Query 021048
Match_columns 318
No_of_seqs 212 out of 1382
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 11:58:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 99.9 3E-28 1E-32 196.7 8.7 104 28-133 3-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 99.9 8.6E-28 2.9E-32 193.9 8.4 104 28-133 3-108 (108)
3 3a2e_A Ginkbilobin-2; domain 2 99.9 1.7E-26 5.6E-31 186.4 10.4 104 140-246 4-108 (108)
4 2e79_A Ginkbilobin-2; DUF26 fo 99.9 6.1E-26 2.1E-30 183.1 10.4 106 138-246 2-108 (108)
5 3iot_A Maltose-binding protein 71.5 0.82 2.8E-05 43.6 0.0 7 48-54 188-194 (449)
6 2v8f_C MDIA1, profilin IIA; al 60.1 8 0.00027 22.1 2.6 9 265-273 11-19 (26)
7 3qho_A Endoglucanase, 458AA lo 25.5 15 0.0005 35.7 0.0 23 292-316 433-455 (458)
8 1uff_A Intersectin 2; beta bar 21.1 1.3E+02 0.0044 21.8 4.6 6 192-197 28-33 (93)
9 2p4r_T E3 ubiquitin-protein li 18.8 92 0.0031 17.9 2.4 13 260-272 7-19 (26)
10 1uff_A Intersectin 2; beta bar 15.5 2E+02 0.0069 20.6 4.5 32 252-283 62-93 (93)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.95 E-value=3e-28 Score=196.67 Aligned_cols=104 Identities=19% Similarity=0.444 Sum_probs=94.1
Q ss_pred ccccccccCCCCCccCCCChHHHHHHHHHHHhhcCCCCCC-CceeeccCC-CCCeeEEEEeccCCCChhchHHHHHHHHH
Q 021048 28 DTLLYSVCSSNQGNFTVNSTYQANLNHLLSSLTSNTKIDT-GFFNISYGQ-NLDKVNAMGLCRGDVKPDSCRSCIATATL 105 (318)
Q Consensus 28 ~~~~~~~C~~~~~~~~~~s~y~~NL~~ll~~L~s~a~~~~-gF~~~s~G~-~~d~vygl~~CrgD~s~~~C~~Cl~~A~~ 105 (318)
+.++++.|++ ++|+++++|++||+.||++|+++++..+ +|++...|. ++++||||+|||+|+++++|+.||+.|+.
T Consensus 3 t~~v~~~Cn~--~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 3 TAFVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCEEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred cceeeeecCC--CccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3689999976 4999999999999999999999986543 466666654 56999999999999999999999999999
Q ss_pred hcccCCCCccceeEecceeEEEEccccc
Q 021048 106 ALPTRCPNQKEAIIWYDNCMLRYSNRFF 133 (318)
Q Consensus 106 ~~~~~C~~~~~a~i~~d~C~lRYs~~~F 133 (318)
++.+.||++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999987
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.94 E-value=8.6e-28 Score=193.92 Aligned_cols=104 Identities=19% Similarity=0.431 Sum_probs=96.4
Q ss_pred ccccccccCCCCCccCCCChHHHHHHHHHHHhhcCCCCC-CCceeeccCCCC-CeeEEEEeccCCCChhchHHHHHHHHH
Q 021048 28 DTLLYSVCSSNQGNFTVNSTYQANLNHLLSSLTSNTKID-TGFFNISYGQNL-DKVNAMGLCRGDVKPDSCRSCIATATL 105 (318)
Q Consensus 28 ~~~~~~~C~~~~~~~~~~s~y~~NL~~ll~~L~s~a~~~-~gF~~~s~G~~~-d~vygl~~CrgD~s~~~C~~Cl~~A~~ 105 (318)
++++++.|++ ++|+++++|++||+.||+.|+++++.+ .+|+++++|.++ ++||||+|||+|+++++|+.||+.|+.
T Consensus 3 t~~~~~~C~~--~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 2e79_A 3 TAFVSSACNT--QKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CCEEEEEECS--SBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceeeeeeCCC--CeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHHHHHH
Confidence 4789999997 489999999999999999999998653 358998888876 899999999999999999999999999
Q ss_pred hcccCCCCccceeEecceeEEEEccccc
Q 021048 106 ALPTRCPNQKEAIIWYDNCMLRYSNRFF 133 (318)
Q Consensus 106 ~~~~~C~~~~~a~i~~d~C~lRYs~~~F 133 (318)
++.+.|+++++|+||++.|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 9999999999999999999999999987
No 3
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.93 E-value=1.7e-26 Score=186.45 Aligned_cols=104 Identities=26% Similarity=0.511 Sum_probs=94.1
Q ss_pred CCceecccccCCCChhHHHHHHHHHHHHHHhhcCCCC-CceeeeccCCCCCCCCcEEEEeccCCCCChhhhHHHHHHHHh
Q 021048 140 GPRFSMYNLKNASDASTFNQAVKSLLDSLKIKAAPGD-KFATGNANTSAGAGSQTIYALVQCTPDLSEQQCIDCLNNATE 218 (318)
Q Consensus 140 ~~~~~~~n~~~~t~~s~F~~~l~~ll~~L~~~Aa~s~-~fatg~~~~~~~~~~~~vYgLaQC~~DLs~~dC~~CL~~a~~ 218 (318)
....+.|+.++++.++.|+++|+.||..|..+++.++ +|+++..+. .+.++||||+||++|+++++|+.||+.++.
