Query 021042
Match_columns 318
No_of_seqs 235 out of 1120
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 11:53:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021042.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021042hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dwd_A ADP-ribosylation factor 100.0 3.9E-44 1.3E-48 309.0 11.6 120 3-122 25-145 (147)
2 3sub_A ADP-ribosylation factor 100.0 2.3E-41 8E-46 295.7 12.0 126 2-128 7-133 (163)
3 2owa_A Arfgap-like finger doma 100.0 3.3E-41 1.1E-45 288.8 10.3 113 4-116 24-137 (138)
4 2crw_A ARF GAP 3, ADP-ribosyla 100.0 1.3E-40 4.5E-45 288.3 10.8 113 3-116 16-129 (149)
5 2p57_A GTPase-activating prote 100.0 2.9E-40 1E-44 284.4 10.4 114 3-117 24-138 (144)
6 2olm_A Nucleoporin-like protei 100.0 6.3E-37 2.2E-41 262.9 11.5 120 3-126 12-131 (140)
7 2iqj_A Stromal membrane-associ 100.0 8.4E-37 2.9E-41 260.4 9.9 115 4-124 15-129 (134)
8 2crr_A Stromal membrane-associ 100.0 1.1E-36 3.9E-41 261.6 10.2 116 3-124 16-131 (141)
9 3o47_A ADP-ribosylation factor 100.0 3.8E-34 1.3E-38 271.6 12.4 122 3-124 24-146 (329)
10 3jue_A Arfgap with coiled-coil 100.0 1.7E-31 5.7E-36 258.1 11.4 118 5-124 34-151 (368)
11 3lju_X ARF-GAP with dual PH do 100.0 4.8E-31 1.6E-35 257.5 11.3 117 3-124 21-138 (386)
12 2b0o_E UPLC1; arfgap, structur 100.0 1.6E-28 5.6E-33 228.8 12.3 119 3-123 29-147 (301)
13 1dcq_A PYK2-associated protein 100.0 8.9E-29 3.1E-33 227.8 10.3 119 3-123 4-122 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 3.9E-28 1.3E-32 239.6 9.1 120 3-124 10-129 (497)
15 1gnf_A Transcription factor GA 87.9 0.35 1.2E-05 33.7 2.8 38 15-52 3-41 (46)
16 2vut_I AREA, nitrogen regulato 87.7 0.37 1.3E-05 33.1 2.8 36 17-52 2-38 (43)
17 1u5k_A Hypothetical protein; O 86.4 0.95 3.3E-05 40.4 5.6 48 13-76 147-194 (244)
18 3dfx_A Trans-acting T-cell-spe 84.5 0.53 1.8E-05 34.9 2.4 40 13-52 4-44 (63)
19 4gat_A Nitrogen regulatory pro 82.8 0.97 3.3E-05 33.7 3.3 39 14-52 7-46 (66)
20 4hc9_A Trans-acting T-cell-spe 75.1 1.5 5.2E-05 35.8 2.5 37 16-52 5-42 (115)
21 1ffk_W Ribosomal protein L37AE 72.9 2.7 9.3E-05 31.9 3.2 41 3-45 13-54 (73)
22 2kae_A GATA-type transcription 67.8 1.4 4.9E-05 33.2 0.7 38 14-52 6-46 (71)
23 4hc9_A Trans-acting T-cell-spe 60.7 7.1 0.00024 31.8 3.6 39 14-52 57-96 (115)
24 3k7a_M Transcription initiatio 53.8 4.9 0.00017 38.0 1.8 47 1-47 1-53 (345)
25 1vq8_Z 50S ribosomal protein L 52.7 5.2 0.00018 30.9 1.5 41 3-45 13-54 (83)
26 3g9m_A Glucocorticoid receptor 51.1 8.5 0.00029 29.8 2.5 30 15-47 1-30 (90)
27 3cc2_Z 50S ribosomal protein L 48.9 4.4 0.00015 33.4 0.5 41 3-45 46-87 (116)
28 1hcq_A Protein (estrogen recep 47.4 12 0.00041 28.7 2.8 31 14-47 2-32 (84)
29 1tjl_A DNAK suppressor protein 47.3 6.4 0.00022 33.5 1.3 35 13-47 108-143 (151)
30 2a66_A Orphan nuclear receptor 46.3 9.6 0.00033 30.9 2.2 34 11-47 4-37 (113)
31 1r4i_A Androgen receptor; AR, 45.1 12 0.0004 30.0 2.4 32 13-47 4-35 (105)
32 1d4u_A Nucleotide excision rep 43.9 5.8 0.0002 32.3 0.5 32 15-46 4-36 (111)
33 2han_B Ecdysone receptor; tran 43.6 15 0.0005 30.0 2.9 30 15-47 7-36 (119)
34 3j21_i 50S ribosomal protein L 42.3 13 0.00044 28.9 2.2 40 3-44 21-61 (83)
35 2ebl_A COUP transcription fact 41.5 14 0.00048 28.7 2.3 31 14-47 5-35 (89)
36 1dl6_A Transcription factor II 41.3 12 0.00041 26.7 1.8 29 17-46 12-40 (58)
37 2han_A Protein ultraspiracle; 41.0 15 0.00052 28.7 2.5 30 15-47 9-38 (93)
38 2kgo_A Uncharacterized protein 40.5 3.5 0.00012 33.5 -1.3 32 16-47 56-88 (108)
39 1x58_A Hypothetical protein 49 40.5 17 0.00058 26.7 2.5 27 62-89 9-39 (62)
40 3izc_m 60S ribosomal protein R 40.3 17 0.00058 28.7 2.7 40 3-44 22-62 (92)
41 2nll_B Protein (thyroid hormon 40.2 12 0.0004 29.9 1.7 28 17-47 2-29 (103)
42 1cit_A NGFI-B, protein (orphan 36.3 23 0.0008 27.3 2.9 27 18-47 2-28 (89)
43 1dsz_A RAR-alpha, retinoic aci 35.7 16 0.00053 28.1 1.8 28 17-47 5-32 (86)
44 3iz5_m 60S ribosomal protein L 35.6 18 0.0006 28.6 2.1 40 3-44 22-62 (92)
45 1a6y_A Orphan nuclear receptor 35.5 19 0.00066 28.1 2.3 30 15-47 6-35 (94)
46 1ynw_B Retinoic acid receptor 34.6 14 0.00049 29.2 1.4 29 16-47 3-31 (99)
47 1lo1_A Steroid hormone recepto 33.9 13 0.00045 29.3 1.1 29 16-47 4-32 (98)
48 1kb2_A Vitamin D3 receptor; VD 33.7 16 0.00054 29.4 1.6 30 15-47 5-34 (110)
49 3iz6_N 40S ribosomal protein S 33.5 24 0.00081 25.4 2.3 39 14-57 16-54 (56)
50 4bbr_M Transcription initiatio 31.3 23 0.00078 33.6 2.5 28 18-45 23-51 (345)
51 3jyw_9 60S ribosomal protein L 30.1 12 0.00042 28.2 0.3 39 4-44 13-52 (72)
52 3dzy_D Peroxisome proliferator 28.8 26 0.00089 33.9 2.4 30 15-47 49-78 (419)
53 1dsz_B RXR-alpha, retinoic aci 27.7 16 0.00054 28.1 0.5 30 15-47 4-33 (85)
54 2uzg_A Ubiquitin carboxyl-term 27.1 25 0.00086 27.4 1.6 26 15-40 24-52 (97)
55 4a17_Y RPL37A, 60S ribosomal p 27.0 17 0.00059 29.3 0.6 41 3-45 22-63 (103)
56 3j21_g 50S ribosomal protein L 25.7 14 0.00048 26.1 -0.1 25 15-45 13-37 (51)
57 4hn5_A Glucocorticoid receptor 25.3 36 0.0012 27.7 2.3 32 13-47 26-57 (117)
58 3cbb_A HNF-4-alpha, hepatocyte 25.1 29 0.00098 26.1 1.6 27 18-47 2-28 (78)
59 3j21_d 50S ribosomal protein L 23.7 26 0.00088 27.4 1.1 31 13-44 30-77 (89)
60 3c5k_A HD6, histone deacetylas 23.6 54 0.0019 26.1 3.0 25 16-40 24-48 (109)
61 1pft_A TFIIB, PFTFIIBN; N-term 22.5 32 0.0011 23.2 1.3 29 16-45 5-33 (50)
62 3k1f_M Transcription initiatio 21.1 54 0.0019 29.0 2.7 29 18-46 23-52 (197)
63 2ida_A Hypothetical protein; z 20.3 16 0.00056 29.1 -0.7 30 13-46 15-44 (102)
64 3fbi_A Mediator of RNA polymer 20.2 40 0.0014 26.1 1.5 11 241-251 73-83 (84)
No 1
