Query 021047
Match_columns 318
No_of_seqs 290 out of 1639
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 11:58:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g33_B CCND3 protein; Ser/Thr 100.0 1.2E-49 4.1E-54 370.1 24.9 238 6-251 31-271 (306)
2 1g3n_C V-cyclin; cyclin-depend 100.0 8.1E-49 2.8E-53 356.4 25.1 237 2-247 8-248 (257)
3 2f2c_A Cyclin homolog, V-cycli 100.0 1.6E-48 5.4E-53 353.9 25.7 235 3-246 10-247 (254)
4 2cch_B Cyclin A2, cyclin-A; co 100.0 4.4E-49 1.5E-53 358.8 21.2 241 12-275 3-245 (260)
5 1f5q_B Gamma herpesvirus cycli 100.0 1E-48 3.6E-53 354.0 17.4 228 4-246 13-241 (252)
6 2b9r_A Human cyclin B1; cell c 100.0 5.6E-48 1.9E-52 353.1 19.7 241 12-275 3-244 (269)
7 2w96_A G1/S-specific cyclin-D1 100.0 6.4E-47 2.2E-51 346.4 25.8 238 4-250 16-260 (271)
8 1w98_B Cyclin E, G1/S-specific 100.0 4.6E-45 1.6E-49 336.0 24.4 225 6-246 9-241 (283)
9 2i53_A Cyclin K; cell cycle, t 100.0 2E-35 6.8E-40 268.1 18.2 206 35-246 27-250 (258)
10 2ivx_A Cyclin-T2; transcriptio 100.0 7.5E-34 2.6E-38 257.7 20.9 192 45-246 26-239 (257)
11 3rgf_B Cyclin-C; protein kinas 100.0 8E-34 2.7E-38 261.3 19.6 188 47-247 40-242 (285)
12 1zp2_A RNA polymerase II holoe 100.0 6.3E-34 2.2E-38 255.0 17.8 186 50-247 28-220 (235)
13 2pk2_A Cyclin-T1, protein TAT; 100.0 5.8E-33 2E-37 262.8 13.4 193 45-247 33-247 (358)
14 1jkw_A Cyclin H; cell cycle, c 100.0 1.6E-31 5.6E-36 249.8 22.7 194 47-247 54-261 (323)
15 1c9b_A General transcription f 99.9 2.6E-26 9E-31 201.6 20.5 186 48-246 3-188 (207)
16 1ais_B TFB TFIIB, protein (tra 99.9 2.2E-22 7.6E-27 175.5 21.0 186 48-246 7-194 (200)
17 3k7a_M Transcription initiatio 99.7 3.2E-18 1.1E-22 161.1 7.2 184 49-245 125-320 (345)
18 4bbr_M Transcription initiatio 99.4 1.2E-12 4.1E-17 122.9 10.1 183 51-246 127-321 (345)
19 2pmi_B PHO85 cyclin PHO80, ami 98.4 3.4E-06 1.2E-10 76.4 12.0 108 53-164 77-186 (293)
20 1ais_B TFB TFIIB, protein (tra 96.9 0.0055 1.9E-07 52.3 10.2 89 55-148 110-198 (200)
21 1c9b_A General transcription f 95.6 0.061 2.1E-06 45.9 9.5 86 54-144 103-188 (207)
22 4bbr_M Transcription initiatio 93.4 0.48 1.6E-05 43.9 10.4 91 148-246 125-215 (345)
23 3k7a_M Transcription initiatio 91.6 0.21 7.1E-06 46.3 5.5 88 151-246 128-215 (345)
24 1zp2_A RNA polymerase II holoe 86.9 2.7 9.2E-05 36.2 8.7 87 152-246 31-126 (235)
25 2ivx_A Cyclin-T2; transcriptio 86.0 6.2 0.00021 34.3 10.7 86 55-143 148-238 (257)
26 3h4c_A Transcription factor TF 85.3 16 0.00056 30.9 13.1 148 53-210 15-170 (260)
27 2i53_A Cyclin K; cell cycle, t 84.1 5.5 0.00019 34.6 9.5 87 55-144 153-250 (258)
28 3rgf_B Cyclin-C; protein kinas 81.0 3.8 0.00013 36.5 7.2 82 55-143 159-240 (285)
29 2pk2_A Cyclin-T1, protein TAT; 80.5 4.9 0.00017 37.1 8.0 86 55-143 155-245 (358)
30 2b9r_A Human cyclin B1; cell c 74.9 4.5 0.00015 35.6 5.8 56 55-113 140-195 (269)
31 2cch_B Cyclin A2, cyclin-A; co 74.7 9.2 0.00031 33.3 7.7 83 55-142 141-225 (260)
32 2f2c_A Cyclin homolog, V-cycli 74.3 16 0.00055 31.6 9.2 82 56-142 155-245 (254)
33 1g3n_C V-cyclin; cyclin-depend 73.8 15 0.00052 31.8 9.0 83 55-142 153-245 (257)
34 2w96_A G1/S-specific cyclin-D1 67.0 35 0.0012 29.7 9.8 67 178-246 81-149 (271)
35 1jkw_A Cyclin H; cell cycle, c 66.9 38 0.0013 30.5 10.3 54 154-212 62-117 (323)
36 3g33_B CCND3 protein; Ser/Thr 61.9 29 0.001 31.0 8.4 67 73-144 195-266 (306)
37 3m03_A ORC6, origin recognitio 49.2 76 0.0026 23.3 8.9 77 57-140 6-88 (95)
38 1w98_B Cyclin E, G1/S-specific 46.8 1E+02 0.0035 26.9 9.3 54 191-246 88-143 (283)
39 1f5q_B Gamma herpesvirus cycli 28.9 2.7E+02 0.0093 23.7 9.1 65 180-246 75-141 (252)
40 1unl_D Cyclin-dependent kinase 26.5 2.7E+02 0.0092 22.9 9.6 66 93-164 121-192 (208)
41 3o0g_D Cyclin-dependent kinase 24.4 2.5E+02 0.0087 21.9 9.5 69 51-123 28-108 (149)
42 2wh0_Q Pkcev3, protein kinase 21.3 71 0.0024 17.7 2.2 18 129-146 12-29 (31)
43 3m03_A ORC6, origin recognitio 21.2 1.5E+02 0.005 21.8 4.7 46 198-246 47-92 (95)
No 1
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-49 Score=370.13 Aligned_cols=238 Identities=18% Similarity=0.294 Sum_probs=207.7
Q ss_pred CCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCC
Q 021047 6 ENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQ 85 (318)
Q Consensus 6 ~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~ 85 (318)
.||..+ |.+||+.+|+++|.++.|.++|++..|. ++++.+|.++|+||++|+..|+++++|+++||+|||||+++.
T Consensus 31 ~dp~l~---~~~~i~~~l~~~E~~~~p~~~y~~~~q~-~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~ 106 (306)
T 3g33_B 31 PDPRLL---GDQRVLQSLLRLEERYVPRASYFQCVQR-EIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCV 106 (306)
T ss_dssp ---------CHHHHHHHHHHHGGGGSCSSCCTTTSTT-TCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHC
T ss_pred CCCccc---chHHHHHHHHHHHHHhCCCcHHHhhcCc-cCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcC
Confidence 356554 8999999999999999999999987664 699999999999999999999999999999999999999999
Q ss_pred ccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhC
Q 021047 86 EIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFE 164 (318)
Q Consensus 86 ~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 164 (318)
.+.+.+ +||+|+|||+||+|+||..+| +.+|+...++.|++++|++||+.||++|+|+|++|||++||.+|+..++
T Consensus 107 ~v~~~~---lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~~~l~~l~ 183 (306)
T 3g33_B 107 PTRKAQ---LQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLAFILHRLS 183 (306)
T ss_dssp CCCGGG---HHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHHHHHHTSS
T ss_pred CCcHHH---HHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcC
Confidence 886555 999999999999999999987 7899877777899999999999999999999999999999999999987
Q ss_pred CCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCC--CCcchHHHhhhhcCCCcccHHHHHHHHH
Q 021047 165 PKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPL--QFPSFKTSILSSDYVNKEDLSKCYDTVQ 242 (318)
Q Consensus 165 ~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~--~~~~~~~~l~~~~~~~~~~l~~C~~~l~ 242 (318)
..... ...+...+.++++.++.++.|+.|+||+||+|||++|+..++.. +...|.+.|..++||++++|.+|++.|.
T Consensus 184 ~~~~~-~~~~~~~a~~~l~lsl~d~~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~tg~~~~~l~~c~~~I~ 262 (306)
T 3g33_B 184 LPRDR-QALVKKHAQTFLALCATDYTFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGITGTEVDCLRACQEQIE 262 (306)
T ss_dssp CCTTT-HHHHHHHHHHHHHHHHHCGGGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CChhH-HHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 65433 33566788899999999999999999999999999999988742 2245788999999999999999999999
Q ss_pred HHHHhcCcc
Q 021047 243 EMVEMDGCE 251 (318)
Q Consensus 243 ~~~~~~~~~ 251 (318)
+++......
T Consensus 263 ~l~~~~l~~ 271 (306)
T 3g33_B 263 AALRESLRE 271 (306)
T ss_dssp HHHHTC---
T ss_pred HHHHHHHHH
Confidence 999865543
No 2
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=8.1e-49 Score=356.39 Aligned_cols=237 Identities=14% Similarity=0.160 Sum_probs=205.9
Q ss_pred CCcCCCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 021047 2 EFDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRF 81 (318)
Q Consensus 2 ~~d~~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRf 81 (318)
+-+.+||..+.+ +||+ +|+++|.++.|.++|+...|. ++++.+|.++|+||++|+..|++.++|+++||+|+|||
T Consensus 8 ~~~~~dp~~~~~---~~i~-~l~~~E~~~~p~~~y~~~~q~-~i~~~~R~~lvdwl~ev~~~~~l~~etl~lAv~~~DRf 82 (257)
T 1g3n_C 8 PSGLLDPTLCED---RIFY-NILEIEPRFLTSDSVFGTFQQ-SLTSHMRKLLGTWMFSVCQEYNLEPNVVALALNLLDRL 82 (257)
T ss_dssp --------CHHH---HHHH-HHHHHGGGGCCCGGGHHHHTS-SCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ccCCCCCccccH---HHHH-HHHHHHHHhCCChhHHHhcCc-cCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 456778988754 8999 999999999999999876554 69999999999999999999999999999999999999
Q ss_pred hcCCccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHH
Q 021047 82 ISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFI 160 (318)
Q Consensus 82 ls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l 160 (318)
++...+++.+ +||+|+|||+||+|+||..+| +.+|+...++.|++++|.+||+.||++|+|++++|||++|+.+|+
T Consensus 83 ls~~~v~~~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~ 159 (257)
T 1g3n_C 83 LLIKQVSKEH---FQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQELIDQEKELLEKLAWRTEAVLATDVTSFLL 159 (257)
T ss_dssp TTTCCCCHHH---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHH
T ss_pred HccCCCCHHH---HHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHH
Confidence 9999987666 999999999999999999887 899977766789999999999999999999999999999999999
Q ss_pred HhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCC---CCcchHHHhhhhcCCCcccHHHH
Q 021047 161 SLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPL---QFPSFKTSILSSDYVNKEDLSKC 237 (318)
Q Consensus 161 ~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~---~~~~~~~~l~~~~~~~~~~l~~C 237 (318)
..++.+.+. ...+...+.++++.++.++.|++|+||+||+|||++|+..++.. ..+.|.+.|..++||++++|.+|
T Consensus 160 ~~~~~~~~~-~~~~~~~a~~~le~~l~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t~~~~~~l~~c 238 (257)
T 1g3n_C 160 LKLVGGSQH-LDFWHHEVNTLITKALVDPLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLASILGCDVSVLQAA 238 (257)
T ss_dssp HHHSCSSTT-HHHHHHHHHHHHHHHHTSTTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHHTCCHHHHHHH
T ss_pred HHcCCChhH-HHHHHHHHHHHHHHHHhCcchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHHCcCHHHHHHH
Confidence 999876433 33566778899999999999999999999999999999988632 12569999999999999999999
Q ss_pred HHHHHHHHHh
Q 021047 238 YDTVQEMVEM 247 (318)
Q Consensus 238 ~~~l~~~~~~ 247 (318)
++.|.+++..
