BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021044
(318 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94260|G3BP_SCHPO Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=nxt3 PE=1 SV=1
Length = 434
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 10 IKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHFIGEE 68
I SL S NGG+++ V G + K RKF QTFFLA Q GYFVLNDIF F+ E+
Sbjct: 81 ISNVDSLASSNGGIVIQVLGEMSNKG-KLSRKFAQTFFLAEQPNGYFVLNDIFRFLRED 138
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311
+VYV+NLP + E E+ + F KFG +SS VV+R + C+ FV FE +AVE
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISS-AVVMRDQSGNSRCFGFVNFECTEAAASAVE 287
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 12/96 (12%)
Query: 232 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 291
++ A TG E +VE+ S+YV +L PSVSE+ + + F G +SS V +
Sbjct: 20 DQKQAATGSESQSVENSS--ASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKT 77
Query: 292 GICYAFVEFEDMTGVRNAVE----------VCILMW 317
+ YA+V F D R A+E +C +MW
Sbjct: 78 SLGYAYVNFNDHEAGRKAIEQLNYTPIKGRLCRIMW 113
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 219 PTTQQETVSSYAYEKSWADT--GEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFG 276
P T++ET + A + A T EE + ED+ + S+YV L PSV+E+ + E F G
Sbjct: 11 PATKEETTTEAAPAEGEAKTESSEEKGSKEDQGDNASLYVGELDPSVTEAMLFEIFNPIG 70
Query: 277 ELSSEGVVIRSRKDVGICYAFVEFEDMT-GVRNAVEV---------CILMW 317
++S V + + YA+V F + G+R E+ C +MW
Sbjct: 71 PVTSVRVCRDAITRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMW 121
>sp|Q75AA5|NTF2_ASHGO Nuclear transport factor 2 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=NTF2 PE=3 SV=1
Length = 125
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 20 NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
NG VLVM++G + + D ++F Q F L P+ Y+V NDIF
Sbjct: 77 NGDVLVMITGDLLIDDEQNAQRFSQVFHLMPEGNSYYVFNDIFR 120
>sp|Q9SJA6|RZ22A_ARATH Serine/arginine-rich splicing factor RSZ22A OS=Arabidopsis thaliana
GN=RSZ22A PE=1 SV=1
Length = 196
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRSFGVIRS---VWVARRPPG--YAFLDFEDSRDARDAI 55
Query: 311 E 311
Sbjct: 56 R 56
>sp|Q6FRC6|NTF2_CANGA Nuclear transport factor 2 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=NTF2 PE=3
SV=1
Length = 125
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 11 KTAHSLESW-------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
K AH + + NG VLVM++G + + D ++F Q F L P Y+V NDIF
Sbjct: 61 KVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|O81126|RZP22_ARATH Serine/arginine-rich splicing factor RSZ22 OS=Arabidopsis thaliana
GN=RSZ22 PE=1 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 5/62 (8%)
Query: 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+ VYV NL P V+E E+ +EF+ FG + S V +R+ G YAF++FED R+A+
Sbjct: 1 MSRVYVGNLDPRVTERELEDEFRAFGVVRSVWV---ARRPPG--YAFLDFEDPRDARDAI 55
Query: 311 EV 312
Sbjct: 56 RA 57
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE- 311
S+YV +L PSVSE+ + + F G +SS V + + YA+V F D + A+E
Sbjct: 36 SLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAKTAIEK 95
Query: 312 ---------VCILMW 317
+C +MW
Sbjct: 96 LNFTPIKGKLCRIMW 110
>sp|Q6BWC0|NTF2_DEBHA Nuclear transport factor 2 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=NTF2 PE=3 SV=1
Length = 124
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 11 KTAHSLESW-------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
K AH + + NG +LVMV+G + + D +++ Q F L P Y+V NDIF
Sbjct: 61 KVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIPDGNSYYVFNDIFR 120
Query: 64 F 64
Sbjct: 121 L 121
>sp|Q2L4W6|SPO5_SCHPO Sporulation-specific protein 5 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=spo5 PE=1 SV=1
Length = 567
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 243 SAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED 302
S +E ++VY+R LPP+ S+ + +FG++SS +I ++ Y F FE+
Sbjct: 287 SNMESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGFACFEE 346
Query: 303 MTGVRNAVEVCI 314
+ +CI
Sbjct: 347 ----EKSALICI 354
>sp|Q8NJ52|NTF2_DAVTA Nuclear transport factor 2 OS=Davidiella tassiana GN=NTF2 PE=1 SV=1
Length = 125
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 20 NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHFI 65
+GG+LV+VSG++ V++ + QTF L P + Y+V ND+F +
Sbjct: 76 SGGILVVVSGALLVEEERRPMSYTQTFQLLPADGAYYVFNDVFRLV 121