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.9e-44 Score=309.00 Aligned_cols=120 Identities=48% Similarity=0.994 Sum_probs=108.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
++++|++|++.|+|++|+||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||+.|+.+||.++|+
T Consensus 25 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~an~ 104 (147)
T 3dwd_A 25 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 104 (147)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCCCCChhhhccchHHHHHHHHHHHHHcCCCCCC
Q 021042 83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRD 122 (318)
Q Consensus 83 ~~e~~~-~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~ 122 (318)
||++++ +++..+|++||++++|.+||++|++++|||+|..
T Consensus 105 ~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 105 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 999875 4567899999999999999999999999999985
No 2
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=2.3e-41 Score=295.69 Aligned_cols=126 Identities=40% Similarity=0.743 Sum_probs=115.9
Q ss_pred hHHHHHHHHhcC-CCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHH
Q 021042 2 AATRRLRDLQSQ-PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERL 80 (318)
Q Consensus 2 ~a~~~L~~L~~~-p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~ 80 (318)
++.++|++|++. |+|++|+||++++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++
T Consensus 7 ~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN~~a 86 (163)
T 3sub_A 7 AAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGNKKC 86 (163)
T ss_dssp HHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCHHHH
Confidence 478899999875 8999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCcchhh
Q 021042 81 NTFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVVKE 128 (318)
Q Consensus 81 n~~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p~~~e 128 (318)
|+||++++.+. ..++.||++++|.+||++|+++++|++...+.++.|
T Consensus 87 n~~~e~~g~~~-~~p~~KY~s~aA~~Yr~~L~~~v~~~~~p~~~~~~~ 133 (163)
T 3sub_A 87 QTYLENYGISD-FIPERKYRTKAADHYRKILRSIVHNVDPPAPLPLDE 133 (163)
T ss_dssp HHHHHHTTCTT-SCHHHHTTBHHHHHHHHHHHHHHTTCCCCCCCCGGG
T ss_pred HHHHHHcCCcc-cChhhcCCCHHHHHHHHHHHHHHcCCCCCCCCcccc
Confidence 99999998864 345789999999999999999999987766666544
No 3
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=3.3e-41 Score=288.82 Aligned_cols=113 Identities=34% Similarity=0.722 Sum_probs=107.7
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 021042 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (318)
Q Consensus 4 ~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~~ 83 (318)
+++|+.|++.|+|++|+|||+++|+|||++||||||++|+|+||.||+||||||||+||.|+++||++|+.+||..+|+|
T Consensus 24 ~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an~~ 103 (138)
T 2owa_A 24 DNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRARNY 103 (138)
T ss_dssp HHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHHHH
Confidence 44566699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhh-cCCCCCCChhhhccchHHHHHHHHHHHHHc
Q 021042 84 LSQ-YGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (318)
Q Consensus 84 ~e~-~~~~~~~~i~~KY~s~aa~~yr~~L~a~~e 116 (318)
|++ +++.+..++++||++.++..||++|.++++
T Consensus 104 ~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL~~~~~ 137 (138)
T 2owa_A 104 FKQVLGVNFSPKTKEYASSICGRQYKQILDSEIS 137 (138)
T ss_dssp HHHHTCTTCCGGGCHHHHSHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCCCHHHHHhhHHHHHHHHHHHHHHh
Confidence 998 888888899999999999999999998875
No 4
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=288.29 Aligned_cols=113 Identities=48% Similarity=0.977 Sum_probs=107.6
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~-Ws~eel~~m~~gGN~~~n 81 (318)
..++|++|++.|+|++|+||++++|+|||++||||||++|+||||.||+||||||||+||. |+++||++|+.+||.++|
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an 95 (149)
T 2crw_A 16 ILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASAS 95 (149)
T ss_dssp HHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHc
Q 021042 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAE 116 (318)
Q Consensus 82 ~~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~e 116 (318)
+||++++.+ ..+|++||+++++++||++|+++++
T Consensus 96 ~~~e~~~~~-~~~i~~KY~s~~a~~Yr~~l~~~~~ 129 (149)
T 2crw_A 96 SFFHQHGCS-TNDTNAKYNSRAAQLYREKIKSLAS 129 (149)
T ss_dssp HHHHHHCCC-CCCHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-CcchhhCcCcHHHHHHHHHHHHHHH
Confidence 999998876 5789999999999999999998765
No 5
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=2.9e-40 Score=284.39 Aligned_cols=114 Identities=46% Similarity=0.941 Sum_probs=107.9
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCC-CCHHHHHHHHhcChHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDS-WSEIQIKKMEAGGNERLN 81 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~-Ws~eel~~m~~gGN~~~n 81 (318)
.+++|+.|++.|+|++|+|||+++|+|||++||||||++|+||||.||+|||+||||+||. |+++||++|+.+||.++|
T Consensus 24 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an 103 (144)
T 2p57_A 24 IQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANAT 103 (144)
T ss_dssp HHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHH
Confidence 4677888999999999999999999999999999999999999999999999999999996 999999999999999999
Q ss_pred HHHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcC
Q 021042 82 TFLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEG 117 (318)
Q Consensus 82 ~~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~eg 117 (318)
+||++++.+. .+|++||++++|.+||++|+++++.
