Query 021051
Match_columns 318
No_of_seqs 164 out of 1442
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 07:13:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0567 HEAT repeat-containing 100.0 4.3E-31 9.3E-36 213.4 25.3 286 17-309 4-289 (289)
2 PRK09687 putative lyase; Provi 100.0 9.7E-31 2.1E-35 223.9 25.9 247 13-297 20-280 (280)
3 PRK09687 putative lyase; Provi 100.0 1E-26 2.2E-31 199.2 24.0 229 45-303 19-254 (280)
4 PRK13800 putative oxidoreducta 99.9 4.4E-25 9.4E-30 217.8 26.2 271 11-295 616-895 (897)
5 PRK13800 putative oxidoreducta 99.9 7E-24 1.5E-28 209.3 28.0 238 14-265 650-896 (897)
6 TIGR02270 conserved hypothetic 99.9 8.8E-21 1.9E-25 169.6 26.0 244 15-300 53-297 (410)
7 COG1413 FOG: HEAT repeat [Ener 99.8 2E-18 4.4E-23 153.6 25.4 253 16-304 43-309 (335)
8 TIGR02270 conserved hypothetic 99.8 3.9E-18 8.6E-23 152.7 23.7 232 34-304 39-272 (410)
9 COG1413 FOG: HEAT repeat [Ener 99.8 6E-17 1.3E-21 144.1 24.9 249 14-297 72-333 (335)
10 KOG0166 Karyopherin (importin) 99.8 7.6E-17 1.7E-21 144.7 20.8 270 18-313 68-407 (514)
11 KOG0166 Karyopherin (importin) 99.7 6.4E-16 1.4E-20 138.8 20.1 278 16-318 109-459 (514)
12 PLN03200 cellulose synthase-in 99.6 9.5E-14 2.1E-18 142.3 22.6 266 16-304 446-769 (2102)
13 COG5064 SRP1 Karyopherin (impo 99.6 2.9E-14 6.2E-19 120.1 15.5 270 17-312 72-413 (526)
14 PLN03200 cellulose synthase-in 99.6 6.8E-13 1.5E-17 136.2 24.1 253 16-302 404-726 (2102)
15 KOG0567 HEAT repeat-containing 99.5 6.8E-13 1.5E-17 108.3 16.1 218 14-267 34-279 (289)
16 COG5064 SRP1 Karyopherin (impo 99.5 1.4E-12 3.1E-17 110.0 16.7 261 14-297 112-441 (526)
17 KOG2062 26S proteasome regulat 99.4 2E-12 4.4E-17 118.6 12.1 291 5-304 326-658 (929)
18 PF13646 HEAT_2: HEAT repeats; 99.4 4.7E-12 1E-16 89.7 9.5 86 208-295 1-88 (88)
19 PF13646 HEAT_2: HEAT repeats; 99.3 4.1E-12 8.9E-17 90.0 7.0 86 52-139 2-88 (88)
20 KOG4224 Armadillo repeat prote 99.3 5.9E-10 1.3E-14 95.2 17.7 258 17-300 168-494 (550)
21 KOG4224 Armadillo repeat prote 99.2 9.4E-10 2E-14 94.0 16.5 227 49-300 167-447 (550)
22 PF01602 Adaptin_N: Adaptin N 99.2 6.2E-10 1.3E-14 105.2 17.2 256 17-302 80-372 (526)
23 PF01602 Adaptin_N: Adaptin N 99.1 6.4E-09 1.4E-13 98.4 20.3 253 17-302 43-336 (526)
24 KOG2023 Nuclear transport rece 99.1 1.6E-09 3.5E-14 98.9 12.4 288 13-310 125-516 (885)
25 KOG2171 Karyopherin (importin) 99.0 5.2E-08 1.1E-12 94.5 20.7 284 16-304 118-509 (1075)
26 KOG2023 Nuclear transport rece 99.0 5.4E-09 1.2E-13 95.6 12.7 258 20-304 94-468 (885)
27 PTZ00429 beta-adaptin; Provisi 99.0 1.3E-07 2.7E-12 91.3 21.1 119 19-142 71-207 (746)
28 PTZ00429 beta-adaptin; Provisi 99.0 4.6E-07 9.9E-12 87.5 24.8 255 17-301 33-328 (746)
29 KOG2171 Karyopherin (importin) 98.9 1.2E-07 2.6E-12 92.0 19.9 123 16-142 4-146 (1075)
30 PF10508 Proteasom_PSMB: Prote 98.9 4.8E-07 1E-11 84.6 21.3 261 14-299 75-420 (503)
31 KOG1060 Vesicle coat complex A 98.8 4.5E-07 9.7E-12 84.8 16.1 139 172-315 321-474 (968)
32 PF10508 Proteasom_PSMB: Prote 98.7 4.9E-07 1.1E-11 84.5 16.7 249 21-297 43-364 (503)
33 smart00638 LPD_N Lipoprotein N 98.7 6.1E-06 1.3E-10 78.9 22.2 239 38-294 316-573 (574)
34 COG5116 RPN2 26S proteasome re 98.7 7.6E-07 1.6E-11 80.6 14.5 275 24-304 344-655 (926)
35 KOG1242 Protein containing ada 98.6 2.8E-06 6E-11 77.9 16.9 255 16-300 174-484 (569)
36 PF01347 Vitellogenin_N: Lipop 98.6 8.4E-06 1.8E-10 78.8 20.2 244 39-294 353-617 (618)
37 KOG1242 Protein containing ada 98.6 7.9E-06 1.7E-10 75.0 18.4 258 15-302 95-447 (569)
38 KOG2259 Uncharacterized conser 98.6 8.8E-07 1.9E-11 81.4 11.8 270 20-302 202-514 (823)
39 PF05804 KAP: Kinesin-associat 98.5 2.9E-05 6.3E-10 74.5 21.5 263 13-304 287-612 (708)
40 KOG1059 Vesicle coat complex A 98.5 9.2E-06 2E-10 75.6 16.3 250 17-295 110-397 (877)
41 KOG1241 Karyopherin (importin) 98.4 1.8E-06 3.8E-11 80.7 10.6 259 20-302 94-438 (859)
42 KOG2062 26S proteasome regulat 98.4 1E-05 2.2E-10 75.5 14.9 57 16-73 413-473 (929)
43 KOG1062 Vesicle coat complex A 98.4 3.1E-05 6.7E-10 73.0 17.8 270 18-298 109-450 (866)
44 KOG1060 Vesicle coat complex A 98.4 3.8E-05 8.2E-10 72.3 17.9 84 214-300 295-422 (968)
45 COG5240 SEC21 Vesicle coat com 98.4 3.4E-05 7.3E-10 70.4 16.7 257 17-302 265-558 (898)
46 PF04826 Arm_2: Armadillo-like 98.3 3.5E-05 7.5E-10 65.2 15.6 164 81-267 13-204 (254)
47 KOG1059 Vesicle coat complex A 98.3 3E-05 6.5E-10 72.3 14.7 233 12-267 140-400 (877)
48 cd00020 ARM Armadillo/beta-cat 98.3 7E-06 1.5E-10 61.1 8.8 59 237-297 49-118 (120)
49 KOG0211 Protein phosphatase 2A 98.2 2.4E-05 5.2E-10 75.3 13.7 255 16-299 355-664 (759)
50 KOG1824 TATA-binding protein-i 98.2 0.00015 3.3E-09 69.7 17.8 208 14-248 815-1055(1233)
51 PF04826 Arm_2: Armadillo-like 98.2 0.00017 3.7E-09 61.0 16.5 212 13-258 9-252 (254)
52 KOG2259 Uncharacterized conser 98.2 6.5E-06 1.4E-10 75.9 7.9 216 54-300 203-476 (823)
53 KOG0213 Splicing factor 3b, su 98.1 5.1E-05 1.1E-09 71.1 13.3 222 56-304 806-1070(1172)
54 cd00020 ARM Armadillo/beta-cat 98.1 2.9E-05 6.3E-10 57.7 10.0 90 50-142 8-119 (120)
55 PF05804 KAP: Kinesin-associat 98.1 0.00099 2.1E-08 64.2 22.4 258 14-300 329-650 (708)
56 COG5240 SEC21 Vesicle coat com 98.0 0.00015 3.3E-09 66.3 13.1 229 15-270 302-557 (898)
57 KOG1058 Vesicle coat complex C 97.9 0.00047 1E-08 64.9 15.7 258 21-286 104-412 (948)
58 KOG1241 Karyopherin (importin) 97.9 0.00031 6.8E-09 66.1 14.3 247 28-302 184-533 (859)
59 KOG1061 Vesicle coat complex A 97.9 0.00054 1.2E-08 64.8 15.5 90 50-142 87-188 (734)
60 COG5215 KAP95 Karyopherin (imp 97.9 0.00039 8.6E-09 63.6 13.8 256 21-302 99-440 (858)
61 smart00638 LPD_N Lipoprotein N 97.9 0.0019 4.1E-08 62.0 19.1 208 65-300 312-546 (574)
62 KOG1058 Vesicle coat complex C 97.8 0.00018 4E-09 67.6 11.1 218 54-302 104-350 (948)
63 PF13513 HEAT_EZ: HEAT-like re 97.8 5.1E-05 1.1E-09 48.1 5.2 45 253-297 1-55 (55)
64 KOG1240 Protein kinase contain 97.8 0.00075 1.6E-08 66.7 15.3 197 81-297 423-683 (1431)
65 COG5181 HSH155 U2 snRNP splice 97.8 0.0007 1.5E-08 62.6 13.7 193 85-304 651-875 (975)
66 KOG2025 Chromosome condensatio 97.8 0.008 1.7E-07 56.7 20.3 112 17-134 86-213 (892)
67 KOG1062 Vesicle coat complex A 97.8 0.00068 1.5E-08 64.3 13.5 88 52-142 110-207 (866)
68 COG5116 RPN2 26S proteasome re 97.8 0.0007 1.5E-08 62.0 13.0 157 81-266 517-691 (926)
69 KOG1078 Vesicle coat complex C 97.7 0.0069 1.5E-07 57.6 19.8 121 175-298 393-531 (865)
70 KOG1824 TATA-binding protein-i 97.7 0.0026 5.7E-08 61.6 16.8 189 82-301 819-1038(1233)
71 PF13513 HEAT_EZ: HEAT-like re 97.7 9.8E-05 2.1E-09 46.8 4.6 44 32-75 1-54 (55)
