Query 021040
Match_columns 318
No_of_seqs 177 out of 1657
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 07:08:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021040.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021040hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2211 MelB Na+/melibiose sym 100.0 2E-33 4.4E-38 259.3 27.7 289 15-313 3-299 (467)
2 PRK11462 putative transporter; 100.0 6.7E-31 1.5E-35 249.0 31.5 281 19-312 4-289 (460)
3 PRK10429 melibiose:sodium symp 100.0 2.9E-30 6.3E-35 245.7 29.0 283 20-313 2-293 (473)
4 PRK09669 putative symporter Ya 100.0 4.9E-30 1.1E-34 242.3 28.0 284 17-312 2-290 (444)
5 PF13347 MFS_2: MFS/sugar tran 100.0 1.2E-30 2.6E-35 245.4 20.1 280 25-313 2-287 (428)
6 TIGR00792 gph sugar (Glycoside 100.0 2.2E-28 4.7E-33 230.1 26.9 277 26-313 1-284 (437)
7 PRK09848 glucuronide transport 100.0 1.7E-26 3.7E-31 218.4 28.9 285 18-313 2-291 (448)
8 TIGR01301 GPH_sucrose GPH fami 99.9 2.9E-21 6.3E-26 181.8 29.4 293 21-313 1-332 (477)
9 PRK03545 putative arabinose tr 99.9 3.4E-21 7.4E-26 178.9 29.2 262 22-313 7-268 (390)
10 TIGR00710 efflux_Bcr_CflA drug 99.9 2.6E-21 5.6E-26 178.6 27.8 253 36-313 17-269 (385)
11 TIGR00903 2A0129 major facilit 99.9 5.8E-21 1.3E-25 176.1 28.6 250 34-311 1-252 (368)
12 TIGR00900 2A0121 H+ Antiporter 99.9 1.4E-20 3.1E-25 171.9 30.5 263 31-313 6-274 (365)
13 COG2814 AraJ Arabinose efflux 99.9 1.4E-20 3.1E-25 171.0 28.1 269 16-312 5-273 (394)
14 PRK10213 nepI ribonucleoside t 99.9 2.2E-20 4.8E-25 173.9 30.2 261 22-312 18-278 (394)
15 PRK11663 regulatory protein Uh 99.9 7.8E-21 1.7E-25 179.1 26.3 257 32-313 31-306 (434)
16 TIGR00897 2A0118 polyol permea 99.9 3E-20 6.5E-25 173.4 28.3 272 19-313 7-284 (402)
17 PRK11652 emrD multidrug resist 99.9 5.9E-20 1.3E-24 170.7 28.7 254 33-313 17-270 (394)
18 PRK10133 L-fucose transporter; 99.9 1.6E-19 3.4E-24 170.3 31.7 295 7-313 9-322 (438)
19 PRK11902 ampG muropeptide tran 99.9 9.1E-20 2E-24 170.1 29.6 252 37-311 12-275 (402)
20 TIGR00886 2A0108 nitrite extru 99.9 3.9E-20 8.6E-25 169.7 26.6 266 31-311 8-290 (366)
21 PRK10406 alpha-ketoglutarate t 99.9 1.5E-19 3.3E-24 170.2 30.4 295 1-312 1-309 (432)
22 PRK11102 bicyclomycin/multidru 99.9 9.6E-20 2.1E-24 168.0 28.2 250 38-312 5-256 (377)
23 TIGR02332 HpaX 4-hydroxyphenyl 99.9 7.8E-20 1.7E-24 171.2 27.8 273 20-313 4-306 (412)
24 PLN00028 nitrate transmembrane 99.9 2.2E-19 4.8E-24 171.1 31.2 254 42-312 54-318 (476)
25 PRK15403 multidrug efflux syst 99.9 1.1E-19 2.4E-24 170.2 28.6 253 34-311 26-279 (413)
26 TIGR00899 2A0120 sugar efflux 99.9 1.1E-19 2.5E-24 167.1 27.6 253 33-312 6-261 (375)
27 TIGR00893 2A0114 d-galactonate 99.9 1E-19 2.2E-24 167.4 26.9 241 47-312 17-281 (399)
28 PRK15402 multidrug efflux syst 99.9 1E-19 2.2E-24 169.8 27.1 261 28-313 17-278 (406)
29 TIGR00901 2A0125 AmpG-related 99.9 1.5E-19 3.3E-24 165.6 27.7 254 43-312 7-275 (356)
30 PRK11646 multidrug resistance 99.9 3.1E-19 6.6E-24 166.5 29.9 252 31-312 17-269 (400)
31 PRK10473 multidrug efflux syst 99.9 3.4E-19 7.3E-24 165.5 29.4 252 36-313 15-266 (392)
32 PRK09556 uhpT sugar phosphate 99.9 1.7E-20 3.7E-25 178.4 21.0 252 45-313 50-321 (467)
33 PRK11273 glpT sn-glycerol-3-ph 99.9 9.6E-20 2.1E-24 172.6 25.6 247 46-313 50-316 (452)
34 PRK11010 ampG muropeptide tran 99.9 5.1E-19 1.1E-23 169.2 30.3 265 24-311 12-288 (491)
35 TIGR00891 2A0112 putative sial 99.9 3.5E-19 7.5E-24 165.2 27.9 268 22-313 10-301 (405)
36 PRK14995 methyl viologen resis 99.9 4E-19 8.7E-24 170.2 29.1 265 23-311 5-324 (495)
37 TIGR00890 2A0111 Oxalate/Forma 99.9 3.6E-19 7.9E-24 163.1 27.5 244 42-312 21-270 (377)
38 COG2271 UhpC Sugar phosphate p 99.9 2.7E-20 5.8E-25 167.7 19.2 247 46-315 50-317 (448)
39 PF07690 MFS_1: Major Facilita 99.9 6.9E-20 1.5E-24 166.6 21.6 255 33-312 5-269 (352)
40 PRK11195 lysophospholipid tran 99.9 1.7E-18 3.7E-23 161.2 30.0 255 28-312 7-267 (393)
41 PRK10091 MFS transport protein 99.8 7E-19 1.5E-23 163.0 26.5 258 26-313 5-262 (382)
42 PRK11551 putative 3-hydroxyphe 99.8 1.3E-18 2.8E-23 162.3 28.3 257 31-313 22-282 (406)
43 TIGR00881 2A0104 phosphoglycer 99.8 2.1E-19 4.5E-24 164.8 22.5 242 48-314 18-280 (379)
44 TIGR00712 glpT glycerol-3-phos 99.8 4.5E-19 9.9E-24 167.3 24.9 248 46-313 48-314 (438)
45 PF11700 ATG22: Vacuole efflux 99.8 2.7E-18 5.8E-23 162.6 29.9 282 22-316 2-347 (477)
46 TIGR00902 2A0127 phenyl propri 99.8 1.6E-18 3.5E-23 160.6 27.8 257 30-313 10-267 (382)
47 PRK09705 cynX putative cyanate 99.8 1.6E-18 3.5E-23 161.3 27.0 240 43-313 28-267 (393)
48 PRK10504 putative transporter; 99.8 2.5E-18 5.4E-23 163.6 28.0 265 23-313 9-324 (471)
49 PRK10054 putative transporter; 99.8 1.4E-18 3E-23 161.9 24.9 229 26-282 9-238 (395)
50 PRK10489 enterobactin exporter 99.8 1.4E-18 2.9E-23 162.9 24.4 259 32-312 25-285 (417)
51 TIGR00894 2A0114euk Na(+)-depe 99.8 3.3E-19 7.1E-24 169.4 20.4 239 53-313 70-324 (465)
52 TIGR00711 efflux_EmrB drug res 99.8 1.3E-18 2.8E-23 165.8 24.2 260 28-312 6-317 (485)
53 PRK11128 putative 3-phenylprop 99.8 4.8E-18 1E-22 157.5 26.8 250 34-313 14-267 (382)
54 TIGR00882 2A0105 oligosacchari 99.8 3.6E-18 7.8E-23 159.0 25.8 266 28-313 6-281 (396)
55 TIGR00885 fucP L-fucose:H+ sym 99.8 1.6E-17 3.5E-22 155.4 29.9 266 34-312 13-299 (410)
56 PRK09874 drug efflux system pr 99.8 1.2E-17 2.5E-22 155.6 29.0 266 21-313 10-285 (408)
57 PRK12307 putative sialic acid 99.8 8.9E-18 1.9E-22 157.6 27.8 263 23-313 17-293 (426)
58 PRK03699 putative transporter; 99.8 1.4E-17 2.9E-22 155.1 28.1 251 34-313 17-268 (394)
59 PRK11043 putative transporter; 99.8 4.1E-17 8.8E-22 152.0 30.0 244 38-311 20-267 (401)
60 TIGR00895 2A0115 benzoate tran 99.8 5.5E-18 1.2E-22 156.5 23.6 248 40-313 33-312 (398)
61 PRK03633 putative MFS family t 99.8 1.2E-17 2.6E-22 154.7 25.7 255 26-313 8-262 (381)
62 PRK09528 lacY galactoside perm 99.8 5.4E-18 1.2E-22 159.1 23.5 267 25-311 11-291 (420)
63 PRK15011 sugar efflux transpor 99.8 4.5E-17 9.9E-22 151.5 29.5 265 18-312 10-278 (393)
64 PRK15034 nitrate/nitrite trans 99.8 3.2E-17 7E-22 153.7 28.2 258 38-312 48-316 (462)
65 TIGR00896 CynX cyanate transpo 99.8 3.2E-17 6.9E-22 150.3 26.6 241 43-313 19-259 (355)
66 PRK10642 proline/glycine betai 99.8 7.5E-17 1.6E-21 154.4 28.0 273 27-312 19-316 (490)
67 KOG2532 Permease of the major 99.8 1.6E-17 3.5E-22 156.4 22.5 235 55-311 69-323 (466)
68 TIGR00883 2A0106 metabolite-pr 99.8 8.5E-17 1.8E-21 148.3 26.7 255 46-312 14-281 (394)
69 TIGR02718 sider_RhtX_FptX side 99.8 2.5E-16 5.3E-21 146.3 29.8 256 34-312 11-274 (390)
70 PRK05122 major facilitator sup 99.8 1.4E-16 3E-21 148.3 27.7 235 23-284 14-249 (399)
71 PRK15075 citrate-proton sympor 99.8 1.7E-16 3.6E-21 149.7 28.4 275 27-313 18-301 (434)
72 COG2223 NarK Nitrate/nitrite t 99.8 8.8E-17 1.9E-21 145.2 24.3 243 46-312 35-280 (417)
73 PRK09952 shikimate transporter 99.8 2.5E-16 5.5E-21 148.6 28.6 256 44-312 41-316 (438)
74 KOG1330 Sugar transporter/spin 99.8 2.4E-19 5.2E-24 163.1 7.0 271 20-315 29-316 (493)
75 cd06174 MFS The Major Facilita 99.8 2.2E-16 4.9E-21 142.9 26.5 233 31-313 6-238 (352)
76 PRK12382 putative transporter; 99.8 6.7E-16 1.4E-20 143.4 29.7 257 27-313 18-276 (392)
77 PRK08633 2-acyl-glycerophospho 99.8 1.5E-16 3.3E-21 166.7 27.3 275 27-314 12-297 (1146)
78 TIGR00805 oat sodium-independe 99.8 1.4E-17 3E-22 163.4 17.2 264 45-313 54-394 (633)
79 PRK03893 putative sialic acid 99.8 1.2E-15 2.5E-20 146.1 28.4 178 24-227 20-197 (496)
80 TIGR00892 2A0113 monocarboxyla 99.8 6.4E-16 1.4E-20 146.6 26.1 243 44-312 39-302 (455)
81 PRK06814 acylglycerophosphoeth 99.7 4.9E-16 1.1E-20 162.8 27.3 231 58-313 51-288 (1140)
82 PF05977 MFS_3: Transmembrane 99.7 1.5E-15 3.2E-20 145.5 26.9 264 31-315 17-283 (524)
83 COG2270 Permeases of the major 99.7 1.3E-16 2.7E-21 144.3 18.1 285 19-315 9-317 (438)
84 PRK10207 dipeptide/tripeptide 99.7 1.9E-15 4.1E-20 144.4 26.7 178 24-225 14-194 (489)
85 TIGR00879 SP MFS transporter, 99.7 6.8E-16 1.5E-20 145.8 21.5 153 56-228 68-220 (481)
86 PRK10077 xylE D-xylose transpo 99.7 4.8E-15 1E-19 141.2 26.3 166 55-228 51-218 (479)
87 KOG4830 Predicted sugar transp 99.7 1E-18 2.3E-23 147.2 0.2 241 14-307 7-258 (412)
88 TIGR00924 yjdL_sub1_fam amino 99.7 2.8E-14 6E-19 136.1 28.8 165 27-215 13-183 (475)
89 TIGR00887 2A0109 phosphate:H+ 99.7 1.7E-14 3.7E-19 138.6 27.3 164 55-228 52-228 (502)
90 TIGR00889 2A0110 nucleoside tr 99.7 1.2E-14 2.7E-19 136.3 25.7 248 33-313 11-278 (418)
91 PF03825 Nuc_H_symport: Nucleo 99.7 3.1E-14 6.8E-19 132.3 26.7 254 37-313 15-270 (400)
92 TIGR00898 2A0119 cation transp 99.7 8.2E-15 1.8E-19 140.7 22.6 233 51-313 116-386 (505)
93 PF01306 LacY_symp: LacY proto 99.7 1.4E-14 3.1E-19 133.1 22.3 269 23-313 6-286 (412)
94 TIGR01299 synapt_SV2 synaptic 99.7 7.5E-14 1.6E-18 138.3 27.6 170 43-228 186-358 (742)
95 COG0738 FucP Fucose permease [ 99.7 3.7E-13 8E-18 121.3 28.3 255 44-311 32-297 (422)
96 PF03209 PUCC: PUCC protein; 99.6 2.5E-13 5.4E-18 123.2 23.9 250 51-311 7-269 (403)
97 KOG2533 Permease of the major 99.6 4.4E-14 9.6E-19 133.7 19.3 236 54-308 76-335 (495)
98 KOG3764 Vesicular amine transp 99.6 3.9E-15 8.4E-20 133.3 10.7 229 55-312 102-332 (464)
99 PRK15462 dipeptide/tripeptide 99.6 1.6E-12 3.5E-17 123.3 28.6 158 31-211 16-176 (493)
100 TIGR00806 rfc RFC reduced fola 99.6 6.2E-12 1.3E-16 117.0 27.8 260 21-307 22-319 (511)
101 PRK09584 tppB putative tripept 99.6 3.6E-12 7.7E-17 122.4 27.4 162 30-214 27-191 (500)
102 KOG0569 Permease of the major 99.5 3.5E-12 7.6E-17 119.7 21.8 233 60-313 61-336 (485)
103 TIGR00788 fbt folate/biopterin 99.5 2.6E-12 5.6E-17 122.3 21.0 252 34-312 36-314 (468)
104 KOG0637 Sucrose transporter an 99.5 6.2E-13 1.3E-17 121.2 14.8 160 24-183 32-199 (498)
105 KOG2504 Monocarboxylate transp 99.5 9.7E-12 2.1E-16 118.8 21.1 241 48-314 70-361 (509)
106 COG2807 CynX Cyanate permease 99.5 1.1E-10 2.5E-15 103.9 25.7 240 45-316 33-273 (395)
107 PF06609 TRI12: Fungal trichot 99.4 6.7E-11 1.4E-15 113.9 26.0 240 47-314 67-377 (599)
108 PTZ00207 hypothetical protein; 99.4 3E-10 6.5E-15 109.8 25.4 162 45-228 48-209 (591)
109 TIGR00889 2A0110 nucleoside tr 99.4 7.7E-11 1.7E-15 110.7 20.1 183 31-228 215-406 (418)
110 KOG0254 Predicted transporter 99.3 1.7E-10 3.6E-15 111.3 21.8 145 59-228 89-233 (513)
111 PRK09705 cynX putative cyanate 99.3 2E-10 4.4E-15 106.9 21.1 180 27-230 208-387 (393)
112 PF05631 DUF791: Protein of un 99.3 5.3E-10 1.2E-14 100.2 22.0 261 19-309 33-301 (354)
113 PF03092 BT1: BT1 family; Int 99.3 1.9E-10 4.1E-15 108.4 19.3 247 45-311 10-280 (433)
114 KOG2325 Predicted transporter/ 99.3 2.1E-10 4.6E-15 107.2 17.1 257 19-287 29-299 (488)
115 KOG2615 Permease of the major 99.2 5.7E-10 1.2E-14 100.0 17.0 116 57-188 66-181 (451)
116 PRK09556 uhpT sugar phosphate 99.2 6.3E-10 1.4E-14 106.0 18.4 177 31-220 265-445 (467)
117 PRK10642 proline/glycine betai 99.2 2E-09 4.3E-14 103.2 21.9 171 37-229 263-434 (490)
118 TIGR00890 2A0111 Oxalate/Forma 99.2 5.1E-10 1.1E-14 102.4 15.3 151 42-215 223-373 (377)
119 PRK11551 putative 3-hydroxyphe 99.2 1.5E-09 3.2E-14 101.2 18.5 134 39-187 235-368 (406)
120 PRK15011 sugar efflux transpor 99.2 8.8E-09 1.9E-13 95.9 22.3 160 40-226 232-392 (393)
121 TIGR00897 2A0118 polyol permea 99.2 4.5E-09 9.7E-14 98.1 20.2 168 31-219 229-396 (402)
122 COG2814 AraJ Arabinose efflux 99.2 3.7E-09 8.1E-14 96.7 18.7 172 23-220 210-382 (394)
123 TIGR01272 gluP glucose/galacto 99.2 6E-09 1.3E-13 93.9 20.0 181 130-312 14-204 (310)
124 TIGR00899 2A0120 sugar efflux 99.2 7.4E-09 1.6E-13 95.2 20.9 160 40-226 215-375 (375)
125 KOG0255 Synaptic vesicle trans 99.1 5.6E-09 1.2E-13 100.8 20.3 146 54-228 113-258 (521)
126 PRK10504 putative transporter; 99.1 9.3E-09 2E-13 97.9 21.4 146 34-191 271-417 (471)
127 TIGR00880 2_A_01_02 Multidrug 99.1 7.5E-10 1.6E-14 86.5 11.4 136 66-226 5-140 (141)
128 PRK11273 glpT sn-glycerol-3-ph 99.1 5.9E-09 1.3E-13 98.9 19.4 171 29-221 258-432 (452)
129 COG3104 PTR2 Dipeptide/tripept 99.1 1.4E-08 3E-13 94.5 21.0 156 19-186 15-178 (498)
130 PRK03633 putative MFS family t 99.1 8.2E-09 1.8E-13 95.6 19.8 154 39-220 215-368 (381)
131 PRK11663 regulatory protein Uh 99.1 5.9E-09 1.3E-13 98.4 19.1 173 34-228 253-428 (434)
132 KOG2563 Permease of the major 99.1 1.1E-08 2.4E-13 93.7 19.9 270 27-313 48-328 (480)
133 PRK03699 putative transporter; 99.1 8.2E-09 1.8E-13 96.1 19.7 163 30-218 211-374 (394)
134 TIGR00879 SP MFS transporter, 99.1 1.6E-09 3.4E-14 102.3 15.0 167 44-228 304-474 (481)
135 PRK05122 major facilitator sup 99.1 9.8E-09 2.1E-13 95.5 20.0 158 38-222 230-387 (399)
136 PRK03545 putative arabinose tr 99.1 8E-09 1.7E-13 95.9 18.3 158 42-225 223-381 (390)
137 cd06174 MFS The Major Facilita 99.1 6.5E-09 1.4E-13 94.0 17.3 165 31-220 182-348 (352)
138 PRK09528 lacY galactoside perm 99.1 3.4E-09 7.3E-14 99.5 15.9 164 40-228 239-407 (420)
139 TIGR00893 2A0114 d-galactonate 99.1 3.6E-09 7.9E-14 97.1 15.8 173 26-220 217-395 (399)
140 TIGR00883 2A0106 metabolite-pr 99.1 4.1E-09 8.9E-14 97.0 16.1 144 34-188 229-374 (394)
141 PRK10489 enterobactin exporter 99.1 1.5E-08 3.2E-13 95.1 19.8 162 42-228 241-403 (417)
142 TIGR01299 synapt_SV2 synaptic 99.1 1.8E-08 4E-13 100.3 20.7 140 62-228 598-737 (742)
143 PRK09952 shikimate transporter 99.0 2.8E-08 6E-13 94.0 20.3 171 37-227 263-435 (438)
144 PRK09874 drug efflux system pr 99.0 1.4E-08 3.1E-13 94.5 18.1 165 37-226 232-400 (408)
145 PRK12382 putative transporter; 99.0 2.2E-08 4.8E-13 93.0 19.2 157 40-223 232-388 (392)
146 PRK10077 xylE D-xylose transpo 99.0 4.6E-09 1E-13 100.1 14.3 167 46-229 293-462 (479)
147 PF03137 OATP: Organic Anion T 99.0 2.9E-11 6.3E-16 116.4 -1.4 253 53-310 32-370 (539)
148 COG2271 UhpC Sugar phosphate p 99.0 8E-09 1.7E-13 94.1 13.8 169 28-220 256-430 (448)
149 KOG3626 Organic anion transpor 99.0 1.2E-08 2.6E-13 99.4 15.2 255 54-313 127-456 (735)
150 COG2223 NarK Nitrate/nitrite t 99.0 2.6E-08 5.6E-13 90.7 16.0 130 39-177 233-363 (417)
151 TIGR00792 gph sugar (Glycoside 99.0 3E-08 6.4E-13 93.3 17.3 144 34-191 232-382 (437)
152 PF00083 Sugar_tr: Sugar (and 99.0 5.6E-13 1.2E-17 126.1 -15.1 234 58-312 45-316 (451)
153 TIGR02718 sider_RhtX_FptX side 99.0 5.1E-08 1.1E-12 90.6 18.1 166 33-216 217-383 (390)
154 TIGR00902 2A0127 phenyl propri 99.0 1.2E-07 2.6E-12 87.9 20.6 148 26-189 207-355 (382)
155 PRK03893 putative sialic acid 99.0 2.4E-08 5.2E-13 95.6 16.3 132 43-187 294-426 (496)
156 PRK11010 ampG muropeptide tran 98.9 7.6E-07 1.6E-11 85.5 25.9 162 38-220 236-399 (491)
157 PRK10091 MFS transport protein 98.9 8.5E-08 1.8E-12 88.9 18.6 151 42-216 217-368 (382)
158 TIGR00892 2A0113 monocarboxyla 98.9 4.8E-09 1E-13 99.6 10.2 159 34-215 251-412 (455)
159 PRK15075 citrate-proton sympor 98.9 1.1E-07 2.4E-12 89.7 19.4 139 38-188 252-393 (434)
160 PRK15402 multidrug efflux syst 98.9 1.1E-07 2.5E-12 88.6 18.8 133 42-185 233-366 (406)
161 PRK12307 putative sialic acid 98.9 7.9E-08 1.7E-12 90.2 17.7 131 43-188 250-382 (426)
162 TIGR00896 CynX cyanate transpo 98.9 1.2E-07 2.7E-12 86.7 18.6 138 38-189 211-348 (355)
163 TIGR00891 2A0112 putative sial 98.9 5.5E-08 1.2E-12 90.1 16.3 134 42-189 256-390 (405)
164 TIGR00712 glpT glycerol-3-phos 98.9 1E-07 2.2E-12 90.1 17.3 168 38-227 265-436 (438)
165 PF03825 Nuc_H_symport: Nucleo 98.9 4.6E-07 1E-11 84.5 20.9 192 22-227 205-398 (400)
166 PRK10406 alpha-ketoglutarate t 98.9 3E-07 6.5E-12 86.7 20.0 126 37-173 256-382 (432)
167 TIGR00894 2A0114euk Na(+)-depe 98.9 1.4E-07 2.9E-12 89.8 17.7 178 27-223 264-449 (465)
168 PRK09848 glucuronide transport 98.9 2.5E-07 5.5E-12 87.6 19.3 143 37-191 241-390 (448)
169 TIGR00711 efflux_EmrB drug res 98.9 1.7E-07 3.7E-12 89.3 18.0 142 36-188 267-409 (485)
170 TIGR00900 2A0121 H+ Antiporter 98.9 1.6E-07 3.4E-12 85.6 16.9 130 45-188 232-362 (365)
171 PLN00028 nitrate transmembrane 98.8 1.3E-07 2.8E-12 90.4 16.7 153 42-220 270-429 (476)
172 KOG0252 Inorganic phosphate tr 98.8 3.1E-08 6.6E-13 91.0 11.3 164 56-228 81-249 (538)
173 KOG0569 Permease of the major 98.8 1.8E-07 3.8E-12 88.3 16.3 171 43-230 289-460 (485)
174 PRK14995 methyl viologen resis 98.8 2.1E-07 4.5E-12 89.4 17.1 137 40-188 275-412 (495)
175 PRK11128 putative 3-phenylprop 98.8 7.7E-07 1.7E-11 82.5 20.2 144 30-189 211-355 (382)
176 TIGR02332 HpaX 4-hydroxyphenyl 98.8 1E-07 2.2E-12 89.4 14.4 159 30-211 248-408 (412)
177 KOG3574 Acetyl-CoA transporter 98.8 1.1E-07 2.3E-12 85.4 13.5 256 46-311 52-325 (510)
178 KOG4686 Predicted sugar transp 98.8 2.4E-07 5.2E-12 80.3 15.0 129 43-187 283-412 (459)
179 PF11700 ATG22: Vacuole efflux 98.8 1.2E-06 2.5E-11 83.6 21.1 187 25-229 282-472 (477)
180 PF12832 MFS_1_like: MFS_1 lik 98.8 3.7E-08 8E-13 69.4 8.1 56 39-94 15-70 (77)
181 PF13347 MFS_2: MFS/sugar tran 98.8 3.9E-07 8.4E-12 85.9 17.2 149 31-192 232-387 (428)
182 PRK15034 nitrate/nitrite trans 98.8 2.9E-07 6.3E-12 86.9 16.1 60 43-104 271-330 (462)
183 PRK08633 2-acyl-glycerophospho 98.8 4.2E-07 9.1E-12 95.8 19.0 130 40-184 248-379 (1146)
184 TIGR00895 2A0115 benzoate tran 98.7 3.7E-07 8E-12 84.2 15.9 132 38-184 264-395 (398)
185 PRK10054 putative transporter; 98.7 1.1E-06 2.3E-11 82.0 16.7 175 29-228 211-388 (395)
186 KOG2816 Predicted transporter 98.7 6E-07 1.3E-11 84.8 15.0 197 67-291 70-282 (463)
187 TIGR00898 2A0119 cation transp 98.7 2.4E-06 5.1E-11 82.1 19.3 149 52-229 351-499 (505)
188 TIGR00882 2A0105 oligosacchari 98.7 1.3E-06 2.9E-11 81.2 17.0 167 31-222 222-393 (396)
189 TIGR00710 efflux_Bcr_CflA drug 98.7 2.2E-06 4.7E-11 79.0 17.9 122 42-174 224-346 (385)
190 PRK09669 putative symporter Ya 98.7 2E-06 4.3E-11 81.4 18.0 123 58-192 263-391 (444)
191 PRK11902 ampG muropeptide tran 98.6 6.2E-06 1.3E-10 77.0 21.0 154 45-219 230-385 (402)
192 TIGR00887 2A0109 phosphate:H+ 98.6 4.6E-07 9.9E-12 87.2 13.4 175 43-229 307-493 (502)
193 COG2807 CynX Cyanate permease 98.6 3E-06 6.4E-11 76.1 17.1 167 37-226 221-387 (395)
194 PRK10213 nepI ribonucleoside t 98.6 6.6E-06 1.4E-10 76.7 20.5 152 43-220 235-387 (394)
195 PRK11195 lysophospholipid tran 98.6 3.2E-06 6.9E-11 78.8 18.0 126 45-186 226-353 (393)
196 TIGR00903 2A0129 major facilit 98.6 3.7E-06 8E-11 77.7 18.0 164 27-220 195-361 (368)
197 TIGR00926 2A1704 Peptide:H+ sy 98.6 4.3E-05 9.3E-10 75.5 25.8 170 43-221 6-179 (654)
198 PRK06814 acylglycerophosphoeth 98.6 2.1E-06 4.6E-11 90.6 17.9 150 31-187 232-394 (1140)
199 PF05977 MFS_3: Transmembrane 98.6 9.1E-06 2E-10 78.3 20.3 132 43-189 237-369 (524)
200 TIGR00901 2A0125 AmpG-related 98.6 1.5E-06 3.3E-11 79.5 14.5 130 33-172 218-354 (356)
201 PF07690 MFS_1: Major Facilita 98.6 9.5E-07 2.1E-11 80.1 13.0 134 34-179 216-351 (352)
202 PRK11102 bicyclomycin/multidru 98.6 7.6E-06 1.7E-10 75.3 18.6 55 44-99 214-269 (377)
203 KOG0253 Synaptic vesicle trans 98.5 1.9E-05 4.1E-10 71.2 19.7 163 38-228 91-254 (528)
204 TIGR01272 gluP glucose/galacto 98.5 6.5E-06 1.4E-10 74.2 17.3 133 31-181 147-282 (310)
205 PRK11646 multidrug resistance 98.5 5E-06 1.1E-10 77.6 17.1 131 44-189 228-359 (400)
206 PRK10473 multidrug efflux syst 98.5 9.8E-06 2.1E-10 75.2 18.8 62 45-107 224-286 (392)
207 PRK10429 melibiose:sodium symp 98.5 8.5E-06 1.8E-10 77.8 18.7 150 34-192 241-396 (473)
208 TIGR00881 2A0104 phosphoglycer 98.5 5.8E-06 1.3E-10 75.5 16.2 145 32-188 224-371 (379)
209 KOG2532 Permease of the major 98.5 4.6E-06 1E-10 79.1 15.4 187 19-225 247-448 (466)
210 TIGR00886 2A0108 nitrite extru 98.4 1.2E-06 2.5E-11 80.3 9.3 125 39-175 240-365 (366)
211 PRK10133 L-fucose transporter; 98.4 2.6E-05 5.6E-10 73.8 18.0 117 35-168 269-387 (438)
212 PRK11043 putative transporter; 98.4 2.7E-05 6E-10 72.4 18.0 130 42-182 221-350 (401)
213 PRK11462 putative transporter; 98.3 0.00015 3.2E-09 69.2 22.1 141 38-191 242-389 (460)
214 COG2211 MelB Na+/melibiose sym 98.3 4.1E-05 8.9E-10 71.9 17.7 148 33-192 245-399 (467)
215 TIGR00769 AAA ADP/ATP carrier 98.3 0.0033 7.1E-08 59.8 30.0 265 46-312 24-329 (472)
216 PF06813 Nodulin-like: Nodulin 98.3 3.1E-05 6.7E-10 67.2 14.9 122 47-178 24-146 (250)
217 COG2270 Permeases of the major 98.2 6.9E-05 1.5E-09 68.8 15.8 129 45-188 273-402 (438)
218 PF06963 FPN1: Ferroportin1 (F 98.2 0.0053 1.2E-07 57.7 28.4 265 32-313 10-320 (432)
219 PF01770 Folate_carrier: Reduc 98.1 0.0031 6.8E-08 58.5 25.2 240 45-309 24-308 (412)
220 PF13000 Acatn: Acetyl-coenzym 98.1 0.00021 4.6E-09 67.0 17.5 256 47-312 23-339 (544)
221 KOG2504 Monocarboxylate transp 98.1 2.2E-05 4.9E-10 75.3 11.5 173 25-220 299-472 (509)
222 PRK11652 emrD multidrug resist 98.1 0.00024 5.3E-09 65.9 18.3 128 42-182 225-353 (394)
223 PF01306 LacY_symp: LacY proto 98.1 0.00048 1E-08 64.1 19.1 179 25-228 221-404 (412)
224 KOG4686 Predicted sugar transp 98.1 6.6E-06 1.4E-10 71.6 5.5 244 55-313 75-331 (459)
225 TIGR00788 fbt folate/biopterin 98.0 0.00018 3.9E-09 68.7 14.0 162 54-226 283-447 (468)
226 PRK10207 dipeptide/tripeptide 97.9 0.00058 1.3E-08 65.6 15.8 172 45-222 290-474 (489)
227 TIGR00924 yjdL_sub1_fam amino 97.8 0.00082 1.8E-08 64.3 16.0 143 35-183 283-437 (475)
228 KOG0254 Predicted transporter 97.8 0.0002 4.2E-09 69.3 11.1 167 45-230 316-489 (513)
229 KOG2533 Permease of the major 97.8 0.00012 2.7E-09 69.9 9.4 83 25-107 274-361 (495)
230 TIGR00885 fucP L-fucose:H+ sym 97.8 0.0016 3.5E-08 61.0 16.4 75 30-105 238-314 (410)
231 KOG0253 Synaptic vesicle trans 97.7 0.00014 3.1E-09 65.7 8.6 137 65-228 387-523 (528)
232 KOG3098 Uncharacterized conser 97.7 0.005 1.1E-07 58.1 18.4 234 65-316 56-309 (461)
233 PRK15403 multidrug efflux syst 97.7 0.0029 6.4E-08 59.3 17.1 50 42-91 236-286 (413)
234 KOG3762 Predicted transporter 97.7 6.8E-05 1.5E-09 70.7 5.3 66 42-107 29-94 (618)
235 PF03209 PUCC: PUCC protein; 97.6 0.019 4.2E-07 52.9 20.2 168 40-219 224-393 (403)
236 COG0477 ProP Permeases of the 97.6 0.041 8.9E-07 47.6 26.5 152 42-213 20-174 (338)
237 TIGR01301 GPH_sucrose GPH fami 97.5 0.012 2.5E-07 56.3 18.9 154 63-228 309-475 (477)
238 KOG3764 Vesicular amine transp 97.5 0.00052 1.1E-08 62.7 8.9 183 16-220 256-450 (464)
239 PRK09584 tppB putative tripept 97.4 0.011 2.4E-07 56.9 17.3 113 61-182 318-437 (500)
240 PF00083 Sugar_tr: Sugar (and 97.1 1.4E-06 3.1E-11 82.3 -12.9 163 47-230 276-442 (451)
241 COG0738 FucP Fucose permease [ 96.9 0.075 1.6E-06 49.0 16.5 138 27-182 239-377 (422)
242 KOG4332 Predicted sugar transp 96.7 0.0018 3.9E-08 56.3 4.0 42 53-94 66-107 (454)
243 KOG0252 Inorganic phosphate tr 96.7 0.0021 4.5E-08 59.9 4.4 181 33-229 313-502 (538)
244 PF03219 TLC: TLC ATP/ADP tran 96.5 0.86 1.9E-05 43.8 26.1 133 147-282 165-312 (491)
245 PF05978 UNC-93: Ion channel r 96.4 0.23 4.9E-06 40.0 14.3 102 65-182 43-144 (156)
246 KOG3762 Predicted transporter 96.4 0.028 6E-07 53.6 9.8 140 37-191 384-524 (618)
247 PF06779 DUF1228: Protein of u 96.2 0.062 1.4E-06 38.3 8.7 64 43-107 11-74 (85)
248 PF12832 MFS_1_like: MFS_1 lik 96.1 0.036 7.8E-07 38.8 7.0 60 255-315 5-64 (77)
249 TIGR00805 oat sodium-independe 95.9 0.038 8.1E-07 54.9 8.7 75 29-103 335-412 (633)
250 PRK15462 dipeptide/tripeptide 95.7 1.5 3.2E-05 42.3 18.4 111 61-180 310-431 (493)
251 PRK03612 spermidine synthase; 95.6 1.8 3.8E-05 42.1 18.7 39 47-85 37-76 (521)
252 KOG0255 Synaptic vesicle trans 95.4 1.5 3.3E-05 42.3 17.7 137 71-230 362-498 (521)
253 PF06963 FPN1: Ferroportin1 (F 95.3 0.7 1.5E-05 43.6 14.6 125 47-181 281-410 (432)
254 PF00854 PTR2: POT family; In 95.1 0.2 4.3E-06 46.2 10.2 116 90-220 2-119 (372)
255 PF06609 TRI12: Fungal trichot 94.4 2.1 4.5E-05 42.2 15.6 112 60-183 350-461 (599)
256 KOG1479 Nucleoside transporter 94.2 2.3 4.9E-05 39.6 14.5 78 8-85 2-82 (406)
257 KOG1237 H+/oligopeptide sympor 93.8 1.2 2.5E-05 43.8 12.6 159 21-181 33-212 (571)
258 KOG2563 Permease of the major 93.5 0.29 6.3E-06 45.9 7.4 49 55-103 297-345 (480)
259 KOG2816 Predicted transporter 92.6 1.3 2.8E-05 42.3 10.5 117 55-187 273-390 (463)
260 PF03092 BT1: BT1 family; Int 91.6 2.3 5E-05 40.2 11.1 160 56-227 252-415 (433)
261 COG3104 PTR2 Dipeptide/tripept 90.0 11 0.00023 36.1 13.6 194 23-225 280-488 (498)
262 PF07672 MFS_Mycoplasma: Mycop 89.8 1.2 2.7E-05 38.7 6.7 98 159-261 2-105 (267)
263 KOG2615 Permease of the major 88.1 7.7 0.00017 36.0 10.8 122 54-189 292-414 (451)
264 PTZ00207 hypothetical protein; 84.6 13 0.00028 36.7 11.3 160 47-222 376-550 (591)
265 KOG3098 Uncharacterized conser 80.2 56 0.0012 31.2 16.7 113 60-176 280-401 (461)
266 PF02487 CLN3: CLN3 protein; 75.0 74 0.0016 29.8 17.2 101 62-182 62-162 (402)
267 COG2119 Predicted membrane pro 72.6 53 0.0011 27.1 9.4 54 43-98 103-172 (190)
268 KOG3810 Micronutrient transpor 71.6 86 0.0019 29.0 13.1 46 142-188 110-155 (433)
269 CHL00190 psaM photosystem I su 70.9 9.4 0.0002 21.3 3.3 22 294-315 9-30 (30)
270 PF03219 TLC: TLC ATP/ADP tran 69.7 66 0.0014 31.1 11.1 45 134-178 290-334 (491)
271 TIGR00939 2a57 Equilibrative N 69.6 1E+02 0.0022 29.2 13.0 171 10-190 251-435 (437)
272 PF13000 Acatn: Acetyl-coenzym 68.5 1.2E+02 0.0026 29.5 13.3 47 130-177 409-455 (544)
273 TIGR00880 2_A_01_02 Multidrug 66.6 49 0.0011 24.3 9.1 33 60-92 88-120 (141)
274 TIGR00769 AAA ADP/ATP carrier 65.7 1.3E+02 0.0028 28.9 17.1 50 134-183 274-323 (472)
275 TIGR03053 PS_I_psaM photosyste 63.9 16 0.00034 20.2 3.3 22 294-315 8-29 (29)
276 COG3202 ATP/ADP translocase [E 60.8 1.6E+02 0.0036 28.4 28.4 216 47-269 45-301 (509)
277 PF07465 PsaM: Photosystem I p 60.4 22 0.00048 19.7 3.5 22 294-315 8-29 (29)
278 PRK11878 psaM photosystem I re 59.9 20 0.00044 20.6 3.4 22 294-315 12-33 (34)
279 KOG2601 Iron transporter [Inor 58.6 41 0.0009 31.3 6.9 80 14-93 17-97 (503)
280 PF04341 DUF485: Protein of un 58.1 67 0.0015 23.0 8.9 74 243-316 7-83 (91)
281 PF02487 CLN3: CLN3 protein; 58.0 1.7E+02 0.0036 27.6 14.7 49 137-186 346-394 (402)
282 KOG1330 Sugar transporter/spin 55.4 73 0.0016 30.5 8.2 39 49-87 272-311 (493)
283 KOG3626 Organic anion transpor 54.7 54 0.0012 33.3 7.7 59 28-86 396-456 (735)
284 PF09527 ATPase_gene1: Putativ 53.6 55 0.0012 20.8 5.3 25 69-93 10-35 (55)
285 PF09605 Trep_Strep: Hypotheti 52.2 92 0.002 25.7 7.7 24 294-317 160-183 (186)
286 KOG2325 Predicted transporter/ 51.1 14 0.0003 35.5 2.9 47 135-182 397-443 (488)
287 PF02990 EMP70: Endomembrane p 49.3 1E+02 0.0022 30.0 8.7 19 295-313 306-324 (521)
288 PF11947 DUF3464: Protein of u 45.7 61 0.0013 25.9 5.3 38 138-177 107-144 (153)
289 COG3202 ATP/ADP translocase [E 45.6 2.9E+02 0.0063 26.7 10.8 42 134-175 292-333 (509)
290 PRK11469 hypothetical protein; 45.1 1.8E+02 0.0039 24.1 8.8 79 19-105 101-180 (188)
291 PF01770 Folate_carrier: Reduc 42.9 2.9E+02 0.0064 26.0 11.7 37 55-91 281-317 (412)
292 PF03137 OATP: Organic Anion T 41.5 8.8 0.00019 37.5 0.0 59 29-87 310-370 (539)
293 PF13940 Ldr_toxin: Toxin Ldr, 41.3 69 0.0015 18.3 3.8 28 58-85 3-34 (35)
294 TIGR02230 ATPase_gene1 F0F1-AT 41.2 1.2E+02 0.0025 22.4 5.8 24 69-92 52-76 (100)
295 PRK11375 allantoin permease; P 40.6 85 0.0019 30.2 6.6 75 9-85 12-86 (484)
296 PF11872 DUF3392: Protein of u 39.2 1.3E+02 0.0028 22.4 5.8 45 34-85 59-105 (106)
297 KOG3097 Predicted membrane pro 38.6 2.8E+02 0.0061 25.6 8.9 42 55-97 306-347 (390)
298 TIGR00806 rfc RFC reduced fola 38.1 3.9E+02 0.0084 26.0 11.0 45 44-88 282-327 (511)
299 KOG3574 Acetyl-CoA transporter 37.8 2.2E+02 0.0048 26.9 8.3 129 47-182 288-424 (510)
300 KOG3810 Micronutrient transpor 35.8 3.5E+02 0.0075 25.3 9.1 72 58-138 270-342 (433)
301 TIGR02185 Trep_Strep conserved 33.6 2.7E+02 0.006 22.9 8.1 22 296-317 165-186 (189)
302 COG5336 Uncharacterized protei 32.7 1.5E+02 0.0033 22.1 5.2 31 63-93 46-76 (116)
303 PF05631 DUF791: Protein of un 32.0 4.1E+02 0.0089 24.5 9.7 76 31-107 126-212 (354)
304 TIGR00800 ncs1 NCS1 nucleoside 31.1 2.2E+02 0.0048 26.9 7.7 34 54-87 42-75 (442)
305 PF11368 DUF3169: Protein of u 30.6 3.5E+02 0.0076 23.3 15.8 23 294-316 140-162 (248)
306 COG5336 Uncharacterized protei 27.6 2.6E+02 0.0057 20.9 6.5 32 159-190 38-69 (116)
307 PF06796 NapE: Periplasmic nit 27.5 1.5E+02 0.0032 19.3 3.9 6 48-53 43-48 (56)
308 COG2233 UraA Xanthine/uracil p 27.3 1.8E+02 0.0039 27.7 6.2 72 17-92 9-82 (451)
309 PF05365 UCR_UQCRX_QCR9: Ubiqu 25.6 1.6E+02 0.0034 19.1 3.8 28 290-317 14-41 (55)
310 KOG3880 Predicted small molecu 25.4 5.3E+02 0.012 23.7 8.3 30 61-90 64-95 (409)
311 COG3162 Predicted membrane pro 25.3 2.8E+02 0.006 20.4 8.6 74 242-315 14-90 (102)
312 COG3135 BenE Uncharacterized p 21.9 6.5E+02 0.014 23.4 8.3 17 152-168 290-306 (402)
313 PF06808 DctM: DctM-like trans 21.3 6.9E+02 0.015 23.5 10.7 37 151-187 122-158 (416)
314 PF03616 Glt_symporter: Sodium 21.3 6.6E+02 0.014 23.2 9.4 19 296-314 250-268 (368)
315 PF01733 Nucleoside_tran: Nucl 21.0 38 0.00083 30.3 0.5 47 134-181 256-302 (309)
316 PF04226 Transgly_assoc: Trans 20.2 2.3E+02 0.005 17.5 4.4 18 202-219 24-41 (48)
No 1
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2e-33 Score=259.30 Aligned_cols=289 Identities=20% Similarity=0.253 Sum_probs=239.6
Q ss_pred CCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCc
Q 021040 15 DSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHF 89 (318)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr 89 (318)
|+.++|++.++++.|++|++++.+.....+.|++.|++++ |+++..+|.++.+..+.|++.+|+.|.++| |||||
T Consensus 3 ~~~~~kLs~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~Grf 82 (467)
T COG2211 3 NSSSKKLSLKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRF 82 (467)
T ss_pred CcccCcccHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccc
Confidence 4456899999999999999999999999999999999998 999999999999999999999999999999 69999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH
Q 021040 90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN 169 (318)
Q Consensus 90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 169 (318)
|||+++|.++.++...++|. .|. ++.+.+..+..++ ..+++++++..+.|+.++.+++++|++||.+..++|+
T Consensus 83 RP~lL~g~ip~~i~~~l~F~--~p~-~~~~~k~~ya~vt----Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~ 155 (467)
T COG2211 83 RPWLLWGAIPFAIVAVLLFI--TPD-FSMTGKLIYALVT----YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRM 155 (467)
T ss_pred cHHHHHHhHHHHHHHHHHHc--CCC-cccCcchHHHHHH----HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHH
Confidence 99999999999999888885 331 1112222333333 3568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cC--CCCchHHHHHHH
Q 021040 170 AFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LR--GNSHARISWAYW 246 (318)
Q Consensus 170 ~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~--~~~~~~~~~~~~ 246 (318)
.+.++|.++...+..|++..+++ +|...+|+....+.++++++..+.+++.+||+..+.+ .+ .+.+.++++..+
T Consensus 156 ~~~~~g~~l~~~~~~plv~~~g~---~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~~~~~~~~~~~~~~~~~~~~ 232 (467)
T COG2211 156 VFASLGGLLVAVLFPPLVKLFGG---GDKALGYQGTALVLGVIGVILLLFCFFNVKERVVETQPTKTGVKLKLKDSFLLI 232 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---CcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCccccCcccccccHHHHHHHH
Confidence 99999999988888899887663 2335788888889999999999999999999865332 12 345667778889
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+|||+++.+++.+++...+.+...+.+++|.++++|-+.............+.+++..+.+++.||+
T Consensus 233 ~~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~ 299 (467)
T COG2211 233 FKNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKF 299 (467)
T ss_pred HccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 9999999999999999999999999999999999987765544444444555555566666666664
No 2
>PRK11462 putative transporter; Provisional
Probab=100.00 E-value=6.7e-31 Score=248.98 Aligned_cols=281 Identities=15% Similarity=0.196 Sum_probs=216.5
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHH
Q 021040 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWH 93 (318)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l 93 (318)
+|+++++++.|++|+++....+.....|++.|+++. |+++..+|.++.+..++|++.+|+.|+++| ||||||||+
T Consensus 4 ~~l~~~~k~~Yg~g~~~~~~~~~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~i 83 (460)
T PRK11462 4 EVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWV 83 (460)
T ss_pred CcccHhHHHhhccchhhhhHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhH
Confidence 689999999999999999999999999999999997 999999999999999999999999999999 589999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHH
Q 021040 94 GAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (318)
Q Consensus 94 ~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 173 (318)
++|.++.++++.++|. .| ..+. ....+++.+..+++..+++..++|+.++.+|+++|++||+++.++|+.+.+
T Consensus 84 l~g~i~~~i~~~llf~--~p-~~s~----~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~ 156 (460)
T PRK11462 84 LFGALPFGIVCVLAYS--TP-DLSM----NGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLAT 156 (460)
T ss_pred hHHHHHHHHHHHHHHh--CC-CCCc----chHHHHHHHHHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 9999999999888885 34 1111 112333444445678999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHH
Q 021040 174 VANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYY 253 (318)
Q Consensus 174 ~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (318)
+|..+++.+..|++..++. .+...+|++...+.+++++++..+++...||+++++ +++.+.++.++.++|||+++
T Consensus 157 iG~~~~~~~~~plv~~~g~---~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~~--~~~~~~~~~l~~~~~Nk~~~ 231 (460)
T PRK11462 157 AGGMLSTVLMMPLVNLIGG---DNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAP--PTTTSMREDLRDIWQNDQWR 231 (460)
T ss_pred HHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCCC--ccCCCHHHHHHHHhCChHHH
Confidence 9998888887787765542 122357888778888888888777777788864332 23345778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.++...++.............+|.++..|.+.. ...+..+..++++++..+.++++||
T Consensus 232 ~l~~~~~~~~~~~~~~~~~~~y~~~y~~g~~~~-~~~~l~~~~i~~iig~~l~~~l~~r 289 (460)
T PRK11462 232 IVGLLTIFNILAVCVRGGAMMYYVTWILGTPEV-FVAFLTTYCVGNLIGSALAKPLTDW 289 (460)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhhhcCChHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777777766655555555555555554332 2222233345555555555665554
No 3
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.98 E-value=2.9e-30 Score=245.73 Aligned_cols=283 Identities=16% Similarity=0.205 Sum_probs=216.1
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHH
Q 021040 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHG 94 (318)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~ 94 (318)
|++.++++.|++|+++.++.+.+..+|++.|+++. |+++.++|.++.+..+++++.+|+.|+++| ||||||||++
T Consensus 2 ~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il 81 (473)
T PRK10429 2 SISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWIL 81 (473)
T ss_pred CCchhHHHhhccchhHHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHh
Confidence 78899999999999999999999999999999998 999999999999999999999999999999 6799999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (318)
Q Consensus 95 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 174 (318)
++.++.++++.++|. .| ... ....++.+.+..++++++++...+|+.++.+|+++|++||.++.+++..+.++
T Consensus 82 ~g~i~~~i~~~llf~--~p-~~~----~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~i 154 (473)
T PRK10429 82 IGTLANSVVLFLLFS--AH-LFE----GTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASL 154 (473)
T ss_pred hhhHHHHHHHHHHHc--CC-CCC----ccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHH
Confidence 999999999877774 23 111 11123333444456788999999999999999998899999999998888888
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cCCCCchHHHHHHHHhcH
Q 021040 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRGNSHARISWAYWFKKI 250 (318)
Q Consensus 175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~~~~~~~~~~~~~~~~~ 250 (318)
|+.+.+.+..+++..++. .+...+|++...+.+++..++.+++++.+||++.+++ ++++.+.++.++.++|||
T Consensus 155 g~~~~~~~~~~~~~~~g~---~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 231 (473)
T PRK10429 155 AGFVTAGFTLPFVNYVGG---GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSDNQVSAEGSHLTLKDIVALIYKND 231 (473)
T ss_pred HHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCccccccccccCCCHHHHHHHHhcCH
Confidence 877776666666654432 1223568888888888877777777788888643211 123445778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 251 LYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+++.++...++.+...+....+.+.|.++..+. ......+..+..++++++.++.++++||.
T Consensus 232 ~~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~-~~~~~~~~~~~~i~~ii~~~~~~~l~~r~ 293 (473)
T PRK10429 232 QLSCLLGMALAYNIASNIINGFAIYYFTYVIGD-ADLFPYYLSYAGAANLVTLILFPRLVKSL 293 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeEEEEECCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999888888888887777877777776553 33333333333345555555555555543
No 4
>PRK09669 putative symporter YagG; Provisional
Probab=99.98 E-value=4.9e-30 Score=242.31 Aligned_cols=284 Identities=19% Similarity=0.196 Sum_probs=215.7
Q ss_pred CCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchH
Q 021040 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKI 91 (318)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~ 91 (318)
|++|+++++++.|++|+++....+.....|+++|+++. |+|++++|.++.+..+++++.+|+.|+++|| ||||||
T Consensus 2 ~~~~l~~~~~~~yg~g~~~~~~~~~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp 81 (444)
T PRK09669 2 NTSQLTTKDKIGYGLGDTACNLVWQTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRP 81 (444)
T ss_pred CCCcccHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcch
Confidence 34789999999999999999988888899999999997 9999999999999999999999999999996 999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH
Q 021040 92 WHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF 171 (318)
Q Consensus 92 ~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 171 (318)
|++++.++.+++..++|. .|. .+.. ...+.+.+...+++.+++...+|+.++.+|+++|++||++..+++..+
T Consensus 82 ~il~~~~~~~i~~~l~f~--~p~-~~~~----~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~ 154 (444)
T PRK09669 82 YLLWFAIPFGVVCLLTFY--TPD-FGAT----GKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFAL 154 (444)
T ss_pred hHHHHHHHHHHHHHHHHh--CCC-CCcc----hHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHH
Confidence 999998888888776664 341 1111 122333333345677888899999999999998889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHH
Q 021040 172 TMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKIL 251 (318)
Q Consensus 172 ~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (318)
.++|..+++.+..|+...++. ++...+|+..+.+.++++.++.+++++..||+++++ ++++.+.++++++++|||+
T Consensus 155 ~~~G~~i~~~~~~pl~~~~~~---~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~n~~ 230 (444)
T PRK09669 155 SFIGGLIVSVIALPLVDILGK---GDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTPE-VDNSSSVWKDLKLLLGNSQ 230 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCCC-CcCCCCHHHHHHHHhCCch
Confidence 999998888877777765542 122457888888888888777777777788864332 2234456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 252 YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
++.++..+++............++|.++..+... ....+.....+.++++..+.+++.||
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~~~~~~~i~~ii~~~~~~~l~~r 290 (444)
T PRK09669 231 WRIMFIFNVVLLTAVVTRGGATLYYVNYVLLRPD-LATLFLVTGMIAGLFGALLSERLLGK 290 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhheeeeeecCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887777776666666666666554322 22223333445555666666666665
No 5
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.97 E-value=1.2e-30 Score=245.39 Aligned_cols=280 Identities=26% Similarity=0.393 Sum_probs=227.9
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL 99 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g~~~ 99 (318)
++.+|++|+++.++.+.....|+++|+++. |+++..+|++..+..+++++.+|+.|.++| ||||||||+++|.++
T Consensus 2 ~~~ay~~g~~~~~~~~~~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~ 81 (428)
T PF13347_consen 2 KKLAYGIGDLGYNMIWSLLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAIL 81 (428)
T ss_pred cEEEeeHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHH
Confidence 345699999999999999999999999998 999999999999999999999999999999 899999999999999
Q ss_pred HHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040 100 VAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (318)
Q Consensus 100 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (318)
.++++.++|. ..|...+... ..+...+..+++.++++..+.|+.++.+|+++|++||.+..++++.+..+|.++.
T Consensus 82 ~~~~~~llf~-~~p~~~~~~~----~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~ 156 (428)
T PF13347_consen 82 LALSFFLLFS-PPPAGLSFTA----KLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLA 156 (428)
T ss_pred HHHHHHHhhc-cccchhhhhh----HHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHH
Confidence 9999988884 1132222111 1222233345678999999999999999999999999999999999999999877
Q ss_pred HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc-ccccCCCCchHHHHHHHHhcHHHHHHHHH
Q 021040 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL-KMGLRGNSHARISWAYWFKKILYYQVALV 258 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (318)
+.+.++++..++. ++...+|++...+.++++.++.++..+.+||+++ .++++++.+.++.+++++|||+++.++..
T Consensus 157 ~~~~~~l~~~~g~---~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~~~~~~~~~~~~~~~~~~~~nr~~~~l~~~ 233 (428)
T PF13347_consen 157 SFLAPILVSWFGG---GDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVEVTEQEKKISLRDSLRSLFRNRPFRILLLA 233 (428)
T ss_pred HHHhhhhhhhhcc---CccchHHHHHHHHHHHHHHHHhhhhhheeeeccccccccccccccccchhhhcccchHHHHHHH
Confidence 7777777765542 1112389999999999999999999999999322 22334455678889999999999999999
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+++.++......+..++|.++..|.+. ....+..+..+.++++.++.++++||+
T Consensus 234 ~~~~~~~~~~~~~~~~y~~~~vl~~~~-~~~~~~~~~~~~~~v~~~~~~~l~~r~ 287 (428)
T PF13347_consen 234 FFLQWLAFALMNTFLPYYFTYVLGNEG-LISIFMLIFFVASIVGSPLWGRLSKRF 287 (428)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHhcCch-hhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999998888889999999888773 444555566778888888888888886
No 6
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.97 E-value=2.2e-28 Score=230.13 Aligned_cols=277 Identities=21% Similarity=0.303 Sum_probs=209.6
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHHHHHHHHHH
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVLV 100 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~l~~g~~~~ 100 (318)
++.|++|+++.+..+.+..+|+++|+++. |+++.++|+++++..+.+++.+|+.|+++|| +||||+++..+.++.
T Consensus 1 ~~~yg~g~~~~~~~~~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~ 80 (437)
T TIGR00792 1 KLSYGFGDFGNNFIFAIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPF 80 (437)
T ss_pred CeeeecchHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHH
Confidence 36799999999999999999999999986 9999999999999999999999999999996 899999999998888
Q ss_pred HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~ 180 (318)
+++..+++. .|. .. ....+..+.+...+.+++++...+|+.++.+|++++++||++..++++.+.++|.++++
T Consensus 81 ~i~~~~~~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~ 153 (437)
T TIGR00792 81 SIVLVLLFT--TPD-FS----ATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVA 153 (437)
T ss_pred HHHHHHHHh--CCC-CC----cchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777764 331 11 11112223333345778888888999999999988889999999999999999988888
Q ss_pred HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc--cCCCCchHHHHHHHHhcHHHHHHHHH
Q 021040 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG--LRGNSHARISWAYWFKKILYYQVALV 258 (318)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (318)
.+.+++...++. ++...+|++.+.+.+++++++.++.++.+||++++++ ++++.+.++.+++++|||+++.++..
T Consensus 154 ~~~~~l~~~~~~---~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 230 (437)
T TIGR00792 154 VIVLPLVSYFGG---GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEIPKNIEKKLSLKQIFKALFKNDQLLILCLA 230 (437)
T ss_pred HHHHHHHHHhCC---CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCCCcccccCCCHHHHHHHHhCCHHHHHHHHH
Confidence 777777765431 1124579999988888888888777788888753311 12234567788999999999999888
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 259 YMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 259 ~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.++.+.+......+.+.|.++..+ +....+.+..+..++++++.++.+++.||.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~ 284 (437)
T TIGR00792 231 YLFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKF 284 (437)
T ss_pred HHHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888877776777777777666 333333333344555555555555555554
No 7
>PRK09848 glucuronide transporter; Provisional
Probab=99.96 E-value=1.7e-26 Score=218.39 Aligned_cols=285 Identities=17% Similarity=0.215 Sum_probs=202.7
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHH
Q 021040 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIW 92 (318)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~ 92 (318)
.+|+++++++.|+++++++.+...+..+|+++|+++. |+++.++|.++.+..+++++.+|+.|+++|| +||||+|
T Consensus 2 ~~~~~~~~~~~yg~g~~~~~~~~~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~ 81 (448)
T PRK09848 2 NQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPF 81 (448)
T ss_pred CCcccHHHHHhhccchHHhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHH
Confidence 3689999999999999999999999999999999997 9999999999999999999999999999997 5999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040 93 HGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (318)
Q Consensus 93 l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 172 (318)
+.++.++..+...+++. .|........ .....+...+.+++++...+|+.++..+++.|++||.+..++|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~ 155 (448)
T PRK09848 82 LLFGTAPLMIFSVLVFW--VPTDWSHSSK----VVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAA 155 (448)
T ss_pred HHHHHHHHHHHHHHHHh--CcCCCCcchH----HHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHH
Confidence 88888777766665553 3322211111 12222223456788899999999999999988899999999998877
Q ss_pred HHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHH
Q 021040 173 MVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILY 252 (318)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (318)
+++........+|++....+ ++....|.....+.+++++++.++.....||+.+++ +++.+.++.+++++|||++
T Consensus 156 ~~~~~~~~~~~~p~i~~~~g---~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~~--~~~~~~~~~~~~l~~n~~f 230 (448)
T PRK09848 156 SLTFVCLAFLIGPSIKNSSP---EEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRI--VAQPSLKISLQTLKRNRPL 230 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCC---CchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCCC--ccCCCHHHHHHHHhCCchH
Confidence 77655444444565543321 111123322224445555555556666677764332 2234567778999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+...+..++............|.|+++.+|.++...........++.+++..+.+|+.+|.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~ 291 (448)
T PRK09848 231 FMLCIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARI 291 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998888888888887778889999998887654322222222344555555555555553
No 8
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.90 E-value=2.9e-21 Score=181.83 Aligned_cols=293 Identities=15% Similarity=0.054 Sum_probs=201.1
Q ss_pred CCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHH
Q 021040 21 VGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAG 96 (318)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g 96 (318)
+|+|+.+..+...++.|+.+.+..+++++|++++|+++.+.+++..+..+.+.+.+|+.|+++| |+||||+++..+
T Consensus 1 ~~~~~li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g 80 (477)
T TIGR01301 1 VPLRKLLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAG 80 (477)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHH
Confidence 3688999999999999999999999999999888999999999999999999999999999999 599999998777
Q ss_pred HHHHHHHHHHHhC-CCCCCcccC---ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccch-hHHHHHHHHH
Q 021040 97 SVLVAVSFSSVFG-GCMPCRILS---TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR-VVLTSCRNAF 171 (318)
Q Consensus 97 ~~~~~i~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R-~~~~~~~~~~ 171 (318)
.+..++++.++.+ +.+...+.. ..+.......+.+...+.+++.+..+.|+.++++|++++++|| +.+.++.+.+
T Consensus 81 ~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~ 160 (477)
T TIGR01301 81 AALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFF 160 (477)
T ss_pred HHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH
Confidence 7777777665532 100000000 0011111122222223466788888999999999999865554 5788999999
Q ss_pred HHHHHHHHHHHHHHH--HHhhccC---cccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---------CCCC
Q 021040 172 TMVANLSLYAIAFIV--FSVSTAK---THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---------RGNS 237 (318)
Q Consensus 172 ~~~g~~~~~~~~~~l--~~~~~~~---~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---------~~~~ 237 (318)
.++|+++++.+++.. ...++.. ..+....++++.|++.+++.+++.++.++.+||++..+++ .++.
T Consensus 161 ~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~~~~~~~~~~~~~~~~ 240 (477)
T TIGR01301 161 MAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIGSDDFINSEAAPPSKH 240 (477)
T ss_pred HHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCccccchhhhccccccc
Confidence 999999998877643 1111100 0011124789999988888888888888999997531110 0111
Q ss_pred ----chHHHHHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhh-ccccccc---------hhhHHHH-HHHHHHHH
Q 021040 238 ----HARISWAYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVIN-DLRMGQS---------AKALVPA-IIYICSFI 301 (318)
Q Consensus 238 ----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~-~~g~~~~---------~~~~~~~-~~~v~~~i 301 (318)
.+++-++.+.+- |+++.++.++++.+++...+..|...|+-+ .++-++. ..+.... +..+.+.+
T Consensus 241 ~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i 320 (477)
T TIGR01301 241 GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGI 320 (477)
T ss_pred chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 122333343333 559999999999999999999999888774 4443321 1233332 33355566
Q ss_pred HHHHHHHHHHhh
Q 021040 302 VSILLQVISLKL 313 (318)
Q Consensus 302 ~~~~~~~i~~~~ 313 (318)
.+++.+++.||+
T Consensus 321 ~s~~l~~l~~~~ 332 (477)
T TIGR01301 321 TSIGMEKLCRGW 332 (477)
T ss_pred HHHHHHHHHHHh
Confidence 677777776654
No 9
>PRK03545 putative arabinose transporter; Provisional
Probab=99.90 E-value=3.4e-21 Score=178.90 Aligned_cols=262 Identities=10% Similarity=-0.035 Sum_probs=180.8
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
+|...+...++.+..........+.+|.+.++.|+|+.++|++.+.+.+...+.+++.|.++||+||||. +..+.++.+
T Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~ 85 (390)
T PRK03545 7 AWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKL-LIGLFVLFI 85 (390)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH-HHHHHHHHH
Confidence 3444555566655443333334445666666679999999999999999999999999999999999998 566777777
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++..... +.+ +.+...+. +++.+++.+...+...+++.|..+ ++||+++.++.+.+.++|..+++.
T Consensus 86 ~~~~~~~-------~~~--~~~~l~~~----r~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~g~~~~~~~~g~~ig~~ 151 (390)
T PRK03545 86 ASHVLSA-------LAW--NFTVLLIS----RIGIAFAHAIFWSITASLAIRVAP-AGKKAQALSLLATGTALAMVLGLP 151 (390)
T ss_pred HHHHHHH-------Hhc--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-hhhhhhHHHHHHHHHHHHHHHHhh
Confidence 6654332 111 23322222 234566666666666778888875 578999999998888888877766
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (318)
+++.+.+ ..+||+.+++.++++++..+......||+++++ ++..++.++.+|||+++......++
T Consensus 152 l~~~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (390)
T PRK03545 152 LGRVIGQ----------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSEH-----SGSLKSLPLLFRRPALVSLYLLTVV 216 (390)
T ss_pred HHHHHHH----------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-----cchHHHHHHHHhCcHHHHHHHHHHH
Confidence 5544432 257999998888777776666555566643221 1223456788999998877666666
Q ss_pred HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.........++.+.|++++.|.+....+.+.....++++++.++.+|++||.
T Consensus 217 ~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 268 (390)
T PRK03545 217 VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRH 268 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6666666678889999988888876665555555566777777777777764
No 10
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.90 E-value=2.6e-21 Score=178.58 Aligned_cols=253 Identities=13% Similarity=0.029 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 36 ~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
.........+.+|.+.++.|.|+.++|++.++..+...+++++.|+++||+||||. +..+.++.+++......
T Consensus 17 ~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~------ 89 (385)
T TIGR00710 17 GPLGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPV-LLLGLFIFALSSLGLAL------ 89 (385)
T ss_pred HHHHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH------
Confidence 33444555566666666779999999999999999999999999999999999988 56677776666554421
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (318)
.+ +.+... +.+++.+++.+...++..+++.|..+ +++|++..+..+....+|..+++.+++.+..
T Consensus 90 -~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~------- 154 (385)
T TIGR00710 90 -SN--NIETLL----VLRFVQAFGASAGSVISQALVRDIYP-GEELSRIYSILMPVLALAPAVAPLLGGYILV------- 154 (385)
T ss_pred -Hc--cHHHHH----HHHHHHHcchhHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 11 122222 22345677777777778888899876 5789999999988888888877766654442
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (318)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (318)
..+|++.+++.+++.++..+...+..||++++++++++++..+.+++++|||+++...+...+..........+.|.
T Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (385)
T TIGR00710 155 ---WLSWHAIFAFLSLAGILLSALIFFILPETLPYEARIQISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFSGAPF 231 (385)
T ss_pred ---HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccCCHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHcChH
Confidence 24688888877777666666666667776543322222334566788899999988887777777777777888899
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++++++|.++...+.+.....++++++..+.+++.||.
T Consensus 232 ~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~ 269 (385)
T TIGR00710 232 VYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKW 269 (385)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988999887666555555556666666666666554
No 11
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=99.90 E-value=5.8e-21 Score=176.05 Aligned_cols=250 Identities=9% Similarity=-0.017 Sum_probs=172.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~ 113 (318)
+.++..+....+.+|...+|.|+|+.+.|++.+.+.+..++++++.|.++||+|||+. +..+......+.....
T Consensus 1 ~~~~~~~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~----- 74 (368)
T TIGR00903 1 FASQAIWVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWF-LFGSLATFAAAAGRLL----- 74 (368)
T ss_pred ChhhHHHHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHH-----
Confidence 3567788878888888888889999999999999999999999999999999998876 4433333323221111
Q ss_pred CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (318)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (318)
.. .+..... +.+++.+++.+.. .+.....+|..+ ++||+++.++.+.+..+|.++++.++..+..
T Consensus 75 ---~~-~~~~~l~----~~R~l~G~g~~~~-~~~~~~~~~~~~-~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~----- 139 (368)
T TIGR00903 75 ---DP-FNYEWLL----ACQLLAALGQPFL-LNAFAPAASQIR-EERRDLVISLLSFAMYLGIIFALAAGLKIYT----- 139 (368)
T ss_pred ---Hh-ccHHHHH----HHHHHHHhHhHHH-HHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 10 1222222 2234566666543 333444567776 5899999999999999999888777655543
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC-CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (318)
..+||+.+++.++++++..++..+.+||+++.++++.+ ++..+++++++|||.++.+...+++.....+...+|
T Consensus 140 -----~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~w 214 (368)
T TIGR00903 140 -----AGGLQLLIIPIAAVAAAGIILVLAALPALPFQAAEGFGFKDAVKEFGALAGRKDLWIIGAILGFGVALFDNLAIW 214 (368)
T ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcchHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 25799999888888888877777888987543221111 112346789999999999999999999999999999
Q ss_pred hHHhhhhccccccchhhHHHHHHH-HHHHHHHHHHHHHHH
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIY-ICSFIVSILLQVISL 311 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~-v~~~i~~~~~~~i~~ 311 (318)
+|.|+++ .|++.. .+....+.. .+.+..+++.||..|
T Consensus 215 lp~~L~~-~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r 252 (368)
T TIGR00903 215 LEAALRP-AGLEDI-AGDAVALAILAGLIGVAVIPDRVAR 252 (368)
T ss_pred HHHHHHH-CCCChH-HHHHHHHHHHHHHHHHHHhhHHhhh
Confidence 9999976 567653 233222222 233444566666643
No 12
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.90 E-value=1.4e-20 Score=171.88 Aligned_cols=263 Identities=16% Similarity=0.114 Sum_probs=180.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
.+.+...+...+....+|.|..+.+.++.++|++.++..+...+.+|+.|.++||+||||.+ ..+.++..++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~-~~~~~~~~~~~~~~~~- 83 (365)
T TIGR00900 6 AAQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVM-IGADLIRAVLVAVLPF- 83 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHH-HHHHHHHHHHHHHHHH-
Confidence 34455666667777788888888899999999999999999999999999999999999985 5565555554433221
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
.+ ..+..+.+... +...+.+++.+...++..++++|..+ ++||++..++.+....+|.++++.+++.+..
T Consensus 84 -~~--~~~~~~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~-- 153 (365)
T TIGR00900 84 -VA--LLGGLNIWQVY----VLAGILAIAQAFFTPAYQAMLPDLVP-EEQLTQANSLSQAVRSLFYIVGPGIGGLMYA-- 153 (365)
T ss_pred -HH--HcCCCcHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 00 00111222222 22345677778778888899999986 5799999999999999999888777665553
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccCCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKMGLRGN----SHARISWAYWFKKILYYQVALVYMLTRLV 265 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~e~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (318)
..+|++.+++.++..++..+.... ..||++++++++.+ ++.++.+++++|||.++......++....
T Consensus 154 --------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (365)
T TIGR00900 154 --------TLGIKWAIWVDAVGFAISALLIVSVRIPELAASEIQALSNAVLRDTREGIKFVLKNPLLRTLLLLALLFNLV 225 (365)
T ss_pred --------HhhHHHHHHHHHHHHHHHHHHHHhcccccCCCccccccchhHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 257888887766555444333322 22333221111111 12345577888999998888777777776
Q ss_pred HHHHH-HHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 266 VNVSQ-AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 266 ~~~~~-~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
..... .+.|.|.++.+|.+..+.+.+.....++++++.++.+++.||.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 274 (365)
T TIGR00900 226 FAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYF 274 (365)
T ss_pred HHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66555 7889999888888887666666666666677777777776664
No 13
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.4e-20 Score=170.98 Aligned_cols=269 Identities=11% Similarity=-0.022 Sum_probs=211.3
Q ss_pred CCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHH
Q 021040 16 SFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGA 95 (318)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~ 95 (318)
+.+++..+.+.+...++.|.......+..+.+|+.-+|+|+|..++|...+++.+..+++.|+...+.||+.|||. ++.
