BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 021048
(318 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
Length = 108
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 144 SMYNLKNASDASTFNQAVKSLLDSLKIKAA-PGDKFXXXXXXXXXXXXXQTIYALVQCTP 202
S N + S FN+ ++++L L+ A G + T Y C
Sbjct: 8 SACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGA---PTAYGRATCKQ 64
Query: 203 DLSEQQCIDCLNNATELLPKCCDGRLGGRVIAPSCNFRYEIDRF 246
+S+ C CL+N + C+ +G RV C +YE F
Sbjct: 65 SISQSDCTACLSNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108
>pdb|4D8V|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8V|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis At Ph 4.2
pdb|4D8X|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P6322 At Ph 4.6
pdb|4D8Y|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|C Chain C, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|D Chain D, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|E Chain E, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D8Y|F Chain F, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group
P212121 At Ph 5.6
pdb|4D98|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D98|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Space Group H32
At Ph 7.5
pdb|4D9H|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4D9H|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenosine
pdb|4DA0|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2'-Deoxyguanosine
pdb|4DA6|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Ganciclovir
pdb|4DA7|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Aciclovir
pdb|4DA8|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
8-Bromoguanosine
pdb|4DAB|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Hypoxanthine
pdb|4DAE|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
6-Chloroguanosine
pdb|4DAN|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAN|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
2-Fluoroadenosine
pdb|4DAO|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAO|B Chain B, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Adenine
pdb|4DAR|A Chain A, Crystal Structure Of The Hexameric Purine Nucleoside
Phosphorylase From Bacillus Subtilis In Complex With
Tubercidin
Length = 253
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 21/80 (26%)
Query: 76 QNLDKVNAMGLCRGDVKPDSCRSCIATATLALPTRCPNQKEAIIWYDNCMLRYSNRFFFG 135
QNL +V + G R DVK R I LA+ + +Q NR FG
Sbjct: 103 QNLIRVGSCGAIRKDVK---VRDVI----LAMTSSTDSQM--------------NRVAFG 141
Query: 136 NMEFGPRFSMYNLKNASDAS 155
+++F P LKNA DA+
Sbjct: 142 SVDFAPCADFELLKNAYDAA 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,891,885
Number of Sequences: 62578
Number of extensions: 213461
Number of successful extensions: 387
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 384
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 14,973,337
effective HSP length: 99
effective length of query: 219
effective length of database: 8,778,115
effective search space: 1922407185
effective search space used: 1922407185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)