T Consensus 104 ~~~e~~g~~~-~~~~~KY~s~aA~~Yr~~l~~~~~~ 138 (144)
T 2p57_A 104 AFFRQHGCTA-NDANTKYNSRAAQMYREKIRQLGSA 138 (144)
T ss_dssp HHHHHTTCCC-CSHHHHHTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCC-CchhhccCcHHHHHHHHHHHHHHHH
Confidence 9999998875 4899999999999999999988763
No 6
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=6.3e-37 Score=262.94 Aligned_cols=120 Identities=27% Similarity=0.515 Sum_probs=103.4
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
..++|++|++.|+|++|+|||+++|+|||++||||||++|+||||.||+| |+||||+||.|+++||++|+.+||..+|+
T Consensus 12 ~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~~~GN~~an~ 90 (140)
T 2olm_A 12 HLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQKHGNEVCKQ 90 (140)
T ss_dssp HHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHHHhccHHHHH
Confidence 45789999999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCcch
Q 021042 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPPVV 126 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p~~ 126 (318)
|||++..+..... .+......++++|+++|+.+.|+.++..
T Consensus 91 ~~e~~~~~~~~~~---P~~~d~~~~~~fIr~KYe~k~f~~~~~~ 131 (140)
T 2olm_A 91 IWLGLFDDRSSAI---PDFRDPQKVKEFLQEKYEKKRWYVPPEQ 131 (140)
T ss_dssp HHTTTCCTTTSCC---CCTTCHHHHHHHHHHHHTSCTTCCCHHH
T ss_pred HHHhhCCcccCCC---CCCCCHHHHHHHHHHHHcCCeeeCCccc
Confidence 9997543222111 1222235688999999999999987643
No 7
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.4e-37 Score=260.44 Aligned_cols=115 Identities=37% Similarity=0.664 Sum_probs=100.1
Q ss_pred HHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHH
Q 021042 4 TRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTF 83 (318)
Q Consensus 4 ~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~~ 83 (318)
+++|++|++.|+|+.|+|||+++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||..+|+|
T Consensus 15 ~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~~ 94 (134)
T 2iqj_A 15 QAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCMQEMGNGKANRL 94 (134)
T ss_dssp HHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHHHHHchHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCc
Q 021042 84 LSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 84 ~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p 124 (318)
||++. +... . +-.. ....+++|+++|+.+.|+.+.
T Consensus 95 ~e~~l-p~~~-~--~P~~--~~~~e~fIr~KY~~k~f~~~~ 129 (134)
T 2iqj_A 95 YEAYL-PETF-R--RPQI--DPAVEGFIRDKYEKKKYMDRS 129 (134)
T ss_dssp HTTTC-CSSC-C--CCCS--HHHHHHHHHHHHTSCTTCCTT
T ss_pred HHhcC-CccC-C--CCCc--hHHHHHHHHHHHhCCeeeCCc
Confidence 99653 3211 0 1111 124578999999999999753
No 8
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=261.62 Aligned_cols=116 Identities=34% Similarity=0.564 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
.+++|++|++.|+|++|+|||+++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||..+|+
T Consensus 16 ~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~~GN~~an~ 95 (141)
T 2crr_A 16 HQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQDMGNTKARL 95 (141)
T ss_dssp HHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHHHccHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCc
Q 021042 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p 124 (318)
|||++..+ .. . +-.. ....+++|+++|+.+.|+.+.
T Consensus 96 ~~e~~lp~-~~-~--~P~~--~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 96 LYEANLPE-NF-R--RPQT--DQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp HGGGSCCT-TC-C--CCCS--HHHHHHHHHHHHTSCTTCCCG
T ss_pred HHHhcCCc-cc-C--CCCc--hHHHHHHHHHHHhcCcccCCC
Confidence 99976322 11 0 1111 124567999999999999754
No 9
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=271.56 Aligned_cols=122 Identities=48% Similarity=0.978 Sum_probs=115.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
.+++|++|++.|+|+.|+|||+++|+|||++||||||++|+|+||.||+|||+||||+||.|+++||++|+.+||.++|+
T Consensus 24 ~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~~~n~ 103 (329)
T 3o47_A 24 TRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAKFRE 103 (329)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcC-CCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCc
Q 021042 83 FLSQYG-IPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 83 ~~e~~~-~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p 124 (318)
||++++ ......+.++|.+.++..|+++|..+.+++.|...+
T Consensus 104 ~~e~~~~~~~~~~i~~~y~s~~A~lYr~kl~~~~~~~~~~~~~ 146 (329)
T 3o47_A 104 FLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSLES 146 (329)
T ss_dssp HHHTCSSCCTTCCHHHHHHSHHHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHhcCCCCCCCCccccccchHHHHHhhhccccccCCcccccc
Confidence 999875 445678999999999999999999999999998754
No 10
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.97 E-value=1.7e-31 Score=258.06 Aligned_cols=118 Identities=32% Similarity=0.500 Sum_probs=98.8
Q ss_pred HHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHHHH
Q 021042 5 RRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNTFL 84 (318)
Q Consensus 5 ~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~~~ 84 (318)
++|+.|++.|+|++|+||++++|+|||++||||||++|+||||.||+|||+||||+||.|+++||++|+.+||..+|+||
T Consensus 34 ~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~~~gn~~~n~~~ 113 (368)
T 3jue_A 34 HVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMCELGNVIINQIY 113 (368)
T ss_dssp CHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHHHHccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCc
Q 021042 85 SQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 85 e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p 124 (318)
|....+... .+...... .....++|+++|+.+.|....