T Consensus 5 ~~~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~l-Ll~ 83 (394)
T COG2814 5 ATARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRL-LLG 83 (394)
T ss_pred ccccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH-HHH
Confidence 3447777888999999999988888888899999999999999999999999999999999999999999999998 566
Q ss_pred HHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040 96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (318)
Q Consensus 96 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g 175 (318)
...+++++-.... ++++ ...+.+.+ ++.++..+.......+..+++.| +++|+++.+....+..++
T Consensus 84 ~l~lFi~~n~l~a-------lAp~--f~~Ll~aR----~~~g~a~G~f~~i~~~~a~~lvp-p~~~~~Aiaiv~~G~tlA 149 (394)
T COG2814 84 LLALFIVSNLLSA-------LAPS--FAVLLLAR----ALAGLAHGVFWSIAAALAARLVP-PGKRGRALALVFTGLTLA 149 (394)
T ss_pred HHHHHHHHHHHHH-------Hhcc--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-ccchhhHHHHHHHHHHHH
Confidence 7777777755443 2222 33334444 44556666655556677788886 578999999888877777
Q ss_pred HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHH
Q 021040 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQV 255 (318)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
.++| .|+-.++++ ..+||+.|+..+.+++++.+..+..+| +++.+ ++++....+..+++|+|..+..
T Consensus 150 ~v~G----vPLGt~ig~------~~GWR~~F~~ia~l~ll~~~~~~~~lP-~~~~~--~~~~~~~~~~~~~l~~p~v~~~ 216 (394)
T COG2814 150 TVLG----VPLGTFLGQ------LFGWRATFLAIAVLALLALLLLWKLLP-PSEIS--GSLPGPLRTLLRLLRRPGVLLG 216 (394)
T ss_pred HHHh----ccHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHhCC-CccCC--CCCCcchhHHHHHhcCchHHHH
Confidence 6654 455555442 478999999999999988888888888 21111 1222333445678999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
....++...+++...+|+..+++|..|++.+.+..+-.+.-+++++++.+.+|+.||
T Consensus 217 l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr 273 (394)
T COG2814 217 LLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR 273 (394)
T ss_pred HHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999999999999999999999999999999888877777778888888888888887
No 14
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.89 E-value=2.2e-20 Score=173.86 Aligned_cols=261 Identities=13% Similarity=0.014 Sum_probs=179.3
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
.|+..+...++.+..........+.+|++.++.|.+++++|+..++..+...+++|+.|.++||+||||. +..+.++.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~-~~~~~~~~~ 96 (394)
T PRK10213 18 NWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYV-VILFAVLLT 96 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHH
Confidence 4444455555544444443344556777777789999999999999999999999999999999999998 566777777
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++..... +.+ +.+..+ +.+.+.+++.+...+...++++|..+ +++|+++.+....+.++|..+++.
T Consensus 97 ~~~~~~~-------~~~--~~~~l~----~~r~l~G~~~g~~~~~~~~~i~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~ 162 (394)
T PRK10213 97 LSCLLVS-------FAN--SFSLLL----IGRACLGLALGGFWAMSASLTMRLVP-PRTVPKALSVIFGAVSIALVIAAP 162 (394)
T ss_pred HHHHHHH-------HHC--hHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHcC-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654332 111 223222 23345677777777777888888875 578999999988888888887776
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (318)
+++.+.. ..+|++.+++.+++++++.+......||+++++ ++..+..++.+|+|+++......++
T Consensus 163 l~~~l~~----------~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~ 227 (394)
T PRK10213 163 LGSFLGE----------LIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP-----SHQKQNTFRLLQRPGVMAGMIAIFM 227 (394)
T ss_pred HHHHHHh----------hcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc-----ccchhHHHHHhcCHHHHHHHHHHHH
Confidence 6654442 247999988877766665555444566643221 1122345678899999887766666
Q ss_pred HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.........++++.++.++.|.+....+..-....+++++++++.+++.||
T Consensus 228 ~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r 278 (394)
T PRK10213 228 SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR 278 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666666777444456678887666665555556777888888888777
No 15
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.89 E-value=7.8e-21 Score=179.12 Aligned_cols=257 Identities=14% Similarity=0.053 Sum_probs=173.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
+.+...+.......+++.+.++.|+|..+.|++.+...+...+++++.|+++||+|||+. +.++.++.+++.....
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-~~~~~~~~~~~~~~~~--- 106 (434)
T PRK11663 31 GYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYF-MGIGLIATGIINILFG--- 106 (434)
T ss_pred HHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchh-HHHHHHHHHHHHHHHH---
Confidence 333333333345566777777789999999999999999999999999999999999987 5677777777655332
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
+.+ +.+...+. .++.+++.+...++..+++.+..+ +++|+++.++.+.+..+|..+++.+.+.+..
T Consensus 107 ----~~~--~~~~l~~~----~~l~g~~~g~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~--- 172 (434)
T PRK11663 107 ----FSS--SLWAFALL----WVLNAFFQGWGWPVCAKLLTAWYS-RTERGGWWAIWNTAHNVGGALIPLVVGAIAL--- 172 (434)
T ss_pred ----HHh--HHHHHHHH----HHHHHHHHHccchHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 111 12222222 233455555555556677788775 5789999999998888888877665554432
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c----c-------CCC----CchHHHHH-HHHhcHHH
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G----L-------RGN----SHARISWA-YWFKKILY 252 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~----~-------~~~----~~~~~~~~-~~~~~~~~ 252 (318)
..+||+.+++.++++++..+...+..||++++. + + +++ .+.++.++ ..+|+|.+
T Consensus 173 -------~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (434)
T PRK11663 173 -------HYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHDALELAQQQEGAGLSRKEILTKYVLLNPYI 245 (434)
T ss_pred -------cccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccccccccchhccccCCChhhhHHHHHhcChHH
Confidence 247999988877776665555555666654211 0 0 000 01112222 36678888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+......++.........+|+|.|+++.+|++....+....+..+++.++.++.++++||+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~ 306 (434)
T PRK11663 246 WLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKL 306 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 8888777777777777888999999988999876555555555566666677777776665
No 16
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.88 E-value=3e-20 Score=173.38 Aligned_cols=272 Identities=14% Similarity=0.113 Sum_probs=168.8
Q ss_pred CCCCchhhhhhc-ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHH
Q 021040 19 QPVGRWSVLYYG-SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (318)
Q Consensus 19 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~ 97 (318)
+|..+++.+... ++.+.........++++++++++.|.|+++.|++.+.+.+...+++|+.|+++||+||||. +..+.
T Consensus 7 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~-l~~~~ 85 (402)
T TIGR00897 7 QKIGIPLNLLWGYIGVVVFMTGDGLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKT-MMIGL 85 (402)
T ss_pred HHcCCCchhhHHHHHHHHHHHhhhhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-HHHHH
Confidence 677777765444 4556666776777889999998889999999999999999999999999999999999998 45677
Q ss_pred HHHHHHHHHH-hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040 98 VLVAVSFSSV-FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (318)
Q Consensus 98 ~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (318)
.+.+++.... .. +... .+.+...+ .+.+.+++.+.......+.+.+..+ +++|+++.+..+.+.++|.
T Consensus 86 ~~~~~~~~~~~~~-----~~~~-~~~~~l~~----~~~i~G~g~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~ 154 (402)
T TIGR00897 86 LLWCVGHAAFIVF-----GLGH-ANYPLILL----FYGIRGLGYPLFAYSFLVWVVYNTK-QDNLSSAVGWFWAVYSIGI 154 (402)
T ss_pred HHHHHHHHHHHHH-----hccC-ccHHHHHH----HHHHHHcchHHHHhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHH
Confidence 7666664322 10 0111 11221122 2234556655554445556666654 5789999999888887775
Q ss_pred -HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CCCCchHHHHHHHHhcHHH
Q 021040 177 -LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RGNSHARISWAYWFKKILY 252 (318)
Q Consensus 177 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---~~~~~~~~~~~~~~~~~~~ 252 (318)
+.++.+++.+...++ .....|++.+. ..+..++..+..+|+++++++ ++..+.++.+++++|||.+
T Consensus 155 ~~~g~~~~~~l~~~~g-----~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (402)
T TIGR00897 155 GVFGSYYSSYAIPAFG-----EMNTLWSALAF-----VLTGGVIALFSNKDIFTPQHMQTREKFSELGKAATILFTNPNV 224 (402)
T ss_pred HHHHHHHHHhcccccc-----hHHHHHHHHHH-----HHHHHHHHHhccCCCCCcccccCCcchhhHHHHHHHHHcChhH
Confidence 344444333322111 00112332221 112223333344443222111 1112234457788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 253 YQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+...+..++.........+|.|.|+++ +|++..+.+.+.....+++.++.+..++++||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 284 (402)
T TIGR00897 225 LLGGMVRIINTIGLFGFAVFLPMFVAE-LGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKL 284 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988888888777788888999999865 788876554444444455555555555555554
No 17
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.88 E-value=5.9e-20 Score=170.71 Aligned_cols=254 Identities=14% Similarity=0.080 Sum_probs=172.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
............+.+|.+.++.|.|+.+.+++.++..+...+++++.|.++||+||||. +..+.+..+++......
T Consensus 17 ~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~-~~~~~~~~~~~~~~~~~--- 92 (394)
T PRK11652 17 VAVGQMAQTIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPV-ILVGMSIFILGTLVALF--- 92 (394)
T ss_pred HHHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHH-HHHHHHHHHHHHHHHHH---
Confidence 33444444555566677777789999999999999999999999999999999999987 55677666666543321
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (318)
.+ +.....+ .+.+.+++.+...+....+..|..+ +++|+++.+..+.+..++..+++.+++.+.+
T Consensus 93 ----~~--~~~~l~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~---- 157 (394)
T PRK11652 93 ----AH--SLTVLIA----ASAIQGLGTGVGGVMARTLPRDLYE-GTQLRHANSLLNMGILVSPLLAPLIGGLLTT---- 157 (394)
T ss_pred ----Hc--cHHHHHH----HHHHHHhhhhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----
Confidence 11 1222222 2234555555544444556667654 4678888887777777776666555443332
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (318)
..+|++.+++.++..++..++..++.||++++++ ++.+.++.+++++|||+++......+....+......+
T Consensus 158 ------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T PRK11652 158 ------LFGWRACYLFLLLLGAGVTFSMARWMPETRPADA--RRTRVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEAC 229 (394)
T ss_pred ------ccChHHHHHHHHHHHHHHHHHHHHhCCccCcccc--chhHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHh
Confidence 2468988887776666665555566787643322 22235677889999999887766666666566666777
Q ss_pred hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+.++++.+|.++...+.+.....++.++++++.+|++||.
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~ 270 (394)
T PRK11652 230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 270 (394)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899988898877666665556677777888888887775
No 18
>PRK10133 L-fucose transporter; Provisional
Probab=99.88 E-value=1.6e-19 Score=170.33 Aligned_cols=295 Identities=12% Similarity=-0.007 Sum_probs=186.0
Q ss_pred cccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc
Q 021040 7 MNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF 86 (318)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~ 86 (318)
-+|.+.|+|+..+|-...-.....+..+...+.......++|.+-++.|+|+.+.|++.+.+.+...+++++.|.++||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~ 88 (438)
T PRK10133 9 QSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL 88 (438)
T ss_pred hhhhccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788878876666555554444555555556666666666666444699999999999999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHH
Q 021040 87 GHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTS 166 (318)
Q Consensus 87 Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~ 166 (318)
||||. +..+.++.+++..... +....+ +.... .+.+++.+++.+...+..++++.|.. ++++|....+
T Consensus 89 G~r~~-l~~g~~~~~~~~~l~~----~~~~a~--~~~~l----l~~r~l~G~g~g~~~~~~~~~v~~~~-~~~~~~~~~s 156 (438)
T PRK10133 89 SYKAG-IITGLFLYALGAALFW----PAAEIM--NYTLF----LVGLFIIAAGLGCLETAANPFVTVLG-PESSGHFRLN 156 (438)
T ss_pred CcHHH-HHHHHHHHHHHHHHHH----HHHhcC--CHHHH----HHHHHHHHHHHHHHHhhHHHHHHHhC-ChhhHHHHHH
Confidence 99998 6778888888765431 101111 22222 22234677888888888888888764 4456666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccC----c---c-cch--------hHHHHHHHHHHH-HHHHHHHHHHHhccccccc
Q 021040 167 CRNAFTMVANLSLYAIAFIVFSVSTAK----T---H-ADL--------ENQYRWIAYSSI-FIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 167 ~~~~~~~~g~~~~~~~~~~l~~~~~~~----~---~-~~~--------~~~~~~~~~i~~-~~~~l~~~~~~~~~~e~~~ 229 (318)
..+....+|..+++.++.++....... . . .+. ..+|++.++... +...+..++.....||.++
T Consensus 157 ~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~ 236 (438)
T PRK10133 157 LAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS 236 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 778888888888887766554111000 0 0 000 024555554333 3333333333333454322
Q ss_pred ccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh-hhccccccchhhHHHHHHHHHHHHHHHHHH
Q 021040 230 KMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV-INDLRMGQSAKALVPAIIYICSFIVSILLQ 307 (318)
Q Consensus 230 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl-~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~ 307 (318)
+++++ ++.+..+.+++++|||.++...+..++..........|.+.|+ ++.+|+++...+.......++.+++.++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g 316 (438)
T PRK10133 237 DNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGT 316 (438)
T ss_pred cccccccccchhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1223345678899999988777777777777777778889886 567899887666555555556666666666
Q ss_pred HHHHhh
Q 021040 308 VISLKL 313 (318)
Q Consensus 308 ~i~~~~ 313 (318)
++.||.
T Consensus 317 ~l~~r~ 322 (438)
T PRK10133 317 WLISRF 322 (438)
T ss_pred HHHHHc
Confidence 666553
No 19
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.88 E-value=9.1e-20 Score=170.10 Aligned_cols=252 Identities=13% Similarity=0.052 Sum_probs=171.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+.......-+|.|+++.|+|.+++|++..+... .+.+|++|+++||+ ||||+++.++.++.++++..+..
T Consensus 12 ~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~-- 87 (402)
T PRK11902 12 GLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAF-- 87 (402)
T ss_pred hhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHh--
Confidence 3444556677899999999999999999877776 48999999999999 99998888888888777665542
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
.+ +..+.+..+ +..++.+++.+..+++.+++++|..+ ++||+++.+++..+..+|.++++.++..+.+.
T Consensus 88 ~~----~~~~~~~l~----~~~~~~~~~~~~~~~~~~al~~~~~~-~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~-- 156 (402)
T PRK11902 88 CP----PHAALWPLA----GLAVLVAFLSASQDIVFDAYSTDVLH-PEERGAGAAVKVLGYRLAMLVSGGLALWLADR-- 156 (402)
T ss_pred cC----ccchHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcC-hhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc--
Confidence 11 111222111 11233456677788889999999975 57899999999988888888776655444321
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
..+||+.+++.+++.++..+. .++.||+++++++++ +++.++++++++|||.++..+...++........
T Consensus 157 -------~~gw~~~f~i~a~~~l~~~l~-~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~~~ 228 (402)
T PRK11902 157 -------VLGWGNTYLLMAGLMLAGALT-TLWAPEPEVPARPPRSLGEAVVGPLRDFFSRRGAWALLLLIVLYKLGDAFA 228 (402)
T ss_pred -------ccCHHHHHHHHHHHHHHHHHH-HHhcCCCcccccccchhHHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHHHH
Confidence 136898888877766555443 456677644322111 1234567889999999988777666666554444
Q ss_pred HHHhHHhhhhccccccchhhHHHHH-----HHHHHHHHHHHHHHHHH
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAI-----IYICSFIVSILLQVISL 311 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~-----~~v~~~i~~~~~~~i~~ 311 (318)
..+.+.++.+++|.++...+.+... ..+++.+++.+.||+++
T Consensus 229 ~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~ 275 (402)
T PRK11902 229 GSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGL 275 (402)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4566677888889887666554322 23455556666666654
No 20
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.88 E-value=3.9e-20 Score=169.73 Aligned_cols=266 Identities=10% Similarity=0.035 Sum_probs=170.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
++.+.....+....+++|.++++ .|+|+.+.|++.++..+..++.+++.|.++||+||||. +..+.++.+++......
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~~~~~ 86 (366)
T TIGR00886 8 FGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYT-TTLSLLLLAIPCLWAGL 86 (366)
T ss_pred HHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH
Confidence 33344445556666777766665 59999999999999999999999999999999999998 56777777777554321
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+. +.+...+. +++.+++.+.. .+..+++.|..+ +++|+++.++.....++|..+++.+++++...
T Consensus 87 -------~~~-~~~~~~~~----~~~~g~~~~~~-~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~ 152 (366)
T TIGR00886 87 -------AVQ-SYSVLLLL----RLFIGIAGGSF-ASCMPWISFFFP-KKIQGTALGLAAGWGNMGGGVAQFVMPPIIGS 152 (366)
T ss_pred -------Hhh-hHHHHHHH----HHHHHHhchhh-HhHHHHHHHhcC-HhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 110 22222222 23455554433 345667788775 57899999998888888888887777666653
Q ss_pred hccCcccchhHHHHHHH-HHHHHHHHHHHHHHHhcccccccccccCCC-----------CchHHHHHHHHhcHHHHHHHH
Q 021040 190 STAKTHADLENQYRWIA-YSSIFIGCCFVGIFLSRTEEPRLKMGLRGN-----------SHARISWAYWFKKILYYQVAL 257 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~-~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 257 (318)
+......+...+|+|.+ ++.+++..+..++.....+|++++++++++ ++..+..++.+++|+++...+
T Consensus 153 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (366)
T TIGR00886 153 LIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGKPATGKLSFKGARWSVGTGALGDQLKVFRDRHTWILAL 232 (366)
T ss_pred HHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCcccccchhcccccccccccchhHHHHHHHHhccchhhHHH
Confidence 32100000123788888 444555555555555555554322111110 011125677889999988888
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHH----HHHHHHHHHHH
Q 021040 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSF----IVSILLQVISL 311 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~----i~~~~~~~i~~ 311 (318)
..++.........++.|.|+++.+|.++...+.+..+..+.++ +++.+.||+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~ 290 (366)
T TIGR00886 233 LYSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGG 290 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhcc
Confidence 7777777777888999999999999887655544433334444 44555555544
No 21
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=99.87 E-value=1.5e-19 Score=170.19 Aligned_cols=295 Identities=11% Similarity=0.117 Sum_probs=174.6
Q ss_pred CCcccccccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh----CCChhH---HHHHHHHHHHHHH
Q 021040 1 MTSSTVMNYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRG---AAAVMLSGQIADG 73 (318)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~---~g~i~~~~~i~~~ 73 (318)
|..+||-.|..-.-.+ ++.+++....-.++.+........ .++..+++.+. +.+..+ .+.+++...+...
T Consensus 1 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (432)
T PRK10406 1 MAESTVTADSKLTSSD--TRRRIWAIVGASSGNLVEWFDFYV-YSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRP 77 (432)
T ss_pred CCccccccccccCCCC--cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 5677776654432333 333333333333444443333333 45666666653 355554 3445555566666
Q ss_pred HHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhc
Q 021040 74 FATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMV 151 (318)
Q Consensus 74 i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 151 (318)
++++++|+++||+||||. +..+.++++++...... .| +... ......+.+.+++.|++.+...+...+++
T Consensus 78 ig~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 149 (432)
T PRK10406 78 IGGWLFGRIADKHGRKKS-MLISVCMMCFGSLVIAC--LP-----GYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM 149 (432)
T ss_pred HHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHhh--cC-----CchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence 999999999999999998 56788877777654421 12 1100 01112233444567788877777778888
Q ss_pred cccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 021040 152 NCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231 (318)
Q Consensus 152 ~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~ 231 (318)
.|..| +++|++..+..+.+...|.+++..+...+.....+.. ....+||+.|++.++++++.. ......||+++.+
T Consensus 150 ~e~~p-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~--~~~~gWr~~F~i~~~~~ll~~-~~~~~~~e~~~~~ 225 (432)
T PRK10406 150 SEVAV-EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAE--LREWGWRIPFALGAVLAVVAL-WLRRQLDETSQQE 225 (432)
T ss_pred HHhCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH--HhccchHHHHHHHHHHHHHHH-HHHhcCCCCchHH
Confidence 99876 5789998888887777777766555433222111000 012579999987766665543 3334566654322
Q ss_pred ccCCCCchHHHHHHHHhcHHHHHHHHHHHHH-HHHHHHHHHHhHHhhhhccccccchhhHHHH----HHHHHHHHHHHHH
Q 021040 232 GLRGNSHARISWAYWFKKILYYQVALVYMLT-RLVVNVSQAYLAFYVINDLRMGQSAKALVPA----IIYICSFIVSILL 306 (318)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~ 306 (318)
+++ .+...++++++|||+++.......+. ....+...+|+|.|+++..|.+..+.+.... ...++..+.+.+.
T Consensus 226 ~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~ 303 (432)
T PRK10406 226 TRA--LKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALS 303 (432)
T ss_pred Hhh--hcccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11123577889999887766555543 5667778899999999988887644433222 2334445556666
Q ss_pred HHHHHh
Q 021040 307 QVISLK 312 (318)
Q Consensus 307 ~~i~~~ 312 (318)
||++||
T Consensus 304 Dr~grr 309 (432)
T PRK10406 304 DKIGRR 309 (432)
T ss_pred HHcCch
Confidence 666554
No 22
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.87 E-value=9.6e-20 Score=168.01 Aligned_cols=250 Identities=12% Similarity=0.056 Sum_probs=175.0
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
+...+..+.++.+.++.|+|+.+++++.++..+...+++++.|.++||+|||+. +..+.++.+++...... .
T Consensus 5 ~~~~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~i~~~~~~~-------~ 76 (377)
T PRK11102 5 LAIDMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPV-ILGGTLVFALAAVACAL-------A 76 (377)
T ss_pred hHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHH-HHHHHHHHHHHHHHHHH-------H
Confidence 344566688888888889999999999999999999999999999999999887 56777777776554421 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (318)
+ +.... .+..++.+++.+...++..+++.|..+ +++|++..++.+....+|..+++.+++.+..
T Consensus 77 ~--~~~~~----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~--------- 140 (377)
T PRK11102 77 Q--TIDQL----IYMRFLHGLAAAAASVVINALMRDMFP-KEEFSRMMSFVTLVMTIAPLLAPIIGGWLLV--------- 140 (377)
T ss_pred c--cHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 12221 222345677777777777888888875 5789999999988888888777666544442
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (318)
Q Consensus 198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (318)
..+|++.+++.+++.++..++..+..||+++++++++ .++..+++++++|+|+++..++...+...+......+.|.
T Consensus 141 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (377)
T PRK11102 141 -WFSWHAIFWVLALAAILAAALVFFFIPETLPKERRQPFHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSFLTAGPF 219 (377)
T ss_pred -HcChHHHHHHHHHHHHHHHHHHHHhCCccCcccccCCCChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 2468888888777777666666666777643322111 1123456678889999888777777766666777778888
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
++.+..|.++.+.+.+-....++.+++..+.+++.||
T Consensus 220 ~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r 256 (377)
T PRK11102 220 VYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRR 256 (377)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888889887665554444444444444444444444
No 23
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.87 E-value=7.8e-20 Score=171.17 Aligned_cols=273 Identities=10% Similarity=-0.025 Sum_probs=177.7
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (318)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~ 98 (318)
|++|+..+...++.+.+......... ..+.++ |.|++++++|++.+++.+..++++++.|+++||+||||. +..+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~-~~~~~~ 81 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGF-AGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRW-IAGIMV 81 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHH-HHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHH-HHHHHH
Confidence 44555555555554443444444443 344554 459999999999999999999999999999999999998 567777
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
+.+++..... +.++ .....+. +.+.+++.+...+...+++.|..+ +++|+++.+..+.+..+|..+
T Consensus 82 ~~~~~~~~~~-------~~~~--~~~l~~~----r~l~G~~~~~~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~~ 147 (412)
T TIGR02332 82 LWGIASTATM-------FATG--PESLYLL----RILVGIAEAGFLPGILLYLTFWFP-AYFRARANALFMIAMPVTMAL 147 (412)
T ss_pred HHHHHHHHHH-------HhcC--HHHHHHH----HHHHHHHHhhHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHH
Confidence 7777655432 1222 2222222 345667777665555567788775 578999999999888888888
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----c-C---------------CC-
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----L-R---------------GN- 236 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~-~---------------~~- 236 (318)
++.+++.+...-. .....+||+.+.+.++++++..++..+++||++++.+ + + ++
T Consensus 148 ~~~~~~~l~~~~~----~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 223 (412)
T TIGR02332 148 GLILSGYILALDG----LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEEDKKALKEMIDNDQLTLEQPEG 223 (412)
T ss_pred HHHHHHHHHhCCC----CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHHHHHHHHHHHHhcccccccccc
Confidence 7776655542100 0002479999988888877776667777888653210 0 0 00
Q ss_pred ---C---chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc-cccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021040 237 ---S---HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND-LRMGQSAKALVPAIIYICSFIVSILLQVI 309 (318)
Q Consensus 237 ---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-~g~~~~~~~~~~~~~~v~~~i~~~~~~~i 309 (318)
. ..++.+++++ +|.++...+.+++.........+|+|.|+++. .|.+....+.......++++++.++.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l 302 (412)
T TIGR02332 224 AFAHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRH 302 (412)
T ss_pred ccccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHH
Confidence 0 0122344443 57788888888888888888999999999883 35665444444444455555555555555
Q ss_pred HHhh
Q 021040 310 SLKL 313 (318)
Q Consensus 310 ~~~~ 313 (318)
+||+
T Consensus 303 ~dr~ 306 (412)
T TIGR02332 303 SDRL 306 (412)
T ss_pred hccc
Confidence 5554
No 24
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.87 E-value=2.2e-19 Score=171.14 Aligned_cols=254 Identities=10% Similarity=0.018 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
.+.++++.+.++.|++.++.|++.+...+...+++++.|+++||+|||+. +..+.+..+++..... +.+ +
T Consensus 54 ~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~-~~~~~~~~~~~~~~~~-------~~~--s 123 (476)
T PLN00028 54 AAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYG-SAFLLMLTAPAVFCMS-------LVS--S 123 (476)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHH-------Hhc--C
Confidence 34455566666679999999999999999999999999999999999988 5667776666654332 111 2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
.....+. +++.+++.+... +...++.+..+ +++|+++.++.+...++|..+++.+.+.+...+...+ .+...+
T Consensus 124 ~~~l~~~----r~l~G~~~~~~~-~~~~~i~~~~~-~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~-~~~~~g 196 (476)
T PLN00028 124 ATGFIAV----RFFIGFSLATFV-SCQYWMSTMFN-GKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG-APSFTA 196 (476)
T ss_pred HHHHHHH----HHHHHHHHHhhH-HHHHHHHHhcC-hhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccchhh
Confidence 2222222 234555554432 33445677775 5789999999887777787777666533333221100 001247
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccc--c--cC---CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021040 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--G--LR---GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 274 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~--~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (318)
||+.+++.++++++..++..++.+++++++ + ++ ++.+..+.+++.+++++++.+.+.+++.........+++|
T Consensus 197 Wr~~f~i~g~l~l~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 276 (476)
T PLN00028 197 WRIAFFVPGLLHIIMGILVLTLGQDLPDGNYRELKKSGTMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIA 276 (476)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcCcCCCCchhhHHhcCccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHH
Confidence 999999888887777666655544433211 0 01 1112234567788899988887777666666666778899
Q ss_pred HhhhhccccccchhhHHHH----HHHHHHHHHHHHHHHHHHh
Q 021040 275 FYVINDLRMGQSAKALVPA----IIYICSFIVSILLQVISLK 312 (318)
Q Consensus 275 ~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~~~i~~~ 312 (318)
.|+.+..|++....+.+.. ...++.++++++.||+++|
T Consensus 277 ~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r 318 (476)
T PLN00028 277 EYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARR 318 (476)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence 9999988998755444443 3445556666666666654
No 25
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.87 E-value=1.1e-19 Score=170.20 Aligned_cols=253 Identities=11% Similarity=0.043 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~ 113 (318)
+...+...+..+-+|..-++.|.+.++.++..+++.+..++++++.|.++||+||||. +..+..+.+++.....
T Consensus 26 ~~~~~~~~~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~-l~~~~~~~~~~~~~~~----- 99 (413)
T PRK15403 26 FAAYLTTDLIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPV-LITGALIFTLACAATL----- 99 (413)
T ss_pred HHHHHHHHhhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHH-HHHHHHHHHHHHHHHH-----
Confidence 3333444444455555445569999999999999999999999999999999999998 5667777776654332
Q ss_pred CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (318)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (318)
+.+ +.....+. +++.+++.+.......+.+.|..+ +++|++..++.+....+|..+++.+++.+..
T Consensus 100 --~a~--~~~~l~~~----r~l~Gi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~----- 165 (413)
T PRK15403 100 --FTT--SMTQFLIA----RFIQGTSICFIATVGYVTVQEAFG-QTKGIKLMAIITSIVLVAPIIGPLSGAALMH----- 165 (413)
T ss_pred --HcC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 122 22322222 234555555444444566677764 5778888888888878887777666544432
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (318)
..+|++.+++.++++++..+...+..||++++++++ ++.+..+++++++|||.++...+...+..........+
T Consensus 166 -----~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~ 240 (413)
T PRK15403 166 -----FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKRGAVPFSAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSWVAV 240 (413)
T ss_pred -----hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCCChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 247999998888777776665556678864332211 12234567889999999999888888877777777788
Q ss_pred hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL 311 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~ 311 (318)
.|.++++..|.+....+........++++++.+.+|+.+
T Consensus 241 ~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~ 279 (413)
T PRK15403 241 SPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVK 279 (413)
T ss_pred ChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999998876666554455666666666666553
No 26
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.87 E-value=1.1e-19 Score=167.12 Aligned_cols=253 Identities=11% Similarity=-0.022 Sum_probs=158.7
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+...+...+..+++++|+++ .|.|+.++|++.+++.+...+.+|+.|.++||+||||+++..+.+..+++.....
T Consensus 6 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~--- 82 (375)
T TIGR00899 6 AFLTGIAGALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA--- 82 (375)
T ss_pred HHHHHHHHHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH---
Confidence 445566677788999999876 5999999999999999999999999999999999999865555555444433222
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHH--HHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVL--TSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~--~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
+++ +.+...+. ..+.+.+.+...+...++..|..+ +++|... .+....+.++|..+++.+++.+.+
T Consensus 83 ----~~~--~~~~l~~~----~~~~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~- 150 (375)
T TIGR00899 83 ----WNR--NYFLLLVL----GVLLSSFASTANPQLFALAREHAD-RTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL- 150 (375)
T ss_pred ----hcc--hHHHHHHH----HHHHHhhhhhhHHHHHHHHHHHhh-hcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHH-
Confidence 111 22222211 223333334444445566666654 3445432 455566666777766655444432
Q ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
..+|++.+++.+++.++..++..+.+||+++++++++ ...+.++.+|+|+++......++........
T Consensus 151 ---------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T TIGR00899 151 ---------GFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL---TRLEVRGLLASRDTRLLFVACTLMWGCNILY 218 (375)
T ss_pred ---------hcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc---CcchhhhhhcCcchHHHHHHHHHHHHHHHHH
Confidence 2479999988887777666666666787644322111 1233456778888877666666655555566
Q ss_pred HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
..++|.|++++.|.++...+.+.....+...++..+.+++.||
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r 261 (375)
T TIGR00899 219 IINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKR 261 (375)
T ss_pred HhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 6788999999889887655544333333333344444444444
No 27
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.87 E-value=1e-19 Score=167.37 Aligned_cols=241 Identities=13% Similarity=0.098 Sum_probs=169.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126 (318)
Q Consensus 47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 126 (318)
.|.+.++.|++..+.|++.++..+...+++++.|.++||+||||. +..+.++.+++...... .+ +.+..
T Consensus 17 ~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~- 85 (399)
T TIGR00893 17 APMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKT-LAVFIVIWGVFTGLQAF-------AG--AYVSL- 85 (399)
T ss_pred HHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCccee-eHHHHHHHHHHHHHHHH-------Hc--CHHHH-
Confidence 344444459999999999999999999999999999999999998 45677666666543321 11 12222
Q ss_pred HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHH
Q 021040 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIA 206 (318)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 206 (318)
.+.+++.+++.+...+...+++.|..+ +++|++..++.+....+|.++++.+++.+.. ..+|++.+
T Consensus 86 ---~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~~~~~~~~ 151 (399)
T TIGR00893 86 ---YILRVLLGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILI----------HFSWQWAF 151 (399)
T ss_pred ---HHHHHHHHHHHHhhhhHHHHHHHHhCC-HHHHHHHHHHHHHhchHHHHHHHHHHHHHHH----------hCCchHHH
Confidence 222345777777777777888888875 5789999999999988888877666544432 24688888
Q ss_pred HHHHHHHHHHHHHHHhcccccccccc-----cC---------------CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040 207 YSSIFIGCCFVGIFLSRTEEPRLKMG-----LR---------------GNSHARISWAYWFKKILYYQVALVYMLTRLVV 266 (318)
Q Consensus 207 ~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
.+.+++.++..++..+..||++++++ ++ +++..++..++.+|+|+++......++.....
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (399)
T TIGR00893 152 IIEGVLGIIWGVLWLKFIPDPPQKAKWLTEEEKYIVVGGLLAEQQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGL 231 (399)
T ss_pred HHHHHHHHHHHHHhhheecCCCCccccCCHHHHhhcchhhccccccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHH
Confidence 88777777666666666666543210 00 00112334678899999999988888888888
Q ss_pred HHHHHHhHHhhhhccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040 267 NVSQAYLAFYVINDLRMGQSAKALVPAI----IYICSFIVSILLQVISLK 312 (318)
Q Consensus 267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~ 312 (318)
.....++|.|+++..|.+....+.+... ..++..+++.+.||+++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 281 (399)
T TIGR00893 232 GFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRR 281 (399)
T ss_pred HHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8999999999999999886554444333 334555666666666665
No 28
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.87 E-value=1e-19 Score=169.85 Aligned_cols=261 Identities=11% Similarity=0.054 Sum_probs=173.4
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
...++.+.+.....+..+.++.+.++.|.|+.+.++..+.+.+...+.+++.|.++||+||||. +..+.+..+++....
T Consensus 17 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~ 95 (406)
T PRK15402 17 CLVLFEFATYIANDMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPV-MLAGVAFFILTCLAI 95 (406)
T ss_pred HHHHHHHHHHhhhhhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHH
Confidence 3334444444556666677777667779999999999999999999999999999999999998 566776666665543
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
.. .+ +...... .+.+.+++.+...+...+.+.|..+ +++|.+..+.......++..+++.+++.+.
T Consensus 96 ~~-------~~--~~~~l~~----~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~ 161 (406)
T PRK15402 96 LL-------AQ--SIEQFTL----LRFLQGIGLCFIGAVGYAAIQESFE-EADAIKITALMANVALLAPLLGPLVGAALI 161 (406)
T ss_pred HH-------Hc--cHHHHHH----HHHHHHhHhhhHHHHHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 1222222 2234555555555555666777765 467777777766665666665555443333
Q ss_pred HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-GNSHARISWAYWFKKILYYQVALVYMLTRLVV 266 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
+ ..+|++.+++.+++..+..+...+..||++++++++ +.++..+++++++|||+++...+...+.....
T Consensus 162 ~----------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (406)
T PRK15402 162 H----------VLPWRGMFVLFAALAALSFFGLWRAMPETAGRVGEKLSLKELGRDYKLVLKNRRFVAGALALGLVSLPL 231 (406)
T ss_pred H----------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCccccccccHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2 246888888877777666665556667764332111 11234567788999999988877776666666
Q ss_pred HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
....++.|.|+.+.+|.++.+.+.......++++++..+.++++||.
T Consensus 232 ~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~ 278 (406)
T PRK15402 232 LAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRR 278 (406)
T ss_pred HHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66677789999888898876655554444556666666777776664
No 29
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.87 E-value=1.5e-19 Score=165.61 Aligned_cols=254 Identities=14% Similarity=0.088 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
..+.+|.+.+|.|+|.+++|+.... .+...+ ++++|.++||+ ||||+++..+.+..++++..+.+ .+
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~--~~---- 78 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSF--LV---- 78 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHc--CC----
Confidence 4456778888889999999999766 344444 99999999997 99999877777777776544422 11
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (318)
+..+.+... ...++.+.+.+...++..++++|.++ +|+|+++.+++..+..+|.++++.+++.+....+..+.
T Consensus 79 ~~~~l~~l~----~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~-- 151 (356)
T TIGR00901 79 PSTDLPLLA----GLAFLIAFFSATQDIALDAWRLEILS-DEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG-- 151 (356)
T ss_pred cchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCC-HhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--
Confidence 111222111 11233456667778889999999985 58999999999999999998887777665544331100
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHH---HHHHHHHHHHHHHHHHHHHHH
Q 021040 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKIL---YYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 272 (318)
...+||+.+++.++..++..++.++..||++++++++ ++++.++.+++++|||. ++...+..++.........++
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEPQEDASVPKPLTQAVLKPIREFFQRKNMIQALLLLLLIVLYKLGDSAATVL 231 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCCCcccccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234898888877766665555554567754321111 11223456788888875 777777777778888888899
Q ss_pred hHHhhhhccccccchhhHHHH-----HHHHHHHHHHHHHHHHHHh
Q 021040 273 LAFYVINDLRMGQSAKALVPA-----IIYICSFIVSILLQVISLK 312 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~-----~~~v~~~i~~~~~~~i~~~ 312 (318)
+|.|+++ .|.++.+.+.+-. ...++.++++.+.||+++|
T Consensus 232 ~~~~l~~-~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 275 (356)
T TIGR00901 232 TTLFLLD-MGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNIL 275 (356)
T ss_pred HHHHHHH-cCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999998 8888765543332 2335667777777777754
No 30
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.87 E-value=3.1e-19 Score=166.55 Aligned_cols=252 Identities=13% Similarity=0.028 Sum_probs=171.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
..++..........++++.|+++. |.|+.++|++.+...+...+.+|+.|+++||+||||. +..+.++.+++......
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~-l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 17 IDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPM-IVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHH-HHHHHHHHHHHHHHHHH
Confidence 444555666677889999998775 9999999999999999999999999999999999888 56787777777654421
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+ +.+...+ ..++.+++.+...++..+++.|..+ +++|+++.++.+...++|..+++.+++.+.
T Consensus 96 -------~~--~~~~l~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-- 159 (400)
T PRK11646 96 -------AH--EPWLLWL----SCILSGLGGTLFDPPRTALVIKLIR-PHQRGRFFSLLMMQDSAGAVIGALLGSWLL-- 159 (400)
T ss_pred -------hc--cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 11 2232222 2234566666666777788888875 578999999999999999888877765554
Q ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
..+|++.+++.++..++..++.....||+++++ .+++.++++++++|||+++..+...+.........
T Consensus 160 ---------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (400)
T PRK11646 160 ---------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLST---VRTPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQV 227 (400)
T ss_pred ---------HhhHHHHHHHHHHHHHHHHHHHHHhCCcccccc---cchhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 147888888777666665555445556542211 12234567788999999887665555444444445
Q ss_pred HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
..++|.|+++..+ ++...+.+..+..+.+.......+++.+|
T Consensus 228 ~~~~p~~~~~~~~-~~~~~g~l~~~~~~~~~~~~~~~~~~~~~ 269 (400)
T PRK11646 228 MLMLPIMVNDIAG-SPSAVKWMYAIEACLSLTLLYPIARWSEK 269 (400)
T ss_pred HHhhhhhHHhhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999988766 44444444333333344333334444433
No 31
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.87 E-value=3.4e-19 Score=165.52 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 36 NDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 36 ~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
.........+.+|.+.++.|.+..+.+++.+.+.+...+++|+.|+++||+||||. +..+.++.+++......
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~i~~~~~~~------ 87 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPV-AIPGAALFIIASLLCSL------ 87 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHH-HHHHHHHHHHHHHHHHH------
Confidence 34444555566777777789999999999999999999999999999999999887 56777777777654431
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (318)
.+ +.....+. +++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+..
T Consensus 88 -~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~------- 152 (392)
T PRK10473 88 -AE--TSSLFLAG----RFLQGIGAGCCYVVAFAILRDTLD-DRRRAKVLSLLNGITCIIPVLAPVLGHLIML------- 152 (392)
T ss_pred -hC--cHHHHHHH----HHHHHhhhhHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 11 12222222 234566666666666778888775 5789999999888877777666555443332
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 021040 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAF 275 (318)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (318)
..+|++.+++.++++.+..++.....||++++++ +++.+..+..++.+|||+++.......+..........+.|.
T Consensus 153 ---~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (392)
T PRK10473 153 ---KFPWQSLFYTMAAMGILVLLLSLFILKETRPARA-PAASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNTSPV 228 (392)
T ss_pred ---CcChHHHHHHHHHHHHHHHHHHHHHcCCCCCccc-CCccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence 2468888888887777777766677787654322 222233455677889998877666555555555556667788
Q ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 276 YVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 276 yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++.+++|.++...+.+.....+.++++..+.+++.||+
T Consensus 229 ~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~ 266 (392)
T PRK10473 229 LLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIF 266 (392)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888898876555444444455555555555555553
No 32
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.87 E-value=1.7e-20 Score=178.40 Aligned_cols=252 Identities=12% Similarity=0.012 Sum_probs=164.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
...+...+|+|++.++.|++.+.+.+..++++|+.|+++||+||||. +..+.+..++....... .+++..+ +...
T Consensus 50 ~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~~~~~--~~~~~~~--~~~~ 124 (467)
T PRK09556 50 AAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQF-LPFLLILSAICMLGFGA--SLGSGSV--SLGL 124 (467)
T ss_pred hhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccch-HHHHHHHHHHHHHHHHH--HHhcccc--hHHH
Confidence 34566566679999999999999999999999999999999999998 45566665555432211 2222221 2222
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (318)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (318)
.. +.+++.|++.+...++..+++.+..+ ++||+++.++.+.+.++|.++++.+...+..... ..+|+.
T Consensus 125 l~----~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~-------~~~~~~ 192 (467)
T PRK09556 125 MI----ALWALSGFFQSTGGPCSYSTITRWTP-RRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF-------DGHVIG 192 (467)
T ss_pred HH----HHHHHHHHHHhccchHHHHHHHHHcC-ccceeeeEEeeecccchhhhHHHHHHHHHHHhhc-------cCcchh
Confidence 22 22345667666666666778888876 5789999999888888888877665433332211 024777
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccc-----c-----c---CC----C--CchHHHH-HHHHhcHHHHHHHHHHHHHHH
Q 021040 205 IAYSSIFIGCCFVGIFLSRTEEPRLKM-----G-----L---RG----N--SHARISW-AYWFKKILYYQVALVYMLTRL 264 (318)
Q Consensus 205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~-----~-----~---~~----~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 264 (318)
.+.+.++++++.+++.++..+|++++. + + ++ + .+..+.+ ++.+|||.++...+..++...
T Consensus 193 ~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 272 (467)
T PRK09556 193 MFIFPSIIALIIGFIGLRYGSDSPEELGWGKAEEIFGEPISEEDKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYI 272 (467)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCChhhcCCCChhhcccCccchhhhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 777777777766666666665543210 0 0 00 0 0111222 347899999999888888888
Q ss_pred HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
......+|+|.|+++.+|++....+.......++++++..+.++++||+
T Consensus 273 ~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~ 321 (467)
T PRK09556 273 VRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLA 321 (467)
T ss_pred HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8878889999999999999876554444444444555555555555543
No 33
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.86 E-value=9.6e-20 Score=172.57 Aligned_cols=247 Identities=14% Similarity=0.067 Sum_probs=156.7
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125 (318)
Q Consensus 46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 125 (318)
+..+++.+.|+++.+.|++.+...+..++++|+.|+++||+||||. +.++.++.+++...... .+. ...+....
T Consensus 50 ~~~p~l~~~g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~-l~~~~~~~~i~~~~~~~--~~~---~~~~~~~~ 123 (452)
T PRK11273 50 LAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLFMGF--VPW---ATSSIAVM 123 (452)
T ss_pred HhhHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchh-HHHHHHHHHHHHHHHHh--hhc---ccccHHHH
Confidence 3445565559999999999999999999999999999999999997 56677776666553321 110 01112211
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hhccCcccchhHHHHH
Q 021040 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-VSTAKTHADLENQYRW 204 (318)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 204 (318)
.+. ..+.+++.+...++....+.+..+ +++|+++.++.+.+.++|..+. +++.. ... ...+|++
T Consensus 124 ~~~----~~l~gi~~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~----~~l~~~~~~------~~~gw~~ 188 (452)
T PRK11273 124 FVL----LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGLP----PLLFLLGMA------WFNDWHA 188 (452)
T ss_pred HHH----HHHHHHHHhccchHHHHHHHHhCC-hHHHHHHHHHHHHHHHhhhhHH----HHHHHHHHH------HhccHHH
Confidence 222 234555555555555556667665 5789999998888777765332 22221 111 0247999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccc----cc-----------C---CCCchHHHH-HHHHhcHHHHHHHHHHHHHHHH
Q 021040 205 IAYSSIFIGCCFVGIFLSRTEEPRLKM----GL-----------R---GNSHARISW-AYWFKKILYYQVALVYMLTRLV 265 (318)
Q Consensus 205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~----~~-----------~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 265 (318)
.+++.+++.++..++..++.||++++. ++ + ++.+.++.+ +.++|||.++...+..++.+..
T Consensus 189 ~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 268 (452)
T PRK11273 189 ALYMPAFAAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 268 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCHhhcCCCChhhhhhccccccccccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 998887777776666667777754320 00 0 001112222 3477899999988888888887
Q ss_pred HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+...+|+|.|++++.|++....+....+..++++++.++.++++||.
T Consensus 269 ~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~ 316 (452)
T PRK11273 269 RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 316 (452)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788889999999999888865544433333344444444444444444
No 34
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.86 E-value=5.1e-19 Score=169.21 Aligned_cols=265 Identities=14% Similarity=0.081 Sum_probs=176.0
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-----cCchHHHHHHHH
Q 021040 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF-----GHFKIWHGAGSV 98 (318)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-----Grr~~~l~~g~~ 98 (318)
++.+.+....+...+......+.++.++++.|.|..++|....+.... +.++++|.++||+ ||||+|+..+.+
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~--~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i 89 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAY--VFKFLWSPLMDRYTPPFLGRRRGWLLATQL 89 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHcccccCCCCchHHHHHHHH
Confidence 334444444445556666777888999999999999999974444432 6899999999998 999998888887
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
..+++...+.. .+ +..+...... ..++.+++.+..+++..++..|..+ ++||++..++...+..+|.++
T Consensus 90 ~~~~~~~~~a~--~~----~~~~l~~l~~----~~~l~~~~~a~~~i~~~a~~~~~~~-~~~rg~~~~i~~~g~~lG~ll 158 (491)
T PRK11010 90 LLLVAIAAMGF--LE----PGTQLRWLAA----LAVVIAFCSASQDIVFDAWKTDVLP-AEERGAGAAISVLGYRLAMLV 158 (491)
T ss_pred HHHHHHHHHHH--cC----CcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcC-hhhhHHHHHHHHHHHHHHHHH
Confidence 77776544421 11 1122222222 2234567777888889999999976 578999999999988888887
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--CCchHHHHHHHHhcHHHHHHH
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--NSHARISWAYWFKKILYYQVA 256 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 256 (318)
++.+...+.+. ..+||+.+++.++++++..+..+ +.||+++++++++ +++..+++++.+++|..+...
T Consensus 159 g~~l~~~l~~~---------~~GWr~~f~i~a~l~ll~~l~~~-~~~e~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 228 (491)
T PRK11010 159 SGGLALWLADR---------YLGWQGMYWLMAALLIPCIIATL-LAPEPTDTIPVPKTLEQAVVAPLRDFFGRNNAWLIL 228 (491)
T ss_pred HHHHHHHHHhc---------ccCHHHHHHHHHHHHHHHHHHHH-hcCCCccccccccchhhhHHHHHHHHHcCcCHHHHH
Confidence 76655444321 13799999888877666644443 4788643321111 112235677888888777666
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHH-HHHH----HHHHHHHHHHHHHHH
Q 021040 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP-AIIY----ICSFIVSILLQVISL 311 (318)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~-~~~~----v~~~i~~~~~~~i~~ 311 (318)
...++..........+.+.|+.++.|++..+.+... .... +++++++.+.||+++
T Consensus 229 l~~~l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~ 288 (491)
T PRK11010 229 LLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSL 288 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 555666666666677888898888899887665543 2333 455555666666654
No 35
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.86 E-value=3.5e-19 Score=165.23 Aligned_cols=268 Identities=14% Similarity=0.056 Sum_probs=165.2
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
+|+......++.+.............+.+.++.|++.+++|++.++..+...+++|+.|.++||+||||++ ..+.++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~-~~~~~~~~ 88 (405)
T TIGR00891 10 QWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPM-VTSIVLFS 88 (405)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHH
Confidence 34444555566666666666666666666566799999999999999999999999999999999999984 56776666
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++...... .+ +..... +.+++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.
T Consensus 89 ~~~~~~~~-------~~--~~~~l~----~~~~l~G~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~ 154 (405)
T TIGR00891 89 AGTLACGF-------AP--GYITMF----IARLVIGIGMGGEYGSSAAYVIESWP-KHLRNKASGLLISGYAVGAVVAAQ 154 (405)
T ss_pred HHHHHHHH-------hc--cHHHHH----HHHHHHHhhhhhhhHHHHHHHHHhCC-hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66544321 11 222222 22345677777777777788888876 478999999999888888888776
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-CCCCchHHHHHHHHh------------
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFK------------ 248 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~------------ 248 (318)
+++.+....+ .+|++.+.+.++..++ .++.....||+++.+++ ++++...+..++..+
T Consensus 155 l~~~l~~~~~--------~~w~~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (405)
T TIGR00891 155 VYSLVVPVWG--------DGWRALFFISILPIIF-ALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIANIVMTL 225 (405)
T ss_pred HHHHHHHhcC--------ccHHHHHHHHHHHHHH-HHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhhhhhhh
Confidence 6555443211 3588888765544433 33444556775421110 000000011111110
Q ss_pred ---------c--HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 249 ---------K--ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 249 ---------~--~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+ +.+........+..........++|.|+.++.|.+..+.+.+.....++++++..+.++++||+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 301 (405)
T TIGR00891 226 AAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWL 301 (405)
T ss_pred hHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 0122223333334444456667889999999998876655554444455555555555555554
No 36
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=99.86 E-value=4e-19 Score=170.23 Aligned_cols=265 Identities=11% Similarity=0.021 Sum_probs=183.0
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i 102 (318)
|......+++.+...+..++.+.-+|....++|.+..+.+++.+.+.+..+..+|+.|+++||+||||. +..+.++.++
T Consensus 5 ~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~-l~~~~~~~~~ 83 (495)
T PRK14995 5 WLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRL-LMLGGTLFGL 83 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHH
Confidence 444566667777777777788888888888889999999999999999999999999999999999998 5678877777
Q ss_pred HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
+..... ..+ +.+..++. +.+.+++.+...+.....+.+..+++++|+++.++......+|..+++.+
T Consensus 84 ~~~~~~-------~a~--~~~~li~~----r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~l 150 (495)
T PRK14995 84 ASLAAA-------FSP--TASWLIAT----RALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLV 150 (495)
T ss_pred HHHHHH-------HcC--CHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 755432 122 22322222 34566776665555555555555456889999999988888888887776
Q ss_pred HHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCC----------------------C---
Q 021040 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGN----------------------S--- 237 (318)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~----------------------~--- 237 (318)
++.+.. ..+|||.+++...++++..++..+..||++++++++.+ .
T Consensus 151 gg~l~~----------~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~ 220 (495)
T PRK14995 151 GGILLE----------HFYWGSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHALMLIVAILLLVYSAKTALKGFL 220 (495)
T ss_pred HHHhhc----------cCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCChHhHHHHHHHHHHHHHHHHhccccCC
Confidence 655543 25799999887777777666666677775432211100 0
Q ss_pred ch------------------HHHH--------HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040 238 HA------------------RISW--------AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (318)
Q Consensus 238 ~~------------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~ 291 (318)
.. ..+. .+++|||.+.......++..........++|.|+++.+|.++.+.+..
T Consensus 221 ~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lq~v~g~s~~~ag~~ 300 (495)
T PRK14995 221 SLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAMTAMITLVGFELLMAQELQFVHGLSPLEAGMF 300 (495)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 00 0000 257788888877777777777777788899999999999998655544
Q ss_pred HHHHHH----HHHHHHHHHHHHHH
Q 021040 292 PAIIYI----CSFIVSILLQVISL 311 (318)
Q Consensus 292 ~~~~~v----~~~i~~~~~~~i~~ 311 (318)
.....+ ++.+++.+.||+++
T Consensus 301 ~~~~~~~~~~~~~~~g~l~~r~g~ 324 (495)
T PRK14995 301 MLPVMVASGFSGPIAGILVSRLGL 324 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCc
Confidence 443334 44555555555543
No 37
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.86 E-value=3.6e-19 Score=163.12 Aligned_cols=244 Identities=11% Similarity=-0.015 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
.+.++.|...++.|+|.+++|++.++..+...+++|+.|.++||+||||++ ..+.++.+++..... +.+ +
T Consensus 21 ~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~-~~~~~~~~~~~~~~~-------~~~--~ 90 (377)
T TIGR00890 21 TWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVA-MLGGILYGLGFTFYA-------IAD--S 90 (377)
T ss_pred hhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchh-HHhHHHHHHHHHHHH-------HHH--H
Confidence 344444554455699999999999999999999999999999999999984 567777777654332 111 2
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
.+...+. +.+.+++.+...........+.. +++|+++.+....+..+|..++ +|+...+.. ..+
T Consensus 91 ~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~----~~~~~~~~~------~~~ 154 (377)
T TIGR00890 91 LAALYLT----YGLASAGVGIAYGIALNTAVKWF--PDKRGLASGIIIGGYGLGSFIL----SPLITSVIN------LEG 154 (377)
T ss_pred HHHHHHH----HHHHhHHHHHHHHhHHHHHHHHc--CcccHHHHHHHHHhcchhHhHH----HHHHHHHHh------ccc
Confidence 2222222 23455555544333344444544 3579999998888777776543 344333221 257
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhh
Q 021040 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIN 279 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~ 279 (318)
||+.+++.+++..+..+...+.+||++++++++ +..+...+.++.+|||+++......++..........+.+.|.++
T Consensus 155 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (377)
T TIGR00890 155 VPAAFIYMGIIFLLVIVLGAFLIGYPPGQLIKTNIEVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGLYKPYGQS 234 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheecCchhccccCcccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999998888877777766666676654332111 111223356788899998877776666666655566677777644
Q ss_pred ccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040 280 DLRMGQSAKALVPAI----IYICSFIVSILLQVISLK 312 (318)
Q Consensus 280 ~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~ 312 (318)
.|.++...+.+..+ ..++..+++.+.||+++|
T Consensus 235 -~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~ 270 (377)
T TIGR00890 235 -LGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQ 270 (377)
T ss_pred -cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 67665444333333 334555555666665554
No 38
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.86 E-value=2.7e-20 Score=167.74 Aligned_cols=247 Identities=15% Similarity=0.065 Sum_probs=182.5
Q ss_pred HHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040 46 YLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (318)
Q Consensus 46 ~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
+-.+++.|. |+|++|.|++.+.+.+...++..+.|.++||.+.|+- +..|+++.++..+++- ++ .+...
T Consensus 50 ~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~f-m~~gLilsai~nil~G-------fs--~s~~~ 119 (448)
T COG2271 50 LAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYF-MAFGLILSAIVNILFG-------FS--PSLFL 119 (448)
T ss_pred hccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCcee-ehHHHHHHHHHHHHHh-------hh--hHHHH
Confidence 345666665 7999999999999999999999999999999999876 7889999888876542 12 12222
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (318)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (318)
.. ++-.+.+..-+...+|....+....+ ++|||+..++.+..-|+|+.+.+.+... +.+.. ..+||.
T Consensus 120 ~~----~l~~lng~fQg~Gwpp~~~~i~~Wfs-r~eRG~~~siWn~shNiGGal~~~~~~l--a~~~~------~~~w~~ 186 (448)
T COG2271 120 FA----VLWVLNGWFQGMGWPPCARTITHWFS-RKERGTWWSIWNTSHNIGGALAPLVALL--AFFAF------HGGWRA 186 (448)
T ss_pred HH----HHHHHHHHHhcCCCcHHHHHHHHHcC-ccccCceEEEehhhhhcccchHHHHHHH--HHHHh------ccchhH
Confidence 12 22234555556666666677777765 6899999999999999998776554411 32221 247999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccccc---------------cCCCC----chH-HHHHHHHhcHHHHHHHHHHHHHHH
Q 021040 205 IAYSSIFIGCCFVGIFLSRTEEPRLKMG---------------LRGNS----HAR-ISWAYWFKKILYYQVALVYMLTRL 264 (318)
Q Consensus 205 ~~~i~~~~~~l~~~~~~~~~~e~~~~~~---------------~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
.|++.++++++.+++.++..||+|++.. +++++ +.+ .-++.++|||..|.+++++++...
T Consensus 187 ~f~~pgiiaiival~~~~~~rd~Pqs~GLP~ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 187 AFYFPGIIAIIVALILLFLLRDRPQSEGLPPIEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 9999999999999999888888764310 01111 112 236788999999999999999999
Q ss_pred HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
.=+....|.|.|+.|..|++...........=++++.++++.+.+|||++.
T Consensus 267 vR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfk 317 (448)
T COG2271 267 VRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFK 317 (448)
T ss_pred HHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc
Confidence 999999999999999999997655444444446777777777777777764
No 39
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.86 E-value=6.9e-20 Score=166.61 Aligned_cols=255 Identities=18% Similarity=0.177 Sum_probs=172.2
Q ss_pred chHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+..........+.++.++.+ .|.|+.++|++.++..+...+.+++.|.++||+||||. +..+.++.+++.....
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~--- 80 (352)
T PF07690_consen 5 FFLSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRV-LIIGLLLFALGSLLLA--- 80 (352)
T ss_dssp HHHHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeee-EeehhhhhhhHHHHhh---
Confidence 344455556666667745555 59999999999999999999999999999999999996 6778888777733222
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
+.++ .+.. .+..++.+++.+...+...+++.|..++ ++|++..+..+....+|.++++.+++.+..
T Consensus 81 ----~~~~--~~~~----~~~~~l~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~--- 146 (352)
T PF07690_consen 81 ----FASN--FWLL----LIARFLLGIGSGFFSPASNALIADWFPP-EERGRAFGILSAGFSLGSILGPLLGGFLIS--- 146 (352)
T ss_dssp ----HHCC--HHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHHHHHHHCCC---
T ss_pred ----hhhh--HHHH----hhhccccccccccccccccccccccchh-hhhhhccccccchhhhhhhcccchhhhhhh---
Confidence 1111 2222 2233467788788888888999999864 799999999999888888776555433221
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCC-----chH-HHHHHHHhcHHHHHHHHHHHHHH
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNS-----HAR-ISWAYWFKKILYYQVALVYMLTR 263 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~--~~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~ 263 (318)
..+|++.+++.+++.++..++...+.+|+++++++ ++++ +.. +.++.++++|.++......++..
T Consensus 147 -------~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T PF07690_consen 147 -------YFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESESKKPKPLKPGFKSLFKNPVLWILLIAFFLFF 219 (352)
T ss_dssp -------HCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--HHHCCCH-CTHHHHHHCCHHHHHHHHHHH
T ss_pred -------ccccccccccccchhhhhhhhHhhhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhHHH
Confidence 35788898888888777766544455544332211 1111 111 23677888887775555556666
Q ss_pred HHHHHHHHHhHHhhhhccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 264 LVVNVSQAYLAFYVINDLRMG-QSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 264 ~~~~~~~~~~~~yl~~~~g~~-~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
........+.|.|+.+.+|.+ ....+.+..+..+.+.++..+.+++.||
T Consensus 220 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (352)
T PF07690_consen 220 FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDR 269 (352)
T ss_dssp HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778899999999999999 5555555555555665556666666665
No 40
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.85 E-value=1.7e-18 Score=161.18 Aligned_cols=255 Identities=9% Similarity=-0.047 Sum_probs=175.3
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
.+.++.+...+.........++..++.+.++.+.+++.+.+.+...+.+|+.|+++||+||||. +.++.++.+++...+
T Consensus 7 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~v-l~~~~~~~~~~~~~~ 85 (393)
T PRK11195 7 AIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRV-MFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchh-hHHHHHHHHHHHHHH
Confidence 4555666656655555555566667779999999999999999999999999999999999998 566777766654432
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
.. .. + . .+ .+++.+++.+...+...++++|+.+ ++||+++.++.+....+|.++++.+++.+.
T Consensus 86 ~~-------~~--~-~--~~----~r~l~G~~~a~~~pa~~a~i~~~~~-~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 86 LF-------GI--H-P--LL----AYGLVGIGAAAYSPAKYGILTELLP-GEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HH-------HH--H-H--HH----HHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11 1 1 12 2245678888888888999999986 579999999999888888888877776665
Q ss_pred HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC--C----CchHHHHHHHHhcHHHHHHHHHHHH
Q 021040 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG--N----SHARISWAYWFKKILYYQVALVYML 261 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (318)
+ ..|+..+.+.+....+ ..+..+.+||+++++++++ + .+.++.++.++|+|.++.......+
T Consensus 149 ~-----------~~~~~~~~i~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 216 (393)
T PRK11195 149 D-----------PHAEAALAVCALIYLL-AALFNLFIPRLGARRPGQSWNPIALLRDFFHACRVLWRDKLGRFSLAGTTL 216 (393)
T ss_pred H-----------HHHHHHHHHHHHHHHH-HHHHHhcCCCCcccccccCCCHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 3 1244444444333322 2334456777543221111 1 1123445778889887766555555
Q ss_pred HHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 262 TRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 262 ~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.+.........+|.|+++.+|.++.+.+.+.....+++++++++.+|+.||
T Consensus 217 ~~~~~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~ 267 (393)
T PRK11195 217 FWGAGATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTL 267 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 555555566677888888899998877777777778888889988888775
No 41
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.85 E-value=7e-19 Score=163.04 Aligned_cols=258 Identities=11% Similarity=0.040 Sum_probs=174.3
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
...+.++.+..........+.+|.+.+|.|.+.++.|++.+...+...+++|+.|+++||+||||. +..+.++.+++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~ 83 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHI-LLFLVALCVIGNA 83 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHH-HHHHHHHHHHHHH
Confidence 344555666666666677788888777789999999999999999999999999999999999988 5677777777755
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
... +.+ +.+...+. +++.+++.+...+...+.+.+..+ +++|+++.+....+..+|..+++.+++.
T Consensus 84 l~~-------~~~--~~~~l~~~----r~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~~~ 149 (382)
T PRK10091 84 MFT-------LSS--SYLMLAIG----RLVSGFPHGAFFGVGAIVLSKIIK-PGKVTAAVAGMVSGMTVANLLGIPLGTY 149 (382)
T ss_pred HHH-------HhC--cHHHHHHH----HHHHHhhhHHHHHHHHHHHHHhCC-hHHhhHHHHHHHHHHHHHHHHhccHHHH
Confidence 432 122 22322222 345666666655555666677664 5678888888777777776665544333
Q ss_pred HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (318)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (318)
+.. ..+||+.+.+.+++..+..+...+..||+++++ +.+.++.+ +.+|+++.+......++....
T Consensus 150 l~~----------~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 214 (382)
T PRK10091 150 LSQ----------EFSWRYTFLLIAVFNIAVLASIYFWVPDIRDEA----KGGLREQF-HFLRSPAPWLIFAATMFGNAG 214 (382)
T ss_pred Hhh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCCCccc----ccCHHHHH-HHhcChHHHHHHHHHHHHHHH
Confidence 321 247999998888776666655556677754321 11223333 456788777666555555555
Q ss_pred HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.....+|.+.|+++..|.++...+.+.....++.+++.++.+++.||+
T Consensus 215 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~ 262 (382)
T PRK10091 215 VFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRY 262 (382)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheecccc
Confidence 555667888888888898887666655555566666666766666664
No 42
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.85 E-value=1.3e-18 Score=162.26 Aligned_cols=257 Identities=14% Similarity=0.086 Sum_probs=162.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
+..+.............|.+.++.|.++.+.|++.+...+...+++++.|+++||+||||.+ ..+.++..++......
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~- 99 (406)
T PRK11551 22 LVALLEGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRIL-IVSVALFGLFSLATAQ- 99 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHH-
Confidence 34444444444455556666666799999999999999999999999999999999999984 5566666665443321
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
.+ +.....+ .+++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.++..+..
T Consensus 100 ------~~--~~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 164 (406)
T PRK11551 100 ------AW--DFPSLLV----ARLLTGVGLGGALPNLIALTSEAVG-PRLRGTAVSLMYCGVPFGGALASVIGVLAAG-- 164 (406)
T ss_pred ------hc--cHHHHHH----HHHHHHhhHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 11 2222222 2345677777666677788888875 5789999999888888887766554422211
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC-CCchHHHHHHHHhc---HHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG-NSHARISWAYWFKK---ILYYQVALVYMLTRLVV 266 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 266 (318)
..+|++.+++.+++.++..++...+.||+++++++++ +++..+..+..+++ +..+......++.....
T Consensus 165 --------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (406)
T PRK11551 165 --------DAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAPVLRALFGEGRATATLLLWISYFFTLIVL 236 (406)
T ss_pred --------ccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhhhHHHHhhhhhhhHHHHHHHHHHHHHHHH
Confidence 2468888877766655555555566788654322111 11111122233332 33444444455555556
Q ss_pred HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+....|+|.|+++ .|.+....+.......++++++.++.+++.||+
T Consensus 237 ~~~~~~~p~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~ 282 (406)
T PRK11551 237 YFLLNWLPSLLVG-QGLSRSQAGLVQIAFNIGGALGSLLIGALMDRL 282 (406)
T ss_pred HHHHHHHHHHHHh-CCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777889999887 588776555555555555566666666655554
No 43
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.85 E-value=2.1e-19 Score=164.83 Aligned_cols=242 Identities=16% Similarity=0.133 Sum_probs=169.1
Q ss_pred HHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040 48 LLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126 (318)
Q Consensus 48 ~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 126 (318)
.+++.+ .|+|..+.|++.++..+...+++++.|+++||+|||+. +..+.++.+++...... .+ +.+...
T Consensus 18 ~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~~--~~~~~~ 87 (379)
T TIGR00881 18 MPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVF-LPIGLILCAIVNLFFGF-------ST--SLWVMA 87 (379)
T ss_pred hHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeeh-hHHHHHHHHHHHHHHHH-------hh--hHHHHH
Confidence 344555 59999999999999999999999999999999999998 56677777776554431 11 122222
Q ss_pred HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCcccchhHHHHHH
Q 021040 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKTHADLENQYRWI 205 (318)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (318)
+..++.+++.+...+...+++.|..+ +++|++..++.+....+|..+++ .++..+.. ..+|++.
T Consensus 88 ----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~ 152 (379)
T TIGR00881 88 ----ALWALNGIFQGMGWPPCGRTVTKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAE----------LYSWHWV 152 (379)
T ss_pred ----HHHHHHHhhccccCCchHHHHHHhcC-HhhheeeEeehhccchhHHHHHHHHHHHHHHh----------cCCchhH
Confidence 22345667777666777788888875 57899999988888888877765 23222211 2468888
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccc---------cC-------C---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHH
Q 021040 206 AYSSIFIGCCFVGIFLSRTEEPRLKMG---------LR-------G---NSHARISWAYWFKKILYYQVALVYMLTRLVV 266 (318)
Q Consensus 206 ~~i~~~~~~l~~~~~~~~~~e~~~~~~---------~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
+++.+++.++..++..+..||++++++ ++ + ....+...++++|+|.++...+..++.....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (379)
T TIGR00881 153 FIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEMPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVR 232 (379)
T ss_pred HHHHHHHHHHHHHHHheeeCCCccccccCccccCcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 887777776666666666666432110 00 0 0112234677889999998888888888888
Q ss_pred HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY 314 (318)
Q Consensus 267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~ 314 (318)
.....+.|.|+.+..|.++...+.......++++++.++.+++.||.+
T Consensus 233 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~ 280 (379)
T TIGR00881 233 TGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLF 280 (379)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence 888999999999999998766665555556666677777777776643
No 44
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.85 E-value=4.5e-19 Score=167.28 Aligned_cols=248 Identities=13% Similarity=0.059 Sum_probs=164.0
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125 (318)
Q Consensus 46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 125 (318)
+..+++++.|+++++.|++.+++.+...+++++.|+++||+|||+. +..+.++.+++...... .+. . ..+....
T Consensus 48 ~~~p~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~~~--~-~~~~~~l 121 (438)
T TIGR00712 48 LAMPYLVEQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILSAAVMLLMGF--VPW--A-TSSIAIM 121 (438)
T ss_pred hhhHHHHHcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCcee-hHHHHHHHHHHHHHHhc--ccc--c-cchHHHH
Confidence 3456777779999999999999999999999999999999999987 56677776666543321 110 0 0111111
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 205 (318)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (318)
.+...+.+++.+...++....+.|..+ +++|+++.++.+.+..+|..+++.+.+..... ..+||+.
T Consensus 122 ----~~~~~l~g~~~g~~~~~~~~~i~~~~~-~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~---------~~~w~~~ 187 (438)
T TIGR00712 122 ----FVLLFLNGWFQGMGWPPCGRTMVHWWS-QSERGTIVSIWNCAHNIGGGIPPLLVLLGMAW---------FNDWHAA 187 (438)
T ss_pred ----HHHHHHHHHHhhcchHHHHHHHHHhcC-cccchhHHHHHHHHHHhHhHHHHHHHHHHHHH---------hhhhHHH
Confidence 122234566666655566667778775 57899999998888877776654443222211 2479998
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc---c-c---C-------C--C--CchHHH-HHHHHhcHHHHHHHHHHHHHHHHH
Q 021040 206 AYSSIFIGCCFVGIFLSRTEEPRLKM---G-L---R-------G--N--SHARIS-WAYWFKKILYYQVALVYMLTRLVV 266 (318)
Q Consensus 206 ~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~---~-------~--~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 266 (318)
+++.++++++..++..+.+||+++++ + + + + + .+.++. .+.++|||.++......++.....
T Consensus 188 f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T TIGR00712 188 LYFPAICAIIVALFAFAMMRDTPQSCGLPPIEEYRNDYPDDYNEKAEQELTAKEIFMQYVLPNKLLWYIAIANVFVYLLR 267 (438)
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHhcCCCCchhcccccccccccccccccchHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence 88888777776666666677754321 0 0 0 0 0 011111 234778999988877777777777
Q ss_pred HHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 267 NVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 267 ~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+...+|+|.|+++..|+++.+.+.......+.++++.++.+++.||.
T Consensus 268 ~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 314 (438)
T TIGR00712 268 YGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 314 (438)
T ss_pred HHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78889999999998898876655555445555555555555555554
No 45
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.85 E-value=2.7e-18 Score=162.56 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=209.1
Q ss_pred CchhhhhhcccchHHHHHH-HHHHHHHHHHHHHh----CCC--------------------------hhHHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITA-ACWFTYLLLFLTDI----GLS--------------------------PRGAAAVMLSGQI 70 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~----gls--------------------------~~~~g~i~~~~~i 70 (318)
++|+.+.|.+.+++|+... .+...++|+|++++ |.+ .+..+...+++.+
T Consensus 2 tr~~i~~W~lyd~ans~f~~~i~t~~~p~~~~~~a~~~g~~~~~~~~~c~~~~~~c~~~~~g~~~~~~s~~~~~~sis~l 81 (477)
T PF11700_consen 2 TRREIWSWALYDWANSPFATVIVTFFFPPYFQSLAREAGVLPGDPTQPCSDSDDDCVVPFFGSWIDTSSLWLYANSISGL 81 (477)
T ss_pred chhHHHHHHHhHhhcccchhhhHHHHHHHHHHHHHHhcccccccccCcccccCCccccccccccccHhHHHHHHHHHHHH
Confidence 4688899999999988643 34556788998874 211 3456788999999
Q ss_pred HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh
Q 021040 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM 150 (318)
Q Consensus 71 ~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (318)
..++..|+.|.++|+.|+||.++.+...+..++...+++ + .+ . .++... ++.++..+++....+.++++
T Consensus 82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~--v----~~-~-~~~~~~---~l~iia~v~~~~~~vfyna~ 150 (477)
T PF11700_consen 82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWF--V----SP-G-QWWLAL---VLFIIANVGYEASNVFYNAY 150 (477)
T ss_pred HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHH--h----Cc-c-hHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887777776666665543 1 11 1 222211 11234567888889999999
Q ss_pred ccccccCccc-------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040 151 VNCITLNSTS-------------------------RVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 205 (318)
Q Consensus 151 ~~~~~~~~~~-------------------------R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (318)
.+|+.+++++ |+++++.....+++|+++...+...++...+.. .+...+.|+.