72 COG5096 Vesicle coat complex, 97.6 0.0015 3.1E-08 62.9 14.1 124 14-142 16-155 (757)
73 KOG1240 Protein kinase contain 97.6 0.00053 1.1E-08 67.7 11.3 209 33-267 438-724 (1431)
74 KOG2025 Chromosome condensatio 97.6 0.0036 7.8E-08 58.9 15.8 173 59-266 95-292 (892)
75 KOG0211 Protein phosphatase 2A 97.6 0.0012 2.7E-08 63.8 13.4 222 17-267 399-663 (759)
76 KOG0213 Splicing factor 3b, su 97.6 0.0042 9E-08 58.8 16.0 284 14-305 797-1148(1172)
77 KOG0212 Uncharacterized conser 97.6 0.0046 9.9E-08 56.7 15.8 123 15-142 83-236 (675)
78 KOG0915 Uncharacterized conser 97.5 0.0041 8.8E-08 63.1 15.5 262 16-302 818-1163(1702)
79 COG5096 Vesicle coat complex, 97.5 0.0033 7.3E-08 60.5 13.7 123 174-300 56-196 (757)
80 PF01347 Vitellogenin_N: Lipop 97.3 0.0011 2.3E-08 64.3 9.0 122 15-138 485-617 (618)
81 PF03130 HEAT_PBS: PBS lyase H 97.3 0.00027 5.8E-09 37.5 2.7 26 255-280 1-26 (27)
82 KOG1061 Vesicle coat complex A 97.2 0.011 2.5E-07 56.2 14.2 195 15-234 12-230 (734)
83 COG5181 HSH155 U2 snRNP splice 97.2 0.003 6.5E-08 58.6 10.1 193 80-296 604-826 (975)
84 smart00567 EZ_HEAT E-Z type HE 97.2 0.00051 1.1E-08 37.4 3.4 29 253-281 1-29 (30)
85 PF12348 CLASP_N: CLASP N term 97.2 0.0015 3.3E-08 54.7 7.8 114 26-142 15-159 (228)
86 COG5215 KAP95 Karyopherin (imp 96.9 0.077 1.7E-06 49.2 16.3 279 15-302 132-482 (858)
87 PF12717 Cnd1: non-SMC mitotic 96.9 0.0049 1.1E-07 49.5 7.4 78 62-142 1-91 (178)
88 PF06685 DUF1186: Protein of u 96.8 0.12 2.6E-06 43.6 15.1 75 174-248 112-196 (249)
89 PF12717 Cnd1: non-SMC mitotic 96.8 0.0067 1.5E-07 48.7 7.5 76 191-268 4-92 (178)
90 KOG1293 Proteins containing ar 96.8 0.12 2.6E-06 48.7 16.1 219 60-304 388-632 (678)
91 KOG1078 Vesicle coat complex C 96.7 0.065 1.4E-06 51.3 14.6 89 173-267 429-531 (865)
92 PF03130 HEAT_PBS: PBS lyase H 96.7 0.0019 4.2E-08 34.1 2.8 26 222-247 1-26 (27)
93 PF12348 CLASP_N: CLASP N term 96.7 0.0088 1.9E-07 50.0 8.3 119 19-142 56-205 (228)
94 PF02985 HEAT: HEAT repeat; I 96.6 0.0028 6.2E-08 34.7 3.2 26 239-266 2-27 (31)
95 KOG4413 26S proteasome regulat 96.6 0.4 8.7E-06 41.7 20.3 262 13-297 79-437 (524)
96 KOG1517 Guanine nucleotide bin 96.6 0.22 4.7E-06 49.5 17.3 226 48-304 471-737 (1387)
97 PF12755 Vac14_Fab1_bd: Vacuol 96.6 0.0062 1.3E-07 43.4 5.5 51 239-291 29-89 (97)
98 PF02985 HEAT: HEAT repeat; I 96.5 0.0047 1E-07 33.8 3.5 27 115-142 2-28 (31)
99 KOG1077 Vesicle coat complex A 96.5 0.32 7E-06 46.3 16.9 58 16-75 111-174 (938)
100 KOG0212 Uncharacterized conser 96.3 0.33 7.1E-06 45.1 15.5 210 15-246 166-421 (675)
101 COG5218 YCG1 Chromosome conden 96.3 0.12 2.6E-06 48.2 12.8 121 16-142 91-228 (885)
102 PF12755 Vac14_Fab1_bd: Vacuol 96.3 0.011 2.4E-07 42.1 5.1 53 205-259 26-88 (97)
103 smart00567 EZ_HEAT E-Z type HE 96.2 0.005 1.1E-07 33.4 2.6 27 33-59 2-28 (30)
104 KOG1820 Microtubule-associated 96.1 0.095 2E-06 51.6 11.9 176 81-280 254-455 (815)
105 COG5218 YCG1 Chromosome conden 96.0 0.16 3.4E-06 47.4 12.2 175 57-266 99-298 (885)
106 KOG2160 Armadillo/beta-catenin 95.8 0.77 1.7E-05 40.3 15.2 72 114-202 167-238 (342)
107 KOG1077 Vesicle coat complex A 95.6 2 4.3E-05 41.3 17.7 90 174-267 330-432 (938)
108 KOG0915 Uncharacterized conser 95.5 0.88 1.9E-05 47.2 16.1 63 238-302 1278-1347(1702)
109 PF12719 Cnd3: Nuclear condens 95.5 0.39 8.5E-06 42.0 12.6 84 56-142 34-142 (298)
110 KOG4535 HEAT and armadillo rep 95.4 0.057 1.2E-06 49.0 7.1 163 60-267 402-602 (728)
111 PF05004 IFRD: Interferon-rela 95.4 0.64 1.4E-05 40.8 13.6 92 173-266 129-255 (309)
112 KOG1293 Proteins containing ar 95.2 0.28 6E-06 46.3 11.1 136 93-248 388-548 (678)
113 KOG0414 Chromosome condensatio 95.2 0.064 1.4E-06 53.6 7.4 128 81-232 920-1061(1251)
114 KOG4535 HEAT and armadillo rep 95.1 0.35 7.7E-06 44.1 11.0 257 18-304 255-564 (728)
115 KOG4653 Uncharacterized conser 95.1 0.52 1.1E-05 46.0 12.7 65 57-123 735-812 (982)
116 KOG1820 Microtubule-associated 94.8 0.35 7.6E-06 47.8 11.2 170 11-203 248-442 (815)
117 PF00514 Arm: Armadillo/beta-c 94.6 0.067 1.4E-06 31.3 3.7 28 270-297 12-39 (41)
118 PF08713 DNA_alkylation: DNA a 94.4 1.7 3.6E-05 35.7 13.2 128 177-308 55-193 (213)
119 KOG4413 26S proteasome regulat 94.2 3.5 7.5E-05 36.1 16.2 207 48-268 81-333 (524)
120 cd07064 AlkD_like_1 A new stru 94.1 2.4 5.2E-05 34.9 13.2 120 181-304 54-184 (208)
121 PF05004 IFRD: Interferon-rela 94.0 1.6 3.5E-05 38.3 12.7 90 18-109 45-158 (309)
122 KOG1243 Protein kinase [Genera 94.0 0.11 2.3E-06 49.4 5.5 158 50-232 331-512 (690)
123 PF10363 DUF2435: Protein of u 93.9 0.36 7.7E-06 34.0 6.8 73 174-248 4-88 (92)
124 KOG1517 Guanine nucleotide bin 93.8 0.43 9.3E-06 47.6 9.2 164 80-267 472-670 (1387)
125 PF06685 DUF1186: Protein of u 93.6 1.6 3.5E-05 36.8 11.4 78 32-110 56-141 (249)
126 KOG2032 Uncharacterized conser 93.3 4.3 9.2E-05 37.4 14.0 89 17-109 259-369 (533)
127 KOG0946 ER-Golgi vesicle-tethe 93.1 0.84 1.8E-05 44.2 9.8 66 235-302 120-198 (970)
128 PF00514 Arm: Armadillo/beta-c 93.1 0.16 3.5E-06 29.6 3.5 28 49-76 12-39 (41)
129 PF10363 DUF2435: Protein of u 93.1 0.45 9.7E-06 33.5 6.3 74 207-282 4-89 (92)
130 KOG2005 26S proteasome regulat 93.1 8.6 0.00019 37.0 17.9 107 194-302 627-746 (878)
131 KOG1943 Beta-tubulin folding c 93.0 6.7 0.00014 39.7 15.9 123 16-140 341-497 (1133)
132 KOG2956 CLIP-associating prote 92.9 4.5 9.8E-05 37.1 13.6 124 82-233 331-475 (516)
133 KOG4653 Uncharacterized conser 92.8 3.7 7.9E-05 40.4 13.5 127 13-142 724-875 (982)
134 KOG2160 Armadillo/beta-catenin 92.7 1.6 3.4E-05 38.5 10.2 92 16-109 124-238 (342)
135 PF12719 Cnd3: Nuclear condens 92.7 0.75 1.6E-05 40.2 8.6 51 180-232 34-90 (298)
136 KOG1020 Sister chromatid cohes 92.5 1.5 3.2E-05 45.7 11.0 120 174-297 817-958 (1692)
137 PF11791 Aconitase_B_N: Aconit 92.4 0.37 8E-06 36.9 5.3 106 11-120 17-133 (154)
138 KOG1020 Sister chromatid cohes 92.2 0.95 2.1E-05 46.9 9.3 122 16-141 816-958 (1692)
139 KOG0168 Putative ubiquitin fus 92.0 2.9 6.3E-05 41.1 11.8 150 17-188 168-350 (1051)
140 KOG0414 Chromosome condensatio 92.0 0.81 1.8E-05 46.2 8.4 124 174-301 920-1066(1251)
141 KOG1949 Uncharacterized conser 91.9 1.2 2.5E-05 42.8 8.9 133 52-208 177-335 (1005)
142 cd07064 AlkD_like_1 A new stru 91.7 5.9 0.00013 32.6 12.2 118 21-142 51-178 (208)
143 PF05918 API5: Apoptosis inhib 91.3 2.3 5E-05 40.2 10.2 116 175-295 25-158 (556)
144 PF05918 API5: Apoptosis inhib 91.1 1.9 4E-05 40.8 9.5 92 206-300 23-126 (556)
145 KOG1243 Protein kinase [Genera 91.0 0.55 1.2E-05 44.8 6.0 59 81-142 331-397 (690)
146 KOG4199 Uncharacterized conser 91.0 11 0.00023 33.3 16.9 129 173-302 283-447 (461)