T Consensus 4 ~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~---~~~~~vygl~qC~~Dls~~~C~~Cl~~a~~ 80 (108)
T 3a2e_A 4 AFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGS---GGAPTAYGRATCKQSISQSDCTACLSNLVN 80 (108)
T ss_dssp CEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCS---TTCCCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccCCceEeeccC---CCCceEEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999987665 677776543 556899999999999999999999999999
Q ss_pred hhcccCCCCccEEEECCceEEEEeccCC
Q 021048 219 LLPKCCDGRLGGRVIAPSCNFRYEIDRF 246 (318)
Q Consensus 219 ~i~~~C~~~~Ggrv~~~~C~lRYe~~~F 246 (318)
+|+++|++++||+||+++|+||||+++|
T Consensus 81 ~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 81 RIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp THHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 9999999999999999999999999998
No 4
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.93 E-value=6.1e-26 Score=183.06 Aligned_cols=106 Identities=25% Similarity=0.497 Sum_probs=94.9
Q ss_pred CCCCceecccccCCCChhHHHHHHHHHHHHHHhhcCCCC-CceeeeccCCCCCCCCcEEEEeccCCCCChhhhHHHHHHH
Q 021048 138 EFGPRFSMYNLKNASDASTFNQAVKSLLDSLKIKAAPGD-KFATGNANTSAGAGSQTIYALVQCTPDLSEQQCIDCLNNA 216 (318)
Q Consensus 138 d~~~~~~~~n~~~~t~~s~F~~~l~~ll~~L~~~Aa~s~-~fatg~~~~~~~~~~~~vYgLaQC~~DLs~~dC~~CL~~a 216 (318)
++.+.++.|+.+++++++.|+++++.||..|+.+++.++ +|++++.+. .+.++||||+||++|+++.+|+.||+.+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~---~~~~~vYgl~qC~~Dls~~~C~~Cl~~a 78 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGS---GGAPTAYGRATCKQSISQSDCTACLSNL 78 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTSEEEEEECCC---TTCCCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCcccEEEecCC---CCCCcEEEEEecCCCCChHHHHHHHHHH
Confidence 455678889988999999999999999999999987654 788886542 2347999999999999999999999999
Q ss_pred HhhhcccCCCCccEEEECCceEEEEeccCC
Q 021048 217 TELLPKCCDGRLGGRVIAPSCNFRYEIDRF 246 (318)
Q Consensus 217 ~~~i~~~C~~~~Ggrv~~~~C~lRYe~~~F 246 (318)
+.+++++|++++||+||+++|+||||+++|
T Consensus 79 ~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 79 VNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 999999999999999999999999999998
No 5
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=71.46 E-value=0.82 Score=43.63 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 021048 48 YQANLNH 54 (318)
Q Consensus 48 y~~NL~~ 54 (318)
+..-|+.
T Consensus 188 ~~~al~~ 194 (449)
T 3iot_A 188 AKAGLTF 194 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444433
No 6
>2v8f_C MDIA1, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus}
Probab=60.10 E-value=8 Score=22.06 Aligned_cols=9 Identities=67% Similarity=1.316 Sum_probs=4.0
Q ss_pred CCCCCCCCC
Q 021048 265 ASLPPPPTP 273 (318)
Q Consensus 265 ~~~~~~~~~ 273 (318)
+..||||+.
T Consensus 11 ~giPpPppl 19 (26)
T 2v8f_C 11 ASIPPPPPL 19 (26)
T ss_pred CCCCCCCCC
Confidence 444444443
No 7
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A*
Probab=25.53 E-value=15 Score=35.68 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred ccccccCCcceeeehhhHHHHHHHh
Q 021048 292 TQKGKASPSTSATFVLVLVPLLFWQ 316 (318)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (318)
|.+|+-+ .++++.|++||+|+-|
T Consensus 433 ~~~~~~~--~~~~~~~~~~~~~~~~ 455 (458)
T 3qho_A 433 TSKKICG--PAILIILAVFSLLLRR 455 (458)
T ss_dssp -------------------------
T ss_pred CCCeeeH--HHHHHHHHHHHHHHHh
Confidence 4355555 4678899999998755
No 8
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=21.15 E-value=1.3e+02 Score=21.77 Aligned_cols=6 Identities=17% Similarity=-0.069 Sum_probs=2.5
Q ss_pred CcEEEE
Q 021048 192 QTIYAL 197 (318)
Q Consensus 192 ~~vYgL 197 (318)
+.|+.+
T Consensus 28 d~i~v~ 33 (93)
T 1uff_A 28 DIIQVD 33 (93)
T ss_dssp CEEEEC
T ss_pred CEEEEe
Confidence 344443
No 9
>2p4r_T E3 ubiquitin-protein ligase itchy homolog; SH3 domain peptide ligand complex; 2.00A {Rattus norvegicus}
Probab=18.80 E-value=92 Score=17.89 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=5.5
Q ss_pred CCCCCCCCCCCCC
Q 021048 260 PSPSPASLPPPPT 272 (318)
Q Consensus 260 p~~~~~~~~~~~~ 272 (318)
.++.|+.+||+++
T Consensus 7 rP~rPsrPpP~tp 19 (26)
T 2p4r_T 7 RPPRPSRPPPPTP 19 (26)
T ss_pred CCCCCCCCCCCCC
Confidence 3444444444433
No 10
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Probab=15.48 E-value=2e+02 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021048 252 DAPTTSPSPSPSPASLPPPPTPTPTADQPPAS 283 (318)
Q Consensus 252 ~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~ 283 (318)
......+++..+++..+||+.+.|+...++++
T Consensus 62 ~~~~~~~~~~~p~~~~~pp~~~~p~~~~p~s~ 93 (93)
T 1uff_A 62 MPSSENEKAVSPKKALLPPTVSLSATSGPSSG 93 (93)
T ss_dssp CCSSSSCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_pred cCCccccccCCCCCCCCCCCCCCCCCCCCCCC
Done!