T Consensus 151 LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~--~~~~~~~r~~ 228 (477)
T PF11700_consen 151 LPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST--ASNTWAIRVA 228 (477)
T ss_pred hHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc--cccchhhhHH
Confidence 9999876433 288999888888888887766554433322211 1123567888
Q ss_pred HHHHHHHHHHHHHHHHhccccccccc-ccCCC-------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040 206 AYSSIFIGCCFVGIFLSRTEEPRLKM-GLRGN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 277 (318)
Q Consensus 206 ~~i~~~~~~l~~~~~~~~~~e~~~~~-~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 277 (318)
+.+.++..++..+..++++||++.++ .++.+ ++.++.+|++.|+|+...+++++++..-+.+........|.
T Consensus 229 ~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~t~k~~~~~~~~~~fLia~~l~~dg~~ti~~~~~i~a 308 (477)
T PF11700_consen 229 FLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLWRTFKEIRKLRQLFLFLIAYFLYSDGVNTIISFAGIYA 308 (477)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999986522 11111 23345667788889999999999999999999999999999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040 278 INDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYSM 316 (318)
Q Consensus 278 ~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~ 316 (318)
.+++|++..++..+.++..+.+++++++.+++.||+=..
T Consensus 309 ~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k 347 (477)
T PF11700_consen 309 TEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPK 347 (477)
T ss_pred HHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 999999998888888888888999998888888887543
No 46
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.84 E-value=1.6e-18 Score=160.62 Aligned_cols=257 Identities=13% Similarity=0.002 Sum_probs=166.2
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
.++.+..-....+..+++|.|+++.|.|.+++|++.+++.+...+.+|++|.++||+|||+...........+......
T Consensus 10 ~~~~~~~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~- 88 (382)
T TIGR00902 10 ALGFFGYFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFS- 88 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH-
Confidence 3444555566678889999999999999999999999999999999999999999999854422111111111111111
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
. .. ++.+..++.+ .+.+.+.+...+...++..+. ++||++..+.......+|.++++.+++.+.+.
T Consensus 89 --~---~~--~~~~~l~~~~----~l~~~~~~~~~p~~~al~~~~---~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~ 154 (382)
T TIGR00902 89 --A---GA--HNAWLLFIAI----GLFALFFSAGMPIGDALANTW---QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGM 154 (382)
T ss_pred --H---hh--hhHHHHHHHH----HHHHHHHccchhHHHHHHHHH---HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11 1233222222 335555555555555555432 35677777877777778887776665555432
Q ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 021040 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (318)
.+|++.+.+.+++.. +.++.....|+.+++++ ++++.+..+++++++|||+++...+..++.+.....
T Consensus 155 ----------~g~~~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~ 223 (382)
T TIGR00902 155 ----------FDEQNILAILTAGLA-FMLIGFLIKPTIPPKDAIPEDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA 223 (382)
T ss_pred ----------cChhHHHHHHHHHHH-HHHHHHHcCCCCCCCccccccccccchhHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 467877766544422 22233333333222211 111122234578899999999999888888888888
Q ss_pred HHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 269 SQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 269 ~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
..++.|.|++| .|.+....+....+..++.+++..+.+|+.||.
T Consensus 224 ~~~~~~~~l~~-~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~ 267 (382)
T TIGR00902 224 YYGFSAIYWQA-AGISASATGLLWGIGVLAEIIIFAFSNKLFQNC 267 (382)
T ss_pred HHHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhC
Confidence 89999999987 788887777666666677777788888887775
No 47
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.84 E-value=1.6e-18 Score=161.26 Aligned_cols=240 Identities=11% Similarity=-0.054 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
..+.+|...+|+|+|.++.|++.+.+.+...+++|+.|+++||+||||+ +..+..+++++...... .++ .
T Consensus 28 ~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~-l~~~~~l~~~~~~~~~~-------a~~--~ 97 (393)
T PRK09705 28 VGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS-VAISLLLIAVGALMREL-------YPQ--S 97 (393)
T ss_pred cchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH-HHHHHHHHHHHHHHHHH-------Ccc--h
Confidence 4466677777789999999999999999999999999999999999999 57788888888764431 222 2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (318)
...+ +.+++.+++.+...+...+++.+..+ ++|+++.+..+.+...|..+++.+++.+.+.. .+|
T Consensus 98 ~~ll----~~r~l~Gig~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~---------~~w 162 (393)
T PRK09705 98 ALLL----SSALLGGVGIGIIQAVMPSVIKRRFQ--QRTPLVMGLWSAALMGGGGLGAAITPWLVQHS---------ETW 162 (393)
T ss_pred HHHH----HHHHHHHhHHHHHhhhhhHHHHHHcc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhc---------CCH
Confidence 2222 22345677777766666677777653 67899999988888888888777665444321 257
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g 282 (318)
|+.+.+.++..++.........+++++++ ++++. ..++.+|+|+.+.....+.+....+....+|+|.|+++ .|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~lp~~l~~-~g 236 (393)
T PRK09705 163 YQTLAWWALPAVVALFAWWWQSAREVASS-HKTTT----TPVRVVFTPRAWTLGVYFGLINGGYASLIAWLPAFYIE-IG 236 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCccc-cCCCc----CCcccccCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 87765555444433322222222222111 11111 12445678888877777777777778888999999987 68
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 283 MGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+....+....+..++++++..+.++++||.
T Consensus 237 ~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~ 267 (393)
T PRK09705 237 ASAQYSGSLLALMTLGQAAGALLMPAMARHQ 267 (393)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8876666555566667777777777777764
No 48
>PRK10504 putative transporter; Provisional
Probab=99.84 E-value=2.5e-18 Score=163.60 Aligned_cols=265 Identities=15% Similarity=0.076 Sum_probs=178.5
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i 102 (318)
+++.+...++.+.........++.+|.+.++.|.++.+.|++.+.+.+...++.|+.|+++||+||||.+ ..+.++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~-~~~~~~~~~ 87 (471)
T PRK10504 9 RWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIF-FTAIVLFTL 87 (471)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHH
Confidence 3445556666677677777788888998888899999999999999999999999999999999999984 566666666
Q ss_pred HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
+..... +.+ +..... +.+++.+++.+...+...+.+.|..+ +++|+++.+..+...++|..+++.+
T Consensus 88 ~~~~~~-------~~~--~~~~l~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~ 153 (471)
T PRK10504 88 GSLFCA-------LSG--TLNELL----LARVLQGVGGAMMVPVGRLTVMKIVP-REQYMAAMTFVTLPGQVGPLLGPAL 153 (471)
T ss_pred HHHHHH-------HhC--CHHHHH----HHHHHHHhhhHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 554332 111 122222 22345677777766666777778775 5788999888888878888777666
Q ss_pred HHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC---------------------CCC----
Q 021040 183 AFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------------------GNS---- 237 (318)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~---------------------~~~---- 237 (318)
++.+.+ ..+|+|.+.+...+..+..+......||.+.++++. ++.
T Consensus 154 ~g~l~~----------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (471)
T PRK10504 154 GGLLVE----------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMATLTLALDGSKGLGLS 223 (471)
T ss_pred HHHHHh----------hccHHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcc
Confidence 555543 247999988776666666555555555432211100 000
Q ss_pred --------------------------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040 238 --------------------------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (318)
Q Consensus 238 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~ 291 (318)
+...+ .+++|||+++..+...++.+........+.|.|+++..|.++...+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 302 (471)
T PRK10504 224 PLAIAGLVAVGVVALLLYLLHARNNNRALFS-LKLFRTRTFSLGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLM 302 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCccC-HHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 00011 247899999988888888888877777888999998888887555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 021040 292 PAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 292 ~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.....++.+++..+.+|+.||+
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~r~ 324 (471)
T PRK10504 303 MIPMVLGSMGMKRIVVQVVNRF 324 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444555545555555554
No 49
>PRK10054 putative transporter; Provisional
Probab=99.84 E-value=1.4e-18 Score=161.86 Aligned_cols=229 Identities=10% Similarity=0.044 Sum_probs=154.9
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHH
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~ 104 (318)
.....+..+.....+....+++++|+++. |+++.++|++.++..+...+.+|+.|+++||+||||. +.++.+..+++.
T Consensus 9 ~~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~-~~~~~~~~~~~~ 87 (395)
T PRK10054 9 TSALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRY-MLLAITAFASGF 87 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchh-HHHHHHHHHHHH
Confidence 34455566667777888889999999875 9999999999999999999999999999999999987 566776666665
Q ss_pred HHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (318)
.... +.+ +.+...+. ..+.+.+.+.......++.+|..+ +++|+++.++.+...++|.++++.+++
T Consensus 88 ~~~~-------~~~--~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~lg~~igp~l~~ 153 (395)
T PRK10054 88 IAIP-------LVN--NVTLVVLF----FALINCAYSVFSTVLKAWFADNLS-STSKTKIFSLNYTMLNIGWTVGPPLGT 153 (395)
T ss_pred HHHH-------HHh--HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcC-HhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4332 111 12211211 123444445555556777788875 568999999998888888888776655
Q ss_pred HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 021040 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL 264 (318)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
.+.. .+|++.+.+.+++.++..+...+.+||++++++++ +++ ....++++|||+++......++..+
T Consensus 154 ~l~~-----------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ 220 (395)
T PRK10054 154 LLVM-----------QSINLPFWLAAICSAFPLVFIQIWVQRSEKAIATE-TGS-VWSPSVLLQDKALLWFTCSGFLASF 220 (395)
T ss_pred HHHH-----------hccCcHHHHHHHHHHHHHHHHHHHHhccccccccc-hhh-hhhhhhhccCceehHHHHHHHHHHH
Confidence 4431 35777777666665555444445455543222111 111 1224778899999888887777777
Q ss_pred HHHHHHHHhHHhhhhccc
Q 021040 265 VVNVSQAYLAFYVINDLR 282 (318)
Q Consensus 265 ~~~~~~~~~~~yl~~~~g 282 (318)
.......+.+.|+.+..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~ 238 (395)
T PRK10054 221 VSGAFASCISQYVMVVAD 238 (395)
T ss_pred HHHHhhhhHHHHHHHhcc
Confidence 766666677777765433
No 50
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.83 E-value=1.4e-18 Score=162.89 Aligned_cols=259 Identities=9% Similarity=-0.048 Sum_probs=173.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 32 GHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
+.+.+.+...+....+|.+.++.+.++.+.|++.+...+...+.+++.|.++||+||||. +..+.++.+++...+..
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~-l~~~~~~~~~~~~~~~~-- 101 (417)
T PRK10489 25 ARFISIFGLGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKL-ILLARGTCGLGFIGLAL-- 101 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceE-EEehHHHHHHHHHHHHH--
Confidence 345555666667777888888887899999999999999999999999999999999998 45566655555433210
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
. .+....+.+... +..++.+++.+...++..+.++|..+ +++|+++.+..+....+|..+++.+++.+..
T Consensus 102 -~-~~~~~~~~~~l~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~--- 171 (417)
T PRK10489 102 -N-AFLPEPSLLAIY----LLGLWDGFFGSLGVTALLAATPALVG-RENLMQAGAITMLTVRLGSVISPALGGLLIA--- 171 (417)
T ss_pred -H-HHcCCCcHHHHH----HHHHHHHHHHHHHHHHHhhhhhhccC-HHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH---
Confidence 0 001111222212 22234556666666666778888875 5788999998888888888887777665553
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
..+|+|.+++.++..++..+ .....||++++++++ +.++.++.++.++|+|.++...+...+... ....
T Consensus 172 -------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 242 (417)
T PRK10489 172 -------AGGVAWNYGLAAAGTFITLL-PLLRLPALPPPPQPREHPLRSLLAGFRFLLASPVVGGIALLGGLLTM-ASAV 242 (417)
T ss_pred -------HHhhHHHHHHHHHHHHHHHH-HHHhCCCCCCCCcccccchHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHhH
Confidence 24678887766655544433 334556643322111 112334567778889887766555444333 3456
Q ss_pred HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
..++|.|.++..|.+....+.+.....++++++.++.+++.||
T Consensus 243 ~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~ 285 (417)
T PRK10489 243 RVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHS 285 (417)
T ss_pred HHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7789999999899988777766666677888888888888876
No 51
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=99.83 E-value=3.3e-19 Score=169.43 Aligned_cols=239 Identities=12% Similarity=0.114 Sum_probs=169.1
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHH
Q 021040 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (318)
Q Consensus 53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (318)
|.++++.+.|++.+.+.+...+++++.|+++||+|||+. +..+.++.+++..+... ....+... +.+.
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-l~~~~~~~~~~~~~~~~-------~~~~~~~~----l~~~ 137 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWS-IGIGMFLSSVISIVIPW-------AAGGGIAL----VVFC 137 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchh-hHHHHHHHHHHHHHHHH-------HHHcCchH----HHHH
Confidence 347899999999999999999999999999999999998 56676666665443210 00111121 2233
Q ss_pred HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHH
Q 021040 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (318)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 212 (318)
+++.|++.+...+....+++|..+ +++|+++.++.+.+..+|.++++.+.+.+... ..+|++.+++.+++
T Consensus 138 r~~~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~---------~~gw~~~f~i~~~~ 207 (465)
T TIGR00894 138 RVIQGLAQGSVSPATHKIIVKWAP-PKERSRLLGMSTSGFQLGTFIFLPISGWLCES---------WGGWPMIFYVFGIV 207 (465)
T ss_pred HHHHHHhcccchhhHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cCCCCeehhhhhHH
Confidence 356778888777777788888875 58999999999988888887776655443321 02789888888887
Q ss_pred HHHHHHHHHhccccccccccc-------------CC---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHh
Q 021040 213 GCCFVGIFLSRTEEPRLKMGL-------------RG---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY 276 (318)
Q Consensus 213 ~~l~~~~~~~~~~e~~~~~~~-------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 276 (318)
+++..++.+...+|+++.+++ ++ +.+.+..+++++++|+++...+.+++.....+...+|+|.|
T Consensus 208 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 287 (465)
T TIGR00894 208 GCAWSLLWFVFPADDPSIHPCISKFEKKYINSSLQGQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTF 287 (465)
T ss_pred HHHHHHHHHHHhcCCcccCCCCCHHHHHHHHhhcccccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766666666654322110 00 01112358899999999999999999998888999999999
Q ss_pred hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 277 VINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 277 l~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+++.+|.+....+....+..+++++++.+.++++||+
T Consensus 288 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~ 324 (465)
T TIGR00894 288 ISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFL 324 (465)
T ss_pred HHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876666555555555566666666555554
No 52
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.83 E-value=1.3e-18 Score=165.78 Aligned_cols=260 Identities=15% Similarity=0.072 Sum_probs=176.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
...++.+.......+....+|.+.++.|.+..+.+++.+.+.+...++.|+.|+++||+||||. +..+.++.+++....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~ 84 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRL-FLISTFAFTLGSLLC 84 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHH-HHHHHHHHHHHHHHH
Confidence 3444555556666667777777777789999999999999999999999999999999999998 566777777765543
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
. ..+ +..... +.+++.+++.+...+...+++.|..+ +++|+++.++.+....+|..+++.+++.+.
T Consensus 85 ~-------~~~--~~~~l~----~~~~~~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 150 (485)
T TIGR00711 85 G-------VAP--NLELMI----IFRVIQGFGGGPLIPLSFSTLLNIYP-PEKRGRAMAIWGLTVLVAPALGPTLGGWII 150 (485)
T ss_pred h-------CcC--CHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHhhhhhccHhHhc
Confidence 2 122 222222 22345677777777777888889875 578999999988888888777665554433
Q ss_pred HhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC-----------------------CCC---chH-
Q 021040 188 SVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR-----------------------GNS---HAR- 240 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~-----------------------~~~---~~~- 240 (318)
. ..+|+|.+++.+.++++..++..+..||++++++++ ++. +..
T Consensus 151 ~----------~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (485)
T TIGR00711 151 E----------NYHWRWIFLINVPIGIIVVVVAFFILPRDKPAASENFDFLGLLLLSVGLGSLLYGLSEGPERGWFDSNE 220 (485)
T ss_pred c----------CcCceehhhhhhHHHHHHHHHHHHHcCCccccccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCCCCchH
Confidence 2 257899888877776666666656666643221100 000 000
Q ss_pred -----------------------H--HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHH
Q 021040 241 -----------------------I--SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAII 295 (318)
Q Consensus 241 -----------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~ 295 (318)
+ .-.+++|+|+++..++..++..+.......++|.|+++..|.++.+.+......
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~ 300 (485)
T TIGR00711 221 ILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPV 300 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0 012467888888888888888888888888999999999999876555444444
Q ss_pred HHHHHHHHHHHHHHHHh
Q 021040 296 YICSFIVSILLQVISLK 312 (318)
Q Consensus 296 ~v~~~i~~~~~~~i~~~ 312 (318)
.++.++++++.+++.||
T Consensus 301 ~~~~~~~~~~~g~l~~r 317 (485)
T TIGR00711 301 GLAPMLSSPIAGRMGDK 317 (485)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 44444444444444444
No 53
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.83 E-value=4.8e-18 Score=157.45 Aligned_cols=250 Identities=10% Similarity=0.015 Sum_probs=160.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH---HHHHHHHHHHHHHHHhCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW---HGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~---l~~g~~~~~i~~~~~~~~ 110 (318)
++......+..+++|.|++|.|.|..++|++.+++.+...+++|+.|.++||+|||+.. +.++.....+. ...
T Consensus 14 ~~~~~~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~--~~~-- 89 (382)
T PRK11128 14 FGYFFAYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVA--FWF-- 89 (382)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHH--HHH--
Confidence 33445567788999999999999999999999999999999999999999999995321 22222211111 111
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
. .++.+..++ ...+.+++.+...+...++..+. +++|++..+.......+|..+++.+++.+.+.
T Consensus 90 ------~-~~~~~~l~i----~~~l~g~~~~~~~~~~~a~~~~~---~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~- 154 (382)
T PRK11128 90 ------G-AHSFWLLFV----AIGLFNLFFSPLVPLTDALANTW---QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSW- 154 (382)
T ss_pred ------h-cccHHHHHH----HHHHHHHHHcccccHHHHHHHHH---HhhccCCcchHHHHHHHHHHHHHHHHHHHHHH-
Confidence 1 112332222 22345555555555555666554 24566666666677778877776666555432
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-CCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-RGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
.+|+..+++.++..++. .+..+..||+++++++ +++++..+++++++|||+++......++........
T Consensus 155 ---------~g~~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~ 224 (382)
T PRK11128 155 ---------FGEQAILWILTAGVASM-LLGQLLRPTIMPQGESRQQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAAY 224 (382)
T ss_pred ---------cChhHHHHHHHHHHHHH-HHHHHccCCCCCccccccccccccchHHHHHcChhHHHHHHHHHHHHHHhHhH
Confidence 36787776655443333 3333444554322111 111122456889999999998888888877777778
Q ss_pred HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+++|.|++| .|.+....+..-.+..++.++..++.+|+.||.
T Consensus 225 ~~~~~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~ 267 (382)
T PRK11128 225 YGFSAIYWQA-AGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRW 267 (382)
T ss_pred HHHHHHHHHH-CCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 8899999966 788876666655555567777777777777763
No 54
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.83 E-value=3.6e-18 Score=158.97 Aligned_cols=266 Identities=12% Similarity=0.078 Sum_probs=153.9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~ 106 (318)
.+....+.....+....++++.|+++. |+++.++|++.++..+...+.+|+.|+++||+||||.+ ..+....+++...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~~ 84 (396)
T TIGR00882 6 MFGLFFFLYFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHL-LWIISGLLVLFAP 84 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHH
Confidence 334444555666777889999999985 99999999999999999999999999999999999985 4444443333221
Q ss_pred HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
.+. .. ..+... ........+..++.+++.+...+...++..|.. ++++...+......++|.++++.+++.+
T Consensus 85 ~~~--~~--~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~g~~~g~~~~g~l 156 (396)
T TIGR00882 85 FFI--YV--FGPLLQ-SNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS---RNSNFEYGKARMFGCVGWALCASIAGIL 156 (396)
T ss_pred HHH--HH--hhhHHH-HHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh---hhcccccchhhhhcccHHHHHHHHHhhh
Confidence 110 00 000000 001111122223345555555555555555532 2233344444455567766665554332
Q ss_pred HHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc------CCCCchHHHHHHHHhcHHHHHHHHHHH
Q 021040 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL------RGNSHARISWAYWFKKILYYQVALVYM 260 (318)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (318)
. ..+|++.+++.++++++..++.+...+|+++++++ +++++..++.++++|||+++..+...+
T Consensus 157 ~-----------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~ 225 (396)
T TIGR00882 157 F-----------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSSATVANALGANASAFSLKLALELFRQRKFWMFVLYVV 225 (396)
T ss_pred h-----------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchhhhhhcccccccCCCCHHHHHHHHcCCcHHHHHHHHH
Confidence 2 13688888877777776665554444554322110 111223356789999999887776666
Q ss_pred HHHHHHHHHHHHhHHhhhhccc---cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 261 LTRLVVNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 261 ~~~~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+..........+++.|+++..+ .+....+....+..+...++....+++.||.
T Consensus 226 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~ 281 (396)
T TIGR00882 226 GVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRI 281 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666678888887653 3333334333333344444444444444443
No 55
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.83 E-value=1.6e-17 Score=155.43 Aligned_cols=266 Identities=11% Similarity=0.002 Sum_probs=174.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~ 113 (318)
+...+...+..+.+|.+.++.|+|+.+.|++.+...+...+++++.|++.||+||||. +..+.++++++...... .+
T Consensus 13 ~~~G~~~~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~-~~~g~~l~~~g~~l~~~--~~ 89 (410)
T TIGR00885 13 ALWGFANDITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAG-ILLGLFLYALGAFLFWP--AA 89 (410)
T ss_pred HHHHHHHHhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHHHHHHHHHHHHHHH--HH
Confidence 3334445555666666655669999999999999999999999999999999999998 67788887777654321 00
Q ss_pred CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (318)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (318)
...+... +++..++.++|.+..+++.++++.+..+ +++|++..+..+...++|..+++.++..+.......
T Consensus 90 ----~~~~~~~----~l~~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~ 160 (410)
T TIGR00885 90 ----EIMNYTL----FLVGLFILTAGLGFLETAANPYILVMGP-ESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPH 160 (410)
T ss_pred ----hhccHHH----HHHHHHHHHhhHHHHHhhhhHHHHHHCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 0112221 2223346778888888888888877764 467888889989999999998888876665321000
Q ss_pred ccc----------------chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHH
Q 021040 194 THA----------------DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVAL 257 (318)
Q Consensus 194 ~~~----------------~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (318)
... ....+||+.+++.+++.++..++.. +.|+++.+++++++.+..++.++++|+|.++..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (410)
T TIGR00885 161 QSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM-LTKMPALNHSDAKQISFSASLSRLARIRHYREGVI 239 (410)
T ss_pred chhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCccccccccchhhHHHHHhChhHHHHHH
Confidence 000 0124689988877776665544332 23333211111122233445678899999988887
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcc-ccccc----hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 258 VYMLTRLVVNVSQAYLAFYVINDL-RMGQS----AKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~yl~~~~-g~~~~----~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
..++.........+|++.|.++.. +.+.. .....-....++-++++.+.||++++
T Consensus 240 ~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~ 299 (410)
T TIGR00885 240 AQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAH 299 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHH
Confidence 777777777778899999997643 33322 12222234456778888888887775
No 56
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.83 E-value=1.2e-17 Score=155.65 Aligned_cols=266 Identities=9% Similarity=0.002 Sum_probs=164.5
Q ss_pred CCchhh-hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhH-----HHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040 21 VGRWSV-LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRG-----AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (318)
Q Consensus 21 ~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~-----~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~ 94 (318)
.+|.+. ....++.+..........+++|.|+++.|++..+ .|++.++..+...+.+|+.|+++||+||||. +.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~ 88 (408)
T PRK09874 10 INWKRNLTVAWLGCFLTGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM-LL 88 (408)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH-HH
Confidence 334443 3334566777777778889999999988887544 5899999999999999999999999999988 45
Q ss_pred HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040 95 AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (318)
Q Consensus 95 ~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 174 (318)
.+.++.+++...... . .+.+...+.+ .+.+++.+. .....+.+.+..+ +++|+++.+..+....+
T Consensus 89 ~~~~~~~~~~~~~~~-------~--~~~~~~~~~~----~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 153 (408)
T PRK09874 89 RSALGMGIVMVLMGL-------A--QNIWQFLILR----ALLGLLGGF-VPNANALIATQVP-RNKSGWALGTLSTGGVS 153 (408)
T ss_pred HHHHHHHHHHHHHHH-------H--hhHHHHHHHH----HHHHHhhhh-HHhHHHHHHHhcC-HhhhhHHHHHHHHHHHH
Confidence 677666666543321 1 1222222222 234444333 3344566667664 57889999988888888
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHH
Q 021040 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQ 254 (318)
Q Consensus 175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (318)
|..+++.+++.+.+ ..+|++.+++.+++.++..+...+..||++++++++++.+ .++..+.+|+|+++.
T Consensus 154 g~~~~~~~~~~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 222 (408)
T PRK09874 154 GALLGPLAGGLLAD----------SYGLRPVFFITASVLFLCFLVTLFCIRENFQPVSKKEMLH-MREVVTSLKNPKLVL 222 (408)
T ss_pred HHHHHHHHHHHHHH----------HhCHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhH-HHHHHHhCcCCchHH
Confidence 87777666554432 2468888888777776666666666777543322111112 223345567777654
Q ss_pred H-HHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 255 V-ALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 255 ~-~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
. ....++..........+++.|..+..+.... ..+.+..+..++++++....++++||+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~ 285 (408)
T PRK09874 223 SLFVTTLIIQVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRI 285 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3 3333444445555667788888876443221 122233333455556665566666654
No 57
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.82 E-value=8.9e-18 Score=157.57 Aligned_cols=263 Identities=12% Similarity=0.065 Sum_probs=154.9
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
++..+...++.+......... .+..+.+. +.|+|+.+.+++.++..+...+++|+.|+++||+|||+. +..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~-l~~~~~~~~ 94 (426)
T PRK12307 17 KNALFSAWLGYVFDGFDFMLI-FYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPL-MMWSIVAYS 94 (426)
T ss_pred HHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHH
Confidence 333333334444333333333 33444444 469999999999999999999999999999999999988 567777777
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++...... .+ +.+... +.+.+.+++.+...+...+++.|..+ +++|+++.++.+.+..+|.++++.
T Consensus 95 ~~~~~~~~-------~~--~~~~l~----~~r~l~G~g~g~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~lg~~~~~~ 160 (426)
T PRK12307 95 VGTGLSGL-------AS--GVIMLT----LSRFIVGMGMAGEYACASTYAVESWP-KHLKSKASAFLVSGFGIGNIIAAY 160 (426)
T ss_pred HHHHHHHH-------Hh--HHHHHH----HHHHHHHHHHhhHHHHHHHHHHHhCC-HhHhhHhhhHHHHHHhHHHHHHHH
Confidence 76543321 11 122222 22345677777666666778888875 578999999988887888776654
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----cCC--CC----chHHHHHHHHhcHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LRG--NS----HARISWAYWFKKIL 251 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~~--~~----~~~~~~~~~~~~~~ 251 (318)
+.+.+.. ..+|++.+++.++. .+..+......||+++.++ +++ ++ .....+++++|+|.
T Consensus 161 l~~~l~~----------~~~w~~~f~i~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (426)
T PRK12307 161 FMPSFAE----------AYGWRAAFFVGLLP-VLLVIYIRARAPESKEWEEAKLSGKGKHSQSAWSVFSLSMKGLFNRAQ 229 (426)
T ss_pred HHHHHcc----------cCCHHHHHHHHHHH-HHHHHHHHHHCCCChHHHHhhhhccccccccchhhhhHHHHHHHhhch
Confidence 4333221 24789888764332 2222222223455422110 000 00 01235778888888
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 252 YYQVALVYMLTR---LVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 252 ~~~~~~~~~~~~---~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++.......... ........++|.|+++. |.++...+....+..++.+++.++.+++.||+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~ 293 (426)
T PRK12307 230 FPLTLCVFIVLFSIFGANWPIFGLLPTYLAGE-GFDTGVVSNLMTAAAFGTVLGNIVWGLCADRI 293 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 765443332222 22234567889998874 77765544444444445555555555555543
No 58
>PRK03699 putative transporter; Provisional
Probab=99.82 E-value=1.4e-17 Score=155.05 Aligned_cols=251 Identities=9% Similarity=-0.008 Sum_probs=154.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~ 113 (318)
+............++.+.++.|+|.++.|++.+...+...+++++.|+++||+||||. +..+.++.+++......
T Consensus 17 ~~~~~~~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~-~~~~~~~~~i~~~l~~~---- 91 (394)
T PRK03699 17 ALTGALVIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQ-LIFGFALMILAVAGLMF---- 91 (394)
T ss_pred HHHHHHHHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHHHHHH----
Confidence 3333444445556666666679999999999999999999999999999999999998 56677776666553321
Q ss_pred CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 021040 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK 193 (318)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~ 193 (318)
.+ +..... +.+.+.+++.+...+...+.+.|..+ +++|++..+..+....+|..+++.+.+.+...
T Consensus 92 ---~~--~~~~~~----~~~~l~G~~~g~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---- 157 (394)
T PRK03699 92 ---SH--SLALFS----IAMFVLGVVSGITMSIGTFLITHVYE-GKQRGSRLLFTDSFFSMAGMIFPIIAAYLLAR---- 157 (394)
T ss_pred ---cc--hHHHHH----HHHHHHHHhhHhhccchhHHhhhhcc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----
Confidence 11 122222 22234556655555555667778774 46788888777666666666555444333321
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhc-ccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 194 THADLENQYRWIAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (318)
..+||+.+.+.+++.++..++.+.. .||.+++ +++++++ ..++ ..+|.++...+..++..........|
T Consensus 158 -----~~gw~~~f~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (394)
T PRK03699 158 -----SIEWYWVYACIGLVYVAIFILTLFSEFPALGKH-APKADKP---VAKE-KWGIGVLFLAIAALLYILAQLTFISW 227 (394)
T ss_pred -----cccHHHHHHHHHHHHHHHHHHHHhcCCcccccc-CccccCc---cccc-cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 2479999887776665554433321 1221111 1111111 1111 23566666666667776777788899
Q ss_pred hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+|.|+++++|++..+.+.+.....++..++..+.++++||+
T Consensus 228 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~ 268 (394)
T PRK03699 228 VPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFF 268 (394)
T ss_pred HHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999876555544444445555555555555553
No 59
>PRK11043 putative transporter; Provisional
Probab=99.82 E-value=4.1e-17 Score=152.04 Aligned_cols=244 Identities=11% Similarity=0.056 Sum_probs=154.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
....+..+.++.+.++.|.+++++|++.++..+...+++++.|+++||+||||. +..+..+.+++...... .
T Consensus 20 ~~~~~~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~~-------~ 91 (401)
T PRK11043 20 LATDMYLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPV-LLAGLSLFALGSLGMLW-------V 91 (401)
T ss_pred HHHHHHHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHH-HHHHHHHHHHHHHHHHH-------h
Confidence 444455555555566679999999999999999999999999999999999998 56677666666543321 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (318)
+ +.....+. +.+.+++.+...+...+++.|..+ +++|++..+..+....++..+++.+++.+.+
T Consensus 92 ~--~~~~l~~~----~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~--------- 155 (401)
T PRK11043 92 E--SAAQLLVL----RFVQAVGVCSAAVIWQALVIDRYP-AQKANRVFATIMPLVALSPALAPLLGAWLLN--------- 155 (401)
T ss_pred c--CHHHHHHH----HHHHHhhhHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 1 22222222 234555555555555677778765 4567777666666666666666555544432
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040 198 LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 277 (318)
Q Consensus 198 ~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 277 (318)
..+|++.+++.+++.++..++... .+|+++++ ++++.+.++++++|+|+++.......+.........++.|.++
T Consensus 156 -~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 230 (401)
T PRK11043 156 -HFGWQAIFATLFAITLLLILPTLR-LKPSKKAR---KQSQDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTGSPFIL 230 (401)
T ss_pred -cCChHHHHHHHHHHHHHHHHHHHH-cCCCCCcc---ccchHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 246888887777666665554433 44433221 1122345788899999988776666666666666777889888
Q ss_pred hhccccccchhhHHHHH----HHHHHHHHHHHHHHHHH
Q 021040 278 INDLRMGQSAKALVPAI----IYICSFIVSILLQVISL 311 (318)
Q Consensus 278 ~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~ 311 (318)
++ .|.+....+..-.. ..+++++++.+.+|+++
T Consensus 231 ~~-~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~ 267 (401)
T PRK11043 231 EQ-MGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGG 267 (401)
T ss_pred HH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 65 68877555443322 23344444555555543
No 60
>TIGR00895 2A0115 benzoate transport.
Probab=99.81 E-value=5.5e-18 Score=156.54 Aligned_cols=248 Identities=15% Similarity=0.077 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~ 119 (318)
......+.|.+.++.|.++.+.|++.++..+...+++++.|+++||+|||+. +..+.++.+++...... .+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~-------~~- 103 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRV-LLWSILLFSVFTLLCAL-------AT- 103 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------cc-
Confidence 3334444455555569999999999999999999999999999999999887 56677666666554331 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (318)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (318)
+..... +..++.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.+++.+.. .
T Consensus 104 -~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~----------~ 167 (398)
T TIGR00895 104 -NVTQLL----ILRFLAGLGLGGLMPNLNALVSEYAP-KRFRGTAVGLMFCGYPIGAAVGGFLAGWLIP----------V 167 (398)
T ss_pred -chHHHH----HHHHHHhcccccchhhHHHHHHHHcC-HHhhchhHhhHhhHHHHHHHHHHHHHHHHhh----------c
Confidence 122222 22245667777777777888888875 5789999999888888888877666544432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccc---c--c---------------------cC--CC-CchHHHHHHHHhc-
Q 021040 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---M--G---------------------LR--GN-SHARISWAYWFKK- 249 (318)
Q Consensus 200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~---~--~---------------------~~--~~-~~~~~~~~~~~~~- 249 (318)
.+|++.+++.+++..+..++.....||+++. + + ++ ++ +..++.++.++++
T Consensus 168 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (398)
T TIGR00895 168 FGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGK 247 (398)
T ss_pred ccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhcCHHHHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcch
Confidence 4677777766655555555555666664321 0 0 00 00 1111223333333
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 250 --ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 250 --~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+..+......++..........++| ++.+..|.+....+.......++.+++.++.+++.||+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 312 (398)
T TIGR00895 248 TARITVLLWLLYFMLLVGVYFLTNWLP-KLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRL 312 (398)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444555555666667777888 55666788776555444444445555555555555443
No 61
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.81 E-value=1.2e-17 Score=154.70 Aligned_cols=255 Identities=14% Similarity=0.104 Sum_probs=157.8
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
.+....+.+...+......+++|.+.++.|.|..++|++.+.+.+...+++|+.|+++||+||||. +..+.++.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~-~~~~~~~~~~~~~ 86 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRS-YYLASLIFAAGCA 86 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 344556666777788888899999999999999999999999999999999999999999999998 4567777776654
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
... +.+ +.+...+ .+++.+++.+...+...+.+.+..+ +++|++..+..+.+.++|..+++.+++.
T Consensus 87 ~~~-------~~~--~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 152 (381)
T PRK03633 87 GLG-------LMV--GFWSWLA----WRFVAGIGCAMIWVVVESALMCSGT-SRNRGRLLAAYMMVYYLGTVLGQLLVSK 152 (381)
T ss_pred HHH-------Hhc--cHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 332 111 2222222 2345667766665555555556654 4689999999888888888776665544
Q ss_pred HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHH
Q 021040 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLV 265 (318)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (318)
+..... ....|.. +........+.+...+|++ ++++ ..++.++.+|||.++......++....
T Consensus 153 l~~~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (381)
T PRK03633 153 VSTELM--------SVLPWVT---GLVLAAILPLLFTRILNQQ--AENH----DSTSIWPMLKLRQARLGVNGCIISGIV 215 (381)
T ss_pred cccccc--------chHHHHH---HHHHHHHHHHHHhcccCCC--CCCC----CCCCHHHHHHhcchHHHHHHHHHHHHH
Confidence 332110 1112221 1111111111112222221 1111 112346678898887655444444455
Q ss_pred HHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 266 VNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 266 ~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.....+++|.|+++ .|.+....+..-....++++++....+++.||.
T Consensus 216 ~~~~~~~lp~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 262 (381)
T PRK03633 216 LGSLYGLMPLYLNH-QGMSDASIGFWMALLVSAGILGQWPIGRLADRF 262 (381)
T ss_pred HHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHc
Confidence 55666788999987 477765555444444455555555555555553
No 62
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.81 E-value=5.4e-18 Score=159.05 Aligned_cols=267 Identities=11% Similarity=0.060 Sum_probs=146.2
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~ 103 (318)
+.+...+..+.....++...++++.|+++ .|+|+.++|++.++..+...+++|+.|.++||+||||.. .++....++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~-~~~~~~~~~~ 89 (420)
T PRK09528 11 NYWIFSLFFFFFFFIWSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHL-LWIISGLLVL 89 (420)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHH
Confidence 33334445555566677788999999998 499999999999999999999999999999999999984 4444333333
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
....+. .. ..+.. .........+..+..+.+..........+..+. .++|+...+..+...++|..+++.++
T Consensus 90 ~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~g~~~~~~~~g~~i~~~~~ 161 (420)
T PRK09528 90 FGPFFI--YV--FAPLL-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIERV---SRRSGFEYGRARMWGSLGWALCAFIA 161 (420)
T ss_pred HHHHHH--HH--HHHHH-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHHH---HhhccccchhhHHhhhHHHHHHHHHH
Confidence 211110 00 00000 000000011101111222222111122222111 23455566666666677777766555
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c-c--CCCCchHHHHHHHHhcHHHHHHHH
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-L--RGNSHARISWAYWFKKILYYQVAL 257 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 257 (318)
+.+.. .+|++.+++.+++++++.++.++..+|+++++ + + ++++...+..++.+|||+++.+.+
T Consensus 162 g~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~l 230 (420)
T PRK09528 162 GILFN-----------INPQINFWLGSGSALILLVLLFFAKPDAPSTAKVANALGANASAVSLKDALALLKLPKFWFLVL 230 (420)
T ss_pred HHHHh-----------cCchHhHHHHHHHHHHHHHHHhcccccccchhhhccchhcccccccHHHHHHHccCCCeEeehH
Confidence 44431 35777887777666666555544444443221 1 1 112223455667889998877666
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhcc---ccccchhhHHHHHHH----HHHHHHHHHHHHHHH
Q 021040 258 VYMLTRLVVNVSQAYLAFYVINDL---RMGQSAKALVPAIIY----ICSFIVSILLQVISL 311 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~yl~~~~---g~~~~~~~~~~~~~~----v~~~i~~~~~~~i~~ 311 (318)
...+..........++|.|+.+.. +.+....+.+..+.. ++..+++.+.||+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 291 (420)
T PRK09528 231 YVIGVACFYDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGA 291 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 555555555555667788877654 233333344333333 344455555555544
No 63
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.81 E-value=4.5e-17 Score=151.52 Aligned_cols=265 Identities=11% Similarity=0.005 Sum_probs=152.7
Q ss_pred CCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHH
Q 021040 18 TQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (318)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g 96 (318)
.++++.+ ...+-++.+...+..+...+++++|+++. |+|.+++|++.+...+...+.+++.|.++||+||||.++..+
T Consensus 10 ~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~dr~g~r~~~~~~~ 88 (393)
T PRK15011 10 AKSFDLT-STAFLIVAFLTGIAGALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFC 88 (393)
T ss_pred chhccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHH
Confidence 3444333 33444556777778888889999999875 999999999988887777777777766799999999865555
Q ss_pred HHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccch--hHHHHHHHHHHHH
Q 021040 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSR--VVLTSCRNAFTMV 174 (318)
Q Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R--~~~~~~~~~~~~~ 174 (318)
.+..+++..... +. .+.+..++ ...+.+...+...+...++..|..+ +++| +...+..+.+.++
T Consensus 89 ~~~~~~~~~~~~-------~~--~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 154 (393)
T PRK15011 89 CLLGVLACTLFA-------WN--RNYFVLLF----VGVFLSSFGSTANPQMFALAREHAD-KTGREAVMFSSFLRAQVSL 154 (393)
T ss_pred HHHHHHHHHHHH-------Hh--hHHHHHHH----HHHHHHHHHHhhHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHH
Confidence 554444433221 11 12222111 1122333333334444555555443 3334 2345677777777
Q ss_pred HHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcH-HHH
Q 021040 175 ANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKI-LYY 253 (318)
Q Consensus 175 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 253 (318)
|.++++.+++.+.. ..+||+.+++.++++++..+......||.++++++++ +..+ ...+++ +.+
T Consensus 155 g~~~g~~i~~~l~~----------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~ 219 (393)
T PRK15011 155 AWVIGPPLAYALAM----------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKELPLAT--GTLE---APRRNRRDTL 219 (393)
T ss_pred HHHHhhHHHHHHHH----------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCCcccc--cccc---ccccccccHH
Confidence 87776665544432 2479988888887777777776677787643322111 1111 112332 233
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.........+........+.|.|+++.+|.++...+.+..+..++++++.++.++++||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr 278 (393)
T PRK15011 220 LLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKR 278 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444455566789999999889887655444333334444444444444444
No 64
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.81 E-value=3.2e-17 Score=153.68 Aligned_cols=258 Identities=7% Similarity=-0.046 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 38 ITAACWFTYLLLFLT-DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~-~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
..+.++.+..+..-+ ++|+|++|.+++.++..+..++.+++.|.+.||+|.||. +.++.++.++....... .+.
T Consensus 48 ~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v-~~~~~ll~~i~~~~~~~-a~~--- 122 (462)
T PRK15034 48 CVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW-TVFSTAILIIPCVWLGI-AVQ--- 122 (462)
T ss_pred HHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHHHH-HHc---
Confidence 345555554444444 469999999999999999999999999999999999998 45676666666543321 000
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhc
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VST 191 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~ 191 (318)
....+.... .+.+++.+++ +...++....+++..+ ++||+++.++.....++|..+++.+.++++. .++
T Consensus 123 ~~~~s~~~l----li~r~l~Gig-g~~f~~~~~~vs~wfp-~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G 196 (462)
T PRK15034 123 NPNTPFGIF----IVIALLCGFA-GANFASSMGNISFFFP-KAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLG 196 (462)
T ss_pred ccCCCHHHH----HHHHHHHHHH-HHhHHHHHHHHHHHCC-HhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 001122322 2223455555 3344455666777765 5789999999887788888877777655443 121
Q ss_pred cCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Q 021040 192 AKTH---ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNV 268 (318)
Q Consensus 192 ~~~~---~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (318)
.... .....+|+...++.+.+.++..++.+++.+|.++. +...+++++++|||..|.+++.+++.+.++..
T Consensus 197 ~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~------~~~~~~~~~vlk~~~~Wllslly~~tFG~fvg 270 (462)
T PRK15034 197 VNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS------RASIADQLPVLQRLHLWLLSLLYLATFGSFIG 270 (462)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc------ccCHHHHHHHhCCCchhHHHHHHHHHHHHHHH
Confidence 1000 00134577777777766666666666655443221 12245677899999999999999888888888
Q ss_pred HHHHhHHhhhhcccccc-ch-hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 269 SQAYLAFYVINDLRMGQ-SA-KALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 269 ~~~~~~~yl~~~~g~~~-~~-~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
+..++|.|.++.++-.. .. ....+.+..+...+++++.||++++
T Consensus 271 ~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~ 316 (462)
T PRK15034 271 FSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGV 316 (462)
T ss_pred HHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCch
Confidence 88899999988663221 11 1222445556667888888887655
No 65
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.81 E-value=3.2e-17 Score=150.27 Aligned_cols=241 Identities=13% Similarity=0.064 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
..+.+|.+.++.|+|.++.|++.++..+...+++++.|+++||+||||. +.++.+...++..... .+ +.
T Consensus 19 ~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~~~~~~--------~~--~~ 87 (355)
T TIGR00896 19 VGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERS-VAAGLLLIAAGILIRS--------AP--GT 87 (355)
T ss_pred CcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHH-HHHHHHHHHHHHHHHH--------hc--cH
Confidence 3456677777779999999999999999999999999999999999998 5667666655544321 11 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (318)
...+ +.+++.+++.+.........+.|.. +++|+++.+..+.+.++|..+++.+++++.+..+ .+|
T Consensus 88 ~~l~----~~~~~~g~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~--------~~w 153 (355)
T TIGR00896 88 ALLF----AGTALIGVGIAIINVLLPSLIKRDF--PQRVGLMTGLYSMALMGGAALAAAATVPLAQHSG--------GHW 153 (355)
T ss_pred HHHH----HHHHHHHHHHHHHhccchHHHHHhC--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------hhH
Confidence 2222 2223455665555544555666655 3578999999988888888887777666654311 248
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g 282 (318)
++.+.+.++..++... ...+|.+++++++ +...+...++++|||.++.......+....+....+|+|.|+++ .|
T Consensus 154 ~~~f~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~-~g 228 (355)
T TIGR00896 154 QQALAWWALPALLALL---AWIPQVRRRVAAN-QTTTRLTPVRIWRSPLAWQVTVFFGLQSGLYYSLIGWLPAILIS-HG 228 (355)
T ss_pred HHHHHHHHHHHHHHHH---HHhhhhccccCCC-CCCCCCCCchhhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC
Confidence 8777665544333322 2234432221111 11112235677899998877776666667777788899999987 58
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 283 MGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+....+.+..+..++.+++.++.+++.||.
T Consensus 229 ~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~ 259 (355)
T TIGR00896 229 ASAATAGSLLALMQLAQAASALLIPALARRV 259 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhHHHHHhhh
Confidence 8876666666666667777777777777665
No 66
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.80 E-value=7.5e-17 Score=154.37 Aligned_cols=273 Identities=11% Similarity=0.085 Sum_probs=158.6
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-C--CChh--HHHH--HHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G--LSPR--GAAA--VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g--ls~~--~~g~--i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~ 99 (318)
+.-.++.+....-. ....+..+++.+. + .++. .++. +.++..+...+++++.|+++||+||||. +.++.++
T Consensus 19 ~~~~~g~~~~~~d~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~-l~~~~~l 96 (490)
T PRK10642 19 TAASLGNAMEWFDF-GVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKI-LAITIVI 96 (490)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH-HHHHHHH
Confidence 33345554433333 3445566666653 3 3332 1222 2466778899999999999999999998 5678888
Q ss_pred HHHHHHHHhCCCCCCcccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040 100 VAVSFSSVFGGCMPCRILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (318)
Q Consensus 100 ~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (318)
++++...... .++... .+....+++.+++.|++.+...++..+++.|..| +++|+++.++.+.+..+|..
T Consensus 97 ~~i~~~~~a~-------~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~G~~ 168 (490)
T PRK10642 97 MSISTFCIGL-------IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSP-DRKRGFMGSWLDFGSIAGFV 168 (490)
T ss_pred HHHHHHHHHh-------cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHH
Confidence 8877654431 222110 0111123344456778888877778888999886 47899999988888778877
Q ss_pred HHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-----cC-CC----CchHHHHHHHH
Q 021040 178 SLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LR-GN----SHARISWAYWF 247 (318)
Q Consensus 178 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~-~~----~~~~~~~~~~~ 247 (318)
+++.+...+...+.... ....+||+.+++.++++++ .++....+||+++..+ ++ ++ ++.+.++++++
T Consensus 169 lg~~~~~~~~~~~~~~~--~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (490)
T PRK10642 169 LGAGVVVLISTIVGEAN--FLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIA 245 (490)
T ss_pred HHHHHHHHHHHhcCHHH--hcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHHHHHHhhhhhccccccccccCCHHHHH
Confidence 77655433333221000 0125799999876655443 3444456788643110 00 00 01123456666
Q ss_pred hc-HH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHH----HHHHHHHHHHHHHHHHHh
Q 021040 248 KK-IL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAI----IYICSFIVSILLQVISLK 312 (318)
Q Consensus 248 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~----~~v~~~i~~~~~~~i~~~ 312 (318)
++ ++ +.......++....++...+|+|.|+++.+|.+.......... ..+++.+++.+.||+++|
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr 316 (490)
T PRK10642 246 TKHWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRR 316 (490)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 53 22 2222233344556677788899999998888876433322222 234445566666776665
No 67
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.79 E-value=1.6e-17 Score=156.42 Aligned_cols=235 Identities=12% Similarity=0.104 Sum_probs=174.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (318)
+.++.+-|++++....+..+++.+.|+++||+|-||++ ..+.++.+++.++. |.+. ..+.. ..++.++
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~-~~~~~~sa~~t~l~-----P~aa--~~~~~----~~~~~R~ 136 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVF-FISGLISALLTLLT-----PLAA--SIGFY----LLLVLRF 136 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHH-HHHHHHHHHHHHHH-----HHHH--Hhcch----hhHHHHH
Confidence 66888999999999999999999999999999999994 56777777765543 2111 11112 2234456
Q ss_pred HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (318)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 214 (318)
+.|++.+...+....+.....| ++||++..+....+..+|.+++..+++.+... ..+|++.|++.+++++
T Consensus 137 lqGl~~g~~~pa~~~i~~~W~P-~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s---------~~GW~sifY~~g~~g~ 206 (466)
T KOG2532|consen 137 LQGLGQGVLFPAIGSILAKWAP-PNERSTFIAILTAGSQLGTIITMPVSGLLCES---------SLGWPSIFYVFGIVGL 206 (466)
T ss_pred HhHHHHhHHHhhhhceeeeECC-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------CCCCchHHHHHHHHHH
Confidence 7788888888788888888776 68999999999888888877654333333321 2579999999999999
Q ss_pred HHHHHHHhcccccccccc-----c-----C----C--CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Q 021040 215 CFVGIFLSRTEEPRLKMG-----L-----R----G--NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVI 278 (318)
Q Consensus 215 l~~~~~~~~~~e~~~~~~-----~-----~----~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~ 278 (318)
+..++++.+..|+|.+++ | + + +++...+|+++++++++|...+..++...+.+...+|.|.|++
T Consensus 207 i~~~~w~~~~~d~P~~h~~is~~El~~I~~~k~~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~ 286 (466)
T KOG2532|consen 207 IWFILWFLFYSDSPSKHPNISEKELKYIEKGKSEAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLK 286 (466)
T ss_pred HHHHHHHHHhcCCcccCCCCCHHHHHHHHhcccccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999988888877654421 0 0 0 1113457999999999999999999999999999999999999
Q ss_pred hccccccchhhHHHHHHH----HHHHHHHHHHHHHHH
Q 021040 279 NDLRMGQSAKALVPAIIY----ICSFIVSILLQVISL 311 (318)
Q Consensus 279 ~~~g~~~~~~~~~~~~~~----v~~~i~~~~~~~i~~ 311 (318)
+.+|++..+.+.+..+-+ +..++++.+.||+..
T Consensus 287 ~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~ 323 (466)
T KOG2532|consen 287 EVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTF 323 (466)
T ss_pred HHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999765554444333 555666666666554
No 68
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.79 E-value=8.5e-17 Score=148.27 Aligned_cols=255 Identities=15% Similarity=0.049 Sum_probs=151.7
Q ss_pred HHHHHHHHh---CCChhHHHHHHHH-----HHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 46 YLLLFLTDI---GLSPRGAAAVMLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 46 ~l~~~l~~~---gls~~~~g~i~~~-----~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
+..+++.+. +.++.+.+.+.+. ..+...+++|+.|+++||+||||. +..+.++..++...... .+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~~--~~---- 86 (394)
T TIGR00883 14 FAAVLVFHTFFPPSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKT-LVITLLMMGIGTLLIGL--LP---- 86 (394)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHH-HHHHHHHHHHHHHHHhh--CC----
Confidence 444555443 3556777765543 334445788999999999999998 45677777777554432 11
Q ss_pred Cccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040 118 STSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (318)
Q Consensus 118 ~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (318)
+... .+....+.+.+++.+++.+...+...+++.|..+ +++|++..+..+.+..+|.++++.++..+...++..
T Consensus 87 -~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~-- 162 (394)
T TIGR00883 87 -SYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAP-PGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDD-- 162 (394)
T ss_pred -ChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCC-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--
Confidence 1100 0111122333345667766666666778888875 578999999999888888888776654333222110
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-cCCCCchHHHHHHHHhcHH--HHHHHHHHHHHHHHHHHHHHH
Q 021040 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-LRGNSHARISWAYWFKKIL--YYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 272 (318)
.....+|++.+.+.+++.++.. ......||+++.++ ++++++.++++++.+|+++ ++......++.........++
T Consensus 163 ~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
T TIGR00883 163 ALLEWGWRIPFLVSAVLVLIGL-YLRRNLEETPVFEKAQEKHKKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTY 241 (394)
T ss_pred HhhccchHHHHHHHHHHHHHHH-HHHHhcCCChhHHHHHhccccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0012468888776655544433 33344566543221 1112222345667777765 766667777777777788899
Q ss_pred hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
+|.|++++.|.+....+.......+.+.++..+.++++||
T Consensus 242 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 281 (394)
T TIGR00883 242 LPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDR 281 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887655544444444444444444444444
No 69
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.79 E-value=2.5e-16 Score=146.34 Aligned_cols=256 Identities=12% Similarity=0.004 Sum_probs=161.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHH--HHHHHHHHHHHhhhhHH-HhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAV--MLSGQIADGFATIFIGE-LIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i--~~~~~i~~~i~~p~~G~-lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
+...+......+++|.|++|.|.|.+++|+. .....+...+.+|+.+. .+||+||||.|++...++.+++...+..
T Consensus 11 ~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~- 89 (390)
T TIGR02718 11 LSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLAL- 89 (390)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHc-
Confidence 5556667788899999999999999999997 46778889899999955 7999999999765443333322222210
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
..+ . .....+... ......+..+..++..+++..|..+ +++++...+.+..+..+|.+++....+.+.+
T Consensus 90 ~~~---~-~~~~~~~~~----~~~~~~~~~a~~d~~~d~~~~~~~~-~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~-- 158 (390)
T TIGR02718 90 VGP---D-VAGAGWAVG----LLACASLASATQDIATDGMAAEHFN-GRTLAKGNAVQIAGVMIGFFGGGAGTLVLFG-- 158 (390)
T ss_pred CCc---c-hhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 011 1 111111111 1123445566666667777666543 4566777777777767777766554434433
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ 270 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (318)
..+|+..+++.+++..+..+...+..||++++ + +++++..+++++.+|+|.++......++.........
T Consensus 159 --------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 228 (390)
T TIGR02718 159 --------KFGQRPAFLLVACVPLASLVCVLWLKDRAVAS-P-EAPLARRASLFRFFRRPLAWSLLALALLSAMTAVSGF 228 (390)
T ss_pred --------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcCc-c-ccchhhHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHH
Confidence 24788888888777666555544443333211 1 1112234557889999998888877788877777788
Q ss_pred HHhHHhhhhccccccchhhHHHHHH-----HHHHHHHHHHHHHHHHh
Q 021040 271 AYLAFYVINDLRMGQSAKALVPAII-----YICSFIVSILLQVISLK 312 (318)
Q Consensus 271 ~~~~~yl~~~~g~~~~~~~~~~~~~-----~v~~~i~~~~~~~i~~~ 312 (318)
++.+.|++| .|.++++.+.+-.+. .++..+++.+.||+++|
T Consensus 229 ~~~~~~l~~-~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~ 274 (390)
T TIGR02718 229 GLSKLYLVD-AGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLW 274 (390)
T ss_pred HHhhHHHHh-cCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999988 598887666543322 23344555555555543
No 70
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.79 E-value=1.4e-16 Score=148.28 Aligned_cols=235 Identities=9% Similarity=-0.008 Sum_probs=142.5
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
+++.....+..+...+...+..++++.++++. |.|+.++|++.++..+..++.+|+.|+++||+||||. +..+.++.+
T Consensus 14 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~ 92 (399)
T PRK05122 14 TLRIVSIVMFTFISYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKA-VVFGLCGCA 92 (399)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcch-HHHHHHHHH
Confidence 33445566666777777888888999988764 9999999999999999999999999999999999998 566766665
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++...... .. +.++. ....+..+.+.+++.+++.+...+...++..|..+ +++|+++.++.+....+|..+++.
T Consensus 93 ~~~~~~~~--~~--~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~ 166 (399)
T PRK05122 93 LSGLLYLL--AG--LLAAW-PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVG-ALHTGRVISWNGIATYGALAIGAP 166 (399)
T ss_pred HHHHHHHH--hh--hhhcc-chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcC-hhhhccchhhhhhhhhHHHHHHHH
Confidence 54332211 00 11110 01111222333456777777776666777778764 578999999888877777777666
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYML 261 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (318)
+++.+... .+|++.+++.++++++..+. ....||+++ +++++ .++++.+|+ ++.......+
T Consensus 167 l~~~l~~~----------~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~----~~~~~~~~~--~~~~~~~~~~ 227 (399)
T PRK05122 167 LGVLLYHW----------GGLAGLGLLIMLLALLGLLL-ARPRPAVPP--VKGER----LPFRRVLGR--VWPYGMGLAL 227 (399)
T ss_pred HHHHHHHc----------ccHHHHHHHHHHHHHHHHHH-HhcCCCCCC--CCccc----hhHHHHHHH--HHHHHHHHHH
Confidence 65544432 45777766555444332222 222222211 11111 123333332 2222223334
Q ss_pred HHHHHHHHHHHhHHhhhhccccc
Q 021040 262 TRLVVNVSQAYLAFYVINDLRMG 284 (318)
Q Consensus 262 ~~~~~~~~~~~~~~yl~~~~g~~ 284 (318)
..+.......+.|.|+++. |.+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~-~~~ 249 (399)
T PRK05122 228 ASIGFGTIATFITLYYAAR-GWD 249 (399)
T ss_pred HHHHHHHHHHHHHHHHHHc-ccc
Confidence 4445556667888887763 543
No 71
>PRK15075 citrate-proton symporter; Provisional
Probab=99.79 E-value=1.7e-16 Score=149.66 Aligned_cols=275 Identities=13% Similarity=0.054 Sum_probs=151.9
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHH-HHH-----HHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAV-MLS-----GQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i-~~~-----~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~ 100 (318)
....++.+.............|...+|.+.++.+.+.. .+. ..+...+++++.|.++||+||||.+ ..+.++.
T Consensus 18 ~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l-~~~~~~~ 96 (434)
T PRK15075 18 LRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGL-IVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHH-HHHHHHH
Confidence 44445555444445555555555555668777665433 222 2333357789999999999999984 5677777
Q ss_pred HHHHHHHhCCCCCCcccCccchh--HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLK--VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
.++...... .++.... ......++.+++.+++.+...+....+++|..| +++|++..++.+.+.++|..+
T Consensus 97 ~~~~~l~~~-------~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~~~~~g~~~ 168 (434)
T PRK15075 97 ASGTLLIAF-------VPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIAT-PGRKGFYTSWQSASQQVAVVF 168 (434)
T ss_pred HHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCC-cccchHHHHHHHHHHHHHHHH
Confidence 666554321 2211100 000112333455677777666666678889886 579999999988888888777
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHH-H
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVA-L 257 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 257 (318)
++.++..+...+... .....+||+.+++.+... ..........||+++..+++++.+.++.+++..|+++.+... .
T Consensus 169 g~~~g~~l~~~~~~~--~~~~~gWr~~f~~~~~~~-~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (434)
T PRK15075 169 AALLGYLLNQWLSPA--QMAEWGWRIPFLIGCLIV-PFIFLIRRSLEETEEFLARKHRPSMREIFRSLAANWRIVLAGML 245 (434)
T ss_pred HHHHHHHHHHhCCHH--HHhccchHHHHHHHHHHH-HHHHHHHHhcCCCHHHHHhhhccccccHHHHHHHhHHHHHHHHH
Confidence 776665544322100 001357888887643322 222222223344322111111112233455556666655443 3
Q ss_pred HHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 258 VYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
..++..........|.|.|+++..|++..+.........++++++.++.++++||+
T Consensus 246 ~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~ 301 (434)
T PRK15075 246 MVAMTTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRI 301 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555667888999999998999865444433333344444444444444443
No 72
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.78 E-value=8.8e-17 Score=145.19 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=165.5
Q ss_pred HHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH-hCCCCCCcccCccchh
Q 021040 46 YLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV-FGGCMPCRILSTSTLK 123 (318)
Q Consensus 46 ~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~-~~~~~~~~~~~~~~~~ 123 (318)
.+.+++++ .|+|+.|.+++.++..+..++...+.|.+.||+|.||.+. .+.++..+-.+.+ +. .+..+.+
T Consensus 35 ~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~-~s~~l~~IP~~~~~~a-------~~~~~~~ 106 (417)
T COG2223 35 PLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTI-LSMLLLLIPCLGLAFA-------VTYPSTW 106 (417)
T ss_pred HHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHH-HHHHHHHHHHHHHHHH-------ccCCchH
Confidence 34555555 4999999999999999999999999999999999988864 4555544443322 21 0111122
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (318)
. + ++...+.|++-+... ...+.++...| +|+++.+.++.. ..|+|..+...++++++...+ ...|+
T Consensus 107 ~-l---l~~gll~G~~GasFa-v~m~~~s~~fP-~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g-------~~~w~ 172 (417)
T COG2223 107 Q-L---LVIGLLLGLAGASFA-VGMPNASFFFP-KEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG-------FLAWR 172 (417)
T ss_pred H-H---HHHHHHHhcccceeh-cccccccccCC-hhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh-------hHHHH
Confidence 2 2 222234554444333 23445566665 578899999988 789999998888766665432 11377
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccCCCCchH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040 204 WIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (318)
Q Consensus 204 ~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g 282 (318)
....+.....++..+..++..+|.++.++ ..++.+ .+++.++|||+.|.+.+.|+...-++..+..++|.|++++++
T Consensus 173 ~~~~i~~~~l~v~~v~~~~~~~d~p~~r~--~~~~~~~~~~~~v~~~~~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg 250 (417)
T COG2223 173 NVAGIYVVALAIAAVLAWLGMNDVPEHRA--SVKPQLPAQLKAVFSNKDTWLLSLLYFATFGGFVGFSAYLPMYLVTQFG 250 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCChhhhc--cccccchhHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 77777777777777777788877655322 112222 678899999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 283 MGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 283 ~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.++...+.........+.+.-.+.++++||
T Consensus 251 ~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR 280 (417)
T COG2223 251 LSPVTAGLIAFLFPLIGALARPLGGWLSDR 280 (417)
T ss_pred CChhhHHHHHHHHHHHHHHHHhccchhhhh
Confidence 998665544443333343444444444444
No 73
>PRK09952 shikimate transporter; Provisional
Probab=99.78 E-value=2.5e-16 Score=148.64 Aligned_cols=256 Identities=10% Similarity=0.011 Sum_probs=148.6
Q ss_pred HHHH-HHHHHH-h--CCChhHHHHHH-----HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCC
Q 021040 44 FTYL-LLFLTD-I--GLSPRGAAAVM-----LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (318)
Q Consensus 44 ~~~l-~~~l~~-~--gls~~~~g~i~-----~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~ 114 (318)
..++ +.+..+ . +.++. .+++. ++..+...+++++.|+++||+||||. +..+.++++++...... .
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~-l~~~~~~~~~~~~~~~~--~-- 114 (438)
T PRK09952 41 YGITAALVFNREFFPQVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRM-LMLTVWMMGIATALIGL--L-- 114 (438)
T ss_pred HHHHHHHHHHHhcCCCCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHhc--C--
Confidence 3444 344544 3 67766 35443 34556677888999999999999998 56687777777654432 1
Q ss_pred cccCccch--hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040 115 RILSTSTL--KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (318)
Q Consensus 115 ~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (318)
++... .+....+.+.+.+.|++.+...+....++.|..| +++|++..+..+.+..+|.+++..+...+...+..
T Consensus 115 ---~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p-~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~ 190 (438)
T PRK09952 115 ---PSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP-KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTD 190 (438)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 22110 1111223344556778887776666778888876 57899888888888777777665544333322210
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccc---c-CCCCchHHHHHHHHhcHHHHHHHH-HHHHHHHHHH
Q 021040 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---L-RGNSHARISWAYWFKKILYYQVAL-VYMLTRLVVN 267 (318)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 267 (318)
.. ....+||+.+++.+++.++. +......||+++..+ + +++++.....+.++|+|+.+.... ..++..+..+
T Consensus 191 ~~--~~~~gWr~~f~~~~~~~l~~-~~l~~~~~es~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T PRK09952 191 EQ--FLSWGWRIPFLFSIVLVLIA-LWVRNGMEESAEFEQQQHEQAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMY 267 (438)
T ss_pred HH--hhccChHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHHhhcccccccCCHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence 00 01257998887766654432 333344566543211 1 111111122345677877665543 4455556667
Q ss_pred HHHHHhHHhhhhccccccchhhHHHH----HHHHHHHHHHHHHHHHHHh
Q 021040 268 VSQAYLAFYVINDLRMGQSAKALVPA----IIYICSFIVSILLQVISLK 312 (318)
Q Consensus 268 ~~~~~~~~yl~~~~g~~~~~~~~~~~----~~~v~~~i~~~~~~~i~~~ 312 (318)
...+|.|.|+++..|++......+.. ...++..+.+.+.||++||
T Consensus 268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr 316 (438)
T PRK09952 268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRR 316 (438)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch
Confidence 78889999999999988753322222 2234445556666666554
No 74
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.78 E-value=2.4e-19 Score=163.08 Aligned_cols=271 Identities=10% Similarity=0.033 Sum_probs=186.8
Q ss_pred CCCchhhhhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040 20 PVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (318)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~ 98 (318)
+-+++......+.+..|-.-.+.+....+ =.++ ++++++..|++.+...+...+++|++|+++||+.||+. +..|..
T Consensus 29 ~~~~~~l~il~~vnlmny~Dr~~iagv~~-~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v-~~vG~~ 106 (493)
T KOG1330|consen 29 KSPTLTLVILCLVNLMNYADRYTIAGVLK-EVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRV-IAVGIF 106 (493)
T ss_pred ccchHHHHHHHHHHHHHHhhhhhhhhhhH-HHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceE-EeeHHH
Confidence 33344444455555544444333322111 1122 39999999999999999999999999999999999998 678999
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
++.++.+..- +. ...+ . +.+.+.+.|+|.+.+.+...++++|++++ ++|+++.++.+...++|..+
T Consensus 107 iW~~Av~~~~-------fs--~~Fw-q---~~l~R~~vGiGeAs~~~ia~s~IaD~f~~-~~Rs~~~~ify~~ipvGsgl 172 (493)
T KOG1330|consen 107 IWTLAVFASG-------FS--NHFW-Q---VLLCRGFVGIGEASYSPIAPSLIADSFPD-DKRSRVLGIFYFAIPVGSGL 172 (493)
T ss_pred HHHHHHHHHH-------HH--HHHH-H---HHHHHHHhccchhhhcccchhHhhhcCcc-hhhhHHHHHhhhhcccccce
Confidence 9888866432 22 1122 2 23334568899999998899999999864 79999999999999999877
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC---------CCCchHHHHHHHHhc
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR---------GNSHARISWAYWFKK 249 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~---------~~~~~~~~~~~~~~~ 249 (318)
|..++.. ++.. ...|||.+.+.++++++++++.+++++|+++++.++ +..+..++.+.+.|+
T Consensus 173 G~vvgs~-va~~--------~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~~~~~~~~~~~~ts~~kDl~~l~~~ 243 (493)
T KOG1330|consen 173 GYVVGSV-VASL--------TFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDEVDGENKMVKPFTSVWKDLKVLAKI 243 (493)
T ss_pred eEEeeee-eccC--------ccceEEEEEeehHHHHHHHHHHHhhccCcccccccccccCCcCCCCccchHHHHHHHHcc
Confidence 6655422 2211 234999999999999999999999999987532211 122345666777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc---cchh----hHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040 250 ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAK----ALVPAIIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~----~~~~~~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
|.+....+.+...++....+.-+.|.++.+.+.+. .... ++.-....++.+.++++.||++++...
T Consensus 244 ~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~ 316 (493)
T KOG1330|consen 244 KVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPN 316 (493)
T ss_pred CceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHHHhccc
Confidence 88777777777777776666667777777665443 2211 222334557778888888888885544
No 75
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.78 E-value=2.2e-16 Score=142.95 Aligned_cols=233 Identities=18% Similarity=0.182 Sum_probs=172.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
+..+..........+..+.+.++.|.++.+.+++.+...+...+.+|+.|.++||+||||. +..+.+...++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~-~~~~~~~~~~~~~~~~~- 83 (352)
T cd06174 6 LGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRV-LLLGLLLFALGSLLLAF- 83 (352)
T ss_pred HHHHHHHHhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchh-hHHHHHHHHHHHHHHHH-
Confidence 3445556666677788888888889999999999999999999999999999999999997 66787777777654431
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
.+ +..... +.+.+.+++.+...++..++..|..+ +|+|++..+..+....+|..+++.+++.+..
T Consensus 84 ------~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-- 148 (352)
T cd06174 84 ------AS--SLWLLL----VGRFLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAE-- 148 (352)
T ss_pred ------hc--cHHHHH----HHHHHHHcccccccHhHHHHHHHhCC-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHH--
Confidence 11 122222 22345677777777888889999886 4799999999999999998888777655543
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQ 270 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (318)
..+|++.+.+.+++.++..+...+. + |.++......++.........
T Consensus 149 --------~~~~~~~~~~~~~~~~~~~~~~~~~-~------------------------~~~~~~~~~~~~~~~~~~~~~ 195 (352)
T cd06174 149 --------SLGWRWLFLILAILGLLLALLLLFL-L------------------------RLLLLLALAFFLLSFGYYGLL 195 (352)
T ss_pred --------HhhHHHHHHHHHHHHHHHHHHHHHH-H------------------------HHHHHHHHHHHHHHhHHHHHH
Confidence 2458888877766666555444322 2 667777777888888888899
Q ss_pred HHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 271 AYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 271 ~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+.|.+.++..|.++.+.+.......++..++..+.+++.||.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 238 (352)
T cd06174 196 TYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRL 238 (352)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877666666666666666666666555554
No 76
>PRK12382 putative transporter; Provisional
Probab=99.78 E-value=6.7e-16 Score=143.41 Aligned_cols=257 Identities=10% Similarity=0.065 Sum_probs=145.5
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
....++.+...+...+..+.+|.++.+ +|+|.+++|++.+++.+...+.+|+.|+++||+||||+ +..+.+...++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~-l~~~~~~~~~~~~ 96 (392)
T PRK12382 18 FRIAFAVFLTYMTVGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRS-ALQGMLACGLAGL 96 (392)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHH-HHHHHHHHHHHHH
Confidence 334445566666677777888888765 59999999999999999999999999999999999998 4566665555432
Q ss_pred HHhC-CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFG-GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (318)
Q Consensus 106 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (318)
.... ...+.. ...+.. ...+.+.+.+++.+...+...+++.|..+ +|+|+++.++.+.+...|..+++.+++
T Consensus 97 ~~~~~~~~~~~--~~~~~~----~l~~~r~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~a~~~~~~~~~~g~~~g~~~~~ 169 (392)
T PRK12382 97 AYLLAAILPVS--APFKFA----LLVVGRLILGFGESQLLTGALTWGLGLVG-PKHSGKVMSWNGMAMYGALAAGAPLGL 169 (392)
T ss_pred HHHhhhccccc--hhHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhCC-ccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 1110 001100 001112 12233345677777666666677778775 588999999888877777776665544
Q ss_pred HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHH
Q 021040 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRL 264 (318)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
.+.. ..+|++.+.+..+..++.. ......||.+++ ++++.+.++..+.. +.......+...
T Consensus 170 ~l~~----------~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~~~~l~~~ 230 (392)
T PRK12382 170 LLHS----------HFGFAALALTTMVLPLLAW-AFNGTVRKVPAH--AGERPSLWSVVGLI------WKPGLGLALQGV 230 (392)
T ss_pred HHHh----------ccChHHHHHHHHHHHHHHH-HHHHhccCCCCC--cccCchHHHHHHHH------HHhHHHHHHHHH
Confidence 4332 2357766554433332222 222233332211 11112222222222 211122223334
Q ss_pred HHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 265 VVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 265 ~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.......+.|.|+++. |.+..... .....++.+++.++.+++.||.