T Consensus 239 ~~~i~~l~~~ 248 (257)
T 1g3n_C 239 VEQILTSVSD 248 (257)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999863
No 3
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=100.00 E-value=1.6e-48 Score=353.90 Aligned_cols=235 Identities=16% Similarity=0.178 Sum_probs=207.5
Q ss_pred CcCCCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHh
Q 021047 3 FDLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFI 82 (318)
Q Consensus 3 ~d~~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfl 82 (318)
-+.+||..+.+ +||+. |+++|.++.|.++|++..| .++++.+|.++||||++|+..|+++++|+|+||+|+|||+
T Consensus 10 ~~~~dp~l~~~---~~i~~-l~~~E~~~~p~~~y~~~~q-~~i~~~~R~~lvdwl~~v~~~~~l~~etl~lAv~~~DRfl 84 (254)
T 2f2c_A 10 RAKIDSTTMKD---PRVLN-NLKLRELLLPKFTSLWEIQ-TEVTVDNRTILLTWMHLLCESFELDKSVFPLSVSILDRYL 84 (254)
T ss_dssp BCCCCHHHHTC---HHHHH-HHHHHHTTSCCCSSTTTTC-SSCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHT
T ss_pred CCCCCcccccH---HHHHH-HHHHHHhhCCCchhhhhcC-ccCCHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHH
Confidence 45678887744 89999 9999999999999997655 4799999999999999999999999999999999999999
Q ss_pred cCCccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHH
Q 021047 83 SRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFIS 161 (318)
Q Consensus 83 s~~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~ 161 (318)
++..+++.+ +||+|+|||+||+|+||..+| +.||+...++.|++++|.+||+.||++|+|++++|||++|+.+|+.
T Consensus 85 s~~~v~~~~---lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~i~~mE~~IL~~L~~~l~~~tp~~fl~~~~~ 161 (254)
T 2f2c_A 85 CKKQGTKKT---LQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLELINQEKDILEALKWDTEAVLATDFLIPLCN 161 (254)
T ss_dssp TTSCCCTTT---HHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHHHHHHHHHHHHHTTTCCCCCCGGGSHHHHHH
T ss_pred ccCCcCHHH---ccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCcCCCCCHHHHHHHHHH
Confidence 999998888 999999999999999999887 8899877777899999999999999999999999999999999999
Q ss_pred hhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCC--CcchHHHhhhhcCCCcccHHHHHH
Q 021047 162 LFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQ--FPSFKTSILSSDYVNKEDLSKCYD 239 (318)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~--~~~~~~~l~~~~~~~~~~l~~C~~ 239 (318)
.++.+.+. ...+...+.++++.++.|+.|++|+||+||+|||++|+..++... +..|.+.|..++||++++|.+|++
T Consensus 162 ~~~~~~~~-~~~~~~~a~~ll~~~l~d~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~tg~~~~~l~~c~~ 240 (254)
T 2f2c_A 162 ALKIPEDL-WPQLYEAASTTICKALIQPNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSILNFSTNTVRTVKD 240 (254)
T ss_dssp HTTCCGGG-HHHHHHHHHHHHHHHTTSGGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HcCCChhh-HHHHHHHHHHHHHHHHcCcchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHCcCHHHHHHHHH
Confidence 99875433 335667788999999999999999999999999999998863221 122388999999999999999999
Q ss_pred HHHHHHH
Q 021047 240 TVQEMVE 246 (318)
Q Consensus 240 ~l~~~~~ 246 (318)
.|.+++.
T Consensus 241 ~i~~~~~ 247 (254)
T 2f2c_A 241 QVSEAFS 247 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 4
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=100.00 E-value=4.4e-49 Score=358.76 Aligned_cols=241 Identities=22% Similarity=0.287 Sum_probs=215.6
Q ss_pred chhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCC
Q 021047 12 FEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGK 91 (318)
Q Consensus 12 ~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~ 91 (318)
+.||++||+.+|++.|.++.|.++|++. ++++++.+|..+||||++|+..|+++++|+++||+|+|||++...+++.+
T Consensus 3 ~~eY~~di~~~l~~~E~~~~p~~~y~~~--q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v~~~~ 80 (260)
T 2cch_B 3 VPDYHEDIHTYLREMEVKCKPKVGYMKK--QPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGK 80 (260)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCTTGGGG--CSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_pred hHhHHHHHHHHHHHHHhhcCCCchhhhc--CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCCCHHH
Confidence 5679999999999999999999999985 45799999999999999999999999999999999999999999997766
Q ss_pred chhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchh
Q 021047 92 PWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPL 170 (318)
Q Consensus 92 ~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~ 170 (318)
+||+|+|||+||+|+||..+| +.||+...++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.+++
T Consensus 81 ---lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~-- 155 (260)
T 2cch_B 81 ---LQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANC-- 155 (260)
T ss_dssp ---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCH--
T ss_pred ---HhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChH--
Confidence 999999999999999999877 89998766668999999999999999999999999999999999999876542
Q ss_pred HHHHHHHHHHHHHHHccccc-ccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHHhcC
Q 021047 171 TQALKDRATDIIFRAHSEIK-LLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDG 249 (318)
Q Consensus 171 ~~~l~~~~~~ll~~~l~d~~-~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~~~~ 249 (318)
.+...+.++++.++.++. |++|+||.||+|||++|...++. +.|.+.+..++|+++++|.+|++.|.+++..
T Consensus 156 --~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~~~~~---~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~-- 228 (260)
T 2cch_B 156 --KVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVTG---QSWPESLIRKTGYTLESLKPCLMDLHQTYLK-- 228 (260)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHHHHHS---CCSCHHHHHHHCCCHHHHHHHHHHHHHHHHH--
T ss_pred --HHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHHHhCC---CcchHHHHHHhCcCHHHHHHHHHHHHHHHHh--
Confidence 355677888888888999 99999999999999999998864 4588899999999999999999999998863
Q ss_pred cccccCCCCCCCCccchhhcccccCC
Q 021047 250 CESILDTLSSSRTQFSVVDYKCTKSE 275 (318)
Q Consensus 250 ~~~~~~~~~~~~sp~~vl~~~~~s~~ 275 (318)
.+.++...+..||++.+
T Consensus 229 ---------~~~~~~~~i~~Ky~~~~ 245 (260)
T 2cch_B 229 ---------APQHAQQSIREKYKNSK 245 (260)
T ss_dssp ---------GGGSSCCHHHHHHTSGG
T ss_pred ---------cCCcchHHHHHHHCccc
Confidence 33446667777887654
No 5
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=1e-48 Score=354.05 Aligned_cols=228 Identities=15% Similarity=0.190 Sum_probs=195.8
Q ss_pred cCCCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhc
Q 021047 4 DLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFIS 83 (318)
Q Consensus 4 d~~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls 83 (318)
+..||..+ .+|++.+|+++|.++.|. ..| .++++.+|.++||||++|+..|++.++|+|+||+|+||||+
T Consensus 13 ~~~dp~l~----~d~i~~~l~~~E~~~~p~-----~~q-~~i~~~~R~~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs 82 (252)
T 1f5q_B 13 SLLNEEDC----RQMIYRSEREHDARMVGV-----NVD-QHFTSQYRKVLTTWMFCVCKDLRQDNNVFPLAVALLDELFL 82 (252)
T ss_dssp TTCCHHHH----HHHHHHHHHHHHHHHSSS-----SHH-HHHHCSHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred CcCCHHHh----HHHHHHHHHHHHHHhCcC-----ccC-CCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhc
Confidence 34455543 459999999999999882 223 36889999999999999999999999999999999999999
Q ss_pred CCccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHh
Q 021047 84 RQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISL 162 (318)
Q Consensus 84 ~~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~ 162 (318)
+..+++.+ +||+|+|||+||+|+||+.+| +.+|+...++.|++++|++||+.||++|+|+|+.|||++|+++|++.
T Consensus 83 ~~~v~~~~---lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~w~l~~pTp~~FL~~~l~~ 159 (252)
T 1f5q_B 83 STRIDREN---YQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTADKLLTLEVKSLDTLSWVADRCLSTDLICYILHI 159 (252)
T ss_dssp HSCCCGGG---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHH
T ss_pred CCCcCHHH---HHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99997766 999999999999999999987 78998777789999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHH
Q 021047 163 FEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQ 242 (318)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~ 242 (318)
++.+.+. ...+...+.++++.++.|+.|+.|+||+||+||+.++.....+ +...|.+.+..++||++++|.+|++.|.
T Consensus 160 ~~~~~~~-~~~~~~~a~~~l~~~l~d~~~l~~~PS~iAaaa~~~~l~~~~~-~~~~~~~~L~~~t~~~~~~l~~C~~~i~ 237 (252)
T 1f5q_B 160 MHAPRED-YLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTMNQKYD-YYENRIDGVCKSLYITKEELHQCCDLVD 237 (252)
T ss_dssp TTCCHHH-HHHHHHHHHHHHHHHHHCHHHHTSCHHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCcch-HHHHHHHHHHHHHHHHhchhhhccCHHHHHHHHHHHHhccCCC-chhhHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 8765322 2346678889999999999999999999999997666532211 1223577888999999999999999999
Q ss_pred HHHH
Q 021047 243 EMVE 246 (318)
Q Consensus 243 ~~~~ 246 (318)
+++.
T Consensus 238 ~~l~ 241 (252)
T 1f5q_B 238 IAIV 241 (252)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9885
No 6
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=100.00 E-value=5.6e-48 Score=353.07 Aligned_cols=241 Identities=21% Similarity=0.241 Sum_probs=213.7
Q ss_pred chhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCC
Q 021047 12 FEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGK 91 (318)
Q Consensus 12 ~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~ 91 (318)
+.||.+|||.+|+++|.++.|+++|++. + ++++.+|..+++||.+++..|+++++|+++||+|+|||++...+++.+
T Consensus 3 ~~eY~~di~~~l~~~E~~~~~~~~y~~~--q-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~v~~~~ 79 (269)
T 2b9r_A 3 SSEYVKDIYAYLRQLEAAQAVRPKYLLG--R-EVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNSVPKKM 79 (269)
T ss_dssp ----CCTTTTTHHHHHHTTCCCTTTTSS--S-SSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSCCCGGG
T ss_pred hHHHHHHHHHHHHHHHHhhCCCcccccC--C-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5679999999999999999999999984 3 799999999999999999999999999999999999999999998777
Q ss_pred chhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchh
Q 021047 92 PWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPL 170 (318)
Q Consensus 92 ~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~ 170 (318)
+||+|+|||+||+|+||..+| +.||+...++.|++++|.+||+.||++|+|++++|||++|+.+|+..++.+ .