147 KOG0946 ER-Golgi vesicle-tethe 91.0 2 4.3E-05 41.8 9.5 126 13-142 19-194 (970)
148 KOG0168 Putative ubiquitin fus 90.8 4.5 9.7E-05 39.9 11.7 160 51-233 169-362 (1051)
149 KOG2032 Uncharacterized conser 90.8 5.8 0.00013 36.6 11.9 143 71-233 205-369 (533)
150 PF11791 Aconitase_B_N: Aconit 90.7 0.93 2E-05 34.7 5.9 106 172-281 21-137 (154)
151 KOG2122 Beta-catenin-binding p 90.3 7.5 0.00016 40.9 13.2 63 237-301 530-603 (2195)
152 KOG2956 CLIP-associating prote 89.8 1.6 3.5E-05 39.8 7.5 124 15-142 328-476 (516)
153 cd00872 PI3Ka_I Phosphoinositi 89.5 4.5 9.7E-05 32.1 9.2 92 47-139 37-134 (171)
154 PF13001 Ecm29: Proteasome sta 89.5 4.4 9.6E-05 38.3 10.8 177 98-299 220-443 (501)
155 KOG2933 Uncharacterized conser 89.3 1.1 2.4E-05 38.6 5.9 124 13-139 85-230 (334)
156 KOG1943 Beta-tubulin folding c 89.3 7.4 0.00016 39.4 12.2 93 49-142 341-456 (1133)
157 smart00185 ARM Armadillo/beta- 89.3 0.67 1.4E-05 26.5 3.4 28 270-297 12-39 (41)
158 KOG2005 26S proteasome regulat 89.0 23 0.00049 34.3 15.7 68 234-303 637-708 (878)
159 KOG1222 Kinesin associated pro 88.6 21 0.00045 33.2 21.9 264 15-302 303-624 (791)
160 KOG1967 DNA repair/transcripti 88.4 4 8.6E-05 40.5 9.6 133 80-233 867-1022(1030)
161 PF07571 DUF1546: Protein of u 88.2 0.8 1.7E-05 32.3 3.8 53 217-269 17-79 (92)
162 PF12460 MMS19_C: RNAPII trans 87.9 17 0.00036 33.5 13.3 59 206-266 323-392 (415)
163 PF11698 V-ATPase_H_C: V-ATPas 87.7 1.2 2.7E-05 32.8 4.6 29 271-299 87-115 (119)
164 KOG1048 Neural adherens juncti 87.6 30 0.00065 33.9 21.3 95 15-112 232-350 (717)
165 KOG1967 DNA repair/transcripti 87.1 11 0.00023 37.7 11.6 124 174-299 868-1024(1030)
166 cd00872 PI3Ka_I Phosphoinositi 87.1 4.9 0.00011 31.9 8.0 18 219-236 84-101 (171)
167 KOG1949 Uncharacterized conser 86.8 4.3 9.4E-05 39.2 8.6 141 83-249 177-353 (1005)
168 cd00256 VATPase_H VATPase_H, r 86.3 28 0.0006 32.2 19.9 268 16-300 101-426 (429)
169 PF11701 UNC45-central: Myosin 85.9 5.1 0.00011 31.3 7.5 121 175-297 5-157 (157)
170 cd00870 PI3Ka_III Phosphoinosi 85.6 9.4 0.0002 30.2 8.9 79 47-126 44-125 (166)
171 smart00185 ARM Armadillo/beta- 85.2 1.5 3.3E-05 24.9 3.4 28 237-266 12-39 (41)
172 PF11698 V-ATPase_H_C: V-ATPas 85.2 0.73 1.6E-05 34.0 2.3 58 16-74 43-111 (119)
173 cd03561 VHS VHS domain family; 85.1 7.7 0.00017 29.3 8.0 46 30-75 16-63 (133)
174 PF08713 DNA_alkylation: DNA a 85.1 8.6 0.00019 31.5 9.0 121 18-142 53-183 (213)
175 KOG1932 TATA binding protein a 84.9 50 0.0011 34.0 16.4 59 53-111 646-705 (1180)
176 cd00870 PI3Ka_III Phosphoinosi 84.7 7.4 0.00016 30.8 7.9 68 204-272 44-111 (166)
177 cd00864 PI3Ka Phosphoinositide 84.5 9.5 0.00021 29.6 8.4 78 48-126 38-118 (152)
178 PF12830 Nipped-B_C: Sister ch 84.3 3.3 7.2E-05 33.4 6.0 58 82-142 10-73 (187)
179 KOG3678 SARM protein (with ste 84.1 10 0.00022 34.9 9.3 127 172-300 179-337 (832)
180 KOG0413 Uncharacterized conser 83.8 1.7 3.7E-05 43.3 4.6 106 33-142 946-1072(1529)
181 cd00869 PI3Ka_II Phosphoinosit 83.5 13 0.00029 29.3 8.9 92 47-139 37-134 (169)
182 KOG3678 SARM protein (with ste 83.3 38 0.00083 31.4 13.9 232 46-300 177-453 (832)
183 PF00613 PI3Ka: Phosphoinositi 82.6 6.4 0.00014 31.7 6.9 79 46-125 42-123 (184)
184 COG5098 Chromosome condensatio 82.6 3.1 6.6E-05 40.1 5.7 107 33-142 911-1036(1128)
185 smart00288 VHS Domain present 82.4 14 0.00029 28.0 8.3 80 30-109 16-109 (133)
186 KOG2973 Uncharacterized conser 82.2 17 0.00038 31.6 9.5 87 175-267 5-110 (353)
187 PF12830 Nipped-B_C: Sister ch 81.8 5 0.00011 32.4 6.1 60 207-268 9-74 (187)
188 PF03224 V-ATPase_H_N: V-ATPas 81.4 12 0.00026 32.9 8.8 42 100-142 92-133 (312)
189 PF13251 DUF4042: Domain of un 81.2 11 0.00025 30.2 7.8 27 116-142 42-68 (182)
190 PF00790 VHS: VHS domain; Int 81.1 10 0.00022 29.0 7.3 78 31-108 22-115 (140)
191 smart00145 PI3Ka Phosphoinosit 80.3 16 0.00035 29.4 8.5 78 47-125 42-122 (184)
192 COG5098 Chromosome condensatio 80.3 4.6 9.9E-05 39.0 6.0 88 18-109 301-413 (1128)
193 KOG1048 Neural adherens juncti 80.3 22 0.00048 34.8 10.6 105 80-205 233-350 (717)
194 cd03568 VHS_STAM VHS domain fa 80.2 12 0.00026 28.8 7.5 79 30-109 16-108 (144)
195 cd00869 PI3Ka_II Phosphoinosit 80.1 14 0.00031 29.2 7.9 17 220-236 85-101 (169)
196 PF14668 RICTOR_V: Rapamycin-i 79.6 3.9 8.6E-05 27.3 4.0 43 67-110 5-57 (73)
197 cd00871 PI4Ka Phosphoinositide 79.6 17 0.00037 29.0 8.2 86 48-136 40-128 (175)
198 PF00613 PI3Ka: Phosphoinositi 79.3 6 0.00013 31.8 5.8 29 219-247 90-121 (184)
199 PF09450 DUF2019: Domain of un 78.9 2.6 5.7E-05 30.3 3.1 42 238-281 48-89 (106)
200 smart00145 PI3Ka Phosphoinosit 78.4 19 0.00041 29.0 8.3 29 219-247 89-120 (184)
201 cd00864 PI3Ka Phosphoinositide 78.4 18 0.0004 28.1 8.0 75 205-280 38-115 (152)
202 PF11701 UNC45-central: Myosin 78.0 15 0.00033 28.6 7.6 61 204-265 84-156 (157)
203 KOG4338 Predicted lipoprotein 77.8 1.1E+02 0.0023 33.1 16.2 237 62-303 402-652 (1680)
204 KOG1525 Sister chromatid cohes 77.4 9.5 0.00021 40.0 7.7 123 174-300 260-406 (1266)
205 PF14668 RICTOR_V: Rapamycin-i 77.1 6.6 0.00014 26.3 4.5 44 99-142 4-57 (73)
206 cd03568 VHS_STAM VHS domain fa 76.9 27 0.00058 26.9 8.5 27 205-231 36-62 (144)
207 PF11838 ERAP1_C: ERAP1-like C 76.1 45 0.00099 29.1 11.1 60 219-279 168-227 (324)
208 PF13429 TPR_15: Tetratricopep 76.1 15 0.00032 31.5 7.8 103 200-302 157-266 (280)
209 KOG0413 Uncharacterized conser 75.9 3.8 8.3E-05 40.9 4.2 79 62-142 944-1034(1529)
210 PF10274 ParcG: Parkin co-regu 75.9 40 0.00086 27.1 10.3 60 172-233 37-107 (183)
211 cd03561 VHS VHS domain family; 75.8 30 0.00066 26.0 8.5 82 217-300 15-113 (133)
212 cd03569 VHS_Hrs_Vps27p VHS dom 74.9 36 0.00077 26.1 8.7 47 29-75 19-67 (142)
213 KOG1525 Sister chromatid cohes 74.8 20 0.00044 37.7 9.2 124 16-142 259-404 (1266)
214 KOG1222 Kinesin associated pro 74.8 75 0.0016 29.8 16.6 56 14-71 343-409 (791)
215 KOG2274 Predicted importin 9 [ 73.4 32 0.0007 34.5 9.6 136 124-301 14-159 (1005)
216 TIGR02412 pepN_strep_liv amino 73.2 1.1E+02 0.0024 31.1 17.0 82 199-282 642-730 (831)
217 PF12765 Cohesin_HEAT: HEAT re 73.0 2.9 6.4E-05 24.5 1.8 23 49-71 18-40 (42)
218 TIGR02917 PEP_TPR_lipo putativ 72.7 1.1E+02 0.0023 30.6 25.3 129 174-302 755-889 (899)
219 cd03567 VHS_GGA VHS domain fam 72.7 40 0.00087 25.7 8.5 45 30-74 17-63 (139)
220 PF08506 Cse1: Cse1; InterPro 70.8 21 0.00046 32.2 7.6 118 176-294 213-370 (370)
221 KOG4500 Rho/Rac GTPase guanine 70.4 90 0.002 28.8 19.2 91 206-296 315-428 (604)
222 KOG1248 Uncharacterized conser 70.4 1.4E+02 0.0031 31.1 14.1 83 59-142 664-766 (1176)
