Query 021040
Match_columns 318
No_of_seqs 177 out of 1657
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 11:52:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021040.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021040hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 3.2E-23 1.1E-27 192.8 29.6 280 22-313 24-322 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 2.5E-23 8.6E-28 194.1 17.2 265 27-313 31-315 (451)
3 2gfp_A EMRD, multidrug resista 99.9 8.4E-23 2.9E-27 186.5 17.7 257 30-313 6-262 (375)
4 4aps_A DI-OR tripeptide H+ sym 99.8 1.5E-17 5.3E-22 156.9 28.9 173 25-222 14-195 (491)
5 2cfq_A Lactose permease; trans 99.7 2.7E-18 9.4E-23 159.4 8.8 270 23-312 6-289 (417)
6 4gc0_A D-xylose-proton symport 99.6 7.2E-14 2.5E-18 131.6 20.9 161 57-228 53-224 (491)
7 2xut_A Proton/peptide symporte 99.5 3.4E-13 1.2E-17 128.2 18.5 171 27-221 15-196 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 8.6E-11 3E-15 108.9 17.7 175 25-222 253-432 (451)
9 2cfq_A Lactose permease; trans 99.1 2E-09 6.9E-14 99.4 16.6 163 42-229 238-405 (417)
10 3o7q_A L-fucose-proton symport 99.1 6.5E-09 2.2E-13 95.9 18.1 143 28-188 262-406 (438)
11 4gc0_A D-xylose-proton symport 99.0 4E-09 1.4E-13 99.0 15.7 171 45-230 298-469 (491)
12 4aps_A DI-OR tripeptide H+ sym 98.9 2.4E-09 8.3E-14 100.6 7.6 170 40-227 299-475 (491)
13 2gfp_A EMRD, multidrug resista 98.3 2.4E-07 8.2E-12 83.7 2.4 144 28-185 203-348 (375)
14 2xut_A Proton/peptide symporte 98.1 6.5E-06 2.2E-10 77.7 8.8 120 60-186 336-464 (524)
15 1jb0_M Photosystem 1 reaction 66.6 8.4 0.00029 20.9 3.4 22 294-315 10-31 (31)
16 2g9p_A Antimicrobial peptide l 35.5 14 0.00046 18.3 0.9 13 78-90 2-14 (26)
17 2yvc_D Neprilysin; protein-pep 29.4 18 0.0006 18.0 0.7 10 9-18 7-16 (26)
18 1pp9_J Ubiquinol-cytochrome C 27.4 84 0.0029 20.0 3.8 30 289-318 18-47 (62)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=3.2e-23 Score=192.81 Aligned_cols=280 Identities=11% Similarity=-0.032 Sum_probs=194.6
Q ss_pred CchhhhhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 22 GRWSVLYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
+++..+...+..+..........+.++.+.++.|++..++|++.++..+...+++|+.|.++||+||||. +..+.++.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~-l~~~~~~~~ 102 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAG-IITGLFLYA 102 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHH-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHH-HHHHHHHHH
Confidence 3444455555556666666667777777666779999999999999999999999999999999999998 567888777
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++....+. . ...+ +.+... +.+++.+++.+...++..+++.|..+ +++|+++.++.+.+..+|.++++.
T Consensus 103 ~~~~~~~~--~--~~~~--~~~~l~----~~~~l~G~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~ 171 (438)
T 3o7q_A 103 LGAALFWP--A--AEIM--NYTLFL----VGLFIIAAGLGCLETAANPFVTVLGP-ESSGHFRLNLAQTFNSFGAIIAVV 171 (438)
T ss_dssp HHHHHHHH--H--HHTT--CHHHHH----HHHHHHHHHHHHHHHHHHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--c--cccc--cHHHHH----HHHHHHHhhHHHhhhhHHHHHHHHcC-chhHHHHHHHHHHHHHHHHHHHHH
Confidence 77654421 0 0111 223222 22356778888888888899999886 578999999999999999998887
Q ss_pred HHHHHHHhhccCcc----------------cchhHHHHHHHHHHHHHHHHHHHHHHh-ccccccccc-ccCCCCchHHHH
Q 021040 182 IAFIVFSVSTAKTH----------------ADLENQYRWIAYSSIFIGCCFVGIFLS-RTEEPRLKM-GLRGNSHARISW 243 (318)
Q Consensus 182 ~~~~l~~~~~~~~~----------------~~~~~~~~~~~~i~~~~~~l~~~~~~~-~~~e~~~~~-~~~~~~~~~~~~ 243 (318)
+++.+......... .+...+|+|.+++.+++..+..++..+ ..||+++++ +++++.+.++.+
T Consensus 172 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 251 (438)
T 3o7q_A 172 FGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASL 251 (438)
T ss_dssp HTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSSTTSHHHHH
T ss_pred HHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccchhhhH
Confidence 76665522110000 000123888887766665555544433 234443322 222344566788
Q ss_pred HHHHhcHHHHHHHHHHHHHHHHHHHHHHHhHHh-hhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 244 AYWFKKILYYQVALVYMLTRLVVNVSQAYLAFY-VINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
++++|+|+++...+..++..........++|.| +++.+|.+....+....+..++.+++.++.+++.||+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 252 SRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF 322 (438)
T ss_dssp HHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988888888888889999999 8888899887666555555555666666666666554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.90 E-value=2.5e-23 Score=194.06 Aligned_cols=265 Identities=12% Similarity=0.021 Sum_probs=193.5
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSS 106 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~ 106 (318)
....++.+..........++++.+.++. .+..+.|++.++..+...+++|+.|+++||+||||. +.++.++.+++...