T Consensus 80 ---lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~eI~~mE~~IL~~L~f~l~~~tp~~fl~~~~~~~~~~-~-- 153 (269)
T 2b9r_A 80 ---LQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKIGEVD-V-- 153 (269)
T ss_dssp ---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHHHHSSCCC-H--
T ss_pred ---hhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHhcCCC-H--
Confidence 999999999999999999887 899987777789999999999999999999999999999999999887653 1
Q ss_pred HHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHHhcCc
Q 021047 171 TQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEMDGC 250 (318)
Q Consensus 171 ~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~~~~~ 250 (318)
.+...+.++++.++.++.|++|+||.||+|||++|...++.. .|.+.+..++||++++|.+|++.|.+++...
T Consensus 154 --~~~~~a~~l~e~sl~~~~~~~~~Ps~iAaAai~lA~~~l~~~---~w~~~l~~~tg~~~~~l~~~~~~l~~~~~~~-- 226 (269)
T 2b9r_A 154 --EQHTLAKYLMELTMLDYDMVHFPPSQIAAGAFSLALKILDNG---EWTPTLQHYLSYTEESLLPVMQHLAKNVVMV-- 226 (269)
T ss_dssp --HHHHHHHHHHHHGGGCGGGSSSCTTHHHHHHHHHHHHHHTCC---CSCTTHHHHSCCCSSTTTTHHHHHHHHHHHT--
T ss_pred --HHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHHHHhCCC---CCCHHHHHHHCCCHHHHHHHHHHHHHHHHHh--
Confidence 355678899999999999999999999999999999998753 4888999999999999999999999987631
Q ss_pred ccccCCCCCCCCccchhhcccccCC
Q 021047 251 ESILDTLSSSRTQFSVVDYKCTKSE 275 (318)
Q Consensus 251 ~~~~~~~~~~~sp~~vl~~~~~s~~ 275 (318)
+.+.++..++..||++.+
T Consensus 227 -------~~~~~~~~ai~~Ky~~~~ 244 (269)
T 2b9r_A 227 -------NQGLTKHMTVKNKYATSK 244 (269)
T ss_dssp -------TTSCCSCCHHHHHTTSGG
T ss_pred -------cCCCcchHHHHHHhcchh
Confidence 223467788888887754
No 7
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=100.00 E-value=6.4e-47 Score=346.43 Aligned_cols=238 Identities=21% Similarity=0.366 Sum_probs=205.1
Q ss_pred cCCCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhc
Q 021047 4 DLENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFIS 83 (318)
Q Consensus 4 d~~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls 83 (318)
+..||..+ .+|++.+|+++|.++.|.++|+...|. ++++.+|.++|+||++++..|+++++|+++||+|+|||++
T Consensus 16 ~~~dp~~~----~~~i~~~l~~~E~~~~p~~~y~~~~q~-~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls 90 (271)
T 2w96_A 16 AYPDANLL----NDRVLRAMLKAEETCAPSVSYFKCVQK-EVLPSMRKIVATWMLEVCEEQKCEEEVFPLAMNYLDRFLS 90 (271)
T ss_dssp -------------CHHHHHHHHHHHHTCCCTTHHHHTCS-SCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHT
T ss_pred CCCCCccc----HHHHHHHHHHHHHHhCCCchHHHhcCC-cCCHHHHHHHHHHHHHHHHHHCCchhHHHHHHHHHHHhCC
Confidence 34556554 569999999999999999999987664 7999999999999999999999999999999999999999
Q ss_pred CCccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHh
Q 021047 84 RQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISL 162 (318)
Q Consensus 84 ~~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~ 162 (318)
...+++.+ +||+|+|||+||+|+||+.+| +.+|+...++.|++++|.+||+.||++|+|++++|||++|+.+|+..
T Consensus 91 ~~~v~~~~---lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~~~l~~~tp~~fl~~~~~~ 167 (271)
T 2w96_A 91 LEPVKKSR---LQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEELLQMELLLVNKLKWNLAAMTPHDFIEHFLSK 167 (271)
T ss_dssp TSCCCTTT---HHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHT
T ss_pred cCCcCHHH---HHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCCCccCCCCHHHHHHHHHHH
Confidence 99998888 999999999999999999776 78997776678999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCC------CCCcchHHHhhhhcCCCcccHHH
Q 021047 163 FEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFP------LQFPSFKTSILSSDYVNKEDLSK 236 (318)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~------~~~~~~~~~l~~~~~~~~~~l~~ 236 (318)
++... .....+...+.++++.++.|+.|++|+||+||+|||++|+..++. .+...|.+.|..++||++++|.+
T Consensus 168 l~~~~-~~~~~~~~~a~~~l~~~~~d~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~l~~~~~v~~~~l~~ 246 (271)
T 2w96_A 168 MPEAE-ENKQIIRKHAQTFVALCATDVKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRFLSRVIKCDPDCLRA 246 (271)
T ss_dssp SCCCH-HHHHHHHHHHHHHHHHHHTSTHHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHHHHHHHTSCHHHHHH
T ss_pred cCCCc-hHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHCcCHHHHHH
Confidence 87653 223345667888999999999999999999999999999987641 23345778899999999999999
Q ss_pred HHHHHHHHHHhcCc
Q 021047 237 CYDTVQEMVEMDGC 250 (318)
Q Consensus 237 C~~~l~~~~~~~~~ 250 (318)
|++.|.+++....+
T Consensus 247 c~~~i~~l~~~~~~ 260 (271)
T 2w96_A 247 CQEQIEALLESSLR 260 (271)
T ss_dssp HHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999875443
No 8
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=4.6e-45 Score=336.01 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=197.1
Q ss_pred CCCCCCchhchHHHHHHHHHHhhhhCCCCchhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcC-
Q 021047 6 ENPFTSFEEHQSDTLLDLFATESDHMPSHNFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISR- 84 (318)
Q Consensus 6 ~~~l~~~~eY~~di~~~L~~~E~~~~p~~~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~- 84 (318)
.+|..+ .||.+||+.+|+++|.++.|.++|++. ++++++.+|.++|+||++++..|++.++|+++||+|+|||++.
T Consensus 9 ~~p~l~-~~y~~~i~~~l~~~E~~~~~~~~y~~~--q~~i~~~~R~~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~ 85 (283)
T 1w98_B 9 PLPVLS-WANREEVWKIMLNKEKTYLRDQHFLEQ--HPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQ 85 (283)
T ss_dssp CSCCCS-SSCHHHHHHHHHHHTTTSCCCTTGGGG--CTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHC
T ss_pred CCcchh-hcCHHHHHHHHHHHHHHhCCCchhhcc--CCCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhC
Confidence 466666 459999999999999999999999985 4579999999999999999999999999999999999999998
Q ss_pred CccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhh
Q 021047 85 QEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLF 163 (318)
Q Consensus 85 ~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~ 163 (318)
..+.+. .+||+|+|||+||+|+||..+| +.+|+...++.|++++|.+||+.||++|+|++++|||++|+.+|+..+
T Consensus 86 ~~v~~~---~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~~~l~~~tp~~fL~~f~~~~ 162 (283)
T 1w98_B 86 ENVVKT---LLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLSPLTIVSWLNVYMQVA 162 (283)
T ss_dssp CCCCGG---GHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHH
T ss_pred CCCCHH---HHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcCCCCCHHHHHHHHHHHh
Confidence 467554 4999999999999999999887 799987766789999999999999999999999999999999999988
Q ss_pred CCCCch------hHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHH
Q 021047 164 EPKDPP------LTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKC 237 (318)
Q Consensus 164 ~~~~~~------~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C 237 (318)
+.++.. ........+.++++.++.|+.|++|+||+||+|||++|. |.+.+..++||++++|.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~llelsl~d~~~l~~~PS~iAaAai~la~----------~~~~l~~~tg~~~~~i~~c 232 (283)
T 1w98_B 163 YLNDLHEVLLPQYPQQIFIQIAELLDLCVLDVDCLEFPYGILAASALYHFS----------SSELMQKVSGYQWCDIENC 232 (283)
T ss_dssp TCCSSCCSSSCCSCHHHHHHHHHHHHHHHHSGGGGGSCHHHHHHHHHHHTS----------CHHHHHHHSCCCHHHHHHH
T ss_pred ccCchhhHHHHhhhHHHHHHHHHHHHHHHhhhhhhcCCHHHHHHHHHHHHH----------ChHHHHHHhCCCHHHHHHH
Confidence 754321 001222346678888999999999999999999999984 3577888999999999999
Q ss_pred HHHHHHHHH
Q 021047 238 YDTVQEMVE 246 (318)
Q Consensus 238 ~~~l~~~~~ 246 (318)
++.|..++.
T Consensus 233 ~~~l~~~~~ 241 (283)
T 1w98_B 233 VKWMVPFAM 241 (283)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998765
No 9
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=100.00 E-value=2e-35 Score=268.13 Aligned_cols=206 Identities=14% Similarity=0.186 Sum_probs=170.2
Q ss_pred chhhhhccCCCCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCC
Q 021047 35 NFVQCLKITDFYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHF 114 (318)
Q Consensus 35 ~y~~~~~~~~i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~ 114 (318)
++.+.++ .++...+|..+++||.+++..++++++|+++|++|||||+++..+.+.+ +|++|+|||+||+|+||..+
T Consensus 27 s~~~~~~-~~~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~eE~~~ 102 (258)
T 2i53_A 27 SQLEGLD-PATEARYRREGARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHSFKQFP---RYVTGACCLFLAGKVEETPK 102 (258)
T ss_dssp HHHTTCC-HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTCCC
T ss_pred hhhcCCC-HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCChhhcC---HHHHHHHHHHHHHccccccc
Confidence 3444333 2467799999999999999999999999999999999999999998877 99999999999999999755
Q ss_pred Chhhhhhhc-----cccc------CHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH
Q 021047 115 PLSKFQGDQ-----KLIF------DAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIF 183 (318)
Q Consensus 115 pl~dl~~~~-----~~~~------~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~ 183 (318)
++.||+... ...| ++++|.+||+.||++|+|++++|||+.|+.+|+..++.+. .....+...|.++++
T Consensus 103 ~l~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~~-~~~~~~~~~A~~l~~ 181 (258)
T 2i53_A 103 KCKDIIKTARSLLNDVQFGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFLLKYAKQLKGDK-NKIQKLVQMAWTFVN 181 (258)
T ss_dssp CHHHHHHHHHHHSCHHHHGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHTBCSCH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhchhhhhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHHHHHHHHhCCCc-chHHHHHHHHHHHHH
Confidence 588886421 1123 4899999999999999999999999999999999987653 222357788999999
Q ss_pred HHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHh-------hhhcCCCcccHHHHHHHHHHHHH
Q 021047 184 RAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSI-------LSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 184 ~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l-------~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
.++.+..++.|+||.||+|||++|...++.. .+.|.... ..++|+++++|.+|++.|.+++.
T Consensus 182 ~s~~~~~~l~~~Ps~IAaAai~lA~~~~~~~-~~~~~~~~~~~~W~~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 182 DSLCTTLSLQWEPEIIAVAVMYLAGRLCKFE-IQEWTSKPMYRRWWEQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp HHTTTTGGGTSCHHHHHHHHHHHHHHHHTCC-GGGGBSSCCSSCGGGGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHHcCCchhccChHHHHHHHHHHHHHHhCCC-CCccccCCCcccHHHHhccCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999887631 22222110 11369999999999999999875
No 10
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=100.00 E-value=7.5e-34 Score=257.71 Aligned_cols=192 Identities=16% Similarity=0.169 Sum_probs=162.1
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhc-
Q 021047 45 FYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQ- 123 (318)
Q Consensus 45 i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~- 123 (318)
....+|..+++||.+++..|+++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||..+++.|++...
