH
Confidence 5888888888888888776
No 15
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.40 E-value=5.9 Score=24.64 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=9.4
Q ss_pred CCCccCCCCCcc
Q 021039 159 PRSCHCAVCDNC 170 (318)
Q Consensus 159 ~Rs~HCs~C~~C 170 (318)
.|-|||+.||+-
T Consensus 14 ~rkhhCr~CG~~ 25 (51)
T d1y02a2 14 ARKQTCLDCKKN 25 (51)
T ss_dssp GGCEECTTTCCE
T ss_pred ccCcccccCCcc
Confidence 367999999883
No 16
>d1twfi1 g.41.3.1 (I:1-49) RBP9 subunit of RNA polymerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=31.29 E-value=7.7 Score=23.98 Aligned_cols=33 Identities=21% Similarity=0.569 Sum_probs=19.7
Q ss_pred eeecccccc---ccCCCC-----ccCCCCCcccccccccccc
Q 021039 147 LKYCRICKI---FRPPRS-----CHCAVCDNCVEKFDHHCPW 180 (318)
Q Consensus 147 ~~~C~tC~~---~kP~Rs-----~HCs~C~~CV~r~DHHC~W 180 (318)
.+||..|+. +|.+|. ..|+.|+.-..- |-+|.+
T Consensus 4 ~rFC~eCnNmLYPKEDk~~~~L~yaCR~C~y~e~A-~~~cVY 44 (49)
T d1twfi1 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA-GSPLVY 44 (49)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC-SCSEEE
T ss_pred eecChhcccccccCCccccCEEEEEccCCCceeEc-CCCeEE
Confidence 578888874 333333 458888875544 444443
No 17
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}
Probab=28.83 E-value=8 Score=21.05 Aligned_cols=17 Identities=35% Similarity=0.788 Sum_probs=12.7
Q ss_pred CCccCCCCCcccccccc
Q 021039 160 RSCHCAVCDNCVEKFDH 176 (318)
Q Consensus 160 Rs~HCs~C~~CV~r~DH 176 (318)
|.+.|..|++.-.+.+|
T Consensus 1 kp~~C~~C~k~F~~~~~ 17 (29)
T d2adra1 1 RSFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCCTTTCCCBSCHHH
T ss_pred CcCCCCCCCCCCCCchH
Confidence 56789999987766554
No 18
>d1tota1 g.44.1.6 (A:1-52) CREB-binding protein, CBP {Mouse (Mus musculus) [TaxId: 10090]}
Probab=28.32 E-value=8.6 Score=24.04 Aligned_cols=22 Identities=36% Similarity=0.886 Sum_probs=15.9
Q ss_pred eeeccccccccCCCCccCCCCCc
Q 021039 147 LKYCRICKIFRPPRSCHCAVCDN 169 (318)
Q Consensus 147 ~~~C~tC~~~kP~Rs~HCs~C~~ 169 (318)
...|..|+..-+.| +||..|..
T Consensus 6 ~~tCd~C~~~i~~R-y~C~~C~D 27 (52)
T d1tota1 6 VYTCNECKHHVETR-WHCTVCED 27 (52)
T ss_dssp CEEETTTTEEESSE-EEESSSSS
T ss_pred EEECcCCCCcCCCc-eECCCCCC
Confidence 45688888665555 89998853
No 19
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=24.53 E-value=12 Score=27.31 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=17.4
Q ss_pred eeeccccccc-cC--CCCccCCCCCccc
Q 021039 147 LKYCRICKIF-RP--PRSCHCAVCDNCV 171 (318)
Q Consensus 147 ~~~C~tC~~~-kP--~Rs~HCs~C~~CV 171 (318)
.+-|..|+.. .. .|-|||+.|++-|
T Consensus 48 ~~~C~~C~~~f~~~~~~~~~C~~C~~~~ 75 (124)
T d1zbdb_ 48 VNRCILCGEQLGMLGSASVVCEDCKKNV 75 (124)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEE
T ss_pred CCcCcccCCcccCCCCCCCcCccCCccc
Confidence 3568888754 32 4778899888744
No 20
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.85 E-value=15 Score=19.32 Aligned_cols=13 Identities=23% Similarity=0.718 Sum_probs=10.2
Q ss_pred ccCCCCCcccccc
Q 021039 162 CHCAVCDNCVEKF 174 (318)
Q Consensus 162 ~HCs~C~~CV~r~ 174 (318)
..|..|++|..|-
T Consensus 2 f~c~kcgkcyfrk 14 (28)
T d2dlqa2 2 FECPKCGKCYFRK 14 (28)
T ss_dssp CBCTTTCCBCSSH
T ss_pred CccccchhhhhhH
Confidence 4689999998764
No 21
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=20.65 E-value=12 Score=20.13 Aligned_cols=17 Identities=24% Similarity=0.694 Sum_probs=12.5
Q ss_pred CCccCCCCCcccccccc
Q 021039 160 RSCHCAVCDNCVEKFDH 176 (318)
Q Consensus 160 Rs~HCs~C~~CV~r~DH 176 (318)
|.+-|..|++.-.+-||
T Consensus 2 KPy~C~~C~k~F~~~~~ 18 (28)
T d1a1ia2 2 KPFQCRICMRNFSRSDH 18 (28)
T ss_dssp CCEECTTTCCEESCHHH
T ss_pred cCccCCCCcCEeccccc
Confidence 56789999987666554
No 22
>d1q5wa_ g.41.11.1 (A:) Npl4 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.35 E-value=24 Score=19.16 Aligned_cols=20 Identities=30% Similarity=1.001 Sum_probs=15.1
Q ss_pred eccccccccCCCCccCCCCC
Q 021039 149 YCRICKIFRPPRSCHCAVCD 168 (318)
Q Consensus 149 ~C~tC~~~kP~Rs~HCs~C~ 168 (318)
-|..|-..--|-+-||..|+
T Consensus 8 sC~HCTf~N~pgtd~CeMC~ 27 (31)
T d1q5wa_ 8 ACQHCTFMNQPGTGHCEMCS 27 (31)
T ss_dssp ECSSSCCEECTTCSBCTTTC
T ss_pred EeeeeeeecCCCCCcchhhc
Confidence 47777777777788887775
Done!