T Consensus 114 e~~~~~~~~-~kp~~~~~-~~~re~fIr~KY~~k~f~~~l 151 (368)
T 3jue_A 114 EARVEAMAV-KKPGPSCS-RQEKEAWIHAKYVEKKFLTKL 151 (368)
T ss_dssp TTTTTTTTC-CCCCTTSC-HHHHHHHHHHHHTSCTTCCSC
T ss_pred HhhcccccC-cCCCCCCC-HHHHHHHHHHHHHhhcccccc
Confidence 965321110 00001111 123456899999999998754
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.97 E-value=4.8e-31 Score=257.48 Aligned_cols=117 Identities=32% Similarity=0.613 Sum_probs=99.7
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
.+++|++|++.|+|+.|+|||+++|+|||++||||||++||||||.| +|||+||||+||.|+++||++|+.+||..+|+
T Consensus 21 ~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~~gN~~~~~ 99 (386)
T 3lju_X 21 RRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMASHGNDAARA 99 (386)
T ss_dssp HHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHHhcchHHHH
Confidence 57899999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchH-HHHHHHHHHHHHcCCCCCCCc
Q 021042 83 FLSQYGIPKETDIVTKYNTNA-ASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~a-a~~yr~~L~a~~egr~w~~~p 124 (318)
|||++. +... . |..... ...-.++|+++|+.+.|+.++
T Consensus 100 ~~e~~~-~~~~-~--~p~~~~~~~~~e~fIr~KY~~~~f~~~~ 138 (386)
T 3lju_X 100 RFESKV-PSFY-Y--RPTPSDCQLLREQWIRAKYERQEFIYPE 138 (386)
T ss_dssp HHTTTC-CTTS-C--CCCTTSCHHHHHHHHHHHHTSCTTTSGG
T ss_pred HHhccC-CccC-C--CCCCccchHHHHHEHHhhhCCCEEECCc
Confidence 999653 2211 0 111111 122335899999999999865
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=228.77 Aligned_cols=119 Identities=28% Similarity=0.489 Sum_probs=98.0
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
++++|++|++.|+|++|+|||+++|+|||++||||||++|+|+||.||+|||+|||++||.|++++|.+|+.+||..+|+
T Consensus 29 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~~GN~~~n~ 108 (301)
T 2b0o_E 29 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 108 (301)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHHcCCHHHHH
Confidence 57789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 021042 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~ 123 (318)
+||... +.....+.. .........++|.++|+.+.|..+
T Consensus 109 i~E~~l-~~~~~~kP~-~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 109 VMEAQL-PSHGGPKPS-AESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp HHTTTC-CSSSCSCCC-TTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred HHHHhh-hhccCCCCC-CcccHHHHHHHHHHHHHhhhhhcc
Confidence 998543 221000000 111223455678888888877654
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.95 E-value=8.9e-29 Score=227.79 Aligned_cols=119 Identities=29% Similarity=0.538 Sum_probs=100.3
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
++++|++|++.|+|+.|+|||+++|+|+|++||||||++|+|+||.||+|||+|||++||.|+.++|..|+.+||..+|+
T Consensus 4 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~n~ 83 (278)
T 1dcq_A 4 TKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGFNE 83 (278)
T ss_dssp HHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHHHH
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCC
Q 021042 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDP 123 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~ 123 (318)
||+... +.....+..+.+. .....++|+++|..+.|..+
T Consensus 84 i~e~~l-~~~~~~kP~~~s~-~~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 84 IMECCL-PSEDPVKPNPGSD-MIARKDYITAKYMERRYARK 122 (278)
T ss_dssp HHTTTC-CSSSCCSCCTTCC-HHHHHHHHHHHHTTCTTSCC
T ss_pred HHHhhC-ChhhcCCCCCCCC-HHHHHHHHHHHHHHhhcccc
Confidence 998643 2221111112222 13456788999988888764
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=3.9e-28 Score=239.61 Aligned_cols=120 Identities=27% Similarity=0.442 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcChHHHHH
Q 021042 3 ATRRLRDLQSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNERLNT 82 (318)
Q Consensus 3 a~~~L~~L~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gGN~~~n~ 82 (318)
.+++|+.|++.|+|+.|+|||+++|+|+|+++|||||++|+|+||.||+|||+|||++||.|++++++.|+.+||..+|+
T Consensus 10 ~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~GN~~an~ 89 (497)
T 3lvq_E 10 TKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNMGNTSFNE 89 (497)
T ss_dssp HHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTCCHHHHHH
T ss_pred HHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHHhhHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCChhhhccchHHHHHHHHHHHHHcCCCCCCCc
Q 021042 83 FLSQYGIPKETDIVTKYNTNAASIYRDRIQAIAEGRPWRDPP 124 (318)
Q Consensus 83 ~~e~~~~~~~~~i~~KY~s~aa~~yr~~L~a~~egr~w~~~p 124 (318)
+|+..-.+... .+... .......+++|+++|+.+.|..+.
T Consensus 90 i~E~~lp~~~~-~kP~~-~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 90 VMEAQLPSHGG-PKPSA-ESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp HHTTTCCSSSC-SCCCT-TCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHhhcccccC-CCCCC-cCcHHHHHHHHHHHhhcccccccc
Confidence 99854322111 11111 111234566888888888887643
No 15
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=87.94 E-value=0.35 Score=33.67 Aligned_cols=38 Identities=26% Similarity=0.677 Sum_probs=33.1
Q ss_pred CCCCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 15 GNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 15 ~Nk~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
..+.|.+|+. .-|.|=.-..|..||-.|.-.++..|++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 5689999999 5789999999999999999988877665
No 16
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=87.71 E-value=0.37 Score=33.08 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=30.5
Q ss_pred CCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 17 KICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 17 k~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
+.|.+|+. .-|.|=.-..|-.||-.|.-..+..|++
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCCC
Confidence 57999999 5789999999999999999877765553
No 17
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=86.39 E-value=0.95 Score=40.44 Aligned_cols=48 Identities=15% Similarity=0.422 Sum_probs=36.6
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCcccceeecccCCCCHHHHHHHHhcC
Q 021042 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGG 76 (318)
Q Consensus 13 ~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~VrSitmD~Ws~eel~~m~~gG 76 (318)
.|.=..|+.||.+...+.++..|.++|..|...+ ..+.+++..|+..-
T Consensus 147 ~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~ 194 (244)
T 1u5k_A 147 IPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAV 194 (244)
T ss_dssp CCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTT
T ss_pred CCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHH
Confidence 3455789999999677889999999999986322 35778888876543
No 18
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=84.49 E-value=0.53 Score=34.87 Aligned_cols=40 Identities=15% Similarity=0.411 Sum_probs=33.8
Q ss_pred CCCCCCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 13 QPGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 13 ~p~Nk~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
......|.+|+. .-|.|=.-..|-.||-.|.-.++..|++
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~~ 44 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 44 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSSC
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCCC
Confidence 456789999999 5789999999999999999887776653
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=82.80 E-value=0.97 Score=33.69 Aligned_cols=39 Identities=26% Similarity=0.531 Sum_probs=33.2
Q ss_pred CCCCCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 14 p~Nk~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
.....|++|+. .-|.|-.-..|-.||-.|.-.++..|++
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~~ 46 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGVV 46 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCSC
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCCC
Confidence 45789999998 5899999999999999999887766554
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=75.08 E-value=1.5 Score=35.78 Aligned_cols=37 Identities=27% Similarity=0.719 Sum_probs=30.6
Q ss_pred CCCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 16 NKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 16 Nk~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
-+.|++|++ .-|.|-.-..|-+||-.|.-.++..|++
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 478999998 5899999899999999999877655544
No 21
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=72.87 E-value=2.7 Score=31.90 Aligned_cols=41 Identities=24% Similarity=0.432 Sum_probs=33.5
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
.|+.+++| ........|.-||.....+.. .||+.|..|--.
