Query 021048
Match_columns 318
No_of_seqs 212 out of 1382
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:12:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01657 Stress-antifung: Salt 99.9 1.4E-25 2.9E-30 181.3 6.5 102 32-133 1-106 (106)
2 PF01657 Stress-antifung: Salt 99.9 3.9E-24 8.4E-29 172.8 8.4 99 144-246 2-106 (106)
3 KOG1924 RhoA GTPase effector D 84.4 1.3 2.9E-05 47.0 4.6 13 51-63 269-281 (1102)
4 COG3889 Predicted solute bindi 79.5 1.3 2.8E-05 47.0 2.4 23 294-316 847-869 (872)
5 PF06679 DUF1180: Protein of u 78.9 4.3 9.2E-05 35.4 5.1 13 305-317 99-111 (163)
6 PF07172 GRP: Glycine rich pro 68.1 4.7 0.0001 32.0 2.5 23 1-24 1-24 (95)
7 PF01690 PLRV_ORF5: Potato lea 66.2 4.8 0.0001 40.5 2.8 9 256-264 5-13 (465)
8 COG5178 PRP8 U5 snRNP spliceos 54.8 11 0.00025 42.0 3.3 21 255-275 9-31 (2365)
9 KOG2675 Adenylate cyclase-asso 51.7 15 0.00032 36.8 3.3 29 94-127 55-83 (480)
10 PRK06975 bifunctional uroporph 49.7 21 0.00045 37.9 4.3 10 116-125 162-171 (656)
11 PF03302 VSP: Giardia variant- 48.1 14 0.00031 36.6 2.6 21 298-318 372-392 (397)
12 PTZ00382 Variant-specific surf 41.2 12 0.00026 29.6 0.8 14 305-318 78-91 (96)
13 KOG1925 Rac1 GTPase effector F 36.4 52 0.0011 33.8 4.5 17 271-287 260-276 (817)
14 PLN03148 Blue copper-like prot 32.5 56 0.0012 28.6 3.6 8 142-149 70-77 (167)
15 PRK13042 superantigen-like pro 26.3 1.1E+02 0.0024 29.0 4.6 35 253-287 48-86 (291)
16 PF15195 TMEM210: TMEM210 fami 24.3 55 0.0012 26.0 1.9 9 223-231 46-54 (116)
17 KOG1923 Rac1 GTPase effector F 23.4 84 0.0018 33.8 3.6 15 205-219 217-231 (830)
18 KOG3671 Actin regulatory prote 22.8 86 0.0019 32.1 3.3 13 92-104 124-136 (569)
19 PF05308 Mito_fiss_reg: Mitoch 22.6 96 0.0021 29.0 3.5 6 124-129 69-74 (253)
No 1
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.92 E-value=1.4e-25 Score=181.33 Aligned_cols=102 Identities=43% Similarity=0.845 Sum_probs=78.1
Q ss_pred ccccC-CCCCcc-CCCChHHHHHHHHHHHhhcCCCCC--CCceeeccCCCCCeeEEEEeccCCCChhchHHHHHHHHHhc
Q 021048 32 YSVCS-SNQGNF-TVNSTYQANLNHLLSSLTSNTKID--TGFFNISYGQNLDKVNAMGLCRGDVKPDSCRSCIATATLAL 107 (318)
Q Consensus 32 ~~~C~-~~~~~~-~~~s~y~~NL~~ll~~L~s~a~~~--~gF~~~s~G~~~d~vygl~~CrgD~s~~~C~~Cl~~A~~~~ 107 (318)
|+.|+ +..++| +.+++|++||+.||+.|..+++.. .+|+++..|.++++||||+||++|+++.+|..||+.|+.++
T Consensus 1 ~~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~~~~ 80 (106)
T PF01657_consen 1 WHFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAGSGPDTVYGLAQCRGDLSPSDCRACLADAVANI 80 (106)
T ss_dssp ---E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE--ST---EEEEEEE-TTS-HHHHHHHHHHHHCCH
T ss_pred CCcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecCCCCCeEEEEEEcCCCCChhhhHHHHHHHHHHH
Confidence 68899 432577 578889999999999999997653 47999988999999999999999999999999999999999
Q ss_pred ccCCCCccceeEecceeEEEEccccc
Q 021048 108 PTRCPNQKEAIIWYDNCMLRYSNRFF 133 (318)
Q Consensus 108 ~~~C~~~~~a~i~~d~C~lRYs~~~F 133 (318)
.+.|+.+++|+||++.|+|||++++|
T Consensus 81 ~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 81 SSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp HHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999987
No 2
>PF01657 Stress-antifung: Salt stress response/antifungal; InterPro: IPR002902 This domain is found in plants and has no known function. The structure of this domain is known and it is thought to be involved in antifungal responses in plants []. Two copies of this domain are also found together in cysteine-rich protein kinases and cysteine-rich repeat secretory proteins. The domain contains four conserved cysteines.; PDB: 3A2E_D.
