Query 021044
Match_columns 318
No_of_seqs 382 out of 2221
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 11:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q90_A RAS GTPase-activating p 99.9 4.8E-22 1.7E-26 166.7 7.5 68 1-69 67-139 (140)
2 3ujm_A Rasputin; NTF2-like fol 99.8 1.5E-21 5.2E-26 159.5 6.1 64 1-65 54-120 (120)
3 3nv0_B NTF2-related export pro 99.8 1.6E-20 5.5E-25 159.7 8.6 65 1-66 83-154 (154)
4 1gy6_A Nuclear transport facto 99.8 3.9E-20 1.3E-24 152.6 8.9 66 2-68 58-125 (127)
5 1gy7_A Nuclear transport facto 99.8 4.4E-20 1.5E-24 151.9 8.9 66 2-67 56-124 (125)
6 1zo2_A NTF2, nuclear transport 99.8 4.9E-20 1.7E-24 152.4 7.3 64 2-66 62-128 (129)
7 2qiy_A UBP3-associated protein 99.8 2.7E-19 9.1E-24 152.3 6.9 67 2-69 77-151 (154)
8 1jkg_A P15; NTF2-like domain, 99.8 9.8E-19 3.3E-23 146.5 9.0 65 2-67 64-138 (140)
9 4fxv_A ELAV-like protein 1; RN 99.6 1.5E-15 5E-20 119.4 9.3 66 249-314 17-82 (99)
10 3s7r_A Heterogeneous nuclear r 99.5 1.4E-14 4.7E-19 110.0 8.0 67 249-315 9-75 (87)
11 3s8s_A Histone-lysine N-methyl 99.5 2.1E-14 7.3E-19 114.9 9.3 66 250-315 5-70 (110)
12 2cqc_A Arginine/serine-rich sp 99.5 6.9E-14 2.4E-18 107.6 10.1 66 249-314 13-78 (95)
13 2dgo_A Cytotoxic granule-assoc 99.5 8.8E-14 3E-18 111.1 10.5 66 249-314 13-78 (115)
14 2rs2_A Musashi-1, RNA-binding 99.5 2.4E-14 8.3E-19 114.1 7.1 67 250-316 24-90 (109)
15 2cqg_A TDP-43, TAR DNA-binding 99.5 6.5E-14 2.2E-18 109.7 9.4 64 250-313 14-77 (103)
16 3p5t_L Cleavage and polyadenyl 99.5 2.6E-14 9E-19 109.6 7.0 64 252-315 2-67 (90)
17 3md1_A Nuclear and cytoplasmic 99.5 7.4E-14 2.5E-18 104.8 9.3 63 252-314 2-64 (83)
18 2lxi_A RNA-binding protein 10; 99.5 8E-15 2.7E-19 113.2 3.9 62 252-313 2-64 (91)
19 2khc_A Testis-specific RNP-typ 99.5 7.5E-14 2.6E-18 112.1 9.6 66 249-314 38-103 (118)
20 3ns6_A Eukaryotic translation 99.5 2.4E-14 8.1E-19 112.3 6.2 66 250-315 5-76 (100)
21 4f25_A Polyadenylate-binding p 99.5 5.7E-14 1.9E-18 112.9 8.6 63 251-315 5-67 (115)
22 2lkz_A RNA-binding protein 5; 99.5 1.7E-14 5.8E-19 112.7 5.3 66 250-315 8-75 (95)
23 2cqd_A RNA-binding region cont 99.5 5.9E-14 2E-18 112.4 8.6 68 249-316 15-82 (116)
24 2dgp_A Bruno-like 4, RNA bindi 99.5 5.2E-14 1.8E-18 110.8 8.1 66 250-315 12-77 (106)
25 2cq0_A Eukaryotic translation 99.5 8.5E-14 2.9E-18 109.1 9.2 66 249-314 13-78 (103)
26 3bs9_A Nucleolysin TIA-1 isofo 99.5 9.5E-14 3.3E-18 105.1 9.2 65 250-314 5-69 (87)
27 2cph_A RNA binding motif prote 99.5 8.7E-14 3E-18 109.5 9.2 65 249-313 13-78 (107)
28 1s79_A Lupus LA protein; RRM, 99.5 5.8E-14 2E-18 111.1 8.1 61 250-311 10-70 (103)
29 2dnh_A Bruno-like 5, RNA bindi 99.5 1.3E-13 4.6E-18 108.2 10.1 65 250-315 14-78 (105)
30 1x4h_A RNA-binding protein 28; 99.5 8.4E-14 2.9E-18 110.3 9.0 65 250-314 14-78 (111)
31 1x4e_A RNA binding motif, sing 99.5 6.3E-14 2.2E-18 105.9 7.9 65 250-314 4-68 (85)
32 1u6f_A Tcubp1, RNA-binding pro 99.5 2.9E-13 9.9E-18 111.7 12.4 66 250-315 41-106 (139)
33 2do4_A Squamous cell carcinoma 99.5 1.7E-13 6E-18 106.7 10.2 64 250-314 16-79 (100)
34 1p27_B RNA-binding protein 8A; 99.5 1.6E-13 5.6E-18 107.9 10.1 65 250-314 22-86 (106)
35 2cpz_A CUG triplet repeat RNA- 99.5 1.2E-13 4.1E-18 110.5 9.3 65 250-314 24-88 (115)
36 2dgs_A DAZ-associated protein 99.5 1.2E-13 4.1E-18 107.4 9.0 64 250-314 9-72 (99)
37 1x5u_A Splicing factor 3B subu 99.5 1E-13 3.5E-18 108.9 8.7 65 250-314 14-78 (105)
38 2e5h_A Zinc finger CCHC-type a 99.5 1.2E-13 4.2E-18 106.1 8.8 66 250-315 15-80 (94)
39 1whw_A Hypothetical protein ri 99.5 1.2E-13 4E-18 107.4 8.6 66 250-315 7-72 (99)
40 2dh8_A DAZ-associated protein 99.5 1.2E-13 4E-18 108.6 8.6 64 249-312 14-77 (105)
41 3mdf_A Peptidyl-prolyl CIS-tra 99.5 9.9E-14 3.4E-18 104.6 7.9 65 250-314 6-70 (85)
42 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.9E-14 9.9E-19 105.5 4.8 64 252-315 1-64 (77)
43 2div_A TRNA selenocysteine ass 99.5 1.2E-13 4.2E-18 107.2 8.4 65 250-314 8-73 (99)
44 2d9p_A Polyadenylate-binding p 99.5 1.8E-13 6.1E-18 107.2 9.3 64 249-314 13-76 (103)
45 2dnz_A Probable RNA-binding pr 99.5 2.1E-13 7.2E-18 105.0 9.4 65 250-314 4-68 (95)
46 1x4b_A Heterogeneous nuclear r 99.5 1.2E-13 4.2E-18 110.5 8.2 65 249-313 25-89 (116)
47 2la6_A RNA-binding protein FUS 99.5 2.2E-13 7.7E-18 106.0 9.4 65 250-314 12-84 (99)
48 2jrs_A RNA-binding protein 39; 99.5 2.4E-13 8.1E-18 108.2 9.7 66 250-315 25-90 (108)
49 2ywk_A Putative RNA-binding pr 99.5 1.8E-13 6.3E-18 105.3 8.6 64 250-314 15-78 (95)
50 2x1f_A MRNA 3'-END-processing 99.5 1.5E-13 5.1E-18 106.4 8.0 64 251-314 2-65 (96)
51 3n9u_C Cleavage and polyadenyl 99.5 1.6E-13 5.6E-18 116.5 9.0 65 250-314 54-120 (156)
52 2dnm_A SRP46 splicing factor; 99.5 1.1E-13 3.6E-18 108.5 7.1 65 250-314 12-76 (103)
53 1x5s_A Cold-inducible RNA-bind 99.5 1.5E-13 5.2E-18 107.3 8.0 65 250-314 11-75 (102)
54 1wg5_A Heterogeneous nuclear r 99.5 1.5E-13 5E-18 108.4 7.9 65 250-315 14-79 (104)
55 3ucg_A Polyadenylate-binding p 99.4 1.4E-13 4.8E-18 104.6 7.4 64 250-314 5-68 (89)
56 2cqp_A RNA-binding protein 12; 99.4 1.6E-13 5.3E-18 106.5 7.8 65 250-314 14-78 (98)
57 2krb_A Eukaryotic translation 99.4 1E-13 3.5E-18 104.1 6.5 62 252-315 2-69 (81)
58 2cpf_A RNA binding motif prote 99.4 1.8E-13 6.3E-18 106.0 8.1 65 250-314 4-71 (98)
59 2cqi_A Nucleolysin TIAR; RNA r 99.4 3.7E-13 1.3E-17 105.4 9.9 64 249-314 13-76 (103)
60 2cqb_A Peptidyl-prolyl CIS-tra 99.4 9.9E-14 3.4E-18 108.4 6.5 65 250-314 11-75 (102)
61 2dhg_A TRNA selenocysteine ass 99.4 3E-13 1E-17 106.0 9.3 65 250-315 8-73 (104)
62 2cq4_A RNA binding motif prote 99.4 1.7E-13 5.9E-18 109.3 7.9 65 249-314 23-87 (114)
63 2m2b_A RNA-binding protein 10; 99.4 9.5E-14 3.2E-18 114.0 6.4 65 250-315 22-88 (131)
64 2cq3_A RNA-binding protein 9; 99.4 5.2E-13 1.8E-17 104.5 10.3 64 249-314 13-76 (103)
65 2dng_A Eukaryotic translation 99.4 4.3E-13 1.5E-17 105.1 9.7 63 250-314 14-76 (103)
66 2do0_A HnRNP M, heterogeneous 99.4 4.6E-13 1.6E-17 106.7 10.0 65 249-314 13-77 (114)
67 1p1t_A Cleavage stimulation fa 99.4 1.6E-13 5.6E-18 107.4 7.2 65 250-314 7-71 (104)
68 1oo0_B CG8781-PA, drosophila Y 99.4 2.9E-13 1E-17 107.2 8.7 65 250-314 25-89 (110)
69 2kxn_B Transformer-2 protein h 99.4 3.2E-13 1.1E-17 111.0 9.2 65 250-314 45-109 (129)
70 2ek1_A RNA-binding protein 12; 99.4 1.5E-13 5E-18 105.9 6.6 65 250-314 14-78 (95)
71 2jwn_A Embryonic polyadenylate 99.4 5.6E-13 1.9E-17 107.8 10.0 65 249-314 34-98 (124)
72 4a8x_A RNA-binding protein wit 99.4 2.1E-13 7.1E-18 103.3 7.0 65 250-314 3-68 (88)
73 2mss_A Protein (musashi1); RNA 99.4 1.1E-13 3.8E-18 102.0 5.2 59 253-311 1-59 (75)
74 1x5t_A Splicing factor 3B subu 99.4 1.8E-13 6.1E-18 105.6 6.6 65 250-314 4-69 (96)
75 2dgv_A HnRNP M, heterogeneous 99.4 6.5E-13 2.2E-17 101.6 9.6 63 250-314 7-69 (92)
76 1iqt_A AUF1, heterogeneous nuc 99.4 5.4E-14 1.8E-18 103.6 3.4 64 253-316 1-64 (75)
77 2cpe_A RNA-binding protein EWS 99.4 3E-13 1E-17 107.7 7.8 66 249-314 13-86 (113)
78 1wi8_A EIF-4B, eukaryotic tran 99.4 4.3E-13 1.5E-17 105.3 8.6 63 250-314 14-77 (104)
79 3ulh_A THO complex subunit 4; 99.4 5.8E-13 2E-17 104.9 9.3 64 250-314 28-91 (107)
80 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 5.7E-13 2E-17 109.5 9.5 65 250-314 62-126 (140)
81 1sjq_A Polypyrimidine tract-bi 99.4 2.9E-13 9.8E-18 107.8 7.4 59 250-314 15-73 (105)
82 1x5o_A RNA binding motif, sing 99.4 9.7E-13 3.3E-17 104.8 10.5 65 250-315 24-88 (114)
83 2dnl_A Cytoplasmic polyadenyla 99.4 1.3E-13 4.4E-18 110.5 5.3 64 250-314 7-73 (114)
84 2err_A Ataxin-2-binding protei 99.4 3E-13 1E-17 107.6 7.3 63 250-314 28-90 (109)
85 1wex_A Hypothetical protein (r 99.4 9.8E-13 3.3E-17 104.3 10.0 59 250-314 14-72 (104)
86 2fy1_A RNA-binding motif prote 99.4 4.5E-13 1.5E-17 107.9 8.1 64 250-314 6-69 (116)
87 3ex7_B RNA-binding protein 8A; 99.4 5.8E-13 2E-17 108.0 8.5 66 250-315 21-86 (126)
88 2wbr_A GW182, gawky, LD47780P; 99.4 4E-13 1.4E-17 103.4 6.8 59 251-315 7-65 (89)
89 2cq1_A PTB-like protein L; RRM 99.4 7.1E-13 2.4E-17 104.6 8.3 59 250-314 14-72 (101)
90 2dis_A Unnamed protein product 99.4 4.5E-13 1.5E-17 105.9 6.6 65 250-314 7-73 (109)
91 2cpy_A RNA-binding protein 12; 99.4 3.2E-13 1.1E-17 108.2 5.8 63 250-313 14-77 (114)
92 2j76_E EIF-4B, EIF4B, eukaryot 99.4 2.7E-13 9.3E-18 106.0 5.2 63 250-314 18-81 (100)
93 1x4d_A Matrin 3; structural ge 99.4 5.8E-13 2E-17 105.4 7.1 59 250-314 14-73 (102)
94 1x4a_A Splicing factor, argini 99.4 2.1E-12 7.3E-17 102.1 10.2 62 250-314 21-82 (109)
95 3r27_A HnRNP L, heterogeneous 99.4 1.3E-12 4.5E-17 103.0 8.9 59 250-314 20-78 (100)
96 2dgx_A KIAA0430 protein; RRM d 99.4 8.4E-13 2.9E-17 102.4 7.5 63 250-315 8-74 (96)
97 2kt5_A RNA and export factor-b 99.4 1.2E-12 4E-17 106.1 8.6 64 250-314 34-97 (124)
98 2ki2_A SS-DNA binding protein 99.4 2E-13 6.9E-18 104.2 3.8 62 252-314 2-63 (90)
99 2nlw_A Eukaryotic translation 99.4 4.5E-13 1.6E-17 105.7 6.0 63 250-314 14-82 (105)
100 4f02_A Polyadenylate-binding p 99.4 1.1E-12 3.9E-17 115.8 9.1 65 251-315 15-79 (213)
101 2dgw_A Probable RNA-binding pr 99.4 1.2E-12 4.1E-17 100.1 8.1 62 250-314 9-70 (91)
102 2xs2_A Deleted in azoospermia- 99.4 4.4E-13 1.5E-17 104.7 5.5 61 250-311 8-68 (102)
103 1wez_A HnRNP H', FTP-3, hetero 99.4 6.1E-13 2.1E-17 104.8 6.3 61 250-312 14-74 (102)
104 2db1_A Heterogeneous nuclear r 99.4 9E-13 3.1E-17 106.4 7.3 63 250-314 16-81 (118)
105 1l3k_A Heterogeneous nuclear r 99.4 1.3E-12 4.5E-17 112.5 8.9 66 250-315 12-77 (196)
106 3q2s_C Cleavage and polyadenyl 99.4 7.6E-13 2.6E-17 119.1 7.4 65 250-314 67-133 (229)
107 2dnn_A RNA-binding protein 12; 99.4 9.6E-13 3.3E-17 105.3 7.1 60 250-311 15-74 (109)
108 2kn4_A Immunoglobulin G-bindin 99.4 1.3E-12 4.5E-17 109.9 8.1 66 250-315 69-134 (158)
109 1wel_A RNA-binding protein 12; 99.4 7.4E-13 2.5E-17 107.5 6.3 64 250-314 24-87 (124)
110 1h2v_Z 20 kDa nuclear CAP bind 99.4 2.2E-12 7.5E-17 108.6 9.3 65 250-314 38-102 (156)
111 1rk8_A CG8781-PA, CG8781-PA pr 99.4 2.1E-12 7.1E-17 110.0 9.3 66 250-315 71-136 (165)
112 2dha_A FLJ20171 protein; RRM d 99.3 7E-13 2.4E-17 108.4 5.9 65 250-315 22-90 (123)
113 2ad9_A Polypyrimidine tract-bi 99.3 1.5E-12 5.2E-17 105.9 7.8 59 250-314 30-88 (119)
114 2lmi_A GRSF-1, G-rich sequence 99.3 4.9E-13 1.7E-17 105.9 4.6 63 250-314 10-75 (107)
115 2hgm_A HNRPF protein, heteroge 99.3 9E-13 3.1E-17 108.3 6.3 66 250-317 41-108 (126)
116 2ytc_A PRE-mRNA-splicing facto 99.3 3E-12 1E-16 96.4 8.6 58 250-313 11-68 (85)
117 2fc9_A NCL protein; structure 99.3 1.5E-12 5.2E-17 101.5 7.1 62 249-314 13-74 (101)
118 3nmr_A Cugbp ELAV-like family 99.3 3E-12 1E-16 107.9 9.3 66 250-315 2-69 (175)
119 2dnq_A RNA-binding protein 4B; 99.3 4.4E-12 1.5E-16 96.8 9.4 58 250-315 7-64 (90)
120 2cjk_A Nuclear polyadenylated 99.3 1.1E-12 3.7E-17 110.1 6.5 64 250-313 2-65 (167)
121 2cpx_A Hypothetical protein FL 99.3 1.1E-12 3.7E-17 104.6 6.0 66 250-315 24-89 (115)
122 1fj7_A Nucleolin RBD1, protein 99.3 4.8E-13 1.6E-17 104.4 3.6 63 250-314 16-78 (101)
123 2cpi_A CCR4-NOT transcription 99.3 2.2E-12 7.4E-17 102.8 7.5 66 250-315 14-85 (111)
124 1whx_A Hypothetical protein ri 99.3 2.8E-12 9.4E-17 102.4 8.1 60 250-315 9-68 (111)
125 1x4f_A Matrin 3; structural ge 99.3 3E-12 1E-16 103.1 8.2 59 250-314 24-83 (112)
126 2la4_A Nuclear and cytoplasmic 99.3 3.4E-12 1.1E-16 99.5 8.3 59 250-314 26-84 (101)
127 2hgl_A HNRPF protein, heteroge 99.3 1.3E-12 4.4E-17 108.6 6.0 63 250-314 43-108 (136)
128 2e5j_A Methenyltetrahydrofolat 99.3 6.1E-12 2.1E-16 97.5 9.4 61 250-315 18-78 (97)
129 3d2w_A TAR DNA-binding protein 99.3 2.1E-12 7.2E-17 99.2 6.5 55 250-309 10-64 (89)
130 3lqv_A PRE-mRNA branch site pr 99.3 5.3E-12 1.8E-16 100.7 9.1 62 250-314 7-68 (115)
131 2lea_A Serine/arginine-rich sp 99.3 1.2E-12 3.9E-17 108.4 5.3 65 250-314 46-110 (135)
132 2cpj_A Non-POU domain-containi 99.3 4.1E-12 1.4E-16 98.7 8.2 59 250-314 14-72 (99)
133 1x4c_A Splicing factor, argini 99.3 5.3E-12 1.8E-16 100.0 8.8 58 250-314 14-71 (108)
134 2jvo_A Nucleolar protein 3; nu 99.3 4E-12 1.4E-16 101.0 7.9 58 250-315 30-87 (108)
135 2dgt_A RNA-binding protein 30; 99.3 6.1E-12 2.1E-16 96.4 8.4 57 250-314 9-65 (92)
136 2xnq_A Nuclear polyadenylated 99.3 6.8E-12 2.3E-16 97.7 8.5 58 250-315 21-79 (97)
137 1fxl_A Paraneoplastic encephal 99.3 7.1E-12 2.4E-16 104.6 9.2 64 251-314 2-65 (167)
138 2a3j_A U1 small nuclear ribonu 99.3 6E-12 2E-16 103.4 8.5 62 251-315 29-94 (127)
139 2kvi_A Nuclear polyadenylated 99.3 6.9E-12 2.4E-16 97.1 8.4 57 250-314 9-66 (96)
140 2jvr_A Nucleolar protein 3; RN 99.3 2.8E-12 9.7E-17 102.9 6.2 61 250-314 27-88 (111)
141 1why_A Hypothetical protein ri 99.3 8.3E-12 2.8E-16 96.6 8.5 59 250-314 16-74 (97)
142 2hvz_A Splicing factor, argini 99.3 4E-12 1.4E-16 99.0 6.6 58 252-314 1-58 (101)
143 1x4g_A Nucleolysin TIAR; struc 99.3 5.5E-12 1.9E-16 99.8 7.2 59 250-314 24-82 (109)
144 2fc8_A NCL protein; structure 99.3 9.8E-12 3.4E-16 96.9 8.4 62 250-314 14-75 (102)
145 1b7f_A Protein (SXL-lethal pro 99.3 7E-12 2.4E-16 105.1 7.9 64 251-314 3-66 (168)