T Consensus 13 lRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred HHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 57788887 788889999999987666665 599999999653
No 22
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=67.78 E-value=1.4 Score=33.24 Aligned_cols=38 Identities=18% Similarity=0.437 Sum_probs=30.2
Q ss_pred CCCCCccCCCC-CCCCceE--eccceeeehhhhhhhccCCCc
Q 021042 14 PGNKICVDCAQ-KNPQWAS--VSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 14 p~Nk~C~DCga-~~P~WaS--v~~GiFICl~CsgiHR~LGvh 52 (318)
.....|.+|+. .-|.|=. -.-| .||-.|.-.++..+++
T Consensus 6 ~~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 6 KKSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp --CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 35679999999 5789998 5677 8999999888876665
No 23
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=60.66 E-value=7.1 Score=31.76 Aligned_cols=39 Identities=15% Similarity=0.409 Sum_probs=33.2
Q ss_pred CCCCCccCCCC-CCCCceEeccceeeehhhhhhhccCCCc
Q 021042 14 PGNKICVDCAQ-KNPQWASVSYGVFMCLECSGKHRGLGVH 52 (318)
Q Consensus 14 p~Nk~C~DCga-~~P~WaSv~~GiFICl~CsgiHR~LGvh 52 (318)
.....|++|+. .-|.|-.-..|-.||-.|.-.++..+++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 45689999999 5799999999999999999877766665
No 24
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=53.85 E-value=4.9 Score=37.95 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=24.0
Q ss_pred ChHHHHHHHHh---cCCCC--CCccCCCCCCCCc-eEeccceeeehhhhhhhc
Q 021042 1 MAATRRLRDLQ---SQPGN--KICVDCAQKNPQW-ASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 1 m~a~~~L~~L~---~~p~N--k~C~DCga~~P~W-aSv~~GiFICl~CsgiHR 47 (318)
|++|+.+..-. ...-| ..|-+||..+|.- ....-|-.||.+|.-|..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 1 MMTRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp ----------------CCCCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred CccHHHHHhcccccCccccCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 77888776541 11222 3799999975522 245679999999987653
No 25
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=52.71 E-value=5.2 Score=30.88 Aligned_cols=41 Identities=20% Similarity=0.547 Sum_probs=31.1
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
.|+.+++| ......-.|..||... --.+..||+.|..|-..
T Consensus 13 lRk~vk~ie~~q~~~y~Cp~CG~~~--v~r~atGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 13 SRRRVAEIESEMNEDHACPNCGEDR--VDRQGTGIWQCSYCDYK 54 (83)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEE--EEEEETTEEEETTTCCE
T ss_pred HHHHHHHHHHhccccCcCCCCCCcc--eeccCCCeEECCCCCCE
Confidence 56777777 6667788999999843 33455799999999764
No 26
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=51.13 E-value=8.5 Score=29.78 Aligned_cols=30 Identities=27% Similarity=0.786 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
+++.|.-|+.+. ....||++.|..|++..|
T Consensus 1 g~~~C~VCg~~a---~g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEA---SGCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcC---cccccCCccchhHhHHhh
Confidence 478899999754 356899999999999766
No 27
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=48.86 E-value=4.4 Score=33.36 Aligned_cols=41 Identities=20% Similarity=0.552 Sum_probs=30.8
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
.|+.+++| ......-.|..||...... +..||+.|..|--+
T Consensus 46 lRK~vkkiE~~q~akytCPfCGk~~vKR--~avGIW~C~~Cgk~ 87 (116)
T 3cc2_Z 46 SRRRVAEIESEMNEDHACPNCGEDRVDR--QGTGIWQCSYCDYK 87 (116)
T ss_dssp HHHHHHHHHHHHHSCEECSSSCCEEEEE--EETTEEEETTTCCE
T ss_pred HHHHHHHHHHHhccCCcCCCCCCceeEe--cCceeEECCCCCCE
Confidence 56777777 6777888999999754433 34699999999653
No 28
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=47.37 E-value=12 Score=28.69 Aligned_cols=31 Identities=23% Similarity=0.635 Sum_probs=25.7
Q ss_pred CCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 14 p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
.+...|.-|+.+. ....||++.|..|++..|
T Consensus 2 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 32 (84)
T 1hcq_A 2 KETRYCAVCNDYA---SGYHYGVWSCEGCKAFFK 32 (84)
T ss_dssp CCCCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCCcCcEECCCC---CCeeeCccchHHhhhhhh
Confidence 3567899999764 367999999999999887
No 29
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=47.34 E-value=6.4 Score=33.47 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCCCCccCCCCCCCC-ceEeccceeeehhhhhhhc
Q 021042 13 QPGNKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 13 ~p~Nk~C~DCga~~P~-WaSv~~GiFICl~CsgiHR 47 (318)
.+.--.|.|||.+=|. -.-.--++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 3556799999997442 1122235778999998764
No 30
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=46.34 E-value=9.6 Score=30.93 Aligned_cols=34 Identities=24% Similarity=0.646 Sum_probs=24.1
Q ss_pred hcCCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 11 QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 11 ~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
...+.+..|.-||.+. ....||++.|..|++..|
T Consensus 4 ~~~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 37 (113)
T 2a66_A 4 GDEDLEELCPVCGDKV---SGYHYGLLTCESCKGFFK 37 (113)
T ss_dssp ------CBCTTTCCBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCCCcEeCCCC---cceeeCcccHHHHHHHHh
Confidence 3455678899999653 367999999999999887
No 31
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=45.11 E-value=12 Score=30.04 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=25.5
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 13 ~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
.+....|.-||.+. ....||++.|..|++..|
T Consensus 4 ~~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (105)
T 1r4i_A 4 FPPQKTCLICGDEA---SGAHYGALTCGSCKVFFK 35 (105)
T ss_dssp --CCCBCSSSCSBE---EEEETTEEEEHHHHHHHH
T ss_pred CCCCCCCcEeCCCC---CceEeCCcchhhhhhhhc
Confidence 35678899999753 367899999999999887
No 32
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=43.89 E-value=5.8 Score=32.31 Aligned_cols=32 Identities=16% Similarity=0.480 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCC-ceEeccceeeehhhhhhh
Q 021042 15 GNKICVDCAQKNPQ-WASVSYGVFMCLECSGKH 46 (318)
Q Consensus 15 ~Nk~C~DCga~~P~-WaSv~~GiFICl~CsgiH 46 (318)
+...|.+||...-. |..-+|++-||..|....