T Consensus 26 ~e~~~R~~~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~~~~~~---~qlv~~acL~lA~K~EE~p~~l~d~~~~~~ 102 (257)
T 2ivx_A 26 KELSCRQQAANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHSFTKFN---KNIISSTALFLAAKVEEQARKLEHVIKVAH 102 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCChhhhC---HHHHHHHHHHHHhccccCCcCHHHHHHHHH
Confidence 34589999999999999999999999999999999999999998877 99999999999999999954488885321
Q ss_pred -------------ccccC--HHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcc-
Q 021047 124 -------------KLIFD--AQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHS- 187 (318)
Q Consensus 124 -------------~~~~~--~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~- 187 (318)
+..|+ +++|.+||+.||++|+|++++|||+.|+..|+..++.+ ..+...+.+++..++.
T Consensus 103 ~~~~~~~~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl~~~~~~l~~~-----~~~~~~A~~~~~~sl~~ 177 (257)
T 2ivx_A 103 ACLHPLEPLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDVVKCTQLVRAS-----KDLAQTSYFMATNSLHL 177 (257)
T ss_dssp HHHCTTSCCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHHHTTCC-----HHHHHHHHHHHHHHHHH
T ss_pred HHhccCCCCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHHHHHHHHhCCC-----cHHHHHHHHHHHhhhhc
Confidence 12344 99999999999999999999999999999999998754 2456778888888874
Q ss_pred cccccccCHHHHHHHHHHHHHhhhCCC-----CCcchHHHhhhhcCCCcccHHHHHHHHHHHHH
Q 021047 188 EIKLLEFRPSVIAASAVLLSSYELFPL-----QFPSFKTSILSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 188 d~~~~~~~PS~iAaAai~~a~~~l~~~-----~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
+..++.|+||.||+|||++|...++.. ..+.|...+ ..+|++++|.+|++.|.+++.
T Consensus 178 ~~~~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~--~~~~~~~~l~~~~~~i~~~~~ 239 (257)
T 2ivx_A 178 TTFCLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYV--DPTVTLELLDELTHEFLQILE 239 (257)
T ss_dssp CCGGGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGT--CSSCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHh--CCCCCHHHHHHHHHHHHHHHH
Confidence 455899999999999999999887621 112355433 358999999999999999886
No 11
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=8e-34 Score=261.30 Aligned_cols=188 Identities=15% Similarity=0.171 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhh---
Q 021047 47 VSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGD--- 122 (318)
Q Consensus 47 ~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~--- 122 (318)
..+|..+++||.+++..++++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||+.+| +.|++..
T Consensus 40 ~~~R~~~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~~~~di~~~~~~ 116 (285)
T 3rgf_B 40 WKLQIFFTNVIQALGEHLKLRQQVIATATVYFKRFYARYSLKSID---PVLMAPTCVFLASKVEEFGVVSNTRLIAAATS 116 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSCTTTSC---HHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCchhcC---HHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence 479999999999999999999999999999999999999998877 999999999999999999987 6777431
Q ss_pred -----------cccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccc
Q 021047 123 -----------QKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKL 191 (318)
Q Consensus 123 -----------~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~ 191 (318)
..+.+++++|++||+.||++|+|+++++||+.||..|+..++.+ ..+...|.+++..++.+..+
T Consensus 117 ~~k~~~~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l~~~-----~~~~~~A~~~l~~sl~t~~~ 191 (285)
T 3rgf_B 117 VLKTRFSYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDMGQE-----DMLLPLAWRIVNDTYRTDLC 191 (285)
T ss_dssp HHHHHCTTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHTCH-----HHHHHHHHHHHHHHTTSSHH
T ss_pred HHcccccccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHhCCC-----HHHHHHHHHHHHHHHccChh
Confidence 23568999999999999999999999999999999999998753 25678899999999999999
Q ss_pred cccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHHh
Q 021047 192 LEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEM 247 (318)
Q Consensus 192 ~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~~ 247 (318)
+.|+||.||+|||++|...++... +.|.. ..|+++++|.+|++.|.+++..
T Consensus 192 l~~~Ps~IAaAaiylA~~~~~~~~-~~W~~----~~~~~~~~l~~~~~~il~ly~~ 242 (285)
T 3rgf_B 192 LLYPPFMIALACLHVACVVQQKDA-RQWFA----ELSVDMEKILEIIRVILKLYEQ 242 (285)
T ss_dssp HHSCHHHHHHHHHHHHHHHTTCCC-HHHHH----TSCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHcCCCh-hhHHH----HHCCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876432 34544 3589999999999999999864
No 12
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.3e-34 Score=255.01 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCC-CCchhHHHHHHHHHHhhhhhccCCCChhhhhhhc-----
Q 021047 50 RQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQ-GKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQ----- 123 (318)
Q Consensus 50 R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~-~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~----- 123 (318)
|..+++||.+++..++++++|+++|++|||||++...+.+ .+ +|++|+|||+||+|+||..+++.|++...
T Consensus 28 R~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~~~~~~~---~~lv~~acL~lA~K~Ee~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 28 TIYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKNEEKGFS---LEALVATCIYLSCKVEECPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCSCCCCC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccC---HHHHHHHHHHHHhccccCcccHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999988 77 99999999999999999876788986543
Q ss_pred -ccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHH
Q 021047 124 -KLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAAS 202 (318)
Q Consensus 124 -~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaA 202 (318)
.+.+++++|.+||+.||++|+|++.++||+.||..|+..++.+ ..+...|.+++..++.+..++.|+||.||+|
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l~~~~~~~~~~-----~~~~~~A~~~l~~s~~~~~~l~~~Ps~IAaA 179 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSLEQAFHDGIIN-----QKQLEFAWSIVNDSYASSLCLMAHPHQLAYA 179 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHHHHHHHTTSSC-----HHHHHHHHHHHHHHTTTTGGGTSCHHHHHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHcCCchhccCHHHHHHH
Confidence 2468999999999999999999999999999999999977543 2456789999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHHh
Q 021047 203 AVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEM 247 (318)
Q Consensus 203 ai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~~ 247 (318)
||++|...++. ..+.|...+ .|+++++|.+|++.|.+++..
T Consensus 180 ai~lA~~~~~~-~~~~~~~~~---~~~~~~~i~~~~~~i~~ly~~ 220 (235)
T 1zp2_A 180 ALLISCCNDEN-TIPKLLDLI---KSTDAFKVILCVQRIISIYYF 220 (235)
T ss_dssp HHHHHHTSCTT-HHHHHHHHC---CHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcCC-CCCCCcchh---hcCCHHHHHHHHHHHHHHHhh
Confidence 99999987652 223344433 389999999999999998863
No 13
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=100.00 E-value=5.8e-33 Score=262.84 Aligned_cols=193 Identities=17% Similarity=0.161 Sum_probs=162.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhh--
Q 021047 45 FYVSLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGD-- 122 (318)
Q Consensus 45 i~~~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~-- 122 (318)
....+|..+++||.+|+..|+++++|+++||+|||||++...+.+.+ +|++|+||||||+|+||+.+++.||+..
T Consensus 33 ~E~~~R~~~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~sv~~~~---~qlva~acLfLA~K~EE~p~~l~d~v~v~~ 109 (358)
T 2pk2_A 33 KELSYRQQAANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQSFTRFP---GNSVAPAALFLAAKVEEQPKKLEHVIKVAH 109 (358)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccccc---HHHHHHHHHHHHHhhccCCCCHHHHHHHHH
Confidence 44689999999999999999999999999999999999999998877 9999999999999999995558888532
Q ss_pred --------------cccccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcc-
Q 021047 123 --------------QKLIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHS- 187 (318)
Q Consensus 123 --------------~~~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~- 187 (318)
..|.+.+++|++||+.||++|+|+|+++||+.||..|+..++.+ ..+...|.+++..++.
T Consensus 110 ~~~~~~~~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL~~~~~~l~~~-----~~l~~~A~~ll~~sl~~ 184 (358)
T 2pk2_A 110 TCLHPQESLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHVVKCTQLVRAS-----KDLAQTSYFMATNSLHL 184 (358)
T ss_dssp HHHCSSSCCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHHHHHHHHTTCC-----HHHHHHHHHHHHHHTTT
T ss_pred HHhccccccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhc
Confidence 11233489999999999999999999999999999999988754 2466788889988885
Q ss_pred cccccccCHHHHHHHHHHHHHhhhCCC-----CCcchHHHhhhhcCCCcccHHHHHHHHHHHHHh
Q 021047 188 EIKLLEFRPSVIAASAVLLSSYELFPL-----QFPSFKTSILSSDYVNKEDLSKCYDTVQEMVEM 247 (318)
Q Consensus 188 d~~~~~~~PS~iAaAai~~a~~~l~~~-----~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~~ 247 (318)
+..++.|+||.||+|||++|...++.. ....|...+ ..+|++++|.+|++.|.+++..
T Consensus 185 t~l~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~--~~~vt~~~l~~i~~~il~~y~~ 247 (358)
T 2pk2_A 185 TTFSLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYV--DATVTLELLDELTHEFLQILEK 247 (358)
T ss_dssp SCGGGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTS--CSSCCHHHHHHHHHHHHHHTTT
T ss_pred CcchhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHH--hccCCHHHHHHHHHHHHHHHHh
Confidence 445899999999999999999887521 112354433 2478999999999999998753
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=100.00 E-value=1.6e-31 Score=249.83 Aligned_cols=194 Identities=20% Similarity=0.269 Sum_probs=169.2
Q ss_pred HHHHHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcc
Q 021047 47 VSLRQETVSLILQIQFACN--FEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQK 124 (318)
Q Consensus 47 ~~~R~~~v~Wi~~v~~~~~--l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~ 124 (318)
..+|...++||.+++..|+ ++++|+++|++|||||++...+.+.+ +|++|+|||+||+|+||..+++.+|+....
T Consensus 54 ~~lr~~~~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s~~~~~---~~lva~acLfLA~K~EE~~~~l~d~v~~~~ 130 (323)
T 1jkw_A 54 MTLCKYYEKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNSVMEYH---PRIIMLTCAFLACKVDEFNVSSPQFVGNLR 130 (323)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSCTTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHGGGSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCChhhcC---HHHHHHHHHHHHHhhhcCCCCHHHHHHHhc
Confidence 3689999999999999999 99999999999999999999998777 999999999999999999877888864321
Q ss_pred -----cccCHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhC-----CCCchhHHHHHHHHHHHHHHHccccccccc
Q 021047 125 -----LIFDAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFE-----PKDPPLTQALKDRATDIIFRAHSEIKLLEF 194 (318)
Q Consensus 125 -----~~~~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~-----~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~ 194 (318)
..|+.++|++||+.||++|+|+++++||+.||..|+..+. ..+. ..+...|.+++..++.+..++.|
T Consensus 131 ~~p~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l~~~~~~~~~~---~~l~~~A~~~l~~sl~t~~~l~~ 207 (323)
T 1jkw_A 131 ESPLGQEKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDLKTRYPILENP---EILRKTADDFLNRIALTDAYLLY 207 (323)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHCTTCCCH---HHHHHHHHHHHHHHTTSTHHHHS
T ss_pred cChhhhHHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHHHhccHHHcC
Confidence 2467899999999999999999999999999999987652 2221 35678899999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhCCCCCcchHHHhhhh--cCCCcccHHHHHHHHHHHHHh
Q 021047 195 RPSVIAASAVLLSSYELFPLQFPSFKTSILSS--DYVNKEDLSKCYDTVQEMVEM 247 (318)
Q Consensus 195 ~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~--~~~~~~~l~~C~~~l~~~~~~ 247 (318)
+||.||+|||++|...++. ..+.|...+..+ .+++.++|.+|++.|..++..