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 309
E + VYV NLP V E E+ + F K+G + V I+S + G +AFVEFED +A
Sbjct: 7 EDQKVYVGNLPGDVREKEVEDIFHKYGRIKY--VDIKSGR--GPAFAFVEFEDHRDAEDA 62
Query: 310 V 310
V
Sbjct: 63 V 63
>sp|Q96VN3|NTF2_EMENI Nuclear transport factor 2 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ntf2 PE=3
SV=1
Length = 125
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 20 NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKG-YFVLNDIFHFI 65
+GG+LV+V+G++ V + + QTF L P G YFVLND+F I
Sbjct: 76 HGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLI 122
>sp|Q6CQX4|NTF2_KLULA Nuclear transport factor 2 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=NTF2 PE=3 SV=1
Length = 125
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 11 KTAHSLESW-------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
K AH + + NG VLVM++G + + + ++F Q F L P+ Y+V NDIF
Sbjct: 61 KVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMPEGSSYYVYNDIFR 120
Query: 64 F 64
Sbjct: 121 L 121
>sp|P97855|G3BP1_MOUSE Ras GTPase-activating protein-binding protein 1 OS=Mus musculus
GN=G3bp1 PE=1 SV=1
Length = 465
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MSLNYSGIEIKTAH--SLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ---EKGY 55
MS N++ K H + + N GV+V V G + + A R+F+QTF LAP+ +
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSVANKF 124
Query: 56 FVLNDIFHFIGE 67
+V NDIF + E
Sbjct: 125 YVHNDIFRYQDE 136
>sp|Q32LC7|G3BP1_BOVIN Ras GTPase-activating protein-binding protein 1 OS=Bos taurus
GN=G3BP PE=2 SV=1
Length = 465
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MSLNYSGIEIKTAH--SLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ---EKGY 55
MS N++ K H + + N GV+V V G + + A R+F+QTF LAP+ +
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLS-NNNQALRRFMQTFVLAPEGSVANKF 124
Query: 56 FVLNDIFHFIGE 67
+V NDIF + E
Sbjct: 125 YVHNDIFRYQDE 136
>sp|Q13283|G3BP1_HUMAN Ras GTPase-activating protein-binding protein 1 OS=Homo sapiens
GN=G3BP1 PE=1 SV=1
Length = 466
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MSLNYSGIEIKTAH--SLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ---EKGY 55
MS N++ K H + + N GV+V V G + + A R+F+QTF LAP+ +
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSVANKF 124
Query: 56 FVLNDIFHFIGE 67
+V NDIF + E
Sbjct: 125 YVHNDIFRYQDE 136
>sp|Q5RB87|G3BP1_PONAB Ras GTPase-activating protein-binding protein 1 OS=Pongo abelii
GN=G3BP1 PE=2 SV=1
Length = 466
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MSLNYSGIEIKTAH--SLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ---EKGY 55
MS N++ K H + + N GV+V V G + + A R+F+QTF LAP+ +
Sbjct: 66 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNN-QALRRFMQTFVLAPEGSVANKF 124
Query: 56 FVLNDIFHFIGE 67
+V NDIF + E
Sbjct: 125 YVHNDIFRYQDE 136
>sp|Q9P926|NTF2_CANAX Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1
Length = 124
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 11 KTAHSLE-------SWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
K AH + S NG +LVMV+G + + + +++ Q F L P Y+V NDIF
Sbjct: 61 KVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIPDNGSYYVFNDIFR 120
Query: 64 F 64
Sbjct: 121 L 121
>sp|Q8NDT2|RB15B_HUMAN Putative RNA-binding protein 15B OS=Homo sapiens GN=RBM15B PE=1
SV=3
Length = 890
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 240 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 299
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 325 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 383
Query: 300 FEDM 303
F+++
Sbjct: 384 FQNL 387
>sp|Q6PHZ5|RB15B_MOUSE Putative RNA-binding protein 15B OS=Mus musculus GN=Rbm15b PE=1
SV=2
Length = 887
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 240 EEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVE 299
E++ +D+ +++++ NL SVSE E+ F+K+G + E V+ R + G YAF++
Sbjct: 321 EDLMPEDDQRATRNLFIGNLDHSVSEVELRRAFEKYG-IIEEVVIKRPARGQGGAYAFLK 379
Query: 300 FEDM 303
F+++
Sbjct: 380 FQNL 383
>sp|O81127|RZP21_ARATH Serine/arginine-rich splicing factor RSZ21 OS=Arabidopsis thaliana
GN=RSZ21 PE=1 SV=1
Length = 187
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Query: 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+ VYV NL P V+E E+ +EFK FG L + V +R+ G YAF+EF+D +A+
Sbjct: 1 MTRVYVGNLDPRVTERELEDEFKAFGVLRNVWV---ARRPPG--YAFLEFDDERDALDAI 55