T Consensus 231 ~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~g~l~~r~ 276 (392)
T PRK12382 231 GFAVIGTFVSLYFASK-GWAMAGFT--LTAFGGAFVLMRVLFGWMPDRF 276 (392)
T ss_pred HHhHHHHHHHHHHHhc-CCchhHHH--HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445667778888763 54432221 1222344455555566666654
No 77
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.77 E-value=1.5e-16 Score=166.71 Aligned_cols=275 Identities=13% Similarity=-0.028 Sum_probs=173.6
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHH-hCCC--hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTD-IGLS--PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gls--~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~ 103 (318)
..+.+..+...+........+..++.+ .+.+ ....+++.+++.+...+++|+.|.++||+||||.+ .++.++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l-~~~~~~~~~~ 90 (1146)
T PRK08633 12 LPLLLTQFLNAFNDLGHKILIQNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVI-RIVKLFEVGL 90 (1146)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHH-HHHHHHHHHH
Confidence 333344444444433333334444433 4443 45678999999999999999999999999999984 4555443333
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
..+... . ... .+.+.+ .+..++.+++.+...++..++++|.++ +++|+++.++.+.+..+|.++++.++
T Consensus 91 ~~~~~~---~-~~~--~~~~~l----~~~r~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~ig~~lg~~l~ 159 (1146)
T PRK08633 91 TLLIVL---A-YYL--GWFWLA----FAVTFLLGAQSAIYSPAKYGIIPELVG-KENLSRANGLLEAFTIVAILAGTALF 159 (1146)
T ss_pred HHHHHH---H-HHH--ccHHHH----HHHHHHHHHHHHhhchHHHhhhHHhcC-cccchhhhhHHHHHHHHHHHHHHHHH
Confidence 222210 0 001 112222 223345677778777788889999986 47899999999999999999888887
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc---CC----CCchHHHHHHHHhcHHHHHHH
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL---RG----NSHARISWAYWFKKILYYQVA 256 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~ 256 (318)
+.+.......+ .+....+.|.+.+.++...++.++..+..||.+..+.. ++ ....++.++.++++|.++..+
T Consensus 160 ~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 238 (1146)
T PRK08633 160 SFLFESVNGNT-PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKKYLFPKLLWRNLKLLRSDRVLWLAI 238 (1146)
T ss_pred HHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccccccHHHHHHHHHHHhcCcHHHHHH
Confidence 66654311000 00001233443333333333333444455665432211 11 112345677888999988887
Q ss_pred HHHHHHHHHHHHHHHHhHHhhhhccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040 257 LVYMLTRLVVNVSQAYLAFYVINDLRMGQS-AKALVPAIIYICSFIVSILLQVISLKLY 314 (318)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~-~~~~~~~~~~v~~~i~~~~~~~i~~~~~ 314 (318)
+..++.+........++|.|+.+.+|.+.. ..+.+.....+++++++++.+++++|.-
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~ 297 (1146)
T PRK08633 239 IGLSYFWFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHI 297 (1146)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 777777777777888999999999999887 6777766777888889999999988853
No 78
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.76 E-value=1.4e-17 Score=163.38 Aligned_cols=264 Identities=11% Similarity=0.060 Sum_probs=175.6
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc-------
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL------- 117 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~------- 117 (318)
..++..-++++++.++.|++.+.+.+..++..++.|+++||+||||. +.+|.++++++.++.. +|..+.
T Consensus 54 ~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~-i~~g~ll~~lg~ll~a---lphf~~~~y~~~~ 129 (633)
T TIGR00805 54 SSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIV-IGIGCAIMGLGSFLLS---LPHFLSGRYSYST 129 (633)
T ss_pred hhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceE-EEecHHHHHHHHHHHh---ChHHhcCCccccc
Confidence 33444444569999999999999999999999999999999999887 6788888888866543 231000
Q ss_pred ------------------C----------------ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH
Q 021040 118 ------------------S----------------TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV 163 (318)
Q Consensus 118 ------------------~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 163 (318)
. ..+....+..+++.+++.|+|.+...+...+++.|..+ +++|+.
T Consensus 130 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~-~~~~~~ 208 (633)
T TIGR00805 130 TVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAK-SKNSPL 208 (633)
T ss_pred cccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCC-ccccHH
Confidence 0 00000011223344466788888777777788888875 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC----------cccchh--HHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 021040 164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAK----------THADLE--NQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM 231 (318)
Q Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~----------~~~~~~--~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~ 231 (318)
..++.+.+..+|.+++..+++.+...+.+. ++.|.. ..|+..|++.++++++.+++.+++.++.++++
T Consensus 209 ~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~ 288 (633)
T TIGR00805 209 YIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPFFFFPKALPKEG 288 (633)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCcc
Confidence 999999999999988888877766533211 011111 13666677777777776655444433322110
Q ss_pred --c-----cC------CC----------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchh
Q 021040 232 --G-----LR------GN----------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK 288 (318)
Q Consensus 232 --~-----~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~ 288 (318)
+ ++ ++ ++..+.+++++|||.++...+..++.......+.+|+|.|+++++|+++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a 368 (633)
T TIGR00805 289 KRVNVDVHETEKLEKSEDKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA 368 (633)
T ss_pred cccchhhhhhhcccccccccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 0 00 00 0122457789999999999999999999999999999999999999998766
Q ss_pred hHHHHHHHH-HHHHHHHHHHHHHHhh
Q 021040 289 ALVPAIIYI-CSFIVSILLQVISLKL 313 (318)
Q Consensus 289 ~~~~~~~~v-~~~i~~~~~~~i~~~~ 313 (318)
+.+.....+ +++++.++.+++.||+
T Consensus 369 g~l~~~~~i~~~~vG~~l~G~l~~r~ 394 (633)
T TIGR00805 369 NFLIGVVNLPAAGLGYLIGGFIMKKF 394 (633)
T ss_pred HHHhhhhhhhHHHHHHhhhhheeeee
Confidence 554433222 3445555555555544
No 79
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.75 E-value=1.2e-15 Score=146.06 Aligned_cols=178 Identities=14% Similarity=0.048 Sum_probs=117.9
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (318)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~ 103 (318)
+......++.+...+......+.++.+.++.|+|+.+.+++.+...+...+++++.|.++||+||||. +..+.+..+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~-~~~~~~~~~~~ 98 (496)
T PRK03893 20 KAFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLA-MVISIVLFSVG 98 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHH
Confidence 33345555555555555555555666556679999999999999999999999999999999999987 55677776666
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
...... .+ +.+.. .+..++.+++.+.......+++.|..+ +++|++..+....+..+|..+++.+.
T Consensus 99 ~~~~~~-------~~--~~~~l----~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~~~~~~ 164 (496)
T PRK03893 99 TLACGF-------AP--GYWTL----FIARLVIGMGMAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVY 164 (496)
T ss_pred HHHHHH-------Hh--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554321 11 12222 222345666666666666777888875 57899999988888888877766655
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~ 227 (318)
+.+.. ..+|++.+++.+. ..+..++.....||+
T Consensus 165 ~~l~~----------~~~w~~~f~~~~~-~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 165 SLVVP----------VWGWRALFFIGIL-PIIFALWLRKNLPEA 197 (496)
T ss_pred HHHhc----------cCCHHHHHHHHHH-HHHHHHHHHHhCCCc
Confidence 44332 2468888765433 233333333445654
No 80
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.75 E-value=6.4e-16 Score=146.61 Aligned_cols=243 Identities=12% Similarity=-0.043 Sum_probs=154.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (318)
Q Consensus 44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 123 (318)
..+++.+..+.|.+.++.+++.+...+...++.|+.|+++||+|||+. +..+.++.+++..... +.+ +.+
T Consensus 39 ~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~~~-------~~~--~~~ 108 (455)
T TIGR00892 39 TVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPV-VIAGGLLASLGMILAS-------FSS--NVI 108 (455)
T ss_pred hhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHH-HHhhHHHHHHHHHHHH-------Hhh--hHH
Confidence 344555556679999999999999999999999999999999999997 5567666666544331 111 122
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (318)
...... +++.+++.+....+..+++.+.. +++|+++.++.+.+..+|..+++.+.+.+.. ..+||
T Consensus 109 ~l~~~~---~~l~G~~~~~~~~~~~~~~~~~~--~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~----------~~gwr 173 (455)
T TIGR00892 109 ELYLTA---GFITGLGLAFNFQPSLTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFE----------SFGWR 173 (455)
T ss_pred HHHHHH---HHHHHhcchhhhhHHHHHHHHHH--HhhHHHHHHHHHhcccHHHHHHHHHHHHHHH----------HhChH
Confidence 211111 13345565554445556666665 3689999999988888887766555444332 35799
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccc----ccc--c----C---CC---CchHH---HH--HHHHhcHHHHHHHHHHHHH
Q 021040 204 WIAYSSIFIGCCFVGIFLSRTEEPRL----KMG--L----R---GN---SHARI---SW--AYWFKKILYYQVALVYMLT 262 (318)
Q Consensus 204 ~~~~i~~~~~~l~~~~~~~~~~e~~~----~~~--~----~---~~---~~~~~---~~--~~~~~~~~~~~~~~~~~~~ 262 (318)
+.+++.+++.+++.+..++..++++. +++ + + ++ .+..+ .. .+++|+|+++..+...++.
T Consensus 174 ~~f~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 253 (455)
T TIGR00892 174 GSFLILGGLLLHCCVCGALMRPVGPSQRVSKSKSKEGLPPDGSTKKLSKKSTAEKINRFLDFSLFTHRGFLVYLSGNVIM 253 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccccccccccccCCCCCccccccccchhhhhhhhcchHHhcCchHHHHHHHHHHH
Confidence 99988887766554444333332211 000 0 0 00 00011 11 2578899999888877777
Q ss_pred HHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 263 RLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 263 ~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
.++.....+++|.|+++ .|.+....+.+-.+..++.+++.++.++++||
T Consensus 254 ~~~~~~~~~~l~~~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 254 FLGFFAPIIFLVPYAKD-KGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred HHHccchHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777778899999876 58887666555555556666665555555543
No 81
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.75 E-value=4.9e-16 Score=162.82 Aligned_cols=231 Identities=11% Similarity=-0.065 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH--HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG--AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (318)
Q Consensus 58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~--~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (318)
....+++.+++.+..++.+|+.|.++||+||||.+.. .+.+...+.....+ .. .+.+.+ .+..++
T Consensus 51 ~~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~-------~~--~s~~~l----~~~~~l 117 (1140)
T PRK06814 51 NALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF-------HL--NSVPLL----FAALFL 117 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-------HH--hhHHHH----HHHHHH
Confidence 3568888999999999999999999999999987322 12122111111111 01 122322 223356
Q ss_pred HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (318)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 215 (318)
.+++.+...+...++++++.+ +++|++++++.+.+..+|.++++.+++.+... .+|++.++..+ +..+
T Consensus 118 ~gi~~a~~~p~~~a~l~~~~~-~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~----------~~~~~~~~~~~-~~~~ 185 (1140)
T PRK06814 118 MGIHSALFGPIKYSILPDHLN-KDELLGANALVEAGTFIAILLGTIIGGLATIS----------GNFVILVALLM-GIAV 185 (1140)
T ss_pred HHHHHHhhchHHHHhhHhhcC-ccccchhhHHHHHHHHHHHHHHHHHHHHHHhc----------cccHHHHHHHH-HHHH
Confidence 778888888888899999986 57899999999999999999988887766642 45777763333 3333
Q ss_pred HHHHHHhccccccccccc-CCC----CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhH
Q 021040 216 FVGIFLSRTEEPRLKMGL-RGN----SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL 290 (318)
Q Consensus 216 ~~~~~~~~~~e~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~ 290 (318)
.+++..+.++|++.+++. +.+ ....+.++.+.++|.++...+..++.++......+++|.|+++.+|.+....+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~ 265 (1140)
T PRK06814 186 LGWLASLFIPKTGNAAPDLKIDRNIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGDENVATL 265 (1140)
T ss_pred HHHHHHhhCCCCCCCCCCCeeccchHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHH
Confidence 344444556665332211 111 123456788999999999988888888888888899999999999998877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 021040 291 VPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 291 ~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+.....++.++++++.++++++.
T Consensus 266 ~~~~~~~g~~ig~~~~g~l~~~~ 288 (1140)
T PRK06814 266 FLAVFSVGVAVGSFLASKLSEGR 288 (1140)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCc
Confidence 77777788889999999988654
No 82
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.74 E-value=1.5e-15 Score=145.46 Aligned_cols=264 Identities=17% Similarity=0.088 Sum_probs=181.3
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
++.+..++...+...-++-++.+..-|+.++|++..+..+-..+.+|+.|.++||+.|||. ++.+-+..++....+..
T Consensus 17 ~a~~iS~lG~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrri-li~~~~~~~~~~~~L~~- 94 (524)
T PF05977_consen 17 IAQLISNLGDWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRI-LILSQLLRALVALLLAV- 94 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH-HHHHHHHHHHHHHHHHH-
Confidence 4444444544444444566666767789999999999999999999999999999999998 45555544433222210
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
. ...+..+.+. + .+..++.+.+.+...+...+.++++.+ +++-.+++++.+...+++.++|+.+++.++..+
T Consensus 95 --l-~~~~~~~~~~-L---l~~~fl~g~~~a~~~PA~~A~ip~lV~-~~~L~~A~al~s~~~niar~iGPalgG~Lva~~ 166 (524)
T PF05977_consen 95 --L-AFFGLLSPWL-L---LILTFLLGIGSAFFNPAWQAIIPELVP-KEDLPAANALNSISFNIARIIGPALGGILVAFF 166 (524)
T ss_pred --H-HHhCcCCHHH-H---HHHHHHHHHHHHHHHHHHHHHHHHhcc-HhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 0 0011122221 1 222346778888888899999999986 467788999999999999999999988887653
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc-C--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL-R--GNSHARISWAYWFKKILYYQVALVYMLTRLVVN 267 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (318)
+..+.+.+.++..+ ..+......|++.++++. + -.+..++.++.+.++|..+..+...++..+...
T Consensus 167 ----------G~~~~f~inalsfl-~~i~~l~~~~~~~~~~~~~~e~~~~~l~~G~ryv~~~~~l~~~l~~~~~~~l~~~ 235 (524)
T PF05977_consen 167 ----------GAAAAFLINALSFL-ISILALLRWKPPPPPSSLPRERFFSALREGLRYVRSSPPLRSVLLRSFLFNLFAS 235 (524)
T ss_pred ----------HHHHHHHHHHHHHH-HHHHHHHHccccccccccchhhhhhhHHHHHHHHhcchHHHHHHHHHHHHHHhhh
Confidence 34556655543333 333333444433222111 1 123456777888888887777665666666555
Q ss_pred HHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 268 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
.....+|.+..+.+|.++...+.+.....+++++++++.+|+.+++-.
T Consensus 236 a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~ 283 (524)
T PF05977_consen 236 AVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSS 283 (524)
T ss_pred HHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCc
Confidence 666778999999999999888988888899999999999999987643
No 83
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.74 E-value=1.3e-16 Score=144.31 Aligned_cols=285 Identities=12% Similarity=0.068 Sum_probs=206.2
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHH-HHHHHHHHHh-C---CC----hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc
Q 021040 19 QPVGRWSVLYYGSGHMLNDITAACWF-TYLLLFLTDI-G---LS----PRGAAAVMLSGQIADGFATIFIGELIDRFGHF 89 (318)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~~-g---ls----~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr 89 (318)
++...+....|.+-+.+++....++. .++|+|+++. + .+ .+..|...+++.+..++..|+.|.++|+.|+|
T Consensus 9 ~~~~~~~~~sWilyD~~~~p~~~ivtt~ifply~~~~~~~~g~~~~~~~a~~gy~~aia~llia~LapiLG~iaD~~g~R 88 (438)
T COG2270 9 MPKLRKGIKSWILYDWGSSPFFAIVTTFIFPLYFTSVAGAGGVDPASSTAYWGYASAIAGLLIALLAPILGTIADYPGPR 88 (438)
T ss_pred cccccccceeEEEeeccCCceeeeeeeehhHHHHHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCc
Confidence 33445556778888877776655544 5789999984 2 23 36788899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH
Q 021040 90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN 169 (318)
Q Consensus 90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~ 169 (318)
|+++.....+..++...+|+ +| +.+.++..+.+ .++..+++...++.++++.+++++ +++-++.++...
T Consensus 89 k~~~~~f~~i~i~~~~~L~~--i~-----~~s~~~~~l~~---~il~~i~~~~s~Vfyds~L~~~~~-k~~~~riS~lg~ 157 (438)
T COG2270 89 KKFFGFFTAIGIISTFLLWF--IP-----PGSYLLLLLLF---LILASIGFEFSNVFYDSMLPRLTT-KDNMGRISGLGW 157 (438)
T ss_pred chHHHHHHHHHHHHHHHHHH--hC-----CCchHHHHHHH---HHHHHHhcchhheehhhHhhhhcC-ccccCccccccc
Confidence 99887777777777776664 33 21233332222 245667888889999999999875 345566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc---------cCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc-cc-----C
Q 021040 170 AFTMVANLSLYAIAFIVFSVST---------AKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-GL-----R 234 (318)
Q Consensus 170 ~~~~~g~~~~~~~~~~l~~~~~---------~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~-~~-----~ 234 (318)
...++|+.+..++........+ +.+++| ...-|..+.+.++...+..+..+..+||.++.. ++ +
T Consensus 158 ~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~~~~~~~~l~~ 236 (438)
T COG2270 158 ALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPAD-GEDVRITGLLAALWWLLFALPMILNVHDAEKISSPPPTALRN 236 (438)
T ss_pred ccccccchHHHHHHHHHHhcccccceeEEeeccCccc-cccchhHHHHHHHHHHHHHhHHHhcccccccccccchHHHHH
Confidence 6667776654443311111100 011122 245677778888888888888888888865332 11 1
Q ss_pred CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040 235 GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY 314 (318)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~ 314 (318)
.-++.++++|++.+++++...++++++.+-+.+...+.-..|..+.+|++..++..+.....+.+++++++.+++.+|+-
T Consensus 237 g~k~L~~t~k~i~~~~~i~~FLiA~~~~~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg 316 (438)
T COG2270 237 GFKELKSTFKEIRGRKNLVLFLIARFFYIDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFG 316 (438)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 12345577888889999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred h
Q 021040 315 S 315 (318)
Q Consensus 315 ~ 315 (318)
+
T Consensus 317 ~ 317 (438)
T COG2270 317 S 317 (438)
T ss_pred C
Confidence 4
No 84
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.74 E-value=1.9e-15 Score=144.37 Aligned_cols=178 Identities=10% Similarity=-0.069 Sum_probs=126.6
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHH
Q 021040 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVA 101 (318)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~ 101 (318)
+..+...+..+.....++...++++.|+++. |++.++.+++...+.....+..++.|+++|| +||||. +.+|.++++
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~-~~~g~~~~~ 92 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRT-IVLGAIVLA 92 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHH-HHHHHHHHH
Confidence 3344444556777788888999999999875 9999999999999999999999999999999 999999 567888888
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-chhHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLY 180 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~ 180 (318)
++...++. ..+ .....++. ..+.++|.+...+...+++.|..++++ +|++..++.+.+.++|..+++
T Consensus 93 ~g~~~~~~-------~~~-~~~ll~~~----~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~ 160 (489)
T PRK10207 93 IGYFMTGM-------SLL-KPDLIFIA----LGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISL 160 (489)
T ss_pred HHHHHHHH-------hcc-chhHHHHH----HHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHH
Confidence 88665542 111 11111111 234567777777777788999886544 457788889999999998887
Q ss_pred HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (318)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 225 (318)
.+++.+... .+|+|.|++.++ +.+..++.+...+
T Consensus 161 ~l~g~l~~~----------~gw~~~F~i~~i-~~~~~~~~~~~~~ 194 (489)
T PRK10207 161 SLAPVIADK----------FGYSVTYNLCGA-GLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHHh----------hChHHHHHHHHH-HHHHHHHHHHHcc
Confidence 776555432 468988877543 3444443333333
No 85
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.72 E-value=6.8e-16 Score=145.76 Aligned_cols=153 Identities=15% Similarity=-0.014 Sum_probs=103.3
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040 56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (318)
Q Consensus 56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (318)
.+..+.|++.+++.+...+++|+.|+++||+||||. +..+.++.+++..+... .+ ...+.+.. ++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~----~~~r~l 136 (481)
T TIGR00879 68 YSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKS-LLIIALLFVIGAILMGL--AA----FALSVEML----IVGRVL 136 (481)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHH-HHHHHHHHHHHHHHHHH--hc----cccchHHH----HHHHHH
Confidence 448999999999999999999999999999999988 45677777666554421 11 11111112 222345
Q ss_pred HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (318)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 215 (318)
.+++.+...+...+++.|..+ +++|+++.++.+.+..+|..+++.++ ....... ...+||+.+++.++..++
T Consensus 137 ~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~------~~~~w~~~f~~~~~~~~~ 208 (481)
T TIGR00879 137 LGIGVGIASALVPMYLSEIAP-KALRGALTSLYQLAITFGILVAYGFG-SGKVSLN------NTLGWRIPLGLQLIPAGL 208 (481)
T ss_pred HHhhhhHHHhHHHHHHHccCC-hhhhhhhhhHHHHHHHHHHHHHHHHH-HHhhcCC------CCccHHHHHHHHHHHHHH
Confidence 777777777777888899876 57899999998888888887766554 0001111 135799998775544443
Q ss_pred HHHHHHhcccccc
Q 021040 216 FVGIFLSRTEEPR 228 (318)
Q Consensus 216 ~~~~~~~~~~e~~ 228 (318)
.++..+++||++
T Consensus 209 -~~~~~~~l~~~~ 220 (481)
T TIGR00879 209 -LFLGLFFLPESP 220 (481)
T ss_pred -HHHHHhcCCCCh
Confidence 344445667753
No 86
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.72 E-value=4.8e-15 Score=141.16 Aligned_cols=166 Identities=14% Similarity=0.067 Sum_probs=110.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC--CCCcccCccchhHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC--MPCRILSTSTLKVETISYCVF 132 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 132 (318)
|.++.+.|++.+++.+..++++++.|+++||+||||++ ..+.++.+++......+. ......++ ......+.+.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~-~~~~~l~~i~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~ 126 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSL-KIAAVLFFISALGSAWPEFGFTSIGPDN---TGYVPEFVIY 126 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHhhccccccccccc---hhHHHHHHHH
Confidence 78899999999999999999999999999999999995 567666666654332100 00000011 1112223344
Q ss_pred HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHH
Q 021040 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFI 212 (318)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 212 (318)
+++.|++.+...+...++++|.++ +++|+++.+..+.+..+|.++++.++..+...... ......+|||.+++.++.
T Consensus 127 R~l~G~~~g~~~~~~~~~i~e~~~-~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~--~~~~~~gWr~~f~~~~~~ 203 (479)
T PRK10077 127 RIIGGIGVGLASMLSPMYIAEIAP-AHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDA--SWLNTDGWRYMFASEAIP 203 (479)
T ss_pred HHHHhhhHhHHhhHHHHHHHhhCC-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcc--cccccCChHHHHHHHHHH
Confidence 456788888888888889999986 47899999998888888877765544333211000 000125799998877766
Q ss_pred HHHHHHHHHhcccccc
Q 021040 213 GCCFVGIFLSRTEEPR 228 (318)
Q Consensus 213 ~~l~~~~~~~~~~e~~ 228 (318)
.++..+ ..+++||++
T Consensus 204 ~~~~~~-~~~~l~~s~ 218 (479)
T PRK10077 204 ALLFLM-LLYFVPETP 218 (479)
T ss_pred HHHHHH-HHHcCCCCc
Confidence 666544 356678865
No 87
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1e-18 Score=147.16 Aligned_cols=241 Identities=45% Similarity=0.806 Sum_probs=172.6
Q ss_pred CCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh---------
Q 021040 14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID--------- 84 (318)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD--------- 84 (318)
-||..++.++++.+.||.|++.|++..+.+.+|+..|++++|+++....+++.++.+.+++..|+.|..+|
T Consensus 7 eDPstkPigr~svf~yGvGHmlNDitAScWFTYlllfltqiglsp~~~AmlML~GQVtda~st~ftGi~~d~nll~~~id 86 (412)
T KOG4830|consen 7 EDPSTKPIGRTSVFAYGVGHMLNDITASCWFTYLLLFLTQIGLSPSSRAMLMLIGQVTDAISTPFTGIFSDSNLLPACID 86 (412)
T ss_pred CCCCCCcccceeeeeechhHHHhhHHHHHHHHHHHHHHHHhcCCcchhHHHHHhhHHHHHHhcccccccccccccHHHhh
Confidence 45788899999999999999999999999999999999999999999999999999999999999997776
Q ss_pred hccCchHHHHHHHHHHHHHHHHHhC--CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchh
Q 021040 85 RFGHFKIWHGAGSVLVAVSFSSVFG--GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRV 162 (318)
Q Consensus 85 r~Grr~~~l~~g~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~ 162 (318)
|+|||+.|..+|.++..+++...|. .+..|... .+.+.....|.+...++|++++.
T Consensus 87 r~G~~~~wh~~gt~lVslSf~~ifg~a~iF~~~~~--~s~vanlglyaialvVFgv~~A~-------------------- 144 (412)
T KOG4830|consen 87 RIGRRMSWHLIGTVLVSLSFPMIFGFAKIFLCKST--TSEVANLGLYAIALVVFGVGWAS-------------------- 144 (412)
T ss_pred hhcceeeeeecccEEEEEechhhcCceeEEeeccH--HHHHHHhHHHHHHhheeeeeeec--------------------
Confidence 9999999988887766555443331 00000000 00111111111100111111110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHH
Q 021040 163 VLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARIS 242 (318)
Q Consensus 163 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~ 242 (318)
...+....+||..+....+++..+++.+.+.||++..-..++....+-.
T Consensus 145 -------------------------------~ke~tea~~R~~~~~~v~lG~~~~~vF~~~TrEP~~~~~~~~s~~~Rm~ 193 (412)
T KOG4830|consen 145 -------------------------------VKESTEALIRLAGWLVVVLGITVAFVFYAFTREPTNSFSSDASELVRMH 193 (412)
T ss_pred -------------------------------ccccHHHHHHHhhhheeeeceeEEEEEeecccCcccccCcchhhhhccc
Confidence 0112234466666554445554555556677887643222233334556
Q ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHH
Q 021040 243 WAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQ 307 (318)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~ 307 (318)
|...+++-.+.+....|++.....+..+.|+++|..+..+++++..+++|++.+++++..+.+..
T Consensus 194 W~~WF~~v~~YQiAllYmLsRL~iNiSQaYlaFfviddlqm~qsakAllP~v~Yl~SF~VS~v~~ 258 (412)
T KOG4830|consen 194 WTSWFGHVQFYQIALLYMLSRLYINISQAYLAFFVIDDLQMEQSAKALLPMVAYLSSFSVSMVNS 258 (412)
T ss_pred chhhhhhhHHHHHHHHHHHHHHHhhhhhhheeeEEeehhhHHHHHhhhhHHHHHHhhhhHHhhcc
Confidence 77789999999999999999999999999999999999999999999999999999998887654
No 88
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.70 E-value=2.8e-14 Score=136.06 Aligned_cols=165 Identities=12% Similarity=-0.058 Sum_probs=121.3
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHH---hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTD---IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAV 102 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~---~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i 102 (318)
+...+..+.+...++...++++.|+++ .|++..++|++.+.+.+...+++++.|+++|| +||||. +.++.++.++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~-l~~~~~~~~~ 91 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKT-MVLGGIVLML 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHH-HHHHHHHHHH
Confidence 344456677788888899999999986 59999999999999999999999999999999 899998 5678888777
Q ss_pred HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc--chhHHHHHHHHHHHHHHHHHH
Q 021040 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST--SRVVLTSCRNAFTMVANLSLY 180 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~R~~~~~~~~~~~~~g~~~~~ 180 (318)
+...+.. .+ +.....+. ..+.+++.+...+...++++|..++++ +|+++.++.+...++|.++++
T Consensus 92 g~~~~~~-------~~--~~~~~~~~----~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~ 158 (475)
T TIGR00924 92 GHFMLAM-------SI--YPDLIFYG----LGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISP 158 (475)
T ss_pred HHHHHHh-------cc--cHhHHHHH----HHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHH
Confidence 7654431 11 12211221 134566777666677788888876432 488888999999999998887
Q ss_pred HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHH
Q 021040 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCC 215 (318)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l 215 (318)
.+++.+.. ..+|++.+.+.++..++
T Consensus 159 ~l~g~l~~----------~~g~~~~f~~~~~~~~~ 183 (475)
T TIGR00924 159 LLAGVIAE----------NYGYHVGFNLAAVGMVI 183 (475)
T ss_pred HHHHHHHH----------hcChHHHHHHHHHHHHH
Confidence 76654432 24688888776644433
No 89
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.70 E-value=1.7e-14 Score=138.57 Aligned_cols=164 Identities=17% Similarity=0.132 Sum_probs=108.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (318)
..+..+.+++.+...+...+++++.|+++||+|||+. +.++.++..++...... .+ +.........+.+.++
T Consensus 52 ~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~-~~~~~~~~~v~~~~~~~--~~-----~~~~~~~~~~~~~~r~ 123 (502)
T TIGR00887 52 PLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRV-YGMELIIMIIATVASGL--SP-----GSSPKSVMATLCFWRF 123 (502)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHHHHHHHH--cc-----CcccchHHHHHHHHHH
Confidence 3566788999999999999999999999999999998 45676666666544321 11 1111000112333345
Q ss_pred HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-ccc------------chhHH
Q 021040 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-THA------------DLENQ 201 (318)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~~~------------~~~~~ 201 (318)
+.+++.+...+....++.|.+| +++|+++.+..+....+|.++++.++..+...+... +.. ....+
T Consensus 124 l~G~~~g~~~~~~~~~~~e~~p-~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (502)
T TIGR00887 124 WLGVGIGGDYPLSAIITSEFAT-KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYM 202 (502)
T ss_pred HHHHHHhhhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhccc
Confidence 6778888877777889999886 589999999998888888888777665444322110 000 00136
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 202 YRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
||+.+.+.++.+++ .++..+++||++
T Consensus 203 WR~~~~~~~ip~~i-~~~~~~~lpESp 228 (502)
T TIGR00887 203 WRILIGFGAVPALL-ALYFRLTIPETP 228 (502)
T ss_pred HHHHHHHHHHHHHH-HHHHHHhCCCCH
Confidence 88888666555544 344456789874
No 90
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.70 E-value=1.2e-14 Score=136.32 Aligned_cols=248 Identities=9% Similarity=0.002 Sum_probs=140.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+..-..+.++.+++++++++. |++..++|++.++..+...+++|+.|.++||+||||+.+.++.+...++.....
T Consensus 11 ~~~~~~~~~~~~~~l~~~l~~~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~--- 87 (418)
T TIGR00889 11 SFLQWFIWGSWLVTLGSYMSKTLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA--- 87 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---
Confidence 3444456777889999999885 999999999999999999999999999999998766556666665555443222
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh----cc----ccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM----VN----CITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~----~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
+.+ +.+..+..+ ++.+++.+...+..+++ .. |... ...|.+..+ .+|.++++.++
T Consensus 88 ----~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~-~~~~~r~~G------~lG~~ig~~l~ 150 (418)
T TIGR00889 88 ----QVT--TPAGMFPVL----LANSLAYMPTIALTNSISYANLPQAGLDVVT-DFPPIRVMG------TIGFIAAMWAV 150 (418)
T ss_pred ----Hhc--CHHHHHHHH----HHHHHHHccHHHHHHHHHHHHHhhcCCCchh-cCCCeeeeh------hHHHHHHHHHH
Confidence 111 122222222 23344443332222222 21 2222 223333332 34555554443
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCC---chHHHHHHHHhcHHHHHHHHHHH
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNS---HARISWAYWFKKILYYQVALVYM 260 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 260 (318)
+.+ .. ...|. .+++.+++.++..++ .+.+||++++++++++. ....+.++++|+|+++.+.+..+
T Consensus 151 g~l----~~------~~~~~-~f~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 218 (418)
T TIGR00889 151 SLL----DI------ELSNI-QLYITAGSSALLGVF-ALTLPDIPVAKSTAKMSIKVMLGLDAFILFKNKRMAIFFFFSM 218 (418)
T ss_pred HHh----cc------cchhH-HHHHHHHHHHHHHHH-HhcCCCCCCCccccccCHHHHhhhhHHHHhcCCCeeeHHHHHH
Confidence 322 11 11233 244444444444433 45678764322111111 11123467889999888887777
Q ss_pred HHHHHHHHHHHHhHHhhhhcccccc--------chhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 261 LTRLVVNVSQAYLAFYVINDLRMGQ--------SAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 261 ~~~~~~~~~~~~~~~yl~~~~g~~~--------~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+..........+++.|+++. |.++ +..+....+..+..+++.+..+++.||.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~ 278 (418)
T TIGR00889 219 LLGAPLQITNIFGNGFLHEF-GRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRF 278 (418)
T ss_pred HHHhHHHHHHHhHHHHHHHh-cccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77776666778888888763 4332 2334444444555556666666666654
No 91
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.69 E-value=3.1e-14 Score=132.34 Aligned_cols=254 Identities=13% Similarity=0.049 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
-..+..+.+|++.|+++.|+|..|+|.++++..+...+.+|++|.++||++++|..+.+..++.++.+.....
T Consensus 15 f~~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~------- 87 (400)
T PF03825_consen 15 FFAYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF------- 87 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH-------
Confidence 3456667799999999999999999999999999999999999999999987666565555555554433221
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (318)
. .+.+..+... .++.+.+....+-.+++.-+... +++......|.++ .+|.++++......+....+
T Consensus 88 ~--~~f~~~~~~~----~l~~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwG-SiGf~~~~~~~~~~~~~~~~---- 154 (400)
T PF03825_consen 88 S--SSFWWLFVIM----LLFSFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWG-SIGFIVAALAFGGLLGGYLG---- 154 (400)
T ss_pred h--ccHHHHHHHH----HHHHHHHccHHHHHHHHHHHHcc--cccCCCCcchhhh-hHHHHHHHHHHHHHHHhhhc----
Confidence 1 1223222221 23445555544445555544332 2233334445444 34554443321111211110
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC--CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhH
Q 021040 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLR--GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLA 274 (318)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (318)
.....+.+++.+....+..... +..|+.+.+++++ .++....+..+++|||+++...+..++.+.......+|.+
T Consensus 155 --~~~~~~~~~i~~~~~~ll~~~~-l~lp~~~~~~~~~~~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~~~~f~~ 231 (400)
T PF03825_consen 155 --ISGTSLIFYIAAILSLLLAGFA-LFLPKTPPKRSAKESVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAAYYTFFS 231 (400)
T ss_pred --cccccHHHHHHHHHHHHHHHHH-HhCCCCccccccCCCcccccchHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122233444444443333222 3345543221111 1122223445799999999988888888888889999999
Q ss_pred HhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 275 FYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 275 ~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.|+++.-|.+....+..-.+..++=++.-...+|+-+|.
T Consensus 232 ~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~ 270 (400)
T PF03825_consen 232 IYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRF 270 (400)
T ss_pred HHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999998666554444333343445556666667776665
No 92
>TIGR00898 2A0119 cation transport protein.
Probab=99.68 E-value=8.2e-15 Score=140.67 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=145.4
Q ss_pred HHHhCCC---hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHH
Q 021040 51 LTDIGLS---PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI 127 (318)
Q Consensus 51 l~~~gls---~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (318)
.+|.+++ +.+.+++.+++.++..+++++.|.++||+||||. +.++.++.+++...... .+ +....
T Consensus 116 ~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~-~~~~~~~~~i~~~~~~~-------~~--~~~~~-- 183 (505)
T TIGR00898 116 VTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKV-LLLSTLVTAVSGVLTAF-------SP--NYTVF-- 183 (505)
T ss_pred EEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHH-HHHHHHHHHHHHHHHHH-------cc--cHHHH--
Confidence 3445888 8999999999999999999999999999999998 45677766666543321 22 12222
Q ss_pred HHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHH
Q 021040 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 207 (318)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (318)
.+.+++.+++.+...+...+++.|..+ +++|+.+.++.+.+..+|.++++.+ +.+. .+||+.++
T Consensus 184 --~~~r~l~G~~~~~~~~~~~~~~~e~~~-~~~r~~~~~~~~~~~~~g~~~~~~~-----~~~~--------~~wr~~~~ 247 (505)
T TIGR00898 184 --LVFRLLVGMGIGGIWVQAVVLNTEFLP-KKQRAIVGTLIQVFFSLGLVLLPLV-----AYFI--------PDWRWLQL 247 (505)
T ss_pred --HHHHHHHHhhccchHHHHHHHhheecC-hhhhHHHHHHHHHHHHHHHHHHHHH-----HHHh--------hHHHHHHH
Confidence 233345777777777777888899886 5789888888777766666554433 2211 24999988
Q ss_pred HHHHHHHHHHHHHHhcccccccc-----c-cc-------------------------CC---CCchHHHHHHHHhcHHHH
Q 021040 208 SSIFIGCCFVGIFLSRTEEPRLK-----M-GL-------------------------RG---NSHARISWAYWFKKILYY 253 (318)
Q Consensus 208 i~~~~~~l~~~~~~~~~~e~~~~-----~-~~-------------------------~~---~~~~~~~~~~~~~~~~~~ 253 (318)
+.+++.++..+.. +++||+++. + ++ ++ ++..+..+++++|+|.++
T Consensus 248 ~~~i~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 326 (505)
T TIGR00898 248 AVSLPTFLFFLLS-WFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLR 326 (505)
T ss_pred HHHHHHHHHHHHH-HhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhhhhhccCCCcHHHHhCChHHH
Confidence 8877766655544 667876420 0 00 00 000113567888999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhccccccchh-hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAK-ALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~-~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
...+...+.++........++. ..+..+.+.... ........++.++++.+.||+++|.
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~ 386 (505)
T TIGR00898 327 KTTLCLMMLWFTTAFSYYGLVL-DLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRY 386 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 7766655555443332222222 233334443222 2223344456777778888877663
No 93
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.67 E-value=1.4e-14 Score=133.14 Aligned_cols=269 Identities=10% Similarity=0.064 Sum_probs=144.2
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH-
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV- 100 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~- 100 (318)
.+..+.++...+..-..+++..+|++.|++|. |+|++++|.++++..+...+.+|+.|.++||.|.||..+..-.++.
T Consensus 6 ~~~~~~~s~~~f~~Ff~~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~ 85 (412)
T PF01306_consen 6 NKNYWWLSLFYFFYFFIWGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLL 85 (412)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHH
Confidence 33445556666666677889999999999985 9999999999999999999999999999999997776443322222
Q ss_pred HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSL 179 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~ 179 (318)
..+-.+.|. ..| +-+. +. .+..++..+..++++....+...++..+.... .-|-|+ .|.++ .+|.+++
T Consensus 86 l~~pff~~v-~~p--ll~~-n~---~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr~~~feYG~---~R~wG-Sig~ai~ 154 (412)
T PF01306_consen 86 LFGPFFIYV-FGP--LLQS-NF---WLGAIIGGIYLGLVFNAGVPLSEAYAERVSRRNGFEYGR---ARMWG-SIGFAIA 154 (412)
T ss_dssp TCHHHHHHT-HHH--HHHT-T----HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHHHHSS-HHH---HHHHH-HHHHHHH
T ss_pred HHHHHHHHH-HHH--HHHH-HH---HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHhcCCcch---HHHHh-hHHHHHH
Confidence 122222221 011 0001 11 11111111112333333344444454333211 112233 34444 3455566
Q ss_pred HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc---c-cC--CCCchHHHHHHHHhcHHHH
Q 021040 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---G-LR--GNSHARISWAYWFKKILYY 253 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~-~~--~~~~~~~~~~~~~~~~~~~ 253 (318)
+.+++.+.+. +-...+++....+++..++..+.-||.+++. + ++ +++...++..+++|+|++|
T Consensus 155 s~~~G~L~~i-----------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~fw 223 (412)
T PF01306_consen 155 SLLAGILFNI-----------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALGAKKDKVSLKDVLSLFKMRNFW 223 (412)
T ss_dssp HHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSSS------HHHHHHHTTSHHHH
T ss_pred HHHhheeeee-----------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccccCCCCCcHHHHHHHhcchhHH
Confidence 6666666642 1233444444444444333333322322111 1 11 1111234567899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhhccccc---cchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 254 QVALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+++........++..+..++.|.....+-. +...+.+-.+.-+.=++.-.+.|++-+|+
T Consensus 224 ~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~ri 286 (412)
T PF01306_consen 224 FFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRI 286 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9888777777788888888888888765533 23344444444444455555555555553
No 94
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.66 E-value=7.5e-14 Score=138.29 Aligned_cols=170 Identities=13% Similarity=-0.024 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
....+|....+.|++..+.+++.++..++.+++++++|+++||+|||+.+ +++.++.+++.++.. +.+ +.
T Consensus 186 is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~l-ii~lil~~i~~ll~a-------fa~--s~ 255 (742)
T TIGR01299 186 VGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCL-LICLSVNGFFAFFSS-------FVQ--GY 255 (742)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHH-------HHh--hH
Confidence 33344444455699999999999999999999999999999999999984 556666665544332 111 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC---cccchh
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK---THADLE 199 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~---~~~~~~ 199 (318)
..+ .+.+++.+++.+...+...+++.|..+ +++|++..++.+.+..+|.++++.++..++..++-. +.....
T Consensus 256 ~~l----lv~R~l~G~g~g~~~p~~~~~isE~~p-~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~ 330 (742)
T TIGR01299 256 GFF----LFCRLLSGFGIGGAIPIVFSYFAEFLA-QEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQF 330 (742)
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccccc
Confidence 222 223346777777777777888899886 578999999888888888888777665554322100 000012
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
.+||+.+++.++.+++. ++..+++||++
T Consensus 331 ~gWR~l~~i~~lp~ll~-ll~~~~lPESP 358 (742)
T TIGR01299 331 HSWRVFVIVCAFPCVFA-IGALTFMPESP 358 (742)
T ss_pred ccHHHHHHHHHHHHHHH-HHHHHHcCCCH
Confidence 47998887766555443 45556788874
No 95
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.65 E-value=3.7e-13 Score=121.25 Aligned_cols=255 Identities=12% Similarity=0.048 Sum_probs=166.6
Q ss_pred HHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 44 ~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
+-.+.|.+++. +++..+++++...+..+..+.+.+.|++.+|+|+|+. +..|..+.+++....| |.+ ....
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~g-i~lgL~l~avg~~lF~----pAa--~~~~- 103 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAG-IVLGLLLYAVGAALFW----PAA--SSKS- 103 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHH-HHHHHHHHHHHHHHHh----hhh--hhhh-
Confidence 34566777776 9999999999999999999999999999999999999 6789999999866443 211 1111
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hccCcc-----
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV--STAKTH----- 195 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~~~----- 195 (318)
. ..++...++.+.|.+..++..++++..+.++ ++...-....+.++.+|+++++.++..++.. ....+.
T Consensus 104 y---~~FL~~lFila~Gi~~LetaaNp~v~~lg~~-~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~ 179 (422)
T COG0738 104 Y---GFFLVALFILASGIGLLETAANPYVTLLGKP-ESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA 179 (422)
T ss_pred H---HHHHHHHHHHHhhhHHHHhccchHHHHhCCc-hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence 1 1222222456677788888889999888754 3333445667788889999888887766641 100000
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchH-HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 196 --ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHAR-ISWAYWFKKILYYQVALVYMLTRLVVNVSQAY 272 (318)
Q Consensus 196 --~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (318)
+.....+++++...+...+++++.. ...|-++.+++++++.+.. ....+++|||.++...+..++.-.......++
T Consensus 180 ~~~~~~~~v~~pYl~~~~~lvll~v~~-~~~k~p~~~~~~~~~~~~~~~~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsf 258 (422)
T COG0738 180 IKGADASSVQFPYLILAGLLVLLAVLI-LLSKLPDLQVAAPSLGASGSAGLSSLFQNKHLRLGVLAIFLYVGAEVAIGSF 258 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH-HhccCCcCCcccccccccccchHHHHHhChHHHHHHHHHHHHHhHHHHHHHH
Confidence 0012346667766665555554433 2233222222111111111 15678999999999999999888888999999
Q ss_pred hHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 273 LAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL 311 (318)
Q Consensus 273 ~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~ 311 (318)
++.|++|..|.+..+.........++.+++-++..++-+
T Consensus 259 l~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~ 297 (422)
T COG0738 259 LVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMS 297 (422)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888765544444444444444444333333
No 96
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.62 E-value=2.5e-13 Score=123.24 Aligned_cols=250 Identities=10% Similarity=0.051 Sum_probs=167.7
Q ss_pred HHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc-----CchHHHHHHHHHHHHHHHHHhCCCCCCcccC-----cc
Q 021040 51 LTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----TS 120 (318)
Q Consensus 51 l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G-----rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-----~~ 120 (318)
..|++++...++..++...+. ....|.+|+.||+.+ ||.||++.|.++...+....-. ....+.. +.
T Consensus 7 IvEL~vpA~lv~~lval~~~~-ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~--a~~~l~~~~~~~~~ 83 (403)
T PF03209_consen 7 IVELGVPAWLVALLVALHYLV-APLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPF--ALLLLAESGQQSSG 83 (403)
T ss_pred HHHhccHHHHHHHHHHHHHHH-HHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHH--HHHHHccccccccc
Confidence 456799999999998777665 457999999999988 9999999998887775432210 0000111 01
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (318)
+.+.-.....+...++|+|.+....++.++..|.++ +|+|+++.++.+.+..+|.++++.+.+.++..+. ..
T Consensus 84 ~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~-e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s-------~~ 155 (403)
T PF03209_consen 84 PFWLGLALAALAFLLYGLGVHASGTSFLALLADLAP-EERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS-------PE 155 (403)
T ss_pred ccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCC-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC-------HH
Confidence 111111222222346889999999999999999986 5899999999999989998888776665553221 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccc---ccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 021040 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM---GLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYV 277 (318)
Q Consensus 201 ~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl 277 (318)
.....+-..+++.++..++..+.++.+..+. +++++.++++.++++.++|+-+.+...-++..++++.=+..+-+|-
T Consensus 156 rL~~v~~~~a~i~~~l~~ia~wg~E~r~~~~~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a~~~QD~iLEPyg 235 (403)
T PF03209_consen 156 RLIQVIQGVALIALLLNLIALWGQEPRRSRRAAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLAFFMQDVILEPYG 235 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcccccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHHHHhhHHHcCCch
Confidence 2222333333444444455545443222211 2345567889999999999988887777778888888888899999
Q ss_pred hhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 278 INDLRMGQSAKALVPAIIYICSFIVSILLQVISL 311 (318)
Q Consensus 278 ~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~ 311 (318)
-+.+|++..+..-+....-.+.+++-.+.+++..
T Consensus 236 g~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~ 269 (403)
T PF03209_consen 236 GEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLS 269 (403)
T ss_pred hHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999877666665555555555555554433
No 97
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.61 E-value=4.4e-14 Score=133.69 Aligned_cols=236 Identities=12% Similarity=0.029 Sum_probs=164.5
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (318)
.++...+.+.+.+++.++.++++++.|.+.||+.-.+. +....+.+.+..++.. .. .+... +++.+
T Consensus 76 l~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~-l~~~~~~w~~~~~~~~-------~~--~s~~~----~ialr 141 (495)
T KOG2533|consen 76 LKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKG-LSVSGILWGLFGFLTA-------AV--HSFPG----LIALR 141 (495)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHH-HHHHHHHHHHHHHHHH-------HH--hhhHH----HHHHH
Confidence 36778899999999999999999999999999995444 3322233222221111 01 11222 23334
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG 213 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 213 (318)
++.|+.-+..-++...++..... ++||+...++.+....+|++.++.+...+...-+ .....+|||.|++.|++.
T Consensus 142 ~llGl~es~~wP~~~~~lg~wy~-~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~----~~~~~gW~~~FiI~G~i~ 216 (495)
T KOG2533|consen 142 FLLGLFESGGWPGVVAILGNWYG-KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNG----SGGLAGWRWLFIIEGVIT 216 (495)
T ss_pred HHHHHHhcccchHHHHHHHhhcC-hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcC----CCCcCCceeehhHHHHHH
Confidence 55777777777677777776664 6899999999999999999888777654433111 112468999999999999
Q ss_pred HHHHHHHHhccccccccc-----cc----------C-----CCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 214 CCFVGIFLSRTEEPRLKM-----GL----------R-----GNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYL 273 (318)
Q Consensus 214 ~l~~~~~~~~~~e~~~~~-----~~----------~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (318)
++..+++++++|+.+.+. ++ + +++..+..+++.+|+|..|.+.+.+++.....++..+|+
T Consensus 217 ~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~l 296 (495)
T KOG2533|consen 217 LVLGIVVFFFLPDNPSKAWFLTDEEKELVVERLRESPSGGIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWL 296 (495)
T ss_pred HHHHheEEEEecCChhhccccchHHHHHHHHHHHhccCCCcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHH
Confidence 999999988888765411 10 0 011345678999999999999999999999999999999
Q ss_pred HHhhhhccccccchhhHHHHHHH----HHHHHHHHHHHH
Q 021040 274 AFYVINDLRMGQSAKALVPAIIY----ICSFIVSILLQV 308 (318)
Q Consensus 274 ~~yl~~~~g~~~~~~~~~~~~~~----v~~~i~~~~~~~ 308 (318)
|.|+++..|.+......++.... ++.++++++.||
T Consensus 297 pl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr 335 (495)
T KOG2533|consen 297 PLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDR 335 (495)
T ss_pred HHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHH
Confidence 99999977787654444443334 455555555555
No 98
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.9e-15 Score=133.29 Aligned_cols=229 Identities=13% Similarity=0.055 Sum_probs=165.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAA 134 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (318)
+-+.+++|++++...+.+.+.+|+.|.+.||.|+|-| +++|...+..+..+.. +. ++...+++ .+.
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ip-m~~Gl~vmf~sTilFa-------fg--~sy~~l~v----AR~ 167 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIP-MVAGLFVMFLSTILFA-------FG--NSYPMLFV----ARS 167 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccH-HHHHHHHHHHHHHHHH-------Hc--chhHHHHH----HHH
Confidence 5678899999999999999999999999999999999 6788888777765332 11 23333333 335
Q ss_pred HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGC 214 (318)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 214 (318)
+.++|.+...+...++++|..++++||+++.|..-.+..+|-++++-+++.+... .+++..|++.+++.+
T Consensus 168 LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~----------~Gk~aPFlVL~~v~L 237 (464)
T KOG3764|consen 168 LQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEF----------AGKSAPFLVLAIVLL 237 (464)
T ss_pred HhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhh----------cCCcCcHHHHHHHHH
Confidence 6778999888888999999999999999999999888888888877776666543 356778889888887
Q ss_pred HHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccch--hhHHH
Q 021040 215 CFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA--KALVP 292 (318)
Q Consensus 215 l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~--~~~~~ 292 (318)
+-..+-++.++.++..+++ ......+++++++|..+....+--.++........-++.+..|.+..+..+ ...+|
T Consensus 238 ld~~L~l~vi~p~~~~~~~---~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp 314 (464)
T KOG3764|consen 238 LDGALQLLVIEPTEMDPDS---TEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLP 314 (464)
T ss_pred HHHHHHHheeCccccCccc---cccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecc
Confidence 7776665555443322211 112234788999998887777777777777777888888888888844423 33444
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 021040 293 AIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 293 ~~~~v~~~i~~~~~~~i~~~ 312 (318)
. .+..+++..+.+++.+|
T Consensus 315 ~--~~~y~ig~~lfg~la~k 332 (464)
T KOG3764|consen 315 A--SLSYAIGTNLFGKLADK 332 (464)
T ss_pred c--ccchhccCchHHHHHHh
Confidence 3 33444445555555544
No 99
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.60 E-value=1.6e-12 Score=123.34 Aligned_cols=158 Identities=14% Similarity=0.005 Sum_probs=111.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-cCchHHHHHHHHHHHHHHHHHh
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSVLVAVSFSSVF 108 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-Grr~~~l~~g~~~~~i~~~~~~ 108 (318)
+..+......+....+++.|+++. |+++.+.+.+...+.....+..+++|+++||+ ||||. +.+|.++.+++...+.
T Consensus 16 ~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~-iliG~il~~lg~lll~ 94 (493)
T PRK15462 16 ALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMA-VMLGALLMAIGHVVLG 94 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHH-HHHHHHHHHHHHHHHH
Confidence 344566677777888999999885 99999999999999999999999999999999 99998 5678887777754332
Q ss_pred CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-TSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
. ... ......+.. .+..+|.+...+...++++|..+++ ++|++..++.+.+.++|+.+++.+++.+.
T Consensus 95 ~-------~~~-~~~~~~l~l----~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~ 162 (493)
T PRK15462 95 A-------SEI-HPSFLYLSL----AIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQ 162 (493)
T ss_pred H-------hhc-chhHHHHHH----HHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111 111111111 1222445555555667888988654 36888899999888888887776665543
Q ss_pred HhhccCcccchhHHHHHHHHHHHH
Q 021040 188 SVSTAKTHADLENQYRWIAYSSIF 211 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~ 211 (318)
. ..+|++.|.+.++
T Consensus 163 ~----------~~Gw~~~F~iaai 176 (493)
T PRK15462 163 E----------EYSWAMGFGLAAV 176 (493)
T ss_pred h----------hhChHHHHHHHHH
Confidence 2 2468888876554
No 100
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.56 E-value=6.2e-12 Score=116.96 Aligned_cols=260 Identities=9% Similarity=0.004 Sum_probs=153.4
Q ss_pred CCchhhhhhccc--chHHHHHHHHHHHHHHHHHHH-hCCChhH-HHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHH
Q 021040 21 VGRWSVLYYGSG--HMLNDITAACWFTYLLLFLTD-IGLSPRG-AAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAG 96 (318)
Q Consensus 21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~-~gls~~~-~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g 96 (318)
++.|++..+-++ .|..++= .-.++..+++.+ .|+|+.+ .|.+..++....++.+++.|.++||+|.|+. +..+
T Consensus 22 ~~~W~~~~~~lC~fGF~~e~R--~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~v-L~l~ 98 (511)
T TIGR00806 22 LKSWRVLVLYLCFYGFMAQFR--PGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPV-LVLQ 98 (511)
T ss_pred hcchhHHHHHHHHHHHHHHhh--chHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHH-HHHH
Confidence 345555544333 3333222 223566677775 5999999 9999999999999999999999999999987 5667
Q ss_pred HHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040 97 SVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (318)
Q Consensus 97 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (318)
.+..++...++.+ . .+ +..+.+.++++|++.+... ++..++...+| ++||++++++.+.+..+|.
T Consensus 99 ~l~Wsl~t~L~~f-------a--~S----l~~L~i~R~llGvaEA~~~-A~~syI~~WfP-~kER~ratsi~~sg~~vG~ 163 (511)
T TIGR00806 99 ALSFVCVWLLLLL-------G--TS----VWHMQLMEVFYSVTMAARI-AYSSYIFSLVP-PSRYQRAAAYSRAAVLLGV 163 (511)
T ss_pred HHHHHHHHHHHHH-------H--HH----HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCC-HHHHHHHHHHHHHHHHHHH
Confidence 7777776654421 1 11 2233444567888888777 77778888775 6899999999999999999
Q ss_pred HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc------c-----------cc--cC-C-
Q 021040 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL------K-----------MG--LR-G- 235 (318)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~------~-----------~~--~~-~- 235 (318)
++++.+++.+. .++ ...|+...++.. ...+++++.-+++|.+++ + +. ++ .
T Consensus 164 ~Ia~~L~qll~-s~g-------Wr~y~~Ln~Isl-~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~ 234 (511)
T TIGR00806 164 FLSSVLGQLLV-TLG-------WISYSTLNIISL-VFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGG 234 (511)
T ss_pred HHHHHHHHHHH-hcC-------chhHHHHHHHHH-HHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCcc
Confidence 88877765522 111 122333333322 233333333344442211 0 00 00 0
Q ss_pred -C----C--------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHH
Q 021040 236 -N----S--------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIV 302 (318)
Q Consensus 236 -~----~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~ 302 (318)
+ + .....+++..+||.++.-.+-..+...+++...+|.-.--++.-+-.+...+.+-.+..+.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~ 314 (511)
T TIGR00806 235 KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAIT 314 (511)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHH
Confidence 0 0 01234556678888777666677777777777666643333332211224444433333333334
Q ss_pred HHHHH
Q 021040 303 SILLQ 307 (318)
Q Consensus 303 ~~~~~ 307 (318)
++..+
T Consensus 315 a~~ag 319 (511)
T TIGR00806 315 SFIAG 319 (511)
T ss_pred HHHHH
Confidence 44433
No 101
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.56 E-value=3.6e-12 Score=122.36 Aligned_cols=162 Identities=10% Similarity=-0.023 Sum_probs=110.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHH
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
.+..+......+...++++.|+++. |++.++.+.+...+........++.|+++|| +|||+. +..+.++.+++...+
T Consensus 27 ~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~-~~~g~~~~~ig~~l~ 105 (500)
T PRK09584 27 FSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRV-IMLGAIVLAIGYALV 105 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHH-HHHHHHHHHHHHHHH
Confidence 3445667777788888999999775 9999999998888777777777899999999 599998 567877777775544
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-SRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
.. +++ ......+. ..+.+++.+...+...+++.|..++++ +|+++.++.+.+.++|..+++.+++.+
T Consensus 106 ~~-------~~~-~~~~l~~~----~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l 173 (500)
T PRK09584 106 AW-------SGH-DAGIVYMG----MATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWL 173 (500)
T ss_pred HH-------hcc-cHHHHHHH----HHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 21 111 11111111 134556666666666678888876433 345677778888888888877666555
Q ss_pred HHhhccCcccchhHHHHHHHHHHHHHHH
Q 021040 187 FSVSTAKTHADLENQYRWIAYSSIFIGC 214 (318)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 214 (318)
.+ ..+|++.|.+.++...
T Consensus 174 ~~----------~~g~~~~F~i~~i~~~ 191 (500)
T PRK09584 174 AA----------KYGWSVAFALSVVGML 191 (500)
T ss_pred HH----------hhCHHHHHHHHHHHHH
Confidence 43 2478988877664333
No 102
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.51 E-value=3.5e-12 Score=119.68 Aligned_cols=233 Identities=9% Similarity=0.012 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHH
Q 021040 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG 139 (318)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (318)
..+.+.+++.++.++++.+.|.++||+|||.. ++...++..++...... +- .. .+.....+. +++.|+.
T Consensus 61 lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~-l~~~~~l~~~~~~~~~~-s~---~~--~~~e~li~G----R~i~Gl~ 129 (485)
T KOG0569|consen 61 LWSLIVSIFFIGGMIGSFSSGLLADRFGRKNA-LLLSNLLAVLAALLMGL-SK---SA--PSFEMLILG----RLIVGLA 129 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHHHHHHHH-HH---Hh--hhHHHHHHH----HHHHHHH
Confidence 46677889999999999999999999999977 45565555554433211 00 01 112222333 3456666
Q ss_pred HhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 219 (318)
.+........++.|.+| .+-||......+.+..+|.+++..++.|-+ +|. ...|.+.+.+..+++++. ++
T Consensus 130 ~gl~~~~~pmyl~E~sP-~~~RG~~g~~~~~~~~~g~ll~~~~~l~~i--lGt------~~~W~~l~~~~~i~~~~~-l~ 199 (485)
T KOG0569|consen 130 CGLSTGLVPMYLTEISP-KNLRGALGTLLQIGVVIGILLGQVLGLPSL--LGT------EDLWPYLLAFPLIPALLQ-LA 199 (485)
T ss_pred hHHHHHHHHHHHhhcCh-hhhccHHHHHHHHHHHHHHHHHHHHccHHh--cCC------CcchHHHHHHHHHHHHHH-HH
Confidence 66666667778899987 478999999999998999888877665533 221 357888877766665544 44
Q ss_pred HHhccccccc------cccc------------C---------------CC--CchHHHHHHHHhcHHHHHHHHHHHHH--
Q 021040 220 FLSRTEEPRL------KMGL------------R---------------GN--SHARISWAYWFKKILYYQVALVYMLT-- 262 (318)
Q Consensus 220 ~~~~~~e~~~------~~~~------------~---------------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-- 262 (318)
...++||+|+ ++++ + ++ +....++++++|||..+......+..
T Consensus 200 ~l~~~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~ 279 (485)
T KOG0569|consen 200 LLPFLPESPKYLLIKKGDEEEARKALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSF 279 (485)
T ss_pred HHhcCCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHH
Confidence 4577898853 1110 0 00 01223578899988766654333333
Q ss_pred --HHHHHHHHHHhHHhhhhccccccch--h--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 263 --RLVVNVSQAYLAFYVINDLRMGQSA--K--ALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 263 --~~~~~~~~~~~~~yl~~~~g~~~~~--~--~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++.......++...+.+..|++... . .....+..+.++++.++.||.+||-
T Consensus 280 ~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRp 336 (485)
T KOG0569|consen 280 AQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRP 336 (485)
T ss_pred HHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcH
Confidence 3333345556667777777887642 2 2334566689999999999999873
No 103
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.51 E-value=2.6e-12 Score=122.33 Aligned_cols=252 Identities=12% Similarity=-0.006 Sum_probs=151.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc----CchHHHHHHHHHHH-HHHHHH
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG----HFKIWHGAGSVLVA-VSFSSV 107 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G----rr~~~l~~g~~~~~-i~~~~~ 107 (318)
+...+. ......+++++++. |+|+++++...+...+...+ .|++|.++||++ |||.|+.++.++.. +++..+
T Consensus 36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~-K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l 113 (468)
T TIGR00788 36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWAL-KPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL 113 (468)
T ss_pred HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 444444 55666778888875 99999999988888888777 677999999984 46777777766652 332211
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH---HHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV---LTSCRNAFTMVANLSLYAIAF 184 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~---~~~~~~~~~~~g~~~~~~~~~ 184 (318)
+ ..++ ... ... +...+.+++.+..+++..+++.|..+ ++++. ..++.+....+|.++++.+++
T Consensus 114 -----~--~~~~-~~~-~~~---~~~~l~~~~~a~~dv~~da~~~e~~~--~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 114 -----P--GKVS-SAK-VAA---AFIFLAALAKALYDVLVDSLYSERIR--ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred -----c--cccc-hHH-HHH---HHHHHHHHHHHHHHHhHHHHHhhhhh--cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 1 1111 111 111 11235667788888899999999876 23322 333333334567777777666
Q ss_pred HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc--ccccCCC----------------CchHHHHHHH
Q 021040 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL--KMGLRGN----------------SHARISWAYW 246 (318)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~--~~~~~~~----------------~~~~~~~~~~ 246 (318)
.+... .+|+..+++.+++.++. .+...+.||++. .++.+++ ++...+.++.
T Consensus 180 ~l~~~----------~~~~~~f~~~a~l~ll~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (468)
T TIGR00788 180 PLLDK----------TLTRILFLITAALLLLQ-LFVSNLSKERRAFVRPRIGTYLEMNMALLTLGVLANVKVQILGLRGA 248 (468)
T ss_pred HHHHh----------cCcchHHHHHHHHHHHH-HHHHHhcccccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 65532 35777777777666655 444566788641 1110010 1112245566
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
+|+|+++..+...++.+..........-.+..+..|.++...+.+-....++++++..+.+|+.+|
T Consensus 249 l~~~~i~~~l~fifl~~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~ 314 (468)
T TIGR00788 249 IQLLEIAKPLIFIFLSYANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKT 314 (468)
T ss_pred HhcHHHHHHHHHHHHHHhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888775554444111111111111123345678888888877777778889999988888764
No 104
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=99.49 E-value=6.2e-13 Score=121.24 Aligned_cols=160 Identities=17% Similarity=0.175 Sum_probs=119.4
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh----hccCchHHHHHHHHH
Q 021040 24 WSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID----RFGHFKIWHGAGSVL 99 (318)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD----r~Grr~~~l~~g~~~ 99 (318)
++.+......++.++.++...+|++||++++|++..+.+.+...+.+...+.||+.|..|| |||||||++..+.+.
T Consensus 32 ~~li~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~ 111 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLL 111 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHH
Confidence 5566777778899999999999999999999999999999999999999999999999999 699999999988888
Q ss_pred HHHHHHHHhC-CCCCCcccCccch---hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040 100 VAVSFSSVFG-GCMPCRILSTSTL---KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (318)
Q Consensus 100 ~~i~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g 175 (318)
.+++...+-+ .-+-..+.++... ......+++-..+.+++....+.|..++..|+..+++++.+++++...+..+|
T Consensus 112 i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avG 191 (498)
T KOG0637|consen 112 IAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVG 191 (498)
T ss_pred HHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhc
Confidence 8887654311 0000001111111 11122222222367788878888999999999865444444889888898999
Q ss_pred HHHHHHHH
Q 021040 176 NLSLYAIA 183 (318)
Q Consensus 176 ~~~~~~~~ 183 (318)
+.+|...+
T Consensus 192 nvLGY~~g 199 (498)
T KOG0637|consen 192 NVLGYALG 199 (498)
T ss_pred ceeeeecc
Confidence 98877654
No 105
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.46 E-value=9.7e-12 Score=118.77 Aligned_cols=241 Identities=16% Similarity=0.079 Sum_probs=167.2
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHH
Q 021040 48 LLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETI 127 (318)
Q Consensus 48 ~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (318)
..+.++++-+.++++++.++..-...+..|+.+.+.||+|.|.+ ++.|.++..+++.+..+ .. +.+.+++
T Consensus 70 ~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v-~i~G~~v~~~g~~lssF-------~~--~i~~l~l 139 (509)
T KOG2504|consen 70 EELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTV-MIAGGLVAALGLLLSSF-------AT--SLWQLYL 139 (509)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHH-HHHHHHHHHHHHHHHHH-------Hh--hHHHHHH
Confidence 33334458899999999999999999999999999999999988 67888888888765432 21 2343444
Q ss_pred HHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHH
Q 021040 128 SYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAY 207 (318)
Q Consensus 128 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (318)
.+ .++.|+|.++...|....+...+ +++|+.++++...++.+|..+-+ ++...+.. ..+||+..+
T Consensus 140 t~---gvi~G~G~~~~~~paiviv~~YF--~kkR~lA~Gia~~GsG~G~~~~~----~l~~~l~~------~~G~r~~~l 204 (509)
T KOG2504|consen 140 TF---GVIGGLGLGLIYLPAVVILGTYF--EKKRALATGIAVSGTGVGTVVFP----PLLKYLLS------KYGWRGALL 204 (509)
T ss_pred HH---HHHhhccchhhhcchhhhhhhHh--HHHHHHHHhhhhccCCcceeeHH----HHHHHHHH------HhCcHHHHH
Confidence 44 34677888887777766666554 47899999999888888876543 33333221 367899888
Q ss_pred HHHHHHHHHHHHHHhcccccccc------------------------c---c----cC-----------CCC-----chH
Q 021040 208 SSIFIGCCFVGIFLSRTEEPRLK------------------------M---G----LR-----------GNS-----HAR 240 (318)
Q Consensus 208 i~~~~~~l~~~~~~~~~~e~~~~------------------------~---~----~~-----------~~~-----~~~ 240 (318)
+.+.+.+-+.......-|..... . + .+ .+. ..+
T Consensus 205 ~~~~~~l~~~~~~~~~rp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (509)
T KOG2504|consen 205 IFGGISLNVLVAGALLRPLSPPKKPNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQ 284 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCCchhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchh
Confidence 88777765555554433300000 0 0 00 000 111
Q ss_pred HHH----HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 021040 241 ISW----AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLY 314 (318)
Q Consensus 241 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~ 314 (318)
... .+++|+|.|+.+.+...+..+++.....++|.|.+ ..+.++.....+..+..+...++-++.+.+.|+-+
T Consensus 285 ~~~~~~d~~ll~~~~fl~~~~~~~~~~~g~~~p~~~l~~~~~-~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~ 361 (509)
T KOG2504|consen 285 AFLSMLDLSLLKDPKFLLLALSNLFAYLGFNVPFVYLPSYAK-SLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPG 361 (509)
T ss_pred hhhhhhhHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccc
Confidence 112 58899999999999999999999999999999999 67888876666666666666777666666666544
No 106
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.45 E-value=1.1e-10 Score=103.93 Aligned_cols=240 Identities=15% Similarity=0.102 Sum_probs=165.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
+.++-.-.|.|+|.+.+|++.++..++-.+.+|+...++.|+|.+|. +..+.++.+++...=- . .+...
T Consensus 33 PLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~-l~~~Llli~~G~~iR~---~-------~~~~~ 101 (395)
T COG2807 33 PLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERS-LFLALLLIAAGILIRS---L-------GGLPL 101 (395)
T ss_pred hhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHh---c-------ccHHH
Confidence 33434434459999999999999999999999999999999999888 5677777777754221 0 01111
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (318)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (318)
++. -..+.+.+.+..++-..+++.+-+ +|+-+.+++.+.....+|+.+++.+..|+.... .+|+.
T Consensus 102 L~~----gt~l~G~gIav~nVLLPslIK~~F--pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~---------~gW~~ 166 (395)
T COG2807 102 LFL----GTLLAGAGIAVINVLLPSLIKRDF--PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS---------GGWRG 166 (395)
T ss_pred HHH----HHHHHHhhHHHHHHhhhHHHHhhc--ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh---------ccHHH
Confidence 111 123455666666776777776654 356678889988888899998888887877542 36888
Q ss_pred HHHHHHHHHHHHHHHHHhc-ccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccc
Q 021040 205 IAYSSIFIGCCFVGIFLSR-TEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRM 283 (318)
Q Consensus 205 ~~~i~~~~~~l~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~ 283 (318)
...+-+.++++..++++.- .+|. .+. .+....+-.++.|||.-|.+.+..-++++.++....|+|.++.|. |+
T Consensus 167 aL~~WAl~allAl~~WlPq~~r~~--~~~---~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~-G~ 240 (395)
T COG2807 167 ALGFWALLALLALLIWLPQALREQ--AAS---IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIVIGWLPAILIDR-GL 240 (395)
T ss_pred HHHHHHHHHHHHHHHHhhhccccc--ccc---cccccccccccccCchhHHHHHHHHhhHHHHHHHHHHHHHHHHHc-CC
Confidence 7766666666665554332 1221 111 111122224678999999998888889999999999999999985 99
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040 284 GQSAKALVPAIIYICSFIVSILLQVISLKLYSM 316 (318)
Q Consensus 284 ~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~ 316 (318)
+.++.+.+-....+.++..++..+-+.+|-.|.
T Consensus 241 sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~ 273 (395)
T COG2807 241 SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQ 273 (395)
T ss_pred CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 987776665566666677777777776665443
No 107
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.45 E-value=6.7e-11 Score=113.85 Aligned_cols=240 Identities=14% Similarity=0.097 Sum_probs=133.3
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHH
Q 021040 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVET 126 (318)
Q Consensus 47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 126 (318)
++....|+|-+ ...+|+.+...+..++..|+.|++||.||||.. .+.+.++..++.+... .+++ ..
T Consensus 67 l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~-~i~g~~l~vvG~Iv~a-------tA~~--~~--- 132 (599)
T PF06609_consen 67 LPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYF-FIIGSLLGVVGSIVCA-------TAQN--MN--- 132 (599)
T ss_pred HHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHH-HHHHHHHHHhHHHHhh-------cCCc--HH---
Confidence 34444456544 556677778889999999999999999999987 5678888888866442 1222 11
Q ss_pred HHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hccCcccchhHHHHHH
Q 021040 127 ISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV-STAKTHADLENQYRWI 205 (318)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 205 (318)
.++.-..+.++|.+..... ...++|+.+ .|.|.....+... ..++...+ ++.+.. +. ...+|||.