T Consensus 208 ~Ps~IAaAai~lA~~~~~~-~~~~w~~~l~~~~~~~~~~~~l~~~~~~i~~l~~~ 261 (323)
T 1jkw_A 208 TPSQIALTAILSSASRAGI-TMESYLSESLMLKENRTCLSQLLDIMKSMRNLVKK 261 (323)
T ss_dssp CHHHHHHHHHHHHHHHHSC-CCTTHHHHHTTSCSSSCCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHcCC-ChHHHHHHHhccccccccHHHHHHHHHHHHHHHHc
Confidence 9999999999999998864 346688887665 788999999999999998874
No 15
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=99.95 E-value=2.6e-26 Score=201.55 Aligned_cols=186 Identities=16% Similarity=0.102 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhccccc
Q 021047 48 SLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIF 127 (318)
Q Consensus 48 ~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~ 127 (318)
+......++|.+++..+++++.|..+|+.|++||+....+.+.+ .+++|+|||+||+|+||....+.|+.... .+
T Consensus 3 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~~~~~~---~~~v~aaclylAcK~ee~p~~l~di~~~~--~~ 77 (207)
T 1c9b_A 3 RAMMNAFKEITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRA---NDAIASACLYIACRQEGVPRTFKEICAVS--RI 77 (207)
T ss_dssp GGHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTCSTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHTS--SS
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcCCCC---HHHHHHHHHHHHHHhcCCCCCHHHHHHHH--CC
Confidence 45678899999999999999999999999999999999988777 99999999999999999965588987665 38
Q ss_pred CHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHH
Q 021047 128 DAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLS 207 (318)
Q Consensus 128 ~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a 207 (318)
+.++|.++|+.||+.|+|++..++|+.|+..|...++.++ .+...|.+++..+..+.-+.+++|+.||+|||++|
T Consensus 78 ~~~~i~~~~~~ll~~L~~~l~~~~p~~~l~r~~~~l~l~~-----~~~~~A~~i~~~~~~~~l~~g~~P~~IAaAaiylA 152 (207)
T 1c9b_A 78 SKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLCLPK-----QVQMAATHIARKAVELDLVPGRSPISVAAAAIYMA 152 (207)
T ss_dssp CHHHHHHHHHHHHHHTTCCCCCCCTHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCcCcCCHHHHHHHHHHHCCCCH-----HHHHHHHHHHHHHHHcCccCCCChHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998752 45667888888888777889999999999999999
Q ss_pred HhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHH
Q 021047 208 SYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 208 ~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
....+ .+.|...+..++|+++..|.+|++.|.+.+.
T Consensus 153 ~~~~~---~~~~~~~i~~~~~v~~~tI~~~~~~l~~~l~ 188 (207)
T 1c9b_A 153 SQASA---EKRTQKEIGDIAGVADVTIRQSYRLIYPRAP 188 (207)
T ss_dssp HHTSS---SCCCHHHHHHHHTCCHHHHHHHHHHHGGGHH
T ss_pred HHHHC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 98775 3457888999999999999999999988654
No 16
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=99.90 E-value=2.2e-22 Score=175.46 Aligned_cols=186 Identities=14% Similarity=0.131 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhccccc
Q 021047 48 SLRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIF 127 (318)
Q Consensus 48 ~~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~ 127 (318)
+....+.++|.+++..+++++.+...|..|++||+....+.+.+ .+.+|++|+++|+|.||....+.|+.... .+
T Consensus 7 r~l~~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~~~gr~---~~~vaaAclylAcr~~~~p~~l~di~~~~--~v 81 (200)
T 1ais_B 7 RNLAFALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRS---IESVMAACVYAACRLLKVPRTLDEIADIA--RV 81 (200)
T ss_dssp -CHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTTTTTCC---HHHHHHHHHHHHHHHHTCCCCHHHHHHHT--TS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCCcCCCC---HHHHHHHHHHHHHHHcCCCCCHHHHHHHH--CC
Confidence 45678899999999999999999999999999999998887777 99999999999999999765588886655 48
Q ss_pred CHHHHHHHHHHHHHHcCccccc--cChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHH
Q 021047 128 DAQTIHRMELLILDALNWRMRS--ITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVL 205 (318)
Q Consensus 128 ~~~~i~~mE~~IL~~L~w~l~~--pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~ 205 (318)
+.++|.++++.|++.|+|++.+ ++|..|+..|...++.++ .+...|.+++..+..+..+.+++|+.||+|||+
T Consensus 82 ~~~~i~~~~~~l~~~L~~~~~~~~~~p~~~i~r~~~~L~l~~-----~v~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly 156 (200)
T 1ais_B 82 DKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSE-----KVRRRAIEILDEAYKRGLTSGKSPAGLVAAALY 156 (200)
T ss_dssp CHHHHHHHHHHHHHHTTCCTTTTCCCGGGGHHHHHHHHTCCH-----HHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccCCcCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHH
Confidence 8999999999999999999999 999999999999998752 456788899998888888899999999999999
Q ss_pred HHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHH
Q 021047 206 LSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 206 ~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
+|....+ .+.|.+.+..++|+++..|..|++.|.+.+.
T Consensus 157 ~A~~~~~---~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l~ 194 (200)
T 1ais_B 157 IASLLEG---EKRTQREVAEVARVTEVTVRNRYKELVEKLK 194 (200)
T ss_dssp HHHHHTT---CCCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhC---CCCCHHHHHHHhCCCHHHHHHHHHHHHHHcC
Confidence 9998775 3457899999999999999999999999764
No 17
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.2e-18 Score=161.15 Aligned_cols=184 Identities=10% Similarity=0.063 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccC
Q 021047 49 LRQETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFD 128 (318)
Q Consensus 49 ~R~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~ 128 (318)
....+...|..++..++++..+.-.|..||.|++....+...+ .+.++++||+||+|.|+....+.|+.... .++
T Consensus 125 ~l~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~~~kgr~---~~~vaaAclyiAcR~e~~prtl~ei~~~~--~v~ 199 (345)
T 3k7a_M 125 EVQAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEVARTFKEIQSLI--HVK 199 (345)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSCSSCCCC---SHHHHTTTTTTTSBTTBSSCCHHHHHHSS--SCC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcccCCc---HHHHHHHHHHHHHHHcCCCccHHHHHHHH--CCC
Confidence 3457788999999999999999999999999999998887777 99999999999999999865588886655 488
Q ss_pred HHHHHHHHHHHHHHcC------------ccccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCH
Q 021047 129 AQTIHRMELLILDALN------------WRMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRP 196 (318)
Q Consensus 129 ~~~i~~mE~~IL~~L~------------w~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~P 196 (318)
.++|.++++.|++.|+ +.+.+++|..||..|...++... .+...|.+++..+..+.-+.+++|
T Consensus 200 ~keIgr~~~~l~~~L~~~~~~~~~~~~~~~~~~~~p~~~i~Rf~~~L~l~~-----~v~~~A~~i~~~~~~~~l~~Gr~P 274 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSP 274 (345)
T ss_dssp SHHHHHHHHHHHHHHTCC--------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHhhhhccccccccccccCCCCHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhchhcCCCH
Confidence 9999999999999999 99999999999999999998752 456788889988888888889999
Q ss_pred HHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHH
Q 021047 197 SVIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMV 245 (318)
Q Consensus 197 S~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~ 245 (318)
+.||+||||+|...++. +.|...+...+|+++..|+.+++.|.+..
T Consensus 275 ~~IAaAaIylAa~~~~~---~~t~~eIa~~~~Vse~TIr~~ykel~~~~ 320 (345)
T 3k7a_M 275 ITIAVVSIYLNILLFQI---PITAAKVGQTLQVTEGTIKSGYKILYEHR 320 (345)
T ss_dssp -------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHCC---CCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999987652 34678888999999999999999998864
No 18
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=99.38 E-value=1.2e-12 Score=122.93 Aligned_cols=183 Identities=10% Similarity=0.066 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHH
Q 021047 51 QETVSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQ 130 (318)
Q Consensus 51 ~~~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~ 130 (318)
..+...|.+++..++++..+.-.|..++.+++....+.... ...++++|+++|+|.++....+.|+.... ..+++
T Consensus 127 ~~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~~~rGrs---~e~vaAAclYiACR~~~~prtl~eI~~~~--~v~~k 201 (345)
T 4bbr_M 127 QAAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEKTLKGKS---MESIMAASILIGCRRAEVARTFKEIQSLI--HVKTK 201 (345)
T ss_dssp THHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTTTTCC---HHHHHHHHHHHHHHHTCCBCCHHHHHHHH--TCCTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccCCC---HHHHHHHHHHHHHHhcCCCccHHHHHHHh--CCCHH
Confidence 55667888999999999999999999999999988777666 89999999999999999876688886554 36789
Q ss_pred HHHHHHHHHHHHcCcc------------ccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHH
Q 021047 131 TIHRMELLILDALNWR------------MRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSV 198 (318)
Q Consensus 131 ~i~~mE~~IL~~L~w~------------l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~ 198 (318)
+|.+..+.|.+.|+.. +.+..|..|+..|...++... .+...|.+++..+..+.-..+.+|+.
T Consensus 202 eigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~-----~v~~~A~~i~~~~~~~~i~~GR~P~~ 276 (345)
T 4bbr_M 202 EFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPM-----QVTTSAEYTAKKCKEIKEIAGKSPIT 276 (345)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcH-----HHHHHHHHHHHHHHhcccccCCChHH
Confidence 9999999999999974 778899999999999998753 34567778887776665567899999
Q ss_pred HHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHH
Q 021047 199 IAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 199 iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
||+||||+|....+.. .-...+....|+++.-|+..++.|.+...