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~-l~~~~~~~~~~~~~ 108 (451)
T 1pw4_A 31 LGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVF-LPAGLILAAAVMLF 108 (451)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHH-HHHHHHHHHHHHHH
Confidence 3444445555555555667777777888 999999999999999999999999999999999987 56788877777654
Q ss_pred HhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 107 VFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
... .+.. .+ +.+...+. +++.+++.+...++..+++.|..+ +++|+++.++.+.+..+|.++++.+++.+
T Consensus 109 ~~~--~~~~-~~--~~~~l~~~----~~l~G~~~~~~~~~~~~~i~~~~~-~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 178 (451)
T 1pw4_A 109 MGF--VPWA-TS--SIAVMFVL----LFLCGWFQGMGWPPCGRTMVHWWS-QKERGGIVSVWNCAHNVGGGIPPLLFLLG 178 (451)
T ss_dssp HHH--CHHH-HS--SSSHHHHH----HHHHHHHHHHTHHHHHHHHHTTCT-TTHHHHHHHHHHHHHHHHHTSHHHHHHHH
T ss_pred HHh--hhhc-cc--cHHHHHHH----HHHHHHHhhhccchHHHHHHHHCC-chhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 1100 11 22222222 345778888888888899999986 57899999999999999988887776655
Q ss_pred HHhhccCcccchhHH-HHHHHHHHHHHHHHHHHHHHhcccccccccc----cC--C------------CCchHH-HHHHH
Q 021040 187 FSVSTAKTHADLENQ-YRWIAYSSIFIGCCFVGIFLSRTEEPRLKMG----LR--G------------NSHARI-SWAYW 246 (318)
Q Consensus 187 ~~~~~~~~~~~~~~~-~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~----~~--~------------~~~~~~-~~~~~ 246 (318)
... .+ |++.+++.++++++..++..+..||++++.+ ++ + +.+.++ ..+++
T Consensus 179 ~~~----------~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (451)
T 1pw4_A 179 MAW----------FNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYV 248 (451)
T ss_dssp HHH----------TCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHT
T ss_pred HHH----------hccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhcccccccchHHHH
Confidence 532 34 8888888887777777776677787643311 00 0 011111 15778
Q ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 247 FKKILYYQVALVYMLTRLVVNVSQAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
+|+|.++...+..++..........++|.|+++.+|.+....+.+..+..++++++.++.+++.||+
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~ 315 (451)
T 1pw4_A 249 LPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV 315 (451)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988889999999999999999887776666666677777777777777775
No 3
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.90 E-value=8.4e-23 Score=186.51 Aligned_cols=257 Identities=12% Similarity=0.039 Sum_probs=190.1
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhC
Q 021040 30 GSGHMLNDITAACWFTYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFG 109 (318)
Q Consensus 30 ~~~~~~~~~~~~~~~~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~ 109 (318)
.++.+..........+.++.+.++.|.|+.+.|++.++..+...+++|+.|+++||+||||.+ ..+.+..+++......