>sp|P33331|NTF2_YEAST Nuclear transport factor 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NTF2 PE=1 SV=2
Length = 125
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 20 NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFH 63
NG VLVM++G + + + ++F Q F L P Y+V NDIF
Sbjct: 77 NGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFR 120
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 245 VEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC--YAFVEFED 302
V+ EE+ ++Y++NL VSE + E+F +FG++ S + ++ + +C YAFV F++
Sbjct: 194 VKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI---AKDENRLCRGYAFVNFDN 250
Query: 303 MTGVRNAVEV 312
R A E
Sbjct: 251 PEDARRAAET 260
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV-VIRSRKDVGICYAFVEFEDMTGVRNA 309
+ +V+V+NLP SV+ + + + FKKFG + S V + K G Y FV+FE A
Sbjct: 111 VGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRG--YGFVQFEQEDAAHAA 168
Query: 310 VEV 312
++
Sbjct: 169 IQT 171
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311
S+YV +L PSV+E + + F +F L+S + + +CY + F A+E
Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 248 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVR 307
E +V+V NL PSV+ES + F FGE+ S + R K V YAFVEF++ +
Sbjct: 2 ERRKATVHVGNLAPSVTESLLYNAFIPFGEIISVALH-RKEKAVDRSYAFVEFDEPEDAK 60
Query: 308 NAVE 311
A+E
Sbjct: 61 EAME 64
>sp|O13674|MUG24_SCHPO Meiotically up-regulated gene 24 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug24 PE=1 SV=1
Length = 654
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 38/61 (62%), Gaps = 9/61 (14%)
Query: 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311
++V++ NLP S E EI E F KFG++ E + I S+K++ AFV F +R+A++
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKI--EHIKILSKKNI----AFVHF---LNIRDAIK 349
Query: 312 V 312
V
Sbjct: 350 V 350
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 213 WNHVPQPTTQQETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEF 272
+N P P+T+Q + +WA G + E +++V +L P V++ +++ F
Sbjct: 121 YNGAPMPSTEQ------TFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTF 174
Query: 273 KK-FGELSSEGVVIRSRKDVGICYAFVEFED 302
K +G + VV+ Y FV F D
Sbjct: 175 KNVYGSVKGAKVVLDRTTGRSKGYGFVRFAD 205
>sp|O74452|SCW1_SCHPO Cell wall integrity protein scw1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=scw1 PE=1 SV=1
Length = 561
Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 231 YEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD 290
+++ A T + + ++YV NLPPS SE E+ F ++ + + R++ +
Sbjct: 405 HQRIPASTPTNTNPADQNPPCNTIYVGNLPPSTSEEELKVLFST--QVGYKRLCFRTKGN 462
Query: 291 VGICYAFVEFED----MTGVRNAVEVCI 314
+C FVEFE+ M ++N VC+
Sbjct: 463 GPMC--FVEFENIPYAMEALKNLQGVCL 488
>sp|Q1JPD6|STPAP_BOVIN Speckle targeted PIP5K1A-regulated poly(A) polymerase OS=Bos taurus
GN=TUT1 PE=2 SV=1
Length = 871
Score = 39.7 bits (91), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 241 EISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 300
E+ A + ++SV+V P V ++++E F+ FG ++S VV+ KD G+ +A VE
Sbjct: 45 ELRATRKAQGLRSVFVSGFPRDVDSTQLSEYFQAFGPVAS--VVM--DKDKGV-FAIVEM 99
Query: 301 EDMTGVRNAV 310
D+ G R AV
Sbjct: 100 GDL-GAREAV 108
>sp|Q7TN98|CPEB4_MOUSE Cytoplasmic polyadenylation element-binding protein 4 OS=Mus
musculus GN=Cpeb4 PE=2 SV=1
Length = 729
Score = 39.7 bits (91), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 248 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 305
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 306 VRNAVEVCI 314
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q62504|MINT_MOUSE Msx2-interacting protein OS=Mus musculus GN=Spen PE=1 SV=2
Length = 3644
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 309
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
>sp|Q17RY0|CPEB4_HUMAN Cytoplasmic polyadenylation element-binding protein 4 OS=Homo
sapiens GN=CPEB4 PE=1 SV=1
Length = 729
Score = 39.7 bits (91), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 248 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 305
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 468 ERYSRKVFVGGLPPDIDEDEITASFRRFGPLIVDWPHKAESKSYFPPKGYAFLLFQDESS 527
Query: 306 VRNAVEVCI 314
V+ ++ CI
Sbjct: 528 VQALIDACI 536
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q96T58|MINT_HUMAN Msx2-interacting protein OS=Homo sapiens GN=SPEN PE=1 SV=1
Length = 3664
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 309