T Consensus 277 IAAAaIylAa~l~g~~---~t~~eIa~v~~Vse~TIr~rykel~~~~~ 321 (345)
T 4bbr_M 277 IAVVSIYLNILLFQIP---ITAAKVGQTLQVTEGTIKSGYKILYEHRD 321 (345)
T ss_dssp ------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9999999999876532 23567888899999999999998887543
No 19
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=98.36 E-value=3.4e-06 Score=76.41 Aligned_cols=108 Identities=10% Similarity=0.121 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCc-cCCCCchhHHHHHHHHHHhhhhhccCCCC-hhhhhhhcccccCHH
Q 021047 53 TVSLILQIQFACNFEPFISYLAVTYLDRFISRQE-IPQGKPWVLRLLAVSCISLAAKMKNTHFP-LSKFQGDQKLIFDAQ 130 (318)
Q Consensus 53 ~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~-v~~~~~~~lqL~avacL~iAaK~eE~~~p-l~dl~~~~~~~~~~~ 130 (318)
+-+|+..+...-++++.++..|+.|+||+..... +.. .++...-+-++||.+|+|+-+.... -..+...+ .++.+
T Consensus 77 I~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~~~l-~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVg--Gisl~ 153 (293)
T 2pmi_B 77 IFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPDFTL-NSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVG--GVRCH 153 (293)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTTCCC-STTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHH--TSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCCCcc-CCchHHHHHHHHHHHHHHhccccccChhHhhhcc--CcCHH
Confidence 5578899999999999999999999999998543 322 2455888889999999999776654 33443333 58999
Q ss_pred HHHHHHHHHHHHcCccccccChHHHHHHHHHhhC
Q 021047 131 TIHRMELLILDALNWRMRSITPFSFLCFFISLFE 164 (318)
Q Consensus 131 ~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 164 (318)
++..||+..|..|+|+|.+. +..|..+++...+
T Consensus 154 ELN~LE~eFL~lLdf~L~V~-~ee~~~cy~E~~~ 186 (293)
T 2pmi_B 154 ELNILENDFLKRVNYRIIPR-DHNITLCSIEQKQ 186 (293)
T ss_dssp HHHHHHHHHHHTTTTCCSCC-TTHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHcCCceeeC-HHHHHHHHHHHhh
Confidence 99999999999999998654 6677777766543
No 20
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=96.92 E-value=0.0055 Score=52.25 Aligned_cols=89 Identities=9% Similarity=0.046 Sum_probs=74.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHHHHHH
Q 021047 55 SLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHR 134 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~~i~~ 134 (318)
++|...+..++++.++.-.|..++.+.....-+.... ...+|++|+++|+++.....+..++.... ..+..+|.+
T Consensus 110 ~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~~~~gr~---P~~iAaAaly~A~~~~~~~~t~~ei~~~~--~vs~~ti~~ 184 (200)
T 1ais_B 110 DYVNKFADELGLSEKVRRRAIEILDEAYKRGLTSGKS---PAGLVAAALYIASLLEGEKRTQREVAEVA--RVTEVTVRN 184 (200)
T ss_dssp GGHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCCTTSC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHH--TCCHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcccCCC---HHHHHHHHHHHHHHHhCCCCCHHHHHHHh--CCCHHHHHH
Confidence 5677888999999999999999999999876665556 88999999999999988766677876555 468899999
Q ss_pred HHHHHHHHcCcccc
Q 021047 135 MELLILDALNWRMR 148 (318)
Q Consensus 135 mE~~IL~~L~w~l~ 148 (318)
.=..+.+.|+-.+.
T Consensus 185 ~~~~l~~~l~~~~~ 198 (200)
T 1ais_B 185 RYKELVEKLKIKVP 198 (200)
T ss_dssp HHHHHHHHHTCCCC
T ss_pred HHHHHHHHcCCCCC
Confidence 99999999986553
No 21
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=95.62 E-value=0.061 Score=45.89 Aligned_cols=86 Identities=10% Similarity=0.016 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHHHHH
Q 021047 54 VSLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIH 133 (318)
Q Consensus 54 v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~~i~ 133 (318)
.++|.+.+..++++.++.-+|..++..-+...-..... ...+|++|+++|+++.+...+..++.... ..+..+|.
T Consensus 103 ~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~l~~g~~---P~~IAaAaiylA~~~~~~~~~~~~i~~~~--~v~~~tI~ 177 (207)
T 1c9b_A 103 GDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRS---PISVAAAAIYMASQASAEKRTQKEIGDIA--GVADVTIR 177 (207)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTCSTTCC---HHHHHHHHHHHHHHTSSSCCCHHHHHHHH--TCCHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCccCCCC---hHHHHHHHHHHHHHHHCCCCCHHHHHHHh--CCCHHHHH
Confidence 35677888899999999999999999888755454555 88999999999999988766667764443 47788888
Q ss_pred HHHHHHHHHcC
Q 021047 134 RMELLILDALN 144 (318)
Q Consensus 134 ~mE~~IL~~L~ 144 (318)
+.=+.++..++
T Consensus 178 ~~~~~l~~~l~ 188 (207)
T 1c9b_A 178 QSYRLIYPRAP 188 (207)
T ss_dssp HHHHHHGGGHH
T ss_pred HHHHHHHHHHH
Confidence 87777777665
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=93.41 E-value=0.48 Score=43.85 Aligned_cols=91 Identities=16% Similarity=0.152 Sum_probs=70.9
Q ss_pred cccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhc
Q 021047 148 RSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSD 227 (318)
Q Consensus 148 ~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~ 227 (318)
+.-..+..|..+...++..+ .+...|..+...+...-.+-+.+...+||||||+|.+..+ .|.-...+..++
T Consensus 125 ~L~~a~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYiACR~~~---~prtl~eI~~~~ 196 (345)
T 4bbr_M 125 EVQAAFAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLI 196 (345)
T ss_dssp STTHHHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHHHHHHTC---CBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHhcC---CCccHHHHHHHh
Confidence 34667888888888888762 5667788888877654445568889999999999998764 344567788889
Q ss_pred CCCcccHHHHHHHHHHHHH
Q 021047 228 YVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 228 ~~~~~~l~~C~~~l~~~~~ 246 (318)
++++.+|..+++.|.+.+.
T Consensus 197 ~v~~keigr~~k~l~~~L~ 215 (345)
T 4bbr_M 197 HVKTKEFGKTLNIMKNILR 215 (345)
T ss_dssp TCCTTHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 9999999999999988654
No 23
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=91.65 E-value=0.21 Score=46.28 Aligned_cols=88 Identities=17% Similarity=0.167 Sum_probs=69.1
Q ss_pred ChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCC
Q 021047 151 TPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSDYVN 230 (318)
Q Consensus 151 Tp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~ 230 (318)
..+.+|+.+...++... .+...|..+...+.....+-+.+.-.||+||||+|.+..+ .|.-...+..+++++
T Consensus 128 ~a~~~I~~~~~~L~Lp~-----~v~d~A~~lyk~~~~~~~~kgr~~~~vaaAclyiAcR~e~---~prtl~ei~~~~~v~ 199 (345)
T 3k7a_M 128 AAFAKITMLCDAAELPK-----IVKDCAKEAYKLCHDEKTLKGKSMESIMAASILIGCRRAE---VARTFKEIQSLIHVK 199 (345)
T ss_dssp HHHHHHHHHHHHTTCCH-----HHHTHHHHHHHHHSSSCSSCCCCSHHHHTTTTTTTSBTTB---SSCCHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHcC---CCccHHHHHHHHCCC
Confidence 55678888888887652 4567777887777655556678899999999999988654 344567788889999
Q ss_pred cccHHHHHHHHHHHHH
Q 021047 231 KEDLSKCYDTVQEMVE 246 (318)
Q Consensus 231 ~~~l~~C~~~l~~~~~ 246 (318)
+.+|..|++.|.+.+.
T Consensus 200 ~keIgr~~~~l~~~L~ 215 (345)
T 3k7a_M 200 TKEFGKTLNIMKNILR 215 (345)
T ss_dssp SHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998765
No 24
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=86.92 E-value=2.7 Score=36.23 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=58.6
Q ss_pred hHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccc-cCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhc---
Q 021047 152 PFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLE-FRPSVIAASAVLLSSYELFPLQFPSFKTSILSSD--- 227 (318)
Q Consensus 152 p~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~-~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~--- 227 (318)
..++|......++... .....|..+++..+....+.. +.|-.+|+|||++|.+.-+. +.-...+..++
T Consensus 31 ~~~~i~~v~~~l~L~~-----~t~~~A~~~~~Rf~~~~~~~~~~~~~lv~~acL~lA~K~Ee~---~~~l~d~~~~~~~~ 102 (235)
T 1zp2_A 31 QWKVVQTFGDRLRLRQ-----RVLATAIVLLRRYMLKKNEEKGFSLEALVATCIYLSCKVEEC---PVHIRTICNEANDL 102 (235)
T ss_dssp HHHHHHHHHHHTTCCH-----HHHHHHHHHHHHHHHHCCSCCCCCHHHHHHHHHHHHHHHTTC---CCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHhcccccccCHHHHHHHHHHHHhccccC---cccHHHHHHHHHHH
Confidence 3567777777777652 233455566665555566778 99999999999999986542 21223333332
Q ss_pred -----CCCcccHHHHHHHHHHHHH
Q 021047 228 -----YVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 228 -----~~~~~~l~~C~~~l~~~~~ 246 (318)
.++.++|..+-..|.+.+.
T Consensus 103 ~~~~~~~~~~~I~~~E~~iL~~L~ 126 (235)
T 1zp2_A 103 WSLKVKLSRSNISEIEFEIISVLD 126 (235)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHTT
T ss_pred ccchhhccHHHHHHHHHHHHHHCC
Confidence 5788999999888887654
No 25
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=85.99 E-value=6.2 Score=34.30 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhc-CCccCCCCchhHHHHHHHHHHhhhhhccCCCCh-hh---hhhhcccccCH
Q 021047 55 SLILQIQFACNFEPFISYLAVTYLDRFIS-RQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPL-SK---FQGDQKLIFDA 129 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t~~lAv~~lDRfls-~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl-~d---l~~~~~~~~~~ 129 (318)
+++......++.+.++..+|.+++..-+. ..-.-... ...+|++|+++|+++-+...|. .+ .-..-...++.
T Consensus 148 ~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~~~ 224 (257)
T 2ivx_A 148 TDVVKCTQLVRASKDLAQTSYFMATNSLHLTTFCLQYK---PTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTVTL 224 (257)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCGGGTSC---HHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSCCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHhhhhcccHHHcCC---HHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCCCH
Confidence 45666677788888888888888755442 22223334 7899999999999987655442 11 11100113688
Q ss_pred HHHHHHHHHHHHHc
Q 021047 130 QTIHRMELLILDAL 143 (318)
Q Consensus 130 ~~i~~mE~~IL~~L 143 (318)
++|...-..|+..+
T Consensus 225 ~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 225 ELLDELTHEFLQIL 238 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 89988888888754
No 26
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei}
Probab=85.26 E-value=16 Score=30.95 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHhcCCc---cCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCH
Q 021047 53 TVSLILQIQFACNFEPFISYLAVTYLDRFISRQE---IPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDA 129 (318)
Q Consensus 53 ~v~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~---v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~ 129 (318)
+.+-|..++..-+++..++--||-+--.|.-... ..-++ -|-+|++|+.||+---....|+.++..... ....
T Consensus 15 M~nclr~L~kKs~~~eaVL~~AieLar~fvg~rR~rgqRvE~---q~dVAAAc~miAae~~~~PiplaE~r~lD~-sL~D 90 (260)
T 3h4c_A 15 MLNCMRGLHKKAVLPEPVLDRGIELARAFVGGRRARGQRVER---QPDVAAACLMIAAEEAQQPLPLAEVRCLDS-SLGD 90 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCC---HHHHHHHHHHHHHHHTTCCCCHHHHHHHCT-TCCC
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHhhhhhhhcccccc---cHHHHHHHHHHHHHHcCCCccHHHHHHHhh-hhhH
Confidence 3455688999999999999999999998886544 22344 889999999999965445556666643321 2223
Q ss_pred HHHHHHHHHHHHHcCc-----cccccChHHHHHHHHHhhCCCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHH
Q 021047 130 QTIHRMELLILDALNW-----RMRSITPFSFLCFFISLFEPKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAV 204 (318)
Q Consensus 130 ~~i~~mE~~IL~~L~w-----~l~~pTp~~Fl~~~l~~~~~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai 204 (318)
-+.++. .|+..|+- +|...-.-..|.+|+..++..-. ...-.|..++...-....+..+---.--.-|+
T Consensus 91 velrr~--Eiv~~l~l~e~e~rl~~~~~~NLl~~Yv~kL~Lq~s----~Y~p~C~rL~~ai~~ve~LA~~~~~drii~Al 164 (260)
T 3h4c_A 91 VELRRA--DIVRELHLEDSERRLRDTFADNLLVKYILKLGLQVS----LYLPHCKRLLTALGRVEALAGLTVADRVTTAL 164 (260)
T ss_dssp HHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHHHTCGGGTTCCHHHHHHHHH
T ss_pred HHHHHH--HHHHHccCCHHHHHHHHHhhhhHHHHHHHHhccchh----hhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 334443 45666653 23333344556677777776521 12233444444322333344454444445567
Q ss_pred HHHHhh
Q 021047 205 LLSSYE 210 (318)
Q Consensus 205 ~~a~~~ 210 (318)
++|+-.