T Consensus 133 -~~iag~~l~GvgaG~~~~~-~~~isEl~p-~k~R~~~~~~~~~----~~i~~~~~-~~~ia~~~~------~~~~WRw~ 198 (599)
T PF06609_consen 133 -TFIAGMVLYGVGAGVQELA-ALAISELVP-NKWRGLGLAIASI----PFIITTWI-SPLIAQLFA------AHSGWRWI 198 (599)
T ss_pred -HHHHHHHHHHHhhHHHHHH-HHHHHHhcc-cchhhhHhHHHHH----HHHhhhcc-cHHHHHHhc------cCCCcchH
Confidence 1222224567776555433 444788886 4677554433332 22222212 233332 22 13589999
Q ss_pred HHHHHHHHHHHHHHHHhcccccc-cc---cc---c------------------------------CC-C-C---------
Q 021040 206 AYSSIFIGCCFVGIFLSRTEEPR-LK---MG---L------------------------------RG-N-S--------- 237 (318)
Q Consensus 206 ~~i~~~~~~l~~~~~~~~~~e~~-~~---~~---~------------------------------~~-~-~--------- 237 (318)
+++.+++..+..+..+++-+.++ ++ ++ + .+ + +
T Consensus 199 ~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lv 278 (599)
T PF06609_consen 199 FYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLV 278 (599)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHH
Confidence 98877766655544433332221 10 00 0 00 0 0
Q ss_pred ----------------chHHH--HHHHHhc-HHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHH
Q 021040 238 ----------------HARIS--WAYWFKK-ILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAII 295 (318)
Q Consensus 238 ----------------~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~ 295 (318)
..++. -.+++|+ |.+...++..++....++....++|......++-+.. ..+......
T Consensus 279 iG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~ 358 (599)
T PF06609_consen 279 IGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPV 358 (599)
T ss_pred HHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhH
Confidence 00111 1367777 5566666666666666677778889988887766542 233333333
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021040 296 YICSFIVSILLQVISLKLY 314 (318)
Q Consensus 296 ~v~~~i~~~~~~~i~~~~~ 314 (318)
.++...++.+.+.+.+|+.
T Consensus 359 ~fg~~~g~~i~g~l~~~ir 377 (599)
T PF06609_consen 359 GFGSCAGAVILGLLFSKIR 377 (599)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 3444555555555555443
No 108
>PTZ00207 hypothetical protein; Provisional
Probab=99.38 E-value=3e-10 Score=109.81 Aligned_cols=162 Identities=9% Similarity=0.054 Sum_probs=104.5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
.+.+....++|+|.++++++.+++.. ..+.+++.|+++||+|||+. +.++.++..++....+. +.. .... .+.+.
T Consensus 48 v~s~~L~~~lgls~~~l~~i~svg~~-~g~~~lp~G~L~Dr~G~R~v-llig~ll~~iG~ll~al-a~~-~~i~-~s~~~ 122 (591)
T PTZ00207 48 LISGAMQARYNLTQRDLSTITTVGIA-VGYFLLPYSFIYDYLGPRPI-FVLSMTVFCLGTLLFAL-TFQ-EVIE-GSVVR 122 (591)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH-Hhc-cccc-CcHHH
Confidence 33344334459999999999887544 45678889999999999998 56788888888765542 110 0000 12222
Q ss_pred HHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHH
Q 021040 125 ETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRW 204 (318)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 204 (318)
+ .+..++.++|.+.........+.+.+ +++|+.+.++...+..+|.++.+. +...+. ..+|++
T Consensus 123 l----~l~r~l~G~G~~~~~~~~~~~i~~~F--p~~RG~a~Gi~~~~~gLGsaI~~~----l~~~l~-------~~~~~~ 185 (591)
T PTZ00207 123 L----SVYNGLMTLGCMLFDLGAVVTVLSVF--PSNRGAVVAIMKTFTGLGSAILGS----IQLAFF-------SDNTSA 185 (591)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHHHHHHH----HHHHHH-------HHhHHH
Confidence 2 22223456666555555555556665 368999999999888888765332 222111 135777
Q ss_pred HHHHHHHHHHHHHHHHHhcccccc
Q 021040 205 IAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 205 ~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
.+++.+++++++.++...++++++
T Consensus 186 ~fl~l~vl~~vv~ll~~~~vr~p~ 209 (591)
T PTZ00207 186 YFFFLMSFALVVGILAIVFMRLPP 209 (591)
T ss_pred HHHHHHHHHHHHHHHHHhheeCCc
Confidence 778888888888887777777664
No 109
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.36 E-value=7.7e-11 Score=110.70 Aligned_cols=183 Identities=13% Similarity=-0.004 Sum_probs=123.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCC--------hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLS--------PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV 102 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls--------~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i 102 (318)
+..+..+........+++.|+++.|.+ .++.|.+.++..+...+..++.|+++||+||||. +..+.+..++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~-l~~~~~~~~v 293 (418)
T TIGR00889 215 FFSMLLGAPLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKV-MLLSLVAWAL 293 (418)
T ss_pred HHHHHHHhHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHH
Confidence 334444444445557788888877644 3677999999999999999999999999999988 5667777666
Q ss_pred HHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHH
Q 021040 103 SFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYA 181 (318)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~ 181 (318)
++..... ....... .....+..++.+++.+...+....++.|..+ +++|+++.++.+ ....+|.++++.
T Consensus 294 ~~~l~~~-------~~~~~~~--~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p-~~~~g~~~g~~~~~~~~lg~~iGp~ 363 (418)
T TIGR00889 294 RFGFFAY-------GDPEYFG--YALLFLSMIVYGCAFDFFNISGSVFVEKEVP-VHIRASAQGLFTLMCNGFGSLLGYI 363 (418)
T ss_pred HHHHHHH-------cCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 6543321 0111100 1111122244666666666666677788775 578999999986 556788888888
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
+++.+.+..+.. ...+|++.+.+.+++.+++.++..++.||+.
T Consensus 364 l~G~l~~~~g~~----~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 364 LSGVMVEKMFAY----GTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHhccc----cCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 877777654310 0136888888888787778787778888763
No 110
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=99.35 E-value=1.7e-10 Score=111.28 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHH
Q 021040 59 RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNV 138 (318)
Q Consensus 59 ~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 138 (318)
++.+++.+...++.++++++.|+++||+|||+. ++.+.++..++.+.... ++ +...+...+ ++.|+
T Consensus 89 ~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~-l~~~~~~~~iG~ii~~~-------a~--~~~~l~~GR----~l~G~ 154 (513)
T KOG0254|consen 89 VRQGLLTSILNLGALVGSLLAGRLGDRIGRKKT-LLLAVVLFLIGAIIIAL-------AP--SWYQLIVGR----ILTGL 154 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHH-------hh--hHHHHHHHH----HHhcc
Confidence 456999999999999999999999999999998 56788888888765431 22 233333333 56778
Q ss_pred HHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 021040 139 GWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (318)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 218 (318)
|.+........+++|+.| ++.|+...+..+....+|..++..++ .... +...+||+.+.+..+.+++..+
T Consensus 155 g~G~~~~~~piy~sEiap-~~~RG~l~~~~~l~~~~Gi~~~~~~~-----~~~~----~~~~~Wr~~~~~~~i~~~~~~~ 224 (513)
T KOG0254|consen 155 GVGGASVLAPVYISEIAP-AHIRGTLVSLYQLFITIGILLGYCIN-----YGTS----KVYAGWRIPLGLALIPAVILAL 224 (513)
T ss_pred chhhhhhcchhhHhhcCC-hhhhHHHHHHHHHHHHHHHHHHHHHh-----hhhc----cCCccHHHHHHHHHHHHHHHHH
Confidence 888777777788899876 57999999998888887777653322 1110 0003688887777777777666
Q ss_pred HHHhcccccc
Q 021040 219 IFLSRTEEPR 228 (318)
Q Consensus 219 ~~~~~~~e~~ 228 (318)
. .++.||++
T Consensus 225 ~-~~~~pesp 233 (513)
T KOG0254|consen 225 G-MLFLPESP 233 (513)
T ss_pred H-HHhCCCCh
Confidence 6 78888875
No 111
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.34 E-value=2e-10 Score=106.90 Aligned_cols=180 Identities=13% Similarity=0.047 Sum_probs=115.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~ 106 (318)
+...+..+.....+.....++++|+.+.|.+..+.|...++..+...+++++.|+++||+|||+. +..+..+.+++...
T Consensus 208 ~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~-~~~~~~l~~~~~~~ 286 (393)
T PRK09705 208 WTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKL-LMLALVLQLVGFCG 286 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHH-HHHHHHHHHHHHHH
Confidence 33333333334445556678899998889999999999999999999999999999999999987 45566665555443
Q ss_pred HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
+.. .+ .. ... . .. .+.+++.+...+.......+..+++++|++..+..+....++..+++.+.+.+
T Consensus 287 ~~~--~~-----~~-~~~-~-~~----~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l 352 (393)
T PRK09705 287 FIW--LP-----LQ-LPV-L-WA----MVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVL 352 (393)
T ss_pred HHH--cc-----ch-HHH-H-HH----HHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 11 11 111 1 11 12344444444334444445554456789999988888888887777777666
Q ss_pred HHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040 187 FSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (318)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~ 230 (318)
.+..+ +|...+.+.++.+++...+...+.||++++
T Consensus 353 ~~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 353 RSISG---------NYLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred HHHhC---------CchHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 65432 355555555555555555556667776554
No 112
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.33 E-value=5.3e-10 Score=100.19 Aligned_cols=261 Identities=14% Similarity=0.056 Sum_probs=136.2
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (318)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~ 98 (318)
.|..++=...|.+.. ...-+..+|+-..+++.|+++.|++.+...+....++..++.|.++||+||||..+. -.+
T Consensus 33 ~~Fqr~yl~vY~La~----~aDWLQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~-~ci 107 (354)
T PF05631_consen 33 RRFQRKYLLVYLLAM----AADWLQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLL-FCI 107 (354)
T ss_pred HHHHHHHHHHHHHHH----HHHHhhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHH-HHH
Confidence 333333345555543 333445567655556679999999999999999999999999999999999999654 444
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhc-cccccCccchhHHHHHHHHHHHHHH-
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMV-NCITLNSTSRVVLTSCRNAFTMVAN- 176 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~R~~~~~~~~~~~~~g~- 176 (318)
+.+++.+..- .+ +...+++.+ ++.|++.+....+..+++ .|-....-++.........++.+++
T Consensus 108 ly~~scl~k~--------~~--~~~~L~~GR----vlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~ 173 (354)
T PF05631_consen 108 LYSLSCLTKH--------SS--NYPVLLLGR----VLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNG 173 (354)
T ss_pred HHHHHHHHHh--------cc--ccHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhH
Confidence 4445433221 11 123233333 456677777666666554 3321111111222222211111222
Q ss_pred ---HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccccc--CCCCchHHHHHHHHhcHH
Q 021040 177 ---LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGL--RGNSHARISWAYWFKKIL 251 (318)
Q Consensus 177 ---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~--~~~~~~~~~~~~~~~~~~ 251 (318)
+.++.++-.+++..+ .+-..+|.....+..++.++....=+|...++.+ +..+..++.++.+++||+
T Consensus 174 ~vAI~aGv~a~~l~~~~~--------~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~~~~~~~~~~~~~~a~~~i~~d~r 245 (354)
T PF05631_consen 174 VVAIGAGVVANVLADWFG--------FGPVAPFDAAIVLLAVAAVLILKTWPENYGDTSSSSSLSGSFREAWRAILSDPR 245 (354)
T ss_pred HHHHHHhHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHHHHhcccccCCCcccccchHHHHHHHHHHHHcCch
Confidence 222222222222221 1113344333333333433333333454322111 112345667888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhh-hccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 021040 252 YYQVALVYMLTRLVVNVSQAYLAFYVI-NDLRMGQSAKALVPAIIYICSFIVSILLQVI 309 (318)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~yl~-~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i 309 (318)
.+.+..++.+.....+.+...-.+-++ +..+. -.+.+-...+++.++|+-+.+++
T Consensus 246 il~LG~~qslFE~smy~FVflWtPaL~~~~~~~---P~GlIFssFM~a~MlGS~lf~~l 301 (354)
T PF05631_consen 246 ILLLGLIQSLFEGSMYLFVFLWTPALDPDDEEL---PLGLIFSSFMVAMMLGSSLFSRL 301 (354)
T ss_pred hHHHHHHHHHHHHHHHHheeeeeceecCCCCCC---CchHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888877765444333333 11111 12333233445555666555443
No 113
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.31 E-value=1.9e-10 Score=108.35 Aligned_cols=247 Identities=19% Similarity=0.114 Sum_probs=150.6
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh---cc-CchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR---FG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (318)
Q Consensus 45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr---~G-rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~ 119 (318)
.-..+|+++. |+++++......+..+-. ...|+.|.++|- +| |||+|+.++.++.+++...+.. .|.. .
T Consensus 10 ~~~~~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~--~~~~---~ 83 (433)
T PF03092_consen 10 LAIYPFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL--LPAS---E 83 (433)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh--cccc---c
Confidence 3355677774 999999998887777654 458999999994 56 8999999888777655443331 3311 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
.+..... +...+..+|.+..++...+++.|...+ +++|+...+.......+|.+++..+.+++...
T Consensus 84 ~s~~~~~----~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~--------- 150 (433)
T PF03092_consen 84 SSAAIAV----VLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS--------- 150 (433)
T ss_pred chhhhHH----HHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc---------
Confidence 1122111 111346788888999999999888753 34467777777777788888887777776643
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccccccccc-------cCCC-------CchHHHHHHHHhcHHHHHHHH-HHHHHH
Q 021040 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG-------LRGN-------SHARISWAYWFKKILYYQVAL-VYMLTR 263 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 263 (318)
.++++.+.+.+++..+..+...+..+|++..++ +++. ++.....++.+++|..+.... ..++..
T Consensus 151 -~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~ 229 (433)
T PF03092_consen 151 -FGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFGSFREQLSELWRALQQRAIWQPILFFIFFFN 229 (433)
T ss_pred -CCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 234555666665555555555555555211110 0100 112234566777888777666 333332
Q ss_pred HHHHHHHHHhHHhhhhccc---cccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 264 LVVNVSQAYLAFYVINDLR---MGQSAKALVPAIIYICSFIVSILLQVISL 311 (318)
Q Consensus 264 ~~~~~~~~~~~~yl~~~~g---~~~~~~~~~~~~~~v~~~i~~~~~~~i~~ 311 (318)
........-.-.+..+..+ +++...+.+..+..++++++..+..+.-+
T Consensus 230 ~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~ 280 (433)
T PF03092_consen 230 LPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFS 280 (433)
T ss_pred hccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222111111223334445 77777777777778888888888877644
No 114
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.28 E-value=2.1e-10 Score=107.17 Aligned_cols=257 Identities=8% Similarity=0.013 Sum_probs=154.1
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccC-chHHHHH
Q 021040 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH-FKIWHGA 95 (318)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Gr-r~~~l~~ 95 (318)
+|-+|+....-.+.++....-.++..+-.-+|++++ +.+.+..|++.++..++.++.+|++|+++.|.|+ ||| ++.
T Consensus 29 ~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~P-li~ 107 (488)
T KOG2325|consen 29 RKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKP-LIV 107 (488)
T ss_pred cCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccC-HHH
Confidence 445566665555556665555555555556899985 8889999999999999999999999999999986 888 567
Q ss_pred HHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040 96 GSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (318)
Q Consensus 96 g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g 175 (318)
|.++.+++-++-. ++. ..+++..+..++.+ ++.|+|.+... ...+++++-+. .++|.++.+....+..+|
T Consensus 108 s~ii~~~g~llY~--~l~--~~~~~~~y~mL~~R----~l~Gvg~~n~a-~lR~Y~a~~s~-~~dR~rA~a~~~~~~vlg 177 (488)
T KOG2325|consen 108 SFLIAIIGNLLYL--ALA--YVPNGVKYLMLVAR----ILTGVGVGNFA-VLRAYIADAST-VEDRPRAFAATSGGFVLG 177 (488)
T ss_pred HHHHHHHHHHHHH--HHH--hcccchHHHHHHHH----HHcCcCcccHH-HHHHHHHhccC-ccchHHHHHHhhhHHHHH
Confidence 7777777644221 011 11222233333333 45666655433 45778877664 478888888777777788
Q ss_pred HHHHHHHHHHHHHhhccCcc----cchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC------CCchHHHHHH
Q 021040 176 NLSLYAIAFIVFSVSTAKTH----ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRG------NSHARISWAY 245 (318)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~------~~~~~~~~~~ 245 (318)
.++|+.+. +.+..+++.|. +...+.|....++.+++.++..++..++.+|.+.+..+++ ++...+..+.
T Consensus 178 ~ilGp~~q-~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (488)
T KOG2325|consen 178 IILGPTIQ-LAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSVEEEKSDIEKVKK 256 (488)
T ss_pred HHHhHHHH-HHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccchhhccchhhhcc
Confidence 88887764 44554443321 1122445666677777777777777777888754432111 1111111111
Q ss_pred HHhcHH-HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccch
Q 021040 246 WFKKIL-YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSA 287 (318)
Q Consensus 246 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~ 287 (318)
..-+.. .+.+.+..+...+......+..+......++...++
T Consensus 257 ~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~ 299 (488)
T KOG2325|consen 257 PKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSE 299 (488)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccch
Confidence 111111 222234444444454555666677777777776543
No 115
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.24 E-value=5.7e-10 Score=99.96 Aligned_cols=116 Identities=14% Similarity=-0.007 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHH
Q 021040 57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIF 136 (318)
Q Consensus 57 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (318)
+....|.+-+.+++.+++++|.+|.+|||+|||.+ +.+|.+..++... +|. .+ .+ +..+++-+++.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpv-ll~c~~~va~s~l-l~~------~S--~~----F~afv~aR~l~ 131 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPV-LLACLIGVALSYL-LWA------LS--RN----FAAFVLARFLG 131 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHH-HHHHHHHHHHHHH-HHH------HH--HH----HHHHHHHHHhh
Confidence 45678999999999999999999999999999866 7788877777543 441 11 11 11222223344
Q ss_pred HHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 137 NVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
|+..+ ......++++|+.++ |+|+...+.......+|.++|+++++-+..
T Consensus 132 Gi~kg-nl~v~rAiisdV~se-k~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 132 GIFKG-NLSVIRAIISDVVSE-KYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred hhccC-chHHHHHHHHhhcCh-hhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 44444 334567899999874 889999998888889999999998876654
No 116
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.23 E-value=6.3e-10 Score=105.96 Aligned_cols=177 Identities=8% Similarity=-0.049 Sum_probs=98.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
+..+...........++|.|+++. |+|..+.++...+..+...++.++.|+++||+||||.. ..+.....++.....
T Consensus 265 ~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~-~~~~~~~~~~~~~~~- 342 (467)
T PRK09556 265 FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRAL-VACIALALIIFTLGV- 342 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchH-HHHHHHHHHHHHHHH-
Confidence 333333334444567889999885 99999999999999999999999999999999999874 333322222221111
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYAIAFIVFS 188 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~~~~~l~~ 188 (318)
.+ ...+.....+.. ++.+++.............|..| +++|+++.++.+...++ |..+++.+.+.+.+
T Consensus 343 --~~----~~~~~~~~~~~~----~~~G~~~~~~~~~~~~~~~~~~p-~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~ 411 (467)
T PRK09556 343 --YQ----HATSEYMYLASL----FALGFLVFGPQLLIGVAAVGFVP-KKAIGVANGIKGTFAYLFGDSFAKVGLGMIAD 411 (467)
T ss_pred --HH----hcCcHHHHHHHH----HHHHHHHhhHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhc
Confidence 00 011122111211 12332221111122244557765 57899999998877675 54555555444443
Q ss_pred -hhccCc-ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 189 -VSTAKT-HADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 189 -~~~~~~-~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
...+.. .+....+|+..+.+.++..++..+..
T Consensus 412 ~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 412 PTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred ccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 000000 00002458888866655555544433
No 117
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.23 E-value=2e-09 Score=103.22 Aligned_cols=171 Identities=15% Similarity=0.093 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
....+....++|.|+++. |.+..+.++......+...++.++.|.++||+|||+.+ ..+.+...+....++. .
T Consensus 263 ~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~-~~~~~~~~~~~~~~~~--~--- 336 (490)
T PRK10642 263 NVTYYMLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFV-ILGSVALFVLAIPAFI--L--- 336 (490)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHH--H---
Confidence 344555667889999775 99998888888888888999999999999999999874 4555433322221110 0
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (318)
....+........ ++.+++.+..........+++.| ++.|++..+..+....+++.+++.+.+.+...
T Consensus 337 -~~~~~~~~~~~~~----~~~g~~~~~~~g~~~~~~~~~~p-~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~------ 404 (490)
T PRK10642 337 -INSNVIGLIFAGL----LMLAVILNCFTGVMASTLPAMFP-THIRYSALAAAFNISVLVAGLTPTLAAWLVES------ 404 (490)
T ss_pred -HhCCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 0011112112222 22333333333344556677776 57899888763333333444444333333321
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 196 ADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
..+|+..++...+.++++.+. .++.||++.
T Consensus 405 ---~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~ 434 (490)
T PRK10642 405 ---TQNLMMPAYYLMVVAVIGLIT-GVTMKETAN 434 (490)
T ss_pred ---hCCchHHHHHHHHHHHHHHHH-HHHhccccC
Confidence 113444444444444444333 345688754
No 118
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.19 E-value=5.1e-10 Score=102.41 Aligned_cols=151 Identities=16% Similarity=0.077 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
....+.++|.++.|.+..+.+.+.+...+...+++++.|+++||+|||+. +..+.+..+++...+.. . ++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~~--~-----~~~~ 294 (377)
T TIGR00890 223 LLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKT-MSIVFGISAVGMAAMLF--I-----PMLN 294 (377)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHH--c-----ccch
Confidence 34456677777779999999999999999999999999999999999987 45666666666544331 1 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
... . .....+.+++.+.......++..|..+ +++|++..+..+....+|..+++.+.+.+.+ ..+
T Consensus 295 ~~~-~---~~~~~~~g~~~g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~----------~~g 359 (377)
T TIGR00890 295 DVL-F---LATVALVFFTWGGTISLFPSLVSDIFG-PANSAANYGFLYTAKAVAGIFGGLIASHALT----------EIG 359 (377)
T ss_pred hHH-H---HHHHHHHHHHhccchhccHHHHHHHhh-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHHh----------hhc
Confidence 111 1 111123445555544455667778775 5789999999988888888877766655543 246
Q ss_pred HHHHHHHHHHHHHH
Q 021040 202 YRWIAYSSIFIGCC 215 (318)
Q Consensus 202 ~~~~~~i~~~~~~l 215 (318)
|++.+.+.+++.++
T Consensus 360 ~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 360 FEYTFIVTGAFALT 373 (377)
T ss_pred hhhHHHHHHHHHHH
Confidence 77777666655544
No 119
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.19 E-value=1.5e-09 Score=101.22 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040 39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (318)
Q Consensus 39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 118 (318)
.......++|.|+++.|.+..+.+.+.....+...++.++.|+++||+|||+.. ..+.+...++...+.. .+
T Consensus 235 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~-------~~ 306 (406)
T PRK11551 235 VLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVV-LLIYAGILASLAALAA-------AP 306 (406)
T ss_pred HHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHh-------cC
Confidence 333455677888888899999999999999999999999999999999998874 4444444444332221 11
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
+..... +..++.+++.+.......++..|..+ +++|++..++.+....+|..+++.+.+.+.
T Consensus 307 --~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~ 368 (406)
T PRK11551 307 --SFAGML----LAGFAAGLFVVGGQSVLYALAPLFYP-TQVRGTGVGAAVAVGRLGSMAGPLLAGQLL 368 (406)
T ss_pred --cHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHcc-hhhhhhhhhHHHHhhhHHHHHHhhhHhhhh
Confidence 122111 11233445554455556677788875 578999999998888888887776665554
No 120
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.17 E-value=8.8e-09 Score=95.88 Aligned_cols=160 Identities=11% Similarity=0.056 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 118 (318)
......++|.|+++. |++..+.|.+.+...+...++.++.|+++||+||||. +..+.+...+...... ..+
T Consensus 232 ~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~-~~~~~~~~~~~~~~~~-------~~~ 303 (393)
T PRK15011 232 NSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFL-MRVAAVAGVCFYAGML-------MAH 303 (393)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHH-HHHHHHHHHHHHHHHH-------HHh
Confidence 334456788888775 9999999999888888888899999999999999987 4455544443332221 111
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
+........ .+.+++.+...........|..| ++|+++.+..+...++|..+++.+++.+.+.
T Consensus 304 --~~~~~l~~~----~l~~~~~g~~~~~~~~~~~~~~p--~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~--------- 366 (393)
T PRK15011 304 --SPAILLGLQ----LLNAIYIGILGGIGMLYFQDLMP--GQAGSATTLYTNTSRVGWIIAGSLAGIVAEI--------- 366 (393)
T ss_pred --hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 122111111 12222333322233345566654 4688888888777888888887776665532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e 226 (318)
.+|++.+.+.+++.++.. +..++.||
T Consensus 367 -~g~~~~~~~~~~~~~~~~-~~~~~~~~ 392 (393)
T PRK15011 367 -WNYHAVFWFALVMIIATL-FCLLRIKD 392 (393)
T ss_pred -hhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 367777766555555443 33445555
No 121
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.16 E-value=4.5e-09 Score=98.14 Aligned_cols=168 Identities=13% Similarity=0.117 Sum_probs=103.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
+..+..........+++|.|+++.|.+..+.+.+.....+...++.+..|+++||+||||+....+.+..+++...+..
T Consensus 229 ~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~- 307 (402)
T TIGR00897 229 MVRIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYY- 307 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH-
Confidence 3334444445556678888887779999999999999999999999999999999999887433333333332221110
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
.+.. .. .+..... +...+.+++.+.. .+..+...+.. +++|+++.++.+....+|+.+++.+.+.+.+.
T Consensus 308 -~~~~-~~-~~~~~~~----~~~~~~G~~~~~~-~~~~~~~~~~~--~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~- 376 (402)
T TIGR00897 308 -IPQH-FG-HSFAVAL----IIAIALGIFLAGY-VPLAAVFPTLA--PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGF- 376 (402)
T ss_pred -HHHc-cC-CcHHHHH----HHHHHHHHHHHHH-HHHHHHHHhhC--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 1100 01 1122111 1123345444443 23444555643 45899999999999999988887777666643
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGI 219 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~ 219 (318)
.++...+++.+++.++..++
T Consensus 377 ---------~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 377 ---------FGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred ---------cchHHHHHHHHHHHHHHHHH
Confidence 34566666666555444433
No 122
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3.7e-09 Score=96.73 Aligned_cols=172 Identities=16% Similarity=0.097 Sum_probs=112.1
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
+++.+..-+..+.........++|+.|+++|+ |++.+.+++++.++.+...+++.+.|+++|| +.|+. +.....+.+
T Consensus 210 ~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~-l~~~~~l~a 287 (394)
T COG2814 210 RPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLADR-GPRRA-LIAALLLLA 287 (394)
T ss_pred CchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhccc-cchhH-HHHHHHHHH
Confidence 33333333333333444556779999999998 9999999999999999999999999999999 87777 455555555
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
+....+.. .++ +....... ..++++..+..........++. .++.++.+.++.....|+|..+|+.
T Consensus 288 ~~~l~l~~-------~~~-~~~~~~~~----~~~wg~a~~~~~~~~~~~~a~~--~p~~~~~a~sl~~aa~nlgia~GA~ 353 (394)
T COG2814 288 LALLALTF-------TGA-SPALALAL----LFLWGFAFSPALQGLQTRLARL--APDAADLAGSLNVAAFNLGIALGAA 353 (394)
T ss_pred HHHHHHHH-------hcc-hHHHHHHH----HHHHHHHhhhhhhHHHHHhccc--CCCchHHHHHHHHHHHHHHHHHHHH
Confidence 55543321 111 12211111 1234444444444444444442 2467889999999999999999999
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
+++.+++.. ++....++.+++..+...+.
T Consensus 354 lGG~v~~~~----------g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 354 LGGLVLDAL----------GYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHHHHhh----------chHHHHHHHHHHHHHHHHHH
Confidence 998888652 44545555555555444444
No 123
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.16 E-value=6e-09 Score=93.95 Aligned_cols=181 Identities=10% Similarity=-0.046 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc-------chhHHH
Q 021040 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA-------DLENQY 202 (318)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~-------~~~~~~ 202 (318)
++..++.+.|.+..++..+++++++.+ +|++++..++.+.+..+|.++++.+++.+...-.. +.. .....|
T Consensus 14 l~~~f~~g~G~~~lq~~~n~~v~~~~~-~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~-~~~~~~~~~~~~~~~~ 91 (310)
T TIGR01272 14 LGALFVLASGLTILQVAANPYVSILGP-IETAASRLALTQAFNKLGTTVAPLFGGSLILSGAG-DLSMQVATANAEAAKV 91 (310)
T ss_pred HHHHHHHHhhHHHHHhhHHHHHHHHCC-cchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc-chhhhhhhhhHHHHHH
Confidence 333356788899999999999999875 46788888999999999999888877665532100 000 012468
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhc-
Q 021040 203 RWIAYSSIFIGCCFVGIF-LSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVIND- 280 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~- 280 (318)
++.+++.+++..+..++. +...||.+++++++...+.....++++|+|.++...+..++..........|++.|+.+.
T Consensus 92 ~~~yl~ia~~~~~~~i~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~ 171 (310)
T TIGR01272 92 HTPYLLLAGALAVLAIIFAFLPLPELQEADVARVSSGDTTQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPH 171 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCCcccccccccccccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 888876665544444333 333454322221111111111234577888888777777776667888999999999865
Q ss_pred -cccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 281 -LRMGQSAKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 281 -~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
+|+++...+........+..++.++.+++.+|
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r 204 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPM 204 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57776554444444444444444444444444
No 124
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.15 E-value=7.4e-09 Score=95.16 Aligned_cols=160 Identities=11% Similarity=0.027 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 118 (318)
......+++.|+++. |.++.+.|++.........++.++.|+++||+||||. +..+.+...+....... .
T Consensus 215 ~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~-------~- 285 (375)
T TIGR00899 215 NILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRL-MLLAALAGVAFYTGLAA-------D- 285 (375)
T ss_pred HHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-------H-
Confidence 334455678888765 9999999999888888888889999999999999987 44555444443322210 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
.+.+... +...+.+++.+...+....+..|..+ ++|+++.+..+...++|..+++.+.+.+.+.
T Consensus 286 -~~~~~~~----~~~~~~g~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~--------- 349 (375)
T TIGR00899 286 -NSLWALL----MLQLLNAIFIGILAGIGMLYFQDLMP--GRAGAATTLYTNTGRVGWIIAGSVGGILAER--------- 349 (375)
T ss_pred -HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhCc--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 1122111 11223455555544455566677654 4566888888888888888777766655532
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040 199 ENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~~~~~~~~e 226 (318)
.+|++.+.+.+++.++..+.. ..+||
T Consensus 350 -~g~~~~~~~~~~~~~~~~~~~-~~~~~ 375 (375)
T TIGR00899 350 -WSYHAVYWFAIVMLIVALFCL-LLIKD 375 (375)
T ss_pred -ccchhHHHHHHHHHHHHHHHH-heecC
Confidence 356777766665555444433 44554
No 125
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=99.14 E-value=5.6e-09 Score=100.82 Aligned_cols=146 Identities=15% Similarity=0.090 Sum_probs=101.9
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (318)
+..+.....+..+++.++..++..++|.++||+|||+++ +.+.++.+++-.... ++++ .. .+.+.+
T Consensus 113 ~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~-~~~~~~~~i~~~~~a-------~a~~--~~----~~~~~R 178 (521)
T KOG0255|consen 113 VCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVL-LVSLLLFIIFGILTA-------FAPN--YW----MFLIFR 178 (521)
T ss_pred eeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHH-HHHHHHHHHHHHHHH-------HhCc--HH----HHHHHH
Confidence 378889999999999999999999999999999999985 567666666543322 2222 22 234445
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIG 213 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~ 213 (318)
++.|++.+........+..|+.. +++|+.+..+ ......++.+++ +..+.+. .+|||..++..+++
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~-~~~R~~~~~~-~~~~~~~~~~~~----~~~a~~~--------~~Wr~~~~~~~~~~ 244 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVS-PKQRGLALTL-GGFFFVGGLMLP----AGAAYIT--------RDWRWLFWIISIPS 244 (521)
T ss_pred HHHHhhccchhHHhHhhheeecC-cchhhHHHHH-HHHHHHHHHHHH----HHHHHHH--------hhHHHHHHHHHHHH
Confidence 66777777777777788899985 5899988887 444444444332 3333322 48999998888777
Q ss_pred HHHHHHHHhcccccc
Q 021040 214 CCFVGIFLSRTEEPR 228 (318)
Q Consensus 214 ~l~~~~~~~~~~e~~ 228 (318)
.+..+. .+..+|++
T Consensus 245 ~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 245 GLFLLL-WFLPPESP 258 (521)
T ss_pred HHHHHH-HHccCcCh
Confidence 766555 45556764
No 126
>PRK10504 putative transporter; Provisional
Probab=99.14 E-value=9.3e-09 Score=97.88 Aligned_cols=146 Identities=11% Similarity=-0.023 Sum_probs=99.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
+...........+.|.|+++. |.++.+.++......+...+..++.|+++||+|||+. +..+....++....+.. .
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~~~--~ 347 (471)
T PRK10504 271 FAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRV-LVATTLGLALVSLLFML--V 347 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHh--c
Confidence 333444444445567777765 9999999999998889888999999999999999988 45666666655443321 1
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
+ .......... ...+.+++.+....+.+.+..+..+ +++|+...+..+....+|..+++.+++.+++..+
T Consensus 348 ~----~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 348 A----LLGWYYLLPF----VLFLQGMVNSTRFSSMNTLTLKDLP-DNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred c----ccccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcCC-HHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 1111111111 1123445555555566667777665 4788999999999999999998888887776544
No 127
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.13 E-value=7.5e-10 Score=86.46 Aligned_cols=136 Identities=15% Similarity=0.024 Sum_probs=90.5
Q ss_pred HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH
Q 021040 66 LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV 145 (318)
Q Consensus 66 ~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 145 (318)
+...+...+.+++.|+++||+||||.+ ..+.....++...... .+ +.+... +...+.+++.+...+
T Consensus 5 ~~~~~~~~~~~~~~g~~~d~~g~~~~~-~~~~~~~~~~~~~~~~-------~~--~~~~~~----~~~~~~g~~~~~~~~ 70 (141)
T TIGR00880 5 AGYALGQLIYSPLSGLLTDRFGRKPVL-LVGLFIFVLSTAMFAL-------SS--NITVLI----IARFLQGFGAAFALV 70 (141)
T ss_pred EeehhHHHHHHhhHHHHHhhcchhHHH-HHHHHHHHHHHHHHHH-------hc--cHHHHH----HHHHHHHHHHHHHHH
Confidence 345677788999999999999999984 5566666665443321 11 122111 122346666666666
Q ss_pred hHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040 146 AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (318)
Q Consensus 146 ~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 225 (318)
...++..|..+ +++|++..+..+....+|..+++.+.+.+.+ ..+|++.+.+.+++..+..+...+..|
T Consensus 71 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (141)
T TIGR00880 71 AGAALIADIYP-PEERGVALGLMSAGIALGPLLGPPLGGVLAQ----------FLGWRAPFLFLAILALAAFILLAFLLP 139 (141)
T ss_pred hHHHHHHHHCC-hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhc----------ccchHHHHHHHHHHHHHHHHHHhhcCC
Confidence 67778888875 5789999999888888888877666544432 246777877777666666666655555
Q ss_pred c
Q 021040 226 E 226 (318)
Q Consensus 226 e 226 (318)
|
T Consensus 140 ~ 140 (141)
T TIGR00880 140 E 140 (141)
T ss_pred C
Confidence 5
No 128
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.13 E-value=5.9e-09 Score=98.88 Aligned_cols=171 Identities=9% Similarity=-0.048 Sum_probs=96.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHHHHHH
Q 021040 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~i~~~ 105 (318)
..+..+...........++|.|+++. |.+..+.+.+..+..+...++.++.|+++||+ |||+........+..++..
T Consensus 258 ~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~ 337 (452)
T PRK11273 258 IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI 337 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHH
Confidence 33443333444455667899999986 99999999999999999999999999999999 4554322222222233322
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH-HHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS-LYAIAF 184 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~-~~~~~~ 184 (318)
..+. .+ ..+....... . .+.+.+.........+...|..| +++|+++.++.+...++|+.+ ++.+.+
T Consensus 338 ~~~~--~~-----~~~~~~~~~~--~--~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~~g~~v~g 405 (452)
T PRK11273 338 VYWL--NP-----AGNPTVDMAC--M--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVG 405 (452)
T ss_pred HHHH--hc-----ccChHHHHHH--H--HHHHHHHHhHHHHHHHHHHHHcC-hhhhhhHHHHHHHHHHHHHHHhhhhhHH
Confidence 2221 11 1111111111 1 11222211111122234456664 578999999888777776543 454444
Q ss_pred HHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 185 IVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (318)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 221 (318)
.+.+ ..+|++.+.+.++.++++.+...
T Consensus 406 ~l~~----------~~g~~~~f~~~~~~~~~~~~~~~ 432 (452)
T PRK11273 406 YTVD----------FFGWDGGFMVMIGGSILAVILLI 432 (452)
T ss_pred HHHH----------HhcchHHHHHHHHHHHHHHHHHH
Confidence 4443 24577777666666555554443
No 129
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.13 E-value=1.4e-08 Score=94.51 Aligned_cols=156 Identities=17% Similarity=0.052 Sum_probs=111.3
Q ss_pred CCCCchhhhhhccc-chHHHHHHHHHHHHHHHHHHHh-C----CChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchH
Q 021040 19 QPVGRWSVLYYGSG-HMLNDITAACWFTYLLLFLTDI-G----LSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKI 91 (318)
Q Consensus 19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~-g----ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~ 91 (318)
+..+-++.+.+.+. .+-.-..++.....+..|++.. + +|++++--+...+.-.--++..++|+++|| +|+||+
T Consensus 15 ~~f~~Pr~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 15 KFFGQPRGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred ccCCCCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 33333444444443 4667777888888888888764 6 999999999999988888999999999999 899999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHH
Q 021040 92 WHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNA 170 (318)
Q Consensus 92 ~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~ 170 (318)
+..|.++.+++...+.. + ...+...+++.. .+..+|.+..-+...+++.|..++ +.+|....+..+.
T Consensus 95 -I~lGail~~iGh~~L~~---~----~~~~~~gl~i~L----~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~ 162 (498)
T COG3104 95 -IVLGAILMAIGHLVLAI---S----SVSGPGGLYIGL----ALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYM 162 (498)
T ss_pred -HHHHHHHHHHHHHHHhc---c----ccccccHHHHHH----HHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEE
Confidence 67899999999887753 1 001112223322 224478888877788888888764 3446777888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 021040 171 FTMVANLSLYAIAFIV 186 (318)
Q Consensus 171 ~~~~g~~~~~~~~~~l 186 (318)
+.|+|+++++.+++.+
T Consensus 163 ~iNiGsl~~p~i~~~~ 178 (498)
T COG3104 163 GINIGSLIAPIITGLL 178 (498)
T ss_pred EeehHHHHHHHHHHHH
Confidence 8899988776665443
No 130
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.12 E-value=8.2e-09 Score=95.61 Aligned_cols=154 Identities=13% Similarity=0.071 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040 39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (318)
Q Consensus 39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 118 (318)
.......++|.|+++.|.+..+.|...+...+...+++++.|+++||+|||+. +..+....+++..... .
T Consensus 215 ~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~-l~~~~~~~~~~~~~~~---------~ 284 (381)
T PRK03633 215 VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLV-LRVQVFVVILGSIAML---------S 284 (381)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHH-HHHHHHHHHHHHHHHh---------h
Confidence 34445577888888889999999999999999999999999999999999887 5556666555543221 0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
. .. ..... .+.+.+.....+...+...|..+ +++++...+..+...++|.++++.+++.+.+.
T Consensus 285 ~--~~-~~~~~----~l~g~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~--------- 347 (381)
T PRK03633 285 Q--AA-MAPAL----FILGAAGFTLYPVAMAWACEKVE-HHELVAMNQALLLSYTVGSLLGPSFTAMLMQN--------- 347 (381)
T ss_pred h--HH-HHHHH----HHHHHHHHhHHHHHHHHHHccCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 0 01 11111 12333333334445566666654 34556666666667778888877776666543
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 021040 199 ENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
.++++.+.+.+.+.++..+..
T Consensus 348 -~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 348 -YSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred -hCccHHHHHHHHHHHHHHHHH
Confidence 356777777666665444333
No 131
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.12 E-value=5.9e-09 Score=98.37 Aligned_cols=173 Identities=10% Similarity=-0.002 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHHHHHHHHhCC
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
+..........+++|.|+++. |++..+.+...+...+...++.++.|+++||+ ++|+.......+...+....++.
T Consensus 253 ~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~- 331 (434)
T PRK11663 253 VLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWL- 331 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHH-
Confidence 333344445567889999775 99999999999999999999999999999998 33333211111111112111111
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
.+ ..+........ ...+++.............|..+ +++|++..++.+....+|..+++.+.+.+.+.
T Consensus 332 -~~-----~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~- 399 (434)
T PRK11663 332 -MP-----FASYVMQAACF----FTIGFFVFGPQMLIGMAAAECSH-KEAAGAATGFVGLFAYLGAALSGYPLAKVLEI- 399 (434)
T ss_pred -cc-----cccHHHHHHHH----HHHHHHHhhHHHHHHHHHHhccc-HhhHHhHHHHHHHHHHHHHHHhcccHHHHHHh-
Confidence 11 11111111111 11222111111122234456654 57899999999999999988877666555532
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
.+|+..+.+.++++++.++...+..|+++
T Consensus 400 ---------~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 400 ---------WHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred ---------cccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45777777777776666665555555543
No 132
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.12 E-value=1.1e-08 Score=93.72 Aligned_cols=270 Identities=12% Similarity=0.061 Sum_probs=148.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
+.+++-++.|.+.|.-+ .-+.-+.++. | +...+-+...++++........+-|+.||+|=|.+ .+.+..+..++-+
T Consensus 48 l~~slL~~SN~~qWI~y-a~i~n~~~~~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a-~llgt~ln~iGa~ 124 (480)
T KOG2563|consen 48 LAFSLLNFSNGMQWIQY-APINNYVNSFYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTA-LLLGTVLNGIGAW 124 (480)
T ss_pred HHHHHHHhcCcchheee-hhHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHH-HHHHHHHHHHHHH
Confidence 45555555554443221 2233444444 6 77777788899999999999999999999999888 5678777777754
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH---hHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV---AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
.=.....| +.++ ..+ +.+. ..-+...+..++ ...+.+++...+++||+.+......++.+|.+++..+
T Consensus 125 Ir~iss~p--~v~~--~f~----~~l~-~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~ll 195 (480)
T KOG2563|consen 125 IRLISSLP--FVPP--LFR----RPLT-HTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLL 195 (480)
T ss_pred HhhhccCc--cccc--cch----hhhh-HHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhc
Confidence 32110111 0011 111 1110 111222222222 1223444544557899999999988999999888777
Q ss_pred HHHHHHhhccCcccchhHHHHH--HHHHHHHHHHHHHHHHHhcccccccccc-----cCCCCchHHHHHHHHhcHHHHHH
Q 021040 183 AFIVFSVSTAKTHADLENQYRW--IAYSSIFIGCCFVGIFLSRTEEPRLKMG-----LRGNSHARISWAYWFKKILYYQV 255 (318)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~--~~~i~~~~~~l~~~~~~~~~~e~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
.+.++..-. .+....|.- .++..++++.+...+..+.-+|+++.+. ++++.+..++.++.+||++|..+
T Consensus 196 ppilV~~~~----~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~~~~~~f~~si~~~~~n~~F~il 271 (480)
T KOG2563|consen 196 PPILVPSSK----DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAALQDASFPKSIKSCFKNRQFIIL 271 (480)
T ss_pred cceecCCCC----CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhhhhcCcHHHHHHHHHcCccHHHH
Confidence 544543210 011233332 3343444444333333333344322211 12234588899999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++++-+....++...+.+-.-+... |.++...+.......+++.+++.+.+.+.||.
T Consensus 272 ~~~ygi~~g~F~~l~~~l~~~l~~s-gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dkt 328 (480)
T KOG2563|consen 272 AICYGIGLGLFNSLSTLLNLALCPS-GYEGVFAGYIGALMIVAGMLGALASGIIADKT 328 (480)
T ss_pred HHHHhhhHHHHHHHHHHhhhccccc-cCCccccchhHHHHHHHHHHHHHHHHhhhhhh
Confidence 8888777766665555443333332 34433334444444455555555555555544
No 133
>PRK03699 putative transporter; Provisional
Probab=99.12 E-value=8.2e-09 Score=96.07 Aligned_cols=163 Identities=7% Similarity=-0.030 Sum_probs=97.4
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHh
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVF 108 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~ 108 (318)
.+..+...........++|.|++|. |+|+.+.+.+.+...+...++.++.|+++||+||||..+ ......++......
T Consensus 211 ~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~-~~~~~~~~~~~~~~ 289 (394)
T PRK03699 211 AIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILT-VLAGLALVLMYLFV 289 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHH
Confidence 3333444444555668899999886 999999999999999999999999999999999998743 34443333322221
Q ss_pred CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
. .++ ....... .++.+++.+...+...+...+..+ +++++..+.......+|..+++.+.+.+.+
T Consensus 290 ~-------~~~--~~~~~~~----~~~~G~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~ 354 (394)
T PRK03699 290 N-------TDD--PSHLLYA----ILGLGFFSSAIYTTIITLGSQQTK--VASPKLVNFILTCGTIGTMLTFVVTSPIVA 354 (394)
T ss_pred H-------cCC--chHHHHH----HHHHHHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 1 111 1111111 123444444333333444455443 345566666666667777777666665554
Q ss_pred hhccCcccchhHHHHHHHHHHHHHHHHHHH
Q 021040 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVG 218 (318)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~ 218 (318)
. .+++..+++.+++..++.+
T Consensus 355 ~----------~g~~~~~~~~~~~~~~~~~ 374 (394)
T PRK03699 355 H----------FGLQAALLTANGLYAVVFV 374 (394)
T ss_pred H----------hCchhhhhhhHHHHHHHHH
Confidence 3 3455565555544444433
No 134
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.12 E-value=1.6e-09 Score=102.32 Aligned_cols=167 Identities=15% Similarity=-0.025 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc---
Q 021040 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS--- 120 (318)
Q Consensus 44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~--- 120 (318)
..+.+.++.+.|.+..+.++......+...++.++.|+++||+|||+. +..+.++.+++...+..+..+ .....
T Consensus 304 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 380 (481)
T TIGR00879 304 MYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPL-LLIGAAGMAICLFVLGILGAS--FVTGSSKS 380 (481)
T ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHhhc--ccCCcccc
Confidence 344555656669999888999999999999999999999999999988 455666666554433210000 01100
Q ss_pred chhHHHHHHHHHHHHHHHHHhhh-HHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040 121 TLKVETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (318)
......... .+...+.+.. .+....+..|..+ +++|++..+..+...++|.++++.+.+.+...
T Consensus 381 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~---------- 445 (481)
T TIGR00879 381 SGNVAIVFI----LLFIAFFAMGWGPVPWVIVSEIFP-LSLRPKGISIAVAANWLANFIVGFLFPTMLES---------- 445 (481)
T ss_pred hhHHHHHHH----HHHHHHHHccccCeehhhhhccCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------
Confidence 011111111 1122222221 2223445577765 57899999999888888888776655444432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 200 NQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 200 ~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
.+|++.+++.++++++..++.+++.||++
T Consensus 446 ~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 446 IGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred cCccceehhHHHHHHHHHHHHheecccCC
Confidence 35777777777777777777666677754
No 135
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.11 E-value=9.8e-09 Score=95.51 Aligned_cols=158 Identities=16% Similarity=0.075 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
.......++++.|+++.|.+ +.++......+...++.++.|++.||+||||. +..+....+++...+.. .
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~ 299 (399)
T PRK05122 230 IGFGTIATFITLYYAARGWD--GAALALTLFGVAFVGARLLFGNLINRLGGLRV-AIVSLLVEILGLLLLWL-------A 299 (399)
T ss_pred HHHHHHHHHHHHHHHHcccc--cchHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH-------h
Confidence 34445557788888877663 44566677788888999999999999999887 45566666665543321 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (318)
+ +..... +..++.+++.+...+.......|..+ +++|+++.+..+....+|..+++.+.+.+.+
T Consensus 300 ~--~~~~~~----~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~--------- 363 (399)
T PRK05122 300 P--SPWMAL----IGAALTGFGFSLVFPALGVEAVKRVP-PQNRGAALGAYSVFLDLSLGITGPLAGLVAS--------- 363 (399)
T ss_pred c--cHHHHH----HHHHHHHHhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1 122111 12234566666555444455556654 5789999999888888887766555544443
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 198 LENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 198 ~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
..+|++.+.+.+++.++..++..+
T Consensus 364 -~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 364 -WFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred -HcCHHHHHHHHHHHHHHHHHHHHH
Confidence 235777777766666655544443
No 136
>PRK03545 putative arabinose transporter; Provisional
Probab=99.09 E-value=8e-09 Score=95.93 Aligned_cols=158 Identities=12% Similarity=0.011 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
....++++|+++. |.|..+.+++.....+...+++++.|+++||+|||+. ..+.....++...+.. .. .
T Consensus 223 ~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~--~~~~~~~~~~~~~l~~------~~--~ 292 (390)
T PRK03545 223 TAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFL--LIAIALLLVCLLLLLP------AA--N 292 (390)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHH--HHHHHHHHHHHHHHHH------Hh--c
Confidence 3456788888886 9999999999999999999999999999999998764 3344444444332210 01 1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (318)
+..... +..++.+++.........+.+.+..+ ++|+++.+..+....+|..+++.+++.+.+. .
T Consensus 293 ~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~----------~ 356 (390)
T PRK03545 293 SEWHLS----VLSIFWGIAIMCIGLAMQVKVLKLAP--DATDVAMALFSGIFNIGIGAGALLGNQVSLH----------L 356 (390)
T ss_pred hHHHHH----HHHHHHHHHHhcchHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------c
Confidence 122111 11234555554444444555556543 5788888888887888888777766655532 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Q 021040 201 QYRWIAYSSIFIGCCFVGIFLSRTE 225 (318)
Q Consensus 201 ~~~~~~~i~~~~~~l~~~~~~~~~~ 225 (318)
+++..+.+.+.+.++..+......|
T Consensus 357 g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 357 GLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 5666776666666655555544444
No 137
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.09 E-value=6.5e-09 Score=93.97 Aligned_cols=165 Identities=16% Similarity=0.159 Sum_probs=118.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCch-HHHHHHHHHHHHHHHHHh
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFK-IWHGAGSVLVAVSFSSVF 108 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~-~~l~~g~~~~~i~~~~~~ 108 (318)
+..+...........+.+.+.++. |.++.+.+.......+...++.++.|+++||+|||+ . +..+.+...++.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~ 260 (352)
T cd06174 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLL-LLIGLLLAALGLLLLA 260 (352)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Confidence 333444445555667888888887 999999999999999999999999999999999998 6 5667776666655432
Q ss_pred CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
. .+ +..... +...+.+++.+...+...++..|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus 261 ~-------~~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~ 326 (352)
T cd06174 261 L-------AP--SLALLL----VALLLLGFGLGFAFPALLTLASELAP-PEARGTASGLFNTFGSLGGALGPLLAGLLLD 326 (352)
T ss_pred H-------hc--cHHHHH----HHHHHHHHHHhccchhHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 11 122112 22245667777777777888888875 5899999999999999998887766655543
Q ss_pred hhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 189 VSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
..+|++.+.+.+++.++..+..
T Consensus 327 ----------~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 327 ----------TGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred ----------ccCcchHHHHHHHHHHHHHHHh
Confidence 2467777777776666555443
No 138
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.09 E-value=3.4e-09 Score=99.47 Aligned_cols=164 Identities=10% Similarity=-0.061 Sum_probs=101.1
Q ss_pred HHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 40 AACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
.......++.|+.+. +.+..+.|.+.++..+...+++++.|+++||+||||. +..+.++.+++......
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-~~~~~~l~~~~~~l~~~------ 311 (420)
T PRK09528 239 YDVFDQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNA-LLLAGTIMAVRIIGSGF------ 311 (420)
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchh-hHHHHHHHHHHHHHHHh------
Confidence 333444566666653 5677889999999999999999999999999999998 45566666665543321
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhccCc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVSTAKT 194 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (318)
.+ +.+..... ..+.+++.+........++.+..+ ++.|+...+. .+....+|.++++.+.+.+.+
T Consensus 312 -~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~------ 377 (420)
T PRK09528 312 -AT--GPLEVSIL----KLLHAFEVPFLLVGVFKYITLNFD-VRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD------ 377 (420)
T ss_pred -cc--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcC-ccceeeeeeehHHHHHHHHHHHHHHHHHHHHH------
Confidence 11 12222211 223445555444444556666664 4566655443 344556676666655555543
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 195 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
..+|+..+.+.+++.++..++..+..++++
T Consensus 378 ----~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 378 ----SIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred ----hhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 245787887777666666666656655543
No 139
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.09 E-value=3.6e-09 Score=97.09 Aligned_cols=173 Identities=11% Similarity=0.011 Sum_probs=105.3
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH-
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS- 103 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~- 103 (318)
.+...+..+...........+++.|+++. |.+..+.+++.....+...++.++.|+++||+|||+..+........++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 296 (399)
T TIGR00893 217 VWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAG 296 (399)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 34444445555556666778889999886 9999999999999999999999999999999999862111111111111
Q ss_pred ---HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040 104 ---FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (318)
Q Consensus 104 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~ 180 (318)
....+. . . ..+......... .+...+.+ ..+...++..|..+ +++|++..+..+....+|..+++
T Consensus 297 ~~~~~~~~~--~----~-~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~~~ 364 (399)
T TIGR00893 297 LVLSLLMFA--T----N-YVNIPYAALALV---ALGFFGLG-AGAIGWALISDNAP-GNIAGLTGGLINSLGNLGGIVGP 364 (399)
T ss_pred HHHHHHHHH--h----c-cchhHHHHHHHH---HHHHhchh-hhhHHHHHHHhhcC-hhHHHHHHHHHHHHHHHhhhhhh
Confidence 111110 0 0 011111111111 11222222 45556677888875 57899999999988888888776
Q ss_pred HHHHHHHHhhccCcccchhHH-HHHHHHHHHHHHHHHHHHH
Q 021040 181 AIAFIVFSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~~~ 220 (318)
.+.+.+.+. .+ |++.+.+.++..++..+..
T Consensus 365 ~i~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 365 IVIGAIAAT----------TGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHhhhhccC----------CCchhHHHHHHHHHHHHHHHHH
Confidence 655444422 23 6777766665555554443
No 140
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.09 E-value=4.1e-09 Score=97.00 Aligned_cols=144 Identities=17% Similarity=0.080 Sum_probs=91.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
+..........++++.|+++. |.+..+.+.+.....+...+.+++.|+++||+|||+.++..+.+....+...... .
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--~ 306 (394)
T TIGR00883 229 IATTTTFYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA--L 306 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH--H
Confidence 344444555667889999775 9999999999999999999999999999999999987543333332222111110 0
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~ 188 (318)
....+... .. ....+.+++.+....+..+.++|..| +++|+++.+.. +....+|..+++.+++.+.+
T Consensus 307 ----~~~~~~~~-~~---~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~ 374 (394)
T TIGR00883 307 ----LDSGSFTL-FF---FLVLGLALIGGMYTGPMGSFLPELFP-TEVRYTGASLAYNLAGAIFGGFAPYIAAALVA 374 (394)
T ss_pred ----hcCCchHH-HH---HHHHHHHHHHHHHhhhHHHHHHHhCC-ccceeeEeeehhHhHHHHHhhHHHHHHHHHHH
Confidence 01111121 11 11133555566666677788889886 46788877763 44445666666666655554
No 141
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.08 E-value=1.5e-08 Score=95.06 Aligned_cols=162 Identities=9% Similarity=-0.077 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
....++|.|.++. |.+..+.|++.+...+...++.++.|+++||.++++. +..+.+..++++..... .+
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~-l~~~~~~~~~~~~~~~~-------~~-- 310 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLL-MLLSTLGSFLAVGLFGL-------MP-- 310 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchH-HHHHHHHHHHHHHHHHc-------cc--
Confidence 3456788899984 9999999999999999999999999999999777766 45566665555543321 11
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (318)
+.....+ ..++.+++.+...+...+++.+..| ++.|+++.+..+....+|..+++.+.+.+.+..
T Consensus 311 ~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~---------- 375 (417)
T PRK10489 311 MWILAVL----CLALFGYLSAISSLLQYTLLQTQTP-DEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM---------- 375 (417)
T ss_pred hHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh----------
Confidence 1111111 1134555555555555567777765 567999999998888888888887777666432
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 201 QYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 201 ~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
+++..+++.++...+...+....++|.+
T Consensus 376 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 376 TPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 3444555555555555555555666654
No 142
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.07 E-value=1.8e-08 Score=100.29 Aligned_cols=140 Identities=15% Similarity=-0.032 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHh
Q 021040 62 AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141 (318)
Q Consensus 62 g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (318)
.+...+..+...++.++.|+++||+|||+. +.++.++.+++.+++.. .++ ....++.. ++.+++.+
T Consensus 598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~-l~~~~~lsai~~ll~~~-------~~s--~~~ll~~~----~l~g~~~~ 663 (742)
T TIGR01299 598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRM-LAGSMVLSCISCFFLSF-------GNS--ESAMIALL----CLFGGLSI 663 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH-------Hcc--HHHHHHHH----HHHHHHHH
Confidence 444667778889999999999999999988 56677777776554321 111 12112111 23444444
Q ss_pred hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 221 (318)
.......++++|+.| .++|+++.++.+....+|.++++.+++.+.. ......+++.+++.++.+++.
T Consensus 664 ~~~~~~~a~~aEl~P-t~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-----------~~~~~pf~i~a~~lll~~ll~- 730 (742)
T TIGR01299 664 AAWNALDVLTVELYP-SDKRATAFGFLNALCKAAAVLGILIFGSFVG-----------ITKAAPILFASAALACGGLLA- 730 (742)
T ss_pred HHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHHHHHHHHH-
Confidence 444456678899886 4789999999999999999988877655542 123445566666555555444
Q ss_pred hcccccc
Q 021040 222 SRTEEPR 228 (318)
Q Consensus 222 ~~~~e~~ 228 (318)
.++||++
T Consensus 731 ~~LPET~ 737 (742)
T TIGR01299 731 LKLPDTR 737 (742)
T ss_pred HhCCCCc
Confidence 3558864
No 143
>PRK09952 shikimate transporter; Provisional
Probab=99.05 E-value=2.8e-08 Score=93.96 Aligned_cols=171 Identities=13% Similarity=0.012 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
........++.+.|+++. |.+......+..+..+...++.++.|+++||+||||.. ..+.++.+++....+. .
T Consensus 263 ~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~-~~~~~~~~~~~~~~~~---~-- 336 (438)
T PRK09952 263 LLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVY-ITGALIGTLSAFPFFM---A-- 336 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHHH---H--
Confidence 344455667888888775 99888776666667777888999999999999999874 4555544443322211 0
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH-HHHHHHHHHHHHHHHHHhhccCc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSLYAIAFIVFSVSTAKT 194 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~~~~~ 194 (318)
........ ..+ +..++.+++.+.......++.+|..+. +.|+...++.+.. ..+|+.+++.+.+.+.+..+
T Consensus 337 ~~~~~~~~-~~~---~~~~l~~~~~~~~~~~~~~~~~e~~p~-~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~--- 408 (438)
T PRK09952 337 LEAQSIFW-IVF---FSIMLANIAHDMVVCVQQPMFTEMFGA-SYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG--- 408 (438)
T ss_pred HHcCChHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHCCc-chhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 00111111 111 111234455555555667888898864 6788777765433 33565555555544443211
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040 195 HADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (318)
Q Consensus 195 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~ 227 (318)
.+|...+...++.+++..+.. +.+||+
T Consensus 409 -----~~~~~~~~~~~~~~~i~~v~~-~~~~~~ 435 (438)
T PRK09952 409 -----GSWHSVAIYLLAGCLISAMTA-LLMKDN 435 (438)
T ss_pred -----CCchHHHHHHHHHHHHHHHHH-HHcccc
Confidence 236666555555555444443 445664
No 144
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.05 E-value=1.4e-08 Score=94.48 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCChh----HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 37 DITAACWFTYLLLFLTDIGLSPR----GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~gls~~----~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
........++++.|..+.+.+.. ..+.+..+..+...+..+..|+++||+|||+. +..+.....++.....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~-~~~~~~~~~~~~~~~~---- 306 (408)
T PRK09874 232 QVATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKI-LITALIFSVLLLIPMS---- 306 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh-HHHHHHHHHHHHHHHH----
Confidence 33344455677888887622222 35666777788888999999999999999988 4556555554443221
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (318)
..+ +.+... +...+.+++.+...+...+...+..+ +++|++..+..+....+|..+++.+++.+.+
T Consensus 307 ---~~~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~---- 372 (408)
T PRK09874 307 ---FVQ--TPLQLG----ILRFLLGAADGALLPAVQTLLVYNSS-NQIAGRIFSYNQSFRDIGNVTGPLMGAAISA---- 372 (408)
T ss_pred ---Hhc--cHHHHH----HHHHHHHhhhHhhHHHHHHHHHHhCC-cccceeeehHHHHHHHHHHHhhHHHHHHHHh----
Confidence 111 122111 11234566666666666666666554 5678888888888888888887777665543
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (318)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e 226 (318)
..+|++.+.+.+++.++..+...+..++
T Consensus 373 ------~~g~~~~f~~~~~~~l~~~~~~~~~~~~ 400 (408)
T PRK09874 373 ------NYGFRAVFLVTAGVVLFNAVYSWNSLRR 400 (408)
T ss_pred ------hcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2468888887777777666655544444
No 145
>PRK12382 putative transporter; Provisional
Probab=99.05 E-value=2.2e-08 Score=92.96 Aligned_cols=157 Identities=17% Similarity=0.039 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040 40 AACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~ 119 (318)
......+.+.|+++.|.+. .+.......+...+++++.|++.||+||||. +..+..+.++++..... .+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~~~~~~~~~~~~~~~-------~~- 300 (392)
T PRK12382 232 FAVIGTFVSLYFASKGWAM--AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKV-AIVSLLVETVGLLLLWL-------AP- 300 (392)
T ss_pred HhHHHHHHHHHHHhcCCch--hHHHHHHHHHHHHHHHHHHHHHHHhcCCCee-hHHHHHHHHHHHHHHHH-------cc-
Confidence 3445567788888777654 4556667778888999999999999999988 55666666666543321 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchh
Q 021040 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLE 199 (318)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 199 (318)
+.....+ ...+.+++.+...+...+...+..+ +++|++..+..+....+|..+++.+.+.+.+.
T Consensus 301 -~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~---------- 364 (392)
T PRK12382 301 -TAWVALA----GAALTGAGCSLIFPALGVEVVKRVP-SQVRGTALGGYAAFQDIAYGVSGPLAGMLATS---------- 364 (392)
T ss_pred -cHHHHHH----HHHHHHHHHHhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1221111 1234556666555555566666654 57899999999888888888777666555532
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 021040 200 NQYRWIAYSSIFIGCCFVGIFLSR 223 (318)
Q Consensus 200 ~~~~~~~~i~~~~~~l~~~~~~~~ 223 (318)
.+|++.+.+.+.+.++..++..+.
T Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 365 FGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred hCchHHHHHHHHHHHHHHHHHHhh
Confidence 467878777766665555544433
No 146
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.03 E-value=4.6e-09 Score=100.06 Aligned_cols=167 Identities=12% Similarity=0.008 Sum_probs=102.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125 (318)
Q Consensus 46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 125 (318)
+.|.++.+.|.+....++......+...++.++.|+++||+|||+. +..+.++.+++...+.. .. ..+......
T Consensus 293 ~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~-~i~~~~~~~v~~~~l~~--~~---~~~~~~~~~ 366 (479)
T PRK10077 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--AF---YTQAPGIVA 366 (479)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHH-HHHhHHHHHHHHHHHHH--HH---hcCcccHHH
Confidence 3455555568887777777777888889999999999999999987 56677776666544321 10 001111111
Q ss_pred HHHHHHHHHHHHHHHhh-hHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhccCcccchhHHH
Q 021040 126 TISYCVFAAIFNVGWAA-TQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS--VSTAKTHADLENQY 202 (318)
Q Consensus 126 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~--~~~~~~~~~~~~~~ 202 (318)
.. .+ ++++++.+. ..+...++++|..+ +++|+++.++.+....+|.++++.+.+.+.. ... ...++
T Consensus 367 ~~--~~--~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~------~~~~~ 435 (479)
T PRK10077 367 LL--SM--LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLV------AHFHN 435 (479)
T ss_pred HH--HH--HHHHHHHhccccchhHHHhHhhCC-hhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchh------hhccC
Confidence 11 11 123333332 22334677788875 5789999999998888888887665533221 111 02345
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 203 RWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
++.+++.+++++++.++.+++.||+++
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 436 GFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred ccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 566666666666666666666777643
No 147
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.02 E-value=2.9e-11 Score=116.39 Aligned_cols=253 Identities=9% Similarity=0.084 Sum_probs=1.6
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc-------------
Q 021040 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST------------- 119 (318)
Q Consensus 53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~------------- 119 (318)
+.+++.++.|++.+.+-+...+..++..++.+|. +|-.|+.+|.++++++.++.. +|.-+.+.
T Consensus 32 RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~-hrprwig~g~~~~~~g~~l~~---lPhf~~~~y~~~~~~~~~~~~ 107 (539)
T PF03137_consen 32 RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRG-HRPRWIGIGALLMGLGSLLFA---LPHFLSGPYSYEEASNSNGNS 107 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcceeeecHHHHHHHHHHHh---ccHhhcCCCcccccccccccc
Confidence 3599999999999999999999999999999885 556678889999888866443 33221100
Q ss_pred ---------------------------cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040 120 ---------------------------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (318)
Q Consensus 120 ---------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 172 (318)
.+....+..+++..++.|+|.+...+...+++-|.++ +++-+...++.+...
T Consensus 108 ~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~-~~~splYiGi~~~~~ 186 (539)
T PF03137_consen 108 SISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVS-KKNSPLYIGILYAMS 186 (539)
T ss_dssp --------------------------------------------SSS---------------------------------
T ss_pred ccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccc-cccCccchhhhhHHh
Confidence 0000011122222234455555444444556666553 344556667777777
Q ss_pred HHHHHHHHHHHHHHHHhhccCc----------ccch--hHHHHHHHHHHHHHHHHHHHHHHhcccccccc---------c
Q 021040 173 MVANLSLYAIAFIVFSVSTAKT----------HADL--ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK---------M 231 (318)
Q Consensus 173 ~~g~~~~~~~~~~l~~~~~~~~----------~~~~--~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~---------~ 231 (318)
.+|-++|.++++..+..+-+.+ +.|. .-.|..-+++.+++.++.++..+.+-|+-+.. +
T Consensus 187 ~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~ 266 (539)
T PF03137_consen 187 ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKKLPGTSERQEEKESS 266 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCcccccchhhhh
Confidence 7777777777666554322211 1111 01232233556666666666555443332211 0
Q ss_pred c-c----------CCC---------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHH
Q 021040 232 G-L----------RGN---------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALV 291 (318)
Q Consensus 232 ~-~----------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~ 291 (318)
+ + +++ +.+....+++++||.|+...++..+..+...++.++.|.|++.+++.+++....+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l 346 (539)
T PF03137_consen 267 ERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLL 346 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 0 0 000 1233456788999999999999999999999999999999999999987544333
Q ss_pred H-HH----HHHHHHHHHHHHHHHH
Q 021040 292 P-AI----IYICSFIVSILLQVIS 310 (318)
Q Consensus 292 ~-~~----~~v~~~i~~~~~~~i~ 310 (318)
. .+ ..++.++++++.+|..
T Consensus 347 ~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 347 TGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp ------------------------
T ss_pred HhhhhcchhheehheEEEEEEEec
Confidence 2 22 2345555555555553
No 148
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.00 E-value=8e-09 Score=94.07 Aligned_cols=169 Identities=11% Similarity=0.024 Sum_probs=103.5
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh--ccCchHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR--FGHFKIWHGAGSVLVAVSF 104 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr--~Grr~~~l~~g~~~~~i~~ 104 (318)
..++.++..=+....+..+.|.|+.|. |.|...+++..+.+-.+...+.+++|++||| -|||.|.-++..++..++.
T Consensus 256 ~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~ 335 (448)
T COG2271 256 LLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASL 335 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 344444444445555667889999998 9999999999999999999999999999998 3899996666666666666
Q ss_pred HHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH--HhHhhhccccccCccchhHHHHHHHHHHHH-HHHHHHH
Q 021040 105 SSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ--VAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSLYA 181 (318)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~~~ 181 (318)
...|. . ++.+.....+. ++.+|+-.+. .-......|..| ++--+++.|....++.+ |...+.
T Consensus 336 ~~~w~--~-----~~~~~~l~~~~------l~~iGf~IyGPqmLiGl~a~e~~p-K~AaGtA~Gf~Glf~Yl~Ga~~a~- 400 (448)
T COG2271 336 VLYWL--A-----PNGSYLLDAIL------LFIIGFLIYGPQMLIGLAAAEFVP-KKAAGTATGFVGLFAYLIGAALAG- 400 (448)
T ss_pred HHHHc--C-----CCccHHHHHHH------HHHHHHHHhhHHHHHHHHHhcccc-HhhccchhchhhhHHHHhhHHhcC-
Confidence 65553 2 22222221211 1222222222 122334457665 45678888888888777 444332
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
..++... | ..+|...|.+..+.++++.+..
T Consensus 401 ---~~~g~i~-----d-~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 401 ---LPLGYIA-----D-TWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred ---CcceeeE-----e-cCCCcchHHHHHHHHHHHHHHH
Confidence 2233221 1 2467666655544444444433
No 149
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.99 E-value=1.2e-08 Score=99.44 Aligned_cols=255 Identities=11% Similarity=0.061 Sum_probs=166.6
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc----------------c
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI----------------L 117 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~----------------~ 117 (318)
.+++.++.|++...+-+...+...+..+..-|..|-| |+.+|.++++++.++... |.-+ .
T Consensus 127 F~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr-~Ig~G~~~m~lgsll~al---PHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 127 FKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPR-WIGIGLVLMGLGSLLFAL---PHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred cCCCCCcceeEeeecccchhhhhHhHHHhccccCccc-eeeechhHHHHHHHHHhC---hHHhcCcchhhhhhhhccccC
Confidence 3999999999999999999999999999999876655 588899999888765543 3111 0
Q ss_pred C--------------------------ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH
Q 021040 118 S--------------------------TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF 171 (318)
Q Consensus 118 ~--------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~ 171 (318)
+ ..+....++.+++-.++.|+|.+...+.-.+++-|... +++-....++.+.+
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk-~~~SplYlgi~~~~ 281 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVK-KKNSPLYLGILYSM 281 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCcccccccc-ccCCcHHHHHHHHH
Confidence 0 00001112233333345666666555555566666553 34445667777777
Q ss_pred HHHHHHHHHHHHHHHHHhhccC-------cccch--hHHHHHHHHHHHHHHHHHHHHHHhcccccccccc----------
Q 021040 172 TMVANLSLYAIAFIVFSVSTAK-------THADL--ENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG---------- 232 (318)
Q Consensus 172 ~~~g~~~~~~~~~~l~~~~~~~-------~~~~~--~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~---------- 232 (318)
..+|-++|.++++.......+. ++.|. .-.|..-|++.+.+.++.++..+++-||.++..+
T Consensus 282 ~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~~~~~~~~~~~~~ 361 (735)
T KOG3626|consen 282 AILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKSQKRKRARDLHVL 361 (735)
T ss_pred HHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccccccchhhhhccc
Confidence 7788777777766665543222 11221 1235445677888888888777776665443210
Q ss_pred --cC----CC-------CchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHH-HHHHHH
Q 021040 233 --LR----GN-------SHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVP-AIIYIC 298 (318)
Q Consensus 233 --~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~-~~~~v~ 298 (318)
++ ++ +.+.+..+++++||-|+..+++..+......++.+|+|.|++.++|.+++....+. .+...+
T Consensus 362 k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~ 441 (735)
T KOG3626|consen 362 KTESGGAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPA 441 (735)
T ss_pred ccccccccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhh
Confidence 00 01 12446678999999999999999999999999999999999999999986443333 344445
Q ss_pred HHHHHHHHHHHHHhh
Q 021040 299 SFIVSILLQVISLKL 313 (318)
Q Consensus 299 ~~i~~~~~~~i~~~~ 313 (318)
+.++.++.+.+.||+
T Consensus 442 ~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 442 AAVGIFLGGLIIKKF 456 (735)
T ss_pred hhhhhhccceeeeee
Confidence 555555555555554
No 150
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.97 E-value=2.6e-08 Score=90.74 Aligned_cols=130 Identities=18% Similarity=0.143 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 39 ~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
....+..+++.|+++. |+++.++|.....+.+...+..|+.|++|||+|.+|. +.+....++++...+.. .+....