146 2cpd_A Apobec-1 stimulating pr 99.3 1.9E-11 6.5E-16 94.9 9.7 57 250-314 14-72 (99)
147 1nu4_A U1A RNA binding domain; 99.3 2.6E-12 8.8E-17 99.2 4.6 62 250-314 7-72 (97)
148 2lcw_A RNA-binding protein FUS 98.9 4.1E-13 1.4E-17 107.6 0.0 65 250-314 6-78 (116)
149 2dnp_A RNA-binding protein 14; 99.3 8.5E-12 2.9E-16 95.2 7.2 58 250-315 8-65 (90)
150 2dgu_A Heterogeneous nuclear r 99.3 8.7E-12 3E-16 97.7 7.3 57 250-314 10-66 (103)
151 2voo_A Lupus LA protein; RNA-b 99.3 8.6E-12 2.9E-16 109.3 8.0 68 249-317 107-174 (193)
152 1fjc_A Nucleolin RBD2, protein 99.3 4E-12 1.4E-16 98.1 5.1 60 250-314 15-74 (96)
153 1wf1_A RNA-binding protein RAL 99.3 1.1E-11 3.6E-16 98.3 7.6 57 250-314 26-83 (110)
154 1x5p_A Negative elongation fac 99.2 2.5E-11 8.5E-16 94.0 9.1 57 250-314 14-70 (97)
155 2qfj_A FBP-interacting repress 99.2 1E-11 3.6E-16 108.4 7.6 66 249-314 26-91 (216)
156 3beg_B Splicing factor, argini 99.2 6.6E-12 2.3E-16 100.7 5.8 59 250-315 15-73 (115)
157 1l3k_A Heterogeneous nuclear r 99.2 1.6E-11 5.4E-16 105.6 8.4 66 250-315 103-168 (196)
158 2hgn_A Heterogeneous nuclear r 99.2 2.3E-12 7.7E-17 107.6 2.9 61 250-313 45-105 (139)
159 3md3_A Nuclear and cytoplasmic 99.2 2.7E-11 9.3E-16 100.9 9.5 65 250-314 86-150 (166)
160 3egn_A RNA-binding protein 40; 99.2 3.2E-12 1.1E-16 106.1 3.6 65 250-315 44-114 (143)
161 2f3j_A RNA and export factor b 99.2 1.4E-11 4.8E-16 106.6 7.6 65 250-315 87-151 (177)
162 2i2y_A Fusion protein consists 99.2 1.5E-11 5.2E-16 102.8 7.5 60 250-314 72-131 (150)
163 3md3_A Nuclear and cytoplasmic 99.2 1.8E-11 6.1E-16 102.1 7.8 62 252-314 1-62 (166)
164 2cq2_A Hypothetical protein LO 99.2 1.1E-11 3.8E-16 100.0 6.1 59 251-315 25-85 (114)
165 1fxl_A Paraneoplastic encephal 99.2 4.9E-11 1.7E-15 99.5 9.9 66 250-315 87-152 (167)
166 2cqh_A IGF-II mRNA-binding pro 99.2 1.3E-11 4.4E-16 94.7 5.9 59 250-315 7-66 (93)
167 3nmr_A Cugbp ELAV-like family 99.2 3.3E-11 1.1E-15 101.4 8.9 65 250-315 94-158 (175)
168 2e5g_A U6 snRNA-specific termi 99.2 3.8E-11 1.3E-15 92.4 8.5 59 250-314 7-65 (94)
169 1wf0_A TDP-43, TAR DNA-binding 99.2 5.4E-12 1.8E-16 95.9 3.6 57 250-311 4-60 (88)
170 1jkg_B TAP; NTF2-like domain, 99.2 1.7E-11 5.7E-16 111.9 7.4 67 1-67 98-170 (250)
171 2g4b_A Splicing factor U2AF 65 99.2 2.4E-11 8.3E-16 102.3 7.8 65 251-315 94-158 (172)
172 2qfj_A FBP-interacting repress 99.2 4.3E-11 1.5E-15 104.5 9.4 65 250-314 124-188 (216)
173 1sjr_A Polypyrimidine tract-bi 99.2 3.9E-11 1.3E-15 102.7 8.6 62 250-315 45-106 (164)
174 3pgw_S U1-70K; protein-RNA com 99.2 2.4E-11 8.3E-16 119.2 8.2 65 250-314 101-165 (437)
175 1b7f_A Protein (SXL-lethal pro 99.2 5.6E-11 1.9E-15 99.5 9.4 66 250-315 88-153 (168)
176 3zzy_A Polypyrimidine tract-bi 99.2 6E-11 2.1E-15 97.8 9.1 61 250-315 27-88 (130)
177 1wg1_A KIAA1579 protein, homol 99.2 2.2E-11 7.6E-16 92.7 6.1 59 250-315 4-62 (88)
178 2j8a_A Histone-lysine N-methyl 99.2 1.8E-11 6.2E-16 100.5 5.8 60 252-311 3-74 (136)
179 2cjk_A Nuclear polyadenylated 99.2 1.9E-11 6.4E-16 102.5 5.9 62 250-311 86-147 (167)
180 2hzc_A Splicing factor U2AF 65 99.2 5.2E-11 1.8E-15 89.8 7.6 58 250-314 5-73 (87)
181 2e44_A Insulin-like growth fac 99.2 4.6E-11 1.6E-15 92.0 6.9 62 250-315 14-76 (96)
182 4f02_A Polyadenylate-binding p 99.2 6.3E-11 2.1E-15 104.6 8.6 63 250-314 102-164 (213)
183 1of5_A MRNA export factor MEX6 99.2 2.4E-11 8.3E-16 108.6 5.9 66 2-67 100-203 (221)
184 2yh0_A Splicing factor U2AF 65 99.2 5.5E-11 1.9E-15 102.4 7.9 66 250-315 113-178 (198)
185 2e5i_A Heterogeneous nuclear r 99.1 1.2E-10 4.1E-15 95.3 8.8 60 250-315 24-84 (124)
186 3tyt_A Heterogeneous nuclear r 99.1 1.5E-10 5.1E-15 102.2 8.6 61 250-315 3-64 (205)
187 3pgw_A U1-A; protein-RNA compl 99.1 2.3E-10 7.8E-15 104.5 8.3 63 250-315 8-74 (282)
188 2bz2_A Negative elongation fac 99.1 2.1E-10 7.2E-15 93.0 7.2 57 250-314 38-94 (121)
189 3tyt_A Heterogeneous nuclear r 99.1 1.4E-10 4.7E-15 102.4 6.4 64 250-315 122-187 (205)
190 3sde_A Paraspeckle component 1 99.1 3.3E-10 1.1E-14 103.1 9.0 62 251-313 96-157 (261)
191 1q40_B MEX67, mRNA export fact 99.1 1.2E-10 4.1E-15 104.0 5.6 66 2-67 106-209 (219)
192 3nv0_A Nuclear RNA export fact 99.0 1.9E-10 6.5E-15 101.8 5.9 65 2-66 109-184 (205)
193 3smz_A Protein raver-1, ribonu 99.0 5.9E-10 2E-14 101.9 9.2 64 251-314 95-158 (284)
194 2adc_A Polypyrimidine tract-bi 99.0 4.2E-10 1.4E-14 100.3 7.8 60 250-314 33-93 (229)
195 2pe8_A Splicing factor 45; RRM 99.0 1E-09 3.5E-14 87.0 9.0 66 250-315 7-78 (105)
196 1fje_B Nucleolin RBD12, protei 99.0 4.8E-10 1.6E-14 94.8 7.5 60 250-314 98-157 (175)
197 3u1l_A PRE-mRNA-splicing facto 99.0 3.8E-10 1.3E-14 102.3 7.3 60 250-315 133-201 (240)
198 3pgw_A U1-A; protein-RNA compl 99.0 2.2E-09 7.6E-14 97.9 12.1 61 250-315 206-266 (282)
199 2diu_A KIAA0430 protein; struc 99.0 1.1E-09 3.8E-14 85.1 7.6 54 252-315 10-68 (96)
200 1fje_B Nucleolin RBD12, protei 99.0 1.2E-10 4.1E-15 98.6 2.2 63 250-314 12-74 (175)
201 3sde_A Paraspeckle component 1 99.0 9.2E-10 3.1E-14 100.1 7.7 59 250-314 21-79 (261)
202 1qm9_A Polypyrimidine tract-bi 99.0 3.4E-10 1.1E-14 97.9 4.3 59 251-314 3-62 (198)
203 2ghp_A U4/U6 snRNA-associated 98.9 1E-09 3.5E-14 100.6 7.4 61 249-311 39-99 (292)
204 2d9o_A DNAJ (HSP40) homolog, s 98.9 4E-09 1.4E-13 82.9 9.4 59 251-314 10-75 (100)
205 2g4b_A Splicing factor U2AF 65 98.9 1.5E-09 5E-14 91.3 7.1 58 250-314 3-71 (172)
206 3smz_A Protein raver-1, ribonu 98.9 1.6E-09 5.3E-14 99.1 7.7 64 250-314 183-247 (284)
207 2ghp_A U4/U6 snRNA-associated 98.9 9.7E-10 3.3E-14 100.8 6.1 64 250-314 209-274 (292)
208 3tht_A Alkylated DNA repair pr 98.9 1.4E-09 4.9E-14 103.4 7.2 60 250-315 17-78 (345)
209 2yh0_A Splicing factor U2AF 65 98.9 2.3E-09 7.8E-14 92.1 6.3 58 250-314 3-71 (198)
210 2dit_A HIV TAT specific factor 98.9 7.4E-09 2.5E-13 82.3 8.3 62 250-315 14-86 (112)
211 1qm9_A Polypyrimidine tract-bi 98.8 7.3E-09 2.5E-13 89.4 7.6 61 250-315 119-180 (198)
212 2adc_A Polypyrimidine tract-bi 98.8 1.1E-08 3.8E-13 91.0 8.8 61 250-315 150-211 (229)
213 1jmt_A Splicing factor U2AF 35 98.8 2.6E-09 8.8E-14 84.4 2.9 59 256-315 20-90 (104)
214 3ue2_A Poly(U)-binding-splicin 98.7 3.6E-08 1.2E-12 79.7 7.6 66 250-315 19-93 (118)
215 3v4m_A Splicing factor U2AF 65 98.7 2.4E-08 8.1E-13 78.9 6.2 65 251-315 5-81 (105)
216 1owx_A Lupus LA protein, SS-B, 98.5 2E-07 6.7E-12 75.7 7.8 60 248-313 15-76 (121)
217 3s6e_A RNA-binding protein 39; 98.3 7.8E-07 2.7E-11 71.3 5.8 47 265-315 31-77 (114)
218 1q42_A MTR2, mRNA transport re 97.9 1.2E-05 4E-10 69.3 4.6 49 2-51 97-146 (201)
219 3dxb_A Thioredoxin N-terminall 97.8 2.9E-05 9.8E-10 68.4 7.3 52 264-315 142-197 (222)
220 2dnr_A Synaptojanin-1; RRM dom 97.3 0.00029 9.8E-09 54.0 5.0 55 251-314 7-69 (91)
221 1ufw_A Synaptojanin 2; RNP dom 96.8 0.00064 2.2E-08 52.4 2.8 55 251-314 15-78 (95)
222 1of5_B MTR2, YKL186C, mRNA tra 96.8 0.0012 4E-08 56.3 4.6 48 3-51 73-121 (184)
223 1whv_A Poly(A)-specific ribonu 95.6 0.036 1.2E-06 42.8 7.1 54 251-313 16-69 (100)
224 3ctr_A Poly(A)-specific ribonu 95.3 0.019 6.5E-07 44.5 4.6 54 251-313 6-59 (101)
225 2l9w_A U4/U6 snRNA-associated- 95.3 0.057 1.9E-06 42.7 7.3 58 251-314 21-83 (117)
226 2dhx_A Poly (ADP-ribose) polym 94.5 0.16 5.6E-06 39.5 8.0 55 250-312 7-66 (104)
227 1wwh_A Nucleoporin 35, nucleop 94.3 0.13 4.5E-06 41.1 7.3 61 250-317 23-83 (119)
228 3pq1_A Poly(A) RNA polymerase; 94.1 0.024 8.3E-07 55.6 3.0 57 250-312 52-108 (464)
229 1uw4_A UPF3X; nonsense mediate 93.5 0.31 1.1E-05 37.0 7.8 62 252-314 2-66 (91)
230 3p3d_A Nucleoporin 53; structu 82.0 0.72 2.5E-05 37.4 2.5 65 252-317 8-86 (132)
231 1wey_A Calcipressin 1; structu 75.6 3.9 0.00013 31.7 4.8 57 252-314 6-67 (104)
232 2l08_A Regulator of nonsense t 75.5 2.8 9.5E-05 32.1 3.9 62 250-313 8-73 (97)
233 3d45_A Poly(A)-specific ribonu 72.8 7.4 0.00025 38.3 7.3 54 251-313 440-493 (507)
234 3fka_A Uncharacterized NTF-2 l 52.5 14 0.00048 28.5 4.1 47 9-64 73-119 (120)
235 4i4k_A Uncharacterized protein 51.3 71 0.0024 24.9 8.3 39 21-59 93-134 (143)
236 3duk_A NTF2-like protein of un 31.5 50 0.0017 25.5 4.2 25 40-64 99-123 (125)
237 3d9r_A Ketosteroid isomerase-l 30.5 1.4E+02 0.0047 22.0 6.6 24 42-65 109-133 (135)
238 3blz_A NTF2-like protein of un 22.2 95 0.0032 23.5 4.2 27 40-66 100-126 (128)
239 3gzr_A Uncharacterized protein 21.7 2.8E+02 0.0097 21.5 8.8 29 40-68 105-133 (146)
240 2r4i_A Uncharacterized protein 21.4 2.2E+02 0.0075 20.5 6.1 18 42-59 99-116 (123)
241 3hx8_A MLR2180 protein, putati 20.1 2.5E+02 0.0086 20.2 7.6 20 44-63 104-124 (129)
No 1
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=99.85 E-value=4.8e-22 Score=166.73 Aligned_cols=68 Identities=35% Similarity=0.608 Sum_probs=61.5
Q ss_pred CCCCccc--eEEEEeeecccCCCcEEEEEEEEEEecCCccccceeEEEEeeeeC---CeEEEEcceEeeecccc
Q 021044 1 MSLNYSG--IEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE---KGYFVLNDIFHFIGEEQ 69 (318)
Q Consensus 1 ~sl~~~~--~~i~~~D~q~s~~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~---~~y~v~nDifr~~~~~~ 69 (318)
++|||++ ++|.++|||+++++||||+|+|.|+.++++ +|+|+|+|+|+|++ ++|||+||||||+|+.+
T Consensus 67 ~~Lp~~~~~~~I~tvD~Qps~~~gilI~V~G~l~~~~~~-~~~F~QtF~L~p~~~~~~~y~V~nDifR~~de~~ 139 (140)
T 3q90_A 67 MSQNFTNCHTKIRHVDAHATLNDGVVVQVMGLLSNNNQA-LRRFMQTFVLAPEGSVANKFYVHNDIFRYQDEVF 139 (140)
T ss_dssp HHTCCCSCEEEEEEEEEEECGGGCEEEEEEEEEECTTCC-CEEEEEEEEEEECSSSTTCEEEEEEEEEEGGGC-
T ss_pred HhCCCccceEEEEeEEEEEeCCCCEEEEEEEEEecCCCC-ccEEEEEEEEeecCCCCCCEEEEEEEeEeehhhc
Confidence 4799965 589999999999999999999999999864 79999999999996 89999999999999864
No 2
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=99.84 E-value=1.5e-21 Score=159.54 Aligned_cols=64 Identities=36% Similarity=0.613 Sum_probs=58.6
Q ss_pred CCCCccc--eEEEEeeecccCCCcEEEEEEEEEEecCCccccceeEEEEeeeeC-CeEEEEcceEeee
Q 021044 1 MSLNYSG--IEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE-KGYFVLNDIFHFI 65 (318)
Q Consensus 1 ~sl~~~~--~~i~~~D~q~s~~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~-~~y~v~nDifr~~ 65 (318)
++|||++ ++|.++|||+++++||||+|+|.|+.++++ .|+|+|+|+|+|++ ++|||+||||||+
T Consensus 54 ~~Lpf~~~~~~I~t~D~Qp~~~~gili~V~G~l~~~~~~-~r~F~QtF~L~p~~~~~y~V~nDifR~q 120 (120)
T 3ujm_A 54 QQLNFNDCHAKISQVDAQATLGNGVVVQVTGELSNDGQP-MRRFTQTFVLAAQSPKKYYVHNDIFRYQ 120 (120)
T ss_dssp HHHCCCSCEEEEEEEEEEEEGGGEEEEEEEEEEESTTCC-CEEEEEEEEEEECSTTCEEEEEEEEEEC
T ss_pred HcCCCcceEEEEecccceEcCCCCEEEEEEEEEEeCCCC-CceEEEEEEEEEcCCCCEEEEEEEEecC
Confidence 3689985 479999999999999999999999999875 78999999999997 8999999999996
No 3
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.82 E-value=1.6e-20 Score=159.66 Aligned_cols=65 Identities=29% Similarity=0.465 Sum_probs=60.8
Q ss_pred CCCCccceEEEEeeecccC-------CCcEEEEEEEEEEecCCccccceeEEEEeeeeCCeEEEEcceEeeec
Q 021044 1 MSLNYSGIEIKTAHSLESW-------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHFIG 66 (318)
Q Consensus 1 ~sl~~~~~~i~~~D~q~s~-------~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~~~y~v~nDifr~~~ 66 (318)
++||+++++|.++|||+++ ++||||+|+|.|+.++++ .|+|+|+|+|+|++++|||+||||||+|
T Consensus 83 ~~Lp~~~h~I~s~D~qp~~~~~~~q~~~~ilI~V~G~l~~~~~~-~r~F~QtFvL~p~~~~y~V~NDifR~vd 154 (154)
T 3nv0_B 83 KALPSTQHDIQSLDAQRLPEGVTGDMSGGMLLNVAGAVTVDGDS-KRAFTQTLLLGVEDGKYKVKSDRFRYVD 154 (154)
T ss_dssp HHSCCEEEEEEEEEEEECCTTCCGGGTTCEEEEEEEEEEETTSC-CEEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred HhCCCeEEEEEEEEEEEcCccccCCCCCeEEEEEEEEEEECCCC-ceeEEEEEEEEEeCCEEEEEeeEEEecC
Confidence 3689999999999999998 679999999999999875 7999999999999999999999999986
No 4
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=99.81 E-value=3.9e-20 Score=152.62 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=61.0
Q ss_pred CCCcc--ceEEEEeeecccCCCcEEEEEEEEEEecCCccccceeEEEEeeeeCCeEEEEcceEeeeccc
Q 021044 2 SLNYS--GIEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHFIGEE 68 (318)
Q Consensus 2 sl~~~--~~~i~~~D~q~s~~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~~~y~v~nDifr~~~~~ 68 (318)
+|||+ +++|.++|||++.++||||+|+|.|+.++++ .|+|+|+|+|+|++++|||+||||||++.+
T Consensus 58 ~Lp~~~~~h~i~t~d~qp~~~~~ili~V~G~~~~~~~~-~~~F~qtF~L~p~~~~~~I~nD~fr~~~~~ 125 (127)
T 1gy6_A 58 SLPFQKIQHSITAQDHQPTPDSCIISMVVGQLKADEDP-IMGFHQMFLLKNINDAWVCTNDMFRLALHN 125 (127)
T ss_dssp HCSCSCEEEEEEEEEEEECTTSCEEEEEEEEEEETTSC-CEEEEEEEEEEEETTEEEEEEEEEEECCCC
T ss_pred hCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECCCC-cceEeEEEEEEEeCCEEEEEEEEEEEEccc
Confidence 68996 4689999999999999999999999998875 799999999999999999999999999875
No 5
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=99.81 E-value=4.4e-20 Score=151.90 Aligned_cols=66 Identities=32% Similarity=0.555 Sum_probs=59.6
Q ss_pred CCCccc--eEEEEeeecccC-CCcEEEEEEEEEEecCCccccceeEEEEeeeeCCeEEEEcceEeeecc
Q 021044 2 SLNYSG--IEIKTAHSLESW-NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHFIGE 67 (318)
Q Consensus 2 sl~~~~--~~i~~~D~q~s~-~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~~~y~v~nDifr~~~~ 67 (318)
+|||++ ++|.++|||+++ ++||||+|+|.|+.+++...|+|+|+|+|+|++++|||+||||||++.