223 KOG1991 Nuclear transport rece 70.0 1.3E+02 0.0029 30.6 14.7 61 17-77 411-490 (1010)
224 KOG2973 Uncharacterized conser 70.0 76 0.0017 27.8 17.8 88 17-110 4-110 (353)
225 PF12765 Cohesin_HEAT: HEAT re 69.5 7.3 0.00016 22.8 3.0 24 206-229 18-41 (42)
226 PRK04330 hypothetical protein; 69.3 35 0.00076 23.6 6.6 59 239-297 15-84 (88)
227 PF11865 DUF3385: Domain of un 69.0 5.7 0.00012 31.2 3.2 27 208-234 12-39 (160)
228 TIGR03504 FimV_Cterm FimV C-te 68.9 21 0.00046 21.2 4.8 41 256-296 2-43 (44)
229 TIGR02412 pepN_strep_liv amino 68.2 1.4E+02 0.0031 30.3 22.7 256 12-300 528-825 (831)
230 PF09450 DUF2019: Domain of un 68.2 7.3 0.00016 28.1 3.2 43 207-249 48-90 (106)
231 TIGR00117 acnB aconitate hydra 68.1 38 0.00083 33.9 9.0 137 11-155 20-167 (844)
232 cd08050 TAF6 TATA Binding Prot 68.0 91 0.002 27.9 11.4 63 125-205 279-341 (343)
233 KOG2759 Vacuolar H+-ATPase V1 67.8 1E+02 0.0022 28.3 17.4 63 237-300 366-439 (442)
234 cd03569 VHS_Hrs_Vps27p VHS dom 67.5 54 0.0012 25.1 8.5 29 270-298 84-113 (142)
235 PF14500 MMS19_N: Dos2-interac 67.0 81 0.0018 27.0 12.9 122 19-142 2-152 (262)
236 PF11838 ERAP1_C: ERAP1-like C 66.1 22 0.00047 31.2 6.7 62 62-124 168-229 (324)
237 KOG2933 Uncharacterized conser 65.9 29 0.00062 30.3 6.9 56 209-266 91-156 (334)
238 TIGR02917 PEP_TPR_lipo putativ 65.5 1.5E+02 0.0033 29.6 23.1 106 174-279 789-898 (899)
239 PF07571 DUF1546: Protein of u 65.4 15 0.00033 25.7 4.5 66 125-209 17-82 (92)
240 PF03685 UPF0147: Uncharacteri 65.4 42 0.00091 23.1 6.8 59 238-296 11-80 (85)
241 PF12460 MMS19_C: RNAPII trans 64.2 1.2E+02 0.0026 27.9 15.8 162 115-302 191-397 (415)
242 PF11940 DUF3458: Domain of un 64.0 1.1E+02 0.0025 27.6 13.9 37 7-44 75-112 (367)
243 COG3118 Thioredoxin domain-con 64.0 99 0.0022 26.9 13.0 126 174-299 153-287 (304)
244 smart00288 VHS Domain present 63.3 46 0.001 25.1 7.1 81 218-300 16-112 (133)
245 KOG2274 Predicted importin 9 [ 63.3 60 0.0013 32.7 9.2 128 93-235 15-157 (1005)
246 PF11865 DUF3385: Domain of un 63.2 71 0.0015 25.0 11.3 30 113-142 10-39 (160)
247 KOG4500 Rho/Rac GTPase guanine 60.8 1.4E+02 0.0031 27.6 15.6 67 236-304 314-395 (604)
248 PF03224 V-ATPase_H_N: V-ATPas 60.2 75 0.0016 27.9 8.9 111 192-302 91-230 (312)
249 cd08050 TAF6 TATA Binding Prot 60.2 1.2E+02 0.0026 27.2 10.2 15 252-266 281-295 (343)
250 PF00790 VHS: VHS domain; Int 58.7 49 0.0011 25.1 6.6 80 219-300 22-119 (140)
251 TIGR02414 pepN_proteo aminopep 58.4 2.2E+02 0.0048 29.2 17.3 124 174-300 690-830 (863)
252 cd06561 AlkD_like A new struct 57.4 31 0.00066 27.7 5.6 61 240-302 108-173 (197)
253 PF13251 DUF4042: Domain of un 56.9 1E+02 0.0022 24.8 11.6 38 81-120 40-77 (182)
254 COG4912 Predicted DNA alkylati 56.5 62 0.0014 26.8 7.0 81 218-300 98-184 (222)
255 TIGR00117 acnB aconitate hydra 55.8 75 0.0016 31.9 8.6 91 172-266 24-124 (844)
256 KOG4199 Uncharacterized conser 55.7 1.5E+02 0.0033 26.5 21.6 255 33-302 90-406 (461)
257 KOG2549 Transcription initiati 55.6 1.1E+02 0.0024 29.0 9.2 53 217-269 309-371 (576)
258 COG4912 Predicted DNA alkylati 55.0 28 0.00061 28.7 4.8 19 93-111 165-183 (222)
259 PF07539 DRIM: Down-regulated 53.9 30 0.00065 26.5 4.6 71 206-280 17-98 (141)
260 PF08167 RIX1: rRNA processing 53.1 1E+02 0.0022 24.2 7.8 26 272-299 118-143 (165)
261 cd03567 VHS_GGA VHS domain fam 52.9 1E+02 0.0022 23.5 8.5 80 217-298 16-115 (139)
262 KOG1988 Uncharacterized conser 52.6 2.6E+02 0.0056 28.3 11.4 226 17-267 25-280 (970)
263 PF09759 Atx10homo_assoc: Spin 52.1 26 0.00056 25.2 3.7 33 272-304 30-64 (102)
264 PF05536 Neurochondrin: Neuroc 51.9 2.3E+02 0.0049 27.3 17.0 209 15-264 4-257 (543)
265 COG5369 Uncharacterized conser 50.6 62 0.0013 30.7 6.7 95 45-142 427-544 (743)
266 KOG2199 Signal transducing ada 49.4 1E+02 0.0022 28.0 7.6 78 31-109 25-116 (462)
267 COG1698 Uncharacterized protei 48.2 91 0.002 21.7 6.9 46 238-283 18-72 (93)
268 PF08569 Mo25: Mo25-like; Int 47.6 88 0.0019 27.9 7.2 56 175-232 211-280 (335)
269 KOG1087 Cytosolic sorting prot 47.5 62 0.0013 30.3 6.4 80 31-110 18-111 (470)
270 cd00871 PI4Ka Phosphoinositide 47.4 1.4E+02 0.0031 23.8 7.6 30 219-248 84-116 (175)
271 KOG0392 SNF2 family DNA-depend 46.9 69 0.0015 33.7 6.9 26 82-109 79-104 (1549)
272 PF04388 Hamartin: Hamartin pr 46.9 1.4E+02 0.0031 29.4 9.1 117 16-142 4-139 (668)
273 PF11935 DUF3453: Domain of un 46.8 1.8E+02 0.0038 24.5 9.3 133 122-302 1-148 (239)
274 COG5369 Uncharacterized conser 45.6 46 0.001 31.5 5.2 104 78-202 429-543 (743)
275 KOG1087 Cytosolic sorting prot 45.1 1.3E+02 0.0028 28.3 8.0 87 215-303 14-116 (470)
276 PF14663 RasGEF_N_2: Rapamycin 43.7 86 0.0019 23.0 5.6 28 208-235 10-37 (115)
277 PF08389 Xpo1: Exportin 1-like 43.0 1.4E+02 0.003 22.3 7.6 13 220-232 100-112 (148)
278 PF01851 PC_rep: Proteasome/cy 42.2 61 0.0013 18.0 3.7 20 268-287 15-34 (35)
279 PF08506 Cse1: Cse1; InterPro 41.9 68 0.0015 29.1 5.7 19 27-45 264-282 (370)
280 PF12530 DUF3730: Protein of u 41.5 2.1E+02 0.0045 23.9 16.6 61 204-265 119-186 (234)
281 PLN00094 aconitate hydratase 2 41.5 1.9E+02 0.004 29.5 8.8 135 12-155 90-235 (938)
282 cd03572 ENTH_epsin_related ENT 41.3 1E+02 0.0022 23.0 5.6 79 49-141 38-117 (122)
283 PF13429 TPR_15: Tetratricopep 40.4 1.2E+02 0.0026 25.8 7.0 105 173-278 164-274 (280)
284 PF14559 TPR_19: Tetratricopep 40.3 92 0.002 19.5 4.9 45 237-281 9-54 (68)
285 KOG1822 Uncharacterized conser 39.5 6E+02 0.013 28.6 15.8 88 53-142 880-987 (2067)
286 PF11940 DUF3458: Domain of un 39.4 2.9E+02 0.0064 25.0 11.3 105 34-139 220-330 (367)
287 COG5330 Uncharacterized protei 38.6 1.5E+02 0.0032 26.7 7.0 61 16-78 7-76 (364)
288 COG1049 AcnB Aconitase B [Ener 38.0 2.3E+02 0.0049 27.5 8.4 136 12-156 21-167 (852)
289 KOG1992 Nuclear export recepto 37.8 4.4E+02 0.0096 26.7 10.5 60 83-142 5-67 (960)
290 PF13001 Ecm29: Proteasome sta 37.3 3.4E+02 0.0073 25.8 9.8 105 33-138 219-345 (501)
291 PF09759 Atx10homo_assoc: Spin 37.1 80 0.0017 22.7 4.3 29 81-109 29-57 (102)
292 PRK10370 formate-dependent nit 37.0 2.3E+02 0.0049 23.0 13.6 95 205-299 90-192 (198)
293 PF10274 ParcG: Parkin co-regu 36.8 1.4E+02 0.003 24.1 6.0 58 17-76 39-107 (183)
294 COG3118 Thioredoxin domain-con 35.8 3E+02 0.0065 24.1 15.8 94 48-141 151-249 (304)
295 PLN00094 aconitate hydratase 2 35.4 2.2E+02 0.0049 29.0 8.3 106 172-283 93-209 (938)
296 COG5231 VMA13 Vacuolar H+-ATPa 35.0 37 0.00081 29.9 2.7 15 17-31 357-371 (432)
297 KOG2759 Vacuolar H+-ATPase V1 34.7 3.7E+02 0.0081 24.8 15.1 59 206-266 366-436 (442)
298 KOG2213 Apoptosis inhibitor 5/ 34.6 80 0.0017 28.7 4.8 32 13-46 58-89 (460)