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~~ 36 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDAD 36 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhcccc
Confidence 45679999985333 345689999999998753
No 33
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=43.60 E-value=15 Score=30.02 Aligned_cols=30 Identities=23% Similarity=0.743 Sum_probs=25.4
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
....|.-||.+. ....||++.|..|++..|
T Consensus 7 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 36 (119)
T 2han_B 7 QEELCLVCGDRA---SGYHYNALTCEGCKGFFR 36 (119)
T ss_dssp CSCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCeEeCCcC---CcceECchhHHhhHHhhh
Confidence 467899999764 367999999999999877
No 34
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.25 E-value=13 Score=28.88 Aligned_cols=40 Identities=23% Similarity=0.579 Sum_probs=29.6
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csg 44 (318)
.|+.+.+| .++.....|.-||...... +..||+-|-.|--
T Consensus 21 lRK~vkkie~~q~~ky~CpfCGk~~vkR--~a~GIW~C~kCg~ 61 (83)
T 3j21_i 21 IRRRVAAVEAKMRQKHTCPVCGRKAVKR--ISTGIWQCQKCGA 61 (83)
T ss_dssp HHHHHHHHHHHHHSCBCCSSSCSSCEEE--EETTEEEETTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCCCceeEe--cCcCeEEcCCCCC
Confidence 45666665 4556678999999986554 4579999999954
No 35
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=41.45 E-value=14 Score=28.65 Aligned_cols=31 Identities=29% Similarity=0.675 Sum_probs=25.8
Q ss_pred CCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 14 p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
+.+..|.-|+.+.- ...||++.|..|++..|
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFK 35 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhh
Confidence 45678999997643 56899999999999887
No 36
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=41.31 E-value=12 Score=26.69 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=21.2
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhhh
Q 021042 17 KICVDCAQKNPQWASVSYGVFMCLECSGKH 46 (318)
Q Consensus 17 k~C~DCga~~P~WaSv~~GiFICl~CsgiH 46 (318)
..|-+|+.... -....-|..||..|--+-
T Consensus 12 ~~Cp~C~~~~l-v~D~~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 12 VTCPNHPDAIL-VEDYRAGDMICPECGLVV 40 (58)
T ss_dssp CSBTTBSSSCC-EECSSSCCEECTTTCCEE
T ss_pred ccCcCCCCCce-eEeCCCCeEEeCCCCCEE
Confidence 47999998653 224467999999996553
No 37
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=40.99 E-value=15 Score=28.65 Aligned_cols=30 Identities=27% Similarity=0.812 Sum_probs=24.8
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
....|.-||.+. ....||++.|..|++..|
T Consensus 9 ~~~~C~VCgd~a---~g~hyGv~sC~aCk~FFR 38 (93)
T 2han_A 9 SKHLCSICGDRA---SGKHYGVYSCEGCKGFFK 38 (93)
T ss_dssp -CCBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCCCcEeCCCC---cCeecCcchhHHHHHHHH
Confidence 457899999764 367999999999999877
No 38
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=40.49 E-value=3.5 Score=33.48 Aligned_cols=32 Identities=25% Similarity=0.579 Sum_probs=21.7
Q ss_pred CCCccCCCCCCCC-ceEeccceeeehhhhhhhc
Q 021042 16 NKICVDCAQKNPQ-WASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 16 Nk~C~DCga~~P~-WaSv~~GiFICl~CsgiHR 47 (318)
--.|.+||.+=|. -.-.--++.+|++|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 5699999997442 1122335778999998654
No 39
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=40.48 E-value=17 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHh----cChHHHHHHHhhcCC
Q 021042 62 DSWSEIQIKKMEA----GGNERLNTFLSQYGI 89 (318)
Q Consensus 62 D~Ws~eel~~m~~----gGN~~~n~~~e~~~~ 89 (318)
-.|++||.+.|.. .|+ .+..++..|..
T Consensus 9 ~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f 39 (62)
T 1x58_A 9 KDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF 39 (62)
T ss_dssp SSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC
Confidence 4899999988865 588 88988876643
No 40
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=40.34 E-value=17 Score=28.69 Aligned_cols=40 Identities=23% Similarity=0.492 Sum_probs=29.5
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csg 44 (318)
.|+.+.+| .++.....|.-||....... ..||+-|-.|.-
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR~--a~GIW~C~~C~~ 62 (92)
T 3izc_m 22 LRRQVKKLEIQQHARYDCSFCGKKTVKRG--AAGIWTCSCCKK 62 (92)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCSSCCEEE--ETTEEECTTTCC
T ss_pred HHHHHHHHHHHHhcCCcCCCCCCceeeec--ccceEEcCCCCC
Confidence 45566665 45567788999998876554 479999999954
No 41
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=40.15 E-value=12 Score=29.86 Aligned_cols=28 Identities=32% Similarity=0.787 Sum_probs=23.3
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 17 k~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
..|.-||.+. ....||++.|..|++..|
T Consensus 2 ~~C~VCgd~a---~g~hyGv~sC~aCk~FFR 29 (103)
T 2nll_B 2 ELCVVCGDKA---TGYHYRCITCEGCKGFFR 29 (103)
T ss_dssp CBCTTTCSBC---CSEETTEECCHHHHHHHH
T ss_pred CCCeEeCCcC---cCeecCcccHHHhhhhhe
Confidence 5799999754 356899999999999877
No 42
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=36.27 E-value=23 Score=27.32 Aligned_cols=27 Identities=30% Similarity=0.715 Sum_probs=22.5
Q ss_pred CccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 18 ~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
.|.-||.+.- ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFK 28 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhce
Confidence 5888987543 57899999999999877
No 43
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=35.71 E-value=16 Score=28.13 Aligned_cols=28 Identities=39% Similarity=0.795 Sum_probs=22.9
Q ss_pred CCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 17 KICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 17 k~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
+.|.-||.+.- ...||++.|..|++..|
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 32 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFR 32 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHH
Confidence 56999997643 56899999999999887
No 44
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=35.64 E-value=18 Score=28.60 Aligned_cols=40 Identities=18% Similarity=0.485 Sum_probs=28.9
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csg 44 (318)
.|+.+.+| .++...-.|.-||...... +..||+-|-.|.-
T Consensus 22 lRK~vkkie~~q~~ky~CpfCgk~~vkR--~a~GIW~C~~Cg~ 62 (92)
T 3iz5_m 22 LRKQIKKMEVSQHSKYFCEFCGKFAVKR--KAVGIWGCKDCGK 62 (92)
T ss_dssp HHHHHHHHHHHHHSCBCCTTTCSSCBEE--EETTEEECSSSCC
T ss_pred HHHHHHHHHHHHhccccCcccCCCeeEe--cCcceEEcCCCCC
Confidence 45556665 4455667999999986555 4579999999954
No 45
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=35.51 E-value=19 Score=28.11 Aligned_cols=30 Identities=30% Similarity=0.675 Sum_probs=23.9