T Consensus 56 ~Lp~~~~~h~i~t~D~qp~~~~~gili~V~G~~~~~~~~~~~~F~qtF~L~p~~~~~~I~nD~fr~~~~ 124 (125)
T 1gy7_A 56 SLPFQKVQHRITTLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDGNSYYVFNDIFRLNYS 124 (125)
T ss_dssp HSCCSCEEEEEEEEEEEESSTTSCEEEEEEEEEEETTCSSCEEEEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred hCCCcceEEEEEEEEEEEecCCCeEEEEEEEEEEECCCCCCccEeEEEEEEEeCCEEEEEEEEEEEecC
Confidence 689876 589999999996 589999999999998873579999999999999999999999999873
No 6
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=99.80 E-value=4.9e-20 Score=152.40 Aligned_cols=64 Identities=36% Similarity=0.575 Sum_probs=58.7
Q ss_pred CCCccc--eEEEEeeecccCCCcEEEEEEEEEEecCCccccceeEEEEeeeeC-CeEEEEcceEeeec
Q 021044 2 SLNYSG--IEIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE-KGYFVLNDIFHFIG 66 (318)
Q Consensus 2 sl~~~~--~~i~~~D~q~s~~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~-~~y~v~nDifr~~~ 66 (318)
+|||++ ++|.++|||++.++||||+|+|.|+.++++ .|+|+|+|+|+|++ ++|||+||||||++
T Consensus 62 ~Lp~~~~~h~i~t~D~qp~~~~gilI~V~G~~~~~~~~-~~~F~qtF~L~p~~~~~y~I~nD~fR~~~ 128 (129)
T 1zo2_A 62 SLNFQRVQFEITRVDCQPSPNNGSIVFVTGDVRIDDGQ-PLKFSQVFNLMPSGNGGFMIFNDLFRLNL 128 (129)
T ss_dssp HHCCSCEEEEEEEEEEEECTBSSEEEEEEEEEEETTCC-CEEEEEEEEEEECSSSCEEEEEEEEEEC-
T ss_pred hCCCcceEEEEEEEEEEEeCCCcEEEEEEEEEEECCCC-cceEEEEEEEEEcCCCcEEEEeEEEEEec
Confidence 689965 689999999999999999999999999875 79999999999998 89999999999986
No 7
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=99.77 E-value=2.7e-19 Score=152.30 Aligned_cols=67 Identities=24% Similarity=0.352 Sum_probs=58.7
Q ss_pred CC--Cccc--eEEEEeeecccCC--CcEEEEEEEEEEecCCccccceeEEEEeeeeC--CeEEEEcceEeeecccc
Q 021044 2 SL--NYSG--IEIKTAHSLESWN--GGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE--KGYFVLNDIFHFIGEEQ 69 (318)
Q Consensus 2 sl--~~~~--~~i~~~D~q~s~~--~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~--~~y~v~nDifr~~~~~~ 69 (318)
+| ||++ +.|.++|||++++ +||||+|+|.|+.++++ .|+|+|+|+|+|++ ++|||+||||||++++.
T Consensus 77 ~L~~pf~~~~h~I~s~D~q~~~~~~~~ilI~V~G~~~~~~~~-~r~F~qtFvL~p~~~~~~y~I~ND~fr~~~~~~ 151 (154)
T 2qiy_A 77 RNDAKVRSLKLKLDTIDFQYTGHLHKSILIMATGEMFWTGTP-VYKFCQTFILLPSSNGSTFDITNDIIRFISNSF 151 (154)
T ss_dssp HTHHHHTTEEEEEEEEEEEEESGGGCEEEEEEEEEEEETTCC-CEEEEEEEEEEECC---CEEEEEEEEEEECC--
T ss_pred hccCCCCceEEEEEEEEEEEccCCCCEEEEEEEEEEEECCCC-CceEEEEEEEEEeCCCCcEEEEEEEEEEEccee
Confidence 57 8765 5899999999987 99999999999998875 79999999999997 59999999999999864
No 8
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=99.76 E-value=9.8e-19 Score=146.52 Aligned_cols=65 Identities=28% Similarity=0.379 Sum_probs=60.0
Q ss_pred CCCccceEEEEeeecccC------CCcEEEEEEEEEEecCCccccceeEEEEeeeeC----CeEEEEcceEeeecc
Q 021044 2 SLNYSGIEIKTAHSLESW------NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQE----KGYFVLNDIFHFIGE 67 (318)
Q Consensus 2 sl~~~~~~i~~~D~q~s~------~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~----~~y~v~nDifr~~~~ 67 (318)
+|||++++|.++|||+++ ++||||+|+|.|+.++++ .|+|+|+|+|+|++ ++|||+||||||+++
T Consensus 64 ~Lp~~~h~i~s~d~q~~~~~~~~~~~~ilI~V~G~~~~~~~~-~r~F~qtF~L~p~~~p~~~~~~I~nD~frl~~~ 138 (140)
T 1jkg_A 64 MLPSSEFQISVVDCQPVHDEATPSQTTVLVVICGSVKFEGNK-QRDFNQNFILTAQASPSNTVWKIASDCFRFQDW 138 (140)
T ss_dssp HSCCEEEEEEEEEEEECCTTTSTTCCEEEEEEEEEEEETTSC-CEEEEEEEEEEEECCSSSCEEEEEEEEEEETTT
T ss_pred hCCCceeEEEEEEEEEcCCcccCCCCeEEEEEEEEEEECCCC-ceeeeEEEEEEecCCCCCCeEEEEeeEEEeecC
Confidence 699999999999999997 589999999999999875 79999999999974 899999999999986
No 9
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.5e-15 Score=119.36 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=61.2
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++++|||+|||.++|+++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|++||+.|.
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~ln 82 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLN 82 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhC
Confidence 367899999999999999999999999999999887777778889999999999999999999875
No 10
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=1.4e-14 Score=110.02 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=60.6
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.+..
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~ 75 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEH 75 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCC
Confidence 3568999999999999999999999999999998877767788899999999999999999987543
No 11
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.54 E-value=2.1e-14 Score=114.93 Aligned_cols=66 Identities=23% Similarity=0.348 Sum_probs=61.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+||++++++++|+++|++||.|..+.|..+..+++++|||||+|.+.++|++||+.|..
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng 70 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHL 70 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCC
Confidence 358899999999999999999999999999998887777788999999999999999999998863
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=6.9e-14 Score=107.62 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=60.5
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 78 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 356899999999999999999999999999999887766677789999999999999999999875
No 13
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.50 E-value=8.8e-14 Score=111.13 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=60.5
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 78 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 367999999999999999999999999999998887666678889999999999999999999875
No 14
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=2.4e-14 Score=114.05 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=58.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhc
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 316 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~ 316 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..+|.++|||||+|.+.++|.+||+.+...
T Consensus 24 ~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~ 90 (109)
T 2rs2_A 24 SGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 90 (109)
T ss_dssp --CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCc
Confidence 5689999999999999999999999999999877655566888999999999999999999887543
No 15
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.5e-14 Score=109.74 Aligned_cols=64 Identities=20% Similarity=0.294 Sum_probs=59.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+..
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 77 (103)
T 2cqg_A 14 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQR 77 (103)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHSC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHcC
Confidence 5689999999999999999999999999999988776667888999999999999999999863
No 16
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.50 E-value=2.6e-14 Score=109.59 Aligned_cols=64 Identities=11% Similarity=0.202 Sum_probs=57.0
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCC--CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG--~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.+|||||||.++++++|+++|++|| .|..+.+..+..+|.++|||||+|.+.++|++||+.|..
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g 67 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPK 67 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGG
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCC
Confidence 5799999999999999999999999 999988877777888899999999999999999998864
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.50 E-value=7.4e-14 Score=104.79 Aligned_cols=63 Identities=22% Similarity=0.357 Sum_probs=58.8
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|++.|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhc
Confidence 689999999999999999999999999999887776778889999999999999999999875
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.50 E-value=8e-15 Score=113.21 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=56.6
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCC-CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG-~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
.+|||+|||.++|+++|+++|++|| .|..++|..+..++.++|||||+|.+.++|++||+.+
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~ 64 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEAN 64 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhc
Confidence 6799999999999999999999999 7999877655667888999999999999999999876
No 19
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.50 E-value=7.5e-14 Score=112.05 Aligned_cols=66 Identities=23% Similarity=0.511 Sum_probs=59.9
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 103 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMN 103 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcC
Confidence 357999999999999999999999999999998776665677889999999999999999999875
No 20
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.49 E-value=2.4e-14 Score=112.27 Aligned_cols=66 Identities=17% Similarity=0.206 Sum_probs=60.9
Q ss_pred cceeeEeccCCC------CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPP------SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~------~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||. ++++++|+++|++||.|..+.|.++..+++++|||||+|.+.++|++||+.|..
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng 76 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHG 76 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTT
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 999999999999999999998877777788899999999999999999998863
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.49 E-value=5.7e-14 Score=112.85 Aligned_cols=63 Identities=25% Similarity=0.416 Sum_probs=56.3
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.++|||||||.++++++|+++|++||.|..+.|..+. +.++|||||+|.+.++|++||+.|..
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~ 67 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNG 67 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCC
Confidence 3689999999999999999999999999998876553 45799999999999999999998753
No 22
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.49 E-value=1.7e-14 Score=112.73 Aligned_cols=66 Identities=11% Similarity=0.292 Sum_probs=57.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC--eEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE--LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~--I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
...+|||+|||+++|+++|+++|++||. +..+++..+..++.+||||||+|.+.++|++||+.|..
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng 75 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQS 75 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcC
Confidence 5678999999999999999999999996 45655544555678899999999999999999999864
No 23
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.9e-14 Score=112.45 Aligned_cols=68 Identities=18% Similarity=0.351 Sum_probs=60.7
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhc
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 316 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~ 316 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.+..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 82 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 82 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCc
Confidence 36799999999999999999999999999999877655566788999999999999999999987643
No 24
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.49 E-value=5.2e-14 Score=110.75 Aligned_cols=66 Identities=14% Similarity=0.266 Sum_probs=59.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 12 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 77 (106)
T 2dgp_A 12 DAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHE 77 (106)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 568999999999999999999999999999987765556678899999999999999999998864
No 25
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=8.5e-14 Score=109.07 Aligned_cols=66 Identities=20% Similarity=0.336 Sum_probs=60.7
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|.....++.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 78 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVS 78 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcC
Confidence 367999999999999999999999999999999887666678889999999999999999999875
No 26
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.49 E-value=9.5e-14 Score=105.09 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=59.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 69 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMG 69 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 45899999999999999999999999999998887666678889999999999999999999875
No 27
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.7e-14 Score=109.51 Aligned_cols=65 Identities=25% Similarity=0.428 Sum_probs=58.6
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEe-CCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIR-SRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~-~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+ ..++.++|||||+|.+.++|++||+.|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 78 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNAL 78 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHh
Confidence 35689999999999999999999999999999876544 447778999999999999999999988
No 28
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.8e-14 Score=111.13 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=56.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
..++|||||||.++|+++|+++|++||.|..+.|..+.. +.++|||||+|.+.++|.+||.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~ 70 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE 70 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH
Confidence 568999999999999999999999999999988765554 7889999999999999999998
No 29
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.49 E-value=1.3e-13 Score=108.17 Aligned_cols=65 Identities=22% Similarity=0.277 Sum_probs=58.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+. ++.++|||||+|.+.++|.+||+.|..
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g 78 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHG 78 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcC
Confidence 56899999999999999999999999999998876554 677799999999999999999998863
No 30
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=8.4e-14 Score=110.31 Aligned_cols=65 Identities=25% Similarity=0.409 Sum_probs=59.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.+.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 56899999999999999999999999999998776666677789999999999999999999885
No 31
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.3e-14 Score=105.86 Aligned_cols=65 Identities=18% Similarity=0.450 Sum_probs=59.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALK 68 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhc
Confidence 45899999999999999999999999999998887666678889999999999999999999875
No 32
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.48 E-value=2.9e-13 Score=111.67 Aligned_cols=66 Identities=20% Similarity=0.390 Sum_probs=60.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 106 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNG 106 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 568999999999999999999999999999998877777778899999999999999999998753
No 33
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=106.68 Aligned_cols=64 Identities=23% Similarity=0.306 Sum_probs=58.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|.+||+.|.
T Consensus 16 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 79 (100)
T 2do4_A 16 EKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMD 79 (100)
T ss_dssp CCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998876554 67789999999999999999999875
No 34
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.6e-13 Score=107.85 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=60.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.+++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 86 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLN 86 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhc
Confidence 56899999999999999999999999999999887776778889999999999999999999875
No 35
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.48 E-value=1.2e-13 Score=110.48 Aligned_cols=65 Identities=20% Similarity=0.514 Sum_probs=60.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 88 (115)
T 2cpz_A 24 EGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88 (115)
T ss_dssp TTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999999887766678889999999999999999998875
No 36
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.2e-13 Score=107.43 Aligned_cols=64 Identities=28% Similarity=0.496 Sum_probs=58.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+ +.
T Consensus 9 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~ 72 (99)
T 2dgs_A 9 KSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MH 72 (99)
T ss_dssp SCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hC
Confidence 56899999999999999999999999999998776555677789999999999999999998 53
No 37
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1e-13 Score=108.88 Aligned_cols=65 Identities=25% Similarity=0.259 Sum_probs=59.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 78 (105)
T 1x5u_A 14 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMD 78 (105)
T ss_dssp TTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998776555577889999999999999999999875
No 38
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=106.11 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=59.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 15 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 80 (94)
T 2e5h_A 15 SKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINN 80 (94)
T ss_dssp CTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCC
Confidence 568999999999999999999999999999987765556677899999999999999999998753
No 39
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.2e-13 Score=107.37 Aligned_cols=66 Identities=26% Similarity=0.230 Sum_probs=59.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++||+.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 72 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDG 72 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCC
Confidence 568999999999999999999999999999987765555777899999999999999999988763
No 40
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=108.63 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=59.1
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHH
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 312 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~a 312 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~ 77 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 77 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh
Confidence 3679999999999999999999999999999998877666788899999999999999999987
No 41
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.47 E-value=9.9e-14 Score=104.55 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=59.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++.|.
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 70 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 70 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999999999998877666777789999999999999999998875
No 42
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=2.9e-14 Score=105.51 Aligned_cols=64 Identities=20% Similarity=0.304 Sum_probs=58.0
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++.+..
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~ 64 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRH 64 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCC
Confidence 5799999999999999999999999999987765556678899999999999999999998763
No 43
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=107.25 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=60.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeE-EeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELS-SEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~-~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|. .+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 73 (99)
T 2div_A 8 MAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKIN 73 (99)
T ss_dssp SSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHc
Confidence 568999999999999999999999999999 98887766678889999999999999999999875
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=1.8e-13 Score=107.21 Aligned_cols=64 Identities=22% Similarity=0.412 Sum_probs=58.3
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+ ++..+|||||+|.+.++|.+||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2d9p_A 13 YQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMN 76 (103)
T ss_dssp SSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhC
Confidence 36799999999999999999999999999999877554 67789999999999999999999875
No 45
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=2.1e-13 Score=105.01 Aligned_cols=65 Identities=23% Similarity=0.350 Sum_probs=59.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLN 68 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhC
Confidence 45899999999999999999999999999998877666678889999999999999999999875
No 46
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.2e-13 Score=110.53 Aligned_cols=65 Identities=18% Similarity=0.377 Sum_probs=58.9
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+..
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~ 89 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAAR 89 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhC
Confidence 36689999999999999999999999999999888666667788999999999999999999873
No 47
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.46 E-value=2.2e-13 Score=105.98 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=59.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEE--------eEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSS--------EGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~--------~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|.. +.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~ 84 (99)
T 2la6_A 12 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 84 (99)
T ss_dssp CCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 4589999999999999999999999999999 8887766778889999999999999999999875
No 48
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.46 E-value=2.4e-13 Score=108.17 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=60.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.+..
T Consensus 25 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g 90 (108)
T 2jrs_A 25 GPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNG 90 (108)
T ss_dssp SCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCC
Confidence 468999999999999999999999999999998877777788899999999999999999998753
No 49
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.8e-13 Score=105.32 Aligned_cols=64 Identities=23% Similarity=0.299 Sum_probs=58.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+.. +.++|||||+|.+.++|++||+.|.
