Query 021041
Match_columns 318
No_of_seqs 223 out of 1199
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:09:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021041.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021041hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03006 carbonate dehydratase 100.0 5.2E-71 1.1E-75 522.9 24.2 265 47-318 36-301 (301)
2 PLN03014 carbonic anhydrase 100.0 9.2E-64 2E-68 479.3 25.7 255 41-301 78-333 (347)
3 PLN03019 carbonic anhydrase 100.0 3.5E-63 7.7E-68 473.1 26.0 251 44-301 76-327 (330)
4 PLN02154 carbonic anhydrase 100.0 6.2E-59 1.4E-63 438.2 25.6 234 74-318 56-290 (290)
5 PLN00416 carbonate dehydratase 100.0 1.2E-58 2.7E-63 432.7 25.6 250 43-301 3-254 (258)
6 cd00884 beta_CA_cladeB Carboni 100.0 8.7E-52 1.9E-56 371.6 20.4 187 105-292 2-190 (190)
7 cd00883 beta_CA_cladeA Carboni 100.0 3.1E-51 6.8E-56 365.5 20.5 178 107-292 3-182 (182)
8 PRK10437 carbonic anhydrase; P 100.0 7.3E-51 1.6E-55 372.6 22.9 193 98-298 4-197 (220)
9 PRK15219 carbonic anhydrase; P 100.0 5.2E-50 1.1E-54 372.4 21.7 190 91-292 53-244 (245)
10 COG0288 CynT Carbonic anhydras 100.0 1.2E-48 2.7E-53 355.3 19.4 196 97-298 3-201 (207)
11 KOG1578 Predicted carbonic anh 100.0 1E-48 2.2E-53 362.8 14.0 252 40-318 24-276 (276)
12 cd03378 beta_CA_cladeC Carboni 100.0 1.4E-45 3.1E-50 321.4 17.9 152 91-291 1-153 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 1.3E-42 2.9E-47 299.4 19.1 151 131-289 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 4.1E-41 8.8E-46 281.6 15.7 119 127-292 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 1.4E-38 3E-43 273.6 11.5 142 127-292 1-142 (142)
16 KOG1578 Predicted carbonic anh 97.9 7.1E-07 1.5E-11 84.2 -4.1 104 121-224 20-150 (276)
17 PF10070 DUF2309: Uncharacteri 50.5 23 0.00049 39.0 4.8 38 259-296 540-583 (788)
18 COG1254 AcyP Acylphosphatases 48.7 14 0.00031 29.7 2.3 23 274-296 29-51 (92)
19 PF04019 DUF359: Protein of un 41.5 1.4E+02 0.003 25.2 7.3 81 122-209 5-85 (121)
20 PF07859 Abhydrolase_3: alpha/ 38.1 27 0.00059 30.3 2.6 34 172-205 50-88 (211)
21 KOG3995 3-hydroxyanthranilate 36.4 28 0.00061 32.6 2.5 47 269-315 195-253 (279)
22 PF00009 GTP_EFTU: Elongation 34.9 22 0.00048 30.9 1.5 16 187-202 3-18 (188)
23 PRK11440 putative hydrolase; P 33.1 85 0.0019 27.5 5.0 48 147-203 90-137 (188)
24 PF05952 ComX: Bacillus compet 31.7 66 0.0014 23.9 3.3 25 256-280 5-29 (57)
25 PLN02621 nicotinamidase 31.5 2.6E+02 0.0055 24.9 7.9 38 150-196 99-136 (197)
26 cd01891 TypA_BipA TypA (tyrosi 30.7 31 0.00067 30.1 1.7 13 187-199 2-14 (194)
27 PF00857 Isochorismatase: Isoc 28.8 1.8E+02 0.0038 24.6 6.1 46 151-205 85-130 (174)
28 PF00355 Rieske: Rieske [2Fe-2 27.4 26 0.00057 27.1 0.6 16 276-291 65-80 (97)
29 cd01890 LepA LepA subfamily. 26.5 36 0.00077 28.7 1.3 13 188-200 1-13 (179)
30 TIGR03100 hydr1_PEP hydrolase, 26.2 74 0.0016 29.5 3.5 32 173-205 84-116 (274)
31 PRK14432 acylphosphatase; Prov 25.1 86 0.0019 25.1 3.2 20 275-294 28-47 (93)
32 TIGR01838 PHA_synth_I poly(R)- 23.8 76 0.0016 33.3 3.4 29 173-201 247-275 (532)
33 COG1116 TauB ABC-type nitrate/ 23.8 45 0.00097 31.8 1.5 16 187-202 29-44 (248)
34 TIGR01250 pro_imino_pep_2 prol 23.8 90 0.002 27.3 3.5 31 175-205 83-113 (288)
35 PF13580 SIS_2: SIS domain; PD 23.3 1.3E+02 0.0028 25.2 4.2 38 148-194 100-138 (138)
36 cd03528 Rieske_RO_ferredoxin R 23.1 32 0.0007 26.7 0.4 15 276-290 61-75 (98)
37 COG4027 Uncharacterized protei 22.7 56 0.0012 29.5 1.8 91 73-163 77-171 (194)
38 cd04160 Arfrp1 Arfrp1 subfamil 22.5 44 0.00096 27.7 1.2 14 189-202 1-14 (167)
39 PF12697 Abhydrolase_6: Alpha/ 22.5 96 0.0021 25.7 3.2 31 173-203 51-81 (228)
40 PF00561 Abhydrolase_1: alpha/ 22.2 85 0.0018 26.7 2.9 31 172-203 28-58 (230)
41 PRK03592 haloalkane dehalogena 22.1 92 0.002 28.6 3.3 32 175-206 80-111 (295)
42 PRK14445 acylphosphatase; Prov 21.9 1.3E+02 0.0029 23.7 3.7 21 274-294 29-49 (91)
43 cd03478 Rieske_AIFL_N AIFL (ap 21.7 31 0.00067 26.9 0.0 15 276-290 60-74 (95)
44 cd04169 RF3 RF3 subfamily. Pe 21.7 55 0.0012 30.9 1.7 16 187-202 2-17 (267)
45 PRK14423 acylphosphatase; Prov 21.4 1.3E+02 0.0029 23.8 3.6 21 274-294 30-50 (92)
46 cd01887 IF2_eIF5B IF2/eIF5B (i 21.2 57 0.0012 26.9 1.6 15 188-202 1-15 (168)
47 cd03548 Rieske_RO_Alpha_OMO_CA 21.1 52 0.0011 27.7 1.3 17 276-292 77-93 (136)
48 cd01878 HflX HflX subfamily. 21.0 60 0.0013 28.3 1.7 17 186-202 40-56 (204)
49 PLN02824 hydrolase, alpha/beta 20.9 98 0.0021 28.4 3.2 31 175-205 89-119 (294)
50 cd04167 Snu114p Snu114p subfam 20.9 51 0.0011 29.3 1.3 15 188-202 1-15 (213)
No 1
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=5.2e-71 Score=522.86 Aligned_cols=265 Identities=54% Similarity=0.961 Sum_probs=236.2
Q ss_pred HHHHhhhhHhhhhc-cccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHHHHhhhh
Q 021041 47 RDAQQGFTPVLKRR-SFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAK 125 (318)
Q Consensus 47 ~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~ 125 (318)
.-++.+|...+|++ .+++.+|+ .|+++||+||+....+ +..+++++++|++||++|+..++.+++++|++|++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~ 109 (301)
T PLN03006 36 KTTQLRIPASFRRKATNLQVMAS--GKTPGLTQEANGVAID----RQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLAD 109 (301)
T ss_pred ceeEecccccccccccchhhhhh--hchHHHHHHHhhccCC----CCCcccHHHHHHHHHHhchhhccccCHHHHHHhcc
Confidence 44667777766655 48889999 9999999999865532 33479999999999999999999999999999999
Q ss_pred cCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHh
Q 021041 126 AQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 126 gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~ 205 (318)
||+|+++||+||||||+|+.|||++|||+||||||||+|+|++.+..++.+||||||.+|+|++|||||||+||||+|++
T Consensus 110 GQ~P~~lvI~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 110 AQAPKFLVIACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGPTETKAALEFSVNTLNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred CCCCCEEEEEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccccchhhhHHHHHHHhCCCEEEEecCCCchHHHHHh
Confidence 99999999999999999999999999999999999999999876556799999999999999999999999999999999
Q ss_pred hhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEEEcc
Q 021041 206 RMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLL 285 (318)
Q Consensus 206 ~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vYDi~ 285 (318)
+..+.+.. .++|+.|+..+.+++...........+++++..++++||+.||++|++||+|++++++|+|.|||||||+.