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
....|.-||.+. ....||++.|..|++..|
T Consensus 6 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 6 MVLLCKVCGDVA---SGFHYGVLACEGCKGFFR 35 (94)
T ss_dssp --CBCTTTSSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCcCcEeCCCC---cceEeCccchhhhhhehh
Confidence 356799999754 367899999999999877
No 46
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=34.61 E-value=14 Score=29.17 Aligned_cols=29 Identities=31% Similarity=0.867 Sum_probs=22.9
Q ss_pred CCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 16 Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
...|.-||.+.- ...||++.|..|++..|
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 31 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFK 31 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHH
Confidence 357999997542 56899999999999887
No 47
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=33.91 E-value=13 Score=29.32 Aligned_cols=29 Identities=24% Similarity=0.708 Sum_probs=24.2
Q ss_pred CCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 16 NKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 16 Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
...|.-||.+. ....||++.|..|++..|
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFR 32 (98)
T 1lo1_A 4 KRLCLVCGDIA---SGYHYGVASCEACKAFFK 32 (98)
T ss_dssp CCEETTTTEEC---SEESSSSEECHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeeeCccchhhhhhhhe
Confidence 46799999754 367899999999999887
No 48
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=33.75 E-value=16 Score=29.43 Aligned_cols=30 Identities=23% Similarity=0.639 Sum_probs=23.7
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
....|.-||.+.- ...||++.|..|++..|
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 34 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFR 34 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhe
Confidence 3567999997543 56899999999999877
No 49
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=33.53 E-value=24 Score=25.36 Aligned_cols=39 Identities=26% Similarity=0.699 Sum_probs=28.0
Q ss_pred CCCCCccCCCCCCCCceEeccceeeehhhhhhhccCCCccccee
Q 021042 14 PGNKICVDCAQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVR 57 (318)
Q Consensus 14 p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR~LGvhiS~Vr 57 (318)
++-+.|.-||.+.- .--.||..||-.|- |.+-..|.|||
T Consensus 16 ~g~~rC~vcGr~~g--~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSHG--LIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSCC--CTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCcc--cccccCCcHHHHHH---HHHHHhcCcee
Confidence 36689999998643 22389999998875 55556666765
No 50
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=31.32 E-value=23 Score=33.56 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.5
Q ss_pred CccCCCCCCCCc-eEeccceeeehhhhhh
Q 021042 18 ICVDCAQKNPQW-ASVSYGVFMCLECSGK 45 (318)
Q Consensus 18 ~C~DCga~~P~W-aSv~~GiFICl~Csgi 45 (318)
+|-+|+...|.- ....-|-.||.+|--|
T Consensus 23 ~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred cCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 799999854542 3567899999999743
No 51
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=30.09 E-value=12 Score=28.23 Aligned_cols=39 Identities=23% Similarity=0.482 Sum_probs=27.7
Q ss_pred HHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhh
Q 021042 4 TRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSG 44 (318)
Q Consensus 4 ~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csg 44 (318)
|+.+++| .++.....|.-||...... +..||+-|-.|.-
T Consensus 13 RK~vkkie~~q~~ky~C~fCgk~~vkR--~a~GIW~C~~C~~ 52 (72)
T 3jyw_9 13 RRQVKKLEIQQHARYDCSFCGKKTVKR--GAAGIWTCSCCKK 52 (72)
T ss_dssp HTTTHHHHHHHHSCBCCSSCCSSCBSB--CSSSCBCCSSSCC
T ss_pred HHHHHHHHHHhccCccCCCCCCceeEe--cCCCeEECCCCCC
Confidence 4444554 3455677899999876655 3579999999953
No 52
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=28.76 E-value=26 Score=33.85 Aligned_cols=30 Identities=33% Similarity=0.655 Sum_probs=24.3
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
-+..|.-||.+.- ...|||+.|..|++..|
T Consensus 49 ~~~~C~vC~~~~~---g~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 49 MAIECRVCGDKAS---GFHYGVHACEGCKGFFR 78 (419)
T ss_dssp -CCCCSSSCSCCC---SBCSSSBCCHHHHHHHH
T ss_pred CCCcCeECCCcCC---CCccCcccchhhhHHHc
Confidence 4678999998654 35899999999999776
No 53
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=27.72 E-value=16 Score=28.07 Aligned_cols=30 Identities=30% Similarity=0.826 Sum_probs=24.4
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
.+..|.-||.+.- ...||++.|..|++..|
T Consensus 4 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 33 (85)
T 1dsz_B 4 TKHICAICGDRSS---GKHYGVYSCEGCKGFFK 33 (85)
T ss_dssp CCEECTTTCCEES---SEETTEECCHHHHHHHH
T ss_pred CCCCCCEeCCCCC---ceeeCccchHHHHHHHH
Confidence 4567999997542 46899999999999887
No 54
>2uzg_A Ubiquitin carboxyl-terminal hydrolase 33; UBL conjugation pathway, DE-ubiquitination, alternative splicing, metal-binding, thiol protease; NMR {Homo sapiens} SCOP: g.44.1.5
Probab=27.12 E-value=25 Score=27.39 Aligned_cols=26 Identities=27% Similarity=0.659 Sum_probs=19.5
Q ss_pred CCCCccCCCCCCCC-ceEec--cceeeeh
Q 021042 15 GNKICVDCAQKNPQ-WASVS--YGVFMCL 40 (318)
Q Consensus 15 ~Nk~C~DCga~~P~-WaSv~--~GiFICl 40 (318)
....|.+|++.... |+++. -|-+-|-
T Consensus 24 ~~~~C~~C~~~~~~lw~CL~~~Cg~vgCg 52 (97)
T 2uzg_A 24 SLGTCQDCKVQGPNLWACLENRCSYVGCG 52 (97)
T ss_dssp TTTCCSSSCCCCSSCEEECCTTCCCEECC
T ss_pred CCCcCcCcCCCCCCceeeecccCCCcccC
Confidence 46789999966555 88777 7777774
No 55
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=27.01 E-value=17 Score=29.26 Aligned_cols=41 Identities=15% Similarity=0.378 Sum_probs=29.4
Q ss_pred HHHHHHHH-hcCCCCCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 3 ATRRLRDL-QSQPGNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 3 a~~~L~~L-~~~p~Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
.|+.+.+| .+......|.-||...... ...||+-|-.|.-.
T Consensus 22 lRK~vkkIE~~q~aky~CpfCgk~~vKR--~a~GIW~C~kCg~~ 63 (103)
T 4a17_Y 22 LRKVVKKFEITQHAKYGCPFCGKVAVKR--AAVGIWKCKPCKKI 63 (103)
T ss_dssp HHHHHHHHHHHHHSCEECTTTCCEEEEE--EETTEEEETTTTEE
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCceeee--cCcceEEcCCCCCE
Confidence 45566665 4556677899999876544 35799999999643
No 56
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.74 E-value=14 Score=26.08 Aligned_cols=25 Identities=24% Similarity=0.687 Sum_probs=20.4
Q ss_pred CCCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 15 GNKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 15 ~Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
..++|..|++. +..|++-|..|-..