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~-~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 6 VLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVI-LVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCC-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhH-HHHHHHHHHHHHHHHH
Confidence 344455556666777777777777799999999999999999999999999999999999984 5677777776554421
Q ss_pred CCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 110 GCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSV 189 (318)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 189 (318)
.+ +.+.. .+.+++.+++.+...+...+++.|..+ +++|++..+..+....+|..+++.+++.+.+
T Consensus 85 -------~~--~~~~l----~~~~~l~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~- 149 (375)
T 2gfp_A 85 -------TS--SLTVL----IAASAMQGMGTGVGGVMARTLPRDLYE-RTQLRHANSLLNMGILVSPLLAPLIGGLLDT- 149 (375)
T ss_dssp -------HH--HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC-
T ss_pred -------hc--cHHHH----HHHHHHHHHHHHhhhhhHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH-
Confidence 11 12222 223345777888778788889999876 4789999999988888888776555433321
Q ss_pred hccCcccchhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCchHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Q 021040 190 STAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKMGLRGNSHARISWAYWFKKILYYQVALVYMLTRLVVNVS 269 (318)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (318)
..+|++.+++.+++..+..+...+..||++++++ ++++.++++++++|||+++...+..++........
T Consensus 150 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (375)
T 2gfp_A 150 ---------MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA--PRTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAF 218 (375)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC--CCCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------hccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc--ccccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH
Confidence 3578988888777776666555566777654332 22233455678899999999998888888888899
Q ss_pred HHHhHHhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 021040 270 QAYLAFYVINDLRMGQSAKALVPAIIYICSFIVSILLQVISLKL 313 (318)
Q Consensus 270 ~~~~~~yl~~~~g~~~~~~~~~~~~~~v~~~i~~~~~~~i~~~~ 313 (318)
..++|.|+++..|.++...+.+.....++.+++..+.+++.||.
T Consensus 219 ~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 219 EACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp HHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998898877666666666677777777777777764
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.81 E-value=1.5e-17 Score=156.91 Aligned_cols=173 Identities=12% Similarity=-0.079 Sum_probs=125.7
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHH------hCCChhHHHHHHHHHHHHHHHHhhhhHHHhhh-ccCchHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTD------IGLSPRGAAAVMLSGQIADGFATIFIGELIDR-FGHFKIWHGAGS 97 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~------~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr-~Grr~~~l~~g~ 97 (318)
..+...+..+..........+++++|+++ .|++..+.|++.++..+...+++++.|+++|| +||||. +..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~-~~~~~ 92 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPA-VFWGG 92 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHH-HHHHH
Confidence 34444455566666677777888888876 69999999999999999999999999999999 899998 56788
Q ss_pred HHHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccc--hhHHHHHHHHHHHHH
Q 021040 98 VLVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTS--RVVLTSCRNAFTMVA 175 (318)
Q Consensus 98 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--R~~~~~~~~~~~~~g 175 (318)
++.+++...... .++ .....+. .++.+++.+...+...+++.|..++ ++ |+...+..+...++|
T Consensus 93 ~~~~~~~~~~~~-------~~~--~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g 158 (491)
T 4aps_A 93 VLIMLGHIVLAL-------PFG--ASALFGS----IILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLG 158 (491)
T ss_dssp HHHHHHHHHHHS-------CCS--TTHHHHH----HHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------hhh--HHHHHHH----HHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHH
Confidence 877777665432 222 2222222 2456778887777888899998864 55 677778788888888
Q ss_pred HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
..+++.+++.+.. ..+|++.+++.++..++..++..+
T Consensus 159 ~~~~~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 159 AFIAPLIVGAAQE----------AAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHHHHHHHHHHH----------HSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8887776655543 246899888776655555444433
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.74 E-value=2.7e-18 Score=159.38 Aligned_cols=270 Identities=12% Similarity=0.061 Sum_probs=139.9
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHH
Q 021040 23 RWSVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVA 101 (318)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~ 101 (318)
.++.+......+..........++++.|+++. |+|+.++|++.++..+...+++|++|+++||+||||++ .++....+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l-~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYL-LWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHH-HHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHH
Confidence 33444444444444455566678999999885 99999999999999999999999999999999999985 44554433
Q ss_pred HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHH
Q 021040 102 VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYA 181 (318)
Q Consensus 102 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~ 181 (318)
++....+. +.+.+.. .........+.....+.+++.......++.++. +++|+...+..+....+|..+++.
T Consensus 85 ~~~~~~~~----~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~g~~~~~~ 156 (417)
T 2cfq_A 85 VMFAPFFI----FIFGPLL-QYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKV---SRRSNFEFGRARMFGCVGWALGAS 156 (417)
T ss_dssp SCHHHHHH----HTHHHHH-HTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHH---HHHHTCCHHHHSSSTTTHHHHHHH
T ss_pred HHHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHh---hhhcccchHHHHHHHHHHHHHHHH
Confidence 21110100 0000000 000000111000011122222222222222221 123444445444455566665555
Q ss_pred HHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccccccccc--cc----CCCCchHHHHHHHHhcHHHHHH
Q 021040 182 IAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRLKM--GL----RGNSHARISWAYWFKKILYYQV 255 (318)
Q Consensus 182 ~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
+++.+.. .+|++.+++.++.+++..+...+..||+++++ ++ ++++...+++++++|+|+++..