T Consensus 190 ~~~~~g~~-~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~ 268 (301)
T PLN03006 190 KMEDEGDS-RSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFV 268 (301)
T ss_pred hccccCCc-hhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECC
Confidence 86655433 37999999988888766543333446778888999999999999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCCcccccccCccccccCCCCC
Q 021041 286 NCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 318 (318)
Q Consensus 286 tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (318)
||+|+.|+++|+.+.++-||||||++|||+|||
T Consensus 269 tG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (301)
T PLN03006 269 DCTFEKWTVDYAASRGKKKEGSGIAVKDRSVWS 301 (301)
T ss_pred CceEEEecccccccccccccCCceeeecccccC
Confidence 999999999999999887899999999999998
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=9.2e-64 Score=479.32 Aligned_cols=255 Identities=38% Similarity=0.669 Sum_probs=225.8
Q ss_pred hhhhhhHHHHhhhhHhhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHHH
Q 021041 41 MKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHF 120 (318)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~ 120 (318)
|...-+++||++|+|||++|.+|+.+|+ +|++++|+||+..... ..+.++++++|.+||.+|+.+.+.+++++|
T Consensus 78 m~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~~lerL~~GN~rF~~~~~~~~~~~~ 151 (347)
T PLN03014 78 MGTEAYDEAIEALKKLLIEKEELKTVAA--AKVEQITAALQTGTSS----DKKAFDPVETIKQGFIKFKKEKYETNPALY 151 (347)
T ss_pred hchhhHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHhcccCC----CCCCcCHHHHHHHHHHHHHhhccccCHHHH
Confidence 4444589999999999999999999999 9999999999974431 134688899999999999998899999999
Q ss_pred HhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCC-CCcchhhHHHHHHHhcCccEEEEEecCcch
Q 021041 121 QNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCG 199 (318)
Q Consensus 121 ~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CG 199 (318)
+++++||+|+++||+||||||+|+.|||++|||+||+||+||+|++++. ++.++.++|||||.+|+|++|||||||+||
T Consensus 152 ~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~CG 231 (347)
T PLN03014 152 GELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSACG 231 (347)
T ss_pred HhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCch
Confidence 9999999999999999999999999999999999999999999999764 234688999999999999999999999999
Q ss_pred HHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEE
Q 021041 200 GIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHG 279 (318)
Q Consensus 200 av~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G 279 (318)
||+|+++..+++....++|++|+..+.|++.+.........+.+++..|+++||+.||++|++||+|++++++|+|.|||
T Consensus 232 aV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~G 311 (347)
T PLN03014 232 GIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALKG 311 (347)
T ss_pred HHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEEE
Confidence 99999876543332347999999999999876655444557777888889999999999999999999999999999999
Q ss_pred EEEEccCCeEEEEeecCCCCcc
Q 021041 280 GYYDLLNCTFEKWTLDYKGRKV 301 (318)
Q Consensus 280 ~vYDi~tG~ve~~~~~~~~~~~ 301 (318)
|+||++||+|+.|..+++.+..
T Consensus 312 ~~YDi~TG~V~~l~~~~~~~~~ 333 (347)
T PLN03014 312 GYYDFVKGAFELWGLEFGLSET 333 (347)
T ss_pred EEEECCCceEEEeccccccCCc
Confidence 9999999999999999988764
No 3
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=3.5e-63 Score=473.13 Aligned_cols=251 Identities=39% Similarity=0.692 Sum_probs=221.2
Q ss_pred hhhHHHHhhhhHhhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHHHHhh
Q 021041 44 EKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNL 123 (318)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~l 123 (318)
.-+++||++|+|||++|.+|+.+|+ +|+.+||+||+..... ..++++++++|++||.+|+.+.+.+++++|+++
T Consensus 76 ~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~l~~~~~~----~~~~~~ale~Ll~GN~rF~~~~~~~~p~~~~~L 149 (330)
T PLN03019 76 ESYEDAIEALKKLLIEKDDLKDVAA--AKVKKITAELQAASSS----DSKSFDPVERIKEGFVTFKKEKYETNPALYGEL 149 (330)
T ss_pred hhHHHHHHHHHhhcccccccchHHH--HHHHHhhHHhhhccCC----CCchhHHHHHHHHHHHHHHhccccccHHHHHhh
Confidence 3589999999999999999999999 9999999999975431 135689999999999999998898999999999
Q ss_pred hhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCC-CCcchhhHHHHHHHhcCccEEEEEecCcchHHH
Q 021041 124 AKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCGGIQ 202 (318)
Q Consensus 124 a~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~ 202 (318)
+.||+|+++||+||||||+|+.|||++|||+||||||||+|+|++. ++.++.+||||||.+|||++|||||||+||||+
T Consensus 150 a~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~~L~V~~IVV~GHs~CGaVk 229 (330)
T PLN03019 150 AKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVLHLKVENIVVIGHSACGGIK 229 (330)
T ss_pred ccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHHHhCCCEEEEecCCCchHHH
Confidence 9999999999999999999999999999999999999999998764 334688999999999999999999999999999
Q ss_pred HHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEE
Q 021041 203 ALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYY 282 (318)
Q Consensus 203 Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vY 282 (318)
|+++..+++....++|++|+..+.|++...........+++++..+++ ||+.||++|+++|+|++++++|+|.||||+|
T Consensus 230 Aal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~P~V~e~v~~G~L~I~G~~Y 308 (330)
T PLN03019 230 GLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTYPFVREGVVKGTLALKGGYY 308 (330)
T ss_pred HHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhCHHHHHHHHcCCcEEEEEEE
Confidence 999755443322379999999999988665433334456666666666 9999999999999999999999999999999
Q ss_pred EccCCeEEEEeecCCCCcc
Q 021041 283 DLLNCTFEKWTLDYKGRKV 301 (318)
Q Consensus 283 Di~tG~ve~~~~~~~~~~~ 301 (318)
|++||+|+.|..+|+.+..
T Consensus 309 Dl~TG~V~~~~~~~~~~~~ 327 (330)
T PLN03019 309 DFVNGSFELWELQFGISPV 327 (330)
T ss_pred ECCCceEEEEccccCcCCC
Confidence 9999999999999998763
No 4
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=6.2e-59 Score=438.22 Aligned_cols=234 Identities=54% Similarity=0.973 Sum_probs=204.3
Q ss_pred hhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCc
Q 021041 74 AALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGE 153 (318)
Q Consensus 74 ~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD 153 (318)
++++.++.+... ++..+++.|++|++||.+|+..++.+++++|+.|+.||+|+++||+||||||||+.|||++|||
T Consensus 56 ~~~~~~~~~~~~----~~~~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGd 131 (290)
T PLN02154 56 LGIREEFMDLNR----ETETSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGE 131 (290)
T ss_pred chhhHHHHhccc----CcchhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCC
Confidence 345666665543 5788999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhhhccC-cchhhhhHHHHHHhhHHHHHHH
Q 021041 154 TFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD-VDSRQSLTENWVVNAKVAKFRT 232 (318)
Q Consensus 154 ~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~-~~~~~~~i~~wl~~~~~a~~~~ 232 (318)
+||+||+||+|++++.++.++.++|||||.+|+|++|||||||+||||+|+++.... +.. .+++++|+..+.+++.+.