Probab=99.90 E-value=3.9e-24 Score=172.82 Aligned_cols=99 Identities=44% Similarity=0.735 Sum_probs=76.6
Q ss_pred eccc---ccCC-CChhHHHHHHHHHHHHHHhhcCCC-C-CceeeeccCCCCCCCCcEEEEeccCCCCChhhhHHHHHHHH
Q 021048 144 SMYN---LKNA-SDASTFNQAVKSLLDSLKIKAAPG-D-KFATGNANTSAGAGSQTIYALVQCTPDLSEQQCIDCLNNAT 217 (318)
Q Consensus 144 ~~~n---~~~~-t~~s~F~~~l~~ll~~L~~~Aa~s-~-~fatg~~~~~~~~~~~~vYgLaQC~~DLs~~dC~~CL~~a~ 217 (318)
+.|+ .+++ +++..|+++++.||..|..+++.+ + +|++++.+ .++++||||+||++||++++|+.||+.++
T Consensus 2 ~~Cs~~~~~~~~~~~~~f~~~l~~ll~~l~~~a~~~~~~~f~~~~~~----~~~~~vYgl~qC~~Dls~~dC~~Cl~~a~ 77 (106)
T PF01657_consen 2 HFCSSNTNNNYTTDNSTFEQNLNSLLSSLVSNAASSSSKGFATGSAG----SGPDTVYGLAQCRGDLSPSDCRACLADAV 77 (106)
T ss_dssp --E---SSB----TT-THHHHHHHHHHHHHHHGGGTT-TEEEEEE------ST---EEEEEEE-TTS-HHHHHHHHHHHH
T ss_pred CcCCCCCCCCcCCCCchHHHHHHHHHHHHHHHHhhccccCcEEeecC----CCCCeEEEEEEcCCCCChhhhHHHHHHHH
Confidence 4566 4445 456679999999999999998765 2 89999863 67789999999999999999999999999
Q ss_pred hhhcccCCCCccEEEECCceEEEEeccCC
Q 021048 218 ELLPKCCDGRLGGRVIAPSCNFRYEIDRF 246 (318)
Q Consensus 218 ~~i~~~C~~~~Ggrv~~~~C~lRYe~~~F 246 (318)
.+|+++|++++||+|++++|+||||+|+|
T Consensus 78 ~~~~~~C~~~~g~~v~~~~C~lRY~~~~F 106 (106)
T PF01657_consen 78 ANISSCCPGSRGGRVWYDSCFLRYENYPF 106 (106)
T ss_dssp CCHHHHTTSBSSEEEEESSEEEEEESS--
T ss_pred HHHHHhCCCCceEEEECCCEEEEEECCCC
Confidence 99999999999999999999999999998
No 3
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=84.42 E-value=1.3 Score=47.02 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=6.4
Q ss_pred HHHHHHHHhhcCC
Q 021048 51 NLNHLLSSLTSNT 63 (318)
Q Consensus 51 NL~~ll~~L~s~a 63 (318)
=+..+|..|...+
T Consensus 269 ~~ekvl~aiT~~a 281 (1102)
T KOG1924|consen 269 GLEKVLEAITTIA 281 (1102)
T ss_pred HHHHHHHHHHHHH
Confidence 3445555554443
No 4
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=79.50 E-value=1.3 Score=47.02 Aligned_cols=23 Identities=17% Similarity=0.164 Sum_probs=15.9
Q ss_pred ccccCCcceeeehhhHHHHHHHh
Q 021048 294 KGKASPSTSATFVLVLVPLLFWQ 316 (318)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
+|.+-+..++|+.|+.+||||-|
T Consensus 847 ~~~i~g~i~iiv~LaAla~lLrR 869 (872)
T COG3889 847 GGGICGPIVIIVGLAALALLLRR 869 (872)
T ss_pred ccccchHHHHHHHHHHHHHHHHh
Confidence 44443344577889999999876
No 5
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=78.90 E-value=4.3 Score=35.41 Aligned_cols=13 Identities=38% Similarity=0.478 Sum_probs=6.2
Q ss_pred ehhhHHHHHHHhc
Q 021048 305 FVLVLVPLLFWQY 317 (318)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (318)
.|++++-.+++.|
T Consensus 99 ~Vl~g~s~l~i~y 111 (163)
T PF06679_consen 99 YVLVGLSALAILY 111 (163)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 6
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=68.06 E-value=4.7 Score=31.97 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=12.2
Q ss_pred CCcchhHHHHHHHH-HHHHHHhhhc
Q 021048 1 MTSSSLLLSFCTNI-LLQLVALTIA 24 (318)
Q Consensus 1 m~~~~~~l~~~~~~-~~~~~~~~~~ 24 (318)
|.| |.||+|.++| ++||+++.++
T Consensus 1 MaS-K~~llL~l~LA~lLlisSeva 24 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALLLISSEVA 24 (95)
T ss_pred Cch-hHHHHHHHHHHHHHHHHhhhh
Confidence 885 6666554444 4444444433
No 7