T Consensus 157 l~~~l~~-----------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (417)
T 2cfq_A 157 IVGIMFT-----------INNQFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFSLKLALELFRQPKLWFL 225 (417)
T ss_dssp HHHHHHH-----------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCSSCSSSSSSSCCCCCCHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH-----------hchhHHHHHHHHHHHHHHHHHHHcCcccccccccccccccccccccHHHHHHHhcCCchhhH
Confidence 5444332 35777776655544433333333334432111 11 1111233567788999998877
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhhhccccc---cchhhHHHHHHH----HHHHHHHHHHHHHHHh
Q 021040 256 ALVYMLTRLVVNVSQAYLAFYVINDLRMG---QSAKALVPAIIY----ICSFIVSILLQVISLK 312 (318)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~yl~~~~g~~---~~~~~~~~~~~~----v~~~i~~~~~~~i~~~ 312 (318)
.+..+.....+.....++|.|+.+.++.. ....+....+.. ++.++++.+.||+++|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~ 289 (417)
T 2cfq_A 226 SLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHH
Confidence 76655555555566667888887765532 222233322322 3445555555555444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.60 E-value=7.2e-14 Score=131.58 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=105.2
Q ss_pred ChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc-----------CccchhHH
Q 021040 57 SPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL-----------STSTLKVE 125 (318)
Q Consensus 57 s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~-----------~~~~~~~~ 125 (318)
+.++.|++.+.+.++.+++++++|+++||+|||+. +.++.+++.++.+...+ .+.+.. -..+...
T Consensus 53 ~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~-l~~~~~l~~i~~i~~a~--~~~~~~~~~~~~~~~~~~a~~~~~- 128 (491)
T 4gc0_A 53 ANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDS-LKIAAVLFFISGVGSAW--PELGFTSINPDNTVPVYLAGYVPE- 128 (491)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHH-HHHHHHHHHHHHHHHHC--TTTTTSCSSSSSSCCGGGGGCHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHHHHHH--HhhhhhhhcchhHHHHHHhhhHHH-
Confidence 35678899999999999999999999999999998 56777777777654431 110000 0011222
Q ss_pred HHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHHHH
Q 021040 126 TISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYRWI 205 (318)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 205 (318)
+.+.+++.|++.+...+....++.|..| +++|++..+..+.+...|.+++..++.......... ......|++.
T Consensus 129 ---l~~~R~l~G~g~G~~~~~~~~~i~E~~p-~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 202 (491)
T 4gc0_A 129 ---FVIYRIIGGIGVGLASMLSPMYIAELAP-AHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDAS--WLNTDGWRYM 202 (491)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHTTSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT--TTTTTHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhhCC-HHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccc--cccchhhHHH
Confidence 2334456788888887778889999986 589999999988888888877666544333221100 0012456666
Q ss_pred HHHHHHHHHHHHHHHHhcccccc
Q 021040 206 AYSSIFIGCCFVGIFLSRTEEPR 228 (318)
Q Consensus 206 ~~i~~~~~~l~~~~~~~~~~e~~ 228 (318)
+.+.++..++ .++..++.||++
T Consensus 203 ~~~~~~~~~~-~~~~~~~~peSp 224 (491)
T 4gc0_A 203 FASECIPALL-FLMLLYTVPESP 224 (491)
T ss_dssp HHTTHHHHHH-HHHHGGGSCCCH
T ss_pred hhhhhhhhhh-hhhhhhcCCCCh
Confidence 5554444443 344556788875
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.53 E-value=3.4e-13 Score=128.18 Aligned_cols=171 Identities=12% Similarity=-0.042 Sum_probs=120.8
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHh-C------CChhHHHHHHHHHHHHHHHHhhhhHHHhhhc-cCchHHHHHHHH
Q 021040 27 LYYGSGHMLNDITAACWFTYLLLFLTDI-G------LSPRGAAAVMLSGQIADGFATIFIGELIDRF-GHFKIWHGAGSV 98 (318)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~-g------ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~-Grr~~~l~~g~~ 98 (318)
+...+..+..........+++++|+++. | ++..+.|++.++..+...+++++.|+++||+ ||||. +..+.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~-~~~~~~ 93 (524)
T 2xut_A 15 PYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT-ILWLSL 93 (524)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHH
Confidence 3344455566666677778899999875 8 9999999999999999999999999999999 99998 566777
Q ss_pred HHHHHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHH---HHHHHHHH
Q 021040 99 LVAVSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSC---RNAFTMVA 175 (318)
Q Consensus 99 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~~g 175 (318)
+.+++...... .+ .+.+..++ ..++.+++.+...+...+++.|..+ +++|++..+. .+...++|