T Consensus 132 lFvvRN~GNiv~~~~~g~~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~-~~~v~~Wl~~~~~a~~~~ 210 (290)
T PLN02154 132 AFTIRNVANLVTPVQNGPTETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQH-SSLVERWVMNGKAAKLRT 210 (290)
T ss_pred EEEEeccCCccCCccCCccchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCcccccc-chHHHHHHHHHHHHHHHH
Confidence 999999999999987766789999999999999999999999999999999874321 222 268999998877765543
Q ss_pred hhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEEEccCCeEEEEeecCCCCcccccccCccccc
Q 021041 233 KAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIK 312 (318)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vYDi~tG~ve~~~~~~~~~~~~~~~~~~~~~~ 312 (318)
....+...+++.++.++++||+.||++|++||+|++++++|+|+||||+||+.||+|+.|+.+.+ +.|++|+||
T Consensus 211 ~~~~~~~~~~~~~~~~e~~NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~------~f~~~~~~~ 284 (290)
T PLN02154 211 QLASSHLSFDEQCRNCEKESIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSD------KTNYGFYIS 284 (290)
T ss_pred hhcccCCCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccC------cccCceeec
Confidence 32223345667777888999999999999999999999999999999999999999999999775 467789999
Q ss_pred cCCCCC
Q 021041 313 DHSFWS 318 (318)
Q Consensus 313 ~~~~~~ 318 (318)
||+|||
T Consensus 285 ~~~~~~ 290 (290)
T PLN02154 285 DREIWS 290 (290)
T ss_pred cccccC
Confidence 999998
No 5
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.2e-58 Score=432.74 Aligned_cols=250 Identities=40% Similarity=0.710 Sum_probs=210.6
Q ss_pred hhhhHHHHhhhhHhhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHHHHh
Q 021041 43 LEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEHFQN 122 (318)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~ 122 (318)
++.+++++.+|.++|+.+..++.+++ .+...|++.|+.... .|+++++.|.++|+||++ ..+.+++++|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~al~~Ll~Gn~rF~~---~~~~~~~~~~~~ 73 (258)
T PLN00416 3 TESYEAAIKGLNDLLSTKADLGNVAA--AKIKALTAELKELDS----SNSDAIERIKTGFTQFKT---EKYLKNSTLFNH 73 (258)
T ss_pred cccHHHHHHHHHhhcccccccchHHH--HhHHHHHHHHHHhhc----CHHHHHHHHHHHHHHHHh---cccccCHHHHHh
Confidence 44578999999999999999999999 999999999999764 245555555555555554 446677899999
Q ss_pred hhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCC-CCcchhhHHHHHHHhcCccEEEEEecCcchHH
Q 021041 123 LAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDCGGI 201 (318)
Q Consensus 123 la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav 201 (318)
++.||+|+++|||||||||+|+.|||++|||+|||||+||+|++++. +.+++.+||||||.+|||++|||||||+||||
T Consensus 74 la~gQ~P~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV 153 (258)
T PLN00416 74 LAKTQTPKFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGI 153 (258)
T ss_pred hccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHH
Confidence 99999999999999999999999999999999999999999998764 22468899999999999999999999999999
Q ss_pred HHHhhhccCc-chhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEE
Q 021041 202 QALMRMQDDV-DSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGG 280 (318)
Q Consensus 202 ~Aa~~~~~~~-~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~ 280 (318)
+|+++..+.. ....+++..|+..+.|++..........++.+.+..++++||++|+++|++||+|++++++|+|.||||
T Consensus 154 ~Aa~~~~~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~ 233 (258)
T PLN00416 154 KGLMSIEDDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGG 233 (258)
T ss_pred HHHHhccccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEE
Confidence 9998743221 111258999999999987655433334456666677889999999999999999999999999999999
Q ss_pred EEEccCCeEEEEeecCCCCcc
Q 021041 281 YYDLLNCTFEKWTLDYKGRKV 301 (318)
Q Consensus 281 vYDi~tG~ve~~~~~~~~~~~ 301 (318)
+||++||+|+.+.++++.+.+
T Consensus 234 ~Ydl~TG~v~~~~~~~~~~p~ 254 (258)
T PLN00416 234 HYNFVKGTFDLWELDFKTTPA 254 (258)
T ss_pred EEECCCceEEEeccCcCCCCC
Confidence 999999999999999876653
No 6
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=8.7e-52 Score=371.58 Aligned_cols=187 Identities=47% Similarity=0.719 Sum_probs=159.9
Q ss_pred HHhchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCC--CCcchhhHHHHHH
Q 021041 105 FLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN--GPSETNAALEFAV 182 (318)
Q Consensus 105 F~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~--~~~~~~aSLEyAV 182 (318)
|.+|+...+.+++++|++++.||+|+++||+||||||+|+.+||.+|||+||+||+||+|++++. ++.++.++|||||
T Consensus 2 ~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleyav 81 (190)
T cd00884 2 FRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYAV 81 (190)
T ss_pred hHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHHH
Confidence 33444455667889999999999999999999999999999999999999999999999998754 4457999999999
Q ss_pred HhcCccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhh
Q 021041 183 NTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLT 262 (318)
Q Consensus 183 ~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~ 262 (318)
.+|+|++|||||||+||||+|+++.... ....+++..|+..+.++...........+..+..+.++++||.+|+++|++
T Consensus 82 ~~l~v~~ivV~GH~~Cgav~Aa~~~~~~-~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~~ 160 (190)
T cd00884 82 AVLKVEHIVVCGHSDCGGIRALLSPEDL-LDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLLT 160 (190)
T ss_pred HHhCCCEEEEeCCCcchHHHHHhccccc-cCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999875331 112368999999999987765443333445556678899999999999999
Q ss_pred CHHHHHHHhCCccEEEEEEEEccCCeEEEE
Q 021041 263 YPWIEERVRKELLFIHGGYYDLLNCTFEKW 292 (318)
Q Consensus 263 ~P~V~~~v~~g~L~I~G~vYDi~tG~ve~~ 292 (318)
+|+|++++++|+|+||||+||+.||+|+.+
T Consensus 161 ~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 161 YPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred CHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 999999999999999999999999999853
No 7
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.1e-51 Score=365.46 Aligned_cols=178 Identities=31% Similarity=0.533 Sum_probs=152.9
Q ss_pred hchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcC
Q 021041 107 SFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLE 186 (318)
Q Consensus 107 ~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~ 186 (318)
+|....+...+++|++++.||+|+++|||||||||+|+.+||++|||+||+||+||+|++.+ .++.+||||||.+||
T Consensus 3 ~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~---~~~~asleyAv~~L~ 79 (182)
T cd00883 3 AWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTD---LNCLSVLQYAVDVLK 79 (182)
T ss_pred hhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCC---cchhhhHHHHHHhcC
Confidence 34444466889999999999999999999999999999999999999999999999999864 368999999999999
Q ss_pred ccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCC-CHHHHhHHHHHHHHHHHHHHHhhCHH
Q 021041 187 VQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHL-SFDQQCRHCEKESISRSILNLLTYPW 265 (318)
Q Consensus 187 Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~~P~ 265 (318)
|++|||||||+||||+|+++... .+++.+|+..+.++........... +.++..+.++++||++|+++|+++|+
T Consensus 80 v~~IvV~GHs~CGav~a~~~~~~-----~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~ 154 (182)
T cd00883 80 VKHIIVCGHYGCGGVKAALTGKR-----LGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCKTPI 154 (182)
T ss_pred CCEEEEecCCCchHHHHHHcCCC-----CccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 99999999999999999986431 2689999998888665432222222 34455677899999999999999999
Q ss_pred HHHHHhC-CccEEEEEEEEccCCeEEEE
Q 021041 266 IEERVRK-ELLFIHGGYYDLLNCTFEKW 292 (318)
Q Consensus 266 V~~~v~~-g~L~I~G~vYDi~tG~ve~~ 292 (318)
|++++++ |+|.||||+||+.||+|+.+
T Consensus 155 i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 155 VQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred HHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999 89999999999999999863
No 8
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=7.3e-51 Score=372.62 Aligned_cols=193 Identities=26% Similarity=0.460 Sum_probs=167.5
Q ss_pred HHHHHHHHHhchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhH
Q 021041 98 FEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAA 177 (318)
Q Consensus 98 l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aS 177 (318)
+++|++||.+|....+..++++|+.++.+|+|+++|||||||||+|+.+||++|||+||+||+||+|++.+ .+++++
T Consensus 4 ~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~---~~~~~~ 80 (220)
T PRK10437 4 IDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTD---LNCLSV 80 (220)
T ss_pred HHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCC---cchHHH
Confidence 55666666677666666789999999999999999999999999999999999999999999999999754 368999
Q ss_pred HHHHHHhcCccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHH
Q 021041 178 LEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSI 257 (318)
Q Consensus 178 LEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv 257 (318)
|||||.+|+|++|||||||+||||+|+++... .++++.|+..+.++...........+.++.++.++++||..|+
T Consensus 81 leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~qv 155 (220)
T PRK10437 81 VQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQV 155 (220)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986422 1689999999998876544333344555667788999999999
Q ss_pred HHHhhCHHHHHHHhCC-ccEEEEEEEEccCCeEEEEeecCCC
Q 021041 258 LNLLTYPWIEERVRKE-LLFIHGGYYDLLNCTFEKWTLDYKG 298 (318)
Q Consensus 258 ~~L~~~P~V~~~v~~g-~L~I~G~vYDi~tG~ve~~~~~~~~ 298 (318)
++|+++|+|++++++| +|.||||+||+.||+|+.+..+...