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~ 78 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLN 78 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhC
Confidence 568999999999999999999999999999988765554 7779999999999999999999875
No 50
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=1.5e-13 Score=106.39 Aligned_cols=64 Identities=22% Similarity=0.368 Sum_probs=58.2
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+||+.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 65 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLN 65 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4789999999999999999999999999998776555567789999999999999999999875
No 51
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=116.50 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=59.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCC--CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG--~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||||||+++++++|+++|++|| .|..+.|..+..+|.++|||||+|.+.++|++||+.|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~ln 120 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLP 120 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 568999999999999999999999999 99999887777788889999999999999999999975
No 52
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=108.52 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 76 (103)
T 2dnm_A 12 GMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMD 76 (103)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHS
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999998776555667789999999999999999999875
No 53
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=107.32 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 11 ~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 1x5s_A 11 DEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMN 75 (102)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998776555667789999999999999999998876
No 54
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.5e-13 Score=108.42 Aligned_cols=65 Identities=20% Similarity=0.171 Sum_probs=56.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEE-eEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSS-EGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~-~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||+++++++|+++|++||.|.. +.|..+ .+++++|||||+|.+.++|++||+....
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~ 79 (104)
T 1wg5_A 14 NDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKE 79 (104)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcc
Confidence 5689999999999999999999999999987 555433 5777899999999999999999987443
No 55
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=1.4e-13 Score=104.58 Aligned_cols=64 Identities=20% Similarity=0.377 Sum_probs=58.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|| .+.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~ 68 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALD 68 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcC
Confidence 5689999999999999999999999999999988766667888999999999999999999 664
No 56
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.6e-13 Score=106.46 Aligned_cols=65 Identities=23% Similarity=0.189 Sum_probs=59.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 45899999999999999999999999999887777777778889999999999999999999886
No 57
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.45 E-value=1e-13 Score=104.10 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=55.4
Q ss_pred eeeEeccCCCCC------CHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 252 KSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 252 ~~IfVgnLp~~~------te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
++|||+|||.++ ++++|+++|++||.|..+.+ ...+|.++|||||+|.+.++|.+||+.|..
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i--~~~~g~~~g~afV~f~~~~~A~~Ai~~lng 69 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFY--PEEDGKTKGYIFLEYASPAHAVDAVKNADG 69 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEEC--CCBTTBCCCEEEEEESSHHHHHHHHTTSSS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEe--cCCCCcEeEEEEEEECCHHHHHHHHHHhcC
Confidence 689999999999 77999999999999999755 356778899999999999999999998753
No 58
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=106.04 Aligned_cols=65 Identities=18% Similarity=0.333 Sum_probs=58.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCC---CCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSR---KDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~---~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+.. ++.++|||||+|.+.++|++||+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~ 71 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQ 71 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHST
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhC
Confidence 458999999999999999999999999999988876654 33678999999999999999999875
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.7e-13 Score=105.39 Aligned_cols=64 Identities=25% Similarity=0.347 Sum_probs=56.7
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE--HTSNDPYCFVEFYEHRDAAAALAAMN 76 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECC--CCSSCCEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEec--CCCCCCEEEEEECCHHHHHHHHHHhC
Confidence 36799999999999999999999999999999766433 44478999999999999999999875
No 60
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.9e-14 Score=108.37 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 75 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998776555677789999999999999999999875
No 61
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=105.98 Aligned_cols=65 Identities=28% Similarity=0.414 Sum_probs=59.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhc-CCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKK-FGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~-fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++ ||.|..+.|..+. ++.++|||||+|.+.++|.+||+.|..
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g 73 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQG 73 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccC
Confidence 5689999999999999999999999 9999999886655 777899999999999999999998864
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.7e-13 Score=109.35 Aligned_cols=65 Identities=15% Similarity=0.309 Sum_probs=58.4
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++|| .|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 87 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLT 87 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcC
Confidence 35789999999999999999999999999999877655556778999999999999999999 664
No 63
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.44 E-value=9.5e-14 Score=113.99 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=58.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEE--eEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSS--EGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~--~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||||||+++++++|+++|++||.|.. ++|.++..++.++|||||+|.+. +|.+||+.|..
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g 88 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQA 88 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcC
Confidence 5689999999999999999999999999976 77766666788899999999999 99999999865
No 64
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=5.2e-13 Score=104.53 Aligned_cols=64 Identities=20% Similarity=0.365 Sum_probs=56.6
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+ .+.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~--~~~~~g~afV~f~~~~~a~~A~~~l~ 76 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN--ERGSKGFGFVTFENSADADRAREKLH 76 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECC--TTTTCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEec--CCCCcEEEEEEECCHHHHHHHHHHhC
Confidence 36799999999999999999999999999999766433 33479999999999999999999875
No 65
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=4.3e-13 Score=105.13 Aligned_cols=63 Identities=24% Similarity=0.384 Sum_probs=57.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++|| |..+.|..+..++.++|||||+|.+.++|++|| .|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 76 (103)
T 2dng_A 14 PPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYD 76 (103)
T ss_dssp SCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhC
Confidence 568999999999999999999999997 999888777767888999999999999999999 664
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=4.6e-13 Score=106.66 Aligned_cols=65 Identities=18% Similarity=0.170 Sum_probs=58.6
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|.+||.|..+.|..+. ++.++|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 77 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFN 77 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 356899999999999999999999999999998876554 57779999999999999999999875
No 67
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.6e-13 Score=107.38 Aligned_cols=65 Identities=23% Similarity=0.382 Sum_probs=60.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.....++.++|||||+|.+.++|.+||+.|.
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 71 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLN 71 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999999887776778889999999999999999999875
No 68
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.44 E-value=2.9e-13 Score=107.21 Aligned_cols=65 Identities=26% Similarity=0.356 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 89 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALN 89 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999998775555677789999999999999999999875
No 69
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.44 E-value=3.2e-13 Score=111.02 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=59.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 45 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~ln 109 (129)
T 2kxn_B 45 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERAN 109 (129)
T ss_dssp CSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998887666677889999999999999999999875
No 70
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.43 E-value=1.5e-13 Score=105.91 Aligned_cols=65 Identities=23% Similarity=0.193 Sum_probs=59.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++..+|||||+|.+.++|++||+.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~ 78 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLN 78 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 45899999999999999999999999999988777777778889999999999999999999875
No 71
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=5.6e-13 Score=107.83 Aligned_cols=65 Identities=22% Similarity=0.339 Sum_probs=59.4
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|| .|.
T Consensus 34 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~ 98 (124)
T 2jwn_A 34 IDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMD 98 (124)
T ss_dssp HHHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcC
Confidence 35789999999999999999999999999999988777678888999999999999999999 554
No 72
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.43 E-value=2.1e-13 Score=103.30 Aligned_cols=65 Identities=22% Similarity=0.331 Sum_probs=57.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCC-CccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDV-GICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~-~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
+.++|||+|||.++++++|+++|++||.|..+.+..+..++. ++|||||+|.+.++|++|++.|.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 68 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMD 68 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcC
Confidence 458999999999999999999999999999987766555444 68999999999999999999875
No 73
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.42 E-value=1.1e-13 Score=102.05 Aligned_cols=59 Identities=19% Similarity=0.389 Sum_probs=54.1
Q ss_pred eeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 253 ~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
+|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|++|++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~ 59 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE 59 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH
Confidence 58999999999999999999999999998776555577889999999999999999987
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=1.8e-13 Score=105.61 Aligned_cols=65 Identities=20% Similarity=0.411 Sum_probs=58.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEe-EEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSE-GVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~-~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+ .|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 69 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcC
Confidence 45899999999999999999999999999998 776555677789999999999999999999875
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.42 E-value=6.5e-13 Score=101.62 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=57.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.. +++.++|||||+|.+.++|++||+.|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~--~~g~~~g~afV~f~~~~~a~~a~~~l~ 69 (92)
T 2dgv_A 7 GACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKM--ENGKSKGCGVVKFESPEVAERACRMMN 69 (92)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEE--SSSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc--cCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 468999999999999999999999999999987653 567789999999999999999999875
No 76
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.42 E-value=5.4e-14 Score=103.64 Aligned_cols=64 Identities=23% Similarity=0.427 Sum_probs=56.6
Q ss_pred eeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhc
Q 021044 253 SVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILM 316 (318)
Q Consensus 253 ~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~ 316 (318)
+|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.....
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~ 64 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 64 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCe
Confidence 5899999999999999999999999999877655566778999999999999999999865443
No 77
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=107.67 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=58.9
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeE--------EeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELS--------SEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~--------~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|. .+.|..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3679999999999999999999999999998 56666555677889999999999999999999875
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.3e-13 Score=105.30 Aligned_cols=63 Identities=22% Similarity=0.345 Sum_probs=56.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCC-CCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK-DVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~-~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++|| |..+.|..+..+ +.++|||||+|.+.++|++|| .|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~ 77 (104)
T 1wi8_A 14 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 77 (104)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGG
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcC
Confidence 458999999999999999999999999 999877655554 778999999999999999999 765
No 79
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=5.8e-13 Score=104.86 Aligned_cols=64 Identities=27% Similarity=0.282 Sum_probs=58.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|.... ++.++|||||+|.+.++|++||+.|.
T Consensus 28 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~ 91 (107)
T 3ulh_A 28 TGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYN 91 (107)
T ss_dssp CSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998886655 77789999999999999999999875
No 80
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.42 E-value=5.7e-13 Score=109.52 Aligned_cols=65 Identities=22% Similarity=0.365 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 126 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMN 126 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHST
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998776555677789999999999999999999876
No 81
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.9e-13 Score=107.79 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=53.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||||||+++++++|+++|++||.|..+.|. . .||||||+|++.++|.+||+.+.
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~--~----~kGfaFVeF~~~~~A~~Ai~~l~ 73 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML--K----GKNQAFIEMNTEEAANTMVNYYT 73 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEE--T----TTTEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--c----CCCEEEEEECCHHHHHHHHHHhc
Confidence 56899999999999999999999999999998664 2 27999999999999999999764
No 82
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=9.7e-13 Score=104.85 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=59.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+. ++.++|||||+|.+.++|.+||+.|..
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g 88 (114)
T 1x5o_A 24 DPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNG 88 (114)
T ss_dssp CTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 56899999999999999999999999999999886655 777899999999999999999998763
No 83
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=1.3e-13 Score=110.50 Aligned_cols=64 Identities=28% Similarity=0.578 Sum_probs=55.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCC---CCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK---DVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~---~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|. +.+.++..+ |.++|||||+|.+.++|++||+.+.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~ 73 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL 73 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh
Confidence 458999999999999999999999999999 545444333 5779999999999999999999883
No 84
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=3e-13 Score=107.57 Aligned_cols=63 Identities=21% Similarity=0.380 Sum_probs=56.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.. +++.++|||||+|.+.++|++|++.|.
T Consensus 28 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~--~~~~~kg~afV~f~~~~~A~~Ai~~l~ 90 (109)
T 2err_A 28 QPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIF--NERGSKGFGFVTFENSADADRAREKLH 90 (109)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECC--BTTBCTTEEEEECCCSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEE--CCCCCceEEEEEECCHHHHHHHHHHcC
Confidence 568999999999999999999999999999976543 344579999999999999999999875
No 85
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=9.8e-13 Score=104.33 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=52.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. . .||||||+|++.++|.+||+.|.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~--~----~kg~aFVef~~~~~A~~Ai~~l~ 72 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMM--P----FKRQALVEFENIDSAKECVTFAA 72 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEE--T----TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--C----CCCEEEEEECCHHHHHHHHHHhc
Confidence 45899999999999999999999999999997553 2 37999999999999999999874
No 86
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=107.89 Aligned_cols=64 Identities=19% Similarity=0.289 Sum_probs=58.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+. ++.++|||||+|.+.++|++||+.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~ 69 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMN 69 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999998775444 77789999999999999999999875
No 87
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.40 E-value=5.8e-13 Score=108.02 Aligned_cols=66 Identities=21% Similarity=0.315 Sum_probs=59.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 86 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 86 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 568999999999999999999999999999987765656777899999999999999999998753
No 88
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.40 E-value=4e-13 Score=103.35 Aligned_cols=59 Identities=12% Similarity=0.081 Sum_probs=54.0
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
+..||||||++.+|+++|+++|.+||+|..+.+.+ +||||||+|.+.++|.+|+++|+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~ 65 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNN 65 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTT
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcC
Confidence 47899999999999999999999999999987642 589999999999999999999863
No 89
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.1e-13 Score=104.63 Aligned_cols=59 Identities=22% Similarity=0.301 Sum_probs=52.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. . .||||||+|.+.++|.+||+.+.
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~--~----~kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILML--K----GKNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEE--T----TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--C----CCCEEEEEECCHHHHHHHHHHhc
Confidence 56899999999999999999999999999997543 2 27999999999999999999764
No 90
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.5e-13 Score=105.87 Aligned_cols=65 Identities=23% Similarity=0.239 Sum_probs=56.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC-eEEeEEE-EeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVV-IRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~-I~~~~i~-~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|.+||. |..+.+. .+..++.++|||||+|.+.++|.+||+.|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 4689999999999999999999999998 9997664 333455779999999999999999999874
No 91
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=3.2e-13 Score=108.17 Aligned_cols=63 Identities=14% Similarity=0.258 Sum_probs=55.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCe-EEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGEL-SSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I-~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
..++|||+|||+++++++|+++|++||.| ..+.|..+. ++.++|||||+|.+.++|++||+..
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~ 77 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLH 77 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGC
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhC
Confidence 56899999999999999999999999999 777665444 7778999999999999999999763
No 92
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.38 E-value=2.7e-13 Score=106.00 Aligned_cols=63 Identities=22% Similarity=0.340 Sum_probs=54.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeC-CCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRS-RKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~-~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++|| |..+.|..+. .+|+++|||||+|.+.++|.+|| .|.
T Consensus 18 ~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~ 81 (100)
T 2j76_E 18 PPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLN 81 (100)
T ss_dssp --CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcC
Confidence 569999999999999999999999999 9998765444 36778999999999999999999 664
No 93
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=5.8e-13 Score=105.44 Aligned_cols=59 Identities=17% Similarity=0.254 Sum_probs=53.1
Q ss_pred cceeeEeccCCC-CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~-~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+ ++++++|+++|++||.|..+.|. . .+|||||+|++.++|.+||+.|.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~--~----~kg~aFVef~~~~~A~~Ai~~l~ 73 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLIL--N----KINEAFIEMATTEDAQAAVDYYT 73 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEEC--S----SSSCEEEEESSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEE--c----CCCEEEEEECCHHHHHHHHHHHc
Confidence 568999999999 99999999999999999998653 2 35899999999999999999875
No 94
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=2.1e-12 Score=102.12 Aligned_cols=62 Identities=32% Similarity=0.503 Sum_probs=55.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|. . .+.++|||||+|.+.++|++||+.|.
T Consensus 21 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~-~~~~~g~afV~f~~~~~A~~A~~~l~ 82 (109)
T 1x4a_A 21 NDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK--N-RRGGPPFAFVEFEDPRDAEDAVYGRD 82 (109)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEC--C-SSSSSCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--E-CCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999997662 2 34468999999999999999998885
No 95
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.38 E-value=1.3e-12 Score=103.01 Aligned_cols=59 Identities=34% Similarity=0.442 Sum_probs=53.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++.|||||||.++++++|+++|++||.|..+.+. . +||||||+|++.++|.+|++.+.
T Consensus 20 ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~--~----~kg~AFVef~~~~~A~~Av~~ln 78 (100)
T 3r27_A 20 ASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVM--P----KKRQALVEFEDVLGACNAVNYAA 78 (100)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEE--T----TTTEEEEEESSHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEE--c----CCCEEEEEECCHHHHHHHHHHhc
Confidence 45889999999999999999999999999997553 1 47999999999999999999875
No 96
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=8.4e-13 Score=102.42 Aligned_cols=63 Identities=24% Similarity=0.264 Sum_probs=55.1
Q ss_pred cceeeEeccCCCCCCHHHHH----HHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~----~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.+++|||+|||.++++++|+ ++|++||.|..+.|..+ +.. +|||||+|.+.++|++||+.|..
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~--~~~-rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPH--TDY-QLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSC--CST-TCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeC--CCC-CeEEEEEECCHHHHHHHHHHhCC
Confidence 56899999999999999999 99999999999766433 223 89999999999999999998863
No 97
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.37 E-value=1.2e-12 Score=106.14 Aligned_cols=64 Identities=27% Similarity=0.283 Sum_probs=58.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+. ++.++|||||+|.+.++|.+||+.|.
T Consensus 34 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~ 97 (124)
T 2kt5_A 34 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYK 97 (124)
T ss_dssp SCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999998776555 77789999999999999999999875
No 98
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.37 E-value=2e-13 Score=104.16 Aligned_cols=62 Identities=23% Similarity=0.402 Sum_probs=56.6
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.+ |.+|+..|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 68999999999999999999999999999877655566788999999999999 999999875
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.37 E-value=4.5e-13 Score=105.74 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=56.6
Q ss_pred cceeeEeccCCCCC------CHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSV------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~------te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++ ++++|+++|++||.|..+.|. ..+|.++|||||+|.+.++|.+||+.|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~ 82 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNAD 82 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCS
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhC
Confidence 45899999999999 789999999999999997654 4677889999999999999999999875
No 100
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.37 E-value=1.1e-12 Score=115.82 Aligned_cols=65 Identities=26% Similarity=0.419 Sum_probs=60.0
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.++|||||||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.+..
T Consensus 15 ~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~ 79 (213)
T 4f02_A 15 MASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNF 79 (213)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhh
Confidence 47899999999999999999999999999998877677788899999999999999999998864
No 101
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=100.12 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=56.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++| .|..+.|..+ .+|.++|||||+|.+.++|++||+ +.
T Consensus 9 ~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~ 70 (91)
T 2dgw_A 9 TCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CN 70 (91)
T ss_dssp CCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SC
T ss_pred CccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hC
Confidence 56899999999999999999999999 8999887655 677789999999999999999999 65
No 102
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.37 E-value=4.4e-13 Score=104.75 Aligned_cols=61 Identities=25% Similarity=0.434 Sum_probs=56.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|++||+
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh
Confidence 56899999999999999999999999999999886665 77789999999999999999998
No 103
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=6.1e-13 Score=104.82 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=54.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 312 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~a 312 (318)
..++|||+|||+++++++|+++|++||.+ .+.|.++. +++++|||||+|.+.++|++||+.
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~ 74 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAMAK 74 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHHHh
Confidence 56899999999999999999999999955 77776554 777899999999999999999953
No 104
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.36 E-value=9e-13 Score=106.41 Aligned_cols=63 Identities=22% Similarity=0.155 Sum_probs=56.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC---eEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~---I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+++++++|+++|++||. |..+.|..+.. ++++|||||+|.+.++|++||+ +.
T Consensus 16 ~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 81 (118)
T 2db1_A 16 EGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KD 81 (118)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 5689999999999999999999999999 88887766554 7789999999999999999998 53
No 105
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.36 E-value=1.3e-12 Score=112.48 Aligned_cols=66 Identities=14% Similarity=0.329 Sum_probs=60.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+....