T Consensus 94 ~~~~~~~~~~~-------~~-~~~~~~~~----~~~l~g~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~~g 160 (524)
T 2xut_A 94 IYCVGHAFLAI-------FE-HSVQGFYT----GLFLIALGSGGIKPLVSSFMGDQFD-QSNKSLAQKAFDMFYFTINFG 160 (524)
T ss_dssp HHHHHHHHHHH-------TS-SCHHHHHH----HHHHHHHHHHTTHHHHHHHHHHTCS-TTTTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-------hc-ccHHHHHH----HHHHHHHhccccchhHHHHHHHHcC-ccchHHHHHHHHHHHHHHHHH
Confidence 77776654431 11 02222222 2345778888888888899999886 4677655544 77777778
Q ss_pred HHHHHHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 021040 176 NLSLYAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFL 221 (318)
Q Consensus 176 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~ 221 (318)
..+++.+++.+.. ..+|++.+++.+++.++..++..
T Consensus 161 ~~~g~~~~~~l~~----------~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 161 SFFASLSMPLLLK----------NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHTSTHHHH----------TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----------cccHHHHHHHHHHHHHHHHHHHH
Confidence 7776655544432 24688888877766655544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.30 E-value=8.6e-11 Score=108.94 Aligned_cols=175 Identities=8% Similarity=-0.015 Sum_probs=118.6
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhc--cCchHHHHHHHHHHH
Q 021040 25 SVLYYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRF--GHFKIWHGAGSVLVA 101 (318)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~--Grr~~~l~~g~~~~~ 101 (318)
+.+...+..+...........+++.|+++. |.+..+.|++.++..+...++.++.|+++||+ |||+.. ..+..+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~-~~~~~~~~ 331 (451)
T 1pw4_A 253 LLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGAT-GVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH-HHHHHHHH
Confidence 334444555555566666778899999985 99999999999999999999999999999999 998874 44544444
Q ss_pred -HHHHHHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHH-HHHHH
Q 021040 102 -VSFSSVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMV-ANLSL 179 (318)
Q Consensus 102 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~-g~~~~ 179 (318)
++...+.. .++.+..... +..++.+++.+.......++..|..+ +++|+++.++.+....+ |..++
T Consensus 332 ~~~~~~~~~-------~~~~~~~~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~g~~~~ 399 (451)
T 1pw4_A 332 TIATIVYWM-------NPAGNPTVDM----ICMIVIGFLIYGPVMLIGLHALELAP-KKAAGTAAGFTGLFGYLGGSVAA 399 (451)
T ss_dssp HHHHHHTTS-------CCTTCHHHHH----HHHHHHHHHHTHHHHHHHHHHHHTSC-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------hcccCHHHHH----HHHHHHHHHHhchHHHHHHHHHHHhc-hhhhhhHHHHHHHHHHHHHHHHH
Confidence 45443321 1111222111 11234556666666666678888875 47899999999998888 88887
Q ss_pred HHHHHHHHHhhccCcccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 021040 180 YAIAFIVFSVSTAKTHADLENQYRWIAYSSIFIGCCFVGIFLS 222 (318)
Q Consensus 180 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~ 222 (318)
+.+.+.+.+. .+|++.+++.+++.++..++..+
T Consensus 400 ~~~~g~l~~~----------~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 400 SAIVGYTVDF----------FGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHS----------SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh----------cCcHHHHHHHHHHHHHHHHHHHH
Confidence 7776665542 24666666666665555544433
No 9
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.11 E-value=2e-09 Score=99.45 Aligned_cols=163 Identities=11% Similarity=0.039 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHh-C---CChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCccc
Q 021040 42 CWFTYLLLFLTDI-G---LSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRIL 117 (318)
Q Consensus 42 ~~~~~l~~~l~~~-g---ls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~ 117 (318)
.....++.|+.+. + .+..+.|....+..+...++.++.|+++||+||||. +..+.+..++++.... +.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~-l~~~~~~~~~~~~~~~-------~~ 309 (417)
T 2cfq_A 238 VFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNA-LLLAGTIMSVRIIGSS-------FA 309 (417)
T ss_dssp HHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHHHHHT-------TC
T ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHH-HHHHHHHHHHHHHHHH-------Hh
Confidence 3334567777764 3 235567888888888889999999999999999987 4566666666544332 11
Q ss_pred CccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHhhccCccc
Q 021040 118 STSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCR-NAFTMVANLSLYAIAFIVFSVSTAKTHA 196 (318)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-~~~~~~g~~~~~~~~~~l~~~~~~~~~~ 196 (318)
+ +.....+. ..+.+++.+....+...+.+|..| ++.|++..+.. +....+|+.+++.+++.+.+.