T Consensus 156 ~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~ 197 (220)
T PRK10437 156 YNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATN 197 (220)
T ss_pred HHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCc
Confidence 9999999999999999 6999999999999999998876654
No 9
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=5.2e-50 Score=372.36 Aligned_cols=190 Identities=21% Similarity=0.260 Sum_probs=156.9
Q ss_pred CCchHHHHHHHHHHHHhchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCC
Q 021041 91 SCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG 170 (318)
Q Consensus 91 ~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~ 170 (318)
|+++++.|.++|+||++++..+. +....+.++++||+|+++||+|||||||||.|||.+|||+||+||+||+|++
T Consensus 53 p~~al~~L~~GN~rF~~~~~~~~-~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~---- 127 (245)
T PRK15219 53 PDQIIESLKQGNKRFRSGKPAQH-DYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND---- 127 (245)
T ss_pred HHHHHHHHHHHHHHHHhcCcCCc-hhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc----
Confidence 56677777777777777664321 1222224568999999999999999999999999999999999999999975
Q ss_pred CcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhh-cCCCHHHHhHHHH
Q 021041 171 PSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYT-AHLSFDQQCRHCE 249 (318)
Q Consensus 171 ~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 249 (318)
++++||||||.+|+|++|||||||+||||+|+++... .+++..|+..++|+....+... ...+.++.++.++
T Consensus 128 --~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~~~ 200 (245)
T PRK15219 128 --DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVDAVA 200 (245)
T ss_pred --chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHHHHH
Confidence 5889999999999999999999999999999987532 2689999999999876543211 1113345567788
Q ss_pred HHHHHHHHHHHhh-CHHHHHHHhCCccEEEEEEEEccCCeEEEE
Q 021041 250 KESISRSILNLLT-YPWIEERVRKELLFIHGGYYDLLNCTFEKW 292 (318)
Q Consensus 250 ~~nV~~qv~~L~~-~P~V~~~v~~g~L~I~G~vYDi~tG~ve~~ 292 (318)
++||+.|+++|++ +|++++.+++|+|+||||+||++||+|+++
T Consensus 201 ~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 201 RKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 9999999999986 899999999999999999999999999875
No 10
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=355.33 Aligned_cols=196 Identities=27% Similarity=0.462 Sum_probs=158.7
Q ss_pred HHHHHHHHHHhchhcccccchHHHHhhhh-cCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchh
Q 021041 97 YFEEMKQRFLSFKKNKYFEELEHFQNLAK-AQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETN 175 (318)
Q Consensus 97 ~l~~l~~rF~~f~~~~~~~~~~~~~~la~-gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~ 175 (318)
.++++++++.+|....+++.+++|+.++. +|+|+++|||||||||+||.+||++|||+||+||+||+|++++ .+++
T Consensus 3 ~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~---~~~l 79 (207)
T COG0288 3 ALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPD---GSVL 79 (207)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCc---cchh
Confidence 34455555555555547788899998765 5999999999999999999999999999999999999999864 3799
Q ss_pred hHHHHHHHhcCccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHH-HHhHHHHHHHHH
Q 021041 176 AALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFD-QQCRHCEKESIS 254 (318)
Q Consensus 176 aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~nV~ 254 (318)
+||||||.+|||++|||||||+|||++|+++....+.. .+..|+..+.+............... +.....++.||+
T Consensus 80 ~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~nV~ 156 (207)
T COG0288 80 RSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDNVR 156 (207)
T ss_pred HHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHHHH
Confidence 99999999999999999999999999999876544211 48999987777654433222221221 445566789999
Q ss_pred HHHHHHhhCHHHHHHHhCCc-cEEEEEEEEccCCeEEEEeecCCC
Q 021041 255 RSILNLLTYPWIEERVRKEL-LFIHGGYYDLLNCTFEKWTLDYKG 298 (318)
Q Consensus 255 ~qv~~L~~~P~V~~~v~~g~-L~I~G~vYDi~tG~ve~~~~~~~~ 298 (318)
+||.+|+++|.|+.++..|+ |.||||+||++||++..+......
T Consensus 157 ~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~ 201 (207)
T COG0288 157 EQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATID 201 (207)
T ss_pred HHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccc
Confidence 99999999999999988877 999999999999999888876544
No 11
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-48 Score=362.85 Aligned_cols=252 Identities=39% Similarity=0.619 Sum_probs=228.8
Q ss_pred hhhhhhhHHHHhhhhHhhhhccccccccccccChhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHhchhcccccchHH
Q 021041 40 TMKLEKIRDAQQGFTPVLKRRSFSKLETSSSSTAAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLSFKKNKYFEELEH 119 (318)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~f~~~~~~~~~~~ 119 (318)
.|....++.++....++|..+.++ +|+ .++.+||++ ++.++++.++|+.|+..+|..+|..
T Consensus 24 ~mp~~~~~~~~~~dsrml~~r~~~--~~~--~~~~~~~~~---------------~~~~~~i~~~Fv~~~~~~~~~~p~~ 84 (276)
T KOG1578|consen 24 DMPSPTAVMFTCMDSRMLPTRYNL--VAA--AKIKKLTAE---------------FDTLEDIGDMFVVRNSGNYIPNPTL 84 (276)
T ss_pred hCCCHHHHHHHHHHhhccchhhhh--hhh--hhhhhhhhc---------------cchHHHHHhhHhhhccccCCCChhh
Confidence 344555677888889999999988 788 999999993 5788899999999999999999999
Q ss_pred HHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCC-CCcchhhHHHHHHHhcCccEEEEEecCcc
Q 021041 120 FQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLEN-GPSETNAALEFAVNTLEVQNILVIGHSDC 198 (318)
Q Consensus 120 ~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~-~~~~~~aSLEyAV~~L~Vk~IVV~GHT~C 198 (318)
|..++++|+|+.+||+|+||||+|++|++++|||.|+|||++|+|+|++. ++..+.++|||+|.+|+|++|+||||++|
T Consensus 85 f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ghs~c 164 (276)
T KOG1578|consen 85 FGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVIGHSLC 164 (276)
T ss_pred hHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEeccccC
Confidence 99999999999999999999999999999999999999999999998865 56788999999999999999999999999
Q ss_pred hHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEE
Q 021041 199 GGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIH 278 (318)
Q Consensus 199 Gav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~ 278 (318)
||++++|....++. ...|+.+|+....+++...+...+.+.+++||..|+.+.++.++.+|.+||++++++..|.|.+|
T Consensus 165 gGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~l~~~ 243 (276)
T KOG1578|consen 165 GGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGFLQVH 243 (276)
T ss_pred CchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcceeee
Confidence 99999999877655 45899999999999999888888889999999999999999999999999999999999999999
Q ss_pred EEEEEccCCeEEEEeecCCCCcccccccCccccccCCCCC
Q 021041 279 GGYYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHSFWS 318 (318)
Q Consensus 279 G~vYDi~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (318)
|++||+.+|.+++|.+| |..+..+.+..+.+|+
T Consensus 244 G~~Y~fskg~~~~~~ld-------ekt~~~~~~~~~~~~s 276 (276)
T KOG1578|consen 244 GGYYNFSKGTKEFWELD-------EKTVDGLKTEKRSVYS 276 (276)
T ss_pred eeeEEeccCceeEEEec-------cccccccccccccccC
Confidence 99999999999999999 1344467788888875
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-45 Score=321.37 Aligned_cols=152 Identities=31% Similarity=0.464 Sum_probs=136.0
Q ss_pred CCchHHHHHHHHHHHHhchhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCC
Q 021041 91 SCGGLDYFEEMKQRFLSFKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENG 170 (318)
Q Consensus 91 ~~~~~~~l~~l~~rF~~f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~ 170 (318)
|+++++.|.++|++|.+.....+..+++.|..++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 4567777888888887765433333477899999999999999999999999999999999999999999999986
Q ss_pred CcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhhhccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHH
Q 021041 171 PSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEK 250 (318)
Q Consensus 171 ~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 250 (318)
++++|||||+.+|||++|||||||+||+++++ +++
T Consensus 77 --~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~~ 111 (154)
T cd03378 77 --DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AVR 111 (154)
T ss_pred --hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HHH
Confidence 58999999999999999999999999999864 257
Q ss_pred HHHHHHHHHHhhCHHHHH-HHhCCccEEEEEEEEccCCeEEE
Q 021041 251 ESISRSILNLLTYPWIEE-RVRKELLFIHGGYYDLLNCTFEK 291 (318)
Q Consensus 251 ~nV~~qv~~L~~~P~V~~-~v~~g~L~I~G~vYDi~tG~ve~ 291 (318)
+||++|+++|+++|+|++ ++++|+|.||||+||++||+++.