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=66.24 E-value=4.8 Score=40.53 Aligned_cols=9 Identities=67% Similarity=1.320 Sum_probs=3.9
Q ss_pred CCCCCCCCC
Q 021048 256 TSPSPSPSP 264 (318)
Q Consensus 256 ~~p~p~~~~ 264 (318)
++|+|.|+|
T Consensus 5 p~P~P~P~P 13 (465)
T PF01690_consen 5 PPPSPGPSP 13 (465)
T ss_pred CCCCCCCCC
Confidence 334444444
No 8
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=54.79 E-value=11 Score=42.02 Aligned_cols=21 Identities=48% Similarity=1.102 Sum_probs=8.5
Q ss_pred CCCCCCCC--CCCCCCCCCCCCC
Q 021048 255 TTSPSPSP--SPASLPPPPTPTP 275 (318)
Q Consensus 255 ~~~p~p~~--~~~~~~~~~~~~~ 275 (318)
+|+||||| -|+|-||||||+.
T Consensus 9 ppppppppg~epps~pppPppPg 31 (2365)
T COG5178 9 PPPPPPPPGFEPPSQPPPPPPPG 31 (2365)
T ss_pred CcccccCCCCCCCCCCCCccCCC
Confidence 34444444 2334444444333
No 9
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=51.67 E-value=15 Score=36.82 Aligned_cols=29 Identities=10% Similarity=-0.144 Sum_probs=16.2
Q ss_pred hchHHHHHHHHHhcccCCCCccceeEecceeEEE
Q 021048 94 DSCRSCIATATLALPTRCPNQKEAIIWYDNCMLR 127 (318)
Q Consensus 94 ~~C~~Cl~~A~~~~~~~C~~~~~a~i~~d~C~lR 127 (318)
+.|..||+.......+ .++-+....|+++
T Consensus 55 ~~i~~~l~~~~~lS~k-----Iggdv~~~~~~v~ 83 (480)
T KOG2675|consen 55 DLISEPLAEYLKLSKK-----IGGDVADVAEMVK 83 (480)
T ss_pred HHHHhHHHHHHHHHHH-----hChhHHHHHHHHH
Confidence 4577777766654443 4555555555553
No 10
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=49.72 E-value=21 Score=37.85 Aligned_cols=10 Identities=10% Similarity=-0.130 Sum_probs=4.0
Q ss_pred ceeEecceeE
Q 021048 116 EAIIWYDNCM 125 (318)
Q Consensus 116 ~a~i~~d~C~ 125 (318)
|+.+.+-.||
T Consensus 162 Ga~V~~v~vY 171 (656)
T PRK06975 162 GAEVELVEAY 171 (656)
T ss_pred CCEEEEEeEE
Confidence 3334333444
No 11
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=48.14 E-value=14 Score=36.64 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=16.6
Q ss_pred CCcceeeehhhHHHHHHHhcC
Q 021048 298 SPSTSATFVLVLVPLLFWQYL 318 (318)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (318)
+++.+++||+-+|=||.|++|
T Consensus 372 IsvavvvvVgglvGfLcWwf~ 392 (397)
T PF03302_consen 372 ISVAVVVVVGGLVGFLCWWFI 392 (397)
T ss_pred eeehhHHHHHHHHHHHhhhee
Confidence 545555588899999999986
No 12
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=41.15 E-value=12 Score=29.59 Aligned_cols=14 Identities=36% Similarity=0.600 Sum_probs=9.5
Q ss_pred ehhhHHHHHHHhcC
Q 021048 305 FVLVLVPLLFWQYL 318 (318)
Q Consensus 305 ~~~~~~~~~~~~~~ 318 (318)
++.++|-||+|.++
T Consensus 78 ~v~~lv~~l~w~f~ 91 (96)
T PTZ00382 78 VVGGLVGFLCWWFV 91 (96)
T ss_pred HHHHHHHHHhheeE
Confidence 44466778888764
No 13
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=36.39 E-value=52 Score=33.79 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=9.1
Q ss_pred CCCCCCCCCCCCCCCCC
Q 021048 271 PTPTPTADQPPASQDKS 287 (318)
Q Consensus 271 ~~~~~~~~~~~~~~~~~ 287 (318)
|||++.+-.++++++++
T Consensus 260 PPPP~~~~L~~~v~~~~ 276 (817)
T KOG1925|consen 260 PPPPLAAPLPHSVPDSS 276 (817)
T ss_pred CCCCCcccCcCCCCCcc
Confidence 33444455566666554
No 14
>PLN03148 Blue copper-like protein; Provisional
Probab=32.54 E-value=56 Score=28.61 Aligned_cols=8 Identities=0% Similarity=0.098 Sum_probs=4.1
Q ss_pred ceeccccc
Q 021048 142 RFSMYNLK 149 (318)
Q Consensus 142 ~~~~~n~~ 149 (318)
.+..|+..