299 cd03572 ENTH_epsin_related ENT 33.9 2E+02 0.0043 21.4 6.4 80 206-298 38-118 (122)
300 PF14663 RasGEF_N_2: Rapamycin 32.5 72 0.0016 23.4 3.7 24 239-264 10-33 (115)
301 PRK09238 bifunctional aconitat 31.4 3.1E+02 0.0066 27.9 8.6 136 11-155 20-166 (835)
302 KOG2011 Sister chromatid cohes 31.3 2.4E+02 0.0053 29.3 8.0 121 93-231 298-431 (1048)
303 COG1600 Uncharacterized Fe-S p 31.2 65 0.0014 28.7 3.7 41 252-295 296-336 (337)
304 PF15565 Imm16: Immunity prote 31.1 2.1E+02 0.0045 20.8 6.0 51 194-244 20-71 (106)
305 KOG2122 Beta-catenin-binding p 30.9 7.7E+02 0.017 27.3 18.0 91 190-282 366-493 (2195)
306 KOG1992 Nuclear export recepto 30.8 1.1E+02 0.0025 30.5 5.5 124 174-298 362-526 (960)
307 PF14961 BROMI: Broad-minded p 29.7 1.9E+02 0.0042 30.4 7.0 63 14-77 159-230 (1296)
308 PF04499 SAPS: SIT4 phosphatas 29.3 4.9E+02 0.011 24.6 10.0 102 197-302 25-152 (475)
309 KOG4646 Uncharacterized conser 29.0 2.7E+02 0.0059 21.4 6.1 60 174-234 17-86 (173)
310 COG5110 RPN1 26S proteasome re 29.0 5.4E+02 0.012 24.9 19.8 90 15-108 412-513 (881)
311 PF07539 DRIM: Down-regulated 27.9 2.8E+02 0.006 21.2 11.0 30 49-78 17-46 (141)
312 PF15565 Imm16: Immunity prote 26.8 2.5E+02 0.0054 20.3 6.0 50 38-87 21-71 (106)
313 PF08620 RPAP1_C: RPAP1-like, 26.2 64 0.0014 21.6 2.2 30 14-45 37-66 (73)
314 KOG1851 Uncharacterized conser 26.0 5.5E+02 0.012 28.2 9.5 121 190-312 1542-1690(1710)
315 KOG0905 Phosphoinositide 3-kin 25.3 8.7E+02 0.019 26.1 11.6 98 172-270 820-921 (1639)
316 PF07499 RuvA_C: RuvA, C-termi 24.6 1.6E+02 0.0035 17.4 3.8 24 256-279 3-28 (47)
317 PRK15179 Vi polysaccharide bio 24.3 7.3E+02 0.016 24.8 14.1 75 205-279 103-181 (694)
318 PF12530 DUF3730: Protein of u 23.6 4.3E+02 0.0094 22.0 16.2 32 173-206 121-153 (234)
319 PF08569 Mo25: Mo25-like; Int 23.5 4.7E+02 0.01 23.4 7.8 59 206-266 209-281 (335)
320 KOG0904 Phosphatidylinositol 3 23.4 4.5E+02 0.0097 26.9 7.9 125 15-140 540-675 (1076)
321 PRK15174 Vi polysaccharide exp 22.7 7.5E+02 0.016 24.4 26.0 8 271-278 371-378 (656)
322 KOG2137 Protein kinase [Signal 22.7 4E+02 0.0087 26.3 7.5 93 206-299 389-496 (700)
323 PRK14015 pepN aminopeptidase N 22.2 8.8E+02 0.019 25.1 14.0 173 65-265 684-875 (875)
324 PF14664 RICTOR_N: Rapamycin-i 21.8 6.1E+02 0.013 23.0 17.9 183 94-297 37-267 (371)
325 KOG4646 Uncharacterized conser 21.7 3.8E+02 0.0083 20.7 7.6 28 238-267 59-86 (173)
326 KOG4337 Microsomal triglycerid 21.5 8E+02 0.017 24.3 18.8 219 56-297 351-592 (896)
327 KOG1932 TATA binding protein a 21.2 1E+03 0.022 25.3 16.0 136 73-234 635-802 (1180)
328 KOG0905 Phosphoinositide 3-kin 21.2 1E+03 0.023 25.6 13.2 129 13-142 818-956 (1639)
329 PRK09238 bifunctional aconitat 21.1 5.4E+02 0.012 26.2 8.2 106 173-284 25-141 (835)
330 cd03565 VHS_Tom1 VHS domain fa 20.9 3.8E+02 0.0083 20.4 7.3 25 275-299 88-115 (141)
331 KOG0392 SNF2 family DNA-depend 20.9 3.5E+02 0.0075 28.9 6.9 91 49-142 816-924 (1549)
332 PF10193 Telomere_reg-2: Telom 20.7 3.5E+02 0.0075 19.8 6.7 28 220-247 67-94 (114)
333 KOG0904 Phosphatidylinositol 3 20.6 4.7E+02 0.01 26.8 7.5 27 252-278 624-650 (1076)
334 PF14561 TPR_20: Tetratricopep 20.6 3E+02 0.0065 19.0 7.2 60 240-299 9-73 (90)
335 TIGR02414 pepN_proteo aminopep 20.5 9.5E+02 0.021 24.8 13.7 46 97-142 673-718 (863)
336 PF08167 RIX1: rRNA processing 20.2 4.3E+02 0.0092 20.6 9.0 29 17-47 26-54 (165)
No 1
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.3e-31 Score=213.43 Aligned_cols=286 Identities=53% Similarity=0.812 Sum_probs=262.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHP 96 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~ 96 (318)
.++.+.+.|.++..+...|.+|+..|..++.+.++..+.+.+.+++...+...++.||+++...+++.|...+.+.+..|
T Consensus 4 ~i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~p 83 (289)
T KOG0567|consen 4 EIETIGNILVNKSQPLQNRFRALFNLRNLLGPAAIKAITKAFIDDSALLKHELAYVLGQMQDEDAVPVLVEVLLDESQEP 83 (289)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHhhhccCChHHHHHHHHhcccchhhhccchhhhhhhhccchhhHHHHHHhcccccch
Confidence 57788889998776779999999999999999999999999998899999999999999999999999999999666779
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHH
Q 021051 97 IVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVD 176 (318)
Q Consensus 97 ~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 176 (318)
.||+.|..+|+.++.+...+.+.+ +.+|+-..|+..+..++.++. |.+..... .....+.+.+|+++ .....+.
T Consensus 84 mvRhEAaealga~~~~~~~~~l~k-~~~dp~~~v~ETc~lAi~rle-~~~~~~~~---~~~~p~~SvdPa~p-~~~ssv~ 157 (289)
T KOG0567|consen 84 MVRHEAAEALGAIGDPESLEILTK-YIKDPCKEVRETCELAIKRLE-WKDIIDKI---ANSSPYISVDPAPP-ANLSSVH 157 (289)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHH-HhcCCccccchHHHHHHHHHH-Hhhccccc---cccCccccCCCCCc-cccccHH
Confidence 999999999999999999999999 559999999999999999998 88775542 33455677788766 2345688
Q ss_pred HHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHH
Q 021051 177 MLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVR 256 (318)
Q Consensus 177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr 256 (318)
.|...|.+.+.+.+.|+.|+..|+++|+++++..|.+.+.+++...|.++..++|++..+.++|.|.+.|.+.+++|.||
T Consensus 158 ~lr~~lld~t~~l~~Ry~amF~LRn~g~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVR 237 (289)
T KOG0567|consen 158 ELRAELLDETKPLFERYRAMFYLRNIGTEEAINALIDGLADDSALFRHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVR 237 (289)
T ss_pred HHHHHHHhcchhHHHHHhhhhHhhccCcHHHHHHHHHhcccchHHHHHHHHHHHhhccchhhhHHHHHHHHhhhcchHHH
Confidence 88888889998888999999999999999999999999999999999999999999999999999999999988999999
Q ss_pred HHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051 257 HEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL 309 (318)
Q Consensus 257 ~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~ 309 (318)
..+++|||.|+++++++.|.++++|+++.||..|..||..+.+.++.+ |+|.
T Consensus 238 hEaAeALGaIa~e~~~~vL~e~~~D~~~vv~esc~valdm~eyens~~-~ey~ 289 (289)
T KOG0567|consen 238 HEAAEALGAIADEDCVEVLKEYLGDEERVVRESCEVALDMLEYENSKE-FEYA 289 (289)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhcccc-cccC
Confidence 999999999999999999999999999999999999999999999988 9983
No 2
>PRK09687 putative lyase; Provisional
Probab=100.00 E-value=9.7e-31 Score=223.90 Aligned_cols=247 Identities=18% Similarity=0.121 Sum_probs=220.8
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----CcHHHHHH
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDA-----EAIPALEA 87 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~ 87 (318)
....+.+.|...|.|++. .+|..|++.|+.++++.+.+.+.+++.++++.+|..++++||+++.+ .+++.|..