T Consensus 112 ~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~ 153 (154)
T cd03378 112 ANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEF 153 (154)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEe
Confidence 899999999999999988 99999999999999999999985
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=1.3e-42 Score=299.37 Aligned_cols=151 Identities=34% Similarity=0.605 Sum_probs=122.3
Q ss_pred EEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhhhccC
Q 021041 131 FMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMRMQDD 210 (318)
Q Consensus 131 ~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~ 210 (318)
++||||||||++|+.+||.+|||+||+||+||+|++.+ .++++|||||+.+||+++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~---~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~- 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPD---DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE- 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT----HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH-
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCccc---cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc-
Confidence 68999999999999999999999999999999998753 48999999999999999999999999999998876322
Q ss_pred cchhhhhHHHHHHhhHHHHHHH-hhhhcCC-CHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEEEccCCe
Q 021041 211 VDSRQSLTENWVVNAKVAKFRT-KAYTAHL-SFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLNCT 288 (318)
Q Consensus 211 ~~~~~~~i~~wl~~~~~a~~~~-~~~~~~~-~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vYDi~tG~ 288 (318)
..+.+++|+....++.... ....... ++.. ....+++||++|+++|+++|+|++++++|+|.||||+||++||+
T Consensus 77 ---~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ---EDGFLRDWLQKIRPALEECVDELLPSSWDFED-LDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ---TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHH-HHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ---ccchHHHHHHhhhhhHHHHHHHhhcccccHHH-HHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 1268999999888876652 2211122 2333 33448999999999999999999999999999999999999998
Q ss_pred E
Q 021041 289 F 289 (318)
Q Consensus 289 v 289 (318)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4.1e-41 Score=281.57 Aligned_cols=119 Identities=43% Similarity=0.754 Sum_probs=112.4
Q ss_pred CCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhh
Q 021041 127 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 206 (318)
Q Consensus 127 Q~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~ 206 (318)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+ .++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~---~~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a--- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYD---LDVLASLEYAVEVLGVKHIIVCGHTDCGAVKA--- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCc---ccHHHHHHHHHHhhCCCEEEEEccCCCcHHHH---
Confidence 899999999999999999999999999999999999999753 47999999999999999999999999999985
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEEEccC
Q 021041 207 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 286 (318)
Q Consensus 207 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vYDi~t 286 (318)
..++||++|+++|+++|+++++++.+++.|||++||++|
T Consensus 75 -----------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~t 113 (119)
T cd00382 75 -----------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIET 113 (119)
T ss_pred -----------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECCC
Confidence 247899999999999999999999999999999999999
Q ss_pred CeEEEE
Q 021041 287 CTFEKW 292 (318)
Q Consensus 287 G~ve~~ 292 (318)
|+++++
T Consensus 114 G~v~~~ 119 (119)
T cd00382 114 GKLEVL 119 (119)
T ss_pred CEEEeC
Confidence 999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=1.4e-38 Score=273.60 Aligned_cols=142 Identities=23% Similarity=0.323 Sum_probs=112.8
Q ss_pred CCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHhh
Q 021041 127 QSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALMR 206 (318)
Q Consensus 127 Q~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~ 206 (318)
+.++++||||||||++|+.+||++|||+||+|||||+|++ ++++||+||+.+||+++|+|||||+|||++++.+
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~ 74 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTDE 74 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecHH
Confidence 4689999999999999999999999999999999999986 6899999999999999999999999999998653
Q ss_pred hccCcchhhhhHHHHHHhhHHHHHHHhhhhcCCCHHHHhHHHHHHHHHHHHHHHhhCHHHHHHHhCCccEEEEEEEEccC
Q 021041 207 MQDDVDSRQSLTENWVVNAKVAKFRTKAYTAHLSFDQQCRHCEKESISRSILNLLTYPWIEERVRKELLFIHGGYYDLLN 286 (318)
Q Consensus 207 ~~~~~~~~~~~i~~wl~~~~~a~~~~~~~~~~~~~~~~~~~~~~~nV~~qv~~L~~~P~V~~~v~~g~L~I~G~vYDi~t 286 (318)
.+..|+............ ...........+++||++|+++|+++|+|++ +++||||+||++|
T Consensus 75 ----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~t 136 (142)
T cd03379 75 ----------ELKEKMKERGIAEAYGGI---DKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVKT 136 (142)
T ss_pred ----------HHHHHHHHhcCcchhccc---CcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECCC
Confidence 234455421111000000 1111111224578999999999999999997 5799999999999
Q ss_pred CeEEEE
Q 021041 287 CTFEKW 292 (318)
Q Consensus 287 G~ve~~ 292 (318)
|+++++
T Consensus 137 G~v~~v 142 (142)
T cd03379 137 GKLTEV 142 (142)
T ss_pred CEEEeC
Confidence 999864
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=97.87 E-value=7.1e-07 Score=84.16 Aligned_cols=104 Identities=25% Similarity=0.387 Sum_probs=78.7
Q ss_pred HhhhhcCCCcEEEEeccCCCCChhhh----------------hCCCCCceEEEeccCCCCCCCCC-CC-----cchhhHH
Q 021041 121 QNLAKAQSPKFMVIACADSRVCPSYI----------------LGLQPGETFMIRNVANLVPPLEN-GP-----SETNAAL 178 (318)
Q Consensus 121 ~~la~gQ~P~~lVItCsDSRV~Pe~i----------------~g~~pGD~FVvRNaGN~V~~~~~-~~-----~~~~aSL 178 (318)
.++..-++|.+..++|+|||+-|... +..+.||.|++||.||..+.... +. +--..+|
T Consensus 20 ~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~~~p~~f~~~~~~qsp~~l~i 99 (276)
T KOG1578|consen 20 EEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYIPNPTLFGALAKSQSPEPLAL 99 (276)
T ss_pred HHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCCCChhhhHHHhccCCCcceEE
Confidence 55667799999999999999999877 66789999999999999996533 11 1122566
Q ss_pred HHHHHhcCccEEEEEecCcchHHHHHhhhccCc-----chhhhhHHHHHHh
Q 021041 179 EFAVNTLEVQNILVIGHSDCGGIQALMRMQDDV-----DSRQSLTENWVVN 224 (318)
Q Consensus 179 EyAV~~L~Vk~IVV~GHT~CGav~Aa~~~~~~~-----~~~~~~i~~wl~~ 224 (318)
+-|+..-...+|++|||++|=++.......... ..-...++.|+..
