Query 021048
Match_columns 318
No_of_seqs 212 out of 1382
Neff 6.8
Searched_HMMs 13730
Date Mon Mar 25 11:59:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021048.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/021048hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1evsa_ a.26.1.1 (A:) Oncostat 21.0 10 0.00074 29.6 0.2 18 255-272 134-151 (184)
2 d1cl4a_ g.40.1.1 (A:) Nucleoca 8.5 48 0.0035 18.6 0.6 22 107-128 1-22 (32)
3 d1weoa_ g.44.1.1 (A:) Cellulos 6.3 71 0.0052 22.1 0.7 29 207-245 44-72 (93)
4 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.6 1.4E+02 0.01 18.5 1.9 20 94-113 29-48 (65)
5 d1ha9a_ g.3.2.1 (A:) Trypsin i 4.8 86 0.0063 17.3 0.3 9 196-204 11-19 (34)
6 d1vqoe2 d.141.1.1 (E:80-172) R 4.4 1.3E+02 0.0097 20.8 1.2 30 98-127 60-90 (93)
7 d1weya_ d.58.7.1 (A:) Calcipre 3.9 5.6E+02 0.04 16.8 5.3 67 213-279 23-104 (104)
8 d3d4ub1 g.9.1.3 (B:1-37) Carbo 3.8 88 0.0064 17.5 -0.2 25 98-124 2-27 (37)
9 d1rmda2 g.44.1.1 (A:1-86) V(D) 3.7 2.3E+02 0.016 18.8 2.0 17 96-112 46-62 (86)
10 d1of5b_ d.17.4.2 (B:) mRNA tra 3.5 2E+02 0.014 21.9 1.6 54 227-296 77-130 (165)
No 1
>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.98 E-value=10 Score=29.58 Aligned_cols=18 Identities=44% Similarity=0.702 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 021048 255 TTSPSPSPSPASLPPPPT 272 (318)
Q Consensus 255 ~~~p~p~~~~~~~~~~~~ 272 (318)
.++|+++++.++.||||+
T Consensus 134 ~aeptq~~~gas~p~~pt 151 (184)
T d1evsa_ 134 TAEPTKAGRGASQPPTPT 151 (184)
T ss_dssp ------------------
T ss_pred cCCCCCCCCCCCCCCCCC
Confidence 455666666665554443
No 2
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=8.45 E-value=48 Score=18.57 Aligned_cols=22 Identities=27% Similarity=0.709 Sum_probs=17.3
Q ss_pred cccCCCCccceeEecceeEEEE
Q 021048 107 LPTRCPNQKEAIIWYDNCMLRY 128 (318)
Q Consensus 107 ~~~~C~~~~~a~i~~d~C~lRY 128 (318)
+...||.=+.++-|-.+|.-++
T Consensus 1 ~P~lCPrC~kG~HWa~~Crsk~ 22 (32)
T d1cl4a_ 1 VPGLCPRCKRGKHWANECKSKT 22 (32)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCccCccccCcchHHHHhhhhh
Confidence 3568999899999999986443
No 3
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.33 E-value=71 Score=22.07 Aligned_cols=29 Identities=24% Similarity=0.517 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHhhhcccCCCCccEEEECCceEEEEeccC
Q 021048 207 QQCIDCLNNATELLPKCCDGRLGGRVIAPSCNFRYEIDR 245 (318)
Q Consensus 207 ~dC~~CL~~a~~~i~~~C~~~~Ggrv~~~~C~lRYe~~~ 245 (318)
.-|+.|...-..+-.+.|+ .|..||...+
T Consensus 44 PvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~k 72 (93)
T d1weoa_ 44 PACRPCYEYERREGTQNCP----------QCKTRYKRLR 72 (93)
T ss_dssp CCCHHHHHHHHHTSCSSCT----------TTCCCCCCCT
T ss_pred ccchHHHHHHHhccCccCc----------ccCChhhhhc
Confidence 5699999999999999997 6999997643
No 4
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=1.4e+02 Score=18.51 Aligned_cols=20 Identities=25% Similarity=0.632 Sum_probs=17.0
Q ss_pred hchHHHHHHHHHhcccCCCC
Q 021048 94 DSCRSCIATATLALPTRCPN 113 (318)
Q Consensus 94 ~~C~~Cl~~A~~~~~~~C~~ 113 (318)
.-|..|+..-+..-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 57999999998777777996
No 5
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=4.79 E-value=86 Score=17.32 Aligned_cols=9 Identities=33% Similarity=0.593 Sum_probs=6.6
Q ss_pred EEeccCCCC
Q 021048 196 ALVQCTPDL 204 (318)
Q Consensus 196 gLaQC~~DL 204 (318)
-|-||++|.