T Consensus 233 ~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv-~~~~f~~~~~~~~~l~~--~~~~~~ 309 (417)
T COG2223 233 GFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRV-TLAVFVGMALAAALLSL--FLTGFG 309 (417)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhH-HHHHHHHHHHHHHHHHc--cccccc
Confidence 3444667899999986 9999999999999999999999999999999998888 45555555565544432 111111
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (318)
...+....+..++......++|.+ ....+++.+.+ +|-+.+.++.....++|+.
T Consensus 310 ~~~~~~~~~~~~l~l~~~~G~GnG----svfk~Ip~if~--~~~G~v~G~vga~G~lGGf 363 (417)
T COG2223 310 HGGSFVVFVAVFLALFVFAGLGNG----SVFKMIPVIFP--KETGAVTGIVGAIGGLGGF 363 (417)
T ss_pred cCcchHHHHHHHHHHHHHhccCcc----hheeechHHHH--hhhhHHHHHHHHhcccccc
Confidence 011122222222222222334433 44556666653 4667778877777666654
No 151
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=98.97 E-value=3e-08 Score=93.32 Aligned_cols=144 Identities=11% Similarity=0.135 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
+...........+.+.|.++. + +..+.+.+..+..+...++.++.|+++||+|||+.+ ..+.++.+++....+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~-~~~~~~~~~~~~~~~~--- 306 (437)
T TIGR00792 232 LFYNLAFNIKNGVQVYYFTYVLG-DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILF-AGGILLMVLGYLIFFF--- 306 (437)
T ss_pred HHHHHHHHHHcchhheeEeeecC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH-HHHHHHHHHHHHHHHH---
Confidence 333333333333334444444 5 566778888888899999999999999999999884 5677666666554431
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC------ccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN------STSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
.++ +..... +..++.+++.+.......++++|..+. +++++...+..+....+|..+++.+.+.+
T Consensus 307 ----~~~-~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~l 377 (437)
T TIGR00792 307 ----AGS-NLPLIL----VLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLI 377 (437)
T ss_pred ----cch-hHHHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 112111 112345666666666667777776531 23467888999899999999888888777
Q ss_pred HHhhc
Q 021040 187 FSVST 191 (318)
Q Consensus 187 ~~~~~ 191 (318)
.+..+
T Consensus 378 l~~~G 382 (437)
T TIGR00792 378 LGIIG 382 (437)
T ss_pred HHHcC
Confidence 76544
No 152
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.97 E-value=5.6e-13 Score=126.07 Aligned_cols=234 Identities=13% Similarity=0.111 Sum_probs=138.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc-chhHHHHHHHHHHHHH
Q 021040 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS-TLKVETISYCVFAAIF 136 (318)
Q Consensus 58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 136 (318)
..+.+++.+...++..+++++.|.++||+|||+.+ ..+.++..++..... +++.. +.... .+.+++.
T Consensus 45 ~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~-~~~~~~~~i~~~~~~-------~~~~~~~~~~~----~~~R~~~ 112 (451)
T PF00083_consen 45 SLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPAL-IISALLMIIGSILIA-------FAPSYNNFWML----LIGRFLI 112 (451)
T ss_pred HHHHHHHHHHHHhhhcccccccccccccccccccc-ccccccccccccccc-------ccccccccccc----ccccccc
Confidence 35678999999999999999999999999999985 567776666654332 22200 12222 2233457
Q ss_pred HHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHH
Q 021040 137 NVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCF 216 (318)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~ 216 (318)
|++.+........++.|..+ ++.|++..++.+....+|.+++..++... .... ....||+.+.+.++++++.
T Consensus 113 G~~~g~~~~~~~~~~~E~~~-~~~R~~~~~~~~~~~~~G~~~~~~~~~~~-~~~~------~~~~Wr~~~~~~~~~~l~~ 184 (451)
T PF00083_consen 113 GFGIGGAYVVSPIYISEIAP-PKHRGFLSSLFQLFWALGILLASLIGYIV-SYYS------DNWGWRILLIFGAIPSLLV 184 (451)
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccc-cccc------ccccccccccccccccccc
Confidence 77777777777788889886 57889988888888777777665443222 1111 0245887776666555544
Q ss_pred HHHHHhccccccc-----c--ccc-----C---------C----CCch------HHHHHHHHhcHHH----HHHHHHHHH
Q 021040 217 VGIFLSRTEEPRL-----K--MGL-----R---------G----NSHA------RISWAYWFKKILY----YQVALVYML 261 (318)
Q Consensus 217 ~~~~~~~~~e~~~-----~--~~~-----~---------~----~~~~------~~~~~~~~~~~~~----~~~~~~~~~ 261 (318)
++...++||+|. + ++. + + .++. +..++++++++.. ...+....+
T Consensus 185 -~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~ 263 (451)
T PF00083_consen 185 -LLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKRLLIALLLQFF 263 (451)
T ss_pred -cccccccccccceecccccccccccccccccccccccccccccccccccccccceeeeecccccccccccccccccccc
Confidence 334467788742 1 000 0 0 0000 1235566666442 222222222
Q ss_pred HHHHHHHHHHHhHHhhhhccccccc-hh-hHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 262 TRLVVNVSQAYLAFYVINDLRMGQS-AK-ALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 262 ~~~~~~~~~~~~~~yl~~~~g~~~~-~~-~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
..+.......++..++.+..+.++. .. ........++.+++.++.||++||
T Consensus 264 ~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr 316 (451)
T PF00083_consen 264 QQFSGINFIFYYSPSIFENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRR 316 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2222223334455555566676654 22 222334556777888999999998
No 153
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.96 E-value=5.1e-08 Score=90.57 Aligned_cols=166 Identities=16% Similarity=0.046 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+..........++.++|++|.|.++.++|++.....+ ...++.++.|++.||+|+||.. ..+.+..++.....+.
T Consensus 217 ~~l~~~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l-~~~~~~~~~~~~~~~~-- 293 (390)
T TIGR02718 217 ALLSAMTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTF-ILGVGLAGSLALLWFA-- 293 (390)
T ss_pred HHHHHHHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHH--
Confidence 34445555566678899999999999999999888765 4556688999999999998874 4454443222211110
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
...... ...... . +. ...+.+++.+...+...+...+..+++++|++..+..+...++|..+++.+++.+.+.
T Consensus 294 ~~~~~~-~~~~~~-~--~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~-- 366 (390)
T TIGR02718 294 QAAFWL-APGIAV-A--WS-CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR-- 366 (390)
T ss_pred HHHccc-CCcHHH-H--HH-HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 000000 001111 1 11 1112233444444444455444444446788998998888899988888777766643
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHH
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCF 216 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~ 216 (318)
.+|+..+.+.+++.++.
T Consensus 367 --------~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 367 --------FGYAGGFLSGTVLAVLA 383 (390)
T ss_pred --------HccHHHHHHHHHHHHHH
Confidence 34555665555444443
No 154
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=98.96 E-value=1.2e-07 Score=87.90 Aligned_cols=148 Identities=11% Similarity=0.103 Sum_probs=105.0
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 26 VLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
.+.+.+..+..+.......++.++|+++.|.+..++|.+..+..+...+..++.|++.||+|+|+. +.++.+...+.+.
T Consensus 207 ~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~-l~~~~~~~~~~~~ 285 (382)
T TIGR00902 207 NLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDL-LLISAIACVGRWA 285 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHH-HHHHHHHHHHHHH
Confidence 345555556566777778889999998889999999999999999999999999999999999887 5678887777765
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAF 184 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~ 184 (318)
... +.+ +.+.. .....+.++.++...++...++.+. + +++|++..+..+ ....+|..+++.+++
T Consensus 286 ~~~-------~~~--~~~~~----~~~q~l~g~~~~~~~~~~~~~i~~~-~-~~~~~~~q~~~~~~~~g~g~~~g~~~~G 350 (382)
T TIGR00902 286 IIG-------AIE--AFPLI----FLLQILHCGTFAVCHLAAMRYIAAQ-P-GSEIAKLQALYNALAMGGLIAIFTAFAG 350 (382)
T ss_pred HHH-------hHh--hHHHH----HHHHHHHHHHHHHHHHHHHHHHHhC-C-HhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 111 12211 1223456677777766666677765 4 466777777654 345677777777776
Q ss_pred HHHHh
Q 021040 185 IVFSV 189 (318)
Q Consensus 185 ~l~~~ 189 (318)
.+.+.
T Consensus 351 ~l~~~ 355 (382)
T TIGR00902 351 FIYPT 355 (382)
T ss_pred HHHHh
Confidence 66654
No 155
>PRK03893 putative sialic acid transporter; Provisional
Probab=98.96 E-value=2.4e-08 Score=95.60 Aligned_cols=132 Identities=11% Similarity=0.045 Sum_probs=85.3
Q ss_pred HHHHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 43 WFTYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 43 ~~~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
...++|.|+++ .|.+..++|++.+...+...++.++.|+++||+|||+.+ ..+..+..+....+.. . .+..
T Consensus 294 ~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~-----~~~~ 365 (496)
T PRK03893 294 IQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAY-VCSLLISQLLIIPVFA--I-----GGAN 365 (496)
T ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHhh--c-----cccH
Confidence 44678899975 499999999999999999999999999999999999884 4454444444332221 1 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
.. ...... .+.+...........+++.|..+ +++|++..++.+....+|..+++.+++.+.
T Consensus 366 ~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~ 426 (496)
T PRK03893 366 VW-VLGLLL---FFQQMLGQGISGLLPKLIGGYFD-TEQRAAGLGFTYNVGALGGALAPILGALIA 426 (496)
T ss_pred HH-HHHHHH---HHHHHHhcccchhhHHHHHhhCC-HHHhhcccchhhhhhhHHHHHHHHHHHHHh
Confidence 11 111111 11221111222344556677765 578999999888888888877766665554
No 156
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.94 E-value=7.6e-07 Score=85.47 Aligned_cols=162 Identities=14% Similarity=0.082 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHH-HHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVM-LSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~-~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
........+.++|+.+. |.+..++|++. ....+...++.++.|+++||+||||.. ..+.++.++.....+. ..
T Consensus 236 ~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l-~i~~~l~~l~~l~~~~--l~-- 310 (491)
T PRK11010 236 LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRAL-MIFGILQGVSNAGYWL--LS-- 310 (491)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHH--HH--
Confidence 33344455677887764 99999999997 466788999999999999999998874 4444443433221110 00
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTH 195 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 195 (318)
... .+........ ++..++.+....+..+...++.+ ++.+++..+..+...++|..+++.+.+.+.+.
T Consensus 311 ~~~-~~~~~l~~~~----~l~~~~~g~~~~~~~a~~~~l~~-~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~------ 378 (491)
T PRK11010 311 ITD-KNLYSMGAAV----FFENLCGGMGTAAFVALLMTLCN-KSFSATQFALLSALSAVGRVYVGPVAGWFVEA------ 378 (491)
T ss_pred hcc-ccHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 111 1121111111 12222223233334555566664 35667777777777777766555444444432
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 196 ADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 196 ~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
.+|+..+.+.++++++..++.
T Consensus 379 ----~G~~~~f~~~~~~~l~~l~~~ 399 (491)
T PRK11010 379 ----HGWPTFYLFSVAAAVPGLLLL 399 (491)
T ss_pred ----hChHHHHHHHHHHHHHHHHHH
Confidence 357766666655555544443
No 157
>PRK10091 MFS transport protein AraJ; Provisional
Probab=98.94 E-value=8.5e-08 Score=88.89 Aligned_cols=151 Identities=12% Similarity=0.166 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
...+++++++++. |.++.+.++..+...+...++.++.|+++||+||||. +..+..+.+++...+.. ..+.
T Consensus 217 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~-~~~~~~~~~i~~~~~~~-------~~~~ 288 (382)
T PRK10091 217 AWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRI-AAVTDFIIVLALLMLFF-------FGGM 288 (382)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhH-HHHHHHHHHHHHHHHHH-------HHhh
Confidence 3456778888875 9999999999999999999999999999999999887 45566666666543321 0111
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLEN 200 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 200 (318)
.....+.. ++.+.+......+......+..+++++++... .+....+|..+++.+++.+.+. ..
T Consensus 289 -~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~Gp~~~G~l~~~---------~~ 352 (382)
T PRK10091 289 -KTASLIFA----FICCAGLFALSAPLQILLLQNAKGGELLGAAG--GQIAFNLGSAIGAYCGGMMLTL---------GL 352 (382)
T ss_pred -HHHHHHHH----HHHHHHHHhhhHHHHHHHHHhCCcchHHHHHH--HHHHHHHHHHHHHHHhHHHHHc---------cc
Confidence 11111111 12333333223332222222222333344332 2445567777777666665542 13
Q ss_pred HHHHHHHHHHHHHHHH
Q 021040 201 QYRWIAYSSIFIGCCF 216 (318)
Q Consensus 201 ~~~~~~~i~~~~~~l~ 216 (318)
+|++.+.+.+.+..+.
T Consensus 353 ~~~~~~~~~~~~~~~~ 368 (382)
T PRK10091 353 AYNYVALPAALLSFAA 368 (382)
T ss_pred CcchHHHHHHHHHHHH
Confidence 4666665555444333
No 158
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=98.93 E-value=4.8e-09 Score=99.65 Aligned_cols=159 Identities=11% Similarity=0.051 Sum_probs=99.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHH-HHHHHHHHHHHHHhCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHG-AGSVLVAVSFSSVFGG 110 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~-~g~~~~~i~~~~~~~~ 110 (318)
+...........++++|+++.|.+..+.++++++..+...+.+|+.|.++||. ++|+..+. .+.+..+++.....
T Consensus 251 ~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-- 328 (455)
T TIGR00892 251 VIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-- 328 (455)
T ss_pred HHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33334444455788899888899999999999999999999999999999973 33333222 22222222222111
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
..+ +.+... +...+.+++.+.......+++.|..+ +++|++..++.+....+|.++++.+++.+.+..
T Consensus 329 -----~~~--~~~~~~----i~~~~~G~~~g~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~ 396 (455)
T TIGR00892 329 -----LAG--DYTGLV----IYCIFFGLSFGSVGALLFEVLMDLVG-AQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT 396 (455)
T ss_pred -----Hhc--hHHHHH----HHHHHHHHHhchHHHHHHHHHHHHhh-HHHHhhHHhHHHHHHHHHHHccccceeeeehhc
Confidence 111 122111 12235667777666666777788775 578899999998888888887766655544321
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHH
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCC 215 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l 215 (318)
.+|++.+++.+++.++
T Consensus 397 ---------g~~~~~f~~~~~~~li 412 (455)
T TIGR00892 397 ---------KNYKYIFYASGSIVVS 412 (455)
T ss_pred ---------CCcchHHHHhhHHHHH
Confidence 1466666555444333
No 159
>PRK15075 citrate-proton symporter; Provisional
Probab=98.93 E-value=1.1e-07 Score=89.66 Aligned_cols=139 Identities=14% Similarity=0.050 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH-HHHHHhCCCCCCc
Q 021040 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV-SFSSVFGGCMPCR 115 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i-~~~~~~~~~~~~~ 115 (318)
........+.|.|+++. |.+..+.++......+...++.+..|+++||+||||..+ .+....++ ....... .+
T Consensus 252 ~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~-~~~~~~~~~~~~~~~~--~~-- 326 (434)
T PRK15075 252 VSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLI-AFTVLAILTAYPALSW--LV-- 326 (434)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHHHH--HH--
Confidence 33445667889999885 999999999988899999999999999999999999854 44333222 1111110 00
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~ 188 (318)
...+........ .+.+++.+...........|..| +++|+...++.+. +..+++.+++.+.+.+.+
T Consensus 327 --~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~e~~p-~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~ 393 (434)
T PRK15075 327 --AAPSFARMLAVE----LWLSFLYGSYNGAMVVALTEVMP-AEVRTAGFSLAYSLATAIFGGFTPAISTWLIH 393 (434)
T ss_pred --cCCchHHHHHHH----HHHHHHHHHHHhhHHHHHHHHCC-CCccchheeHHHHHHHHHHhhhHHHHHHHHHH
Confidence 111111111111 12233444444444556778776 5788888776433 333333344444444443
No 160
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=98.92 E-value=1.1e-07 Score=88.64 Aligned_cols=133 Identities=10% Similarity=0.019 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
.+..+.|.|+.+. |.++.+.|+......+...++.++.|+++||+||||. +..+.+..+++...... .+. ....
T Consensus 233 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~g~~~~~~--~~~--~~~~ 307 (406)
T PRK15402 233 AWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSL-IRMGLWPMVAGLLLAAL--ATV--ISSH 307 (406)
T ss_pred HHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HHH--cccc
Confidence 3445567777775 9999999998877778888999999999999999887 55676666555443321 110 0111
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
+..+..+. .++.+++.+...++....... .+ +++|+++.+..+....+|..+++.+.+.
T Consensus 308 ~~~~~~~~----~~~~g~g~~~~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~g~~~~~~ 366 (406)
T PRK15402 308 AYLWLTAG----LSLYAFGIGLANAGLYRLTLF-SS-DVSKGTVSAAMGMLSMLIFTVGIELSKH 366 (406)
T ss_pred cHHHHHHH----HHHHHHHHHHHhhhHHHHHhh-hc-cccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12221111 134555555544443333322 22 3788999998888877777665544433
No 161
>PRK12307 putative sialic acid transporter; Provisional
Probab=98.92 E-value=7.9e-08 Score=90.18 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
...++|.|+++.|.++.+.+...++..+...+++++.|+++||+|||+. +..+.+..++....+.. .+ ....
T Consensus 250 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~~~~~--~~-----~~~~ 321 (426)
T PRK12307 250 IFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWGLCADRIGLKKT-FSIGLLMSFLFIFPLFR--IP-----QDNY 321 (426)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHHHHHHHHHHHHHHH--Hc-----cccH
Confidence 4567888888889999999999999999999999999999999999987 45565555444433321 11 1111
Q ss_pred hHHHHHHHHHHHHHHHHH--hhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 123 KVETISYCVFAAIFNVGW--AATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
. .+.. ++++.+. ..........+.|..+ ++.|+++.++.+....+|+.+++.+.+.+.+
T Consensus 322 ~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~ 382 (426)
T PRK12307 322 L--LLGA----CLFGLMATNVGVGGLVPKFLYDYFP-LEVRGLGTGLIYNLAATSGTFNSMAATWLGI 382 (426)
T ss_pred H--HHHH----HHHHHHHhcccHhHHHHHHHHHhCc-HHHHhhhhhHHHHHHhHHHHHHHHHHHHHHH
Confidence 1 1111 1122211 1112223455677775 5789999998887778887777666655543
No 162
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.91 E-value=1.2e-07 Score=86.72 Aligned_cols=138 Identities=12% Similarity=0.090 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
........++|.|+++.|.+..+.|.+.++..+...+++++.|+++||+|+||..+.++.++.+++...+.. .
T Consensus 211 ~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~--~----- 283 (355)
T TIGR00896 211 GLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLF--A----- 283 (355)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHH--h-----
Confidence 344455678899998889999999999999999999999999999999965554455666666665543321 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
++.. . .. . ..+.+++.+...+...+...+..+++++++...++.+....++..+++.+.+.+.+.
T Consensus 284 ~~~~-~--~~-~---~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~ 348 (355)
T TIGR00896 284 PMHG-L--WA-W---ALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDI 348 (355)
T ss_pred hhhH-H--HH-H---HHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 1 11 1 134566666655444445444444456677888877777777777766666555543
No 163
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=98.91 E-value=5.5e-08 Score=90.05 Aligned_cols=134 Identities=13% Similarity=0.041 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
....+++.|+++. |.+..+.+++.+...+...++.++.|+++||+||||.. ..+.+..++.....+. . . .
T Consensus 256 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~-~~~~~~~~~~~~~~~~--~----~--~ 326 (405)
T TIGR00891 256 PIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAY-VCSLLAGQLLIIPVFA--I----G--A 326 (405)
T ss_pred hhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhh-HHHHHHHHHHHHHHHH--h----C--C
Confidence 4446678888875 99999999999999999999999999999999999884 4455444333222221 1 1 1
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
+.....+.. ++.+++.........+++.|..+ +++|+++.+..+....+|..+++.+.+.+.+.
T Consensus 327 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~ 390 (405)
T TIGR00891 327 NVAVLGLGL----FFQQMLVQGIWGILPKHLGEYFP-TDQRAAGLGFTYQLGNLGGALAPIIGALLAQR 390 (405)
T ss_pred chHHHHHHH----HHHHHHHccchhhHHHHHhhhCC-cchhHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 112111111 22333333333345567778775 57899999998888888888877776666543
No 164
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=98.88 E-value=1e-07 Score=90.05 Aligned_cols=168 Identities=9% Similarity=-0.024 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH--HHHHhCCCCCC
Q 021040 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS--FSSVFGGCMPC 114 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~--~~~~~~~~~~~ 114 (318)
........++|.|+++. |.++.+.++...+..+...++.++.|+++||+|++|... .+.....+. ....+. .
T Consensus 265 ~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~~~~~~~--~-- 339 (438)
T TIGR00712 265 LLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGA-TGVFFMTLVTIAVIVYW--M-- 339 (438)
T ss_pred HHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccH-HHHHHHHHHHHHHHHHH--h--
Confidence 33345567889999986 999999999999999999999999999999997544312 232222111 111110 0
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccC
Q 021040 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN-LSLYAIAFIVFSVSTAK 193 (318)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~ 193 (318)
.+..+.+... ..+ +..+++.............|..+ +++|+++.++.+....+|+ ++++.+.+.+.+.
T Consensus 340 --~~~~~~~~~~--~~~--~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~---- 408 (438)
T TIGR00712 340 --NPAGNPLVDM--ICM--IVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF---- 408 (438)
T ss_pred --cCCCchHHHH--HHH--HHHHHHHccHHHHHHHHHHHhcC-hhheeeehhhhchHHHhhhhhhcchhHHHHHHh----
Confidence 0111112111 111 12222211111111234456665 5789999998877666653 4565555555532
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040 194 THADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (318)
Q Consensus 194 ~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~ 227 (318)
.+|.+.+.+.++..+++.+...+..||+
T Consensus 409 ------~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (438)
T TIGR00712 409 ------FGWDGGFMVMIGGSILAVILLIVVMIGE 436 (438)
T ss_pred ------ccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3466676666655666666666666775
No 165
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.87 E-value=4.6e-07 Score=84.49 Aligned_cols=192 Identities=14% Similarity=0.099 Sum_probs=129.9
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIG-LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g-ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~ 100 (318)
+.++.+.+.+..+..++.....+.|.+.|++|.| .+....|.+.+++.+...+.-...+++..|+|.|+. +.++.+..
T Consensus 205 k~~~~~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~l-l~~a~~~~ 283 (400)
T PF03825_consen 205 KNPRFLVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWL-LLLALVAY 283 (400)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHH
Confidence 3455566667777788888889999999999995 888999999999999999999999999999999887 56666665
Q ss_pred HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHH-HHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAF-TMVANLSL 179 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-~~~g~~~~ 179 (318)
++=+.+... ..++ .+.......+-..+.++.++........++.+..| ++.|+++.++.+.. ..+|..++
T Consensus 284 ~vR~~l~a~-------~~~~-~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p-~~~~at~Q~l~~~~~~Glg~~iG 354 (400)
T PF03825_consen 284 AVRWLLYAY-------FSDP-WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAP-PELRATAQGLYSALSFGLGGAIG 354 (400)
T ss_pred HHHHHHHHH-------hcCC-cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhhHHHHHH
Confidence 554433221 1111 11111111111124667777777666677777765 57888888876654 56888888
Q ss_pred HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~ 227 (318)
..+++.+.+.++. +....|...+.+.+++.++..++..++-||+
T Consensus 355 ~~igG~l~~~~g~----~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 355 SLIGGWLYDAFGA----RGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHhcc----hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 8888888876653 1122344444556666666666666666665
No 166
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.87 E-value=3e-07 Score=86.70 Aligned_cols=126 Identities=13% Similarity=0.070 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
........+++|.|+++. |.+..+.+...++..+...+.+++.|+++||+||||.. .++.++.++....... ...
T Consensus 256 ~~~~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~-~~~~~~~~~~~~~~~~-~~~-- 331 (432)
T PRK10406 256 SLCFYTFTTYMQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSM-LCFGSLAALFTVPILS-ALQ-- 331 (432)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHHHHHH-HHH--
Confidence 444555667899999875 99999999999888888899999999999999999874 4444333222221110 000
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHH
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTM 173 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~ 173 (318)
...+..... ... .+..++.+........+.+|..| ++.|+.+.++.+...+
T Consensus 332 --~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~e~fp-~~~r~t~~g~~~~~g~ 382 (432)
T PRK10406 332 --NVSSPYAAF-GLV---MCALLIVSFYTSISGILKAEMFP-AQVRALGVGLSYAVAN 382 (432)
T ss_pred --cCCcHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHCC-CCccchhhhHHHHHHH
Confidence 011111111 111 11112222223345567788886 5789999988765433
No 167
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.87 E-value=1.4e-07 Score=89.82 Aligned_cols=178 Identities=13% Similarity=0.020 Sum_probs=97.2
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH-------HHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW-------HGAGSV 98 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~-------l~~g~~ 98 (318)
+...+..+...........++|.|+++. |.+..+.|+..++..+...++.++.|+++||+++||.. +..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 343 (465)
T TIGR00894 264 WAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIG 343 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 4445555555566666678899999886 99999999999999999999999999999987654321 111111
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
....+..... .+ ... .+........ .+.+.+.+...........|.. ++.++.+.++.+....+|..+
T Consensus 344 ~~~~~~~~~~---~~--~~~-~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~l~~~i 411 (465)
T TIGR00894 344 GLGPGIFAYA---LP--YLS-AAFYLTIIIL----TLANAVSSGPLAGVLINSLDLA--PRFLGFIKGITGLPGFIGGLI 411 (465)
T ss_pred HHHHHHHHHH---HH--HcC-CchHHHHHHH----HHHHHHhhhhhhhhhhchhhcC--hhHHHHHHHHHHHHHHHHHHH
Confidence 1111111110 00 001 1111111111 1222222222223333444544 246777777777776666655
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSR 223 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~ 223 (318)
++. +.+.+.+. +...+|...+.+.++..++..++....
T Consensus 412 ~p~----l~g~~~~~---~~~~~~~~~f~~~~~~~~i~~i~~~~~ 449 (465)
T TIGR00894 412 AST----LAGNILSQ---DSKNVWLIVFLIMAFVNILCVIFYLIF 449 (465)
T ss_pred HHH----hhheeeCC---CCchHHHHHHHHHHHHHHHHHHHeeee
Confidence 443 33332210 012458888888777766665555433
No 168
>PRK09848 glucuronide transporter; Provisional
Probab=98.86 E-value=2.5e-07 Score=87.62 Aligned_cols=143 Identities=13% Similarity=0.065 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 37 DITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
...........+.|+++. |.++...++......+...++.|+.++++||+|+|+. +.+|.++.+++...++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~-~~~g~~~~~i~~~~~~~------ 313 (448)
T PRK09848 241 LISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNT-FLIGALLGTCGYLLFFW------ 313 (448)
T ss_pred HHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH------
Confidence 333334444455566665 8777766665655567778899999999999999988 46677777776554432
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+..+.+... +...+.++|.+...+...++.+|..++. ++++...+..+....+|..++..+.+.++..
T Consensus 314 -~~~~~~~~~~----~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~ 388 (448)
T PRK09848 314 -VSVWSLPVAL----VALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGL 388 (448)
T ss_pred -cCchhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222111 1123466777777777778888876422 1247778888888889988888877776665
Q ss_pred hc
Q 021040 190 ST 191 (318)
Q Consensus 190 ~~ 191 (318)
.+
T Consensus 389 ~G 390 (448)
T PRK09848 389 SG 390 (448)
T ss_pred cC
Confidence 44
No 169
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=98.86 E-value=1.7e-07 Score=89.31 Aligned_cols=142 Identities=15% Similarity=0.081 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCC
Q 021040 36 NDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC 114 (318)
Q Consensus 36 ~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~ 114 (318)
..........++|.|+++. |.++.+.|+......+...++.++.|++.||+|||+. +..+..+.+++...+.. .
T Consensus 267 ~~~~~~~~~~~~p~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~g~~~~~~~~~~~~~---~- 341 (485)
T TIGR00711 267 LGLGLYGSFYLLPLYLQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKL-VTIGLILYAVGFYWRAF---T- 341 (485)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHH-HHHHHHHHHHHHHHHhc---c-
Confidence 3344444556788899886 9999999999999999999999999999999999887 56677766666554431 0
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
..++.+....... ..+.+++.+....+......+..+ +++|+.+.+..+....+|+.++..+.+.+..
T Consensus 342 -~~~~~~~~~~~~~----~~l~g~g~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~ 409 (485)
T TIGR00711 342 -FTPDTPFLAIALP----QFIRGFGMGCFFMPLTTIALSGLP-PHKIARGSSLSNFTRQLGGSIGTALITTILT 409 (485)
T ss_pred -CCCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122211111 234566666655555555555554 5789999999988888888887766655543
No 170
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=98.85 E-value=1.6e-07 Score=85.56 Aligned_cols=130 Identities=9% Similarity=0.029 Sum_probs=94.2
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (318)
Q Consensus 45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 123 (318)
.+.|.|.++. |.+..+.|.+.....+...++.++.|+++||+|||+. +..+....+++...... .++ +.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~-~~~ 302 (365)
T TIGR00900 232 ALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMAL-MTGAIFVIGLAILVVGL-------TPP-NFP 302 (365)
T ss_pred HHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHHHHHh-------hch-hHH
Confidence 5667777774 9999999999999999999999999999999999887 45555555555443321 111 122
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
.. .+..++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+.+.+.+
T Consensus 303 ~~----~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~ 362 (365)
T TIGR00900 303 LF----LVLWFAIGVGYGPINVPQGTLLQRRVP-AELLGRVFGAQFSLSHAAWPLGLILAGPLAD 362 (365)
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 122245667777777777788888875 5789999999999988888887777666554
No 171
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=98.84 E-value=1.3e-07 Score=90.40 Aligned_cols=153 Identities=16% Similarity=0.033 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc-----hHHHH-HHHHHHHHHHHHHhCCCCCC
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF-----KIWHG-AGSVLVAVSFSSVFGGCMPC 114 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr-----~~~l~-~g~~~~~i~~~~~~~~~~~~ 114 (318)
....++|.|+.+. |++..+.+.+.++..+...++.++.|+++||+||| |.++. ...++.++... .+ +
T Consensus 270 ~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~-~~----~- 343 (476)
T PLN00028 270 TMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCI-WL----G- 343 (476)
T ss_pred HHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHH-Hh----c-
Confidence 3456678888876 99999999999999999999999999999999875 22222 22222222222 11 1
Q ss_pred cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Q 021040 115 RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT 194 (318)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~ 194 (318)
... +........ ++.+++.........++.+++. +++|+...++.+.+.++|..+++ .+.+. .
T Consensus 344 -~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~g~lg~~i~~----~l~~~-~--- 406 (476)
T PLN00028 344 -RAN--SLGAAIVVM----ILFSIFVQAACGATFGIVPFVS--RRSLGVISGLTGAGGNVGAVLTQ----LLFFT-G--- 406 (476)
T ss_pred -ccc--hHHHHHHHH----HHHHHHHHHhhhhhcccCcccC--hhhchhhhhhhhccccHHHHHHH----HHHHh-c---
Confidence 111 112111111 1233333323333445555653 35788888887666555555433 22221 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 195 HADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 195 ~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
...+|++.+++.+++.+++.++.
T Consensus 407 ---~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 407 ---SSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred ---CCccHhhHHHHHHHHHHHHHHHH
Confidence 01357777777776666555444
No 172
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.84 E-value=3.1e-08 Score=91.04 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=96.5
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHH
Q 021040 56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAI 135 (318)
Q Consensus 56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 135 (318)
++....+.+..+..+++.++|+++|+++||+|||+++ ...+++++++....- .+.+.. +....+.+.+.++.+
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vY-G~~liImIi~t~~~~---~s~~~~---~~~~~m~~L~~~R~~ 153 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVY-GKELIIMIICSALSG---LSVGTT---SPLGVMMTLCFFRFL 153 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhh-hHHHHHHHHHHHHhc---cCCCCC---CCcchhhHHHHHHHH
Confidence 6778889999999999999999999999999999996 456777777765332 232221 111122333445567
Q ss_pred HHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-c-c---cchhHHHHHHHHHHH
Q 021040 136 FNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAK-T-H---ADLENQYRWIAYSSI 210 (318)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-~-~---~~~~~~~~~~~~i~~ 210 (318)
.|+|.+.=.+-..+..+|.+. .+.|+...+..-....+|.+.++.++..+..-+... + . ......||..+.+.+
T Consensus 154 LGiGIGGDYPlSAtI~SE~an-~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~ 232 (538)
T KOG0252|consen 154 LGIGIGGDYPLSATIMSESAN-KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGA 232 (538)
T ss_pred hhccccCCCcchHHHhhhhhh-hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHH
Confidence 888887755544555666653 567876655444444445544444443333322211 0 0 011245776655544
Q ss_pred HHHHHHHHHHHhcccccc
Q 021040 211 FIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 211 ~~~~l~~~~~~~~~~e~~ 228 (318)
.+++ ..+..-...||++
T Consensus 233 vpa~-~~ly~Rl~M~Et~ 249 (538)
T KOG0252|consen 233 VPAL-LVLYFRLKMPETA 249 (538)
T ss_pred HHHH-HHHHhhhcCCcch
Confidence 4433 3344445567764
No 173
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.82 E-value=1.8e-07 Score=88.28 Aligned_cols=171 Identities=15% Similarity=0.068 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
+..|-..++++.|++..++-++.....+...+.......+.||.|||+. ++.+...+.+..+.+.. ..-+......
T Consensus 289 i~~Yst~i~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpL-ll~~~~~~~~~~~~~~~---~~~l~~~~~~ 364 (485)
T KOG0569|consen 289 IFFYSTSIFKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPL-LLISLSLMAVALLLMSI---ALFLSNSFGS 364 (485)
T ss_pred eHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHHHHHH---HHHHHHHhhh
Confidence 3345556666679999999999999999999999999999999999876 56677666666544321 1001111101
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHh-hhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
+..+. .+...+++.++++....|.. -+.+|+++ ++.|..+.++....+++.+.+......|+-..++ +
T Consensus 365 ~~~y~-~i~~~~~~~~~f~~G~gpi~~fi~aELf~-~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g---------~ 433 (485)
T KOG0569|consen 365 WLSYL-CIAAIFLFIISFAIGPGPIPWFIGAELFP-QSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG---------P 433 (485)
T ss_pred HHHHH-HHHHHHHHHHhhhcCCCchhHHHHHHhCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------c
Confidence 11111 01111234445544433433 35688886 5789999999888888888877766655554433 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~~ 230 (318)
+.++++.+.+.++.+..++.+||++.+
T Consensus 434 --~~filF~i~~~~~~i~~~~~lPETkgr 460 (485)
T KOG0569|consen 434 --YVFILFVIPLAIFLIYLYRYLPETKGR 460 (485)
T ss_pred --hhhHHHHHHHHHHHHHHHHhCcccCCC
Confidence 456677777888888888999998644
No 174
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.82 E-value=2.1e-07 Score=89.41 Aligned_cols=137 Identities=20% Similarity=0.141 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC
Q 021040 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS 118 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~ 118 (318)
......++|.|+++. |.|+.+.|+.+....+...++.++.|++.||+|||+. +..|.++.+++...+.. .. .
T Consensus 275 ~~~~~~~~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~-~~~g~~~~~~~~~~l~~--~~----~ 347 (495)
T PRK14995 275 LVGFELLMAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLV-ATGGMALSALSFYGLAM--TD----F 347 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHHHHHH--hc----C
Confidence 334446778888887 9999999999999999999999999999999999876 56677776666543321 11 1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 119 TSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
..+.+.... ..++.+++.+....+......+..+ +++++.+.+..+...++|..+|..+.+.+..
T Consensus 348 ~~~~~~~~~----~~~l~G~g~g~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 348 STQQWQAWG----LMALLGFSAASALLASTSAIMAAAP-PEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred CCchHHHHH----HHHHHHHhHHHHHHHHHHHHHhcCC-HHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111221111 1235677777766666666555554 5788899999888888888887776665553
No 175
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=98.81 E-value=7.7e-07 Score=82.49 Aligned_cols=144 Identities=10% Similarity=0.075 Sum_probs=93.8
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
.+..+..+........++++|++|.|.+..+.|.+.++..+...+..++.|++.||+|+|+. +..+.+..++++.....
T Consensus 211 ~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-l~~~~~~~~~~~~~~~~ 289 (382)
T PRK11128 211 LLCVSLLQGSHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDL-LLLSAICGVVRWGLMGS 289 (382)
T ss_pred HHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHHHHHHh
Confidence 33334444445556678889998889999999999999999999999999999999999988 56677776666543321
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRN-AFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~~~g~~~~~~~~~~l~~ 188 (318)
.+ +.+... +..++.+++++...+....+..+. + ++++++..+..+ ....+|..+++.+++.+.+
T Consensus 290 -------~~--~~~~~~----~~~~l~g~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~ 354 (382)
T PRK11128 290 -------TT--ALPWLI----VIQILHCGTFTVCHLAAMRYIAAR-P-GSEVIRLQALYSALAMGGSIAIMTVLSGFLYQ 354 (382)
T ss_pred -------hh--hHHHHH----HHHHHHHHHHHHHHHHHHHHHHHC-C-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 222211 222456666666655555555553 2 345566666654 3345565666666666654
Q ss_pred h
Q 021040 189 V 189 (318)
Q Consensus 189 ~ 189 (318)
.
T Consensus 355 ~ 355 (382)
T PRK11128 355 H 355 (382)
T ss_pred h
Confidence 3
No 176
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=98.81 E-value=1e-07 Score=89.38 Aligned_cols=159 Identities=10% Similarity=-0.005 Sum_probs=93.9
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
.+..+..........+++|.|+++. |.+..+.+.......+...++.++.|+++||+||||..+....+...+++.+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~ 327 (412)
T TIGR02332 248 TLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLA 327 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHH
Confidence 3333334444556678999999885 67889999999999999999999999999999988764433333333333221
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
. . ..+ ........ .+..++.............|.. ++++|+.+.++.+...++|+++++.+.+.+.
T Consensus 328 ~----~---~~~--~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~ 393 (412)
T TIGR02332 328 S----A---TDH--NLIQLLGI----IMASMGSFSAMAIFWTTPDQSI-SLQARAIAIAVINATGNIGSALSPFLIGILK 393 (412)
T ss_pred H----h---cCC--HHHHHHHH----HHHHHHhhhhhhHHHhhccccc-chHHHHHHHHHHHHhhhhhhhhhhhhccccc
Confidence 1 0 111 11111111 1112222221222222333444 4578999999999988888877765554444
Q ss_pred HhhccCcccchhHHHHHHHHHHHH
Q 021040 188 SVSTAKTHADLENQYRWIAYSSIF 211 (318)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~i~~~ 211 (318)
+.. .+|++.+.+.++
T Consensus 394 ~~~---------g~~~~~~~~~~~ 408 (412)
T TIGR02332 394 DAT---------GSFNSGLWFVAA 408 (412)
T ss_pred ccC---------CCCchhHHHHHH
Confidence 321 246666655443
No 177
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.1e-07 Score=85.42 Aligned_cols=256 Identities=11% Similarity=0.049 Sum_probs=149.6
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh-----hccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 46 YLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 46 ~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-----r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
-+|..++.-|.|-++.+....++.-. -...++..+.| |+||||.|+.-+..+.+..++.+-. +++.+...+.
T Consensus 52 ~iP~lL~ak~vSyt~~a~fS~ay~P~--sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~-~v~~~~g~ng 128 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQAIFSFAYWPF--SLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY-LVDRGLGGNG 128 (510)
T ss_pred hhHHHhcCCCcchhhhhhhhhhhhHH--HHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh-CCCcccccCC
Confidence 34555554477777766654443322 34567888888 9999999987776665555544422 3444443121
Q ss_pred -chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCc
Q 021040 121 -TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS-----VSTAKT 194 (318)
Q Consensus 121 -~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~-----~~~~~~ 194 (318)
.+...+.+..+ .+..+..+..+++...+.-.+.. +++-+-++..+..+.+.|.+++..+.-.+-. .+..+-
T Consensus 129 ~~p~v~~lt~~f--~LLnflaAtQDIAVDgwALtmLs-~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~ 205 (510)
T KOG3574|consen 129 GLPNVVALTLLF--LLLNFLAATQDIAVDGWALTMLS-RENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSI 205 (510)
T ss_pred CCcchHHHHHHH--HHHHHHHhhhhhhhhHHHHHhcC-HhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcC
Confidence 12112222221 34667777788888877666553 4667777777777777777766543211110 001111
Q ss_pred ccc----hhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHH---HHHHhcHHHHHHHHHHHHHHHHHH
Q 021040 195 HAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISW---AYWFKKILYYQVALVYMLTRLVVN 267 (318)
Q Consensus 195 ~~~----~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 267 (318)
+.| ...+|-|. -+.+.++...+..+.-+|++++..+|.+.+..+.+ ++++|-|+.+.++......-+++.
T Consensus 206 P~~~g~ItL~gy~~f---wg~~~~vat~Lv~~~kke~~~~~~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~ 282 (510)
T KOG3574|consen 206 PLDQGFITLAGYLWF---WGALFIVATTLVALLKKENDESVDEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQ 282 (510)
T ss_pred cCccceEEhhHHHHH---HHHHHHHHHHHHHHhcCCCchhhhhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhh
Confidence 111 01223222 23333344444445555654443333444555544 577788999999998899999999
Q ss_pred HHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 268 VSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISL 311 (318)
Q Consensus 268 ~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~ 311 (318)
......+.-+.|. |+++...+..........++.+...+|++.
T Consensus 283 a~da~t~LkLle~-Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta 325 (510)
T KOG3574|consen 283 AADALTSLKLLEH-GVPKEELALIAVPLVPLQIALPLYIGKWTA 325 (510)
T ss_pred hhhhccchHHHHc-CCChhHheeeeeehhhHHHhhhhhheeecC
Confidence 8888888888874 888776665555555666777777777665
No 178
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.80 E-value=2.4e-07 Score=80.31 Aligned_cols=129 Identities=13% Similarity=0.150 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
+.+.-+.++++- |+|+...+.+.+.--...++.+|+.|.++||+||+..|+..+.+...++=..+++ . .-+
T Consensus 283 Fi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~F-------t-~ls 354 (459)
T KOG4686|consen 283 FITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFF-------T-FLS 354 (459)
T ss_pred HhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHh-------h-hcc
Confidence 334456777775 9999999999999888999999999999999999988876666665555333332 0 011
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
++ +.. .+.|..++...-.+...++.+.| +++-+++.+..+...|+|-.+.+++.+.+.
T Consensus 355 Py---~~m----~~lGLsysllAcslWP~va~~vp-E~qLGTaygf~qsIqNLgla~i~Iiag~i~ 412 (459)
T KOG4686|consen 355 PY---TSM----TFLGLSYSLLACSLWPCVASLVP-EEQLGTAYGFIQSIQNLGLAFIPIIAGFIA 412 (459)
T ss_pred HH---HHH----HHHhhhHHHHHHHHhhhhhhhCC-HHHhcchHHHHHHHHhhhhhHHhhhhheee
Confidence 22 111 23566676666566777777775 578899999999999999877666655544
No 179
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.79 E-value=1.2e-06 Score=83.57 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=119.3
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--hHHHHHHHHHH-
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIWHGAGSVLV- 100 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr--~~~l~~g~~~~- 100 (318)
....|.++.+...-..+.+..+...|.++. |++..+...+..+..+..+++..++|++.||+|.| +. +..+.+..
T Consensus 282 ~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~-l~~~l~~~~ 360 (477)
T PF11700_consen 282 QLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRT-LLISLILWI 360 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHH-HHHHHHHHH
Confidence 344555555444444444556677888875 99999999999999999999999999999999988 66 44454443
Q ss_pred HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY 180 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~ 180 (318)
.+....++. -.+.... ..+.+. + .+..++.|++.+..+....++.+++.|+ ++.+...++.....-....+|+
T Consensus 361 ~i~~~g~~G-~~~~~~g-~~~~~~-f---~~~a~~~G~~~G~~qs~sRs~~~~LiP~-g~e~efFgly~i~gk~ss~lGP 433 (477)
T PF11700_consen 361 IIPLYGLFG-FWPSFFG-LKSPWE-F---WVLAVLIGLFMGGIQSASRSLFSRLIPP-GREAEFFGLYAITGKASSWLGP 433 (477)
T ss_pred HHHHHHHHH-hhhcccC-cccHHH-H---HHHHHHHHHHhhhHHHHHHHHHHHhCCC-chhhHHHHHHHHHHHHHHHHHH
Confidence 223222220 0010001 112232 1 2223467788888888889999999975 5568889998888888888887
Q ss_pred HHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 181 AIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 181 ~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
.+.+.+....+ +.|+.+....++.+ ..++.+..+++++.
T Consensus 434 ll~g~i~~~tg---------~~r~g~~~l~~lf~-~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 434 LLFGLITDATG---------SQRYGFLFLLVLFL-IGLILLFFVDVEKG 472 (477)
T ss_pred HHHHHHHHHhC---------CchhHHHHHHHHHH-HHHHHHhhccchhh
Confidence 77666654422 34555544443333 33444466766543
No 180
>PF12832 MFS_1_like: MFS_1 like family
Probab=98.79 E-value=3.7e-08 Score=69.41 Aligned_cols=56 Identities=27% Similarity=0.447 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040 39 TAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (318)
Q Consensus 39 ~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~ 94 (318)
......+|++.|+++.|+|+.++|++.++..+...+++|++|.++||+||+|..+.
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~ 70 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILL 70 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHH
Confidence 34567799999999999999999999999999999999999999999999998544
No 181
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.77 E-value=3.9e-07 Score=85.86 Aligned_cols=149 Identities=19% Similarity=0.185 Sum_probs=105.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
...+...+...+.+++.+.|.++. |.+ .+.+.+..+..+...+..|++++++||+||||.+ ..+..+.+++...++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVLGNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVY-IIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHhcCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeeh-hhhHHHHHHHHHHHHH
Confidence 334555566666777777777876 666 6778888889999999999999999999999985 5677777777665542
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc------chhHHHHHHHHHHHHHHHHHHHHH
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
. +..+.+.. .+..++.+++.+.......++.+|..+..| +.+...+..+....++..++..+.
T Consensus 310 --~-----~~~~~~~~----~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~ 378 (428)
T PF13347_consen 310 --L-----GPGSPWLV----LILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIV 378 (428)
T ss_pred --H-----HhhhHHHH----HHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 1 11122222 222345778888877777888999875322 236677888888888888888877
Q ss_pred HHHHHhhcc
Q 021040 184 FIVFSVSTA 192 (318)
Q Consensus 184 ~~l~~~~~~ 192 (318)
+.++...+.
T Consensus 379 g~~l~~~Gy 387 (428)
T PF13347_consen 379 GLLLALVGY 387 (428)
T ss_pred HHHHHHhCc
Confidence 777765443
No 182
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.77 E-value=2.9e-07 Score=86.86 Aligned_cols=60 Identities=12% Similarity=0.190 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHH
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSF 104 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~ 104 (318)
...++|.|+++. .+.........+..+...+..|++|+++||+|+||. +.++.+..+++.
T Consensus 271 ~s~~lp~~~~~~-~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~v-l~~~~i~~~i~~ 330 (462)
T PRK15034 271 FSAGFAMLAKTQ-FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRV-TLINFIFMAIFS 330 (462)
T ss_pred HHHHHHHHHHHH-cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHH-HHHHHHHHHHHH
Confidence 444677777663 444444444556778899999999999999999988 455665555554
No 183
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.77 E-value=4.2e-07 Score=95.81 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHHHh-CCChh-HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 40 AACWFTYLLLFLTDI-GLSPR-GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~-~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
......+++.|+.+. |.+.. +.|++.+...++..+++++.|+++||+++|+. +.++.++.+++...+.. .
T Consensus 248 ~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~~~~~-------~ 319 (1146)
T PRK08633 248 SQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL-VPLGALGLALSLFLLPT-------A 319 (1146)
T ss_pred HHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc-hhHHHHHHHHHHHHHHH-------h
Confidence 344556778888875 99999 99999999999999999999999999998887 45566665555443321 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (318)
. +..... +..++.+++.+...++..+++.+..+ +++|+++.+..+....+|.+++..+++
T Consensus 320 ~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 320 P--SLASVL----VLFFLFGFSAGLFIVPLNALIQFRAP-EKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred h--hHHHHH----HHHHHHHHHHHHhhHHHHHHHhhcCC-ccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 1 122111 11234566667666677778777765 578999999988888888766655543
No 184
>TIGR00895 2A0115 benzoate transport.
Probab=98.75 E-value=3.7e-07 Score=84.15 Aligned_cols=132 Identities=16% Similarity=0.015 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 38 ITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
........++|.+.++.|.+..+.+....+..+...++.++.|+++||+|||+. +. +.....+....++. ..
T Consensus 264 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-~~~~~~~~~~~~~~------~~ 335 (398)
T TIGR00895 264 VGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGWLADRLGPRVT-AL-LLLLGAVFAVLVGS------TL 335 (398)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHH-HH-HHHHHHHHHHHHHH------Hh
Confidence 344445566675555569999999999999999999999999999999998843 33 33333333222220 01
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAF 184 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~ 184 (318)
. +..... +..++.+++.+...+...++..|..+ +++|++..++.+....+|..+++.+.+
T Consensus 336 ~--~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~g~~~~G 395 (398)
T TIGR00895 336 F--SPTLLL----LLGAIAGFFVNGGQSGLYALMALFYP-TAIRATGVGWAIGIGRLGAIIGPILAG 395 (398)
T ss_pred h--CHHHHH----HHHHHHHHHHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 1 112111 11234666777667777788888875 578999999888888888776655443
No 185
>PRK10054 putative transporter; Provisional
Probab=98.68 E-value=1.1e-06 Score=82.00 Aligned_cols=175 Identities=9% Similarity=0.063 Sum_probs=102.5
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 29 YGSGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~l~~~---gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
+.+..+...........+++.|+.+. +.+...++.++....+.....+++.|.+.||+|+|+. +..+.++.+++..
T Consensus 211 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-l~~~~~~~~~~~~ 289 (395)
T PRK10054 211 FTCSGFLASFVSGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPL-MTAGTLCFVIGLV 289 (395)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhH-HHHHHHHHHHHHH
Confidence 33333433344444444566666542 6677888989988888888889999999999999887 5566666666554
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
.... .. ++.+... +...+.+++.....+...+.+.+..| ++.|++..+..+ ...+|..+++.+++.
T Consensus 290 ~~~~-------~~-~~~~~~~----~~~~~~~~g~~~~~p~~~~~~~~~~p-~~~~~~~~~~~~-~~~~G~~~Gp~~~G~ 355 (395)
T PRK10054 290 GFIF-------SG-NSLLLWG----MSAAVFTVGEIIYAPGEYMLIDHIAP-PGMKASYFSAQS-LGWLGAAINPLVSGV 355 (395)
T ss_pred HHHH-------cc-hHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHhCC-cccceehHhHHH-HHHHHHHHHHHHHHH
Confidence 3321 11 1122111 11234566665555555667777765 467777766544 455677777777767
Q ss_pred HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
+.+.. ++...+++.+....+..++.....+|++
T Consensus 356 l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (395)
T PRK10054 356 ILTTL----------PPWSLFVILALAIVAAWLLMLKGMRARP 388 (395)
T ss_pred HHHHc----------ChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence 66543 3444555544444444444444444543
No 186
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=98.67 E-value=6e-07 Score=84.83 Aligned_cols=197 Identities=13% Similarity=0.032 Sum_probs=110.5
Q ss_pred HHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHh
Q 021040 67 SGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVA 146 (318)
Q Consensus 67 ~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (318)
...+...+.+|..|.++||||||.+ +........+.-..+- . .. ++.++ + .-...++++....
T Consensus 70 ~~~~~~~i~s~~iG~lSD~~grk~~-L~~~~~~~~l~~~~~~--------~--~~-~~~~~---~--~~l~g~~~~~~s~ 132 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDRYGRKVV-LLLPLFGTILPALCLL--------F--QG-YWFFL---L--LGLSGGFSAIFSV 132 (463)
T ss_pred hhHHHHHHHHhhhHHhhhhhhhhhh-HHHHHHHHHHhHHHHH--------H--HH-HHHhh---h--cccccchhhhhhh
Confidence 3467788999999999999999987 4444444333321110 0 01 11111 0 1122344445556
Q ss_pred HhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (318)
Q Consensus 147 ~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e 226 (318)
..++++|.+. .++|....++.+.....+..+++.+++-+... .++-..+.+.++..++..+.....+||
T Consensus 133 ~~a~vadis~-~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~----------~~~a~~f~ia~~~~~~~~~y~~~~l~E 201 (463)
T KOG2816|consen 133 GFAYVADISS-EEERSSSIGLLSGTFGAGLVIGPALGGYLVKF----------LGIALVFLIAAASGILSLLYMLLFLPE 201 (463)
T ss_pred hhhheeeccc-hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------cCchHHHHHHHHHHHHHHHHHhhcccc
Confidence 6788999986 46888888877765555555555444333322 234456667776777776677778898
Q ss_pred cccccccC---------C---CCchHHHHHHHH---hcHHHHHHHHHHHHHHHHHHHHHH-HhHHhhhhccccccchhhH
Q 021040 227 PRLKMGLR---------G---NSHARISWAYWF---KKILYYQVALVYMLTRLVVNVSQA-YLAFYVINDLRMGQSAKAL 290 (318)
Q Consensus 227 ~~~~~~~~---------~---~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~yl~~~~g~~~~~~~~ 290 (318)
+..++++. . .....+.++... ++|..+.++...++.......-.. ..+.|+....+.++...+.
T Consensus 202 sl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~ 281 (463)
T KOG2816|consen 202 SLQEKERSDATLRELTPGSLDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSD 281 (463)
T ss_pred ccCccccccccccccCCCcccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHH
Confidence 75443221 0 111222233322 345555555555555444332222 4478888888988765553
Q ss_pred H
Q 021040 291 V 291 (318)
Q Consensus 291 ~ 291 (318)
+
T Consensus 282 ~ 282 (463)
T KOG2816|consen 282 L 282 (463)
T ss_pred H
Confidence 3
No 187
>TIGR00898 2A0119 cation transport protein.
Probab=98.67 E-value=2.4e-06 Score=82.13 Aligned_cols=149 Identities=11% Similarity=-0.024 Sum_probs=87.1
Q ss_pred HHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHH
Q 021040 52 TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCV 131 (318)
Q Consensus 52 ~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (318)
.+.+.+.... ..+..+...++.++.+.++||+|||+. +.++.++.+++.+.+.. .+ +..........
T Consensus 351 ~~~~~~~~~~---~~~~~~~~i~~~~~~~~l~dr~grr~~-~~~~~~~~~~~~l~~~~--~~-----~~~~~~~~~~~-- 417 (505)
T TIGR00898 351 GNLGGNIYLD---LFISGLVELPAKLITLLLIDRLGRRYT-MAASLLLAGVALLLLLF--VP-----VDLYFLRTALA-- 417 (505)
T ss_pred cccCCChHHH---HHHHHHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHHH--cC-----CCchHHHHHHH--
Confidence 3345554333 334456677888899999999999988 55666666666554431 11 11112111111
Q ss_pred HHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHH
Q 021040 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 211 (318)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (318)
.+.+++.+........+.+|..| ++.|+++.++.+....+|.++++.+.+ +. ..++...+.+.++
T Consensus 418 --~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~-----------~~~~~~~~~~~~~ 482 (505)
T TIGR00898 418 --VLGKFGITSAFQMVYLYTAELYP-TVVRNLGVGVCSTMARVGSIISPFLVY-LG-----------EKWLFLPLVLFGG 482 (505)
T ss_pred --HHHHHHHHHHHHHHHHHhccccc-HHHHhhhHhHHHHHHHHHHHHHhHHHH-HH-----------HHHHhhHHHHHHH
Confidence 22333333334445567788876 468999999888888888777665543 21 1234455666666
Q ss_pred HHHHHHHHHHhccccccc
Q 021040 212 IGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 212 ~~~l~~~~~~~~~~e~~~ 229 (318)
.+++..+.. +++||++.
T Consensus 483 ~~~~~~~~~-~~lpet~~ 499 (505)
T TIGR00898 483 LALLAGILT-LFLPETKG 499 (505)
T ss_pred HHHHHHHHH-HcCcCCCC
Confidence 665555444 45688654
No 188
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=98.66 E-value=1.3e-06 Score=81.24 Aligned_cols=167 Identities=11% Similarity=-0.042 Sum_probs=96.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~ 106 (318)
+..+.............+.|+++. +.+..+.|.+.++..+...+..+..|++.||+||||. +.++.++.++.+..
T Consensus 222 l~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~-l~~~~~l~~l~~~~ 300 (396)
T TIGR00882 222 LYVVGVACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNA-LLIAGTIMSVRIIG 300 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHH
Confidence 333333333334444567777764 4566788999999999999999999999999999987 45666666665543
Q ss_pred HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHH
Q 021040 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~ 185 (318)
... .+ +.+...+. .++.+++.............+..+ ++.|+...+. .+....+|..+++.+.+.
T Consensus 301 ~~~-------~~--~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~-~~~~at~~~~~~~~~~~lg~~~~~~l~G~ 366 (396)
T TIGR00882 301 SSF-------AT--TALEVVIL----KMLHAFEVPFLLVGCFKYITSQFD-VRLSATIYLIGFQFAKQLAMIFLSTLAGN 366 (396)
T ss_pred HHh-------cC--ChHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCC-cceEEEeehHHHHHHHHHHHHHHHHhHHH
Confidence 221 11 12222211 233445444333222233333332 2334443433 445667777777666666
Q ss_pred HHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 186 VFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
+.+. .+|+..+.+.+++..+..++..+
T Consensus 367 l~~~----------~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 367 MYDS----------IGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred HHHh----------cccHHHHHHHHHHHHHHHHHHHH
Confidence 6542 35777777777766666655543
No 189
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=98.65 E-value=2.2e-06 Score=78.95 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
....+.|.++++. |.++.+.|.+.....+...++.++.|+++||+|||+. +..+.....++...+.. .. ... .
T Consensus 224 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~-~ 297 (385)
T TIGR00710 224 AFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSL-LRMGLILFAVSAVLLEI--TA--ILG-L 297 (385)
T ss_pred HHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHHH--HH--Hhc-c
Confidence 3445667777765 9999999999999999999999999999999999887 45565555555433321 00 000 0
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV 174 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~ 174 (318)
...... .....+.+++.+...........|.. +++|+++.+..+.....
T Consensus 298 ~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~ 346 (385)
T TIGR00710 298 GSWAMI---IGPMMFVGIGNSMISSIAMAYALEDF--PHVAGTASALFGTLRLV 346 (385)
T ss_pred chHHHH---HHHHHHHHHHHHHHHHHHHHHHhccC--cccchHHHHHHHHHHHH
Confidence 111111 11113355555555444445555543 35788888876655443
No 190
>PRK09669 putative symporter YagG; Provisional
Probab=98.65 E-value=2e-06 Score=81.45 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=79.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHH
Q 021040 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFN 137 (318)
Q Consensus 58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 137 (318)
+...+.+.....+...+..+++++++||+|||+.+ ..+.+..++....++. .+ .++.+.. .+..++.+
T Consensus 263 ~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~-~~~~~~~~~~~~~~~~--~~-----~~~~~~~----~~~~~i~g 330 (444)
T PRK09669 263 PDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAF-KWTIVAFVILSALIFF--IP-----PSNVWLI----FALNILFN 330 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHH-HHHHHHHHHHHHHHHH--hC-----cchHHHH----HHHHHHHH
Confidence 34445566667778888899999999999999985 4555544443332221 11 1122211 12223567
Q ss_pred HHHhhhHHhHhhhccccccCcc------chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040 138 VGWAATQVAHMSMVNCITLNST------SRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (318)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~------~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (318)
++.+...+...++++|..+..| +.+...+..+....+|..+++.+++.+++..+.
T Consensus 331 ~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 331 FIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7777777777888888764211 124566778888889999988888888776554
No 191
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.65 E-value=6.2e-06 Score=76.96 Aligned_cols=154 Identities=16% Similarity=0.067 Sum_probs=80.8
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHH-HHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 45 TYLLLFLTDI-GLSPRGAAAVMLSG-QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 45 ~~l~~~l~~~-gls~~~~g~i~~~~-~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
.+.++++.+. |+++.++|++.... .+...++.++.|+++||+||||. +..+.+..++.....+. .. ..++ +.
T Consensus 230 ~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~-l~~~~~~~~l~~l~~~~--~~--~~~~-~~ 303 (402)
T PRK11902 230 SLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRS-LMLFGVLQAVSNLGYWV--LA--VTPK-HL 303 (402)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHH--HH--hcCC-cH
Confidence 3445666664 99999999998654 45678899999999999999887 44444444443222210 00 1111 12
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (318)
+.......+..+..+++.+........++.+..+ .+++ +..+....++...++.+++.+.+. .+|
T Consensus 304 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~l~~~~~~~~~G~l~~~----------~G~ 368 (402)
T PRK11902 304 WTMALAIGIENLCGGMGTAAFVALLMALCNRSFS-ATQY----ALLSALASVGRVYVGPTSGYLVEA----------YGW 368 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHH----HHHHHHHHHHHHHHHHHHHHHHHH----------hCh
Confidence 2112111111122334444444444445544432 2233 333334445555444444455432 467
Q ss_pred HHHHHHHHHHHHHHHHH
Q 021040 203 RWIAYSSIFIGCCFVGI 219 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~ 219 (318)
++.+.+.++++++..++
T Consensus 369 ~~~f~~~~~~~~~~~~~ 385 (402)
T PRK11902 369 PGFYLMTVVIALPGLAL 385 (402)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666666554443
No 192
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=98.64 E-value=4.6e-07 Score=87.21 Aligned_cols=175 Identities=12% Similarity=-0.046 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHhCCChhHHHH------------HHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCC
Q 021040 43 WFTYLLLFLTDIGLSPRGAAA------------VMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGG 110 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~------------i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~ 110 (318)
...+.|.++++.|.+....+. ...+..+...++.++.++++||+|||+.. ..+.++.+++...+..
T Consensus 307 ~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l-~~~~~~~~~~~~~l~~- 384 (502)
T TIGR00887 307 VNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ-LMGFFILTVLFFVLGF- 384 (502)
T ss_pred cccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH-HHHHHHHHHHHHHHHH-
Confidence 334566777777776432211 12233445556778899999999999874 4565555554432210
Q ss_pred CCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 111 CMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
. ......... ...+.+ .....+.+. ......+.+|+.| .+.|++..++.+....+|+++++.+.+.+.+.-
T Consensus 385 --~--~~~~~~~~~-~~~~~~--~~~~~~~~~-~~~~~~~~~E~~p-~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~ 455 (502)
T TIGR00887 385 --A--YNHLSTHGF-LAIYVL--AQFFANFGP-NATTFIVPGEVFP-TRYRSTAHGISAASGKAGAIIGQFGFLYLAQHG 455 (502)
T ss_pred --H--HHhcchhHH-HHHHHH--HHHHHhcCC-CchhhhhhhccCc-hhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccc
Confidence 0 000000111 111111 111111111 1122345578876 578999999999888888887766654444311
Q ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 191 TAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 191 ~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
+.....+...++...+++.+++.++..+. .+++||++.
T Consensus 456 ~~~~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~ 493 (502)
T TIGR00887 456 DPTKGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKG 493 (502)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHH-heEeccCCC
Confidence 00000000012333456666665555443 467788754
No 193
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.63 E-value=3e-06 Score=76.13 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
+..++....++|.++.|.|+|+.+.|..++...+.........-.+++|...+|++.......+.++.+.+.+ .|
T Consensus 221 S~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~--~P--- 295 (395)
T COG2807 221 SLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL--AP--- 295 (395)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH--hh---
Confidence 3456677789999999999999999999999999999999999999998877777666666666666554421 22
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (318)
.+.. +.+ .++.|+|.+...+-...++.+-++++++-++..++.+...++=... ++.+++.+.
T Consensus 296 --~~~~----~lw---~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~----GP~l~G~lh----- 357 (395)
T COG2807 296 --GQLP----ILW---ALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAF----GPWLFGFLH----- 357 (395)
T ss_pred --hhHH----HHH---HHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhh----hhhhHhHHH-----
Confidence 2111 112 1346666666555556677777777777777777766544433333 334444433
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 021040 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEE 226 (318)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e 226 (318)
|...+|+......+...++..+..+..-|+
T Consensus 358 Da~gsw~~~~~~l~~~~i~m~i~Gl~a~r~ 387 (395)
T COG2807 358 DATGSWSAPLVLLALATLLMLIFGLRAGRN 387 (395)
T ss_pred HhcCChHHHHHHHHHHHHHHHHHHhhcchh
Confidence 223467766655555555555555554443
No 194
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=98.63 E-value=6.6e-06 Score=76.69 Aligned_cols=152 Identities=19% Similarity=0.053 Sum_probs=90.2
Q ss_pred HHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 43 WFTYLLLFL-TDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 43 ~~~~l~~~l-~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
...++++++ ++.|++..+.|.+.....+...++.++.|++.||.+| +..+. +..+..+....+.. . . + +
T Consensus 235 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~-~~~~~~~~~~~l~~--~----~-~-~ 304 (394)
T PRK10213 235 FFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAG-APLVLAVSALVLTL--W----G-S-D 304 (394)
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHH-HHHHHHHHHHHHHH--H----h-h-h
Confidence 445664444 4459999999999999999999999999999999644 44233 33332222222210 0 1 1 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
.+.... ..++.+++.+...+...+++.+..+ +++++..+.......+|..+|+.+++.+.+. .+
T Consensus 305 ~~~~~~----~~~l~G~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~----------~g 368 (394)
T PRK10213 305 KIVATG----VAIIWGLTFALVPVGWSTWITRSLA--DQAEKAGSIQVAVIQLANTCGAAIGGYALDN----------IG 368 (394)
T ss_pred HHHHHH----HHHHHHHHHHhhhHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------cC
Confidence 221111 1235667777777666666666554 3455666666667777888877777776643 23
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 021040 202 YRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~ 220 (318)
++..+...+++..+..+.+
T Consensus 369 ~~~~~~~~~~~~~~~~~~~ 387 (394)
T PRK10213 369 LTSPLMLSGTLMLLTALLV 387 (394)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 4445445444444444444
No 195
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=98.61 E-value=3.2e-06 Score=78.77 Aligned_cols=126 Identities=10% Similarity=-0.004 Sum_probs=84.7
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (318)
Q Consensus 45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 123 (318)
..++.|+++. |.++.+.|.+.....+...+++++.+++.||+++|+. +..+. ..++....+. +. .+.+
T Consensus 226 ~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~-~~~g~-~~~~~~~~~~-------~~--~~~~ 294 (393)
T PRK11195 226 FLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRV-LPAGI-LMGLVVLLMA-------LQ--HSLL 294 (393)
T ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch-HHHHH-HHHHHHHHHH-------HH--hHHH
Confidence 4456677775 9999999999999999999999999999999998876 44554 3333222111 01 1122
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccc-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS-RVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
... +...+.+++.+...++..+...+..+ ++. ++++.+..+...+++..++..+.+.+
T Consensus 295 ~~~----~~~~~~G~~~g~~~~~~~~~~q~~~~-~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~ 353 (393)
T PRK11195 295 PAY----PLLILIGALGGFFVVPMNALLQHRGH-VLVGAGHSIAVQNFNENLAMLLMLGLYSLL 353 (393)
T ss_pred HHH----HHHHHHHHhhhhhhhhHHHHHHhhCc-ccccchhHHHHHhHHHHHHHHHHHHHHHHH
Confidence 111 11234566667667777777776543 333 68898898888888888877665533
No 196
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.61 E-value=3.7e-06 Score=77.72 Aligned_cols=164 Identities=12% Similarity=-0.026 Sum_probs=90.4
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc---CchHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG---HFKIWHGAGSVLVAVS 103 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G---rr~~~l~~g~~~~~i~ 103 (318)
+...+..+...........++|.|+++.|.+.. .+....+..+...++. ++++||.. ||+..+....+..++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~---~~~~d~~~r~~~r~~~~~~~~~~~a~~ 270 (368)
T TIGR00903 195 WIIGAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGV---AVIPDRVARAGLRSIYIRAAALLIAAF 270 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHH---HHhhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 334444445555556667899999988788765 5666666666555554 66777654 4444333233333333
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
...+. ... +........ .+.+++.........++.+|..| ++.|+++.++.+..+.+|+..++.+.
T Consensus 271 ~~~~~-------~~~--~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~p-~~~rgt~~G~~~~~g~~~~~~~~~~~ 336 (368)
T TIGR00903 271 FLALA-------FEL--NRLALFAFI----GIAGLLMLPAYAIIMDWIGKFCD-KELHGKAAGAIGFTSRAISVALALAA 336 (368)
T ss_pred HHHHH-------Hcc--ccHHHHHHH----HHHHHhhhhhHHHHHHHHHHhcc-hhhcCcccchhhHHHHHHHHHHHHHH
Confidence 22111 111 111111111 22333333333345677888886 57899999999998888887766554
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
+.++. +.+..+.+.++..++.++..
T Consensus 337 ~~~~~------------~~~~~f~~~~~~~~i~~~~~ 361 (368)
T TIGR00903 337 MLFIS------------SAEAYFTFLAILITIAFAIA 361 (368)
T ss_pred HHHhc------------CHHHHHHHHHHHHHHHHHHH
Confidence 44331 23444555555555555444
No 197
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.59 E-value=4.3e-05 Score=75.52 Aligned_cols=170 Identities=14% Similarity=0.061 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-hccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
+...+..|+++. |.+.+.+..+...+....-+...++|.++| ++||+|. +.++.++..++..++..+..| +..
T Consensus 6 m~aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~t-Il~~~ii~~lG~~llai~a~~----~~~ 80 (654)
T TIGR00926 6 MRTILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKT-ILYLSIVYVVGHALLSFGAIP----SSG 80 (654)
T ss_pred cHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHhccCc----ccc
Confidence 345567777764 999999999999998888999999999999 5899998 567777777776655321111 000
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
........+.. ..+..+|.+..-+...+...|..++. ++|.+...+.+.+.++|++++..+...+-...+.. + .
T Consensus 81 ~~~~~~~~l~g-LaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~f--g-~ 156 (654)
T TIGR00926 81 HPLHDLLDLLG-LALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCF--G-C 156 (654)
T ss_pred cchHHHHHHHH-HHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--c-c
Confidence 01111111111 13455677777777788888876532 23567777888888888777655543332221100 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 021040 199 ENQYRWIAYSSIFIGCCFVGIFL 221 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~~~~ 221 (318)
..+|.+.+.+.+++.++..++..
T Consensus 157 ~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 157 QDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred CcchHHHHHHHHHHHHHHHHHHH
Confidence 13577777777666665554443
No 198
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.59 E-value=2.1e-06 Score=90.63 Aligned_cols=150 Identities=10% Similarity=-0.029 Sum_probs=98.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
++.+..........+++|.|+++. |.+..+.|++++...++..+++++.|+++||.++++. +..+.++.+++...+..
T Consensus 232 ~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~-~~~~~~~~~~~~~~l~~ 310 (1140)
T PRK06814 232 LGISWFWLVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLY-VPIGALLMGLFGLDLAF 310 (1140)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeee-ehHHHHHHHHHHHHHHh
Confidence 333333344455667889999886 9999999999999999999999999999998877665 33444444433322211
Q ss_pred CCCCCc------------ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040 110 GCMPCR------------ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (318)
Q Consensus 110 ~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (318)
..... +....+.+.. .+..++.+++.+...++..+++.+.++ +++|+++.+..+....+|..