T Consensus 100 ~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~ 150 (276)
T KOG1578|consen 100 ECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTT 150 (276)
T ss_pred EeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHH
Confidence 777778888999999999999999876554311 1111568888853
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=50.49 E-value=23 Score=39.01 Aligned_cols=38 Identities=16% Similarity=0.224 Sum_probs=29.2
Q ss_pred HHhhCHHHHHHHhCCcc------EEEEEEEEccCCeEEEEeecC
Q 021041 259 NLLTYPWIEERVRKELL------FIHGGYYDLLNCTFEKWTLDY 296 (318)
Q Consensus 259 ~L~~~P~V~~~v~~g~L------~I~G~vYDi~tG~ve~~~~~~ 296 (318)
.|...|-||+.+++..+ ..+|+..|..|-+|+.++.+.
T Consensus 540 ~llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 540 ALLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HHhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 34566777777765544 468999999999999998875
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=48.73 E-value=14 Score=29.73 Aligned_cols=23 Identities=17% Similarity=-0.052 Sum_probs=19.5
Q ss_pred ccEEEEEEEEccCCeEEEEeecC
Q 021041 274 LLFIHGGYYDLLNCTFEKWTLDY 296 (318)
Q Consensus 274 ~L~I~G~vYDi~tG~ve~~~~~~ 296 (318)
+|.|+||+++..+|.|+.+..-.
T Consensus 29 ~lgl~G~V~N~~DGsVeiva~G~ 51 (92)
T COG1254 29 RLGLTGWVKNLDDGSVEIVAEGP 51 (92)
T ss_pred HCCCEEEEEECCCCeEEEEEEcC
Confidence 36899999999999999887644
No 19
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=41.50 E-value=1.4e+02 Score=25.25 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=65.8
Q ss_pred hhhhcCCCcEEEEeccCCCCChhhhhCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHH
Q 021041 122 NLAKAQSPKFMVIACADSRVCPSYILGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGI 201 (318)
Q Consensus 122 ~la~gQ~P~~lVItCsDSRV~Pe~i~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav 201 (318)
-+..|-.|.+.+|-+==-|-+...... .....+.++|..+.+.. ++..+|..|+..-+--.|+|-|-.|=-++
T Consensus 5 ll~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 5 LLEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HHhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 346788999999999888887655444 56678999999999986 68889999988877889999999999888
Q ss_pred HHHhhhcc
Q 021041 202 QALMRMQD 209 (318)
Q Consensus 202 ~Aa~~~~~ 209 (318)
-+.+-.+.
T Consensus 78 Pail~aP~ 85 (121)
T PF04019_consen 78 PAILYAPE 85 (121)
T ss_pred HHHHhCCC
Confidence 87665443
No 20
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=38.06 E-value=27 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.451 Sum_probs=28.0
Q ss_pred cchhhHHHHHHHh-----cCccEEEEEecCcchHHHHHh
Q 021041 172 SETNAALEFAVNT-----LEVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 172 ~~~~aSLEyAV~~-----L~Vk~IVV~GHT~CGav~Aa~ 205 (318)
.++.+++++...+ ...+.|+|+|||..|.+...+
T Consensus 50 ~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~ 88 (211)
T PF07859_consen 50 EDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSL 88 (211)
T ss_dssp HHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHH
T ss_pred cccccceeeeccccccccccccceEEeecccccchhhhh
Confidence 3788999999998 778999999998877776543
No 21
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=36.39 E-value=28 Score=32.61 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=38.5
Q ss_pred HHhCCccEEEEE------------EEEccCCeEEEEeecCCCCcccccccCccccccCC
Q 021041 269 RVRKELLFIHGG------------YYDLLNCTFEKWTLDYKGRKVDEEEVGRHSIKDHS 315 (318)
Q Consensus 269 ~v~~g~L~I~G~------------vYDi~tG~ve~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (318)
.+++|.|.|+|- -||...|.|+.|..--+.+.+-+++|-+|+.|+.+
T Consensus 195 e~~~gp~~~~g~~y~t~v~~~g~gs~~~~~~~v~~~~w~~e~s~vv~~~g~~~~~~~~s 253 (279)
T KOG3995|consen 195 ELQAGPLSLFGDTYETQVIAYGQGSSEGLRQNVDVWLWQLEGSSVVTMGGRRLSLAPDS 253 (279)
T ss_pred HHhcCCeeeeCccceeeEEEeccccchhhcCceEEEEEEecCceEEeecCeEEeeCCcc
Confidence 467888998884 46788999999999888888877778889988765
No 22
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=34.92 E-value=22 Score=30.93 Aligned_cols=16 Identities=44% Similarity=0.825 Sum_probs=13.3
Q ss_pred ccEEEEEecCcchHHH
Q 021041 187 VQNILVIGHSDCGGIQ 202 (318)
Q Consensus 187 Vk~IVV~GHT~CGav~ 202 (318)
+.+|.|+||.+||=.+
T Consensus 3 ~~~I~i~G~~~sGKTT 18 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTT 18 (188)
T ss_dssp EEEEEEEESTTSSHHH
T ss_pred EEEEEEECCCCCCcEe
Confidence 6789999999999443
No 23
>PRK11440 putative hydrolase; Provisional
Probab=33.14 E-value=85 Score=27.53 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=33.5
Q ss_pred hCCCCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHH
Q 021041 147 LGLQPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQA 203 (318)
Q Consensus 147 ~g~~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~A 203 (318)
+...+||.++.++--+-... ..|+.-+...|+++|+|+|=+-..-|.+
T Consensus 90 l~~~~~d~vi~K~~~saF~~---------T~L~~~L~~~gi~~lii~Gv~T~~CV~~ 137 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG---------TDLELQLRRRGIDTIVLCGISTNIGVES 137 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC---------CCHHHHHHHCCCCEEEEeeechhHHHHH
Confidence 45578898887776554432 1467667889999999999665555543
No 24
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=31.68 E-value=66 Score=23.89 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=22.1
Q ss_pred HHHHHhhCHHHHHHHhCCccEEEEE
Q 021041 256 SILNLLTYPWIEERVRKELLFIHGG 280 (318)
Q Consensus 256 qv~~L~~~P~V~~~v~~g~L~I~G~ 280 (318)
-|..|..||-+-+.+++|++.+.|.
T Consensus 5 iV~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHHChHHHHHHHcCCeeEecC
Confidence 3678889999999999999999885
No 25
>PLN02621 nicotinamidase
Probab=31.54 E-value=2.6e+02 Score=24.85 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=24.8
Q ss_pred CCCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecC
Q 021041 150 QPGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHS 196 (318)
Q Consensus 150 ~pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT 196 (318)
.++|..+.++--+-... .-|+.-+...|+++|||+|=.
T Consensus 99 ~~~~~vi~K~~~saf~~---------t~L~~~L~~~gi~~lvi~Gv~ 136 (197)
T PLN02621 99 TGPDEVVEKSTYSAFYN---------TRLEERLRKIGVKEVIVTGVM 136 (197)
T ss_pred CCCCEEEECCCcCCCCC---------CcHHHHHHHCCCCEEEEEecc
Confidence 46776665553332221 146667888999999999953
No 26
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=30.69 E-value=31 Score=30.06 Aligned_cols=13 Identities=46% Similarity=0.866 Sum_probs=12.3
Q ss_pred ccEEEEEecCcch
Q 021041 187 VQNILVIGHSDCG 199 (318)
Q Consensus 187 Vk~IVV~GHT~CG 199 (318)
+++|+++||++||
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 27
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=28.82 E-value=1.8e+02 Score=24.63 Aligned_cols=46 Identities=13% Similarity=0.172 Sum_probs=36.0
Q ss_pred CCceEEEeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEecCcchHHHHHh
Q 021041 151 PGETFMIRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 151 pGD~FVvRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~ 205 (318)
+||..+.++--|..... -|+.-+...|+++|+|+|-.-.+-|.++.