T Consensus 20 ~~~~~~~~L~~~L~d~d~--~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~ 97 (280)
T PRK09687 20 CKKLNDDELFRLLDDHNS--LKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNN 97 (280)
T ss_pred HhhccHHHHHHHHhCCCH--HHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHH
Confidence 456688999999999987 99999999999999999999999999999999999999999999964 37888887
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCCCCc------HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051 88 VLNDFSLHPIVRHEAAEALGAIGLESN------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161 (318)
Q Consensus 88 ~l~~~~~~~~vR~~a~~~L~~~~~~~~------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~ 161 (318)
++. .|+++.||..|+.+||.++.... ++.+.. +..|+++.||..++.+|+.++
T Consensus 98 l~~-~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~-~~~D~~~~VR~~a~~aLg~~~------------------- 156 (280)
T PRK09687 98 LAL-EDKSACVRASAINATGHRCKKNPLYSPKIVEQSQI-TAFDKSTNVRFAVAFALSVIN------------------- 156 (280)
T ss_pred HHh-cCCCHHHHHHHHHHHhcccccccccchHHHHHHHH-HhhCCCHHHHHHHHHHHhccC-------------------
Confidence 744 28999999999999999975433 566666 567999999999999999877
Q ss_pred ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchH
Q 021051 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS 239 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~ 239 (318)
++.+++.|+..+.++++. +|..|+.+||.++ ++.+.+.|...+.|.++.||..|+.+||+++++.++
T Consensus 157 ---------~~~ai~~L~~~L~d~~~~--VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~~~av 225 (280)
T PRK09687 157 ---------DEAAIPLLINLLKDPNGD--VRNWAAFALNSNKYDNPDIREAFVAMLQDKNEEIRIEAIIGLALRKDKRVL 225 (280)
T ss_pred ---------CHHHHHHHHHHhcCCCHH--HHHHHHHHHhcCCCCCHHHHHHHHHHhcCCChHHHHHHHHHHHccCChhHH
Confidence 345899999999988875 5999999999875 678999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhc-CCCHHHHHHHHHHHHhc
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAK-DPEPIVSQSCEVALSML 297 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~-~~~~~vr~~a~~aL~~l 297 (318)
|.|++.+++. + +|..++.+||.+|++.+++.|.++++ ++++.|+..|.++|.++
T Consensus 226 ~~Li~~L~~~--~--~~~~a~~ALg~ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~~~~ 280 (280)
T PRK09687 226 SVLIKELKKG--T--VGDLIIEAAGELGDKTLLPVLDTLLYKFDDNEIITKAIDKLKRS 280 (280)
T ss_pred HHHHHHHcCC--c--hHHHHHHHHHhcCCHhHHHHHHHHHhhCCChhHHHHHHHHHhcC
Confidence 9999999875 4 78999999999999999999999987 78999999999999763
No 3
>PRK09687 putative lyase; Provisional
Probab=99.96 E-value=1e-26 Score=199.20 Aligned_cols=229 Identities=21% Similarity=0.176 Sum_probs=201.1
Q ss_pred cCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC-----cHHHHH
Q 021051 45 LKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES-----NIPLLK 119 (318)
Q Consensus 45 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~-----~~~~L~ 119 (318)
....-..+.|.+.|.|++..+|..++++|+.++...+.+.+..++. ++++.+|..++.+|+.++.+. +++.|.
T Consensus 19 ~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~--~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~ 96 (280)
T PRK09687 19 QCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQDVFRLAIELCS--SKNPIERDIGADILSQLGMAKRCQDNVFNILN 96 (280)
T ss_pred HHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcchHHHHHHHHHh--CCCHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 3344678999999999999999999999999999899999999988 899999999999999999754 788888
Q ss_pred hhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHH
Q 021051 120 NSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFAL 199 (318)
Q Consensus 120 ~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L 199 (318)
..+.+|+++.||..++.+|+.++. .. ..+ ....++.+...+.|+++. ||..++.+|
T Consensus 97 ~l~~~D~d~~VR~~A~~aLG~~~~-~~----------------~~~-----~~~a~~~l~~~~~D~~~~--VR~~a~~aL 152 (280)
T PRK09687 97 NLALEDKSACVRASAINATGHRCK-KN----------------PLY-----SPKIVEQSQITAFDKSTN--VRFAVAFAL 152 (280)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccc-cc----------------ccc-----chHHHHHHHHHhhCCCHH--HHHHHHHHH
Confidence 866899999999999999998760 00 000 123567777888888776 599999999
Q ss_pred HhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 021051 200 RNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE 277 (318)
Q Consensus 200 ~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~ 277 (318)
++++++.+++.|..+++|+++.||..|+.+||.++ ++.+.+.|+..+.|. ++.||..|+++||+++++.+++.|.+
T Consensus 153 g~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D~--~~~VR~~A~~aLg~~~~~~av~~Li~ 230 (280)
T PRK09687 153 SVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQDK--NEEIRIEAIIGLALRKDKRVLSVLIK 230 (280)
T ss_pred hccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCC--ChHHHHHHHHHHHccCChhHHHHHHH
Confidence 99999999999999999999999999999999985 678999999999987 89999999999999999999999999
Q ss_pred hhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 278 FAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 278 ~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
.+++++ ++..++.||++++.+.+.
T Consensus 231 ~L~~~~--~~~~a~~ALg~ig~~~a~ 254 (280)
T PRK09687 231 ELKKGT--VGDLIIEAAGELGDKTLL 254 (280)
T ss_pred HHcCCc--hHHHHHHHHHhcCCHhHH
Confidence 999866 788999999999987653
No 4
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.94 E-value=4.4e-25 Score=217.83 Aligned_cols=271 Identities=24% Similarity=0.222 Sum_probs=197.7
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCC-CCcHHHHHHhh
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQD-AEAIPALEAVL 89 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 89 (318)
+.+....++.|.+.|.|+++ .+|..|+..|+.++.+.+++.|.++|+|+++.||..|+.+|+++.. ....+.|...|
T Consensus 616 ~~l~~~~~~~L~~~L~D~d~--~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L 693 (897)
T PRK13800 616 LALDAPSVAELAPYLADPDP--GVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAPALRDHL 693 (897)
T ss_pred HhccchhHHHHHHHhcCCCH--HHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence 34666788999999999998 9999999999999999999999999999999999999999998853 24567888888
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC-CCC-
Q 021051 90 NDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD-PAA- 167 (318)
Q Consensus 90 ~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~- 167 (318)
. ++++.||..|+.+|+.++... ...|.+ ++.|+++.||..++.+|+.+.. ...+...+.+....... .+.
T Consensus 694 ~--~~d~~VR~~A~~aL~~~~~~~-~~~l~~-~L~D~d~~VR~~Av~aL~~~~~----~~~l~~~l~D~~~~VR~~aa~a 765 (897)
T PRK13800 694 G--SPDPVVRAAALDVLRALRAGD-AALFAA-ALGDPDHRVRIEAVRALVSVDD----VESVAGAATDENREVRIAVAKG 765 (897)
T ss_pred c--CCCHHHHHHHHHHHHhhccCC-HHHHHH-HhcCCCHHHHHHHHHHHhcccC----cHHHHHHhcCCCHHHHHHHHHH
Confidence 8 899999999999999887543 356666 5689999999999999997651 11111111111110000 000
Q ss_pred --CCC--CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhH-HHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHH
Q 021051 168 --PAS--SCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEA-VSAIIDSLGATSALLKHEVAYVLGQLQNKAASAAL 242 (318)
Q Consensus 168 --~~~--~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~-~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L 242 (318)
.+. .....+.|..++.|+++. +|..|+.+|+.++.... ...+...+.|++|.||..|+.+|+.++.+++++.|
T Consensus 766 L~~~~~~~~~~~~~L~~ll~D~d~~--VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~~~a~~~L 843 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTGDPDPL--VRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAADVAVPAL 843 (897)
T ss_pred HHHhccccchhHHHHHHHhcCCCHH--HHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccccchHHHH
Confidence 001 112356677777766644 47777777777776543 35667777777777777777777777777777777
Q ss_pred HHHHhccCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 243 SDVLRNVNEHPMVRHEAAEALGSI-ADDQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 243 ~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
..++.|+ ++.||.+|+++|+.+ +++.+.+.|..+++|++..||.+|..||.
T Consensus 844 ~~~L~D~--~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 844 VEALTDP--HLDVRKAAVLALTRWPGDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred HHHhcCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 7777776 777777777777777 46667777777777777777777777775
No 5
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.93 E-value=7e-24 Score=209.33 Aligned_cols=238 Identities=22% Similarity=0.184 Sum_probs=172.0
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF 92 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 92 (318)
++..++.|.+.|.|+++ .+|..|+..|+.+.. ....+.|...|+++++.||..|+.+|+.++.. ....|...+.
T Consensus 650 ~~~~~~~L~~aL~D~d~--~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~-- 724 (897)
T PRK13800 650 PPGFGPALVAALGDGAA--AVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLRALRAG-DAALFAAALG-- 724 (897)
T ss_pred chhHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHHhhccC-CHHHHHHHhc--
Confidence 45677888888888876 888888888887743 23456777778888888888888888877653 3456677777
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc--CccccccccCCCCcccCC-C---
Q 021051 93 SLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS--GSDGSSMTERSPFMSVDP-A--- 166 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~--~~~~~~~l~~~~~~~~~~-~--- 166 (318)
|+++.||..|+.+|+.++.. +.|.. +++|+++.||..++.+|+.+++ ... .+.+..++.+.+...... .
T Consensus 725 D~d~~VR~~Av~aL~~~~~~---~~l~~-~l~D~~~~VR~~aa~aL~~~~~-~~~~~~~~L~~ll~D~d~~VR~aA~~aL 799 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDV---ESVAG-AATDENREVRIAVAKGLATLGA-GGAPAGDAVRALTGDPDPLVRAAALAAL 799 (897)
T ss_pred CCCHHHHHHHHHHHhcccCc---HHHHH-HhcCCCHHHHHHHHHHHHHhcc-ccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence 78888888888888877543 33455 4567777777777777777651 111 011222222211100000 0
Q ss_pred CCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhcc-CCcchHHHHHH
Q 021051 167 APASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQL-QNKAASAALSD 244 (318)
Q Consensus 167 ~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~-~~~~~~~~L~~ 244 (318)
...+.. ...+.+...+.++++. +|..|+.+|+.++.+++++.|..+|+|+++.||..|+.+|+.+ +++.+.+.|..
T Consensus 800 g~~g~~~~~~~~l~~aL~d~d~~--VR~~Aa~aL~~l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~~a~~~L~~ 877 (897)
T PRK13800 800 AELGCPPDDVAAATAALRASAWQ--VRQGAARALAGAAADVAVPALVEALTDPHLDVRKAAVLALTRWPGDPAARDALTT 877 (897)
T ss_pred HhcCCcchhHHHHHHHhcCCChH--HHHHHHHHHHhccccchHHHHHHHhcCCCHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 011122 2346788999888876 4999999999999999999999999999999999999999998 47789999999
Q ss_pred HHhccCCCHHHHHHHHHHHhc
Q 021051 245 VLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 245 ~l~~~~~~~~vr~~a~~aL~~ 265 (318)
.++|. ++.||..|.++|..