E + ++V NLP +V E +I E FK++G + S ++ + + G+ AFV+F D+ + A
Sbjct: 4 ETRHLWVGNLPENVREEKIIEHFKRYGRVESVKILPKRGSEGGVA-AFVDFVDIKSAQKA 62
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 232 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 291
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 292 GICYAFVEFEDMTGVRNAVEV 312
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+ VYV NL P V+ EI +EF+ FG L S V +RK G +AF++F+D +A+
Sbjct: 1 MARVYVGNLDPRVTAREIEDEFRVFGVLRSVWV---ARKPPG--FAFIDFDDRRDAEDAI 55
Query: 311 E 311
Sbjct: 56 R 56
>sp|Q7SXN4|CPEB4_DANRE Cytoplasmic polyadenylation element-binding protein 4 OS=Danio
rerio GN=cpeb4 PE=2 SV=1
Length = 635
Score = 39.3 bits (90), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 248 EEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV--GICYAFVEFEDMTG 305
E + V+V LPP + E EI F++FG L + K YAF+ F+D +
Sbjct: 374 ERYSRKVFVGGLPPDIDEDEITASFRRFGHLFVDWPHKAESKSYFPPKGYAFLLFQDESS 433
Query: 306 VRNAVEVCI 314
V+ ++ C+
Sbjct: 434 VQALIDACM 442
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 232 EKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV 291
E++ G + D + ++V +P + E+E+ E FKKFG ++ ++ + K
Sbjct: 93 ERTRPKEGWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 152
Query: 292 GICYAFVEFEDMTGVRNAVEV 312
+ F+ FED V AV +
Sbjct: 153 PRGFGFITFEDEQSVDQAVNM 173
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 39.3 bits (90), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEF 300
+VYV+NLP +++ E+ + F K+G++SS VV++ + + FV F
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISS-AVVMKDQSGNSRSFGFVNF 286
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 39.3 bits (90), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 309
E ++YV+NLP V E + + F +FG++ S V+R C+ FV FE + A
Sbjct: 189 EFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVK-VMRDNSGHSRCFGFVNFEKHEEAQKA 247
Query: 310 V 310
V
Sbjct: 248 V 248
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 38.9 bits (89), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 254 VYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAV 310
+YV NLPP + +I + F K+G + + +++R+ G +AFVEFED +AV
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRD--IDLKNRRG-GPPFAFVEFEDPRDAEDAV 71
>sp|Q28CH2|CPEB3_XENTR Cytoplasmic polyadenylation element-binding protein 3 OS=Xenopus
tropicalis GN=cpeb3 PE=2 SV=1
Length = 632
Score = 38.5 bits (88), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 224 ETVSSYAYEKSWADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGV 283
+++SS + GE I E + V+V LPP + E EI F++FG L +
Sbjct: 352 QSLSSGLSSPTHCQNGERI-----ERYSRKVFVGGLPPDIDEDEITASFRRFGPLVVDWP 406
Query: 284 VIRSRKDV--GICYAFVEFEDMTGVRNAVEVCI 314
K YAF+ F++ + V+ ++ C+
Sbjct: 407 HKAESKSYFPPKGYAFLLFQEESSVQALIDACL 439
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R OS=Homo sapiens GN=HNRNPR
PE=1 SV=1
Length = 633
Score = 38.5 bits (88), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 235 WADTGEEISAVEDEEEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGIC 294
WAD EE E ++K ++VRNL +V+E + + F +FG+L ++ KD
Sbjct: 325 WADPVEEPDP-EVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLER----VKKLKD---- 375
Query: 295 YAFVEFEDMTGVRNAVE 311
YAFV FED A++
Sbjct: 376 YAFVHFEDRGAAVKAMD 392
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 38.5 bits (88), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 15/86 (17%)
Query: 233 KSWADTG--EEISAVEDEE-----EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVI 285
K W + G E +ED + ++K ++VRNL +V+E + + F +FG+L +
Sbjct: 312 KVWGNVGTVEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQFGKLER----V 367
Query: 286 RSRKDVGICYAFVEFEDMTGVRNAVE 311
+ KD YAF+ F++ G A+E
Sbjct: 368 KKLKD----YAFIHFDERDGAVKAME 389
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122,458,493
Number of Sequences: 539616
Number of extensions: 5377690
Number of successful extensions: 14340
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 254
Number of HSP's that attempted gapping in prelim test: 13915
Number of HSP's gapped (non-prelim): 660
length of query: 318
length of database: 191,569,459
effective HSP length: 117
effective length of query: 201
effective length of database: 128,434,387
effective search space: 25815311787
effective search space used: 25815311787
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)