T Consensus 165 LLArT~ 170 (260)
T 3h4c_A 165 LLARTA 170 (260)
T ss_dssp HHHHHS
T ss_pred HHHhcc
Confidence 777754
No 27
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=84.10 E-value=5.5 Score=34.58 Aligned_cols=87 Identities=14% Similarity=0.094 Sum_probs=60.2
Q ss_pred HHHHHHHHHcCCCh----hHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChh--hhhhh---cc-
Q 021047 55 SLILQIQFACNFEP----FISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLS--KFQGD---QK- 124 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~----~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~--dl~~~---~~- 124 (318)
+++......++.+. ++..+|.++++.-+.....-... ...+|++|+++|+++-+...|-. ..... ..
T Consensus 153 ~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~~~l~~~---Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~~~~ 229 (258)
T 2i53_A 153 QFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTTLSLQWE---PEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWWEQF 229 (258)
T ss_dssp HHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTTGGGTSC---HHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGGGGT
T ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCCchhccC---hHHHHHHHHHHHHHHhCCCCCccccCCCcccHHHHh
Confidence 46667777777776 57778888888877665555555 78999999999999876543311 00000 01
Q ss_pred -cccCHHHHHHHHHHHHHHcC
Q 021047 125 -LIFDAQTIHRMELLILDALN 144 (318)
Q Consensus 125 -~~~~~~~i~~mE~~IL~~L~ 144 (318)
-.++.++|...-..|++..+
T Consensus 230 ~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 230 VQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp SSSCCHHHHHHHHHHHHTTTS
T ss_pred ccCCCHHHHHHHHHHHHHHHh
Confidence 14789999998888887654
No 28
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=80.97 E-value=3.8 Score=36.50 Aligned_cols=82 Identities=16% Similarity=0.156 Sum_probs=54.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHHHHHH
Q 021047 55 SLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTIHR 134 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~~i~~ 134 (318)
++|......++.+.++..+|.+++..-+.....-... ...+|++|+++|+++.....+ .... ...++.++|..
T Consensus 159 ~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~~~l~~~---Ps~IAaAaiylA~~~~~~~~~--~W~~--~~~~~~~~l~~ 231 (285)
T 3rgf_B 159 RPLLQYVQDMGQEDMLLPLAWRIVNDTYRTDLCLLYP---PFMIALACLHVACVVQQKDAR--QWFA--ELSVDMEKILE 231 (285)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSHHHHSC---HHHHHHHHHHHHHHHTTCCCH--HHHH--TSCSCHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHccChhhccC---HHHHHHHHHHHHHHHcCCChh--hHHH--HHCCCHHHHHH
Confidence 3566666777777888888888888766544433334 788999999999998665432 1111 12467777777
Q ss_pred HHHHHHHHc
Q 021047 135 MELLILDAL 143 (318)
Q Consensus 135 mE~~IL~~L 143 (318)
.-..|++..
T Consensus 232 ~~~~il~ly 240 (285)
T 3rgf_B 232 IIRVILKLY 240 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766666643
No 29
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=80.55 E-value=4.9 Score=37.15 Aligned_cols=86 Identities=14% Similarity=0.113 Sum_probs=55.9
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcCCc-cCCCCchhHHHHHHHHHHhhhhhccCCCChh----hhhhhcccccCH
Q 021047 55 SLILQIQFACNFEPFISYLAVTYLDRFISRQE-IPQGKPWVLRLLAVSCISLAAKMKNTHFPLS----KFQGDQKLIFDA 129 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~-v~~~~~~~lqL~avacL~iAaK~eE~~~pl~----dl~~~~~~~~~~ 129 (318)
++|......++.+.++..+|.+++..-+.... .-... ...+|++|+++|+++-....|.. .....-...++.
T Consensus 155 ~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t~l~l~y~---Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt~ 231 (358)
T 2pk2_A 155 THVVKCTQLVRASKDLAQTSYFMATNSLHLTTFSLQYT---PPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVTL 231 (358)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSCGGGTSC---HHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhccC---HHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCCH
Confidence 45666777788888888899888866553222 23334 78999999999999876554421 010000113677
Q ss_pred HHHHHHHHHHHHHc
Q 021047 130 QTIHRMELLILDAL 143 (318)
Q Consensus 130 ~~i~~mE~~IL~~L 143 (318)
++|...-..|+..+
T Consensus 232 ~~l~~i~~~il~~y 245 (358)
T 2pk2_A 232 ELLDELTHEFLQIL 245 (358)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHH
Confidence 88888777777544
No 30
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=74.95 E-value=4.5 Score=35.64 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCC
Q 021047 55 SLILQIQFACNFEPFISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTH 113 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~ 113 (318)
+|+...+...+.+.++..+|-.+++.-+....+.... ...+|++|+++|.+.-+..
T Consensus 140 ~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~~~~~~~---Ps~iAaAai~lA~~~l~~~ 195 (269)
T 2b9r_A 140 HFLRRASKIGEVDVEQHTLAKYLMELTMLDYDMVHFP---PSQIAAGAFSLALKILDNG 195 (269)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHHHHHHGGGCGGGSSSC---TTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhhhcCC---HHHHHHHHHHHHHHHhCCC
Confidence 4566666667777777778888888777665554445 6789999999999986654
No 31
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=74.71 E-value=9.2 Score=33.33 Aligned_cols=83 Identities=7% Similarity=-0.045 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCCh-hHHHHHHHHHHHHhcCCc-cCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHHHH
Q 021047 55 SLILQIQFACNFEP-FISYLAVTYLDRFISRQE-IPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQTI 132 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~-~t~~lAv~~lDRfls~~~-v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~~i 132 (318)
+|+......++.+. .+..+|-.+++.-+.... +.... ...+|++|+++|.+.-+...-...+.... .++.++|
T Consensus 141 ~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~---Ps~iAaAai~lA~~~~~~~~w~~~l~~~~--g~~~~~i 215 (260)
T 2cch_B 141 QFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYL---PSVIAGAAFHLALYTVTGQSWPESLIRKT--GYTLESL 215 (260)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSC---HHHHHHHHHHHHHHHHHSCCSCHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCC---HHHHHHHHHHHHHHHhCCCcchHHHHHHh--CcCHHHH
Confidence 45555555566554 556667666666543333 33334 67899999999998765421123443333 4778888
Q ss_pred HHHHHHHHHH
Q 021047 133 HRMELLILDA 142 (318)
Q Consensus 133 ~~mE~~IL~~ 142 (318)
...=..|...
T Consensus 216 ~~~~~~l~~~ 225 (260)
T 2cch_B 216 KPCLMDLHQT 225 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666554
No 32
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=74.25 E-value=16 Score=31.58 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCChhHH----HHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCC-CC----hhhhhhhcccc
Q 021047 56 LILQIQFACNFEPFIS----YLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTH-FP----LSKFQGDQKLI 126 (318)
Q Consensus 56 Wi~~v~~~~~l~~~t~----~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~-~p----l~dl~~~~~~~ 126 (318)
|+......++.+.++. .+|..+++.-+....+.... ...+|++|+++|.+..... .+ ...+.... .
T Consensus 155 fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~d~~~~~~~---PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~t--g 229 (254)
T 2f2c_A 155 FLIPLCNALKIPEDLWPQLYEAASTTICKALIQPNIALLS---PGLICAGGLLTTIETDNTNCRPWTCYLEDLSSIL--N 229 (254)
T ss_dssp SHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSGGGTTSC---HHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHHH--T
T ss_pred HHHHHHHHcCCChhhHHHHHHHHHHHHHHHHcCcchhccC---HHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH--C
Confidence 4445555666666542 34667777665555554555 7899999999999985222 12 23344333 4
Q ss_pred cCHHHHHHHHHHHHHH
Q 021047 127 FDAQTIHRMELLILDA 142 (318)
Q Consensus 127 ~~~~~i~~mE~~IL~~ 142 (318)
++.++|...=..|.+.
T Consensus 230 ~~~~~l~~c~~~i~~~ 245 (254)
T 2f2c_A 230 FSTNTVRTVKDQVSEA 245 (254)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7788888766666554
No 33
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=73.84 E-value=15 Score=31.80 Aligned_cols=83 Identities=6% Similarity=-0.077 Sum_probs=49.9
Q ss_pred HHHHHHHHHcCCChhH----HHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCC-----Ch-hhhhhhcc
Q 021047 55 SLILQIQFACNFEPFI----SYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHF-----PL-SKFQGDQK 124 (318)
Q Consensus 55 ~Wi~~v~~~~~l~~~t----~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~-----pl-~dl~~~~~ 124 (318)
+|+......++.+.++ ..+|-.+++.-+....+.... ...+|++|+++|.+.-+..+ +. ..+....
T Consensus 153 ~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~d~~~~~~~---PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~~t- 228 (257)
T 1g3n_C 153 DVTSFLLLKLVGGSQHLDFWHHEVNTLITKALVDPLTGSLP---ASIISAAGCALLVPANVIPQDTHSGGVVPQLASIL- 228 (257)
T ss_dssp HHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHTSTTGGGSC---HHHHHHHHHHHHCCGGGSCC-----CHHHHHHHHH-
T ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHhCcchhCcC---HHHHHHHHHHHHHHHhCCCcccchhhHHHHHHHHH-
Confidence 4555555555665544 234666666555544444444 77899999999998876431 22 3343333
Q ss_pred cccCHHHHHHHHHHHHHH
Q 021047 125 LIFDAQTIHRMELLILDA 142 (318)
Q Consensus 125 ~~~~~~~i~~mE~~IL~~ 142 (318)
.++.++|...=..|.+.
T Consensus 229 -~~~~~~l~~c~~~i~~l 245 (257)
T 1g3n_C 229 -GCDVSVLQAAVEQILTS 245 (257)
T ss_dssp -TCCHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHHHHH
Confidence 47788887765555554
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=67.03 E-value=35 Score=29.72 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhc--CCCcccHHHHHHHHHHHHH
Q 021047 178 ATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSD--YVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 178 ~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~--~~~~~~l~~C~~~l~~~~~ 246 (318)
+..+++..+....+....+-.+|+||+++|.+.-+. .|--.+.+..++ .|++++|..+-..|.+.+.