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~ 77 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPH 77 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCC
Confidence 678999999999999999999999999999998876666788899999999999999999987543
No 106
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.36 E-value=7.6e-13 Score=119.12 Aligned_cols=65 Identities=11% Similarity=0.203 Sum_probs=59.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCC--CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFG--ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG--~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+||++++++++|+++|++|| .|..+.|.++..+++++|||||+|.+.++|++||+.|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~ln 133 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLP 133 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTST
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 568999999999999999999999999 99999887777788889999999999999999999876
No 107
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=9.6e-13 Score=105.30 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=53.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
+.++|||+|||+++++++|+++|+.| .|..+.|.++. .|+++|||||+|.+.++|++||+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~ 74 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH-VGRNNGNGLVKFLSPQDTFEALK 74 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT-TCCCCSEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC-CCCCCeEEEEEECCHHHHHHHHh
Confidence 46899999999999999999999999 88888775554 47789999999999999999995
No 108
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.36 E-value=1.3e-12 Score=109.90 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=59.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g 134 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDG 134 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999999999999999987765556788899999999999999999998753
No 109
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=7.4e-13 Score=107.49 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=57.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+++++++|+++|++||.|..+.+.++..++.++|||||+|.+.++|.+||+ +.
T Consensus 24 ~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~ 87 (124)
T 1wel_A 24 AGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RH 87 (124)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hC
Confidence 56899999999999999999999999999886566677788889999999999999999998 54
No 110
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.35 E-value=2.2e-12 Score=108.60 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=60.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|.+||+.|.
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~ 102 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYIN 102 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999999887776677789999999999999999999875
No 111
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.35 E-value=2.1e-12 Score=110.02 Aligned_cols=66 Identities=26% Similarity=0.328 Sum_probs=60.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+.+|++||.|..+.|.....++.++|||||+|.+.+.|.+||+.|+.
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g 136 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999999999999999998876667788899999999999999999998863
No 112
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7e-13 Score=108.41 Aligned_cols=65 Identities=20% Similarity=0.101 Sum_probs=56.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCe----EEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGEL----SSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I----~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||+++|+++|+++|++||.| ..+.|..+ .+|+++|||||+|.+.++|++||+....
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~ 90 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKD 90 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCC
Confidence 56899999999999999999999999986 56666554 5777899999999999999999986443
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-12 Score=105.88 Aligned_cols=59 Identities=22% Similarity=0.331 Sum_probs=53.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||||||+++++++|+++|++||.|..+.|. . .||||||+|++.++|.+||+.+.
T Consensus 30 ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~--~----~kG~AFVeF~~~e~A~~Ai~~l~ 88 (119)
T 2ad9_A 30 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLML--K----GKNQAFIEMNTEEAANTMVNYYT 88 (119)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEE--G----GGTEEEEECSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe--C----CCCEEEEEECCHHHHHHHHHHhc
Confidence 46899999999999999999999999999998664 2 27999999999999999999875
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.35 E-value=4.9e-13 Score=105.91 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=56.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC---eEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~---I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+++++++|+++|+.||. |..+.|..+.. |.++|||||+|.+.++|++||+ +.
T Consensus 10 ~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~ 75 (107)
T 2lmi_A 10 DVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KH 75 (107)
T ss_dssp SCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hC
Confidence 5789999999999999999999999998 88877655544 7889999999999999999998 53
No 115
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.35 E-value=9e-13 Score=108.26 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=55.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeE--EeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhcc
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELS--SEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 317 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~--~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~~ 317 (318)
..++|||+|||+++++++|+++|++| .|. .+.|..+.. |+++|||||+|.+.++|++||+.....|
T Consensus 41 ~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l 108 (126)
T 2hgm_A 41 NDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERI 108 (126)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEE
Confidence 45889999999999999999999999 566 666654444 7889999999999999999998765443
No 116
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=3e-12 Score=96.44 Aligned_cols=58 Identities=28% Similarity=0.489 Sum_probs=52.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
..++|||+|||.++++++|+++|++||.|..+.+. . ++|||||+|.+.++|.+|++.|
T Consensus 11 ~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~--~----~kg~afV~f~~~~~A~~a~~~l 68 (85)
T 2ytc_A 11 TITTLYVGGLGDTITETDLRNHFYQFGEIRTITVV--Q----RQQCAFIQFATRQAAEVAAEKS 68 (85)
T ss_dssp SCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEE--G----GGTEEEEEESSHHHHHHHHHTT
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEE--C----CCCEEEEEECCHHHHHHHHHHh
Confidence 56899999999999999999999999999997664 2 3799999999999999999987
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=1.5e-12 Score=101.47 Aligned_cols=62 Identities=27% Similarity=0.444 Sum_probs=54.1
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|. +. +..++..+|||||+|.+.++|++||+.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~---~~-~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 74 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK---VP-QNQNGKSKGYAFIEFASFEDAKEALNSCN 74 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE---CC-BCSSSCBCSEEEEECSSHHHHHHHHHHTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE---EE-ECCCCCEeeEEEEEECCHHHHHHHHHHhC
Confidence 3579999999999999999999999999883 32 33567789999999999999999999875
No 118
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=3e-12 Score=107.92 Aligned_cols=66 Identities=18% Similarity=0.284 Sum_probs=59.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCC--CCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKD--VGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~--~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
+.++|||+|||.++++++|+++|++||.|..+.+......+ .++|||||+|.+.++|++||+.+..
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~ 69 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHN 69 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 46899999999999999999999999999999887666655 6799999999999999999998853
No 119
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.4e-12 Score=96.83 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=53.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|++||+.|..
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g 64 (90)
T 2dnq_A 7 GMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHH 64 (90)
T ss_dssp CCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcC
Confidence 46899999999999999999999999999997664 58999999999999999998864
No 120
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.34 E-value=1.1e-12 Score=110.14 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=58.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
+.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+||+.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~ 65 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ 65 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc
Confidence 4689999999999999999999999999999877655567888999999999999999999864
No 121
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=104.59 Aligned_cols=66 Identities=23% Similarity=0.312 Sum_probs=55.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+.++..++.++|||||+|.+.++|.+||+.|..
T Consensus 24 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g 89 (115)
T 2cpx_A 24 PNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNG 89 (115)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 458999999999999999999999999995443333333677899999999999999999998753
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.33 E-value=4.8e-13 Score=104.36 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=55.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|.. .+.++..++.++|||||+|.+.++|++||+ |.
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~ 78 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 78 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cC
Confidence 4589999999999999999999999999877 344444567789999999999999999998 65
No 123
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.2e-12 Score=102.80 Aligned_cols=66 Identities=18% Similarity=0.235 Sum_probs=56.6
Q ss_pred cceeeEeccCCCCCCHHHHH---HHhhcCCCeEEeEEEEeCCCC---CCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIA---EEFKKFGELSSEGVVIRSRKD---VGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~---~~F~~fG~I~~~~i~~~~~~~---~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+ ++|++||.|..+.|..+...+ .++|||||+|.+.++|++||+.|..
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng 85 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNN 85 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCC
Confidence 56899999999999999999 999999999998775443322 4569999999999999999998753
No 124
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=2.8e-12 Score=102.43 Aligned_cols=60 Identities=28% Similarity=0.361 Sum_probs=53.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+. ..+|||||+|.+.++|++||+.|..
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~A~~Ai~~l~g 68 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLP------EGGITAIVEFLEPLEARKAFRHLAY 68 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECC------SSSSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 56899999999999999999999999999986542 2578999999999999999998863
No 125
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=3e-12 Score=103.06 Aligned_cols=59 Identities=22% Similarity=0.324 Sum_probs=53.2
Q ss_pred cceeeEeccCCCC-CCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~-~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||++ +++++|+++|++||.|..+.|. ++||||||+|++.++|.+||+.|.
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~------~~kg~aFVef~~~~~A~~Ai~~l~ 83 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILM------RMKSQAFIEMETREDAMAMVDHCL 83 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhc
Confidence 4689999999998 9999999999999999998663 247999999999999999999874
No 126
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=3.4e-12 Score=99.50 Aligned_cols=59 Identities=14% Similarity=0.295 Sum_probs=53.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. .++|||||+|.+.++|.+||+.|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~ 84 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALA 84 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhC
Confidence 45899999999999999999999999999997664 357999999999999999999875
No 127
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.32 E-value=1.3e-12 Score=108.62 Aligned_cols=63 Identities=21% Similarity=0.118 Sum_probs=57.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC---eEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE---LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~---I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+++|+++|+++|++||. |..+.|..+.. |+++|||||+|.+.++|++||+ +.
T Consensus 43 ~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~ 108 (136)
T 2hgl_A 43 EGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KD 108 (136)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cC
Confidence 5689999999999999999999999999 78887766655 8889999999999999999998 54
No 128
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=6.1e-12 Score=97.48 Aligned_cols=61 Identities=21% Similarity=0.300 Sum_probs=53.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|. +.+.. +.++|||||+|.+.++|++||+.|..
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g 78 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQG 78 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999999999999997 55543 24689999999999999999998753
No 129
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.32 E-value=2.1e-12 Score=99.15 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=48.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNA 309 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~A 309 (318)
..++|||||||+++++++|+++|++||.|..+.|.. .+||||||+|.+.++|+++
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~-----~srGfaFV~F~~~~~A~~~ 64 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPK-----PFRAFAFVTFADDKVAQSL 64 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCS-----SCCSEEEEEESCHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEee-----CCCCEEEEEECCHHHHHHH
Confidence 568999999999999999999999999999976642 2689999999999999854
No 130
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.32 E-value=5.3e-12 Score=100.67 Aligned_cols=62 Identities=27% Similarity=0.400 Sum_probs=55.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.. .+.++|||||+|.+.++|.+||+.|.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~ 68 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGN---TPETRGTAYVVYEDIFDAKNAVDHLS 68 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEC---STTTTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee---CCCCCcEEEEEECCHHHHHHHHHHcC
Confidence 458999999999999999999999999999976642 34458999999999999999999875
No 131
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.32 E-value=1.2e-12 Score=108.40 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=58.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~ 110 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMD 110 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999998775555577889999999999999999998875
No 132
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=4.1e-12 Score=98.72 Aligned_cols=59 Identities=24% Similarity=0.371 Sum_probs=53.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. . .+|||||+|.+.++|.+||+.|.
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~----~kg~afV~f~~~~~a~~a~~~l~ 72 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIH--K----DKGFGFIRLETRTLAEIAKVELD 72 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEE--T----TTTEEEEECSSSHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEe--c----CCCEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999999997653 2 37999999999999999999875
No 133
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=5.3e-12 Score=99.97 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=52.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.|.. + |||||+|.+.++|++||+.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~--~-----g~afV~f~~~~~a~~Ai~~l~ 71 (108)
T 1x4c_A 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYR--D-----GTGVVEFVRKEDMTYAVRKLD 71 (108)
T ss_dssp CCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEET--T-----TEEEEEESSHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEec--C-----CEEEEEECCHHHHHHHHHHHC
Confidence 468999999999999999999999999999976642 2 899999999999999999885
No 134
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.31 E-value=4e-12 Score=101.04 Aligned_cols=58 Identities=33% Similarity=0.515 Sum_probs=53.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|.+|++.|..
T Consensus 30 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g 87 (108)
T 2jvo_A 30 SNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHG 87 (108)
T ss_dssp SCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCC
Confidence 56899999999999999999999999999998664 69999999999999999998753
No 135
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=6.1e-12 Score=96.44 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=52.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|.+||+.|.
T Consensus 9 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 65 (92)
T 2dgt_A 9 ASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV--------KDYAFVHMERAEDAVEAIRGLD 65 (92)
T ss_dssp SSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC--------SSEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE--------CCEEEEEECCHHHHHHHHHHhC
Confidence 56999999999999999999999999999997653 4699999999999999999875
No 136
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.30 E-value=6.8e-12 Score=97.66 Aligned_cols=58 Identities=22% Similarity=0.488 Sum_probs=52.7
Q ss_pred cceeeEeccCCC-CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~-~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||. ++++++|+++|++||.|..+.+ .+|||||+|.+.++|.+||+.+..
T Consensus 21 ~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~Ai~~l~g 79 (97)
T 2xnq_A 21 MKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI--------KNAFGFIQFDNPQSVRDAIEXESQ 79 (97)
T ss_dssp TTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE--------eCCEEEEEECCHHHHHHHHHHcCC
Confidence 458999999998 9999999999999999999765 279999999999999999998753
No 137
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.30 E-value=7.1e-12 Score=104.62 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=58.7
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.+.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 65 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLN 65 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcC
Confidence 4789999999999999999999999999998887666678889999999999999999999775
No 138
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=6e-12 Score=103.36 Aligned_cols=62 Identities=18% Similarity=0.194 Sum_probs=53.8
Q ss_pred ceeeEeccCCCCCCHHHHH----HHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~----~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.++||||||++++++++|+ ++|++||.|..+.+ . .++.++|||||+|.+.++|.+||+.|..
T Consensus 29 ~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i--~-~~~~~rG~aFV~F~~~~~A~~Ai~~lng 94 (127)
T 2a3j_A 29 SQVVLITNINPEVPKEKLQALLYALASSQGDILDIVV--D-LSDDNSGKAYIVFATQESAQAFVEAFQG 94 (127)
T ss_dssp CSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEE--C-CCCSSCCCEEEEESSHHHHHHHHHHSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEe--c-cCCCcCCEEEEEECCHHHHHHHHHHHCC
Confidence 5789999999999999876 69999999988644 2 3567799999999999999999998863
No 139
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.29 E-value=6.9e-12 Score=97.11 Aligned_cols=57 Identities=23% Similarity=0.510 Sum_probs=52.7
Q ss_pred cceeeEeccCCC-CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~-~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||. ++++++|+++|++||.|..+.+. +|||||+|.+.++|.+||+.|.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~ 66 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECES 66 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcC
Confidence 568999999998 99999999999999999997662 6999999999999999999875
No 140
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.29 E-value=2.8e-12 Score=102.93 Aligned_cols=61 Identities=16% Similarity=0.070 Sum_probs=53.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCC-CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG-~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||+++++++|+++|++|| .|..+.|. .+.++|||||+|.+.++|++||+.|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~----~~~~rGfaFV~F~~~e~A~~Ai~~ln 88 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVN----TRDFDGTGALEFPSEEILVEALERLN 88 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECS----SCSSSCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEE----cCCCCCEEEEEECCHHHHHHHHHHcC
Confidence 458999999999999999999999999 89986552 12468999999999999999999875
No 141
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=8.3e-12 Score=96.64 Aligned_cols=59 Identities=24% Similarity=0.490 Sum_probs=52.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. . ++|||||+|.+.++|++||+.|.
T Consensus 16 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~--~----~~g~afV~f~~~~~A~~A~~~l~ 74 (97)
T 1why_A 16 PTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHV--K----GDSFAYIQYESLDAAQAACAKMR 74 (97)
T ss_dssp CCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEEC--S----SSCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe--C----CCCEEEEEECCHHHHHHHHHHHC
Confidence 45899999999999999999999999999997552 2 27899999999999999999875
No 142
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.28 E-value=4e-12 Score=99.05 Aligned_cols=58 Identities=31% Similarity=0.421 Sum_probs=52.3
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|||+|||.++++++|+++|++||.|..+.+.. + ++|||||+|.+.++|.+||+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~--~---~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIAR--N---PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEES--S---SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEee--C---CCCEEEEEECCHHHHHHHHHHHC
Confidence 5799999999999999999999999999976542 2 68999999999999999999875
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=5.5e-12 Score=99.82 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=53.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. .+ +|||||+|.+.++|.+||+.|.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~--~~----~g~afV~f~~~~~a~~A~~~l~ 82 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVN 82 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEE--TT----TTEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe--CC----CCEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999997653 22 7999999999999999999875
No 144
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=9.8e-12 Score=96.89 Aligned_cols=62 Identities=19% Similarity=0.323 Sum_probs=53.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|+.|+.+ .+..+..++.++|||||+|.+.++|++||+.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 75 (102)
T 2fc8_A 14 PSKTLFVKGLSEDTTEETLKESFDGSVRA---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAME 75 (102)
T ss_dssp CCSSEEEECCCTTCCHHHHHHTSTTCSEE---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCccCHHHHHHHhcCCeEE---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999988643 344555677789999999999999999999875
No 145
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.27 E-value=7e-12 Score=105.11 Aligned_cols=64 Identities=20% Similarity=0.379 Sum_probs=58.6
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++|||+|||.++++++|+++|++||.|..+.+.....++.++|||||+|.+.++|.+|++.+.
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~ 66 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLN 66 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHT
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcC
Confidence 5889999999999999999999999999998776666677789999999999999999999775
No 146
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=1.9e-11 Score=94.95 Aligned_cols=57 Identities=33% Similarity=0.424 Sum_probs=51.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcC--CCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKF--GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~f--G~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++| |.|..+.+ .+|||||+|.+.++|.+||+.|.
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l~ 72 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK--------IRDYAFVHFSNREDAVEAMKALN 72 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE--------CSSEEEEEESSHHHHHHHHHHHS
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--------eCCeEEEEeCCHHHHHHHHHHhC
Confidence 56899999999999999999999999 88988644 26899999999999999999875
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.27 E-value=2.6e-12 Score=99.20 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=54.7
Q ss_pred cceeeEeccCCCCCCHHHHH----HHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~----~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+ ++|++||.|..+.+. .++.++|||||+|.+.++|.+|++.|.
T Consensus 7 ~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~---~~~~~~g~afV~f~~~~~A~~A~~~l~ 72 (97)
T 1nu4_A 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQ 72 (97)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC---HHHHHTTCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE---cCCCcCcEEEEEeCCHHHHHHHHHHhC
Confidence 45899999999999999999 999999999997553 245568999999999999999999875
No 148
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=4.1e-13 Score=107.59 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=58.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEE--------eEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSS--------EGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~--------~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|.. +.|..+..++.++|||||+|.+.++|++||+.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 78 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFD 78 (116)
Confidence 5689999999999999999999999999998 6666555667789999999999999999999775
No 149
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=8.5e-12 Score=95.24 Aligned_cols=58 Identities=22% Similarity=0.327 Sum_probs=52.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+. ++||||+|.+.++|++||+.|..
T Consensus 8 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--------~~~afV~f~~~~~a~~A~~~l~g 65 (90)
T 2dnp_A 8 NTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV--------KDYAFVHMEKEADAKAAIAQLNG 65 (90)
T ss_dssp CSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhCC
Confidence 56899999999999999999999999999997653 46999999999999999998753
No 150
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.26 E-value=8.7e-12 Score=97.66 Aligned_cols=57 Identities=32% Similarity=0.575 Sum_probs=52.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. +|||||+|.+.++|.+||+.|.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~ 66 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMN 66 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHC
Confidence 46899999999999999999999999999997652 5799999999999999999875
No 151
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.26 E-value=8.6e-12 Score=109.33 Aligned_cols=68 Identities=18% Similarity=0.231 Sum_probs=59.3
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhcc
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 317 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~~ 317 (318)
...++|||+|||.++++++|+++|++||.|..+.|..+ .++.++|||||+|.+.++|++||..+...+
T Consensus 107 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~-~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~ 174 (193)
T 2voo_A 107 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRT-LHKAFKGSIFVVFDSIESAKKFVETPGQKY 174 (193)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEEC-TTCCEEEEEEEEESSHHHHHHHHHCTTCEE
T ss_pred cccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEEC-CCCCcccEEEEEECCHHHHHHHHHhCCCeE
Confidence 35689999999999999999999999999999877544 346779999999999999999998776543
No 152
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.26 E-value=4e-12 Score=98.05 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=53.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||+.|.