T Consensus 85 ~~~~vi~K~~~saf~~t---------~L~~~L~~~gi~~vil~G~~t~~CV~~Ta 130 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT---------DLDEILRKRGIDTVILCGVATDVCVLATA 130 (174)
T ss_dssp TTSEEEEESSSSTTTTS---------SHHHHHHHTTESEEEEEEESTTTHHHHHH
T ss_pred cccceEEeecccccccc---------cccccccccccceEEEcccccCcEEehhH
Confidence 39999999977766432 36777888999999999988888777644
No 28
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=27.42 E-value=26 Score=27.08 Aligned_cols=16 Identities=25% Similarity=0.133 Sum_probs=13.1
Q ss_pred EEEEEEEEccCCeEEE
Q 021041 276 FIHGGYYDLLNCTFEK 291 (318)
Q Consensus 276 ~I~G~vYDi~tG~ve~ 291 (318)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 4799999999997653
No 29
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=26.54 E-value=36 Score=28.68 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=11.5
Q ss_pred cEEEEEecCcchH
Q 021041 188 QNILVIGHSDCGG 200 (318)
Q Consensus 188 k~IVV~GHT~CGa 200 (318)
++|+++||++||=
T Consensus 1 rni~~vG~~~~GK 13 (179)
T cd01890 1 RNFSIIAHIDHGK 13 (179)
T ss_pred CcEEEEeecCCCH
Confidence 4799999999993
No 30
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=26.19 E-value=74 Score=29.52 Aligned_cols=32 Identities=22% Similarity=0.331 Sum_probs=22.1
Q ss_pred chhhHHHHHHHhc-CccEEEEEecCcchHHHHHh
Q 021041 173 ETNAALEFAVNTL-EVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 173 ~~~aSLEyAV~~L-~Vk~IVV~GHT~CGav~Aa~ 205 (318)
++.+++++-...+ +.+.|+++|||- ||+-++.
T Consensus 84 d~~~~~~~l~~~~~g~~~i~l~G~S~-Gg~~a~~ 116 (274)
T TIGR03100 84 DIAAAIDAFREAAPHLRRIVAWGLCD-AASAALL 116 (274)
T ss_pred HHHHHHHHHHhhCCCCCcEEEEEECH-HHHHHHH
Confidence 4666777654444 678899999977 6665543
No 31
>PRK14432 acylphosphatase; Provisional
Probab=25.12 E-value=86 Score=25.07 Aligned_cols=20 Identities=15% Similarity=0.100 Sum_probs=17.1
Q ss_pred cEEEEEEEEccCCeEEEEee
Q 021041 275 LFIHGGYYDLLNCTFEKWTL 294 (318)
Q Consensus 275 L~I~G~vYDi~tG~ve~~~~ 294 (318)
+.|+||+.+..+|.|+.+-.
T Consensus 28 lgl~G~V~N~~dG~Vei~~~ 47 (93)
T PRK14432 28 MKLKGFVKNLNDGRVEIVAF 47 (93)
T ss_pred hCCEEEEEECCCCCEEEEEE
Confidence 57999999999998887653
No 32
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=23.84 E-value=76 Score=33.32 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=23.0
Q ss_pred chhhHHHHHHHhcCccEEEEEecCcchHH
Q 021041 173 ETNAALEFAVNTLEVQNILVIGHSDCGGI 201 (318)
Q Consensus 173 ~~~aSLEyAV~~L~Vk~IVV~GHT~CGav 201 (318)
.+..+|++...++|.+.|.++||+-=|.+
T Consensus 247 ~i~~al~~v~~~~g~~kv~lvG~cmGGtl 275 (532)
T TIGR01838 247 GVIAALEVVEAITGEKQVNCVGYCIGGTL 275 (532)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECcCcHH
Confidence 46678888888999999999999544443
No 33
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=23.81 E-value=45 Score=31.76 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=13.4
Q ss_pred ccEEEEEecCcchHHH
Q 021041 187 VQNILVIGHSDCGGIQ 202 (318)
Q Consensus 187 Vk~IVV~GHT~CGav~ 202 (318)
-+-|.|+|||+||=-+
T Consensus 29 GEfvsilGpSGcGKST 44 (248)
T COG1116 29 GEFVAILGPSGCGKST 44 (248)
T ss_pred CCEEEEECCCCCCHHH
Confidence 5789999999999554
No 34
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=23.81 E-value=90 Score=27.26 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=23.2
Q ss_pred hhHHHHHHHhcCccEEEEEecCcchHHHHHh
Q 021041 175 NAALEFAVNTLEVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 175 ~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~ 205 (318)
..-+..-+..++.+.++|+|||--|.+...+
T Consensus 83 ~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~ 113 (288)
T TIGR01250 83 VDELEEVREKLGLDKFYLLGHSWGGMLAQEY 113 (288)
T ss_pred HHHHHHHHHHcCCCcEEEEEeehHHHHHHHH
Confidence 3445555778899999999999888776543
No 35
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.30 E-value=1.3e+02 Score=25.21 Aligned_cols=38 Identities=26% Similarity=0.382 Sum_probs=24.0
Q ss_pred CCCCCceEE-EeccCCCCCCCCCCCcchhhHHHHHHHhcCccEEEEEe
Q 021041 148 GLQPGETFM-IRNVANLVPPLENGPSETNAALEFAVNTLEVQNILVIG 194 (318)
Q Consensus 148 g~~pGD~FV-vRNaGN~V~~~~~~~~~~~aSLEyAV~~L~Vk~IVV~G 194 (318)
+.+|||+++ +-+-||-- .++.++++| +..|.+.|.|.|
T Consensus 100 ~~~~gDvli~iS~SG~s~--------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 100 DIRPGDVLIVISNSGNSP--------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp T--TT-EEEEEESSS-SH--------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred CCCCCCEEEEECCCCCCH--------HHHHHHHHH-HHCCCEEEEEeC
Confidence 478999665 56666653 467888888 567999998865
No 36
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=23.08 E-value=32 Score=26.70 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=13.2
Q ss_pred EEEEEEEEccCCeEE
Q 021041 276 FIHGGYYDLLNCTFE 290 (318)
Q Consensus 276 ~I~G~vYDi~tG~ve 290 (318)
..|||.||+.||+..
T Consensus 61 p~Hg~~fd~~~G~~~ 75 (98)
T cd03528 61 PLHGGRFDLRTGKAL 75 (98)
T ss_pred CCcCCEEECCCCccc
Confidence 589999999999764
No 37
>COG4027 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.69 E-value=56 Score=29.54 Aligned_cols=91 Identities=13% Similarity=0.171 Sum_probs=56.9
Q ss_pred hhhhHHHHhcccccCCCCCCchHHHHHHHHHHHHh---chhcccccchHHHHhhhhcCCCcEEEEeccCCCCChhhhhCC
Q 021041 73 AAALTRDRTSYKVQDGAKSCGGLDYFEEMKQRFLS---FKKNKYFEELEHFQNLAKAQSPKFMVIACADSRVCPSYILGL 149 (318)
Q Consensus 73 ~~~lt~~l~~~~~~~~~~~~~~~~~l~~l~~rF~~---f~~~~~~~~~~~~~~la~gQ~P~~lVItCsDSRV~Pe~i~g~ 149 (318)
.|.+++-+.++.....-..++..+.++.+++||+- |+...|.-.|+....|...|.-.+.+.=---+|-.-+.+++.
T Consensus 77 ~p~fs~v~v~KakVRN~Rv~eiy~~ie~~rAr~RL~v~w~~~~~~~rpg~~~~L~~npd~D~~f~~G~g~~k~~~l~~~~ 156 (194)
T COG4027 77 MPSFSAVLVTKAKVRNMRVDEIYDNIEDIRARFRLGVAWRRSAYELRPGNVEGLEENPDYDIYFAWGEGFRKNMELLLEE 156 (194)
T ss_pred CCchHHHHhhHHHhhheeHHHHHHHHHhhhhheeeeeeeeccccccCCCCccCcccCCCccEEEEecccHHHHHHHHhcc
Confidence 34455555444222222236777888999999864 343344444444445555565555555555677777888898
Q ss_pred CCCc-eEEEeccCCC
Q 021041 150 QPGE-TFMIRNVANL 163 (318)
Q Consensus 150 ~pGD-~FVvRNaGN~ 163 (318)
.||+ +|+.|--||.