T Consensus 81 Av~~lDRfls~~~v~~~~lqlv~~acL~iAsK~EE~--~p~~~~~~~~~~~~~~~~~eI~~mE~~IL~~L~ 149 (271)
T 2w96_A 81 AMNYLDRFLSLEPVKKSRLQLLGATCMFVASKMKET--IPLTAEKLCIYTDNSIRPEELLQMELLLVNKLK 149 (271)
T ss_dssp HHHHHHHHHTTSCCCTTTHHHHHHHHHHHHHHHHCS--SCCCHHHHHHHTTTSSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCcCCcCHHHHHHHHHHHHHHHHHHhhc--CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHCC
Confidence 334444444444455677889999999999987653 122234444444 4899999999888888664
No 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=66.89 E-value=38 Score=30.48 Aligned_cols=54 Identities=19% Similarity=0.172 Sum_probs=37.7
Q ss_pred HHHHHHHHhhC--CCCchhHHHHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhhhC
Q 021047 154 SFLCFFISLFE--PKDPPLTQALKDRATDIIFRAHSEIKLLEFRPSVIAASAVLLSSYELF 212 (318)
Q Consensus 154 ~Fl~~~l~~~~--~~~~~~~~~l~~~~~~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~ 212 (318)
.+|..+...++ ... .....|..+++..+....+..+.|-.||+|||++|.+.-+
T Consensus 62 ~~I~ev~~~l~~~Lp~-----~t~~tA~~~~~RF~~~~s~~~~~~~lva~acLfLA~K~EE 117 (323)
T 1jkw_A 62 KRLLEFCSVFKPAMPR-----SVVGTACMYFKRFYLNNSVMEYHPRIIMLTCAFLACKVDE 117 (323)
T ss_dssp HHHHHHHHHCTTTCCH-----HHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCCH-----HHHHHHHHHHHHHhhhCChhhcCHHHHHHHHHHHHHhhhc
Confidence 34555555555 331 3334566667766667778889999999999999998654
No 36
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=61.91 E-value=29 Score=30.98 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhhccCCCCh-----hhhhhhcccccCHHHHHHHHHHHHHHcC
Q 021047 73 LAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKMKNTHFPL-----SKFQGDQKLIFDAQTIHRMELLILDALN 144 (318)
Q Consensus 73 lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~eE~~~pl-----~dl~~~~~~~~~~~~i~~mE~~IL~~L~ 144 (318)
.|-++++.-+....+-... ...+|++|+++|.+.-+..++- ..|.... .++.++|...=..|+..+.
T Consensus 195 ~a~~~l~lsl~d~~~l~~~---PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~t--g~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 195 HAQTFLALCATDYTFAMYP---PSMIATGSIGAAVQGLGACSMSGDELTELLAGIT--GTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HHHHHHHHHHHCGGGTTSC---HHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhccCC---HHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 3444455444444443334 6778888898888876543321 1222222 4667777666555555444
No 37
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=49.17 E-value=76 Score=23.31 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=54.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHhcCCc------cCCCCchhHHHHHHHHHHhhhhhccCCCChhhhhhhcccccCHH
Q 021047 57 ILQIQFACNFEPFISYLAVTYLDRFISRQE------IPQGKPWVLRLLAVSCISLAAKMKNTHFPLSKFQGDQKLIFDAQ 130 (318)
Q Consensus 57 i~~v~~~~~l~~~t~~lAv~~lDRfls~~~------v~~~~~~~lqL~avacL~iAaK~eE~~~pl~dl~~~~~~~~~~~ 130 (318)
+.++|..||+.. ..-.|-.++++|=..-. +.-++ ...+.+|+|.|+|.--..++-..|+..+ ...+.
T Consensus 6 v~dLcVqfgc~e-~~~~a~~lL~~Yk~~l~~~~~~~~D~s~----P~f~aaA~~~acr~~K~kVdK~KL~~~s--~lk~~ 78 (95)
T 3m03_A 6 IRDLAVQFSCIE-AVNMASKILKSYESSLPQTQQVDLDLSR----PLFTSAALLSACKILKLKVDKNKMVATS--GVKKA 78 (95)
T ss_dssp HHHHHHHHTCGG-GHHHHHHHHHHHHTTSCHHHHHHCCTTS----HHHHHHHHHHHHHHTTCCCCHHHHHHTT--CBCHH
T ss_pred HHHHHHHhCCHH-HHHHHHHHHHHHHHHhHHHhhccccccc----cHHHHHHHHHHHHHHccCCCHHHHHHHH--CCCHH
Confidence 356788888765 77788899999986542 23333 4567899999999988888766665555 45566
Q ss_pred HHHHHHHHHH
Q 021047 131 TIHRMELLIL 140 (318)
Q Consensus 131 ~i~~mE~~IL 140 (318)
++.+.|..+-
T Consensus 79 ~f~~l~~~~e 88 (95)
T 3m03_A 79 IFDRLCKQLE 88 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
No 38
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=46.79 E-value=1e+02 Score=26.94 Aligned_cols=54 Identities=6% Similarity=-0.009 Sum_probs=38.3
Q ss_pred ccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhc--CCCcccHHHHHHHHHHHHH
Q 021047 191 LLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSD--YVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 191 ~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~--~~~~~~l~~C~~~l~~~~~ 246 (318)
.-....-.+|+||+++|.+.-+.. .+ -...+..++ .|++++|..+-..|.+.+.
T Consensus 88 v~~~~lqlv~~acL~iA~K~eE~~-~p-~l~~~~~i~~~~~~~~ei~~mE~~IL~~L~ 143 (283)
T 1w98_B 88 VVKTLLQLIGISSLFIAAKLEEIY-PP-KLHQFAYVTDGACSGDEILTMELMIMKALK 143 (283)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHCSS-CC-CHHHHHHTTTTSSCHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcccC-CC-cHHHHHHHHcCCCCHHHHHHHHHHHHHHcC
Confidence 445677889999999999876421 12 234444454 4889999999988888764
No 39
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=28.93 E-value=2.7e+02 Score=23.75 Aligned_cols=65 Identities=9% Similarity=-0.051 Sum_probs=39.0
Q ss_pred HHHHHHcccccccccCHHHHHHHHHHHHHhhhCCCCCcchHHHhhhhc--CCCcccHHHHHHHHHHHHH
Q 021047 180 DIIFRAHSEIKLLEFRPSVIAASAVLLSSYELFPLQFPSFKTSILSSD--YVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 180 ~ll~~~l~d~~~~~~~PS~iAaAai~~a~~~l~~~~~~~~~~~l~~~~--~~~~~~l~~C~~~l~~~~~ 246 (318)
.+++.-+.....-....-.+|++|+++|.+.-+.. |.-...+..++ .|+.++|.+.=..|.+.+.
T Consensus 75 ~~lDRfLs~~~v~~~~lqLvg~tcl~iAsK~eE~~--p~~~~~l~~~~~~~yt~~~i~~mE~~IL~~L~ 141 (252)
T 1f5q_B 75 ALLDELFLSTRIDRENYQSTAAVALHIAGKVRAYM--PIKATQLAYLCGGATTADKLLTLEVKSLDTLS 141 (252)
T ss_dssp HHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHCSS--CCCHHHHHHHHCTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHCC
Confidence 33443333334445567789999999999865431 21233344443 4788888877777766554
No 40
>1unl_D Cyclin-dependent kinase 5 activator 1; inhibitor, ATP-analogue, neurodegen diseases; HET: RRC; 2.2A {Homo sapiens} SCOP: a.74.1.1 PDB: 1unh_D* 1ung_D*
Probab=26.46 E-value=2.7e+02 Score=22.86 Aligned_cols=66 Identities=21% Similarity=0.332 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHhhhhh--ccCCCChhhhhhhcc-ccc---CHHHHHHHHHHHHHHcCccccccChHHHHHHHHHhhC
Q 021047 93 WVLRLLAVSCISLAAKM--KNTHFPLSKFQGDQK-LIF---DAQTIHRMELLILDALNWRMRSITPFSFLCFFISLFE 164 (318)
Q Consensus 93 ~~lqL~avacL~iAaK~--eE~~~pl~dl~~~~~-~~~---~~~~i~~mE~~IL~~L~w~l~~pTp~~Fl~~~l~~~~ 164 (318)
-.+|-+.+|||+||--| .|+..|+.-|.++.+ -.| ...-|.+|-..+|+. ...|..|-+.|...-.
T Consensus 121 ~eLqa~vLTCLYlsYSYmGNEISYPLKPFlve~~ke~FWdRCl~ii~~~S~kML~i------N~~p~~Ftevf~eLK~ 192 (208)
T 1unl_D 121 HELQAVLLTCLYLSYSYMGNEISYPLKPFLVESCKEAFWDRCLSVINLMSSKMLQI------NADPHYFTQVFSDLKN 192 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSCCCSGGGCCSSCHHHHHHHHHHHHHHHHHHHHHH------HHCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCccccccCcceeecCCHHHHHHHHHHHHHhhchhhhee------cCCccHHHHHHHHHHh
Confidence 35999999999999887 566678877765542 111 122333444444432 2356677777766544
No 41
>3o0g_D Cyclin-dependent kinase 5 activator 1; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: a.74.1.1 PDB: 1h4l_D
Probab=24.45 E-value=2.5e+02 Score=21.90 Aligned_cols=69 Identities=17% Similarity=0.354 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHc--------CC-Ch-hHHHHHHHHHHHHhcCCccCCCCchhHHHHHHHHHHhhhhh--ccCCCChhh
Q 021047 51 QETVSLILQIQFAC--------NF-EP-FISYLAVTYLDRFISRQEIPQGKPWVLRLLAVSCISLAAKM--KNTHFPLSK 118 (318)
Q Consensus 51 ~~~v~Wi~~v~~~~--------~l-~~-~t~~lAv~~lDRfls~~~v~~~~~~~lqL~avacL~iAaK~--eE~~~pl~d 118 (318)
.++|-|+..|-..+ +| .| ..+| |+++-|=+-...+.. .-.+|-+..|||+||--+ .|+..|+.-
T Consensus 28 ~~~V~WlR~VDRsLLlQGWQD~~Fi~PanvVF--vYmL~r~~v~~~~~s--e~eLqa~~lTCLYlsYSYmGNEISYPLKP 103 (149)
T 3o0g_D 28 TDPVLWLRSVDRSLLLQGWQDQGFITPANVVF--LYMLCRDVISSEVGS--DHELQAVLLTCLYLSYSYMGNEISYPLKP 103 (149)
T ss_dssp HHHHHHHHHHHHHHHHHTSCSSCSCCHHHHHH--HHHHHHHHSCTTCCS--HHHHHHHHHHHHHHHHHHHCSSSCCCSGG
T ss_pred chhhhhHHhhhHHHHHccchhcccccchHHHH--HHHHHHHHcccccCC--HHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence 57888988876532 22 22 2222 333333333333332 336999999999999887 566678877
Q ss_pred hhhhc
Q 021047 119 FQGDQ 123 (318)
Q Consensus 119 l~~~~ 123 (318)
|.++.
T Consensus 104 Flv~~ 108 (149)
T 3o0g_D 104 FLVES 108 (149)
T ss_dssp GCCCS
T ss_pred hhhcc
Confidence 76554
No 42
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=21.28 E-value=71 Score=17.66 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHcCcc
Q 021047 129 AQTIHRMELLILDALNWR 146 (318)
Q Consensus 129 ~~~i~~mE~~IL~~L~w~ 146 (318)
.++|..+|..|-++|.|+
T Consensus 12 dqeikelennirkalsfd 29 (31)
T 2wh0_Q 12 DQEIKELENNIRKALSFD 29 (31)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 578999999999999886
No 43
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=21.25 E-value=1.5e+02 Score=21.77 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhhhCCCCCcchHHHhhhhcCCCcccHHHHHHHHHHHHH
Q 021047 198 VIAASAVLLSSYELFPLQFPSFKTSILSSDYVNKEDLSKCYDTVQEMVE 246 (318)
Q Consensus 198 ~iAaAai~~a~~~l~~~~~~~~~~~l~~~~~~~~~~l~~C~~~l~~~~~ 246 (318)
+-++||++.+.+.+.. ..=...|....|+.+.+.......+.++..
T Consensus 47 ~f~aaA~~~acr~~K~---kVdK~KL~~~s~lk~~~f~~l~~~~e~~~~ 92 (95)
T 3m03_A 47 LFTSAALLSACKILKL---KVDKNKMVATSGVKKAIFDRLCKQLEKIGQ 92 (95)
T ss_dssp HHHHHHHHHHHHHTTC---CCCHHHHHHTTCBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcc---CCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3466667777765532 122578888999999999999998888764
Done!