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~ 74 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 74 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhC
Confidence 56899999999999999999999999998764 3356679999999999999999999875
No 153
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.25 E-value=1.1e-11 Score=98.34 Aligned_cols=57 Identities=28% Similarity=0.402 Sum_probs=52.4
Q ss_pred cceeeEeccCCCC-CCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~-~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.+ +++++|+++|++||.|..+.+ .+|||||+|.+.++|++||+.|.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~ 83 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGEN 83 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHT
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcC
Confidence 4589999999999 999999999999999999765 37999999999999999998875
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.5e-11 Score=94.00 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=51.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|| ++++++|+++|++||.|..+.|. .++|||||+|.+.++|.+||+.|.
T Consensus 14 ~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~ 70 (97)
T 1x5p_A 14 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 70 (97)
T ss_dssp CCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 5689999996 89999999999999999997652 457999999999999999999875
No 155
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.24 E-value=1e-11 Score=108.41 Aligned_cols=66 Identities=26% Similarity=0.299 Sum_probs=58.1
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
...++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 91 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMN 91 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHS
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHcc
Confidence 356899999999999999999999999999998776555567789999999999999999999775
No 156
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.24 E-value=6.6e-12 Score=100.75 Aligned_cols=59 Identities=24% Similarity=0.262 Sum_probs=51.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|. .+ |||||+|.+.++|++||+.|..
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~--~~-----g~afV~f~~~~~a~~Ai~~l~g 73 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVY--RD-----GTGVVEFVRKEDMTYAVRKLDN 73 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEEC--TT-----SEEEEEESSHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEe--cC-----CEEEEEECCHHHHHHHHHHhCC
Confidence 45899999999999999999999999999997653 21 9999999999999999998863
No 157
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.24 E-value=1.6e-11 Score=105.64 Aligned_cols=66 Identities=18% Similarity=0.358 Sum_probs=59.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||..+..
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~ 168 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 168 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCc
Confidence 348899999999999999999999999999988876666778899999999999999999986543
No 158
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.24 E-value=2.3e-12 Score=107.57 Aligned_cols=61 Identities=21% Similarity=0.136 Sum_probs=53.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
..++|||+|||+++++++|+++|++|| |..+.|.++. .++++|||||+|.+.++|++|| .+
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~-~g~srGfaFV~F~~~e~A~~Al-~~ 105 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP-DGRVTGEADVEFATHEEAVAAM-SK 105 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS-SSCSSCCCEEECSHHHHHHHHT-TC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC-CCCCceEEEEEeCCHHHHHHHH-hh
Confidence 568999999999999999999999999 6677665444 4778999999999999999999 44
No 159
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.23 E-value=2.7e-11 Score=100.95 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=60.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.....++.++|||||+|.+.++|.+|++.|.
T Consensus 86 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~ 150 (166)
T 3md3_A 86 DTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQ 150 (166)
T ss_dssp TCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred CCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 45889999999999999999999999999999887766778889999999999999999999875
No 160
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.23 E-value=3.2e-12 Score=106.08 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=55.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEe------EEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSE------GVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~------~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+.+|++||.|..+ .+.+. .++.++|||||+|.+.++|.+||+.|+.
T Consensus 44 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng 114 (143)
T 3egn_A 44 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANG 114 (143)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCC
Confidence 35889999999999999999999999998764 22222 3567899999999999999999998863
No 161
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.23 E-value=1.4e-11 Score=106.57 Aligned_cols=65 Identities=26% Similarity=0.257 Sum_probs=58.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.|.... ++.++|||||+|.+.++|.+||+.|..
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng 151 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKG 151 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCC
Confidence 56899999999999999999999999999998775444 677899999999999999999998753
No 162
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.23 E-value=1.5e-11 Score=102.77 Aligned_cols=60 Identities=33% Similarity=0.363 Sum_probs=53.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+. .+ ++|||||+|.+.++|.+||+.|.
T Consensus 72 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~--~~---~~g~afV~f~~~~~a~~A~~~l~ 131 (150)
T 2i2y_A 72 LDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVA--RN---PPGFAFVEFEDPRDAADAVRELD 131 (150)
T ss_dssp TSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEEC--SS---SCSEEEEEESSHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEe--eC---CCcEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999997663 22 58999999999999999999875
No 163
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.8e-11 Score=102.07 Aligned_cols=62 Identities=23% Similarity=0.430 Sum_probs=54.8
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|||+|||.++++++|+++|++||.|..+.+... ..+.++|||||+|.+.++|.+|++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECC-CC-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEEC-CCCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 57999999999999999999999999999877543 346689999999999999999998775
No 164
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.1e-11 Score=100.00 Aligned_cols=59 Identities=17% Similarity=0.179 Sum_probs=52.0
Q ss_pred ceeeEe--ccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYV--RNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfV--gnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.++||| |||+.++++++|+++|++||.|..+.+ .. +||||||+|.+.++|++|++.|..
T Consensus 25 t~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i--~~----~rgfaFV~f~~~~~A~~Ai~~lnG 85 (114)
T 2cq2_A 25 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLM--PP----NKPYSFARYRTTEESKRAYVTLNG 85 (114)
T ss_dssp CSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEEC--CT----TCSCEEEEESSHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEE--eC----CCCEEEEEECCHHHHHHHHHHhCC
Confidence 478999 779999999999999999999998643 22 479999999999999999999864
No 165
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.21 E-value=4.9e-11 Score=99.50 Aligned_cols=66 Identities=17% Similarity=0.375 Sum_probs=59.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|..
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 152 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 152 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcC
Confidence 457899999999999999999999999999988876666777899999999999999999998863
No 166
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-11 Score=94.69 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=51.7
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCC-eEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGE-LSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~-I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||. |..+.+ . ++|||||+|.+.++|++||+.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~--~-----~~g~afV~f~~~~~A~~A~~~l~g 66 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL--L-----KSGYAFVDYPDQNWAIRAIETLSG 66 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE--E-----ETTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE--c-----CCCEEEEEECCHHHHHHHHHHccC
Confidence 4589999999999999999999999999 666543 1 379999999999999999998864
No 167
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.21 E-value=3.3e-11 Score=101.42 Aligned_cols=65 Identities=17% Similarity=0.308 Sum_probs=58.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+ ..|.++|||||+|.+.++|.+||+.|..
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRG-PDGLSRGCAFVTFTTRAMAQTAIKAMHQ 158 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEC-TTSCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEEC-CCCCEEEEEEEEECCHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999877544 4577799999999999999999999863
No 168
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=3.8e-11 Score=92.42 Aligned_cols=59 Identities=27% Similarity=0.512 Sum_probs=51.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+ .++..++ + ||||+|.+.++|.+||+ |.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g--~-~afV~f~~~~~a~~ai~-l~ 65 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKG--V-FAIVEMGDVGAREAVLS-QS 65 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSC--C-EEEEEESSHHHHHHHHT-CS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCC--c-EEEEEECCHHHHHHHHh-cC
Confidence 45799999999999999999999999999985 3444343 3 99999999999999998 64
No 169
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.4e-12 Score=95.95 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=49.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
..++|||+|||.++++++|+++|++||.|..+.|. .+ ++|||||+|.+.++|++|+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~--~~---~~g~afV~f~~~~~a~~~~~ 60 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIP--KP---FRAFAFVTFADDQIAQSLCG 60 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECC--SS---CCSCCEEECSCHHHHHHTTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEe--cC---CCCEEEEEECCHHHHHHHhc
Confidence 45899999999999999999999999999997653 21 68999999999999987643
No 170
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=99.21 E-value=1.7e-11 Score=111.90 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=57.8
Q ss_pred CCCCccceEEE--EeeecccCCCcEEEEEEEEEEecC---CccccceeEEEEeeee-CCeEEEEcceEeeecc
Q 021044 1 MSLNYSGIEIK--TAHSLESWNGGVLVMVSGSVQVKD---FSARRKFVQTFFLAPQ-EKGYFVLNDIFHFIGE 67 (318)
Q Consensus 1 ~sl~~~~~~i~--~~D~q~s~~~gvlv~v~G~l~~~~---~~~~~~F~Q~F~L~~~-~~~y~v~nDifr~~~~ 67 (318)
.+||.++|.|. ++|+|+..+++|+|+|+|.++.++ ....|.|+|+|+|.|. +++|+|+||+||+..-
T Consensus 98 ~~LP~t~H~~~s~~vD~~~~~~~~i~i~V~G~f~e~~~~~~~~~r~F~rtFvL~p~~~~~~~I~ND~l~l~~~ 170 (250)
T 1jkg_B 98 NELPKTQHDVNSFVVDISAQTSTLLCFSVNGVFKEVDGKSRDSLRAFTRTFIAVPASNSGLCIVNDELFVRNA 170 (250)
T ss_dssp TTSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEECSSTTTTCEEEEEEEEEEEECTTSSEEEEEEEEEEEEC
T ss_pred HhCCCeeEeccceEEeeeecCCCEEEEEEEEEEEECCCCCCCCceeeEEEEEEEECCCCcEEEEeeEEEEECC
Confidence 36898888766 899999888899999999999866 2247999999999996 5789999999999864
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.21 E-value=2.4e-11 Score=102.30 Aligned_cols=65 Identities=22% Similarity=0.366 Sum_probs=59.5
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.|..
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g 158 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 158 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTT
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 58899999999999999999999999999988876666788899999999999999999998753
No 172
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.20 E-value=4.3e-11 Score=104.47 Aligned_cols=65 Identities=22% Similarity=0.426 Sum_probs=60.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+.+.....++.++|||||+|.+.++|.+||+.|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~ 188 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMN 188 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHcc
Confidence 56899999999999999999999999999999887666678889999999999999999999875
No 173
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.20 E-value=3.9e-11 Score=102.67 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=54.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
...+|||+||++.+++++|+++|++||.|..+.|.. . ..+|||||+|.+.++|.+|++.|..
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k---~~rgfAFVeF~d~~~A~~Ai~~LnG 106 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-K---NNQFQALLQYADPVSAQHAKLSLDG 106 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-S---SSCEEEEEEESCHHHHHHHHHHSTT
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-C---CCCCEEEEEECCHHHHHHHHHHhCC
Confidence 457899999999999999999999999999986632 2 2479999999999999999999863
No 174
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.19 E-value=2.4e-11 Score=119.21 Aligned_cols=65 Identities=23% Similarity=0.399 Sum_probs=60.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++|+++|+.+|++||.|..|.|.....++.++|||||+|.+.++|.+||+.|+
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~ln 165 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHAD 165 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcC
Confidence 45899999999999999999999999999999887666678889999999999999999999886
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.19 E-value=5.6e-11 Score=99.54 Aligned_cols=66 Identities=18% Similarity=0.356 Sum_probs=59.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+.....++.++|||||+|.+.++|.+|++.|..
T Consensus 88 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g 153 (168)
T 1b7f_A 88 KDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNN 153 (168)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 357899999999999999999999999999988766665777899999999999999999998864
No 176
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.19 E-value=6e-11 Score=97.81 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=53.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccE-EEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgf-gFV~F~~~~~a~~Al~al~~ 315 (318)
...+|||+||++.+|+++|+++|++||.|..+.+..+ .+|| |||+|.+.++|.+|++.|..
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG 88 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDG 88 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCC
Confidence 4578999999999999999999999999999866432 2577 99999999999999999864
No 177
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.19 E-value=2.2e-11 Score=92.69 Aligned_cols=59 Identities=22% Similarity=0.277 Sum_probs=52.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++| .|..+.+ . .++|||||+|.+.++|++||+.|..
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i--~----~~~g~afV~f~~~~~a~~Ai~~l~g 62 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYV--D----RNKRTAFVTLLNGEQAQNAIQMFHQ 62 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEE--E----GGGTEEEECCSCHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEE--e----CCCcEEEEEECCHHHHHHHHHHhCC
Confidence 45889999999999999999999999 9998765 2 4689999999999999999998863
No 178
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.8e-11 Score=100.53 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=53.5
Q ss_pred eeeEeccC----CCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcC----HHH----HHHHHH
Q 021044 252 KSVYVRNL----PPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED----MTG----VRNAVE 311 (318)
Q Consensus 252 ~~IfVgnL----p~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~----~~~----a~~Al~ 311 (318)
++|||+|| ++.+++.+|+++|+.||.|.++.+.++..+|.++|||||+|.+ .+. |.+|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~ 74 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVR 74 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHH
Confidence 68999999 9999999999999999999999999999999999999999996 322 677776
No 179
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.18 E-value=1.9e-11 Score=102.50 Aligned_cols=62 Identities=16% Similarity=0.409 Sum_probs=56.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+|++
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~ 147 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ 147 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh
Confidence 45789999999999999999999999999998776555567889999999999999999998
No 180
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.18 E-value=5.2e-11 Score=89.80 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=51.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcC----C-------CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~f----G-------~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++| | .|..+.+. ..+|||||+|.+.++|.+|| .+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~------~~kg~afV~f~~~~~a~~A~-~l~ 73 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFD 73 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEC------SSSSEEEEEESSHHHHHHHG-GGT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEec------CCCcEEEEEcCCHHHHHHHH-hcC
Confidence 56899999999999999999999999 8 89886552 23799999999999999999 775
No 181
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.6e-11 Score=91.98 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=52.1
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeE-EEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEG-VVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~-i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..++ +.. +.. .|.|||+|.+.++|++||+.|..
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~--~~~--~~~afV~f~~~~~a~~Ai~~l~g 76 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNT--DSE--TAVVNVTYSSKDQARQALDKLNG 76 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECC--SSS--SEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeec--CCC--CCEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999999999999999999999974 432 222 24499999999999999998753
No 182
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.16 E-value=6.3e-11 Score=104.55 Aligned_cols=63 Identities=25% Similarity=0.467 Sum_probs=56.4
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+||+.++++++|+++|++||.|..+.|..+ ++.++|||||+|.+.++|.+||+.|.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d--~~~~~g~~fV~f~~~~~a~~Ai~~ln 164 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD--ENGSKGYGFVHFETQEAAERAIEKMN 164 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE--TTEEEEEEEEEESSHHHHHHHHHHHT
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc--CCCCceEEEEEeCCHHHHHHHHHHhC
Confidence 3468999999999999999999999999999877654 34469999999999999999999886
No 183
>1of5_A MRNA export factor MEX67; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=99.16 E-value=2.4e-11 Score=108.62 Aligned_cols=66 Identities=11% Similarity=0.268 Sum_probs=56.1
Q ss_pred CCCccceEE------EEeeecccCC-CcEEEEEEEEEEecCCc-------------------------------ccccee
Q 021044 2 SLNYSGIEI------KTAHSLESWN-GGVLVMVSGSVQVKDFS-------------------------------ARRKFV 43 (318)
Q Consensus 2 sl~~~~~~i------~~~D~q~s~~-~gvlv~v~G~l~~~~~~-------------------------------~~~~F~ 43 (318)
+||.++|.| .++|||+... +||||+|+|.++..+.+ ..|.|+
T Consensus 100 ~LPkT~H~l~~~~~s~~vD~~~~~~~~~i~itV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~ 179 (221)
T 1of5_A 100 TLPKTKHHLQEQPNEYSMETISYPQINGFVITLHGFFEETGKPELESNKKTGKNNYQKNRRYNHGYNSTSNNKLSKKSFD 179 (221)
T ss_dssp HSCCEEECTTTSGGGCEEEEEEEGGGTEEEEEEEEEEEEC-----------------------------CCSCCEEEEEE
T ss_pred hCCCeeEecccCCCceEEEeEEcCCCCeEEEEEEEEEEECCCcccccccccccccccccccccccccccccccCCccceE
Confidence 589888888 6999999764 69999999999976653 468999
Q ss_pred EEEEeeeeCCeEEEEcceEeeecc
Q 021044 44 QTFFLAPQEKGYFVLNDIFHFIGE 67 (318)
Q Consensus 44 Q~F~L~~~~~~y~v~nDifr~~~~ 67 (318)
|||+|.|.+++|+|+||+||+...
T Consensus 180 RTFvL~P~~~~~~I~nD~l~ir~~ 203 (221)
T 1of5_A 180 RTWVIVPMNNSVIIASDLLTVRAY 203 (221)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEEC
T ss_pred EEEEEEecCCeEEEEeeEEEeecC
Confidence 999999998899999999998754
No 184
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.16 E-value=5.5e-11 Score=102.39 Aligned_cols=66 Identities=21% Similarity=0.362 Sum_probs=59.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|.+||+.|..
T Consensus 113 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 178 (198)
T 2yh0_A 113 SAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNG 178 (198)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCC
Confidence 468999999999999999999999999999988766656777899999999999999999998753
No 185
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.14 E-value=1.2e-10 Score=95.27 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=52.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccE-EEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICY-AFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgf-gFV~F~~~~~a~~Al~al~~ 315 (318)
....|||+||++.+++++|+++|++||.|..+.|. +. .|| |||+|.+.++|.+|+++|..
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~-~~-----~Gf~aFVef~~~~~A~~A~~~LnG 84 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIF-KR-----NGIQAMVEFESVLCAQKAKAALNG 84 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEE-ES-----SSEEEEEEESSHHHHHHHHHHHTT
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEE-eC-----CCCEEEEEECCHHHHHHHHHHhCC
Confidence 44678999999999999999999999999998763 32 276 99999999999999999863
No 186
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.11 E-value=1.5e-10 Score=102.20 Aligned_cols=61 Identities=16% Similarity=0.146 Sum_probs=53.9
Q ss_pred cceeeEeccCC-CCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLP-PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp-~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.+++|||+||+ .++++++|+++|++||.|..+.|. .+ .+|||||+|.+.++|++||+.|..
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~--~~---~~g~afV~f~~~~~A~~Ai~~lng 64 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFM--KS---KPGAAMVEMADGYAVDRAITHLNN 64 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEEC--TT---STTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEe--cC---CCCEEEEEECCHHHHHHHHHHhCC
Confidence 46899999999 899999999999999999997663 22 379999999999999999998863
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.07 E-value=2.3e-10 Score=104.55 Aligned_cols=63 Identities=24% Similarity=0.331 Sum_probs=55.5
Q ss_pred cceeeEeccCCCCCCHHHHH----HHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIA----EEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~----~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+ ++|++||.|..+.+. .+++++|||||+|.+.++|.+||+.|..
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g 74 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVS---RSLKMRGQAFVIFKEVSSATNALRSMQG 74 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEc---CCCCcceEEEEEECCHHHHHHHHHHhcC
Confidence 46899999999999999977 899999999997553 2566899999999999999999988753
No 188
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.07 E-value=2.1e-10 Score=93.03 Aligned_cols=57 Identities=21% Similarity=0.284 Sum_probs=50.9
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|| ++++++|+++|++||.|..+.+. .++|||||+|.+.++|.+||+.|.
T Consensus 38 ~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~ln 94 (121)
T 2bz2_A 38 KGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELN 94 (121)
T ss_dssp CCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhC
Confidence 4689999996 79999999999999999997652 357999999999999999998875
No 189
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.07 E-value=1.4e-10 Score=102.44 Aligned_cols=64 Identities=17% Similarity=0.134 Sum_probs=54.8
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCe--EEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGEL--SSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I--~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.| ..+.+ ..+++..+|||||+|.+.++|.+||..|+.