T Consensus 157 ~pggaal~lrk~gn~ 171 (194)
T COG4027 157 DPGGAALVLRKTGNE 171 (194)
T ss_pred CCCceEEEEEccCCE
Confidence 8876 7999999994
No 38
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.54 E-value=44 Score=27.65 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=11.6
Q ss_pred EEEEEecCcchHHH
Q 021041 189 NILVIGHSDCGGIQ 202 (318)
Q Consensus 189 ~IVV~GHT~CGav~ 202 (318)
+|+|+||.+||=-.
T Consensus 1 ~i~~vG~~~~GKst 14 (167)
T cd04160 1 SVLILGLDNAGKTT 14 (167)
T ss_pred CEEEEecCCCCHHH
Confidence 48999999999544
No 39
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=22.50 E-value=96 Score=25.67 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=24.4
Q ss_pred chhhHHHHHHHhcCccEEEEEecCcchHHHH
Q 021041 173 ETNAALEFAVNTLEVQNILVIGHSDCGGIQA 203 (318)
Q Consensus 173 ~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~A 203 (318)
+....|.-.++.++.+.|+|+|||-=|.+..
T Consensus 51 ~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~ 81 (228)
T PF12697_consen 51 DYAEDLAELLDALGIKKVILVGHSMGGMIAL 81 (228)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEETHHHHHHH
T ss_pred hhhhhhhhccccccccccccccccccccccc
Confidence 3456677788999999999999998666554
No 40
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=22.24 E-value=85 Score=26.67 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=25.9
Q ss_pred cchhhHHHHHHHhcCccEEEEEecCcchHHHH
Q 021041 172 SETNAALEFAVNTLEVQNILVIGHSDCGGIQA 203 (318)
Q Consensus 172 ~~~~aSLEyAV~~L~Vk~IVV~GHT~CGav~A 203 (318)
.+....+++-.++|+++.|.++|||- |+.-+
T Consensus 28 ~~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 28 DDLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 46778999999999999999999976 55554
No 41
>PRK03592 haloalkane dehalogenase; Provisional
Probab=22.13 E-value=92 Score=28.59 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=25.1
Q ss_pred hhHHHHHHHhcCccEEEEEecCcchHHHHHhh
Q 021041 175 NAALEFAVNTLEVQNILVIGHSDCGGIQALMR 206 (318)
Q Consensus 175 ~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~~ 206 (318)
..-+.--+..|+.+.++|+|||-.|.+...+.
T Consensus 80 a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a 111 (295)
T PRK03592 80 ARYLDAWFDALGLDDVVLVGHDWGSALGFDWA 111 (295)
T ss_pred HHHHHHHHHHhCCCCeEEEEECHHHHHHHHHH
Confidence 34455567889999999999999998876543
No 42
>PRK14445 acylphosphatase; Provisional
Probab=21.87 E-value=1.3e+02 Score=23.74 Aligned_cols=21 Identities=24% Similarity=0.055 Sum_probs=17.5
Q ss_pred ccEEEEEEEEccCCeEEEEee
Q 021041 274 LLFIHGGYYDLLNCTFEKWTL 294 (318)
Q Consensus 274 ~L~I~G~vYDi~tG~ve~~~~ 294 (318)
++.|.||+.+..+|.|+..-.
T Consensus 29 ~~gl~G~V~N~~dG~Vei~~q 49 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIEAQ 49 (91)
T ss_pred hCCCEEEEEECCCCeEEEEEE
Confidence 468999999999998886554
No 43
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=21.74 E-value=31 Score=26.87 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.0
Q ss_pred EEEEEEEEccCCeEE
Q 021041 276 FIHGGYYDLLNCTFE 290 (318)
Q Consensus 276 ~I~G~vYDi~tG~ve 290 (318)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 489999999999754
No 44
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=21.71 E-value=55 Score=30.87 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.6
Q ss_pred ccEEEEEecCcchHHH
Q 021041 187 VQNILVIGHSDCGGIQ 202 (318)
Q Consensus 187 Vk~IVV~GHT~CGav~ 202 (318)
.++|.|+||.+||=.+
T Consensus 2 ~Rni~ivGh~~~GKTT 17 (267)
T cd04169 2 RRTFAIISHPDAGKTT 17 (267)
T ss_pred ccEEEEEcCCCCCHHH
Confidence 5899999999999544
No 45
>PRK14423 acylphosphatase; Provisional
Probab=21.35 E-value=1.3e+02 Score=23.81 Aligned_cols=21 Identities=19% Similarity=-0.043 Sum_probs=17.7
Q ss_pred ccEEEEEEEEccCCeEEEEee
Q 021041 274 LLFIHGGYYDLLNCTFEKWTL 294 (318)
Q Consensus 274 ~L~I~G~vYDi~tG~ve~~~~ 294 (318)
++.|.||+.+..+|.|+.+..
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~~ 50 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVFE 50 (92)
T ss_pred HcCCEEEEEECCCCeEEEEEE
Confidence 368999999999999887654
No 46
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=21.25 E-value=57 Score=26.87 Aligned_cols=15 Identities=33% Similarity=0.561 Sum_probs=12.2
Q ss_pred cEEEEEecCcchHHH
Q 021041 188 QNILVIGHSDCGGIQ 202 (318)
Q Consensus 188 k~IVV~GHT~CGav~ 202 (318)
+.|+|+||++||=-.
T Consensus 1 ~~i~iiG~~~~GKts 15 (168)
T cd01887 1 PVVTVMGHVDHGKTT 15 (168)
T ss_pred CEEEEEecCCCCHHH
Confidence 469999999999443
No 47
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=21.06 E-value=52 Score=27.74 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=15.1
Q ss_pred EEEEEEEEccCCeEEEE
Q 021041 276 FIHGGYYDLLNCTFEKW 292 (318)
Q Consensus 276 ~I~G~vYDi~tG~ve~~ 292 (318)
..|||-||+.||++..+
T Consensus 77 p~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 77 WYHGWTYRLDDGKLVTI 93 (136)
T ss_pred cCCccEEeCCCccEEEc
Confidence 48999999999998765
No 48
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=21.05 E-value=60 Score=28.31 Aligned_cols=17 Identities=12% Similarity=0.427 Sum_probs=14.1
Q ss_pred CccEEEEEecCcchHHH
Q 021041 186 EVQNILVIGHSDCGGIQ 202 (318)
Q Consensus 186 ~Vk~IVV~GHT~CGav~ 202 (318)
++..|+|+||++||=-.
T Consensus 40 ~~~~I~iiG~~g~GKSt 56 (204)
T cd01878 40 GIPTVALVGYTNAGKST 56 (204)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 46899999999999443
No 49
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=20.88 E-value=98 Score=28.38 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=23.1
Q ss_pred hhHHHHHHHhcCccEEEEEecCcchHHHHHh
Q 021041 175 NAALEFAVNTLEVQNILVIGHSDCGGIQALM 205 (318)
Q Consensus 175 ~aSLEyAV~~L~Vk~IVV~GHT~CGav~Aa~ 205 (318)
...|.-.+..++.+.++++|||-.|.+...+
T Consensus 89 a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~ 119 (294)
T PLN02824 89 GEQLNDFCSDVVGDPAFVICNSVGGVVGLQA 119 (294)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCHHHHHHHHH
Confidence 3444445667889999999999888777543
No 50
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.87 E-value=51 Score=29.35 Aligned_cols=15 Identities=27% Similarity=0.539 Sum_probs=12.2
Q ss_pred cEEEEEecCcchHHH
Q 021041 188 QNILVIGHSDCGGIQ 202 (318)
Q Consensus 188 k~IVV~GHT~CGav~ 202 (318)
++|+|+||.++|=..
T Consensus 1 rnv~iiG~~~~GKTt 15 (213)
T cd04167 1 RNVAIAGHLHHGKTS 15 (213)
T ss_pred CcEEEEcCCCCCHHH
Confidence 479999999999443
Done!