T Consensus 310 ~--~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~------- 375 (417)
T 2cfq_A 310 T--SALEVVIL----KTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES------- 375 (417)
T ss_dssp C--SHHHHHHH----TTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-------
T ss_pred c--cHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-------
Confidence 1 12211111 122344444444445667788775 57788877773 666667777776666554432
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Q 021040 197 DLENQYRWIAYSSIFIGCCFVGIFLSRTEEPRL 229 (318)
Q Consensus 197 ~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~~~ 229 (318)
.+++..+.+.++++++..++.+...||+++
T Consensus 376 ---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 376 ---IGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred ---cCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 356667777777767666666666676543
No 10
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.07 E-value=6.5e-09 Score=95.89 Aligned_cols=143 Identities=12% Similarity=0.005 Sum_probs=95.6
Q ss_pred hhcccchHHHHHHHHHHHHHHHH-HHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLF-LTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFS 105 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~-l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~ 105 (318)
...+..+...........+++.| +++. |.+..+.+...++..+...++.++.|+++||+||||. +..+.+..+++..
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~-~~~~~~~~~~~~~ 340 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKV-LAAYALIAMALCL 340 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHH
Confidence 33344444455555666888999 8887 9999999999999999999999999999999999988 4566666666654
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
.... .++ .. ..... .+.+++.+...+...++..|..++ +|+...++.. ...+|..+++.+.+.
T Consensus 341 ~~~~-------~~~--~~-~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~g~~~~~~~~g~ 403 (438)
T 3o7q_A 341 ISAF-------AGG--HV-GLIAL----TLCSAFMSIQYPTIFSLGIKNLGQ--DTKYGSSFIV-MTIIGGGIVTPVMGF 403 (438)
T ss_dssp HHHH-------CCH--HH-HHHHH----HHHHHHHTTHHHHHHHHHHSSCGG--GHHHHHHHHH-HTTHHHHHHHHHHHH
T ss_pred HHHH-------cCC--cH-HHHHH----HHHHHHHHHHHHHHHHHHHhhccc--cccchhhHHH-HHHHHHHHHHHHHHH
Confidence 4331 111 11 11111 345566666666667776676653 3666666655 455676666665555
Q ss_pred HHH
Q 021040 186 VFS 188 (318)
Q Consensus 186 l~~ 188 (318)
+.+
T Consensus 404 l~~ 406 (438)
T 3o7q_A 404 VSD 406 (438)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.04 E-value=4e-09 Score=98.97 Aligned_cols=171 Identities=13% Similarity=0.020 Sum_probs=104.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHHHHHHHHHHhCCCCCCcccCccchhH
Q 021040 45 TYLLLFLTDIGLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVLVAVSFSSVFGGCMPCRILSTSTLKV 124 (318)
Q Consensus 45 ~~l~~~l~~~gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 124 (318)
.|.+.+.++.+.+............+...++.++.+.+.||+|||+. +..+.....++...+.. . .........
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~-~~~~~~~~~~~~~~l~~--~---~~~~~~~~~ 371 (491)
T 4gc0_A 298 YYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPL-QIIGALGMAIGMFSLGT--A---FYTQAPGIV 371 (491)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHH-HHHHHHHHHHHHHHHHH--H---HHTTCCHHH
T ss_pred hcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcch-hccchHHHHHHHHHHHH--H---HhcccchHH
Confidence 34444444558888887777778888899999999999999999988 45566665555443311 0 001111111
Q ss_pred HHHHHHHHHHHHHHHHhhh-HHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccchhHHHH
Q 021040 125 ETISYCVFAAIFNVGWAAT-QVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTAKTHADLENQYR 203 (318)
Q Consensus 125 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (318)
..... .++..+++.. .+....+.+|+.| .+.|+++.++.+..+.+++.+++.+.+.+...... ....++.