T Consensus 878 al~D~--d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 878 ALTDS--DADVRAYARRALAH 896 (897)
T ss_pred HHhCC--CHHHHHHHHHHHhh
Confidence 99987 99999999999863
No 6
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.89 E-value=8.8e-21 Score=169.63 Aligned_cols=244 Identities=21% Similarity=0.168 Sum_probs=215.4
Q ss_pred hhhHHHHHHhhc-CCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCC
Q 021051 15 PEMEKFLCDRLV-DPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFS 93 (318)
Q Consensus 15 ~~~~~~L~~~L~-~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~ 93 (318)
+..++.++..|. ++++ .++..++..+.....+..++.|++.|.|.++.+|..++.+||.++...+.+.|..+++ +
T Consensus 53 ~~a~~~L~~aL~~d~~~--ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~--~ 128 (410)
T TIGR02270 53 KAATELLVSALAEADEP--GRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLA--A 128 (410)
T ss_pred HhHHHHHHHHHhhCCCh--hHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhc--C
Confidence 457888899995 5555 8899999999888777779999999999999999999999999999999999999999 8
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCc
Q 021051 94 LHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCS 173 (318)
Q Consensus 94 ~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 173 (318)
+++.+|..++.+++..+ .+..+.+.. +++|+++.||..++.+|+.++ ...
T Consensus 129 ~~p~vR~aal~al~~r~-~~~~~~L~~-~L~d~d~~Vra~A~raLG~l~----------------------------~~~ 178 (410)
T TIGR02270 129 SEPPGRAIGLAALGAHR-HDPGPALEA-ALTHEDALVRAAALRALGELP----------------------------RRL 178 (410)
T ss_pred CChHHHHHHHHHHHhhc-cChHHHHHH-HhcCCCHHHHHHHHHHHHhhc----------------------------ccc
Confidence 99999999999999876 457788888 568999999999999999887 234
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP 253 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~ 253 (318)
..+.|...+.+.++.+ |..|+.+++.+|+..+...+.....+.....+..+..+++..+++.+++.|..+++++
T Consensus 179 a~~~L~~al~d~~~~V--R~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d~---- 252 (410)
T TIGR02270 179 SESTLRLYLRDSDPEV--RFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQAA---- 252 (410)
T ss_pred chHHHHHHHcCCCHHH--HHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcCh----
Confidence 6888998888888875 9999999999999999998888777777777777777888889999999999999875
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 254 MVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 254 ~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.+|..++.++|.+|++.+++.|+..+.++. +++.|..++++|..-
T Consensus 253 ~vr~~a~~AlG~lg~p~av~~L~~~l~d~~--~aR~A~eA~~~ItG~ 297 (410)
T TIGR02270 253 ATRREALRAVGLVGDVEAAPWCLEAMREPP--WARLAGEAFSLITGM 297 (410)
T ss_pred hhHHHHHHHHHHcCCcchHHHHHHHhcCcH--HHHHHHHHHHHhhCC
Confidence 399999999999999999999999998765 999999999999763
No 7
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.84 E-value=2e-18 Score=153.55 Aligned_cols=253 Identities=26% Similarity=0.296 Sum_probs=227.4
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCC
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLH 95 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 95 (318)
...+.+.+.+.+++. .+|..|...++.++.+++++.+...+.|.++.+|..|+.+||.++.+.+++.|++++.+ +++
T Consensus 43 ~~~~~~~~~l~~~~~--~vr~~aa~~l~~~~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~a~~~li~~l~~-d~~ 119 (335)
T COG1413 43 EAADELLKLLEDEDL--LVRLSAAVALGELGSEEAVPLLRELLSDEDPRVRDAAADALGELGDPEAVPPLVELLEN-DEN 119 (335)
T ss_pred hhHHHHHHHHcCCCH--HHHHHHHHHHhhhchHHHHHHHHHHhcCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc-CCc
Confidence 578899999999965 99999999999999999999999999999999999999999999999999999999995 799
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCC----------H--HHHHHHHHHHHHHHhhhccCccccccccCCCCccc
Q 021051 96 PIVRHEAAEALGAIGLESNIPLLKNSLVSDPA----------Q--EVRETCELALERIEKLKASGSDGSSMTERSPFMSV 163 (318)
Q Consensus 96 ~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~----------~--~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (318)
..||..++.+|+.++++..+..+.. ..+++. + .+|..++.+++.++
T Consensus 120 ~~vR~~aa~aL~~~~~~~a~~~l~~-~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~--------------------- 177 (335)
T COG1413 120 EGVRAAAARALGKLGDERALDPLLE-ALQDEDSGSAAAALDAALLDVRAAAAEALGELG--------------------- 177 (335)
T ss_pred HhHHHHHHHHHHhcCchhhhHHHHH-HhccchhhhhhhhccchHHHHHHHHHHHHHHcC---------------------
Confidence 9999999999999999998888888 445544 2 58999999999887
Q ss_pred CCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHH
Q 021051 164 DPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD--EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAA 241 (318)
Q Consensus 164 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~ 241 (318)
++...+.+...+.+.... +|..|..+|+.++.. ...+.+...+.+.++.+|..++.+||.++.....+.
T Consensus 178 -------~~~~~~~l~~~l~~~~~~--vr~~Aa~aL~~~~~~~~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~~~~~~ 248 (335)
T COG1413 178 -------DPEAIPLLIELLEDEDAD--VRRAAASALGQLGSENVEAADLLVKALSDESLEVRKAALLALGEIGDEEAVDA 248 (335)
T ss_pred -------ChhhhHHHHHHHhCchHH--HHHHHHHHHHHhhcchhhHHHHHHHHhcCCCHHHHHHHHHHhcccCcchhHHH
Confidence 345788899999888875 599999999999887 677889999999999999999999999999999999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+...+.+. ++.++..+...++..+.......+...+.+....++..+..++..++......
T Consensus 249 l~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 309 (335)
T COG1413 249 LAKALEDE--DVILALLAAAALGALDLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAVA 309 (335)
T ss_pred HHHHHhcc--chHHHHHHHHHhcccCchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchHH
Confidence 99999987 89999999999998877777888888888888899999999999988876644
No 8
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=99.82 E-value=3.9e-18 Score=152.66 Aligned_cols=232 Identities=18% Similarity=0.061 Sum_probs=199.8
Q ss_pred HHHHH-HHHHhccCCCChHHHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 021051 34 ERFRA-LFSLRNLKGPGPRDALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL 111 (318)
Q Consensus 34 ~r~~A-~~~l~~~~~~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~ 111 (318)
.|..+ +..|...+ +.+++.++..| .++++.++..++.++........++.|.+.+. +.++.||..++++|+.+++
T Consensus 39 eRL~AhLdgL~~~G-~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~--d~~~~vr~aaa~ALg~i~~ 115 (410)
T TIGR02270 39 ERLLAHVDGLVLAG-KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQ--AGPEGLCAGIQAALGWLGG 115 (410)
T ss_pred HHHHHHHHHHHHhh-HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCc
Confidence 34443 34444445 68999999999 57889999999999988777666999999999 8999999999999999999
Q ss_pred CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHH
Q 021051 112 ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191 (318)
Q Consensus 112 ~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 191 (318)
+...+.|.. +++++++.||..++.+++... ....+.+..++.++++. |
T Consensus 116 ~~a~~~L~~-~L~~~~p~vR~aal~al~~r~-----------------------------~~~~~~L~~~L~d~d~~--V 163 (410)
T TIGR02270 116 RQAEPWLEP-LLAASEPPGRAIGLAALGAHR-----------------------------HDPGPALEAALTHEDAL--V 163 (410)
T ss_pred hHHHHHHHH-HhcCCChHHHHHHHHHHHhhc-----------------------------cChHHHHHHHhcCCCHH--H
Confidence 999999999 668999999999998888654 22477899999877766 5
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhh
Q 021051 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQS 271 (318)
Q Consensus 192 r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~ 271 (318)
|..|+.+||.++.....+.|...+.|.++.||..|+.+++.++.+.+.+.+..+.... ++.++..+...++..+++.+
T Consensus 164 ra~A~raLG~l~~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~--g~~~~~~l~~~lal~~~~~a 241 (410)
T TIGR02270 164 RAAALRALGELPRRLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLE--GGPHRQRLLVLLAVAGGPDA 241 (410)
T ss_pred HHHHHHHHHhhccccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhcc--CccHHHHHHHHHHhCCchhH
Confidence 9999999999999999999999999999999999999999999999999999877665 66677777777877799999
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 272 IGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 272 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++.|..+++++. +|..++.+++.++.+.+..
T Consensus 242 ~~~L~~ll~d~~--vr~~a~~AlG~lg~p~av~ 272 (410)
T TIGR02270 242 QAWLRELLQAAA--TRREALRAVGLVGDVEAAP 272 (410)
T ss_pred HHHHHHHhcChh--hHHHHHHHHHHcCCcchHH
Confidence 999999999865 9999999999998887644
No 9
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=99.79 E-value=6e-17 Score=144.11 Aligned_cols=249 Identities=31% Similarity=0.349 Sum_probs=222.5
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhcc-CCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATK-DSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF 92 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 92 (318)
....++.+.+.|.+.++ .+|..|+..|+.++.+.+++.|++++. |.+..+|..++++|+.+++..++..+.+.+.
T Consensus 72 ~~~av~~l~~~l~d~~~--~vr~~a~~aLg~~~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a~~~l~~~l~-- 147 (335)
T COG1413 72 SEEAVPLLRELLSDEDP--RVRDAAADALGELGDPEAVPPLVELLENDENEGVRAAAARALGKLGDERALDPLLEALQ-- 147 (335)
T ss_pred hHHHHHHHHHHhcCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchhhhHHHHHHhc--
Confidence 46788999999999997 999999999999999999999999997 7999999999999999999999999999999
Q ss_pred CCC------------HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051 93 SLH------------PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF 160 (318)
Q Consensus 93 ~~~------------~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~ 160 (318)
++. ..+|..++.+|+.++++...+.+.. +..+.+..||..++.+|+.++.