T Consensus 13 ~k~iCpkC~a~------~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGAT------NPWGAKKCRKCGYK 37 (51)
T ss_dssp SEEECTTTCCE------ECTTCSSCSSSSSC
T ss_pred CCccCCCCCCc------CCCCceecCCCCCc
Confidence 56799999998 44799999998643
No 57
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=25.35 E-value=36 Score=27.68 Aligned_cols=32 Identities=25% Similarity=0.674 Sum_probs=23.6
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 13 ~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
....+.|.-||.+. ....||++.|..|++.-|
T Consensus 26 ~~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 26 NAPPKLCLVCSDEA---SGCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ----CBCTTTCSBC---CEEETTEEECHHHHHHHH
T ss_pred CCCCCcCCcCCCcC---cccccCCcccchhhhhhh
Confidence 34567899999764 356899999999999766
No 58
>3cbb_A HNF-4-alpha, hepatocyte nuclear factor 4-alpha, DNA binding domain, nuclear; zinc finger; 2.00A {Homo sapiens}
Probab=25.12 E-value=29 Score=26.13 Aligned_cols=27 Identities=30% Similarity=0.753 Sum_probs=22.0
Q ss_pred CccCCCCCCCCceEeccceeeehhhhhhhc
Q 021042 18 ICVDCAQKNPQWASVSYGVFMCLECSGKHR 47 (318)
Q Consensus 18 ~C~DCga~~P~WaSv~~GiFICl~CsgiHR 47 (318)
.|.-||.+.- ...||++.|..|++..|
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFR 28 (78)
T 3cbb_A 2 LCAICGDRAT---GKHYGASSCDGCKGFFR 28 (78)
T ss_dssp BCTTTSSBCC---SEETTEECCHHHHHHHH
T ss_pred CCeEeCCCCC---ceEeCCcchhhhceeee
Confidence 4888886543 46899999999999877
No 59
>3j21_d 50S ribosomal protein L34E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.65 E-value=26 Score=27.44 Aligned_cols=31 Identities=19% Similarity=0.475 Sum_probs=20.7
Q ss_pred CCCCCCccCCCCCC-------CC----------ceEeccceeeehhhhh
Q 021042 13 QPGNKICVDCAQKN-------PQ----------WASVSYGVFMCLECSG 44 (318)
Q Consensus 13 ~p~Nk~C~DCga~~-------P~----------WaSv~~GiFICl~Csg 44 (318)
.+.--.|.|||.+- |. -++=.|| .+|-.|..
T Consensus 30 ~~~~pkC~~cg~~L~Gi~~~Rp~~~~rlsK~~KtvsRaYG-~lC~~Cvr 77 (89)
T 3j21_d 30 KPKIAHCAMCGRPLNGIPRGRPVEMRKLPKTKKRPERPMP-HLCPRCMR 77 (89)
T ss_dssp CCCCCBCSSSCCBCTTCCCCCTTGGGGSCHHHHCCSSSCT-TSCHHHHH
T ss_pred cCCCCCCCCCCCccCCccCccHHHHHhcccCCCCcCCCcc-cchHHHHH
Confidence 33444799999841 21 2355699 99999975
No 60
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=23.59 E-value=54 Score=26.12 Aligned_cols=25 Identities=24% Similarity=0.567 Sum_probs=19.5
Q ss_pred CCCccCCCCCCCCceEeccceeeeh
Q 021042 16 NKICVDCAQKNPQWASVSYGVFMCL 40 (318)
Q Consensus 16 Nk~C~DCga~~P~WaSv~~GiFICl 40 (318)
...|.+|+.....|+++.-|-+-|.
T Consensus 24 ~~~C~~C~~~~~~W~CL~CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTIQENWVCLSCYQVYCG 48 (109)
T ss_dssp TCCCTTTCCCSSEEEETTTCCEEEC
T ss_pred CCcCccccCCCCeeeeeecCccccC
Confidence 5689999998877887776666663
No 61
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=22.50 E-value=32 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.582 Sum_probs=20.0
Q ss_pred CCCccCCCCCCCCceEeccceeeehhhhhh
Q 021042 16 NKICVDCAQKNPQWASVSYGVFMCLECSGK 45 (318)
Q Consensus 16 Nk~C~DCga~~P~WaSv~~GiFICl~Csgi 45 (318)
...|-+|+...-.+ ...-|.+||..|--+
T Consensus 5 ~~~CP~C~~~~l~~-d~~~gelvC~~CG~v 33 (50)
T 1pft_A 5 QKVCPACESAELIY-DPERGEIVCAKCGYV 33 (50)
T ss_dssp CCSCTTTSCCCEEE-ETTTTEEEESSSCCB
T ss_pred cEeCcCCCCcceEE-cCCCCeEECcccCCc
Confidence 34799998853322 335689999999654
No 62
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=21.06 E-value=54 Score=29.02 Aligned_cols=29 Identities=24% Similarity=0.484 Sum_probs=22.4
Q ss_pred CccCCCCCCCCce-Eeccceeeehhhhhhh
Q 021042 18 ICVDCAQKNPQWA-SVSYGVFMCLECSGKH 46 (318)
Q Consensus 18 ~C~DCga~~P~Wa-Sv~~GiFICl~CsgiH 46 (318)
+|-+|+...+.-+ ...-|-.||.+|--|-
T Consensus 23 ~CPECGs~~t~IV~D~erGE~VCsdCGLVL 52 (197)
T 3k1f_M 23 TCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (197)
T ss_dssp CCTTTCCSSCCEEEEGGGTEEEETTTCBBC
T ss_pred ECcCCCCcCCeEEEeCCCCEEEEcCCCCCc
Confidence 7999998544433 4678999999998764
No 63
>2ida_A Hypothetical protein; zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: g.44.1.5
Probab=20.30 E-value=16 Score=29.15 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=22.2
Q ss_pred CCCCCCccCCCCCCCCceEeccceeeehhhhhhh
Q 021042 13 QPGNKICVDCAQKNPQWASVSYGVFMCLECSGKH 46 (318)
Q Consensus 13 ~p~Nk~C~DCga~~P~WaSv~~GiFICl~CsgiH 46 (318)
.|....|.+|....-.|+. .+||+.|..|.
T Consensus 15 ~p~~~~C~~C~~~~~~Wv~----LwlCL~CG~VG 44 (102)
T 2ida_A 15 TPSALGCEECLKIGSPWVH----LRICRTCGHVG 44 (102)
T ss_dssp CCSSSSCHHHHTTTCCCSC----BEEESSSCCCC
T ss_pred CCCCCcCccccccCCcchh----eeeeeEcCCCc
Confidence 3456789999998766753 67888887654
No 64
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=20.15 E-value=40 Score=26.07 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=9.4
Q ss_pred CCCcccccCCC
Q 021042 241 QGGKYVGFGST 251 (318)
Q Consensus 241 QGGkY~GFG~t 251 (318)
-+|+|.+||+.
T Consensus 73 ~~g~yr~FG~~ 83 (84)
T 3fbi_A 73 KNQQYRAFGSI 83 (84)
T ss_dssp SSGGGSCSCCC
T ss_pred CCCCeeecCcc
Confidence 57999999974
Done!