T Consensus 372 ~~~~~----~~~~~~~~~~~~~~~~~~~~E~fP-t~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~----~~~~~~~ 442 (491)
T 4gc0_A 372 ALLSM----LFYVAAFAMSWGPVCWVLLSEIFP-NAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL----VAHFHNG 442 (491)
T ss_dssp HHHHH----HHHHHHHHTTTTHHHHHHHHHSSC-TTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH----HHHHTTC
T ss_pred HHHHH----HHHHHHHHhHHHHHHHHHHHHhCC-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhhhhhh
Confidence 11111 1122222221 2223457789886 47899999998888888888776654333221100 0012344
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc
Q 021040 204 WIAYSSIFIGCCFVGIFLSRTEEPRLK 230 (318)
Q Consensus 204 ~~~~i~~~~~~l~~~~~~~~~~e~~~~ 230 (318)
+.++++++++++..+..++++||++.+
T Consensus 443 ~~~~i~~~~~~~~~i~~~~~~PETkg~ 469 (491)
T 4gc0_A 443 FSYWIYGCMGVLAALFMWKFVPETKGK 469 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHheecCCCCC
Confidence 566778888888888888899998644
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.88 E-value=2.4e-09 Score=100.56 Aligned_cols=170 Identities=9% Similarity=-0.126 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHH----HHHHHHHHHHHHHHhCCCCCC
Q 021040 40 AACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWH----GAGSVLVAVSFSSVFGGCMPC 114 (318)
Q Consensus 40 ~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l----~~g~~~~~i~~~~~~~~~~~~ 114 (318)
......+++.|..+. +.+..+.+.......+...+..++.|+++||+|||++.. ..+.++.++++..+.. ...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 376 (491)
T 4aps_A 299 EEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI--PGA 376 (491)
T ss_dssp HGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH--HHH
T ss_pred HhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH--HHH
Confidence 333446778888885 777677788888888888999999999999999986532 1455555555332210 000
Q ss_pred cc--cCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 021040 115 RI--LSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIVFSVSTA 192 (318)
Q Consensus 115 ~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 192 (318)
.. ..+.+....... .++.+++.+...+...++..|..| +++|+++.++.+....+|..+++.+. +...
T Consensus 377 ~~~~~~~~~~~~~~~~----~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~i~~~~~----~~~~- 446 (491)
T 4aps_A 377 LYGTSGKVSPLWLVGS----WALVILGEMLISPVGLSVTTKLAP-KAFNSQMMSMWFLSSSVGSALNAQLV----TLYN- 446 (491)
T ss_dssp HCCCCTTCCTHHHHHH----HHHHHHHHHTTTTHHHHHHHHHTT-TTCSSSSTHHHHHHHHHHHHHHHHHG----GGGG-
T ss_pred hcCCCCCccHHHHHHH----HHHHHHHHHHHhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh-
Confidence 00 001122222221 234566666666666778888876 47899999998888888877665442 2222
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 021040 193 KTHADLENQYRWIAYSSIFIGCCFVGIFLSRTEEP 227 (318)
Q Consensus 193 ~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~e~ 227 (318)
..++.+.+.+.++++++..++.++..++.
T Consensus 447 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 447 ------AKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp ------GSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred ------cccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12445566666666666666655555554
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.27 E-value=2.4e-07 Score=83.69 Aligned_cols=144 Identities=13% Similarity=0.011 Sum_probs=89.9
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHHHHHhhhhHHHhhhccCchHHHHHHHHH-HHHHHH
Q 021040 28 YYGSGHMLNDITAACWFTYLLLFLTDI-GLSPRGAAAVMLSGQIADGFATIFIGELIDRFGHFKIWHGAGSVL-VAVSFS 105 (318)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~l~~~l~~~-gls~~~~g~i~~~~~i~~~i~~p~~G~lsDr~Grr~~~l~~g~~~-~~i~~~ 105 (318)
...+..+...........+++.|+++. |.++.+.|.+.....+...++.++.|+++||+||| . ..+... ...+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~-~--~~~~~~~~~~~~~ 279 (375)
T 2gfp_A 203 CYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL-M--WQSVICCLLAGLL 279 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH-H--HHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHH
Confidence 333444444455556667788888884 99999999999999999999999999999999872 2 223322 111110
Q ss_pred HHhCCCCCCcccCccchhHHHHHHHHHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 106 SVFGGCMPCRILSTSTLKVETISYCVFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFI 185 (318)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~ 185 (318)
+ .........+.+. ..+..++.+++.+...+...++..|..| ++|+++.+..+....+|..+++.+.+.