T Consensus 70 ~Y~~C~~~ 77 (167)
T PLN03148 70 GYDNCTTE 77 (167)
T ss_pred HcCcccCC
Confidence 45556544
No 15
>PRK13042 superantigen-like protein; Reviewed
Probab=26.32 E-value=1.1e+02 Score=29.04 Aligned_cols=35 Identities=23% Similarity=0.556 Sum_probs=18.0
Q ss_pred CCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCC
Q 021048 253 APTTSPSPSPSPASLPPP----PTPTPTADQPPASQDKS 287 (318)
Q Consensus 253 ~~~~~p~p~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 287 (318)
.....|.|.|+...+|.+ ++|+|....||+.+.++
T Consensus 48 ~k~~~~qp~p~~ttp~s~~~~t~qptp~~~tp~~~~~~~ 86 (291)
T PRK13042 48 TKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVET 86 (291)
T ss_pred ccccCCCCCCCCCCCCCCCccCCCCCCCCCCCCccCcCC
Confidence 333345555555444433 45566566666665554
No 16
>PF15195 TMEM210: TMEM210 family
Probab=24.32 E-value=55 Score=26.05 Aligned_cols=9 Identities=33% Similarity=0.944 Sum_probs=3.7
Q ss_pred cCCCCccEE
Q 021048 223 CCDGRLGGR 231 (318)
Q Consensus 223 ~C~~~~Ggr 231 (318)
.||+....|
T Consensus 46 tcP~h~~~R 54 (116)
T PF15195_consen 46 TCPGHMDNR 54 (116)
T ss_pred CCccccccc
Confidence 344444333
No 17
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=23.44 E-value=84 Score=33.83 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=8.6
Q ss_pred ChhhhHHHHHHHHhh
Q 021048 205 SEQQCIDCLNNATEL 219 (318)
Q Consensus 205 s~~dC~~CL~~a~~~ 219 (318)
.+-.|..|+..-..+
T Consensus 217 dels~m~k~~~~~e~ 231 (830)
T KOG1923|consen 217 DELSCMQKLSIEKER 231 (830)
T ss_pred chhHHHHHHHHHHHH
Confidence 445577776655444
No 18
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=22.76 E-value=86 Score=32.15 Aligned_cols=13 Identities=0% Similarity=0.033 Sum_probs=5.7
Q ss_pred ChhchHHHHHHHH
Q 021048 92 KPDSCRSCIATAT 104 (318)
Q Consensus 92 s~~~C~~Cl~~A~ 104 (318)
+..+|+.=.....
T Consensus 124 ~E~EA~~F~k~V~ 136 (569)
T KOG3671|consen 124 SEEEAQKFRKKVQ 136 (569)
T ss_pred CHHHHHHHHHHHH
Confidence 4445554444333
No 19
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=22.56 E-value=96 Score=28.96 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.6
Q ss_pred eEEEEc
Q 021048 124 CMLRYS 129 (318)
Q Consensus 124 C~lRYs 129 (318)
++.|+-
T Consensus 69 ~~~r~R 74 (253)
T PF05308_consen 69 SYARFR 74 (253)
T ss_pred ccceee
Confidence 444443
Done!