T Consensus 311 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~~~~p-~~~~G~v~g~~~~~~~~~~~ 384 (1140)
T PRK06814 311 -ASSSVPAEPAQLKSILVFLSKRHGWRI----LIDLFGLAAAGGLYIVPLFAALQAWAN-PAHRARVIAANNVLNAAFMV 384 (1140)
T ss_pred -cccccccccccccchhhhhcccccHHH----HHHHHHHHHHHHHhHHHHHHHHHhhCC-cccceeeeHHHHHHHHHHHH
Confidence 00000 0000111211 122234667777777788888888876 57899999999988888888
Q ss_pred HHHHHHHHHH
Q 021040 178 SLYAIAFIVF 187 (318)
Q Consensus 178 ~~~~~~~~l~ 187 (318)
+++.+.+.+.
T Consensus 385 ig~~~~g~l~ 394 (1140)
T PRK06814 385 AGTIILALLQ 394 (1140)
T ss_pred HHHHHHHHHH
Confidence 7776655544
No 199
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=98.58 E-value=9.1e-06 Score=78.35 Aligned_cols=132 Identities=12% Similarity=0.082 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 43 WFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 43 ~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
....+|.+.++. |.++...|++++...++..++..+.+.+.+|+++++. +..+.+..+++...+. +.+ +
T Consensus 237 ~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~l-v~~~~~~~a~~~~~la-------l~~--~ 306 (524)
T PF05977_consen 237 VWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRL-VLLASLLFALALLLLA-------LSP--S 306 (524)
T ss_pred HHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchh-hHHHHHHHHHHHHHHh-------cch--H
Confidence 345567777775 9999999999999999999999999999999998887 5567777666654332 111 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+...+ ..++.|+++.......++.+...+| ++.|+++.+..+.....+..+|..+.+.+.+.
T Consensus 307 ~~~~~~----~l~l~G~~~~~~~~~~~t~~Q~~~P-~~~~GRv~si~~~~~~g~~~lGsll~G~la~~ 369 (524)
T PF05977_consen 307 FWLALI----ALFLAGAAWIIANSSLNTLVQLSVP-DWVRGRVFSIYQMVFFGGMPLGSLLWGFLADH 369 (524)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 1235677777777777777777665 57899999998888888888887777766654
No 200
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.58 E-value=1.5e-06 Score=79.47 Aligned_cols=130 Identities=12% Similarity=0.084 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH-HHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQ-IADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~-i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+..........+++++|+++.|.++.++|.+..+.. +...++.++.|+++||+||||. +..+.++.+++......
T Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~-- 294 (356)
T TIGR00901 218 IVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYA-LLLFGIVQALTNAGFVW-- 294 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHH--
Confidence 3334455556667889999888999999998887655 5677999999999999999888 45566665555442211
Q ss_pred CCCcccCc------cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH
Q 021040 112 MPCRILST------STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT 172 (318)
Q Consensus 112 ~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~ 172 (318)
.+. ... .+.+. .....++.+++.+...+...++..+.+| +++|++..+..+...
T Consensus 295 ~~~--~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~ 354 (356)
T TIGR00901 295 LAS--NGHHDGITFPHLLM----LFLTITLEAVTGGLGTVAFVAFLSKLSN-PKFGATQMALLSSLS 354 (356)
T ss_pred HHh--cCcccccccchHHH----HHHHHHHHHHHhHHHHHHHHHHHHHhcC-CCccHHHHHHHHHHH
Confidence 100 000 11111 1111234567777778888889999886 589999888776543
No 201
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=98.57 E-value=9.5e-07 Score=80.07 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=91.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-CCC-hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDI-GLS-PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~-gls-~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
+...........+++.|+.+. |.+ ..+.+.+..+..+...+..++.|+++||+|+|+.. ........+....+..
T Consensus 216 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~-- 292 (352)
T PF07690_consen 216 FLFFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRL-LIAILLLILGALGLLL-- 292 (352)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH-HHHHHHHHHHHHHHCC--
T ss_pred hHHHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHH--
Confidence 333345555667888886664 999 89999999999999999999999999999987774 4444444444433321
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (318)
.+ ...+..+... ...+.+++.+...+...++..+..+ +++|+++.+..+...++|..++
T Consensus 293 ~~----~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~~~~ig 351 (352)
T PF07690_consen 293 LP----FSSSPVWLII----ALFLIGFGFGIVFPILFSLIQELVP-PEYRGTAFGLFNSIGSLGGIIG 351 (352)
T ss_dssp SH----HHCHHHHHHH----HHHHHHHHHHHHCHHHHHHHHCCCH-TCHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHC
Confidence 11 1111121111 1234667777777777888888875 5789999999988888887654
No 202
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=98.55 E-value=7.6e-06 Score=75.31 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=45.7
Q ss_pred HHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH
Q 021040 44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL 99 (318)
Q Consensus 44 ~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~ 99 (318)
.++.+.++.+. |.++.+.|.+..+..+...++.++.|++.||+||||.. ..+...
T Consensus 214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~ 269 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNML-RFGLWI 269 (377)
T ss_pred HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH-HHHHHH
Confidence 34456677775 99999999999999999999999999999999999884 455544
No 203
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.54 E-value=1.9e-05 Score=71.19 Aligned_cols=163 Identities=18% Similarity=0.147 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
..+.+....+.+-+.+. |.+..|.+++.........+.+-.+|..+||+||||-+..........+... +.
T Consensus 91 ~m~~m~~s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is--------~~ 162 (528)
T KOG0253|consen 91 AMEMMLLSLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVIS--------GA 162 (528)
T ss_pred HHHHHHHHHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhh--------cC
Confidence 33444555666666777 9999999999988888999999999999999999998643222222222111 12
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (318)
+++ ..+ .+++..+.++|.+. .+...++..|..|. .+|...+-+. ....+|.+....+....+..
T Consensus 163 spn--f~~----L~~f~~l~~~g~gg-~pv~~~~yle~lp~-~~r~~~~V~~-~~waig~v~ea~law~vm~~------- 226 (528)
T KOG0253|consen 163 SPN--FAS----LCVFRALWGFGVGG-LPVDSAIYLEFLPS-SHRWLLTVMS-FFWAIGQVFEALLAWGVMSN------- 226 (528)
T ss_pred CCC--eeh----hhHHHHHHhccCCC-ccHhHHHHHHhccC-cCCCcchhHH-HHHHHHHHHHHHHHHHHHHh-------
Confidence 222 222 13334556666665 22234555666654 4555544333 56677877776666555543
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
.+|||..+....+..+. ...+++++|++
T Consensus 227 ---~gwr~~l~~~~~pl~~~-a~f~~w~~ESp 254 (528)
T KOG0253|consen 227 ---FGWRYLLFTSSTPLMFA-ARFLVWVYESP 254 (528)
T ss_pred ---hhHHHHHHHHHhHHHHH-HHHHhhcccCc
Confidence 57888876655443333 34457788875
No 204
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.54 E-value=6.5e-06 Score=74.23 Aligned_cols=133 Identities=9% Similarity=-0.074 Sum_probs=83.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 31 SGHMLNDITAACWFTYLLLFLTDI---GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~~~---gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
++.|...........+++.|+++. |+++.+.+...+.+.....++..+.++++||+|+||. +.++.++.+++....
T Consensus 147 ~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~-l~~~~~l~~~~~~l~ 225 (310)
T TIGR01272 147 LGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRY-LAFNAFLAVLLSIGA 225 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHH-HHHHHHHHHHHHHHH
Confidence 344555556666778899999862 8999999999999999999999999999999999887 556666655554333
Q ss_pred hCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 108 FGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
.. .+. .. ..... .+.+++.+...+...+...+..++ +.+.+.++. ..+.+|+.+.+.
T Consensus 226 ~~-------~~~--~~-~~~~~----~l~g~~~s~i~P~~~s~a~~~~~~--~~~~asai~-~~~~~Gg~i~P~ 282 (310)
T TIGR01272 226 AL-------THG--YV-AMWFV----LALGLFNSIMFPTIFSLALNALGR--HTSQGSGIL-CLAIVGGAIVPL 282 (310)
T ss_pred HH-------cCC--HH-HHHHH----HHHHHHHHHHHHHHHHHHHhhhhh--hhhhhHHHH-HHHHhcchHHHH
Confidence 21 111 11 11111 235566666665555555554432 233344443 344455554443
No 205
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=98.54 E-value=5e-06 Score=77.63 Aligned_cols=131 Identities=14% Similarity=0.082 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccch
Q 021040 44 FTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTL 122 (318)
Q Consensus 44 ~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~ 122 (318)
..++|.|+++.+.++.+.|++.++..+.........+.+.|| ++.|+. +..+.++.+++...+.. .++ .
T Consensus 228 ~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~~~~l~~-------~~~--~ 297 (400)
T PRK11646 228 MLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR-LMAGLLIMSLSMFPIGM-------VSN--L 297 (400)
T ss_pred HHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHH-------hhh--H
Confidence 456788888875577889998888777766666666777764 565554 45566666655443321 111 1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 123 KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
....+ ...+.+.+.+...++..++..+..| +++|++..+..+....+|..+++.+++.+.+.
T Consensus 298 ~~~~~----~~~l~~~g~~~~~p~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~ 359 (400)
T PRK11646 298 QQLFT----LICLFYIGSIIAEPARETLSASLAD-ARARGSYMGFSRLGLALGGAIGYIGGGWLFDL 359 (400)
T ss_pred HHHHH----HHHHHHHHHHHHHccHHHHHHhcCC-cccchhhhhHHHHHHHHHHHhcccchHHHHHH
Confidence 21111 1123455555556666777778775 57899999999998889988888887777654
No 206
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=98.53 E-value=9.8e-06 Score=75.21 Aligned_cols=62 Identities=13% Similarity=0.001 Sum_probs=49.2
Q ss_pred HHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 45 TYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 45 ~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
.+.+.++.+. |.+..+.+.+.....+...++.++.|+++||+|||+. +..+.++..++...+
T Consensus 224 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~-~~~~~~~~~~~~~~~ 286 (392)
T PRK10473 224 NTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTL-MLTSQVLFLAAGITL 286 (392)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHH
Confidence 3445566655 9999999999999999999999999999999999987 456666666655443
No 207
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.53 E-value=8.5e-06 Score=77.85 Aligned_cols=150 Identities=11% Similarity=0.093 Sum_probs=91.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCC
Q 021040 34 MLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMP 113 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~ 113 (318)
+.......+...+.+.|.+...-+....+++..+..+...++.|++++++||+|||+.+ .++.++.+++....+. ..
T Consensus 241 ~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~-~~~~~~~~~~~~~~~~--~~ 317 (473)
T PRK10429 241 LAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILW-AGASIFPVLSCGVLLL--MG 317 (473)
T ss_pred HHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH-HHHHHHHHHHHHHHHH--Hh
Confidence 33444444555555544444433567778888877888899999999999999999985 4555554444333221 00
Q ss_pred CcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc------cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 114 CRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS------TSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~------~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
+....+.+. + .+...+.+++.+.......++++|..+.. ++.+...+......-+|..+++.+.+.++
T Consensus 318 --~~~~~~~~~-~---~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l 391 (473)
T PRK10429 318 --LAAPHNALL-I---VIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVL 391 (473)
T ss_pred --ccCchhHHH-H---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111221 1 12223456666666666777888875421 11244678888888888888888877777
Q ss_pred Hhhcc
Q 021040 188 SVSTA 192 (318)
Q Consensus 188 ~~~~~ 192 (318)
+..+.
T Consensus 392 ~~~Gy 396 (473)
T PRK10429 392 GLIGY 396 (473)
T ss_pred HHcCC
Confidence 65543
No 208
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=98.50 E-value=5.8e-06 Score=75.54 Aligned_cols=145 Identities=11% Similarity=0.007 Sum_probs=86.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH-HHH-HHHHHHHHHHh
Q 021040 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG-AGS-VLVAVSFSSVF 108 (318)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~-~g~-~~~~i~~~~~~ 108 (318)
..+...........+++.|+++. |.++.+.+.......+...++.++.|+++||+++||.... ... ....++....+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
T TIGR00881 224 GYVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW 303 (379)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh
Confidence 33333344445667888998886 9999999999999999999999999999998643332122 111 11112211111
Q ss_pred CCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 109 GGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
. . +..+..... +...+.+...............|..+ +++|+++.++.+....+|..+++.+.+.+.+
T Consensus 304 ~--~-----~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~ 371 (379)
T TIGR00881 304 L--N-----PAANPLMDL----ICLFALGFLVYGPQMLIGVIASELAP-KKAAGTAAGFVGFFAYLGGILAGLPLGYLAD 371 (379)
T ss_pred c--C-----cchhHHHHH----HHHHHHHHHHhhhhHHHHHHHHHhcC-cchhHHHHHHHHHhhhhhhhhhhhhHHHHHH
Confidence 1 1 111111111 11122332222222233455667765 5789999999998888888877776666554
No 209
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.49 E-value=4.6e-06 Score=79.12 Aligned_cols=187 Identities=14% Similarity=0.062 Sum_probs=111.7
Q ss_pred CCCCchhh------hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc----
Q 021040 19 QPVGRWSV------LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG---- 87 (318)
Q Consensus 19 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G---- 87 (318)
++.|++++ ++..+..++..........|+|.|++|+ |.+-.+.|+..++..+...+...+.|.++||.-
T Consensus 247 ~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~l 326 (466)
T KOG2532|consen 247 PPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRIL 326 (466)
T ss_pred CCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 46676664 4556677888888888889999999997 999999999999999999999999999999653
Q ss_pred ----CchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhH
Q 021040 88 ----HFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVV 163 (318)
Q Consensus 88 ----rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~ 163 (318)
+||.+=.++....++++..+- +.+........+.+.+.....++..+..... ..|.. ++--+.
T Consensus 327 s~t~~rkifn~i~~~~~ai~l~~l~-------~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~----~~~~a--pq~a~~ 393 (466)
T KOG2532|consen 327 SETTVRKIFNTIAFGGPAVFLLVLA-------FTSDEHRLLAVILLTIAIGLSGFNISGFYKN----HQDIA--PQHAGF 393 (466)
T ss_pred chHhHHHHHHhHHHHHHHHHHHeee-------ecCCCcchHHHHHHHHHHHHcccchhhhHhh----hhhcc--chHHHH
Confidence 344443344444444433221 1222122222222211101111111111111 11111 233456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040 164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (318)
Q Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 225 (318)
+.++.+....++.++++.+. +.+-.. +....|++.|++.+++.++..++..++.+
T Consensus 394 l~g~~~~~~~~~~~~~P~~v----g~~~~~---~t~~eW~~VF~i~a~i~~~~~i~f~~f~s 448 (466)
T KOG2532|consen 394 VMGIINFVGALAGFIAPLLV----GIIVTD---NTREEWRIVFLIAAGILIVGNIIFLFFGS 448 (466)
T ss_pred HHHHHHHHHHHHHHHHHHhe----eeEeCC---CCHHHHHHHHHHHHHHHHHhchheeEeec
Confidence 67777776666665544433 322211 13578999999998888887766665543
No 210
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.42 E-value=1.2e-06 Score=80.28 Aligned_cols=125 Identities=18% Similarity=0.099 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 39 TAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 39 ~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
.......+++.|+++. |.++.+.+....+..+...++.++.|+++||+||||.+ ..+......+...+.. .. .
T Consensus 240 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~-~~~~~~~~~~~~~~~~--~~---~ 313 (366)
T TIGR00886 240 SFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKL-LMSFLGVAMGAFLVVL--GL---V 313 (366)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhH-HHHHHHHHHHHHHHHh--cC---C
Confidence 3445567788899886 99999999999999999999999999999999998874 4444444444332221 00 1
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g 175 (318)
.+.+........ .+..++.+.......+..++..+ ++|+.+.+..+...++|
T Consensus 314 ~~~~~~~~~~~~----~~~~~~~g~~~~~~~~~~~~~~~--~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 314 SPLSLAVFIVLF----VALFFFSGAGNGSTFALVPHIFR--RATGAVSGLVGAIGNLG 365 (366)
T ss_pred CcchHHHHHHHH----HHHHHHhccccchhhhcchhhch--hhcccHHHHHHHhccCC
Confidence 110122111111 12233344444445566677653 57888888766654443
No 211
>PRK10133 L-fucose transporter; Provisional
Probab=98.39 E-value=2.6e-05 Score=73.80 Aligned_cols=117 Identities=13% Similarity=-0.009 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCC
Q 021040 35 LNDITAACWFTYLLLFL-TDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCM 112 (318)
Q Consensus 35 ~~~~~~~~~~~~l~~~l-~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~ 112 (318)
...........+++.|+ ++. |.++.+.|+.+....+...++.++.|++.||+||||. +..+.++.++.......
T Consensus 269 ~~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~-l~~~~~~~~~~~~~~~~--- 344 (438)
T PRK10133 269 CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAMALCLISAF--- 344 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH---
Confidence 33333444456778785 455 9999999999999999999999999999999999988 45555554444332211
Q ss_pred CCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH
Q 021040 113 PCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR 168 (318)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~ 168 (318)
.++ .. ....+ .+.+++.+...+...+...+..+ ++.+.+.++.
T Consensus 345 ----~~~--~~-~~~~~----~l~glg~~~i~P~~~s~a~~~~~--~~~~~as~l~ 387 (438)
T PRK10133 345 ----AGG--HV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLG--QDTKYGSSFI 387 (438)
T ss_pred ----cCC--hH-HHHHH----HHHHHHHHHHHHHHHHHHHcccc--hhhccchhHH
Confidence 111 11 11111 34667777777666666655443 2333444444
No 212
>PRK11043 putative transporter; Provisional
Probab=98.39 E-value=2.7e-05 Score=72.43 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
....+.|.++++.|.+..+.|+......+...++..+.+++.||+|+||. +..+.+..+++...++. .. .....+
T Consensus 221 ~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~~~~ 295 (401)
T PRK11043 221 AWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQL-LPWLLVLFAVSVIAIWL--AS--LLSHPS 295 (401)
T ss_pred HHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHHHHHH--HH--HhccCc
Confidence 34456777777779999999998888888888899999999999998886 33444433333222210 00 000111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
.....+. ..+.+++.+...+...+...+.. +++|+++.++.+.....+...++.+
T Consensus 296 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~g~~~~~~~~~~~~~~~~ 350 (401)
T PRK11043 296 LVPLLIP----FCVMAAANGAIYPIVVAQALRPF--PQATGKAAALQNTLQLGLCFLASLL 350 (401)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHHHhhhC--cccChHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 12344455544444444443433 3578999888887665555544433
No 213
>PRK11462 putative transporter; Provisional
Probab=98.35 E-value=0.00015 Score=69.18 Aligned_cols=141 Identities=12% Similarity=0.020 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 38 ITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 38 ~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
+...+.......|.+.. |. +...+.++....+...++.+++++++||+|||+.+. .+....++.....+. .+
T Consensus 242 ~~~~~~~~~~~y~~~y~~g~-~~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~-~~~~~~~~~~~~~~~--~~--- 314 (460)
T PRK11462 242 LAVCVRGGAMMYYVTWILGT-PEVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFW-WTNALLAVISLAMFF--VP--- 314 (460)
T ss_pred HHHHHHHhHhhhhhhhhcCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHH-HHHHHHHHHHHHHHH--hc---
Confidence 33333444445555555 43 344566777888888999999999999999988753 333323232222221 11
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc-----cch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS-----TSR-VVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~R-~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
..+.....+ ..++.+++.+.......++++|..+.. ++| +...+.......+|..+++.+++.+++..
T Consensus 315 --~~~~~~~~~----~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~ 388 (460)
T PRK11462 315 --MQASITMFV----FIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYG 388 (460)
T ss_pred --hhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111111111 112345555555555566777765311 222 33345566778888888888887777654
Q ss_pred c
Q 021040 191 T 191 (318)
Q Consensus 191 ~ 191 (318)
+
T Consensus 389 G 389 (460)
T PRK11462 389 G 389 (460)
T ss_pred C
Confidence 3
No 214
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.35 E-value=4.1e-05 Score=71.92 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCC
Q 021040 33 HMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGC 111 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~ 111 (318)
.+.......+..+....|.+.. |-+..+..+.+........++.++...+++|+||||.+ .++.++.+++...+|+
T Consensus 245 ~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~-~~~~~~~~i~~~~~~f-- 321 (467)
T COG2211 245 NLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLF-LIGLLLLAVGYLLLYF-- 321 (467)
T ss_pred HHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHH-HHHHHHHHHHHHHHHh--
Confidence 3444444555555555555555 88888888888888888888899999999999999996 5678888888777764
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCcc-----ch-hHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNST-----SR-VVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~R-~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
.| .++.... .+..++.+++.+....-..++++|..+..| +| |...+......=+|..++..+.+.
T Consensus 322 ~~-----~~~~~l~----~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~ 392 (467)
T COG2211 322 TP-----AGSVVLI----VVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGW 392 (467)
T ss_pred hc-----CcchHHH----HHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 1222221 222245678888877777889998863211 12 344566666667777777777677
Q ss_pred HHHhhcc
Q 021040 186 VFSVSTA 192 (318)
Q Consensus 186 l~~~~~~ 192 (318)
.++..+.
T Consensus 393 ~L~~~Gy 399 (467)
T COG2211 393 ILGAIGY 399 (467)
T ss_pred HHHHcCC
Confidence 7776654
No 215
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.32 E-value=0.0033 Score=59.79 Aligned_cols=265 Identities=8% Similarity=-0.057 Sum_probs=126.0
Q ss_pred HHHHHHHHh-CC-----ChhHHHHHHHHHHHHHHHH-hhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCc--c
Q 021040 46 YLLLFLTDI-GL-----SPRGAAAVMLSGQIADGFA-TIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--I 116 (318)
Q Consensus 46 ~l~~~l~~~-gl-----s~~~~g~i~~~~~i~~~i~-~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~--~ 116 (318)
++..-++|. ++ ....+.++-+...+..++. .|+.+.+++|++|+|.+ .+....+...+.....--.|.. +
T Consensus 24 ~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf-~~~~~~F~~~f~lF~~vl~p~~~~~ 102 (472)
T TIGR00769 24 TILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALF-YTVISPFLGFFALFAFVIYPLSDLL 102 (472)
T ss_pred HHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhH-HHHHHHHHHHHHHHHHHHhcchhhc
Confidence 344445563 44 3356778877776666655 89999999999999885 3333333333221110001110 0
Q ss_pred cCcc---------c--hhHH-----HHHHHHHHHHHHHHHhhhHH-hHhhhccccccCccchhHHHHHHHHHHHHHHHHH
Q 021040 117 LSTS---------T--LKVE-----TISYCVFAAIFNVGWAATQV-AHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSL 179 (318)
Q Consensus 117 ~~~~---------~--~~~~-----~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~ 179 (318)
-++. + ..+. -..+.++.+...+-...... ...+...|++. .+|-.+..+....++++|.+++
T Consensus 103 ~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t-~~qakRfy~l~~~ganlg~i~s 181 (472)
T TIGR00769 103 HPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITT-IDEAKRFYALFGLGANVALIFS 181 (472)
T ss_pred CCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 0 0000 01112222222322222222 56778889875 4666788899999989888877
Q ss_pred HHHHHHHHHhhccCcccchhH--HHHHHHHHHHHHHHHHHHHHHhccccc---cc-------ccccCCCCchHHHHHHHH
Q 021040 180 YAIAFIVFSVSTAKTHADLEN--QYRWIAYSSIFIGCCFVGIFLSRTEEP---RL-------KMGLRGNSHARISWAYWF 247 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~--~~~~~~~i~~~~~~l~~~~~~~~~~e~---~~-------~~~~~~~~~~~~~~~~~~ 247 (318)
+.+...+.......+.+.... ...+...+.++.+.+...+....-++. +. +++++++.+..++++.++
T Consensus 182 g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~k~k~~~~es~k~i~ 261 (472)
T TIGR00769 182 GRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAIILLYWWVNRNVLTDPRSYNPALKEKKVKPKMSTMESLKFLV 261 (472)
T ss_pred HHHHHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccccchhhccccCCCCCCHHHHHHHHH
Confidence 655433332100000000011 112233333333333332322221211 10 011123445789999999
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccc---hhhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 248 KKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQS---AKALVPAIIYICSFIVSILLQVISLK 312 (318)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~---~~~~~~~~~~v~~~i~~~~~~~i~~~ 312 (318)
|+|.++.+++..++.....+....-.-..+.+...-+.+ ..+.+.....+.+++...+.+++-||
T Consensus 262 ~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~ 329 (472)
T TIGR00769 262 SSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRK 329 (472)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887777666666555554443333333443321111 23333334444444444444554444
No 216
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.31 E-value=3.1e-05 Score=67.22 Aligned_cols=122 Identities=17% Similarity=0.134 Sum_probs=76.1
Q ss_pred HHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHH
Q 021040 47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVE 125 (318)
Q Consensus 47 l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 125 (318)
.++.+++. |+|.+|...+-....++..+ .++.|.+.||+|.+-+ +.+|.+...+++..+|. +.- .-.+..+.+ .
T Consensus 24 yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~-l~iG~~~~~~GY~~~~l-~~~-~~i~~~~~~-~ 98 (250)
T PF06813_consen 24 YSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV-LLIGAVLGFVGYGLLWL-AVS-GRIPSLPVW-L 98 (250)
T ss_pred hhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHH-HHh-CccCccchH-H
Confidence 35556664 99999999999999999876 6899999999999877 67899999999887774 111 111111222 2
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
...+ .++.+.+.+..+.+.-....+.+ +++||.+.++.-....+++.+
T Consensus 99 ~~~~---~~l~~~s~~~~~ta~lvt~~~NF--P~~RG~vvgilk~~~GLSaai 146 (250)
T PF06813_consen 99 MCLF---LFLGGNSSCWFNTASLVTCVRNF--PRSRGTVVGILKGFFGLSAAI 146 (250)
T ss_pred HHHH---HHHHcccHHHhhhHHHHHHHHhC--ccccCceehhhhHHHHhHHHH
Confidence 2111 12222232222222111122334 368999999877776666554
No 217
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.22 E-value=6.9e-05 Score=68.82 Aligned_cols=129 Identities=12% Similarity=0.118 Sum_probs=90.3
Q ss_pred HHHHHHHHH-hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchh
Q 021040 45 TYLLLFLTD-IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLK 123 (318)
Q Consensus 45 ~~l~~~l~~-~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~ 123 (318)
+.-..|-.. +|++..++.++.....+..+++..+.|+|.||+|.|+. +..+.++..+..+...+ ... ..
T Consensus 273 ~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~v-l~~~lvi~~~~~~~~~~-------~~~--~~ 342 (438)
T COG2270 273 AMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPV-LMIGLVILSIAALYLIF-------LEG--EL 342 (438)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcee-ehHHHHHHHHHHHHHHH-------ccc--cH
Confidence 445677774 59999999999999999999999999999999999877 45666555554332221 111 11
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 124 VETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
. +.+...+.+...+..+....++.+++.|+ ++-++..++.+...-.+..+++...+.+..
T Consensus 343 -~---f~i~gll~g~s~G~~qA~SRSy~~~lvp~-~k~~~fFglyaltgra~S~~gp~lv~v~t~ 402 (438)
T COG2270 343 -D---FWILGLLVGTSLGGAQASSRSYLARLVPK-GKEGRFFGLYALTGRAASFLGPFLVAVITQ 402 (438)
T ss_pred -H---HHHHHHHHHHhcchHHHHHHHHHHHhCCC-ccccceeehhhhhhhHHHHHHHHHHHHHHH
Confidence 1 12222356677777788888899999875 455677888888877777777666544443
No 218
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.20 E-value=0.0053 Score=57.69 Aligned_cols=265 Identities=13% Similarity=0.111 Sum_probs=131.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH-------HHHH
Q 021040 32 GHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-------VAVS 103 (318)
Q Consensus 32 ~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~-------~~i~ 103 (318)
+++......-++..-.+.|+.++ .-+--..+..-..-.+..++..|..|.+.||..|.|. +....+. .++.
T Consensus 10 sh~ls~w~dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~-~~~~l~~Qn~sv~~s~~~ 88 (432)
T PF06963_consen 10 SHFLSTWGDRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKV-IRTSLVVQNLSVAASCAL 88 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhh-HHHHHHHHHHHHHHHHHH
Confidence 33433444445656678888887 3243334444444456677899999999999988876 3333221 1112
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHH---HHHHHHHHHHhhhHHh-Hhhhcccccc-CccchhHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYC---VFAAIFNVGWAATQVA-HMSMVNCITL-NSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~-~~~~~~~~~~-~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
+..++. .+.. ...+.......+. +..++-..+..+..+. ..=++..+.. ++++.++.++...-.-.+..++
T Consensus 89 ~~~l~~--~~~~--~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckll 164 (432)
T PF06963_consen 89 FLLLLS--YPSS--SSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLL 164 (432)
T ss_pred HHHHHh--CCcc--ccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHH
Confidence 222221 1100 0000111111111 1111122222222111 1112222331 3344566666655566667777
Q ss_pred HHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH-------hcccccccc-----cccC--CC--------
Q 021040 179 LYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL-------SRTEEPRLK-----MGLR--GN-------- 236 (318)
Q Consensus 179 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~-------~~~~e~~~~-----~~~~--~~-------- 236 (318)
++.+.+.+.+.. +......+.++..++..++=+ -.+|+-+.+ ++.+ ++
T Consensus 165 aPl~vG~l~t~~----------s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~ 234 (432)
T PF06963_consen 165 APLFVGLLMTFA----------SPVIAAIFIAGWNLASVFVEYFLLARVYNSVPALAVKKRSSESESSSDEESSSESSSD 234 (432)
T ss_pred HHHHHHHHhhcc----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHhcCCCCCccccccccccccccccch
Confidence 776666655432 333344444444433332221 122221111 0000 00
Q ss_pred C-----------chHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q 021040 237 S-----------HARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305 (318)
Q Consensus 237 ~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~ 305 (318)
. +..++|+.-+|+|-++......++... .-.+...+..|+..+ |+++..++..-.+..+.++.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T-VLsf~~lmt~yl~~~-G~s~~~igi~R~~gav~Gl~gT~~ 312 (432)
T PF06963_consen 235 PSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT-VLSFGGLMTAYLKSQ-GYSPSVIGIFRGLGAVFGLLGTWV 312 (432)
T ss_pred hhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 112335555666655544333333322 334566677888887 999999999999999999999999
Q ss_pred HHHHHHhh
Q 021040 306 LQVISLKL 313 (318)
Q Consensus 306 ~~~i~~~~ 313 (318)
.+++.+|+
T Consensus 313 ~p~l~~ri 320 (432)
T PF06963_consen 313 YPWLMKRI 320 (432)
T ss_pred HHHHHHHh
Confidence 99998875
No 219
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=98.15 E-value=0.0031 Score=58.50 Aligned_cols=240 Identities=11% Similarity=0.004 Sum_probs=134.5
Q ss_pred HHHHHHHHHh--CCChhHHH-HHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc
Q 021040 45 TYLLLFLTDI--GLSPRGAA-AVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST 121 (318)
Q Consensus 45 ~~l~~~l~~~--gls~~~~g-~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~ 121 (318)
||+.+|+++. |++..|+. -+.-+..-.....-.+...+.|..|.| |.++.+.+...+.+.++-+ .+ +
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Yk-pviil~~~~~i~t~~lll~-------~~--s 93 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYK-PVIILQALSYIITWLLLLF-------GT--S 93 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHHHH-------HC--c
Confidence 7899999884 88888876 334444445556677889999988765 5466666665555543321 11 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQ 201 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 201 (318)
... .-+..+.+|.+.+ ..+++.+++-... |+++..++++.......+|..+++.++..++.. + ..+
T Consensus 94 v~~----mq~~q~~yg~~~a-~evay~sYiys~v-~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~-~-------~~s 159 (412)
T PF01770_consen 94 VLA----MQLMQFFYGLATA-AEVAYYSYIYSVV-DKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF-G-------GVS 159 (412)
T ss_pred HHH----HHHHHHHHHHHHH-HHHHHHHHheeec-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-------CCC
Confidence 221 1222233444444 3556666664444 345666788887788888888888887766653 1 134
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccc-------c-----------c---c-cCC-----------CC-------chHH
Q 021040 202 YRWIAYSSIFIGCCFVGIFLSRTEEPRL-------K-----------M---G-LRG-----------NS-------HARI 241 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~~~~~~~e~~~-------~-----------~---~-~~~-----------~~-------~~~~ 241 (318)
+.....+......+..++. +++|.+++ + + + +++ +. ...+
T Consensus 160 y~~L~~isl~~~~~a~~~~-~fLP~~~~S~~f~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 238 (412)
T PF01770_consen 160 YFQLNYISLASVSLALLIA-LFLPMPKRSLFFHRKPPAEQDANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLWK 238 (412)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHcCCCCcccceeccCccccccccccccccccccccccccccCcccccchHHHHHHHHHH
Confidence 5545443322222222222 22332210 0 0 0 000 00 1224
Q ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc--cchhhHHHHHHHHHHHHHHHHHHHH
Q 021040 242 SWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG--QSAKALVPAIIYICSFIVSILLQVI 309 (318)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--~~~~~~~~~~~~v~~~i~~~~~~~i 309 (318)
.+++..+||.++.-.+-..+...++....+|.-.--.+...-+ ....+.+-.+..+.+.++++..+.+
T Consensus 239 ~~~~~y~~~~ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v 308 (412)
T PF01770_consen 239 DFKSCYSNPRLLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYV 308 (412)
T ss_pred HHHHHhcCchHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHh
Confidence 5566678888877777777888888777777655555541111 2345666555566666666666665
No 220
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.14 E-value=0.00021 Score=66.96 Aligned_cols=256 Identities=10% Similarity=0.057 Sum_probs=141.0
Q ss_pred HHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-----hccCchHHHHHHHHHHHHHHHHHhCCCCC------
Q 021040 47 LLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELID-----RFGHFKIWHGAGSVLVAVSFSSVFGGCMP------ 113 (318)
Q Consensus 47 l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-----r~Grr~~~l~~g~~~~~i~~~~~~~~~~~------ 113 (318)
+|..+++. +.|-+|.|....+.--- =...++..+.| |+||||.|++..-.+.++.++.+-. .+.
T Consensus 23 iPflL~~~~~~~sy~q~~~fSla~~Pf--SlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~-~i~~~~~~~ 99 (544)
T PF13000_consen 23 IPFLLQSMAKKVSYSQQAIFSLASYPF--SLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSY-NISQWLLFD 99 (544)
T ss_pred chhhhccccCCCChhHheeeeeeechh--HHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHh-ccchhhccc
Confidence 45566662 78888777553222111 12345566666 8999999988776666666554321 120
Q ss_pred ---Ccc-cCccc----hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 114 ---CRI-LSTST----LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 114 ---~~~-~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
-.. .+..+ .....++... ++.-+-.+-.+.+...+.-.+. .+++++-+...+..+.+.|..++..+.-.
T Consensus 100 ~~~d~~~~~~~~~~~~~~i~~Lt~~F--~~L~fl~ATQDIAVDGWALT~L-s~~n~~~ASTcqtvG~~~Gyfls~tvFla 176 (544)
T PF13000_consen 100 GVDDALLGQGESTVNNITIKFLTWFF--FILVFLCATQDIAVDGWALTML-SPENVGYASTCQTVGQTAGYFLSFTVFLA 176 (544)
T ss_pred ccchhhhcCCCCcccccchhHHHHHH--HHHHHHHccCCceeehhhhhhc-ChhhcchHHHHHHhHhhhhHHHHHHHHHh
Confidence 000 00000 0100111111 1122334445666655554443 24678888888888888887776544311
Q ss_pred HH-----HhhccCcccc----hhHHHHHHHHHHHHHHHHHHHHHHhccccccccc-----c---------c------CC-
Q 021040 186 VF-----SVSTAKTHAD----LENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM-----G---------L------RG- 235 (318)
Q Consensus 186 l~-----~~~~~~~~~~----~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~-----~---------~------~~- 235 (318)
+- +.+.+..+.+ ...+|- .+-|...++..+...++-+|++..+ + + ++
T Consensus 177 lns~~f~Nky~r~~p~~~glvtl~~yl---~fwg~~~l~~T~~v~~~k~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (544)
T PF13000_consen 177 LNSPDFCNKYLRSTPSDEGLVTLSGYL---KFWGWVFLIVTILVAFFKKEKPHSESLPKIEPINKSDGKSKEISIEYDES 253 (544)
T ss_pred hCCHHHHHHhcccCCCCCCeeeHHHHH---HHHHHHHHHHHHHHheEeecccccccCccccccccccccccccceecccc
Confidence 11 0010000111 011221 2223333444444556666653110 0 0 00
Q ss_pred C-------CchHHHH---HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHH
Q 021040 236 N-------SHARISW---AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSIL 305 (318)
Q Consensus 236 ~-------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~ 305 (318)
+ .+.++.| .+++|.|+...+++..+.+.+++.....-...-+.| .|++++.++.+..+.....++.++.
T Consensus 254 ~~~~~~~~~~i~~~Y~~l~~ilkLp~V~~li~ilL~~KigF~a~da~T~LKLlE-kG~~KE~LAl~~li~~P~qii~~~~ 332 (544)
T PF13000_consen 254 DVISTEEILSIKDVYKSLWKILKLPNVQTLIIILLTAKIGFQANDAVTSLKLLE-KGLSKEDLALLVLIDFPFQIILPYY 332 (544)
T ss_pred cccchhhhhhHHHHHHHHHHHHcCchHHHHHHHHHHHHhccccchhhhHHHHHH-cCCCHHHhHHHHHHhhhHHHHHHHH
Confidence 0 1123333 456788999999999999999988888877777777 4999999888888888899999999
Q ss_pred HHHHHHh
Q 021040 306 LQVISLK 312 (318)
Q Consensus 306 ~~~i~~~ 312 (318)
.+|+++-
T Consensus 333 ~~Kws~g 339 (544)
T PF13000_consen 333 IGKWSAG 339 (544)
T ss_pred hhhhhcC
Confidence 9998764
No 221
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.14 E-value=2.2e-05 Score=75.35 Aligned_cols=173 Identities=15% Similarity=0.125 Sum_probs=107.0
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH-HHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG-AGSVLVAVS 103 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~-~g~~~~~i~ 103 (318)
..+.+.++.....+...+-..+++.|..+.|.+..+++.++++..+.+.++.++.|+++|+...++.++. ++.+..+++
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~ 378 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLA 378 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHH
Confidence 3455566655555666666677888888889999999999999999999999999999999885555443 333443344
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
. ++ .| +.. +. ..+..+. ++++++.+....-......|+.. .++-..+.++......++.+++
T Consensus 379 ~--~~---~p--~~~--~~-~~l~~~~---~~fG~~~g~~~~l~~~i~~~~~g-~~~l~~a~Gl~l~~~gi~~l~g---- 440 (509)
T KOG2504|consen 379 R--LF---LP--FAT--TY-VGLIVFS---ILFGFCVGSFSSLTPVILVDLVG-LEKLSNAYGLLLLFQGIGALVG---- 440 (509)
T ss_pred H--HH---HH--Hhc--cH-HHHHHHH---HHHHHHHHHHHHHHHHHHHHHcC-hhhcchHHHHHHHHhHHHHHcC----
Confidence 3 22 22 111 12 2233332 34666655554444445566654 3455677788777777666654
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
+|+.+.+- |...+|...+...++..++...++
T Consensus 441 pPiag~~~-----d~tg~Y~~~f~~~g~~~~~s~~~~ 472 (509)
T KOG2504|consen 441 PPIAGLLY-----DITGNYDHAFYFCGLCFLLSAVLL 472 (509)
T ss_pred cccceeee-----eccCCeeeehhhcChHHHHHHHHH
Confidence 45555332 222347777777666655555443
No 222
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.14 E-value=0.00024 Score=65.88 Aligned_cols=128 Identities=13% Similarity=0.014 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCcc
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTS 120 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~ 120 (318)
....+.+.++++. |.++.+.|++.....+...++.++.+++.||+||+.. . +.....++....+. + ......
T Consensus 225 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~-~--~~~~~~~~~~~~~~---~-~~~~~~ 297 (394)
T PRK11652 225 VFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMW-Q--SVICCLLAGLLMWI---P-GWFGVM 297 (394)
T ss_pred HHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHH---H-HHhccc
Confidence 3345567788885 9999999999888888888999999999999984333 2 22222222111110 0 000011
Q ss_pred chhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 121 TLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
+.+.. .....+.+++.+...+...+...|..+ ++++...+..+...++|..+++.+
T Consensus 298 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~lg~~~~~~~ 353 (394)
T PRK11652 298 NVWTL----LVPAALFFFGAGMLFPLATSGAMEPFP--YLAGTAGALLGGLQNIGSGLAALL 353 (394)
T ss_pred cHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhcc--ccchHHHHHHHHHHHHHHHHHHHH
Confidence 11211 111234556666656666666666553 567888888877777777665443
No 223
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.10 E-value=0.00048 Score=64.06 Aligned_cols=179 Identities=9% Similarity=0.041 Sum_probs=104.9
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh----CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI----GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLV 100 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~ 100 (318)
+.+.+.+...+....+.+....++.|+++. +.+....|.+.++..+..++.-.+...+.+|+|.|+.. +++...+
T Consensus 221 ~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~L-llag~i~ 299 (412)
T PF01306_consen 221 NFWFFVLFVIGVAAIYDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLL-LLAGVIM 299 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHH-HHHHHHH
Confidence 334444444444444555555567777764 45667899999999999999999999999999999984 4555555
Q ss_pred HHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHH
Q 021040 101 AVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSL 179 (318)
Q Consensus 101 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~ 179 (318)
.+=+.... +.++ .+. ..+...+.++-.+...++..-++.+..+ ++-.+++..+. +....+|..+.
T Consensus 300 ~iRi~~~~-------~~~~--~~~----i~~~klLH~~e~~l~lva~fkYI~~~fd-~rlsAt~y~v~~~~~~~~~~~i~ 365 (412)
T PF01306_consen 300 AIRIIGSG-------FATN--PWV----ISLIKLLHALEFPLLLVAAFKYITAHFD-KRLSATLYLVGFQFAKQIGIIIL 365 (412)
T ss_dssp HHHHHHHH-------T--S--HHH----HHHHHHHHHHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHh-------hhcc--hHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHH
Confidence 55443332 1221 221 1222344555556666665666666543 33344444432 34445555544
Q ss_pred HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 021040 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
+.+.+.+.+ ..+++..+++.+.+.+.+.++..+..++++
T Consensus 366 s~~~G~lyd----------~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 366 SPLAGYLYD----------RIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred hhhHHhhHh----------hcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 444444433 356777788888887777777777766543
No 224
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.06 E-value=6.6e-06 Score=71.60 Aligned_cols=244 Identities=8% Similarity=-0.031 Sum_probs=133.1
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (318)
+++.++.-++.++++.-+.+...++|++.|| +|-|.--++.+...+.-- +.|. .. ++. +..+ ....-+
T Consensus 75 ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~Gq--liFa--~G-gi~--~aFw----~M~~GR 143 (459)
T KOG4686|consen 75 NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQ--LIFA--AG-GIS--HAFW----TMLAGR 143 (459)
T ss_pred ccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHH--HHHH--hc-hHH--HHHH----HHHhhh
Confidence 6777788899999999999999999999995 665543222222222111 1221 00 111 1122 223333
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc--ccchhHHHHHHH-HHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT--HADLENQYRWIA-YSSI 210 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~-~i~~ 210 (318)
+++|+|.-...++.+.+....+. -||-..+.++.....-+|..+-..+.+++.+..+..- .+....+....+ ...+
T Consensus 144 F~FGIGgESlAVaQN~yav~wFK-GKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc 222 (459)
T KOG4686|consen 144 FLFGIGGESLAVAQNKYAVYWFK-GKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTC 222 (459)
T ss_pred eeeccCchhhhhhhcceeEEEec-CccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 56777766667777877766654 4777888888887777777654444555554433211 111111211111 2223
Q ss_pred HHHHHHHHHHHhcccccccc--cccCC---CCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccccc
Q 021040 211 FIGCCFVGIFLSRTEEPRLK--MGLRG---NSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQ 285 (318)
Q Consensus 211 ~~~~l~~~~~~~~~~e~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~ 285 (318)
....++++.. -...++.+. +.++. +.....+.+. -.|++|.+....++......-+.+.-|.++++++|+++
T Consensus 223 ~~slical~l-g~~D~rAerilh~e~g~~Ge~pkLtdv~~--f~ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~ 299 (459)
T KOG4686|consen 223 KQSLICALSL-GLSDDRAERILHLEEGFLGEEPKLTDVNT--FYPPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSA 299 (459)
T ss_pred HHHHHHHHHh-hhhhhHHHHHHhhhcCcccCCcccccccc--cCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCCh
Confidence 3334443322 111221111 01111 1111111111 13678888888888888888888888999999999997
Q ss_pred chhhHHH----HHHHHHHHHHHHHHHHHHHhh
Q 021040 286 SAKALVP----AIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 286 ~~~~~~~----~~~~v~~~i~~~~~~~i~~~~ 313 (318)
.+...+. .+..+.+-+.+.+.||.++++
T Consensus 300 ~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~ 331 (459)
T KOG4686|consen 300 VSAGNILSTVYGISAVLSPVFGAISDKYGFNL 331 (459)
T ss_pred hhccchhhhhhhhhhhhhhhHHHhHhhhccee
Confidence 5444333 344455556666666666554
No 225
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=97.96 E-value=0.00018 Score=68.70 Aligned_cols=162 Identities=9% Similarity=-0.019 Sum_probs=102.5
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc---cchhHHHHHHH
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST---STLKVETISYC 130 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 130 (318)
.|.++.++|++.....+...++..+.+++.+|++.|+. +.++.++.+++...... ....+... ...+. . .
T Consensus 283 lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~-l~~~~~l~~~~~~~~~~--l~~~~~~~~gi~~~~~-~---~ 355 (468)
T TIGR00788 283 LPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLL-FGVTTLLYTLSSLFDLI--LVKRWNLAFGISDEVF-V---L 355 (468)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHH-HHHHHHHHHHHHhCcee--eeeccccccCCCCeee-e---e
Confidence 49999999999999999999999999999999998887 56677766665432210 00000000 00111 1 1
Q ss_pred HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHH
Q 021040 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSI 210 (318)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~ 210 (318)
...++.+++.+....+...++.+..+ ++++++..++.+...++|..++..+++.+...++.. .| ..+-.|...+.+
T Consensus 356 ~~~~l~~~~~g~~~~~~~~~~~~~~p-~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~--~~-~~~~~~~~i~i~ 431 (468)
T TIGR00788 356 GDSIIAEVLAQLKFMPFLVLLARLCP-SGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT--CD-NSNNLWLLILGH 431 (468)
T ss_pred ehhHHHHHHHHHHHccHHHHHHHhCC-CCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cc-cccchHHHHHHH
Confidence 11134556666777777888888875 578899999999999999999888887777665521 11 122233333333
Q ss_pred HHHHHHHHHHHhcccc
Q 021040 211 FIGCCFVGIFLSRTEE 226 (318)
Q Consensus 211 ~~~~l~~~~~~~~~~e 226 (318)
.+.-+..+....++|+
T Consensus 432 ~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 432 SLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3333333444457785
No 226
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=97.87 E-value=0.00058 Score=65.61 Aligned_cols=172 Identities=9% Similarity=-0.008 Sum_probs=94.3
Q ss_pred HHHHHHHHH-hCCCh----hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchH------HHHHHHHHHHHHHHHHhC-C-C
Q 021040 45 TYLLLFLTD-IGLSP----RGAAAVMLSGQIADGFATIFIGELIDRFGHFKI------WHGAGSVLVAVSFSSVFG-G-C 111 (318)
Q Consensus 45 ~~l~~~l~~-~gls~----~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~------~l~~g~~~~~i~~~~~~~-~-~ 111 (318)
..++.|.++ .+.+. -..+.+..+..+...+..|+.|.+.||.|||+. -+.+|.++.++++..+.. . .
T Consensus 290 ~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~ 369 (489)
T PRK10207 290 TSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMW 369 (489)
T ss_pred cHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666664 22111 022344445556677889999999999998862 135677777766542210 0 0
Q ss_pred CCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 112 MPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
.. ......+.++....+ ++.++|.....++..+.+.+..| ++.++.+++..+....+|+.++..++......-.
T Consensus 370 ~~-~~~~~~s~~~~i~~~----~l~g~Ge~~~~~~g~~~~~~~aP-~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~ 443 (489)
T PRK10207 370 FA-DAQGLTSPWFIVLVY----LFQSLGELFISALGLAMIAALVP-QHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDN 443 (489)
T ss_pred hc-CCCCccCHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 00 000112334333333 45678888888777777777665 5778999999888888888776555422110000
Q ss_pred cCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 192 AKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 192 ~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
..++......+.+.+...++.++++.++.+.
T Consensus 444 ~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 444 ITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 0000001123566666666555555554433
No 227
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=97.83 E-value=0.00082 Score=64.32 Aligned_cols=143 Identities=10% Similarity=-0.118 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCh----hHHHHHHHHHHHHHHHHhhhhHH----Hhhh-ccCchHH-HHHHHHHHHHH
Q 021040 35 LNDITAACWFTYLLLFLTDI-GLSP----RGAAAVMLSGQIADGFATIFIGE----LIDR-FGHFKIW-HGAGSVLVAVS 103 (318)
Q Consensus 35 ~~~~~~~~~~~~l~~~l~~~-gls~----~~~g~i~~~~~i~~~i~~p~~G~----lsDr-~Grr~~~-l~~g~~~~~i~ 103 (318)
.....+.-..+.++.|..+. +.+. ...+++.++-.+...+.+|+... +.|| .+.+.+. +.+|.++.+++
T Consensus 283 ~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~ 362 (475)
T TIGR00924 283 VFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGAS 362 (475)
T ss_pred HHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHH
Confidence 33444444556677777663 3332 22678888888888888888664 4444 2222221 25677777777
Q ss_pred HHHHhCCCCCCcc-cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRI-LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 104 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
+..+.. .....- ....+.++..+.+ ++.++|.....+...+++.+..| ++.|++..+.......+|..+++.+
T Consensus 363 ~~~~~~-~~~~~~~~~~~s~~~~i~~~----~~~~~ge~~~~p~~~~~~~~~aP-~~~~g~~~g~~~l~~~~g~~l~~~~ 436 (475)
T TIGR00924 363 FLTFAA-SIWFADAGGLTSPWFMVLIY----LFQTLGELMISPLGLSWWTKIAP-QRLMGQMLGMWFLAQAMGSLLGGYL 436 (475)
T ss_pred HHHHHH-HHhhcCCCCccCHHHHHHHH----HHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 654321 000000 0012344444433 45778888888888889988876 5789999999988888887776555
Q ss_pred H
Q 021040 183 A 183 (318)
Q Consensus 183 ~ 183 (318)
.
T Consensus 437 ~ 437 (475)
T TIGR00924 437 A 437 (475)
T ss_pred H
Confidence 4
No 228
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=97.79 E-value=0.0002 Score=69.27 Aligned_cols=167 Identities=13% Similarity=-0.022 Sum_probs=85.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC-----c
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-----T 119 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-----~ 119 (318)
.|.+.++++.|.+... .+...+..+...++..+.+.+.||+|||+. ++.+...+.++...+.. .. .... .
T Consensus 316 ~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~~t~~~~~lvd~~gRr~l-ll~s~~~m~~~~~~~~~--~~-~~~~~~~~~~ 390 (513)
T KOG0254|consen 316 YYSTTIFKSAGLKSDT-FLASIILGVVNFLGTLVATYLVDRFGRRKL-LLFGAAGMSICLVILAV--VG-VFALYYPNSS 390 (513)
T ss_pred eehHHHHHhcCCCCch-HHHHHHHHHHHHHHHHHHHHHHHHhccHHH-HHHhHHHHHHHHHHHHH--HH-HHhccCCCcc
Confidence 4566666666665332 344444555666667777999999999987 67788877777654421 10 0000 0
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHhHh-hhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 120 STLKVETISYCVFAAIFNVGWAATQVAHM-SMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
....+..+... +++...++....+.. .+.+|+.| .+-|++..++....+.+.+.+...........
T Consensus 391 ~~~~~~~~~~~---~~~v~~f~~g~g~v~w~~~sEifp-~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~--------- 457 (513)
T KOG0254|consen 391 KGAGWLAIVFL---CLFIFSFAIGWGPVPWVIVSEIFP-LRLRSKGASLAVAVNWLWNFLISFFFPFITEA--------- 457 (513)
T ss_pred cchhHHHHHHH---HHHHHHHhcccccchhhhhhccCc-HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 01111111111 122223333222333 35577775 56788887776666555544332221111111
Q ss_pred hHHHHHHHHHHHHHHHHHHH-HHHhcccccccc
Q 021040 199 ENQYRWIAYSSIFIGCCFVG-IFLSRTEEPRLK 230 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~~l~~~-~~~~~~~e~~~~ 230 (318)
.+....+..++..+.+... ..++++||++..
T Consensus 458 -~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~ 489 (513)
T KOG0254|consen 458 -LGIGGTFGYFGGICLLSLIIFVFFFVPETKGL 489 (513)
T ss_pred -ccccchHHHHHHHHHHHHHHHheEEcccCCCC
Confidence 1123345455555555555 566788997543
No 229
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00012 Score=69.85 Aligned_cols=83 Identities=17% Similarity=0.152 Sum_probs=64.4
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh----ccCchHHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR----FGHFKIWHGAGSVL 99 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr----~Grr~~~l~~g~~~ 99 (318)
+.+.+++..+...+..+....++|.|+++. |.|..+.+.+.....+..+++.++.|.++|| +.+|..+.....+.
T Consensus 274 ~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 274 GVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred hHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 355777777777788777888999999995 8999999999999999999999999999999 66666544433344
Q ss_pred HHHHHHHH
Q 021040 100 VAVSFSSV 107 (318)
Q Consensus 100 ~~i~~~~~ 107 (318)
..++...+
T Consensus 354 ~~~g~~~l 361 (495)
T KOG2533|consen 354 AIIGAISL 361 (495)
T ss_pred HHHHHHHH
Confidence 44443433
No 230
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=97.75 E-value=0.0016 Score=61.03 Aligned_cols=75 Identities=11% Similarity=0.053 Sum_probs=52.5
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
.++.+..........++++.|.++. +.+....+...+.......++..+.|++.||+++||. +.+..+..++...
T Consensus 238 ~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~-l~i~~~~~~~~~l 314 (410)
T TIGR00885 238 VIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKV-LMAYAIIGMALCL 314 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHH-HHHHHHHHHHHHH
Confidence 3344445555545668899998875 5666666666666677788999999999999999887 4455555555444
No 231
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=97.75 E-value=0.00014 Score=65.66 Aligned_cols=137 Identities=9% Similarity=-0.017 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (318)
Q Consensus 65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (318)
+.+..+....+.++.+.+.||+||||. |-...+++++..++++. |. ..+ ....+ . +...++.+...
T Consensus 387 llitslaefPGlLIt~~iverlGRKkT-Mal~l~~f~iflfll~~-c~----~rn---~~tvl-l----f~arafisg~f 452 (528)
T KOG0253|consen 387 LLITSLAEFPGLLITGVIVERLGRKKT-MALSLILFGIFLFLLTT-CK----TRN---AYTVL-L----FTARAFISGAF 452 (528)
T ss_pred HHHHHHhhCCchhHHHHHHHHhcchhH-HHHHHHHHHHHHHHHHH-hc----Ccc---hhHHH-H----HHHHHHHhchh
Confidence 345567778889999999999999999 66778888887766653 21 111 11111 1 11222222222
Q ss_pred HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 021040 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRT 224 (318)
Q Consensus 145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ 224 (318)
.....+.+|+.|. +-|+...|..+.+.-+|+++.+.++ +... .+-.....+++.++++..+..+++-
T Consensus 453 qvaYvYtPEVyPT-avRatgvGtcSsmaRIggI~~p~iA--~~~e----------~s~sl~i~vy~~~~ilagIavcffP 519 (528)
T KOG0253|consen 453 QVAYVYTPEVYPT-AVRATGVGTCSSMARIGGIFSPVIA--MRAE----------LSTSLPIFVYGALFILAGIAVCFFP 519 (528)
T ss_pred eEEEEecCcccch-hhhhcchhhhhhHHhhhhhhhhHHH--HHhc----------cceeehHHHHHHHHHHHHHHheeee
Confidence 2335677888864 6898888888888888888776654 2211 1223344667777777777776665
Q ss_pred cccc
Q 021040 225 EEPR 228 (318)
Q Consensus 225 ~e~~ 228 (318)
-|++
T Consensus 520 iEtk 523 (528)
T KOG0253|consen 520 IETK 523 (528)
T ss_pred eccC
Confidence 5553
No 232
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.005 Score=58.09 Aligned_cols=234 Identities=9% Similarity=-0.053 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (318)
Q Consensus 65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (318)
.++-.....+...+.+.+.|+.|.|.. +.+|...........+. .+ ....+ +-.++.|+|.+...
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~-lv~ga~~y~~f~~gfl~--------~N--~y~~y----fssallG~Gaallw 120 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWA-LVIGATCYAAFPLGFLF--------PN--SYYLY----FSSALLGFGAALLW 120 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHH-HHHHhHHHHHHHHHHHh--------cc--hHHHH----HHHHHhhhhHHhee
Confidence 444455566888999999999999988 56676665554332221 12 12111 22356788888777
Q ss_pred HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCc----ccchh-------HHHHHH--HHHHHH
Q 021040 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKT----HADLE-------NQYRWI--AYSSIF 211 (318)
Q Consensus 145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~----~~~~~-------~~~~~~--~~i~~~ 211 (318)
.....+..+... ++.+++..++.......+.++|+++. .++....... .++.. ...... +.+...
T Consensus 121 ~GqG~ylt~~st-~~tie~Nisi~Wai~~~~li~Ggi~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~ 198 (461)
T KOG3098|consen 121 TGQGGYLTSNST-RETIERNISIFWAIGQSSLIIGGIIL-FIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLA 198 (461)
T ss_pred cccceehhhcCC-hhhHHHHHHHHHHHHHHHHHhhhHhh-eeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHH
Confidence 777777777653 45667777766666666655554332 1111221110 01100 001111 111111
Q ss_pred HHHHHHHHHHhcccccccccccCCC-CchHHHHH---HHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccc--c
Q 021040 212 IGCCFVGIFLSRTEEPRLKMGLRGN-SHARISWA---YWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMG--Q 285 (318)
Q Consensus 212 ~~~l~~~~~~~~~~e~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~--~ 285 (318)
+..+.. +...+.|.++...+.+.. ....+..+ +++++|+.+.+....+...+........+|..+...++.. .
T Consensus 199 ~~~l~~-i~~~~~p~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~iypt~i~ft~~~~~n~ 277 (461)
T KOG3098|consen 199 ISVLSI-INFDFLPSKDVVNCKSSSETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISIYPTCISFTRKLGSNT 277 (461)
T ss_pred HHHHHh-hheeecCccchhhhhhhccccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhccchhhhhhhhccCcc
Confidence 111111 111222222111111111 23333333 5567788877777666666666666667777776664433 2
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040 286 S-AKALVPAIIYICSFIVSILLQVISLKLYSM 316 (318)
Q Consensus 286 ~-~~~~~~~~~~v~~~i~~~~~~~i~~~~~~~ 316 (318)
. ..+.......++.++++.....++||.++.
T Consensus 278 ~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~f 309 (461)
T KOG3098|consen 278 TYLIAIYSIGIGLGEVIGGLDFSILSKRIRGF 309 (461)
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhc
Confidence 2 334444566677888888888888888763
No 233
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=97.69 E-value=0.0029 Score=59.33 Aligned_cols=50 Identities=14% Similarity=0.133 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchH
Q 021040 42 CWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI 91 (318)
Q Consensus 42 ~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~ 91 (318)
.+..+.|.++++. |.++.+.++..........++..+.+.+.+|.+++|.
T Consensus 236 ~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~ 286 (413)
T PRK15403 236 SWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRF 286 (413)
T ss_pred HHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhH
Confidence 3445567888887 9999999999877777777888888887765555444
No 234
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=97.65 E-value=6.8e-05 Score=70.68 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 42 CWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
...+.++.|.+++|+++.++|.+...-.+..++..|++|.++||+-|||+.++.+.+....+.+++
T Consensus 29 ~l~pll~vy~kQLGl~p~~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a~fll 94 (618)
T KOG3762|consen 29 SLFPLLAVYFKQLGLNPAVVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTATFLL 94 (618)
T ss_pred ccchHHHHHHHHcCCCHHHhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhe
Confidence 466889999999999999999999999999999999999999999999996655555555554444
No 235
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=97.59 E-value=0.019 Score=52.93 Aligned_cols=168 Identities=12% Similarity=0.027 Sum_probs=104.6
Q ss_pred HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
..+....+=||=-|+ |+|..+...+.........++-...|++..| .++++. ..+|....++++..+.. + +..
T Consensus 224 ~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~-a~~G~~~~~~~f~lii~-a---~~~ 298 (403)
T PF03209_consen 224 FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRT-AALGCLLGALAFALIIL-A---GPL 298 (403)
T ss_pred HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHH-HHHHHHHHHHHHHHHHH-H---Hhc
Confidence 334444555777776 9999999999988888888888899999884 555554 67788887777665421 1 111
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHAD 197 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 197 (318)
.+.+.+... .+++|++.+...+..-+.+-|++. +++.+...+........+..++..+++.+.+........+
T Consensus 299 --~~~~~~~~~----~~l~G~g~G~f~vgals~mM~lt~-~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~ 371 (403)
T PF03209_consen 299 --GSPWLFRPG----VFLLGLGNGLFTVGALSLMMDLTS-AGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNS 371 (403)
T ss_pred --ccchHHHHH----HHHHHHhhhHHHHHHHHHHHhCCC-CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 122322221 246788888888777777778875 3455666666666666666666666666554321111112
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 021040 198 LENQYRWIAYSSIFIGCCFVGI 219 (318)
Q Consensus 198 ~~~~~~~~~~i~~~~~~l~~~~ 219 (318)
...+|...|.+-+.+.+++.++
T Consensus 372 ~~~aY~~VF~lEa~ll~~a~~l 393 (403)
T PF03209_consen 372 PALAYGVVFALEAVLLLAALVL 393 (403)
T ss_pred cchHHHHHHHHHHHHHHHHHHH
Confidence 3467777776655554444433
No 236
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=97.58 E-value=0.041 Score=47.59 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCh--hHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCc
Q 021040 42 CWFTYLLLFLTDIGLSP--RGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILST 119 (318)
Q Consensus 42 ~~~~~l~~~l~~~gls~--~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~ 119 (318)
......+.+..+.+.+. .+.+++.....+...+.+++.|.++||+|||+. +..+.....++...... . .+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~--~-----~~ 91 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKV-LIIGLLLFLLGTLLLAL--A-----PN 91 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHH-HHHHHHHHHHHHHHHHh--C-----cc
Confidence 34445556666665555 588999999999999999999999999999976 44455433333222211 1 11
Q ss_pred cchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCcccch
Q 021040 120 STLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNA-FTMVANLSLYAIAFIVFSVSTAKTHADL 198 (318)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~-~~~~g~~~~~~~~~~l~~~~~~~~~~~~ 198 (318)
....... +.....+++.+...+...++..|..++.++|+...+.... ...+|..+++.+++.+... .
T Consensus 92 ~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------- 159 (338)
T COG0477 92 VGLALLL----ILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA-L------- 159 (338)
T ss_pred chHHHHH----HHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-------
Confidence 1112112 2222355666666666677888876430357776666655 3555555554333333222 1
Q ss_pred hHHHHHHHHHHHHHH
Q 021040 199 ENQYRWIAYSSIFIG 213 (318)
Q Consensus 199 ~~~~~~~~~i~~~~~ 213 (318)
...|++.+.+.....
T Consensus 160 ~~~~~~~~~~~~~~~ 174 (338)
T COG0477 160 LWGWRAAFLLAALLG 174 (338)
T ss_pred hcchHHHHHHHHHHH
Confidence 246777555544444
No 237
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=97.54 E-value=0.012 Score=56.27 Aligned_cols=154 Identities=11% Similarity=0.084 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccC-chHHHHHHHHHHHHHHHHHhC-CCCCC----------cccCccchhHHHHHHH
Q 021040 63 AVMLSGQIADGFATIFIGELIDRFGH-FKIWHGAGSVLVAVSFSSVFG-GCMPC----------RILSTSTLKVETISYC 130 (318)
Q Consensus 63 ~i~~~~~i~~~i~~p~~G~lsDr~Gr-r~~~l~~g~~~~~i~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~ 130 (318)
+.+....+...+.+.+.-.+.+|+|+ |+.| ..+.++.++++....+ ...+. .+.++....+. .+
T Consensus 309 ~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~-~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~l 384 (477)
T TIGR01301 309 FGLMLNSVVLGITSIGMEKLCRGWGAGKRLW-GIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKAS---AL 384 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHH---HH
Confidence 45566666666777888888999996 4554 5676677776654431 00000 00000000111 11
Q ss_pred HHHHHHHHHHhhhHHhHhhhccccccC-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHH
Q 021040 131 VFAAIFNVGWAATQVAHMSMVNCITLN-STSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSS 209 (318)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 209 (318)
+...+.|+.++.....=.+++++..++ .++.|...++.|.+..+.+++.+...+++...+++ +-.+.+.+.
T Consensus 385 ~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~--------~~~~~~~~~ 456 (477)
T TIGR01301 385 IVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGG--------GNLPAFVVG 456 (477)
T ss_pred HHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCC--------CCeeHHHHH
Confidence 222457788876544334555555543 23458889999999999999988777775555442 223455666
Q ss_pred HHHHHHHHHHHHhcccccc
Q 021040 210 IFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 210 ~~~~~l~~~~~~~~~~e~~ 228 (318)
++..++.++...+.+|+++
T Consensus 457 gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 457 AVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 6677777777777777754
No 238
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.52 E-value=0.00052 Score=62.68 Aligned_cols=183 Identities=14% Similarity=0.140 Sum_probs=100.1
Q ss_pred CCCCCCCchhhhh-----hcccc-hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccC
Q 021040 16 SFTQPVGRWSVLY-----YGSGH-MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH 88 (318)
Q Consensus 16 ~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Gr 88 (318)
.++++.++|+.+. ...+. .......+..-+-++.|..|. ..+..++|++..-..+..+++.++.|.++||+++
T Consensus 256 ~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~ 335 (464)
T KOG3764|consen 256 STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPH 335 (464)
T ss_pred ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCc
Confidence 4556666776542 22221 111223333446678888886 7677799999999999999999999999999995
Q ss_pred chHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHH---hHhhhccccccCc--cchhH
Q 021040 89 FKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQV---AHMSMVNCITLNS--TSRVV 163 (318)
Q Consensus 89 r~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~--~~R~~ 163 (318)
-| |+....-+..++.. .. ++| +.+ +...+.+-. +..+++.+..+. |......|..++. +-.+.
T Consensus 336 ~~-wl~~~~gl~~~G~~-~~--~iP--~~~--~~~~L~vp~----~~l~~~i~~~dasl~P~l~~lvd~rh~s~~~vYGs 403 (464)
T KOG3764|consen 336 LR-WLLSLGGLATVGVS-SG--PIP--FAT--SIAQLWVPN----FGLGFGIGLADASLIPTLGYLVDPRHVSGFNVYGS 403 (464)
T ss_pred hh-HHHHHHHHHHHHHH-hc--hhH--hhh--hHHHHhhhh----HHHHHHHHHHHHHHhhhhHHhcchhhccccceeee
Confidence 44 33222222222221 11 233 111 122111111 223333333333 3233333332211 13466
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 164 LTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 164 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
..++...+..+|..+++.+++.++. ..+|+|...+.++..++-+.+.
T Consensus 404 VyaIad~a~sla~a~GP~~gg~iv~----------~iGF~wl~~iig~~n~iyapvl 450 (464)
T KOG3764|consen 404 VYAIADAAFSLAYAIGPTFGGSLVE----------AIGFEWLMTIIGILNLIYAPVL 450 (464)
T ss_pred HHHHHHHHHHHhhhccccccchhee----------ehhHHHHHHHHHHHHHHHHHHH
Confidence 7777777767777666655544442 3678999888877776666544
No 239
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=97.41 E-value=0.011 Score=56.95 Aligned_cols=113 Identities=12% Similarity=0.006 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhhhh----HHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC---ccchhHHHHHHHHHH
Q 021040 61 AAAVMLSGQIADGFATIFI----GELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS---TSTLKVETISYCVFA 133 (318)
Q Consensus 61 ~g~i~~~~~i~~~i~~p~~----G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 133 (318)
.++..++-.+...+..|+. +++.||.+.++. +.+|.++.++++..+.. .. ...+ ..+.++....+
T Consensus 318 ~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~-~~~G~~l~~l~f~~l~~--~~-~~~~~~~~vs~~~~~~~~---- 389 (500)
T PRK09584 318 PEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHK-FAIGMVLCSGAFLVLPL--GA-KFANDAGIVSVNWLIASY---- 389 (500)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHH-HHHHHHHHHHHHHHHHH--HH-HhcCCCCccCHHHHHHHH----
Confidence 4555666666666777777 555555555455 56788888888765431 00 0000 01123333333
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
++.++|.....+...+++.+..| ++.|+++.+.......+|..+++.+
T Consensus 390 ~l~~~ge~~~~p~g~s~~~~~aP-~~~rg~~~g~~~l~~a~g~~~~g~~ 437 (500)
T PRK09584 390 GLQSIGELMISGLGLAMVAQLVP-QRLMGFIMGSWFLTTAGAALIAGYV 437 (500)
T ss_pred HHHHHHHHHHhHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677887777777888888876 5789999998776666666554433
No 240
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=97.12 E-value=1.4e-06 Score=82.34 Aligned_cols=163 Identities=13% Similarity=-0.020 Sum_probs=83.9
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccc---hh
Q 021040 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTST---LK 123 (318)
Q Consensus 47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~---~~ 123 (318)
.+..+++.|.+.. -.......+...++.++...+.||+|||+. ++.+....+++...+.. ......+.+ ..
T Consensus 276 ~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~-~i~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 276 SPSIFENAGISNS--FLATLILGLVNFLGTLLAIFLIDRFGRRKL-LIIGLLLMAICSLILGI---IFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccc--cccccccccccccccccccccccccccccc-ccccccccccccccccc---cccccccccccccc
Confidence 3333344466665 111223335556677778899999999988 45676666655443310 000111110 11
Q ss_pred HHHHHHHHHHHHHHHHHh-hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHH
Q 021040 124 VETISYCVFAAIFNVGWA-ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQY 202 (318)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 202 (318)
...... .+...+++ ...+....+.+|+.| .+.|.+..++......+++.+++.+...+... .+-
T Consensus 350 ~~i~~~----~l~~~~~~~g~~~~~~~~~~ElfP-t~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~----------~~~ 414 (451)
T PF00083_consen 350 LSIVFL----ALFFAFFSLGWGPLPWIYTAELFP-TKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNN----------LGG 414 (451)
T ss_pred ccceee----eecccccccccccccccccccccc-cccccccccccccccccccccccccccccccc----------ccc
Confidence 111111 11212222 122233466789886 47888888877776666665544332222211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040 203 RWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (318)
Q Consensus 203 ~~~~~i~~~~~~l~~~~~~~~~~e~~~~ 230 (318)
...+.+.+.++.+..+..++++||++.+
T Consensus 415 ~~~~~i~~~~~~i~~i~~~~~lpET~g~ 442 (451)
T PF00083_consen 415 WGVFLIFAGVCLIAIIFVYFFLPETKGK 442 (451)
T ss_pred cccchhhHHHHHHHHhheeEEEeeCCCC
Confidence 2234555566666767778889998644
No 241
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=96.95 E-value=0.075 Score=49.01 Aligned_cols=138 Identities=10% Similarity=0.005 Sum_probs=85.7
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
....++.|...........+++.|+.|. |++..+.+..++.+....+++..+.-++..|+...|.+...+.....+...
T Consensus 239 ~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~ 318 (422)
T COG0738 239 RLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLA 318 (422)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777888999999995 999999999999999999999988888888998888754443333333322
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
..+ .++ .. ..+.+ .+.++..+...+...++..+..++ .++..+..-.+..+|+++.+.+
T Consensus 319 ~~l--------~~g--~v---~~~~l--~~ig~F~simfPTIfslal~~l~~---~ts~~s~~l~maivGGAiiP~l 377 (422)
T COG0738 319 VAL--------IGG--VV---ALYAL--FLIGLFNSIMFPTIFSLALKNLGE---HTSVGSGLLVMAIVGGAIIPPL 377 (422)
T ss_pred HHH--------hcC--hH---HHHHH--HHHHHHhHHHHHHHHHHHHhccCc---cccccceeeeeheecchHHHHH
Confidence 222 111 11 11221 235566666666666665555542 2233333334445565544433
No 242
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=96.71 E-value=0.0018 Score=56.29 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.9
Q ss_pred HhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH
Q 021040 53 DIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG 94 (318)
Q Consensus 53 ~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~ 94 (318)
..|.-+.++|.+...+.-...+...+.|.++||-||||..+.