T Consensus 280 -~----~~~~~~~~~~~~~----~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 280 -M----WIPDWFGVMNVWT----LLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp -S----SHHHHHHHHHHHH----HHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred -H----HHHhhhccccHHH----HHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0000000011111 1122234566777666667777778764 689999999888888777665544433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.12 E-value=6.5e-06 Score=77.73 Aligned_cols=120 Identities=14% Similarity=0.085 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHh----hhccCc---hHHHHHHHHHHHHHHHHHhCCCCCCcc--cCccchhHHHHHHH
Q 021040 60 GAAAVMLSGQIADGFATIFIGELI----DRFGHF---KIWHGAGSVLVAVSFSSVFGGCMPCRI--LSTSTLKVETISYC 130 (318)
Q Consensus 60 ~~g~i~~~~~i~~~i~~p~~G~ls----Dr~Grr---~~~l~~g~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 130 (318)
..+.+.....+...+..++.+++. ||.||| +..+..+.++.++++..+.. ..... ....+.++....
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-- 411 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGT--IQLMMDGGSALSIFWQILP-- 411 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTT--TTTTTTTTCCCCSHHHHHH--
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHH--HHHHhcCCCCcCHHHHHHH--
Confidence 355555555566667778887775 555543 12245666666666543321 11000 001122222222
Q ss_pred HHHHHHHHHHhhhHHhHhhhccccccCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021040 131 VFAAIFNVGWAATQVAHMSMVNCITLNSTSRVVLTSCRNAFTMVANLSLYAIAFIV 186 (318)
Q Consensus 131 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~g~~~~~~~~~~l 186 (318)
.++.+++.+...++..++..|..| +++|+++.++.+....+|+.+++.+.+.+
T Consensus 412 --~~l~g~~~~~~~~~~~~~~~~~~p-~~~~g~~~g~~~~~~~~g~~~g~~~~g~~ 464 (524)
T 2xut_A 412 --YALLTFGEVLVSATGLEFAYSQAP-KAMKGTIMSFWTLSVTVGNLWVLLANVSV 464 (524)
T ss_dssp --HHHHHHHHHHHHHHHTTTHHHHCC-TTCCTTTHHHHGGGHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhCc-HHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 234667777777777788888876 57899999999888888888776655433
No 15
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=66.61 E-value=8.4 Score=20.88 Aligned_cols=22 Identities=18% Similarity=0.419 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 021040 294 IIYICSFIVSILLQVISLKLYS 315 (318)
Q Consensus 294 ~~~v~~~i~~~~~~~i~~~~~~ 315 (318)
+..+.+++.+++.-|+++.+|+
T Consensus 10 iAL~~Al~~~iLA~rLg~~LY~ 31 (31)
T 1jb0_M 10 VALVIALLPAVLAFRLSTELYK 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567889999999999999995
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=35.52 E-value=14 Score=18.28 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=10.4
Q ss_pred hhHHHhhhccCch
Q 021040 78 FIGELIDRFGHFK 90 (318)
Q Consensus 78 ~~G~lsDr~Grr~ 90 (318)
++|.+..++|||.
T Consensus 2 lfgklikkfgrka 14 (26)
T 2g9p_A 2 LFGKLIKKFGRKA 14 (26)
T ss_dssp HHHHHHHHHTSHH
T ss_pred cHHHHHHHHhHHH
Confidence 4688899999874
No 17
>2yvc_D Neprilysin; protein-peptide complex, cell adhesion; 3.20A {Mus musculus}
Probab=29.39 E-value=18 Score=18.04 Aligned_cols=10 Identities=20% Similarity=0.215 Sum_probs=7.3
Q ss_pred cccccCCCCC
Q 021040 9 YDIENDDSFT 18 (318)
Q Consensus 9 ~~~~~~~~~~ 18 (318)
.|++|++.-+
T Consensus 7 mditdinapk 16 (26)
T 2yvc_D 7 MDITDINAPK 16 (26)
T ss_pred cccccccCCC
Confidence 5889888733
No 18
>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...
Probab=27.40 E-value=84 Score=19.95 Aligned_cols=30 Identities=7% Similarity=0.053 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccC
Q 021040 289 ALVPAIIYICSFIVSILLQVISLKLYSMHT 318 (318)
Q Consensus 289 ~~~~~~~~v~~~i~~~~~~~i~~~~~~~~~ 318 (318)
+.....+.+++++.....|...++++|+|.
T Consensus 18 S~y~~~i~~gaf~fe~~~d~~~d~iw~~~N 47 (62)
T 1pp9_J 18 STFALTIVVGALFFERAFDQGADAIYEHIN 47 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHhcc
Confidence 344456678889999999999999998863
Done!