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~--~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng 187 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV--FSGKSERSSSGLLEWDSKSDALETLGFLNH 187 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE--CSCCSSSSEEEEEECSSHHHHHHHHHHHTT
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE--EcCCCCCceEEEEEeCCHHHHHHHHHHhCC
Confidence 35789999999999999999999999999 66544 444455579999999999999999999864
No 190
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.06 E-value=3.3e-10 Score=103.08 Aligned_cols=62 Identities=31% Similarity=0.501 Sum_probs=57.6
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
+++|||+|||.++++++|+++|++||.|..+.|..+ .+|.++|||||+|.+.++|.+||+.|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 468999999999999999999999999999988666 57778999999999999999999998
No 191
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=99.05 E-value=1.2e-10 Score=104.02 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=53.8
Q ss_pred CCCccceEE------EEeeecccC-CCcEEEEEEEEEEecCC------------------------------ccccceeE
Q 021044 2 SLNYSGIEI------KTAHSLESW-NGGVLVMVSGSVQVKDF------------------------------SARRKFVQ 44 (318)
Q Consensus 2 sl~~~~~~i------~~~D~q~s~-~~gvlv~v~G~l~~~~~------------------------------~~~~~F~Q 44 (318)
+||.++|.| .++|||+-. .+||||+|+|.++..+. ...|.|+|
T Consensus 106 ~LPkT~H~l~~~~~s~~vD~~~~p~~~~ilitV~G~f~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rsF~R 185 (219)
T 1q40_B 106 QLPKTRHDIIATPELFSMEVYKFPTLNGIMITLHGSFDEVAQPEVDGSASSAPSGPRGGSRYHSGPKHKRIPLSKKSFDR 185 (219)
T ss_dssp TSCEEECCTTTCGGGCEEEEEECSSTTCEEEEEEEEEEEEECCSSCCCC----------CCSSSSSCCCCCCCCCEEEEE
T ss_pred HCCCeeEecccCCCceEEEeEecCCCCeEEEEEEEEEEECCCccccccccccccccccccccccccccccccCCccceEE
Confidence 689888888 699999432 47999999999986543 24699999
Q ss_pred EEEeeee-CCeEEEEcceEeeecc
Q 021044 45 TFFLAPQ-EKGYFVLNDIFHFIGE 67 (318)
Q Consensus 45 ~F~L~~~-~~~y~v~nDifr~~~~ 67 (318)
||+|.|. +++|+|+||+||+...
T Consensus 186 tFvL~P~~~~~~~I~nD~l~ir~~ 209 (219)
T 1q40_B 186 TFVVIPGPNGSMIVASDTLLIRPY 209 (219)
T ss_dssp EEEEECC---CCEEEEEEEEEEEC
T ss_pred EEEEEECCCCcEEEEeeEEEEecC
Confidence 9999999 6799999999999764
No 192
>3nv0_A Nuclear RNA export factor 2; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=99.03 E-value=1.9e-10 Score=101.83 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=55.2
Q ss_pred CCCccceEEEE--eeecccCCCcEEEEEEEEEEec--------CCccccceeEEEEeeeeC-CeEEEEcceEeeec
Q 021044 2 SLNYSGIEIKT--AHSLESWNGGVLVMVSGSVQVK--------DFSARRKFVQTFFLAPQE-KGYFVLNDIFHFIG 66 (318)
Q Consensus 2 sl~~~~~~i~~--~D~q~s~~~gvlv~v~G~l~~~--------~~~~~~~F~Q~F~L~~~~-~~y~v~nDifr~~~ 66 (318)
+||.++|.+.+ +|||+..+++++|+|+|.++.. +....|.|+|+|+|.|.+ ++|+|+||++-.-.
T Consensus 109 ~LP~T~H~~~s~~vD~~p~~~~~l~i~V~G~f~e~~~~~~~~~~~~~~r~FsRtFiL~P~~~g~~~I~ND~L~Ir~ 184 (205)
T 3nv0_A 109 RLPATIHLMDTFVVDVFLVSATLLGFTLHGTFRDGPSAIKPENTEEHDNYFTRTFMVAPRGEGKVAIVSDQLFISS 184 (205)
T ss_dssp HSCCEEECGGGCEEEEEEECSSCEEEEEEEEEEETHHHHSCCSCSTTCEEEEEEEEEEECSTTCEEEEEEEEEEEC
T ss_pred hCCCeEEecCceEEEEEEeCCCeEEEEEEEEEEEcccccccccCCCCCceeEEEEEEEECCCCcEEEEecEEEeeC
Confidence 58999997774 8999998889999999999975 133479999999999986 79999999997643
No 193
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.03 E-value=5.9e-10 Score=101.88 Aligned_cols=64 Identities=25% Similarity=0.358 Sum_probs=59.0
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|.+|++.+.
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~ 158 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLL 158 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhC
Confidence 4789999999999999999999999999998887666678889999999999999999998875
No 194
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.02 E-value=4.2e-10 Score=100.32 Aligned_cols=60 Identities=20% Similarity=0.221 Sum_probs=53.2
Q ss_pred cceeeEeccCCC-CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~-~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||. ++++++|+++|++||.|..+.+. .++ +|||||+|.+.++|++||+.|.
T Consensus 33 ~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~--~~~---~g~afV~F~~~~~A~~Ai~~l~ 93 (229)
T 2adc_A 33 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLN 93 (229)
T ss_dssp CCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEEC--CTT---SCCEEEEESCHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEE--ECC---CCEEEEEECCHHHHHHHHHHhC
Confidence 568999999999 99999999999999999997653 222 7999999999999999999775
No 195
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.02 E-value=1e-09 Score=86.95 Aligned_cols=66 Identities=26% Similarity=0.225 Sum_probs=54.4
Q ss_pred cceeeEeccCCC-----CCCHHHHHHHhhcCCCeEEeEEEEeCC-CCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPP-----SVSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~-----~~te~~L~~~F~~fG~I~~~~i~~~~~-~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..+.|+|+||.. +-++++|+++|++||.|..+.|..+.+ .+.++|||||+|.+.++|.+|++.|+.
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG 78 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNG 78 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCC
Confidence 357899999963 237899999999999999998765443 256799999999999999999999864
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.02 E-value=4.8e-10 Score=94.82 Aligned_cols=60 Identities=20% Similarity=0.299 Sum_probs=54.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+||+.|.
T Consensus 98 ~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 1fje_B 98 AARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQ 157 (175)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhC
Confidence 46899999999999999999999999998763 4567789999999999999999999875
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.02 E-value=3.8e-10 Score=102.25 Aligned_cols=60 Identities=23% Similarity=0.287 Sum_probs=53.8
Q ss_pred cceeeEeccCCCCC---------CHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSV---------SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~---------te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++||||||+..+ ++++|+.+|++||.|..+.|. .++|||||+|.+.++|+.|+++|..
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~------~~kG~AFV~F~~~~~Ae~A~~am~g 201 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYV------ESKNCGFVKFKYQANAEFAKEAMSN 201 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEE------GGGTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEE------CCCCEEEEEeCCHHHHHHHHHHhCC
Confidence 56899999999998 799999999999999998664 2479999999999999999999863
No 198
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.01 E-value=2.2e-09 Score=97.90 Aligned_cols=61 Identities=21% Similarity=0.289 Sum_probs=54.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++||.|..+.+. .++ +|||||+|.+.++|.+||+.|..
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~--~~~---~g~afV~f~~~~~A~~A~~~l~g 266 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV--PGR---HDIAFVEFDNEVQAGAARDALQG 266 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe--cCC---CcEEEEEeCCHHHHHHHHHHcCC
Confidence 56889999999999999999999999999998664 211 58999999999999999998864
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.1e-09 Score=85.05 Aligned_cols=54 Identities=20% Similarity=0.274 Sum_probs=47.1
Q ss_pred eeeEeccCCCCCCHHH----HHHHhhcC-CCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 252 KSVYVRNLPPSVSESE----IAEEFKKF-GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~----L~~~F~~f-G~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
+.|||+|||+++++++ |+++|++| |+|..+ .+ |||||.|.+.++|++|++.|..
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G 68 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMEN 68 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcC
Confidence 4599999999999887 66899999 599885 22 9999999999999999999863
No 200
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.98 E-value=1.2e-10 Score=98.57 Aligned_cols=63 Identities=19% Similarity=0.319 Sum_probs=53.0
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|.+||.+..+ +.++...+.++|||||+|.+.++|++||+ |.
T Consensus 12 ~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~ 74 (175)
T 1fje_B 12 TPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LT 74 (175)
T ss_dssp SSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GG
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cC
Confidence 56999999999999999999999999987652 22333456779999999999999999995 54
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.96 E-value=9.2e-10 Score=100.09 Aligned_cols=59 Identities=22% Similarity=0.309 Sum_probs=53.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++|+++|+++|++||.|..+.+. ..+|||||+|.+.++|.+||..+.
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~~kg~afV~f~~~~~A~~A~~~l~ 79 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFIN------RDRGFGFIRLESRTLAEIAKAELD 79 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEe------CCCcEEEEEECCHHHHHHHHHHcC
Confidence 56899999999999999999999999999997652 247999999999999999999775
No 202
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.96 E-value=3.4e-10 Score=97.94 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=52.2
Q ss_pred ceeeEeccCCC-CCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPP-SVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~-~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
+++|||+|||. ++++++|+++|++||.|..+.+. .++ +|||||+|.+.++|.+||+.|.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~--~~~---~g~afV~f~~~~~a~~A~~~l~ 62 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKIL--FNK---KENALVQMADGNQAQLAMSHLN 62 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECS--TTC---SSCCEEECTTTHHHHHHHHHHT
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEE--eCC---CCEEEEEECCHHHHHHHHHHhC
Confidence 58999999999 99999999999999999996552 222 7899999999999999999775
No 203
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.94 E-value=1e-09 Score=100.65 Aligned_cols=61 Identities=26% Similarity=0.414 Sum_probs=52.1
Q ss_pred ccceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHH
Q 021044 249 EEIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVE 311 (318)
Q Consensus 249 ~~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~ 311 (318)
...++|||+|||.++++++|+++|+.||.|..+.|..+. ..++|||||+|.+.++|++||+
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~--~~~~g~afV~f~~~~~A~~A~~ 99 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSL--KKNFRFARIEFARYDGALAAIT 99 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECT--TSSSEEEEEEESSHHHHHHHHT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC--CCCcEEEEEEECCHHHHHHHHH
Confidence 357999999999999999999999999999998775433 2358999999999999999995
No 204
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.93 E-value=4e-09 Score=82.89 Aligned_cols=59 Identities=17% Similarity=0.134 Sum_probs=48.1
Q ss_pred ceeeEeccCC-------CCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLP-------PSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp-------~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..+|-|.... .++++++|+++|++||.|..+.|. +.++|||||+|.+.++|..||+.+.
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~ 75 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV 75 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC
Confidence 3456555443 468999999999999999998664 3568999999999999999998754
No 205
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.93 E-value=1.5e-09 Score=91.25 Aligned_cols=58 Identities=21% Similarity=0.410 Sum_probs=49.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcC----C-------CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~f----G-------~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
+.++|||+|||.++++++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|| .+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~------~~~~g~afV~f~~~~~A~~A~-~~~ 71 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFD 71 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE------ETTTTEEEEEESSHHHHHHHG-GGT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe------cCCCCEEEEEeCCHHHHHHHH-HhC
Confidence 46899999999999999999999999 6 6666533 234799999999999999999 553
No 206
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.92 E-value=1.6e-09 Score=99.06 Aligned_cols=64 Identities=13% Similarity=0.159 Sum_probs=57.2
Q ss_pred cceeeEeccCCCCC-CHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSV-SESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~-te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++ ++++|+++|+.||.|..+.|..+ .+|.++|||||+|.+.++|.+|++.|.
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~ 247 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG-QDGQLKGFAVLEYETAEMAEEAQQQAD 247 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC-SSCCEEEEEEEECSSHHHHHHHHHHHT
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC-CCCCcccEEEEEeCCHHHHHHHHHHhC
Confidence 46889999999995 99999999999999999877544 467789999999999999999999885
No 207
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.92 E-value=9.7e-10 Score=100.81 Aligned_cols=64 Identities=23% Similarity=0.448 Sum_probs=54.9
Q ss_pred cceeeEeccCCCC-CCHHHHHHHhhcCCCeEEeEEEEeCC-CCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSR-KDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~-~te~~L~~~F~~fG~I~~~~i~~~~~-~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.+ +++++|+++|++||.|..+.+..+.. ++.++|||||+|.+.++|.+|| .|.
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~ 274 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMN 274 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGT
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hhc
Confidence 4689999999999 99999999999999999976643332 2778999999999999999999 775
No 208
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.91 E-value=1.4e-09 Score=103.40 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=52.1
Q ss_pred cceeeEecc--CCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRN--LPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgn--Lp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
...+||||| |++.+++++|+++|++||.|..+. +.. +||||||+|.+.++|++||++|..
T Consensus 17 ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~--~~~----~kgfaFV~f~~~~~A~~Ai~~lnG 78 (345)
T 3tht_A 17 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALL--MPP----NKPYSFARYRTTEESKRAYVTLNG 78 (345)
T ss_dssp CCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEE--CCT----TCSEEEEEESSHHHHHHHHHHTTT
T ss_pred CCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEE--EeC----CCCEEEEEECCHHHHHHHHHHhCC
Confidence 457899999 578999999999999999998853 322 579999999999999999999864
No 209
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.87 E-value=2.3e-09 Score=92.13 Aligned_cols=58 Identities=21% Similarity=0.397 Sum_probs=48.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcC----C-------CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKF----G-------ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~f----G-------~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..++|||+|||.++++++|+++|++| | .|..+.+ +.++|||||+|.+.++|++|| .+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~ 71 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFD 71 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGT
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-Hhc
Confidence 45899999999999999999999999 5 5555433 345899999999999999999 554
No 210
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=7.4e-09 Score=82.30 Aligned_cols=62 Identities=16% Similarity=0.165 Sum_probs=50.6
Q ss_pred cceeeEeccCCCCCC-----------HHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVS-----------ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~t-----------e~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..+.|+|+||..... +++|+++|++||.|..+.| .+. .++|||||+|.+.++|.+||+.|..
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 468899999944432 5899999999999999844 222 2689999999999999999998863
No 211
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.81 E-value=7.3e-09 Score=89.44 Aligned_cols=61 Identities=18% Similarity=0.218 Sum_probs=53.2
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCC-CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG-~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++|| .|..+.+. .+ .+|||||+|.+.++|.+|++.|..
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~--~~---~~g~afV~f~~~~~A~~A~~~l~g 180 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF--QK---DRKMALIQMGSVEEAVQALIDLHN 180 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEES--ST---TSSCEEEECSSHHHHHHHHHHHTS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEE--eC---CCcEEEEEeCCHHHHHHHHHHhcC
Confidence 358999999999999999999999999 99997552 21 379999999999999999998863
No 212
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.81 E-value=1.1e-08 Score=91.03 Aligned_cols=61 Identities=18% Similarity=0.201 Sum_probs=53.3
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCC-CeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFG-ELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG-~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..++|||+|||.++++++|+++|++|| .|..+.+. . ..+|||||+|.+.++|.+||+.|..
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~-~----~~~g~afV~f~~~~~A~~Ai~~l~g 211 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFF-Q----KDRKMALIQMGSVEEAVQALIDLHN 211 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEEC-S----SSTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEE-E----CCCcEEEEEECCHHHHHHHHHHHCC
Confidence 358999999999999999999999999 99997552 2 1379999999999999999998853
No 213
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.77 E-value=2.6e-09 Score=84.36 Aligned_cols=59 Identities=24% Similarity=0.313 Sum_probs=47.6
Q ss_pred eccCCCCCCHHHHHHHh------------hcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 256 VRNLPPSVSESEIAEEF------------KKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 256 VgnLp~~~te~~L~~~F------------~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
+.||+.++++++|+++| ++||.|..+.|. +...+.++|||||+|.+.++|++|++.|..
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~-~~~~~~~~G~~fV~f~~~~~A~~A~~~lng 90 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVC-DNLGDHLVGNVYVKFRREEDAEKAVIDLNN 90 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC-CSSSSSSEEEEEEEESCHHHHHHHHHHHTT
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEE-eCCCCCccEEEEEEECCHHHHHHHHHHHCC
Confidence 45677777777777666 999999998774 333467799999999999999999999864
No 214
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.69 E-value=3.6e-08 Score=79.67 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=53.4
Q ss_pred cceeeEeccCCCC-----CCHHHHHHHhhcCCCeEEeEEEEeCC----CCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 250 EIKSVYVRNLPPS-----VSESEIAEEFKKFGELSSEGVVIRSR----KDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 250 ~~~~IfVgnLp~~-----~te~~L~~~F~~fG~I~~~~i~~~~~----~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
..+.|+++|+-.. --+++|+++|++||.|..+.|..+.. ++.++||+||+|.+.++|.+|+++|..
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnG 93 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 93 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCC
Confidence 3578999998321 23689999999999999998876543 244579999999999999999999864
No 215
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.68 E-value=2.4e-08 Score=78.95 Aligned_cols=65 Identities=18% Similarity=0.244 Sum_probs=50.7
Q ss_pred ceeeEeccC--CCCC--------CHHHHHHHhhcCCCeEEeEEEEeCCC--CCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 251 IKSVYVRNL--PPSV--------SESEIAEEFKKFGELSSEGVVIRSRK--DVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 251 ~~~IfVgnL--p~~~--------te~~L~~~F~~fG~I~~~~i~~~~~~--~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.+.|.++|+ +... ..++|+++|++||.|..+.|..+... +.++|||||+|.+.++|.+|+++|+.
T Consensus 5 s~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 5 TEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 466788887 2233 23799999999999999876544332 35689999999999999999999874
No 216
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=2e-07 Score=75.71 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=52.1
Q ss_pred cccceeeEeccCCCC-CCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcC-HHHHHHHHHHh
Q 021044 248 EEEIKSVYVRNLPPS-VSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFED-MTGVRNAVEVC 313 (318)
Q Consensus 248 ~~~~~~IfVgnLp~~-~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~-~~~a~~Al~al 313 (318)
...++-|||+||+.+ ++.++|+++|++||.|..|.+.. +...|||.|.+ ..+|..|++++
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~------g~~tgfVrf~~~~~~A~~av~~l 76 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVR------GAKEGIILFKEKAKEALGKAKDA 76 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCT------TCSEEEEEESSCHHHHHHHHHHT
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCChHHHHHHHHHh
Confidence 347899999999999 99999999999999999976631 23469999999 89999999987
No 217
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.30 E-value=7.8e-07 Score=71.34 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=39.7
Q ss_pred HHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 265 ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 265 e~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
+++|+++|++||.|..+.| ..+ .++|||||+|.+.++|.+|++.|..