T Consensus 11 ilkkcrrds 19 (34)
T d1ha9a_ 11 ILKKCRRDS 19 (34)
T ss_dssp CCCBCSSGG
T ss_pred HHHHhcccc
Confidence 367899983
No 6
>d1vqoe2 d.141.1.1 (E:80-172) Ribosomal protein L6 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=4.43 E-value=1.3e+02 Score=20.81 Aligned_cols=30 Identities=7% Similarity=0.190 Sum_probs=22.0
Q ss_pred HHHHHHHHhcccCCCC-ccceeEecceeEEE
Q 021048 98 SCIATATLALPTRCPN-QKEAIIWYDNCMLR 127 (318)
Q Consensus 98 ~Cl~~A~~~~~~~C~~-~~~a~i~~d~C~lR 127 (318)
.=+...+..|.+.|-- .++-|++.|+.++-
T Consensus 60 E~V~qtAA~Ieq~t~vk~kD~R~FlDGIYv~ 90 (93)
T d1vqoe2 60 EAVGQTAADIEQLTRINDKDVRVFQDGVYIT 90 (93)
T ss_dssp HHHHHHHHHHHHTTCCSSSCTTTCCCEEEEE
T ss_pred HHHHHHHHHHHHhhccCCCCccEeecCEEEE
Confidence 3455666677777773 57999999999874
No 7
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.86 E-value=5.6e+02 Score=16.81 Aligned_cols=67 Identities=12% Similarity=0.064 Sum_probs=0.0
Q ss_pred HHHHHhhhcccCCCCccEEEECCc--eEEEE-------------eccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 021048 213 LNNATELLPKCCDGRLGGRVIAPS--CNFRY-------------EIDRFYDVTADAPTTSPSPSPSPASLPPPPTPTPTA 277 (318)
Q Consensus 213 L~~a~~~i~~~C~~~~Ggrv~~~~--C~lRY-------------e~~~F~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~ 277 (318)
+...+.++-..+..-...++.... |++.| ..+.|.+..-.+....+.+...+...||+|...||+
T Consensus 23 ~k~~l~~lF~~~G~i~~~~~~k~~~~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~a~~~~~~~~~~~pP~~~~sPP~ 102 (104)
T d1weya_ 23 TRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSGPS 102 (104)
T ss_dssp HHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSSCCSCCSCCCCCCCCCCC
T ss_pred HHHHHHHHhcccccceEEEEecCCCEEEEEECCHHHHHHHHHHhcccccCCCEeEEeecccCCCCCcccCCCCCCCCccC
Q ss_pred CC
Q 021048 278 DQ 279 (318)
Q Consensus 278 ~~ 279 (318)
..
T Consensus 103 sg 104 (104)
T d1weya_ 103 SG 104 (104)
T ss_dssp CC
T ss_pred CC
No 8
>d3d4ub1 g.9.1.3 (B:1-37) Carboxypeptidase inhibitor {Tick (Rhipicephalus bursa) [TaxId: 67831]}
Probab=3.81 E-value=88 Score=17.54 Aligned_cols=25 Identities=36% Similarity=0.858 Sum_probs=0.0
Q ss_pred HHHHHHHHhccc-CCCCccceeEeccee
Q 021048 98 SCIATATLALPT-RCPNQKEAIIWYDNC 124 (318)
Q Consensus 98 ~Cl~~A~~~~~~-~C~~~~~a~i~~d~C 124 (318)
.|++.-+.-+.+ .||. ++++-|.+|
T Consensus 2 ~cvs~gfgc~p~s~cp~--e~rlsy~gc 27 (37)
T d3d4ub1 2 ECVSKGFGCLPQSDCPQ--EARLSYGGC 27 (37)
T ss_dssp HHHHTTCEEECGGGSCG--GGEECCSCC
T ss_pred cccccCcCcCccccCCH--hHeeccCCc
No 9
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=3.71 E-value=2.3e+02 Score=18.79 Aligned_cols=17 Identities=35% Similarity=0.895 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhcccCCC
Q 021048 96 CRSCIATATLALPTRCP 112 (318)
Q Consensus 96 C~~Cl~~A~~~~~~~C~ 112 (318)
|+.|+....+.-...||
T Consensus 46 C~~Ci~~~~~~~~~~CP 62 (86)
T d1rmda2 46 CRICILRCLKVMGSYCP 62 (86)
T ss_dssp EHHHHHHHHHHTCSBCT
T ss_pred hHHHHHHHHhhCCCcCc
No 10
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.48 E-value=2e+02 Score=21.95 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred CccEEEECCceEEEEeccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 021048 227 RLGGRVIAPSCNFRYEIDRFYDVTADAPTTSPSPSPSPASLPPPPTPTPTADQPPASQDKSTNSATQKGK 296 (318)
Q Consensus 227 ~~Ggrv~~~~C~lRYe~~~F~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (318)
..|..|...+|.+||+.. +.++..-...=|. .|-..+++..+++.+|.+-.||.
T Consensus 77 G~gT~vi~~sgkVrfDes----gr~k~G~~~~~~~------------~~~~~~~~~~~~~~~~~rp~wg~ 130 (165)
T d1of5b_ 77 GSGTLICNVNCKVRFDES----GRDKMGQDATVPI------------QPNNTGNRNRPNDMNKPRPLWGP 130 (165)
T ss_dssp TTTEEEEEEEEEEECC---------------------------------------------------CCC
T ss_pred CCcEEEEEEeeEEEECCC----CCCCCCCcccccc------------CCcccCCCCcccccccCCccccc
Done!