T Consensus 66 tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvt 107 (454)
T KOG4332|consen 66 TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVT 107 (454)
T ss_pred hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceee
Confidence 348889999999888777788889999999999999998543
No 243
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0021 Score=59.91 Aligned_cols=181 Identities=13% Similarity=-0.032 Sum_probs=93.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhCCChhHHHH----HHHHH-----HHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040 33 HMLNDITAACWFTYLLLFLTDIGLSPRGAAA----VMLSG-----QIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (318)
Q Consensus 33 ~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~----i~~~~-----~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~ 103 (318)
.|..++..+..+.+....++.+|..+..... -.+.. ......+.++..+++|+.|||+. .+-|..++.+.
T Consensus 313 WFllDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~i-q~~GF~~~~i~ 391 (538)
T KOG0252|consen 313 WFLLDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYI-QLMGFFIMTIF 391 (538)
T ss_pred HHhhhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHH-HHhhHHHHHHH
Confidence 3445555544445555555655544332222 12222 22233466677788999999988 56788887777
Q ss_pred HHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 104 FSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
++.+. .|. .+..+....++.|.+..++..+|=+. .....-+|.+| .+-|+...++..+.+-.|++++....
T Consensus 392 ~~~~~---~~y--~~~~~~~Gf~v~y~l~~ff~NFGPn~---ttfivpaE~FP-arvR~t~hGIsAA~GK~GAivg~~~F 462 (538)
T KOG0252|consen 392 FFVIA---GPY--NQLENTIGFVVLYSLTFFFGNFGPNA---TTFIVPAEIFP-ARVRSTCHGISAASGKAGAIVGAFGF 462 (538)
T ss_pred HHHHc---CCc--ccccccCceeehHHHHHHHHhcCCCc---eeEEeehhhch-HHHhhhhhhHHHHhccchHHHHHHHh
Confidence 66553 221 11111111223332221222222111 11223356665 46788888887777777777665544
Q ss_pred HHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 184 FIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
.++...- . + ...+.++.+++.+.++++..+. .+++||+..
T Consensus 463 ~~~t~~~-y--p--~~~g~~~v~~i~~~~~~~gi~~-T~l~pEtk~ 502 (538)
T KOG0252|consen 463 LYLTDHN-Y--P--PNIGVRNVFIILAGCMLLGILF-TLLIPETKG 502 (538)
T ss_pred hHhhhcc-C--C--ccccchHHHHHHHHHHHHhHhe-eEEeecccc
Confidence 3433210 0 0 1245678888877666655444 456678743
No 244
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.49 E-value=0.86 Score=43.78 Aligned_cols=133 Identities=10% Similarity=0.051 Sum_probs=71.3
Q ss_pred HhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CcccchhHHHHH----HHHHHHHHHHHHHHHHH
Q 021040 147 HMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA-KTHADLENQYRW----IAYSSIFIGCCFVGIFL 221 (318)
Q Consensus 147 ~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~----~~~i~~~~~~l~~~~~~ 221 (318)
..++..|+++ .+|-.+..+....++++|.++++.+...+...... ...+ ...|.. ...+..+.+.+...+..
T Consensus 165 FW~fAN~itt-~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~--~~~~~~~l~~l~~~v~~~g~~i~~~~~ 241 (491)
T PF03219_consen 165 FWGFANEITT-VEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAG--VDAWELSLNSLMGIVLILGIVIILLYR 241 (491)
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cccHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778764 56777888988888888888766554443331110 0001 122322 22222222222222221
Q ss_pred hc----cccccc------ccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccc
Q 021040 222 SR----TEEPRL------KMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLR 282 (318)
Q Consensus 222 ~~----~~e~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g 282 (318)
.. .+++.. +++++++.+.+++++.++|+|.++.+++...+.....+....-.-..+++.+.
T Consensus 242 ~~~~~vl~~~~~~~~~~~~kk~k~k~s~~es~k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~ 312 (491)
T PF03219_consen 242 YMNKNVLTDPRFYPSAKKKKKKKPKMSLKESFKLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYP 312 (491)
T ss_pred HHHHHccCccccchhhhcccccCCCccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 11 111111 11122345677899999999988888777777777766666655555555443
No 245
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=96.45 E-value=0.23 Score=39.96 Aligned_cols=102 Identities=14% Similarity=0.009 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhH
Q 021040 65 MLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQ 144 (318)
Q Consensus 65 ~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 144 (318)
+++.-...++..++.+.+.+|.|.|+. +.+|.+...+-....+. | + .+.. ....++.|++.+..-
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~s-m~lg~~~y~~y~~~~~~---~-----~--~~~l----~~~s~l~G~~~a~lW 107 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWS-MILGSLGYAIYIASFFY---P-----N--SYTL----YPASALLGFGAALLW 107 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHh---h-----h--HHHH----HHHHHHHhhhhHHhh
Confidence 334444456677788889999999988 56777766655433221 1 1 1111 222346778888777
Q ss_pred HhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 145 VAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 145 ~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
.+...++.+.. ++++|++-.++.......+.++|..+
T Consensus 108 ~aqg~ylt~~s-~~~~~~~~~~ifw~i~~~s~i~G~~~ 144 (156)
T PF05978_consen 108 TAQGTYLTSYS-TEETIGRNTGIFWAIFQSSLIFGNLF 144 (156)
T ss_pred HhhhHHHHHcC-CHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 77777777765 45778887777666656555555443
No 246
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=96.37 E-value=0.028 Score=53.62 Aligned_cols=140 Identities=16% Similarity=0.076 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcc
Q 021040 37 DITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRI 116 (318)
Q Consensus 37 ~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~ 116 (318)
......+.+|+--+++|.|-.+...|.+...--..-.+.-++.+.+..|.|+-+. +..|+....+=++..- .
T Consensus 384 G~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v-~~lgLa~~~~Rf~~~S---~---- 455 (618)
T KOG3762|consen 384 GAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNV-MYLGLACNVGRFLYYS---Y---- 455 (618)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccce-eeehhhHHHHHHHHHH---H----
Confidence 3444455566655566678788888877777777778889999999999999988 5667666555443221 1
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH-HHHHHHHHHHHHHHHHHHHHHhhc
Q 021040 117 LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC-RNAFTMVANLSLYAIAFIVFSVST 191 (318)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~~~g~~~~~~~~~~l~~~~~ 191 (318)
.. +.| ..+ -+-++.++..+.......+++.+..| ++-|+.+.++ +...-.+|--+|+++++.++..++
T Consensus 456 L~--n~W-~vL---Pieilqgit~aliWaa~~sY~s~vaP-p~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg 524 (618)
T KOG3762|consen 456 LQ--NPW-MVL---PIEILQGITHALIWAAIISYASHVAP-PGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFG 524 (618)
T ss_pred hc--Cch-hee---eHHHHHHHHHHHHHHHHHHHHHhhCC-CcchHHHHHHHHHHhcccCcchhhhhhhhhheeeh
Confidence 11 123 221 11234556666666666677777776 4667666654 444455666667777777665544
No 247
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=96.20 E-value=0.062 Score=38.30 Aligned_cols=64 Identities=19% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSV 107 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~ 107 (318)
+.+.+|...+|.++|.++.|++-+.-.++..++.+...++.+|..+|+. +..+.+...+....+
T Consensus 11 yTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~-~~~~l~~~~~~~~~m 74 (85)
T PF06779_consen 11 YTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRL-LRAGLLLTVLSTAAM 74 (85)
T ss_pred HHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHH-HHHHHHHHHHHHHHH
Confidence 4565666666679999999999999999999999999999988665555 567777766665544
No 248
>PF12832 MFS_1_like: MFS_1 like family
Probab=96.09 E-value=0.036 Score=38.83 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040 255 VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+-..+++...+......|+|.|+++ .|+++.+++.+..+..+.++++..+.+.+.||...
T Consensus 5 lk~~yf~~f~~~g~~~Pfl~~~~~~-~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~ 64 (77)
T PF12832_consen 5 LKAFYFFYFAALGCLYPFLPLYLKQ-LGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGK 64 (77)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 4456777788888899999999997 79999888888777777777777777777777654
No 249
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=95.86 E-value=0.038 Score=54.95 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=54.4
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhccCc-hHHHHHHHHHHHHH
Q 021040 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHF-KIWHGAGSVLVAVS 103 (318)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~Grr-~~~l~~g~~~~~i~ 103 (318)
..++.+..........+++|.|+++. |+++.+++++.....+ ..+++.++.|+++||++++ |..+.++.+...++
T Consensus 335 ~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~ 412 (633)
T TIGR00805 335 VILAQVIDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLS 412 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHH
Confidence 33444444555556778899999886 9999999999887776 5678999999999999833 33355555555554
No 250
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=95.68 E-value=1.5 Score=42.27 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhhccCc-h------HHHHHHHHHHHHHHHHHhCCCCCCcccC---ccchhHHHHHHH
Q 021040 61 AAAVMLSGQIADGFATIFIGELIDRFGHF-K------IWHGAGSVLVAVSFSSVFGGCMPCRILS---TSTLKVETISYC 130 (318)
Q Consensus 61 ~g~i~~~~~i~~~i~~p~~G~lsDr~Grr-~------~~l~~g~~~~~i~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 130 (318)
.++..++-++.-.+..|+.+++=.|.+|| | . ..+|.++.++++..+.. +..... ..+.+|.+..+
T Consensus 310 ~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~K-fa~g~~~~g~~f~~l~~---~~~~~~~~~~~s~~wl~~~~- 384 (493)
T PRK15462 310 TAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGK-FALGLGLMSAGFCILTL---SARWSAMYGHSSLPLMVLGL- 384 (493)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHH-HHHHHHHHHHHHHHHHH---HHhhcCCCCCcCHHHHHHHH-
Confidence 44666777777788889888886666332 1 2 35688888888765532 111111 12344544444
Q ss_pred HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHH-HHHHHHHH
Q 021040 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFT-MVANLSLY 180 (318)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~-~~g~~~~~ 180 (318)
.+..+|.-...+...++++++.| ++-|+..++...... .+|+.+++
T Consensus 385 ---~~~t~gEl~~sPvgls~~~~laP-~~~~g~~mg~w~l~~~~~~~~~~g 431 (493)
T PRK15462 385 ---AVMGFAELFIDPVAMSQITRIEI-PGVTGVLTGIYMLLSGAIANYLAG 431 (493)
T ss_pred ---HHHHHHHHHHChHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666666666788888875 578888888775432 45555443
No 251
>PRK03612 spermidine synthase; Provisional
Probab=95.58 E-value=1.8 Score=42.09 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=31.3
Q ss_pred HHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 021040 47 LLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (318)
Q Consensus 47 l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr 85 (318)
..-.+..+ |-+..+.+.+++++..+.++++.+.|++.++
T Consensus 37 ~~r~l~~~~G~s~~~~~~ii~~fl~glalGs~l~~~~~~~ 76 (521)
T PRK03612 37 LGTLASYLLGDSVTQFSTVIGLMLFAMGVGALLSKYLLRD 76 (521)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444544 8899999999999999999999998887743
No 252
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=95.38 E-value=1.5 Score=42.29 Aligned_cols=137 Identities=9% Similarity=-0.101 Sum_probs=71.9
Q ss_pred HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhh
Q 021040 71 ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSM 150 (318)
Q Consensus 71 ~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 150 (318)
.........+...||+|||.+ ...+.....++.+...+ .+ .....+...+... +..++.+.........
T Consensus 362 ~~~p~~~~~~~~~~~~gR~~~-~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 430 (521)
T KOG0255|consen 362 VELPAYFRNGLLLPEFGRRPP-LFLSLFLAGIGLLLFGW--LP----DDLGGWLHWILPL----LGKFFIGSAFNLIFLY 430 (521)
T ss_pred HHhhHHHHHHHHHHHhCcHHH-HHHHHHHHHHHHHHHHH--hh----ccchhHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 555566666899999999888 55666666666554432 11 1111001111111 1112222222222445
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Q 021040 151 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (318)
Q Consensus 151 ~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~ 230 (318)
..|+.|+ .-|..+.+.......+|.++++.+.. +..... .... ..+.+..+.+..++...++||+...
T Consensus 431 ~~el~pt-~~r~~~~~~~~~~~~~~~i~ap~~~~-~~~~~~--------~~~~--~~~~~~~~~l~~~~~~~~lpet~~~ 498 (521)
T KOG0255|consen 431 SAELIPT-VVRNTAVGAISAAARLGSILAPLFPL-LLRQMF--------PLLG--LILFGWLALLLGLLSLLLLPETKGK 498 (521)
T ss_pred HHhhccH-HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhc--------ccch--HHHHHHHHHHHHHHHHhcCcccCCC
Confidence 5677764 46888888888887888776654421 111110 1111 1124556666666777888998543
No 253
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=95.35 E-value=0.7 Score=43.62 Aligned_cols=125 Identities=15% Similarity=0.118 Sum_probs=85.6
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHH----HHHHHhCCCCCCcccCccc-
Q 021040 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAV----SFSSVFGGCMPCRILSTST- 121 (318)
Q Consensus 47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i----~~~~~~~~~~~~~~~~~~~- 121 (318)
...|++..|+++.++|..-+.+.+....+.....++.+|+|..|. =.++...-.. +....|. | ..+
T Consensus 281 mt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~-G~~~l~~q~~~L~~~v~~~~~---~-----~~~~ 351 (432)
T PF06963_consen 281 MTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRA-GLWSLWWQWVCLALCVVSFWA---P-----GSPF 351 (432)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-HHHHHHHHHHHHHHHHHHHhc---C-----CCCc
Confidence 345666679999999999999999999999999999999998777 3455543322 2222232 2 111
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 122 LKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
.......++...++..+|.-.++....-++.|..+ ++||+..++..+...++--++-..
T Consensus 352 ~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~-~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 352 SSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVP-ESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCC-HHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11111222222245678888888888778888775 589999999998888877765443
No 254
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=95.10 E-value=0.2 Score=46.24 Aligned_cols=116 Identities=11% Similarity=-0.072 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCc--cchhHHHHH
Q 021040 90 KIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNS--TSRVVLTSC 167 (318)
Q Consensus 90 ~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~R~~~~~~ 167 (318)
|. +.+|.++..++...+...+.|.....+.+....++.. .+..+|.+..-+...++.+|..+++ ++|.+...+
T Consensus 2 kt-I~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL----~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~ 76 (372)
T PF00854_consen 2 KT-ILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGL----ALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNW 76 (372)
T ss_dssp HH-HHHHHHHHHHHHHH--HHHTSSSC------CHHHHHH----HHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHH
T ss_pred Hh-hhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHH----HHHHhccccccccHHHHHHHHhcccchhhhhhhHHH
Confidence 44 4567777777766532101221111111112222222 2466888888888889999987653 456788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 168 RNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIF 220 (318)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~ 220 (318)
.+.+.|+|.+++..+.+. +. ...+|.+.|.+.++..++..+..
T Consensus 77 fY~~in~G~~~~~~~~~~-i~---------~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 77 FYWGINIGSLFSPTLVPY-IQ---------QNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHHHHHHCCCH-HH---------HCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhcccchh-hc---------cccchhhhhhHHHHHHHHHHHHH
Confidence 999999998876544322 21 12578777777665555444433
No 255
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=94.43 E-value=2.1 Score=42.17 Aligned_cols=112 Identities=14% Similarity=0.133 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHH
Q 021040 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVG 139 (318)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 139 (318)
..++......+...++..+.|.+.-+.+|-|-.++++.+++.++.-.+.. . -.++.+.. +.+. ++.+++
T Consensus 350 ~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~--~---~~~n~~~~---i~~~---~l~g~g 418 (599)
T PF06609_consen 350 EIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA--V---RPDNKNAA---IAFL---VLAGFG 418 (599)
T ss_pred eeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH--c---cCCCcchH---HHHH---HHHHHh
Confidence 56777777778888888999999988887776566776666554333321 1 01222222 2222 345566
Q ss_pred HhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 140 WAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
.+....+......-..+ +++-+.+.++......+|+.++..+.
T Consensus 419 iG~~~~~~~~~~ql~~p-~~~ig~a~gL~~s~R~~GGsIg~aIy 461 (599)
T PF06609_consen 419 IGGILVPAIVIAQLIVP-DEDIGTATGLTGSIRSIGGSIGYAIY 461 (599)
T ss_pred HHHHHHHHHHeeEeeeC-chHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 66655555444443344 35567776655555555555555443
No 256
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=94.22 E-value=2.3 Score=39.63 Aligned_cols=78 Identities=13% Similarity=-0.000 Sum_probs=38.8
Q ss_pred ccccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCCh--hHHHHHHHHHHHHHHHHhhhhHHHhh
Q 021040 8 NYDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSP--RGAAAVMLSGQIADGFATIFIGELID 84 (318)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~--~~~g~i~~~~~i~~~i~~p~~G~lsD 84 (318)
+++.+++++.+++...-..+.+.+-.++.-..|+...+--+.|..+. +-+. .........+.+...+....--.+.-
T Consensus 2 ~~~~~~~~~~p~d~~~~v~~i~~llGiG~LlpWN~fiTa~~y~~~~~~~~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~ 81 (406)
T KOG1479|consen 2 QDEVELDSPEPEDGYNLVYLIFLLLGIGTLLPWNMFITASDYYYYRFPGYHNSKNFTSSYTLAAQIPLLLFNLLNAFLNT 81 (406)
T ss_pred CccccccCCCcccccccHHHHHHHHhcccccchHhhhccHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444444433333333333444566777776656666665 4444 22333344444445555555555555
Q ss_pred h
Q 021040 85 R 85 (318)
Q Consensus 85 r 85 (318)
|
T Consensus 82 ~ 82 (406)
T KOG1479|consen 82 R 82 (406)
T ss_pred H
Confidence 6
No 257
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=93.84 E-value=1.2 Score=43.78 Aligned_cols=159 Identities=13% Similarity=0.072 Sum_probs=87.7
Q ss_pred CCchhhhhhcccc-hHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhh-hccCchHHHHHHH
Q 021040 21 VGRWSVLYYGSGH-MLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELID-RFGHFKIWHGAGS 97 (318)
Q Consensus 21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsD-r~Grr~~~l~~g~ 97 (318)
...|+-..+.++. .....+...+...+..|+++. +.+...+.-......-.........+.++| -+||.+. +.++.
T Consensus 33 ~g~~~s~~~il~~e~~e~~a~~g~~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~t-I~~~s 111 (571)
T KOG1237|consen 33 TGGWLSAPFILGNEVLERLAFFGLVSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFT-INIGS 111 (571)
T ss_pred echhHhHHHHHHHHHHHHHhHhcchhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHH-HHHHH
Confidence 3344445555554 333344444456678888875 777788888888888888888899999999 5889988 56676
Q ss_pred HHHHHHHHHHhC----C-CCC--C----cc--cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccC--ccch-
Q 021040 98 VLVAVSFSSVFG----G-CMP--C----RI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLN--STSR- 161 (318)
Q Consensus 98 ~~~~i~~~~~~~----~-~~~--~----~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~R- 161 (318)
++..++...+.. + ..| | .- -...+.....+.+... .+..+|.+...+...+.-+|-.++ ++++
T Consensus 112 ~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l-~lia~G~gg~r~~~~~fGadQfd~~~~~~~~ 190 (571)
T KOG1237|consen 112 LISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGAL-YLIALGAGGIRPCLLAFGADQFDELDPVEVK 190 (571)
T ss_pred HHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHH-HHheeccCCCCCcchhhcccccCccCcchhh
Confidence 666655332211 0 011 0 00 0000111112222111 123345565566666677776642 2222
Q ss_pred --hHHHHHHHHHHHHHHHHHHH
Q 021040 162 --VVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 162 --~~~~~~~~~~~~~g~~~~~~ 181 (318)
.+...+.+...++|.+++..
T Consensus 191 ~~~~fFnW~yf~~~~g~l~a~t 212 (571)
T KOG1237|consen 191 GIPSFFNWFYFSQNGGALLAQT 212 (571)
T ss_pred CcccchhHHHHHHHHHHHHHHH
Confidence 24456666667777665543
No 258
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=93.52 E-value=0.29 Score=45.88 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=38.2
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVS 103 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~ 103 (318)
|.+....|.+.....+...+++.+.|.+.||+.+.|.-+........++
T Consensus 297 gY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~ 345 (480)
T KOG2563|consen 297 GYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVG 345 (480)
T ss_pred cCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777888888888889999999999999999887766454444444444
No 259
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=92.57 E-value=1.3 Score=42.32 Aligned_cols=117 Identities=7% Similarity=-0.033 Sum_probs=77.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhH-HHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIG-ELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFA 133 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G-~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (318)
|.++.+.+...+...+...+.+.+.. .+.-.+|-|+. +..|+....+...... +.++ .+..+....
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~-i~lGl~~~~~~~~~~a-------f~~~--~w~~~~~~v--- 339 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRL-ISLGLLSEFLQLLLFA-------FATE--TWMMFAAGV--- 339 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH-hhHHHHHHHHHHHHHH-------Hhcc--chhhhHHHH---
Confidence 99999999999999999999998888 67777887774 6778777666654332 1222 122222221
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
.........+...+..+.+. +++||+++.++......+...+++.+-+.+.
T Consensus 340 --~~~~~~~~~pa~~s~~s~~v-~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~ 390 (463)
T KOG2816|consen 340 --VVALAGIVFPAIRAFASILV-SPEEQGKVFGIISGIEGLSGVVSPALYGNIF 390 (463)
T ss_pred --HHHhhcchhHHHHhHHHhhc-ccccccchhhHHHHHHHHhhhhhHHHHHHHH
Confidence 22222333444556666655 4689999999998888888877766655554
No 260
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=91.61 E-value=2.3 Score=40.22 Aligned_cols=160 Identities=8% Similarity=-0.005 Sum_probs=87.9
Q ss_pred CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC--C--CCCCcccCccchhHHHHHHHH
Q 021040 56 LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG--G--CMPCRILSTSTLKVETISYCV 131 (318)
Q Consensus 56 ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~ 131 (318)
.++...|.+..++.++..++..+....--++.-|+.+ .+..+..++..+.-.. . ....+. ++. +. .+.
T Consensus 252 fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~-~~t~~~~~~~~l~~~~lv~~~n~~~Gi-~d~--~f----~lg 323 (433)
T PF03092_consen 252 FSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIF-VVTTLVSVLASLFDLLLVTRWNLDLGI-PDQ--WF----ALG 323 (433)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH-HHHHHHHHHHhcccEEEEEEEeeeeCc-CCe--EE----EEE
Confidence 7888899888888888887777776655556556664 3444443333221100 0 000000 111 10 011
Q ss_pred HHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHH
Q 021040 132 FAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIF 211 (318)
Q Consensus 132 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 211 (318)
-.++..+.......|...+.+++-| +...+...++.....|+|..++..++..+...++-. .+.-.+..+..++..+
T Consensus 324 d~~l~~~~~~i~~mP~lvl~a~lcP-~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt--~~~f~~l~~lili~~~ 400 (433)
T PF03092_consen 324 DTILEEVIGMIAFMPSLVLAARLCP-KGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVT--RDDFSNLWLLILICSV 400 (433)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHCC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cccccchHHHHHHHHH
Confidence 1123444455556677777888876 456688888888889999988888877776655411 0112233444455555
Q ss_pred HHHHHHHHHHhccccc
Q 021040 212 IGCCFVGIFLSRTEEP 227 (318)
Q Consensus 212 ~~~l~~~~~~~~~~e~ 227 (318)
.. +..+....++|+.
T Consensus 401 ~~-ll~l~ll~lLp~~ 415 (433)
T PF03092_consen 401 IQ-LLPLPLLFLLPPQ 415 (433)
T ss_pred HH-HHHHHHHHHcCCC
Confidence 54 3444444455553
No 261
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=90.02 E-value=11 Score=36.12 Aligned_cols=194 Identities=11% Similarity=-0.052 Sum_probs=91.8
Q ss_pred chhhhhhcccchHHHHHHHHHH---HHHHHHHHHh-CCC----hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCc--hHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWF---TYLLLFLTDI-GLS----PRGAAAVMLSGQIADGFATIFIGELIDRFGHF--KIW 92 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~---~~l~~~l~~~-gls----~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr--~~~ 92 (318)
++|.+.+..-.+...+.|.... +-+..|..+. +-+ .-..++..+.-+++-.+.+|+.-++--|.+|| ++-
T Consensus 280 r~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps 359 (498)
T COG3104 280 RRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPS 359 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCC
Confidence 3444444444444445555443 4566666652 111 12334556666777778888888888874433 211
Q ss_pred ----HHHHHHHHHHHHHHHhCCCCCCcc-cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH
Q 021040 93 ----HGAGSVLVAVSFSSVFGGCMPCRI-LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC 167 (318)
Q Consensus 93 ----l~~g~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~ 167 (318)
.-.|..+++.+++.+-......+- .+..+.++....|.+ ..+|.=+..+.-.+.+..+.| +.-.+.+++.
T Consensus 360 ~~~KFalGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l----~s~gEL~iSpvGLs~~t~laP-~~~~s~~ma~ 434 (498)
T COG3104 360 TPIKFALGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVL----QSFGELFISPVGLSMVTKLAP-PALKSFIMAM 434 (498)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHH----HHHHHHHhCHHHHHHHHHhCh-HHHHHHHHHH
Confidence 245666666665543210000011 122345665555543 344444444444556666554 3344555665
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 021040 168 RNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE 225 (318)
Q Consensus 168 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~ 225 (318)
.-.....|+.++..+...-.. .+.........+.|..++..+++...+.....|
T Consensus 435 wfLt~a~~~~l~g~va~~~~~----~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 435 WFLTVAAGQTLGGQVAGLTAV----TDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHhhceecccccc----cchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 555555555444333210000 000011233445556666666655555444433
No 262
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=89.81 E-value=1.2 Score=38.75 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=55.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccc--cccccC--
Q 021040 159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPR--LKMGLR-- 234 (318)
Q Consensus 159 ~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~--~~~~~~-- 234 (318)
++|+..+....++-++|+++... |++-..+. ......+|++...+.+++.++-.++..++-+|-+ .+++++
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~i---pF~~~~~~--~~~~~~~W~~I~si~~lL~~IpLIly~ifGk~fd~~~~~~k~~k 76 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNI---PFLISSSV--VIALTNNWQWILSIFILLIFIPLILYIIFGKNFDIYSPKEKQEK 76 (267)
T ss_pred CccceeeeeccccchhhHHHHHh---hHHhcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCccccccc
Confidence 56677777777777888776543 22211000 0012457998887777766665555544433311 111111
Q ss_pred --CCCchHHHHHHHHhcHHHHHHHHHHHH
Q 021040 235 --GNSHARISWAYWFKKILYYQVALVYML 261 (318)
Q Consensus 235 --~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (318)
.+.+.+.++++.+|+|+-|..++.|-.
T Consensus 77 ~~~~~~~~~s~~~~LK~K~tw~w~~~Yg~ 105 (267)
T PF07672_consen 77 ENSTLSKKPSYKSILKEKETWKWILIYGI 105 (267)
T ss_pred ccccccccchHHHHHccchHHHHHHHHHH
Confidence 122345778999999998877655543
No 263
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=88.09 E-value=7.7 Score=36.01 Aligned_cols=122 Identities=14% Similarity=0.084 Sum_probs=75.1
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc-CchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHH
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG-HFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVF 132 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G-rr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (318)
+|.++.|.|-+++...+...+.|.......||.. .-+..+..+...+.-.+.++- .... ...+....
T Consensus 292 fg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-------~~~~--~~~l~~~s--- 359 (451)
T KOG2615|consen 292 FGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-------LART--PVVLYLGS--- 359 (451)
T ss_pred cCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHh-------cccc--chhhhHHH---
Confidence 4899999999999999999999999999999865 223334444444433433221 1111 11111111
Q ss_pred HHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 133 AAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 133 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+..+..+...+....++....+ ++||+.++|+....+.++=++|+.+.+.+..|
T Consensus 360 -~l~sf~~A~~vt~Lt~Lv~~~~~-~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~W 414 (451)
T KOG2615|consen 360 -TLKSFSTASVVTCLTSLVHKYGP-QSQRGTLNGIFRSLGALARAIGPLVSGVIFSW 414 (451)
T ss_pred -HHHHHHHHHhhHHHHHHHHhcCC-cccchHHHHHHHHHHHHHHHhhhhhhheeEEE
Confidence 23334444444455556655554 58999999998888888877776665444443
No 264
>PTZ00207 hypothetical protein; Provisional
Probab=84.57 E-value=13 Score=36.74 Aligned_cols=160 Identities=8% Similarity=-0.041 Sum_probs=84.3
Q ss_pred HHHHHHHh-CC-ChhHHHH-HHHHHHHHHHHHhhhhHHHhh---hcc-----CchHHHHHHHHHHHHHHHHHhCCCCCCc
Q 021040 47 LLLFLTDI-GL-SPRGAAA-VMLSGQIADGFATIFIGELID---RFG-----HFKIWHGAGSVLVAVSFSSVFGGCMPCR 115 (318)
Q Consensus 47 l~~~l~~~-gl-s~~~~g~-i~~~~~i~~~i~~p~~G~lsD---r~G-----rr~~~l~~g~~~~~i~~~~~~~~~~~~~ 115 (318)
+....+.+ |. +..+... ..++.+++++++....|+++. |.+ .|..++.+..+ +.++...++. .+|
T Consensus 376 ~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~-~~p-- 451 (591)
T PTZ00207 376 ARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFL-TLP-- 451 (591)
T ss_pred HHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHH-HCC--
Confidence 34444455 55 3332233 678889999999999999883 111 12233444444 4454444432 122
Q ss_pred ccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhccCc
Q 021040 116 ILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLY-AIAFIVFSVSTAKT 194 (318)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~~ 194 (318)
. ..+.+.++ +.+++++.......+...|++. |+-++...+....+.+|..+-. .+.+.+.+.=...+
T Consensus 452 ---~---~~L~~~~~----lvg~~~G~~~~~~~~i~selFg--k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~ 519 (591)
T PTZ00207 452 ---K---AALPLPYF----IAAFANGFMAATIALVTRTIFA--KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKL 519 (591)
T ss_pred ---c---cHhHHHHH----HHHHHhhHhHHHHHHHHHHHhc--cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1 11233443 4556666655555667788874 5677777777666677765532 12223332111100
Q ss_pred ccc---hhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 195 HAD---LENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 195 ~~~---~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
... ...=++..+++.++++++..+....
T Consensus 520 ~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 520 GQDVCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred CCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 000 1123777777777776666655543
No 265
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=80.23 E-value=56 Score=31.23 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhh---hccCchHHHHHHHHHHHHHHHHHhCCCCCCc--ccCccch----hHHHHHHH
Q 021040 60 GAAAVMLSGQIADGFATIFIGELID---RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCR--ILSTSTL----KVETISYC 130 (318)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~lsD---r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~ 130 (318)
..++-.....++..++....+.+++ |+||+.. +.++.++..+...+... ..|.- +.++... ........
T Consensus 280 ~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~-~~~~~~~~~~~~~li~l-~~p~dap~~~t~~~~~~~~~~~~~~~ 357 (461)
T KOG3098|consen 280 LIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPT-VLIGIIIHLIGFLLIHL-SFPNDAPLRPTDSPPLLFTPSYYLAL 357 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcc-hhHHHHHHHHHHHHHhc-cccccCCCCCCcccccccccchhHHH
Confidence 3444455556666667777888887 4888877 56666666666554433 22210 0011000 00111223
Q ss_pred HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (318)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (318)
+...+.|++-+..+......+++..+ ++|..+.++.-.-..++.
T Consensus 358 ii~~l~G~~D~~~~t~~~~ii~~~~~--~~~~~~fsi~kfyq~~~s 401 (461)
T KOG3098|consen 358 IIGFLLGFGDACFNTQRYVIIALLYP--DDRAQAFSLFKFYQSVAS 401 (461)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHH
Confidence 33456777777777777777777663 456655554433333343
No 266
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=75.00 E-value=74 Score=29.84 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHh
Q 021040 62 AAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWA 141 (318)
Q Consensus 62 g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 141 (318)
|.++.+--+-..+.....-+..+|..-+.. +....++..++++... +++ +.+..++. .++.+++.+
T Consensus 62 ~~Vlladi~P~l~~Kl~aP~fi~~v~y~~R-i~~~~~l~~~g~l~va-------~~~--~v~~~l~G----v~las~ssg 127 (402)
T PF02487_consen 62 GAVLLADILPSLLVKLIAPFFIHRVPYWIR-ILICVALSAAGMLLVA-------FSP--SVWVRLLG----VVLASLSSG 127 (402)
T ss_pred hHHHHHHHHHHHHHHHHhHhhhhhccchHH-HHHHHHHHHHHHhhee-------ecc--chhHHHHH----HHHHhhhhh
Confidence 345544445555666667778888663322 2345566666665432 122 22222222 133455555
Q ss_pred hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
...+...++... . ++ ... +....++..++++|+..
T Consensus 128 ~GE~tfL~lt~~-y---~~-~~l-~~wssGTG~aGl~Ga~~ 162 (402)
T PF02487_consen 128 LGEVTFLSLTHF-Y---GK-SSL-SAWSSGTGGAGLVGALY 162 (402)
T ss_pred hhHHHHHHHHHh-c---Cc-ccc-ccccCCcChhhHHHHHH
Confidence 555555555432 1 12 223 33445555566666544
No 267
>COG2119 Predicted membrane protein [Function unknown]
Probab=72.59 E-value=53 Score=27.07 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhCCChhHHHHHHH----------------HHHHHHHHHhhhhHHHhhhccCchHHHHHHHH
Q 021040 43 WFTYLLLFLTDIGLSPRGAAAVML----------------SGQIADGFATIFIGELIDRFGHFKIWHGAGSV 98 (318)
Q Consensus 43 ~~~~l~~~l~~~gls~~~~g~i~~----------------~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~ 98 (318)
..++...|+.|.| |++|++.+.. .-.+++.+.-..+.++++|+..|+. ..++.+
T Consensus 103 ~~tfi~~FlaE~G-DKTQiATIaLaA~~~~~~~V~~Gt~lg~~l~s~laVl~G~~ia~ki~~r~l-~~~aal 172 (190)
T COG2119 103 VTTFITFFLAELG-DKTQIATIALAADYHSPWAVFAGTTLGMILASVLAVLLGKLIAGKLPERLL-RFIAAL 172 (190)
T ss_pred HHHHHHHHHHHhc-cHHHHHHHHHhhcCCCceeeehhhHHHHHHHHHHHHHHHHHHHccCCHHHH-HHHHHH
Confidence 3466777777774 5555554421 2234455666677778888887776 344433
No 268
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=71.58 E-value=86 Score=29.05 Aligned_cols=46 Identities=17% Similarity=0.126 Sum_probs=31.3
Q ss_pred hhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 142 ATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFS 188 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~ 188 (318)
+..+++.+++-... |++++.++++........|-..+...+..+++
T Consensus 110 AaEIAYysYIYs~V-d~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs 155 (433)
T KOG3810|consen 110 AAEIAYYSYIYSKV-DPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVS 155 (433)
T ss_pred HHHHhhhheeeeec-CHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhh
Confidence 34666777765555 46777888887767777777777766666554
No 269
>CHL00190 psaM photosystem I subunit XII; Provisional
Probab=70.85 E-value=9.4 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021040 294 IIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+..+.+++.+++.-|+++.+|+
T Consensus 9 iAL~~Al~~~iLA~rLg~~LY~ 30 (30)
T CHL00190 9 IALFLALTTGILAIRLGTALYQ 30 (30)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4557889999999999999995
No 270
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=69.67 E-value=66 Score=31.06 Aligned_cols=45 Identities=7% Similarity=0.099 Sum_probs=32.0
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLS 178 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~ 178 (318)
+.+++..+..+....+.+.+..++++++....+-.+...++-.++
T Consensus 290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii 334 (491)
T PF03219_consen 290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTII 334 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888877766555444443333
No 271
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=69.64 E-value=1e+02 Score=29.21 Aligned_cols=171 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred ccccCCCCCCCCCchhhhhhcccc-hHHHHHHHHHHHHHHHHHHHh-CCCh-----hHHHHHHHHHHHHHHHHhhhhHHH
Q 021040 10 DIENDDSFTQPVGRWSVLYYGSGH-MLNDITAACWFTYLLLFLTDI-GLSP-----RGAAAVMLSGQIADGFATIFIGEL 82 (318)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~-gls~-----~~~g~i~~~~~i~~~i~~p~~G~l 82 (318)
|.++.+..+.+.+.++.+.-.--. +..-+.+.+....+|-+..+. .-+. ...-+...++.++|.++.. ....
T Consensus 251 ~~~~~~~~~~~~~~~~v~kki~~~~~~vf~~F~vTL~vFPgv~~~i~~~~~~~~~~~~~~i~~~~fNvgD~vGR~-~~~~ 329 (437)
T TIGR00939 251 ESPDEPQKPLKTSVWVVFTKVWLLAFSVVFVFTVTLSVFPAITTAVTSSGLGLSNWFYPIICFLLFNLFDWLGRS-LTSK 329 (437)
T ss_pred cCCccchhcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEEeeccCCCCCccHHHHHHHHHHHHHHHHHhh-hhhe
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHhCCCCCC-------cccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccc
Q 021040 83 IDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPC-------RILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCIT 155 (318)
Q Consensus 83 sDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (318)
...-++|..++.+..+.=.+...+.+. |.-. .+.++ ..+.+..+++++..|-.........++..
T Consensus 330 ~~~p~~~~~~l~i~s~~R~iFIPlf~l-cn~~~~~~~p~~~~~d-------~~~~~~~~l~gltnGy~~s~~m~~~p~~v 401 (437)
T TIGR00939 330 FMWPDEDSRWLPILSFLRVLFIPLFLL-CNYPQRSRLPVFFPGD-------AYFIILMLLFGFSNGYLGSLSMCLAPRQV 401 (437)
T ss_pred eEeeCCCccchHHHHHHHHHHHHHHHH-hcCCccccCCeeeccc-------HHHHHHHHHHHHhhhHHHHHHHHhcCCCC
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 156 LNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 156 ~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
+++||..+..+...+..+|-.+|+.++..+...+
T Consensus 402 -~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~~~l 435 (437)
T TIGR00939 402 -DPHEREVAGALMVIFLLVGLALGAVLSFLFVAIL 435 (437)
T ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
No 272
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=68.54 E-value=1.2e+02 Score=29.47 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040 130 CVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (318)
Q Consensus 130 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (318)
++..++.++......++..+.-+.++ ||.--|+.+...+..+|+|+-
T Consensus 409 I~~~~l~sf~stvmFVai~AFharIS-DP~IGGTYMTLLNTvSNLGGt 455 (544)
T PF13000_consen 409 IIQHVLSSFMSTVMFVAIMAFHARIS-DPAIGGTYMTLLNTVSNLGGT 455 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc-CcccchHHHHHHHHHHhcCCC
Confidence 33334556666666667777777765 567788889998888888854
No 273
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=66.62 E-value=49 Score=24.33 Aligned_cols=33 Identities=9% Similarity=0.001 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH
Q 021040 60 GAAAVMLSGQIADGFATIFIGELIDRFGHFKIW 92 (318)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~ 92 (318)
..+.......+...++.++.|.+.|+.|.+..+
T Consensus 88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 120 (141)
T TIGR00880 88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPF 120 (141)
T ss_pred HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHH
Confidence 344555556666667777777777776665554
No 274
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=65.69 E-value=1.3e+02 Score=28.91 Aligned_cols=50 Identities=8% Similarity=0.117 Sum_probs=36.6
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIA 183 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~ 183 (318)
+.+++..+..+..+...+.+..|++++|+...+-.+...++..++...++
T Consensus 274 i~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~ 323 (472)
T TIGR00769 274 IAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLS 323 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677778888888888888888889998888877666665554444433
No 275
>TIGR03053 PS_I_psaM photosystem I reaction center subunit XII. Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction center. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen. The seed alignment for this model includes sequences from Pfam model pfam07465 and additional sequences, as from Prochlorococcus.
Probab=63.87 E-value=16 Score=20.25 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021040 294 IIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+..+.+++.+++.-|+++.+|+
T Consensus 8 iaL~~Al~~~iLA~rLg~~Ly~ 29 (29)
T TIGR03053 8 IALVIALIAGILALRLGKELYR 29 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999985
No 276
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=60.76 E-value=1.6e+02 Score=28.38 Aligned_cols=216 Identities=12% Similarity=0.025 Sum_probs=104.8
Q ss_pred HHHHHHH-h---CCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC-CCCCCc-ccCc
Q 021040 47 LLLFLTD-I---GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG-GCMPCR-ILST 119 (318)
Q Consensus 47 l~~~l~~-~---gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~-~~~~~~-~~~~ 119 (318)
+..-++| + ...+..++.+=+..-+ ...+..++.+.++++.-|++.+-. -...+...+. +|. --.|.. ..+.
T Consensus 45 ~lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~-~~~~F~~fF~-LFa~Vi~P~~~~~hp 122 (509)
T COG3202 45 LLRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYI-ILGFFLGFFA-LFAFVIYPYKDILHP 122 (509)
T ss_pred HHHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHH-HHHHHHHHHH-HHHHHHhccccccCC
Confidence 3444455 2 3556677777655555 567888999999999998887533 2222222222 111 001111 0000
Q ss_pred c----------------------chhHHHHHHHHHHHHHHHHHhhhH-HhHhhhccccccCccchhHHHHHHHHHHHHHH
Q 021040 120 S----------------------TLKVETISYCVFAAIFNVGWAATQ-VAHMSMVNCITLNSTSRVVLTSCRNAFTMVAN 176 (318)
Q Consensus 120 ~----------------------~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~ 176 (318)
. +.| ....+ .+....-.+.+. --......|++. .+|-.+..+..+.+++++.
T Consensus 123 ~~~~~~~~~~~~p~~l~~~ili~~~W-s~s~~---Yi~aELWgslV~S~lFw~faNeitt-~~eakRFy~lf~l~~ni~l 197 (509)
T COG3202 123 DPEFSRDLFADLPMFLKWFILIVGEW-SYSLF---YIMAELWGSLVLSLLFWQFANEITT-IEEAKRFYPLFGLGANISL 197 (509)
T ss_pred CHHHHHHHHhhCCccceeeeEeecch-HHHHH---HHHHHHHHHHHHHHHHHHHHHHhhh-HHHhhhhHHHHHHHHHHHH
Confidence 0 011 11111 111111111111 123456667764 4666778888888888887
Q ss_pred HHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccc---cccc---c-----cccCCCCchHHHHHH
Q 021040 177 LSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTE---EPRL---K-----MGLRGNSHARISWAY 245 (318)
Q Consensus 177 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~---e~~~---~-----~~~~~~~~~~~~~~~ 245 (318)
++++.+...+................+..+.+.++.++++..+..+.-| +.+. + ++++.+.+..++++.
T Consensus 198 llsg~~~~~~~k~~~~~~~~~~~~~~~~~~~vi~~~~~i~~~l~~~~~r~il~~~~f~~~~~~kk~~~k~k~~~~~s~k~ 277 (509)
T COG3202 198 LLSGEVTSWLSKHRDALASEFKDLLLQILFIVIVILGIIAILLYRYINRNVLTDPLFYLRAKKKKKKKKLKLGLIESFKM 277 (509)
T ss_pred HHHHHHHHHHhhchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhHHHhcccccccccCcHHHHHHH
Confidence 7665443332211000000000112344445555555555444432212 2111 1 011223456788999
Q ss_pred HHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 246 WFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
+.|+|-++.+.+.-.+.....+..
T Consensus 278 i~~SkyL~~ial~vl~Y~v~inLv 301 (509)
T COG3202 278 ILRSKYLGAIALLVLAYGVSINLV 301 (509)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHH
Confidence 999998877776666666555533
No 277
>PF07465 PsaM: Photosystem I protein M (PsaM); InterPro: IPR010010 Members of this protein family are PsaM, which is subunit XII of the photosystem I reaction centre. PsaM forms part of the photosystem I complex and its binding is stabilised by PsaI []. This protein is found in both the Cyanobacteria and the chloroplasts of plants, but is absent from non-oxygenic photosynthetic bacteria such as Rhodobacter sphaeroides. Species that contain photosystem I also contain photosystem II, which splits water and releases molecular oxygen.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0030094 plasma membrane-derived photosystem I; PDB: 3PCQ_M 1JB0_M.
Probab=60.36 E-value=22 Score=19.65 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021040 294 IIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+..+.+++.+++.-|+++.+|.
T Consensus 8 iAL~~Al~~~iLA~rLg~~LY~ 29 (29)
T PF07465_consen 8 IALVIALITGILALRLGKELYK 29 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999984
No 278
>PRK11878 psaM photosystem I reaction center subunit XII; Reviewed
Probab=59.88 E-value=20 Score=20.60 Aligned_cols=22 Identities=14% Similarity=0.345 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021040 294 IIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+..+.+++.+++.-|+++.+|+
T Consensus 12 iaL~~Al~~giLA~RLG~~Ly~ 33 (34)
T PRK11878 12 VALVVALHAGVLALRLGTSLYR 33 (34)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 5567889999999999999996
No 279
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=58.59 E-value=41 Score=31.35 Aligned_cols=80 Identities=16% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH
Q 021040 14 DDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW 92 (318)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~ 92 (318)
.|+.++.+.++..+..-.|.+......-++..-..+|+.++ |-|-..++.--.+-.....+..|+.|-..|+..|+|..
T Consensus 17 ~~~~~~~~ls~~~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi 96 (503)
T KOG2601|consen 17 GEGSAEGLLSSTVIFLYLGYFLTTWGDRMWEFSVSLFMILLGGNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVI 96 (503)
T ss_pred ccccccccccceeehhhHHHHHhHhhHhHHHHHHHHHHHHHcCceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHH
Confidence 44444555444444444444443444445656678899998 65655555555555666778899999999999998874
Q ss_pred H
Q 021040 93 H 93 (318)
Q Consensus 93 l 93 (318)
.
T Consensus 97 ~ 97 (503)
T KOG2601|consen 97 Q 97 (503)
T ss_pred H
Confidence 3
No 280
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=58.09 E-value=67 Score=23.04 Aligned_cols=74 Identities=4% Similarity=0.089 Sum_probs=45.1
Q ss_pred HHHHHhcHH--HHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhH-HHHHHHHHHHHHHHHHHHHHHhhhhc
Q 021040 243 WAYWFKKIL--YYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKAL-VPAIIYICSFIVSILLQVISLKLYSM 316 (318)
Q Consensus 243 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~-~~~~~~v~~~i~~~~~~~i~~~~~~~ 316 (318)
++++.|.|+ -+.+....+..++++.....+.|..+.....-+....+. +...+++.+.+.+.+.-+..++-+|.
T Consensus 7 f~~L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~ 83 (91)
T PF04341_consen 7 FQELVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWLYVRRANREFDP 83 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHccccCH
Confidence 445544433 444556666677777778888888877654422333433 44556667777777777777776663
No 281
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=58.05 E-value=1.7e+02 Score=27.56 Aligned_cols=49 Identities=8% Similarity=-0.073 Sum_probs=32.4
Q ss_pred HHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 137 NVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
|+..++..+.....+.+..+ +++|.-..+....+..+|..+++.++.++
T Consensus 346 GLlGGa~YVNtF~~I~~~~~-~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 346 GLLGGASYVNTFYRISEEVP-PEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHhhhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44344444444445555443 57899999999999999988877765443
No 282
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=55.39 E-value=73 Score=30.49 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=27.7
Q ss_pred HHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc
Q 021040 49 LFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFG 87 (318)
Q Consensus 49 ~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G 87 (318)
+|..+. |.+..+.-+...+......++..++|.++||+.
T Consensus 272 ~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggiisd~~~ 311 (493)
T KOG1330|consen 272 YYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGIISDKLS 311 (493)
T ss_pred HHHHHHhCCccccchhhhhHHHhhchhhheehHHHHHHHH
Confidence 344444 655555556667777888899999999999743
No 283
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=54.70 E-value=54 Score=33.27 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=42.8
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhc
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRF 86 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~ 86 (318)
...++............+|+|-|+.++ |.+++.+..+.....+ +.+++..++|++..|+
T Consensus 396 ~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkf 456 (735)
T KOG3626|consen 396 LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKF 456 (735)
T ss_pred HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeee
Confidence 334444444555556678999999886 9999999998855544 4557888889999864
No 284
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=53.62 E-value=55 Score=20.84 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=16.2
Q ss_pred HHHHHHHhhhhHHHhhh-ccCchHHH
Q 021040 69 QIADGFATIFIGELIDR-FGHFKIWH 93 (318)
Q Consensus 69 ~i~~~i~~p~~G~lsDr-~Grr~~~l 93 (318)
.....+.....|+..|| +|.++.++
T Consensus 10 ~~~~i~~g~~~G~~lD~~~~t~p~~~ 35 (55)
T PF09527_consen 10 MAAPILVGFFLGYWLDKWFGTSPWFT 35 (55)
T ss_pred HHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 34455667789999995 77744333
No 285
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=52.16 E-value=92 Score=25.68 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcc
Q 021040 294 IIYICSFIVSILLQVISLKLYSMH 317 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~~~ 317 (318)
+..+.+++++.+...+++|++..|
T Consensus 160 ~~~~~~~v~a~lG~~lG~kllkKH 183 (186)
T PF09605_consen 160 IIIIITFVGALLGALLGKKLLKKH 183 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455566666666666666555
No 286
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=51.08 E-value=14 Score=35.45 Aligned_cols=47 Identities=9% Similarity=0.041 Sum_probs=29.0
Q ss_pred HHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 135 IFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 135 l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
+++.+......+..++.+++.. +++++.+.+..+.....+..+++.+
T Consensus 397 ~~g~~~P~~~~~~~tlySkiLg-p~~q~~~qg~~~~~~s~~~~~~~~~ 443 (488)
T KOG2325|consen 397 VFGIAFPFISTALDTLYSKILG-PRDQGTMQGVFSISGSIARVVGPIF 443 (488)
T ss_pred eeccccccccchHHHHHHHHhC-CccccceeEEEEeccchhhhhhHHH
Confidence 3555556566667778888765 4666666666555555555555443
No 287
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=49.33 E-value=1e+02 Score=30.00 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 021040 295 IYICSFIVSILLQVISLKL 313 (318)
Q Consensus 295 ~~v~~~i~~~~~~~i~~~~ 313 (318)
..+++.++|+...|+-+.+
T Consensus 306 y~~~~~iaGy~S~~~yk~~ 324 (521)
T PF02990_consen 306 YALTSFIAGYVSARLYKSF 324 (521)
T ss_pred HHHHhhHHHHHHHHHHHHc
Confidence 3356777777777766543
No 288
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=45.70 E-value=61 Score=25.86 Aligned_cols=38 Identities=5% Similarity=-0.038 Sum_probs=25.0
Q ss_pred HHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHH
Q 021040 138 VGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANL 177 (318)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~ 177 (318)
+|.+.....|..+.+. .|+++.|+..|+-.+-.|++-+
T Consensus 107 Fg~gllGisYGilSaS--WD~~r~GSllG~~e~~~N~~r~ 144 (153)
T PF11947_consen 107 FGLGLLGISYGILSAS--WDPEREGSLLGWEEFKRNWGRM 144 (153)
T ss_pred HHHHHHhhhhhhcccc--cCCCCCCCcccHHHHHHhHHHH
Confidence 3444445555555543 4677789999998888887654
No 289
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=45.64 E-value=2.9e+02 Score=26.74 Aligned_cols=42 Identities=10% Similarity=0.018 Sum_probs=31.1
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVA 175 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g 175 (318)
..++++.+....++.+-+.+..++.+++...++-.+...++-
T Consensus 292 l~Y~v~inLvE~~wKs~ik~~~~~~~~~~~f~~~~~~~tgvv 333 (509)
T COG3202 292 LAYGVSINLVEGVWKSGIKELYPTTNEYTAFMGRFQIWTGVV 333 (509)
T ss_pred HHHHHHHHHHHHHHHHhHHHhcCChhHHHHHHHHHHHHHHHH
Confidence 356788888888888888888887777877777665544433
No 290
>PRK11469 hypothetical protein; Provisional
Probab=45.05 E-value=1.8e+02 Score=24.09 Aligned_cols=79 Identities=10% Similarity=0.107 Sum_probs=38.4
Q ss_pred CCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhh-hhHHHhhhccCchHHHHHHH
Q 021040 19 QPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATI-FIGELIDRFGHFKIWHGAGS 97 (318)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p-~~G~lsDr~Grr~~~l~~g~ 97 (318)
++.+.++.+..+++.=.+.+....-..+ .|.+.-....+..+..+....... +..++.+++|||-. +..|.
T Consensus 101 ~~~~~~~~l~LaiAtSiDAlavGi~~~~-------~g~~~~~~~~~ig~~s~~~~~~G~~lG~~~g~~~g~~a~-~lgG~ 172 (188)
T PRK11469 101 RRHGFWLLVTTAIATSLDAMAVGVGLAF-------LQVNIIATALAIGCATLIMSTLGMMVGRFIGSIIGKKAE-ILGGL 172 (188)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHH-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 3455667766666532222221111111 134444444444444444444444 33345557777655 56677
Q ss_pred HHHHHHHH
Q 021040 98 VLVAVSFS 105 (318)
Q Consensus 98 ~~~~i~~~ 105 (318)
++..++.-
T Consensus 173 iLI~iGi~ 180 (188)
T PRK11469 173 VLIGIGVQ 180 (188)
T ss_pred HHHHHHHH
Confidence 77777754
No 291
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=42.94 E-value=2.9e+02 Score=26.02 Aligned_cols=37 Identities=11% Similarity=0.104 Sum_probs=29.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKI 91 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~ 91 (318)
+-+...-|.+-++..+..++.....|++..+|.+-..
T Consensus 281 ~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~ 317 (412)
T PF01770_consen 281 DNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGE 317 (412)
T ss_pred CCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHH
Confidence 3445678899999999999999999999777766443
No 292
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=41.46 E-value=8.8 Score=37.50 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=0.0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHH-HHHHHhhhhHHHhhhcc
Q 021040 29 YGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQI-ADGFATIFIGELIDRFG 87 (318)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i-~~~i~~p~~G~lsDr~G 87 (318)
..++..........+.+|+|-|++.. ++++++++++..+..+ ..+++..++|++..|+.
T Consensus 310 ~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~k 370 (539)
T PF03137_consen 310 LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFK 370 (539)
T ss_dssp -------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEec
Confidence 33444444455556678999999876 9999999988866655 56688999999999764
No 293
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=41.35 E-value=69 Score=18.28 Aligned_cols=28 Identities=21% Similarity=0.222 Sum_probs=18.5
Q ss_pred hhHHHHH----HHHHHHHHHHHhhhhHHHhhh
Q 021040 58 PRGAAAV----MLSGQIADGFATIFIGELIDR 85 (318)
Q Consensus 58 ~~~~g~i----~~~~~i~~~i~~p~~G~lsDr 85 (318)
.+|.|++ ++...++..+.+.+.|++-+|
T Consensus 3 Laqlg~~~WhDLAAP~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 3 LAQLGIAFWHDLAAPIIAGIIASLIVGWLRNR 34 (35)
T ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHhc
Confidence 4455555 456667777777888877665
No 294
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=41.24 E-value=1.2e+02 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=16.0
Q ss_pred HHHHHHHhhhhHHHhh-hccCchHH
Q 021040 69 QIADGFATIFIGELID-RFGHFKIW 92 (318)
Q Consensus 69 ~i~~~i~~p~~G~lsD-r~Grr~~~ 92 (318)
.+...+...+.|.+-| |+|.+..|
T Consensus 52 ~v~pil~G~~lG~WLD~~~~t~~~~ 76 (100)
T TIGR02230 52 VAIPTLLGVAVGIWLDRHYPSPFSW 76 (100)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcHH
Confidence 3444566778899999 57765444
No 295
>PRK11375 allantoin permease; Provisional
Probab=40.62 E-value=85 Score=30.22 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=38.0
Q ss_pred cccccCCCCCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 021040 9 YDIENDDSFTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (318)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr 85 (318)
+.|+|+++-+++-|.|+...+..--++.......+. ...-.+ ..|++..|.=+...++.+...+..-+.|...-|
T Consensus 12 ~~n~dl~pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~-~~g~~l-~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~ 86 (484)
T PRK11375 12 GYSEDLLPKTQSQRTWKTFNYFTLWMGSVHNVPNYV-MVGGFF-ILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSK 86 (484)
T ss_pred CcCCCCCcCCccccCCcHHHHHHHHHHHhccHHHHH-HHHHHH-HccchHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 677777777766654554433333222222111110 111111 248888777777766666555555555555553
No 296
>PF11872 DUF3392: Protein of unknown function (DUF3392); InterPro: IPR021813 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.
Probab=39.22 E-value=1.3e+02 Score=22.44 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHh--CCChhHHHHHHHHHHHHHHHHhhhhHHHhhh
Q 021040 34 MLNDITAACWFTYLLLFLTDI--GLSPRGAAAVMLSGQIADGFATIFIGELIDR 85 (318)
Q Consensus 34 ~~~~~~~~~~~~~l~~~l~~~--gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr 85 (318)
..+...+.....+++|++.+. +++....+.++.... .+.|.++||
T Consensus 59 licAFGYGll~v~~tP~l~~~L~~~~~~~l~~~vl~~F-------~~iG~lAqR 105 (106)
T PF11872_consen 59 LICAFGYGLLIVWLTPLLARQLAQLPNYWLAPVVLLSF-------ILIGVLAQR 105 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHH-------HHHHHHhcc
Confidence 344555666667788888874 788777766654333 357788876
No 297
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=38.56 E-value=2.8e+02 Score=25.57 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHH
Q 021040 55 GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGS 97 (318)
Q Consensus 55 gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~ 97 (318)
++--+.+|.++..+.+++++++.+.|.|+.+.||-.+. ..|.
T Consensus 306 ~~Gv~~igf~m~cfgv~~Av~S~~~g~L~~~~gr~~~~-v~ga 347 (390)
T KOG3097|consen 306 ALGVSRIGFAMACFGVGDAVASSLFGLLGKWIGRPPLL-VLGA 347 (390)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccHH-HHHH
Confidence 56677899999999999999999999999999997664 3443
No 298
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=38.09 E-value=3.9e+02 Score=26.01 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=31.5
Q ss_pred HHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccC
Q 021040 44 FTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGH 88 (318)
Q Consensus 44 ~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Gr 88 (318)
..|......++ +-++..-|.+-++..+..++.+...|++-.+|.|
T Consensus 282 ~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~~~~~w~~ 327 (511)
T TIGR00806 282 TYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGFVNIRWAR 327 (511)
T ss_pred HHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 34444444444 3223377888899999999999999999877743
No 299
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=37.79 E-value=2.2e+02 Score=26.89 Aligned_cols=129 Identities=16% Similarity=0.067 Sum_probs=62.0
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhh------hccCchHHHHHHHHHHHHHHHHHhCCCCCCcccC-c
Q 021040 47 LLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELID------RFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILS-T 119 (318)
Q Consensus 47 l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsD------r~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~-~ 119 (318)
-+.-+.|.|+++...+++.....-...+.....|.++. ++-|+-++ .++.... .....|+ .|. +.. .
T Consensus 288 t~LkLle~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~-R~~~~~~--~t~Lv~~--~~~-~~~~~ 361 (510)
T KOG3574|consen 288 TSLKLLEHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPY-RLGGGLV--QTALVWW--TPT-LGHSD 361 (510)
T ss_pred cchHHHHcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhH-HHHHHHH--HHHHHhh--hcc-cccCC
Confidence 35556677999998887764433344444444554443 23333332 2222222 2222332 111 111 1
Q ss_pred cch-hHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHH
Q 021040 120 STL-KVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAI 182 (318)
Q Consensus 120 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~ 182 (318)
... ....+..+....+.+.......+...+.-+.++ |+.-.++.+++.+..+++|+.--..+
T Consensus 362 G~~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqis-dp~iggTymTlLNTLsnLGg~wp~tv 424 (510)
T KOG3574|consen 362 GTFPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQIS-DPAIGGTYMTLLNTLSNLGGNWPGTV 424 (510)
T ss_pred CceeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcC-CcccCccHHHHHHHHHHhcCCcHHHH
Confidence 111 111111111123344444444445556666665 46778888888888888886543333
No 300
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=35.76 E-value=3.5e+02 Score=25.26 Aligned_cols=72 Identities=18% Similarity=0.176 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHH-HHHHHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHH
Q 021040 58 PRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHG-AGSVLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIF 136 (318)
Q Consensus 58 ~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~-~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (318)
...-|.+=++..+..++++.+.|++--+|.|..-.++ .+++..+... .+ ...+..++.....|+++..++
T Consensus 270 ~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agll--f~-------m~~t~~Iw~~Ya~yvlfr~~y 340 (433)
T KOG3810|consen 270 NVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLL--FI-------MAQTQHIWVCYAGYVLFRVIY 340 (433)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhh--hh-------hhcccceehhhhhHHHHHhhH
Confidence 3456677788888899999999999887777644333 3333222221 11 123344666666676654444
Q ss_pred HH
Q 021040 137 NV 138 (318)
Q Consensus 137 ~~ 138 (318)
++
T Consensus 341 ~l 342 (433)
T KOG3810|consen 341 QL 342 (433)
T ss_pred hh
Confidence 43
No 301
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=33.56 E-value=2.7e+02 Score=22.94 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 021040 296 YICSFIVSILLQVISLKLYSMH 317 (318)
Q Consensus 296 ~v~~~i~~~~~~~i~~~~~~~~ 317 (318)
.+..++++++...+++|+...|
T Consensus 165 ~~~t~v~~~iG~~iG~kllkKH 186 (189)
T TIGR02185 165 IVLTAVAGIAGVLIGKKLLKKH 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555555
No 302
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.75 E-value=1.5e+02 Score=22.10 Aligned_cols=31 Identities=26% Similarity=0.280 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhHHHhhhccCchHHH
Q 021040 63 AVMLSGQIADGFATIFIGELIDRFGHFKIWH 93 (318)
Q Consensus 63 ~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l 93 (318)
.-++.-.+...+.....|++-||+=.-+||-
T Consensus 46 ~klssefIsGilVGa~iG~llD~~agTsPwg 76 (116)
T COG5336 46 FKLSSEFISGILVGAGIGWLLDKFAGTSPWG 76 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 3344555666677788999999976556763
No 303
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=31.97 E-value=4.1e+02 Score=24.49 Aligned_cols=76 Identities=18% Similarity=0.309 Sum_probs=41.5
Q ss_pred ccchHHHHHHHHHHHHHHHHHH-H---hCCChhHHHHHHHHHH-HHHHHHhhhhHHHhh----hc--cCchHHHHHHHHH
Q 021040 31 SGHMLNDITAACWFTYLLLFLT-D---IGLSPRGAAAVMLSGQ-IADGFATIFIGELID----RF--GHFKIWHGAGSVL 99 (318)
Q Consensus 31 ~~~~~~~~~~~~~~~~l~~~l~-~---~gls~~~~g~i~~~~~-i~~~i~~p~~G~lsD----r~--Grr~~~l~~g~~~ 99 (318)
+|.+...+..++..+-+=-|+. | .|.++...+-.+.... +.+.+.....|.++| +. |++-|+.. +...
T Consensus 126 ~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~-a~~~ 204 (354)
T PF05631_consen 126 LGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDA-AIVL 204 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHH-HHHH
Confidence 3444444444444443333443 2 3888888777766555 455555555555554 44 56888754 4444
Q ss_pred HHHHHHHH
Q 021040 100 VAVSFSSV 107 (318)
Q Consensus 100 ~~i~~~~~ 107 (318)
.+++...+
T Consensus 205 l~~~~~~I 212 (354)
T PF05631_consen 205 LAVAAVLI 212 (354)
T ss_pred HHHHHHHH
Confidence 45554433
No 304
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=31.10 E-value=2.2e+02 Score=26.89 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=23.4
Q ss_pred hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhcc
Q 021040 54 IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFG 87 (318)
Q Consensus 54 ~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~G 87 (318)
.|++..|.=+...++.+...+..-+.|...-|.|
T Consensus 42 ~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~G 75 (442)
T TIGR00800 42 LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYG 75 (442)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhC
Confidence 4788888777777777666666666666666644
No 305
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=30.61 E-value=3.5e+02 Score=23.28 Aligned_cols=23 Identities=17% Similarity=0.272 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 021040 294 IIYICSFIVSILLQVISLKLYSM 316 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~~ 316 (318)
+..+..+......-|.-+++|+.
T Consensus 140 v~~i~~i~~~~~~~K~~k~i~p~ 162 (248)
T PF11368_consen 140 VLLILTIILQKFLRKTIKKIRPE 162 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcc
Confidence 44455555666666666666653
No 306
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.60 E-value=2.6e+02 Score=20.88 Aligned_cols=32 Identities=3% Similarity=-0.105 Sum_probs=14.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 159 TSRVVLTSCRNAFTMVANLSLYAIAFIVFSVS 190 (318)
Q Consensus 159 ~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 190 (318)
++++.+..+.-..-.+++++.+...+.++..+
T Consensus 38 s~k~~~~a~klssefIsGilVGa~iG~llD~~ 69 (116)
T COG5336 38 SIKGYAQAFKLSSEFISGILVGAGIGWLLDKF 69 (116)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555544444444433333334555543
No 307
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=27.47 E-value=1.5e+02 Score=19.29 Aligned_cols=6 Identities=0% Similarity=0.556 Sum_probs=2.5
Q ss_pred HHHHHH
Q 021040 48 LLFLTD 53 (318)
Q Consensus 48 ~~~l~~ 53 (318)
..++.|
T Consensus 43 ~VWm~Q 48 (56)
T PF06796_consen 43 IVWMYQ 48 (56)
T ss_pred HHHHHH
Confidence 344444
No 308
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=27.28 E-value=1.8e+02 Score=27.73 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCCCchhhhhhcccchHHHHHHHHHHHHHHHHHHH--hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHH
Q 021040 17 FTQPVGRWSVLYYGSGHMLNDITAACWFTYLLLFLTD--IGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIW 92 (318)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~--~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~ 92 (318)
.++|++..+.+..++.++...... +.+.|.+.. .++++.+...+.+..-+...++..+--.-..+.|-|-|.
T Consensus 9 ~~~~~~~~~~~~lglQH~lamfg~----~V~VPlivg~a~~l~~~~~~~Lis~~l~~~GiaTllq~~~~~~~g~~lP~ 82 (451)
T COG2233 9 VDERLPLGKLLLLGLQHLLAMFGA----TVLVPLLVGLALGLSAEDTAYLISADLLASGIGTLLQLLGTGPGGSGLPS 82 (451)
T ss_pred ccccCChHHHHHHHHHHHHHHHhc----chHhhHHhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCCCe
Confidence 337788888898998876533332 334555554 399999999888887777776666554422245556663
No 309
>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa. Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....
Probab=25.61 E-value=1.6e+02 Score=19.08 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 021040 290 LVPAIIYICSFIVSILLQVISLKLYSMH 317 (318)
Q Consensus 290 ~~~~~~~v~~~i~~~~~~~i~~~~~~~~ 317 (318)
.....+.+++++.....|...++++|+|
T Consensus 14 ~y~~~i~~gaf~fe~~fd~~~d~~w~~~ 41 (55)
T PF05365_consen 14 TYVLTIFAGAFFFERAFDSATDKIWDSI 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhc
Confidence 3445667888999999999999999876
No 310
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=25.45 E-value=5.3e+02 Score=23.70 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHhhh--ccCch
Q 021040 61 AAAVMLSGQIADGFATIFIGELIDR--FGHFK 90 (318)
Q Consensus 61 ~g~i~~~~~i~~~i~~p~~G~lsDr--~Grr~ 90 (318)
.|.++..--+-..+.....-..-|| +|.|.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri 95 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRI 95 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHH
Confidence 4455544445555666666667786 56653
No 311
>COG3162 Predicted membrane protein [Function unknown]
Probab=25.30 E-value=2.8e+02 Score=20.36 Aligned_cols=74 Identities=7% Similarity=0.136 Sum_probs=34.2
Q ss_pred HHHHHHhcHH-HHH-HHHHHHHHHHHHHHHHHHhHHhhhhccccccchhh-HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 021040 242 SWAYWFKKIL-YYQ-VALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKA-LVPAIIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 242 ~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~-~~~~~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
.++++.|.|+ |-. +.+..+..++++-....|.|.++-.-..-+....+ .+....++.+.+-+-+.-+-..+-||
T Consensus 14 ~f~eLv~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~IYv~rAn~~fD 90 (102)
T COG3162 14 RFRELVRKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGIYVRRANGEFD 90 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHHHhhHhhccch
Confidence 3566666655 433 33445555556556666666555432221111222 23334445555444444444443333
No 312
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.85 E-value=6.5e+02 Score=23.36 Aligned_cols=17 Identities=6% Similarity=-0.080 Sum_probs=10.2
Q ss_pred cccccCccchhHHHHHH
Q 021040 152 NCITLNSTSRVVLTSCR 168 (318)
Q Consensus 152 ~~~~~~~~~R~~~~~~~ 168 (318)
+|..||+++|-.+.-+.
T Consensus 290 pdaHpD~~rry~Aa~~a 306 (402)
T COG3135 290 PDAHPDPARRYTAALVA 306 (402)
T ss_pred CCCCCChHHHHHHHHHH
Confidence 56667777775554433
No 313
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=21.34 E-value=6.9e+02 Score=23.47 Aligned_cols=37 Identities=11% Similarity=0.097 Sum_probs=21.3
Q ss_pred ccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 151 VNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVF 187 (318)
Q Consensus 151 ~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~ 187 (318)
++++-+...+|..+.+.....+.+|.++-+-+...+.
T Consensus 122 iP~M~k~GY~~~~A~av~aasgtlG~liPPsi~~ii~ 158 (416)
T PF06808_consen 122 IPEMKKAGYPPEFAAAVIAASGTLGQLIPPSIGMIIY 158 (416)
T ss_pred HHHHHHcCCCHHHhHHHHhhccccchhcchHHHHHHH
Confidence 3455433345666777777777777776555443333
No 314
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=21.27 E-value=6.6e+02 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 021040 296 YICSFIVSILLQVISLKLY 314 (318)
Q Consensus 296 ~v~~~i~~~~~~~i~~~~~ 314 (318)
++.+++++.+...+.||+.
T Consensus 250 f~~ami~g~ivrn~~~~~~ 268 (368)
T PF03616_consen 250 FVGAMIVGIIVRNILDKTG 268 (368)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 4556666666666666543
No 315
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=20.98 E-value=38 Score=30.29 Aligned_cols=47 Identities=11% Similarity=-0.050 Sum_probs=1.6
Q ss_pred HHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 134 AIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
+++++..|-.........++..+ ++||..+..+.......|-.+|..
T Consensus 256 ~l~g~TNGyl~tl~m~~~p~~v~-~~e~e~aG~~~~~~L~~Gl~~Gs~ 302 (309)
T PF01733_consen 256 LLFGFTNGYLSTLAMMYAPKSVS-PEERELAGSVMSFFLSFGLFIGSV 302 (309)
T ss_dssp -----------HHHH---------------------------------
T ss_pred HHHHHccchhhhceeeeCCCcCC-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444434444455554 577777766655555555544433
No 316
>PF04226 Transgly_assoc: Transglycosylase associated protein; InterPro: IPR007341 This bacterial protein is predicted to be an integral membrane protein. Some family members have been annotated as transglycosylase-associated proteins, but no experimental evidence is provided. This family was annotated based on the information in P76011 from SWISSPROT.; GO: 0016021 integral to membrane
Probab=20.17 E-value=2.3e+02 Score=17.55 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 021040 202 YRWIAYSSIFIGCCFVGI 219 (318)
Q Consensus 202 ~~~~~~i~~~~~~l~~~~ 219 (318)
+.+.-++.+.++.+..+.
T Consensus 24 ~~~~~~i~aviGAiill~ 41 (48)
T PF04226_consen 24 GSWGSFIVAVIGAIILLF 41 (48)
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 344444555554444433
Done!