T Consensus 31 ~edl~~~f~kfG~V~~v~i--~~~--~~~G~~fV~f~~~e~A~~Ai~~lnG 77 (114)
T 3s6e_A 31 KDDVIEECNKHGGVIHIYV--DKN--SAQGNVYVKCPSIAAAIAAVNALHG 77 (114)
T ss_dssp HHHHHHHHTTTTCCSEEEE--CTT--CTTCCEEEECSSHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCEEEEEE--ecC--CCcEEEEEEECCHHHHHHHHHHhCC
Confidence 3689999999999999654 333 3589999999999999999999864
No 218
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export, translation; 1.75A {Candida albicans} SCOP: d.17.4.2 PDB: 1q40_A
Probab=97.85 E-value=1.2e-05 Score=69.32 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=39.3
Q ss_pred CCCccceEEEEeeecccCCC-cEEEEEEEEEEecCCccccceeEEEEeeee
Q 021044 2 SLNYSGIEIKTAHSLESWNG-GVLVMVSGSVQVKDFSARRKFVQTFFLAPQ 51 (318)
Q Consensus 2 sl~~~~~~i~~~D~q~s~~~-gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~ 51 (318)
.||-+.+.|.++|||+-++. .+||.|.|.|++++.. +++|.|+|.|..+
T Consensus 97 ~lP~SqHqL~SlDahpIpGq~T~lI~asGkVrFDesg-r~~fgQsf~Lta~ 146 (201)
T 1q42_A 97 QTPLSSHQLTSYDGHLIPGTGTFVVHFSAKVRFDQSG-RNRLGESADLFQE 146 (201)
T ss_dssp TSCCEEEEEEEEEEEEETTTTEEEEEEEEEEEEBCSS-CCTTSCCC-----
T ss_pred hCCCcceeeeeeecceeCCCcEEEEEEeEEEEECCCC-cCcCCCcEEEecc
Confidence 48888999999999998744 5999999999999875 7999999999876
No 219
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.85 E-value=2.9e-05 Score=68.36 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=43.7
Q ss_pred CHHHHHHHhhcCCCeEEeEEEEeCCC----CCCccEEEEEEcCHHHHHHHHHHhhh
Q 021044 264 SESEIAEEFKKFGELSSEGVVIRSRK----DVGICYAFVEFEDMTGVRNAVEVCIL 315 (318)
Q Consensus 264 te~~L~~~F~~fG~I~~~~i~~~~~~----~~~rgfgFV~F~~~~~a~~Al~al~~ 315 (318)
.+++|++.|++||.|..+.|...... +.++||+||+|.+.++|.+|++.|..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~g 197 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNG 197 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcC
Confidence 45789999999999999877544332 36789999999999999999999964
No 220
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00029 Score=54.04 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=41.2
Q ss_pred ceeeEeccCC----CCCCH----HHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLP----PSVSE----SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp----~~~te----~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..+|+|..++ .++-. .+|.+.|.+||.|..+++. . +.+||+|.+.++|.+||+ |.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~--~------d~~fVtF~d~~sAlaAi~-mn 69 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFV--E------DKMWVTFLEGSSALNVLS-LN 69 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEEC--S------SSEEEEESSHHHHHHGGG-GT
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEe--c------CCEEEEECChHHHHHHHh-cC
Confidence 3567777665 23333 6899999999999987653 2 238999999999999997 54
No 221
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.79 E-value=0.00064 Score=52.42 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=42.1
Q ss_pred ceeeEeccCCCC-----CCH----HHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPS-----VSE----SEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~-----~te----~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
..+|+|..++.+ +.. .+|.+.|.+||.|..+++. .++ +||+|.+.++|.+||+ |.
T Consensus 15 D~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v--~d~------~fVtF~d~~sAl~AI~-ld 78 (95)
T 1ufw_A 15 DATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRIN--QGQ------MLVTFADSHSALSVLD-VD 78 (95)
T ss_dssp TCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEE--TTE------EEEECSCSHHHHHHHH-GG
T ss_pred CCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEe--cCc------EEEEEcChHHHHHHHh-cC
Confidence 467888877632 222 5789999999999886654 221 8999999999999998 54
No 222
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein, repeat, leucine- rich repeat, nuclear transport; 2.8A {Saccharomyces cerevisiae} SCOP: d.17.4.2
Probab=96.79 E-value=0.0012 Score=56.29 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=27.1
Q ss_pred CCccceEEEEeeecccC-CCcEEEEEEEEEEecCCccccceeEEEEeeee
Q 021044 3 LNYSGIEIKTAHSLESW-NGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQ 51 (318)
Q Consensus 3 l~~~~~~i~~~D~q~s~-~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~ 51 (318)
++-++++|.++|||--. .++|+|+|.|.+.++... +-+|.|+|+|.|.
T Consensus 73 ~p~T~hel~S~D~HVIngsgsivv~VsgkVRFdEsg-rd~fgEtfvLvpn 121 (184)
T 1of5_B 73 VVQTQHALTGVDYHAIPGSGTLICNVNCKVRFDESG-RDKMGQDATVPIQ 121 (184)
T ss_dssp SCCCEEEEEEEEEEEETTTTEEEEEEEEEEECC-----------------
T ss_pred CCCceEEEEeEEEEEECCCCeEEEEEEEEEEECCCC-CCCCCCeEEECCC
Confidence 45567899999999865 446999999999998653 4699999999976
No 223
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.63 E-value=0.036 Score=42.83 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=43.4
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
.+-+++ +.|..+...||..+|+.||.|.- ....+ .-|||.|.+.+.|..||..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I---~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQI---SWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCC---EEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEE---EEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 355666 99999999999999999996543 33333 35999999999999998865
No 224
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.32 E-value=0.019 Score=44.47 Aligned_cols=54 Identities=22% Similarity=0.328 Sum_probs=43.1
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
.+-+++ +.|..+...+|..+|+.||.|. |....+ .-|||.|.+.+.|..||..+
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fggv~---I~WidD-----TsAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ---ISWIDD-----TSAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEEEE---EEEEET-----TEEEEEEEEECHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCCEE---EEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 355677 9999999999999999999443 333344 35999999999999998865
No 225
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.29 E-value=0.057 Score=42.67 Aligned_cols=58 Identities=16% Similarity=0.069 Sum_probs=49.1
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcC-----CCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKF-----GELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~f-----G~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
.++|-+-|||..++...++.+...+ |.|..+ .++.+- |-|+|+|.|...|-+|.=+|.
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI--~L~pDH----~GAivef~d~~~AgKasLaL~ 83 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKI--LLVSDF----NGAIIIFRDSKFAAKMLMILN 83 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEE--EEETTT----TEEEEECSCHHHHHHHHHHHS
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEE--EEecCC----CceEEEEccchhhHHHHhhcC
Confidence 5788889999999999999999999 999984 556553 459999999999998876664
No 226
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.49 E-value=0.16 Score=39.47 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=44.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhc-----CCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKK-----FGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 312 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~-----fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~a 312 (318)
-+++|.|.|||..+.++.|+-+|++ -|.|..+ .... +-|+|+|.+...+++.|+.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v--~~~~------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSW--QRLG------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEE--EEET------TEEEEEESSHHHHHHHHTC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEE--EEcC------CcEEEEEcChHHHHHHhcC
Confidence 3588999999999999999999986 3566653 3222 5589999999999999876
No 227
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.31 E-value=0.13 Score=41.07 Aligned_cols=61 Identities=16% Similarity=0.200 Sum_probs=47.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhhhcc
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCILMW 317 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~~~~ 317 (318)
..+.|-|-+.|... ...+...|++||.|..... . .+..+-.|.|.+..+|++||.....++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~---~~~NWihI~Y~s~~~A~rAL~kNG~ii 83 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---S---NTGNWMHIRYQSKLQARKALSKDGRIF 83 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---C---SSSSEEEEEESSHHHHHHHHTTTTCEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---C---CCCCeEEEEeCCHHHHHHHHHhCCeEe
Confidence 45778888888875 5678888999999988432 1 235788999999999999998766544
No 228
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.08 E-value=0.024 Score=55.55 Aligned_cols=57 Identities=19% Similarity=0.350 Sum_probs=41.5
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHH
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEV 312 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~a 312 (318)
..++|||. .+..+++.+|.+.|++||+|..+ .+..++| .|+.|+|.+.+++++++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~--~~~~~~g---~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNH--FFYESFG---LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCE--EEECSSS---EEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceE--EEEccCC---eEEEEEeCCHHHHHHHHhc
Confidence 45889997 79999999999999999999995 4454433 7999999999998877644
No 229
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.55 E-value=0.31 Score=37.03 Aligned_cols=62 Identities=15% Similarity=0.241 Sum_probs=45.1
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCC--C-CCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK--D-VGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~--~-~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|-||+||.++|++++.+.++..+.+..... +..+. + ...+-|+|.|.+.+++..-.+...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~f-v~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF-FSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE-EESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEE-eCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 57899999999999999999999887655432 22221 1 114678999999888777665543
No 230
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=81.97 E-value=0.72 Score=37.37 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=43.5
Q ss_pred eeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEe-----------CCC--C-CCccEEEEEEcCHHHHHHHHHHhhhcc
Q 021044 252 KSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIR-----------SRK--D-VGICYAFVEFEDMTGVRNAVEVCILMW 317 (318)
Q Consensus 252 ~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~-----------~~~--~-~~rgfgFV~F~~~~~a~~Al~al~~~~ 317 (318)
..|-|-+.|.... ..+-+.|++||.|....-..+ ..+ + .+.++-.|+|++..+|++||+..+.+|
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ii 86 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAVF 86 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCEE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeEe
Confidence 4566667766654 556778999999976210000 000 1 135678999999999999999887655
No 231
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=75.64 E-value=3.9 Score=31.70 Aligned_cols=57 Identities=11% Similarity=0.083 Sum_probs=43.0
Q ss_pred eeeEeccCCCCC-C----HHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHhh
Q 021044 252 KSVYVRNLPPSV-S----ESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVCI 314 (318)
Q Consensus 252 ~~IfVgnLp~~~-t----e~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al~ 314 (318)
++|+|-||+..+ . ...++.+|..|+++..... +++ ..-..|.|.+.++|.+|-..|+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~-lkS-----FRRirv~F~~~~~A~~AR~~Lh 67 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQY-FKS-----FKRVRINFSNPLSAADARLRLH 67 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEE-ETT-----TTEEEEECSSTTHHHHHHHTST
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceee-cCc-----ceEEEEEeCChHHHHHHHHHhc
Confidence 679999998765 2 2578999999999988543 222 2235799999999999887775
No 232
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=75.52 E-value=2.8 Score=32.10 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=39.6
Q ss_pred cceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCC---C-CCccEEEEEEcCHHHHHHHHHHh
Q 021044 250 EIKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRK---D-VGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 250 ~~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~---~-~~rgfgFV~F~~~~~a~~Al~al 313 (318)
..-+|-||.||+.+|++++.+.++.+=.+.. ......+ + ...+-|+|.|.+.+++..-.+..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~--~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDY--FEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEE--CCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHS
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccce--EEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 3468999999999999987766665433322 1111111 1 11356899999998877655544
No 233
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=72.79 E-value=7.4 Score=38.26 Aligned_cols=54 Identities=22% Similarity=0.316 Sum_probs=42.2
Q ss_pred ceeeEeccCCCCCCHHHHHHHhhcCCCeEEeEEEEeCCCCCCccEEEEEEcCHHHHHHHHHHh
Q 021044 251 IKSVYVRNLPPSVSESEIAEEFKKFGELSSEGVVIRSRKDVGICYAFVEFEDMTGVRNAVEVC 313 (318)
Q Consensus 251 ~~~IfVgnLp~~~te~~L~~~F~~fG~I~~~~i~~~~~~~~~rgfgFV~F~~~~~a~~Al~al 313 (318)
.+-++++ ++..+...+|.++|+.||.+. |....+ ..+||.|.+.+.|..+++++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~---V~widd-----t~a~V~~~~~~~a~~~l~~~ 493 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ---ISWIDD-----TSAFVSLSQPEQVQIAVNTS 493 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE---EEECSS-----SEEEEECSCHHHHHHHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE---EEEEcC-----CeEEEEECCHHHHHHHHHHH
Confidence 3556666 888889999999999999654 332332 45999999999999998877
No 234
>3fka_A Uncharacterized NTF-2 like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.69A {Silicibacter pomeroyi dss-3}
Probab=52.54 E-value=14 Score=28.50 Aligned_cols=47 Identities=9% Similarity=0.161 Sum_probs=33.5
Q ss_pred EEEEeeecccCCCcEEEEEEEEEEecCCccccceeEEEEeeeeCCeEEEEcceEee
Q 021044 9 EIKTAHSLESWNGGVLVMVSGSVQVKDFSARRKFVQTFFLAPQEKGYFVLNDIFHF 64 (318)
Q Consensus 9 ~i~~~D~q~s~~~gvlv~v~G~l~~~~~~~~~~F~Q~F~L~~~~~~y~v~nDifr~ 64 (318)
.|.++|... +.-++.|. +.+. .++|+..|.|...+|+|.|.|=+|++
T Consensus 73 ~i~~I~i~g---d~A~a~v~--~~~~----~~~f~D~~~L~k~dg~WkIv~K~~~~ 119 (120)
T 3fka_A 73 AISSVSVQG---DIAMLHVE--NDWA----GMRFDDFLTVLLHEGSWRIVSKVYRI 119 (120)
T ss_dssp EEEEEEEET---TEEEEEEE--EEET----TEEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEEEC---CEEEEEEE--EEcC----CCceEEEEEEEEeCCEEEEEEEEEEc
Confidence 566666644 33344444 2232 25799999999999999999999987
No 235
>4i4k_A Uncharacterized protein SGCJ; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: CIT PG4 1PE; 1.70A {Streptomyces globisporus}
Probab=51.31 E-value=71 Score=24.89 Aligned_cols=39 Identities=10% Similarity=0.199 Sum_probs=26.6
Q ss_pred CcEEEEEEEEEEecCCc---cccceeEEEEeeeeCCeEEEEc
Q 021044 21 GGVLVMVSGSVQVKDFS---ARRKFVQTFFLAPQEKGYFVLN 59 (318)
Q Consensus 21 ~gvlv~v~G~l~~~~~~---~~~~F~Q~F~L~~~~~~y~v~n 59 (318)
+..++...|.+...+.. ..+.+.+|++|...+++|.|..
T Consensus 93 d~A~v~~~~~~~~~g~~~~~~~~~~~~T~v~~r~~g~WrI~~ 134 (143)
T 4i4k_A 93 GIALLITEGGILAPGETEASGDGAVRASWLAVEQDGQWRLAA 134 (143)
T ss_dssp TEEEEEEEEEEECTTCSSCCGGGEEEEEEEEEEETTEEEEEE
T ss_pred CEEEEEeccceecCCCCCCCcccceEEEEEEEEECCcEEEEE
Confidence 33445555656555542 1356899999999999999876
No 236
>3duk_A NTF2-like protein of unknown function; structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.20A {Methylobacillus flagellatus KT} SCOP: d.17.4.0
Probab=31.50 E-value=50 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=23.3
Q ss_pred cceeEEEEeeeeCCeEEEEcceEee
Q 021044 40 RKFVQTFFLAPQEKGYFVLNDIFHF 64 (318)
Q Consensus 40 ~~F~Q~F~L~~~~~~y~v~nDifr~ 64 (318)
.+|+-.|.|...+|+|.|.|=+|++
T Consensus 99 ~~f~D~l~L~k~dg~WkIv~K~~~~ 123 (125)
T 3duk_A 99 FKFSDLFLLLKLDGKWTIVNKVFHL 123 (125)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CeEEEEEEEEEeCCEEEEEEEEEEe
Confidence 5899999999999999999999986
No 237
>3d9r_A Ketosteroid isomerase-like protein; YP_049581.1, structural joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 2.40A {Pectobacterium atrosepticum} SCOP: d.17.4.27
Probab=30.47 E-value=1.4e+02 Score=22.02 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=19.2
Q ss_pred eeEEEEeeee-CCeEEEEcceEeee
Q 021044 42 FVQTFFLAPQ-EKGYFVLNDIFHFI 65 (318)
Q Consensus 42 F~Q~F~L~~~-~~~y~v~nDifr~~ 65 (318)
+.-+++|..+ +|+|.|..|+|...
T Consensus 109 ~~~~~v~~~~~dG~W~i~~~~~s~~ 133 (135)
T 3d9r_A 109 YQELFLLRKSATGSWQTARYCTSKI 133 (135)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred ccEEEEEEecCCCcEEEEEEeeccc
Confidence 4456778887 89999999999764
No 238
>3blz_A NTF2-like protein of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.75A {Shewanella baltica} SCOP: d.17.4.14
Probab=22.24 E-value=95 Score=23.50 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=23.6
Q ss_pred cceeEEEEeeeeCCeEEEEcceEeeec
Q 021044 40 RKFVQTFFLAPQEKGYFVLNDIFHFIG 66 (318)
Q Consensus 40 ~~F~Q~F~L~~~~~~y~v~nDifr~~~ 66 (318)
.+|.-.|.|...+++|.|.+-+|+...
T Consensus 100 ~~~~d~~~l~k~dg~WkI~~~~~~~~~ 126 (128)
T 3blz_A 100 FRFTDFFNLLKVEGKWTVVSKIYHTHP 126 (128)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEECC
T ss_pred CceEEeEEEEEECCEEEEEEEEEEecc
Confidence 468888999999999999999998754
No 239
>3gzr_A Uncharacterized protein with A NTF2-like fold; structural genomics, joint center for struct genomics, JCSG, protein structure initiative; HET: MSE GOL; 1.40A {Caulobacter vibrioides}
Probab=21.75 E-value=2.8e+02 Score=21.45 Aligned_cols=29 Identities=7% Similarity=0.045 Sum_probs=23.7
Q ss_pred cceeEEEEeeeeCCeEEEEcceEeeeccc
Q 021044 40 RKFVQTFFLAPQEKGYFVLNDIFHFIGEE 68 (318)
Q Consensus 40 ~~F~Q~F~L~~~~~~y~v~nDifr~~~~~ 68 (318)
.++.++++|...+++|.|..+--..++..
T Consensus 105 ~~~~~t~v~vr~dg~WrI~a~h~s~v~p~ 133 (146)
T 3gzr_A 105 AHDRLTLLAVEREGVWRFIHGHNTIVNPD 133 (146)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEECCTT
T ss_pred cCcEEEEEEEEECCEEEEEEEecccCcCC
Confidence 46789999999999999998877766543
No 240
>2r4i_A Uncharacterized protein; NTF2-like protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE CIT; 1.60A {Cytophaga hutchinsonii atcc 33406} SCOP: d.17.4.15
Probab=21.43 E-value=2.2e+02 Score=20.46 Aligned_cols=18 Identities=11% Similarity=0.032 Sum_probs=11.8
Q ss_pred eeEEEEeeeeCCeEEEEc
Q 021044 42 FVQTFFLAPQEKGYFVLN 59 (318)
Q Consensus 42 F~Q~F~L~~~~~~y~v~n 59 (318)
+-+|.+....+++|.|..
T Consensus 99 ~r~t~vw~r~~g~W~iv~ 116 (123)
T 2r4i_A 99 FRYLRVWKLFDGNWKVIA 116 (123)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred EEEEEEEEEeCCeEEEEE
Confidence 334555566888998764
No 241
>3hx8_A MLR2180 protein, putative ketosteroid isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE UNL PG4; 1.45A {Mesorhizobium loti}
Probab=20.13 E-value=2.5e+02 Score=20.21 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=15.1
Q ss_pred EEEEeeee-CCeEEEEcceEe
Q 021044 44 QTFFLAPQ-EKGYFVLNDIFH 63 (318)
Q Consensus 44 Q~F~L~~~-~~~y~v~nDifr 63 (318)
-+.++..+ +|+|.+..|+|-
T Consensus 104 ~~~v~~r~~dG~W~i~~~~~~ 124 (129)
T 3hx8_A 104 YVVVWRKGQDGGWKLYRDIWN 124 (129)
T ss_dssp EEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEEECCCCcEEEEEeecc
Confidence 34555667 789999999885
Done!