T Consensus 148 ~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~~~~~~~l~~-~l~~~~~~vr~~Aa~aL~~~~~----------------- 209 (335)
T COG1413 148 DEDSGSAAAALDAALLDVRAAAAEALGELGDPEAIPLLIE-LLEDEDADVRRAAASALGQLGS----------------- 209 (335)
T ss_pred cchhhhhhhhccchHHHHHHHHHHHHHHcCChhhhHHHHH-HHhCchHHHHHHHHHHHHHhhc-----------------
Confidence 444 3689999999999999999999999 6689999999999999999881
Q ss_pred cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHH
Q 021051 161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASA 240 (318)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~ 240 (318)
. .......+...+.+++..+ |..++.+++.++..+....+...+.+.++.++..+..+++..+......
T Consensus 210 ~---------~~~~~~~l~~~~~~~~~~v--r~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (335)
T COG1413 210 E---------NVEAADLLVKALSDESLEV--RKAALLALGEIGDEEAVDALAKALEDEDVILALLAAAALGALDLAEAAL 278 (335)
T ss_pred c---------hhhHHHHHHHHhcCCCHHH--HHHHHHHhcccCcchhHHHHHHHHhccchHHHHHHHHHhcccCchhhHH
Confidence 0 0135678888888888775 9999999999999999999999999999999999999999887777778
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 241 ALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
.+...+.+. .+.+|..+..+++.++.......+.....+.+..++..+...+..+
T Consensus 279 ~l~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 333 (335)
T COG1413 279 PLLLLLIDE--ANAVRLEAALALGQIGQEKAVAALLLALEDGDADVRKAALILLEGI 333 (335)
T ss_pred HHHHHhhcc--hhhHHHHHHHHHHhhcccchHHHHHHHhcCCchhhHHHHHHHHHhh
Confidence 888888876 8999999999999999999999999999999888888888776654
No 10
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=7.6e-17 Score=144.67 Aligned_cols=270 Identities=22% Similarity=0.280 Sum_probs=216.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC------
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~------ 78 (318)
...+.+.+.++++ ..+..+...+.++.+ ...++.+.+.|. +.++.++..|+|+|..+..
T Consensus 68 ~~~~~~~~~S~~~--~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDP--QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQT 145 (514)
T ss_pred hHHHHHHHhCCCH--HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhc
Confidence 5567777888876 778888888776643 256888888885 6779999999999988763
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCH-HHHHHHHHHHHHH
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQ-EVRETCELALERI 141 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~-~vr~~a~~aL~~~ 141 (318)
..++|.|..++. +++..|+..|+.+||++.. ...++.|...+ ..+++ ...+.+.|+|.++
T Consensus 146 ~~vv~agavp~fi~Ll~--s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l-~~~~~~~~lRn~tW~LsNl 222 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLS--SPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLL-NKSDKLSMLRNATWTLSNL 222 (514)
T ss_pred cccccCCchHHHHHHhc--CCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHh-ccccchHHHHHHHHHHHHH
Confidence 468999999999 8999999999999999852 34677777744 44444 7888999999998
Q ss_pred HhhhccCccccccccCCCCcccCCCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHH
Q 021051 142 EKLKASGSDGSSMTERSPFMSVDPAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVS 209 (318)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~ 209 (318)
.. ..+|.+++. -...+|.|..++.+.+..+ ...|.+++..+.+ ...++
T Consensus 223 cr------------------gk~P~P~~~~v~~iLp~L~~ll~~~D~~V--l~Da~WAlsyLsdg~ne~iq~vi~~gvv~ 282 (514)
T KOG0166|consen 223 CR------------------GKNPSPPFDVVAPILPALLRLLHSTDEEV--LTDACWALSYLTDGSNEKIQMVIDAGVVP 282 (514)
T ss_pred Hc------------------CCCCCCcHHHHHHHHHHHHHHHhcCCHHH--HHHHHHHHHHHhcCChHHHHHHHHccchH
Confidence 71 112333321 2457899999999998875 8999999998753 26678
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccC-----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA----------- 267 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------- 267 (318)
.|+++|.+.++.++..|+.++|.+- +..++|.|..++...+ ...+|.+|++.+++|.
T Consensus 283 ~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~-~~~ikkEAcW~iSNItAG~~~qiqaVi 361 (514)
T KOG0166|consen 283 RLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP-KESIKKEACWTISNITAGNQEQIQAVI 361 (514)
T ss_pred HHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc-chhHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 8999999999999999999999964 3567899999998432 4569999999999985
Q ss_pred ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcccccC
Q 021051 268 DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQA 313 (318)
Q Consensus 268 ~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~~~ 313 (318)
+.+.+|.|..++...+-.+|++|+||++++....+.++..|++.+.
T Consensus 362 da~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~g 407 (514)
T KOG0166|consen 362 DANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQG 407 (514)
T ss_pred HcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcC
Confidence 3457899999999988999999999999999999989888887653
No 11
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=6.4e-16 Score=138.81 Aligned_cols=278 Identities=19% Similarity=0.196 Sum_probs=213.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
..++.+.+.|...+. ...++.|+++|.++.. ..+++.+++++.+++..|+..|+|+||.+..
T Consensus 109 G~v~~lV~~l~~~~~-~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~R 187 (514)
T KOG0166|consen 109 GVVPRLVEFLSRDDN-PTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCR 187 (514)
T ss_pred CcHHHHHHHHccCCC-hhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHH
Confidence 578889999975542 3899999999999865 4689999999999999999999999999764
Q ss_pred -----CCcHHHHHHhhhcCCCCH-HHHHHHHHHHHhcC---CC--------CcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 79 -----AEAIPALEAVLNDFSLHP-IVRHEAAEALGAIG---LE--------SNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~-~vR~~a~~~L~~~~---~~--------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
..+++.|+.++. .+++ ...+.+.++|+++. +| ..+|.|.. +..+.|+.|...+.|++..+
T Consensus 188 d~vl~~g~l~pLl~~l~--~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~-ll~~~D~~Vl~Da~WAlsyL 264 (514)
T KOG0166|consen 188 DYVLSCGALDPLLRLLN--KSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLR-LLHSTDEEVLTDACWALSYL 264 (514)
T ss_pred HHHHhhcchHHHHHHhc--cccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHH
Confidence 257888999998 4443 55667777777664 22 25788888 67899999999999999987
Q ss_pred HhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CC---------hhHHHH
Q 021051 142 EKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GG---------DEAVSA 210 (318)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~---------~~~~~~ 210 (318)
. +++.+. ..+ ..+...++.|+++|.+++..+ +.-|+.++|++ |+ ..+++.
T Consensus 265 s--dg~ne~-iq~--------------vi~~gvv~~LV~lL~~~~~~v--~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~ 325 (514)
T KOG0166|consen 265 T--DGSNEK-IQM--------------VIDAGVVPRLVDLLGHSSPKV--VTPALRAIGNIVTGSDEQTQVVINSGALPV 325 (514)
T ss_pred h--cCChHH-HHH--------------HHHccchHHHHHHHcCCCccc--ccHHHhhccceeeccHHHHHHHHhcChHHH
Confidence 6 111111 000 012457899999999999886 88999999996 32 367788
Q ss_pred HHHHhC-CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch------
Q 021051 211 IIDSLG-ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD------ 269 (318)
Q Consensus 211 l~~~l~-d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~------ 269 (318)
|..++. ++...+|.+|++.+..+.. ...+|.|+.+++.. +-.+|++|+++++++. ++
T Consensus 326 l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAawaIsN~ts~g~~~qi~yL 403 (514)
T KOG0166|consen 326 LSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAAWAISNLTSSGTPEQIKYL 403 (514)
T ss_pred HHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 888887 5566699999999999753 46789999999987 7899999999999974 33
Q ss_pred ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchh----hhcccccCCCCCC
Q 021051 270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKS----FEYLFMQAPLMQV 318 (318)
Q Consensus 270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~----~~~~~~~~~~~~~ 318 (318)
++++.+..++.-.+..+-..+..+|+.+......+. -.|..|+++|+|.
T Consensus 404 v~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl 459 (514)
T KOG0166|consen 404 VEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL 459 (514)
T ss_pred HHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh
Confidence 356667777766777778888888888765544342 3577899999874
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=9.5e-14 Score=142.33 Aligned_cols=266 Identities=18% Similarity=0.135 Sum_probs=213.5
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
..++.|+++|.+++. ..+..|++.++.+.. ..+++.|+++|.+++..+|..|+|+|+.+..
T Consensus 446 ggIp~LV~LL~s~s~--~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir 523 (2102)
T PLN03200 446 EGVQLLISLLGLSSE--QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIR 523 (2102)
T ss_pred CcHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence 378899999999886 899999999977643 4789999999999999999999999998652
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
..+++.|+++|. +.++.++..|+.+|.++ ++.+.++.+.. +...+++.++..++.+++++-.-.+..+
T Consensus 524 ~iV~~aGAIppLV~LL~--sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~-LLlsdd~~~~~~aL~vLgnIlsl~~~~d- 599 (2102)
T PLN03200 524 ACVESAGAVPALLWLLK--NGGPKGQEIAAKTLTKLVRTADAATISQLTA-LLLGDLPESKVHVLDVLGHVLSVASLED- 599 (2102)
T ss_pred HHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhccchhHHHHHHH-HhcCCChhHHHHHHHHHHHHHhhcchhH-
Confidence 367899999999 77899999999999887 56777888888 5567788999999999988751000000
Q ss_pred ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCC
Q 021051 151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATS 219 (318)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~ 219 (318)
..... .....+++.|.+++.+++..+ +..|+++|.++.. .++++.++.++.+.+
T Consensus 600 ---------~~~~g----~~~~ggL~~Lv~LL~sgs~~i--kk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 600 ---------LVREG----SAANDALRTLIQLLSSSKEET--QEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT 664 (2102)
T ss_pred ---------HHHHh----hhccccHHHHHHHHcCCCHHH--HHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC
Confidence 00000 001347999999999988775 8999999988743 357889999999999
Q ss_pred HHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----------ChhhHHHHHH
Q 021051 220 ALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA----------DDQSIGLLKE 277 (318)
Q Consensus 220 ~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----------~~~~~~~L~~ 277 (318)
..++.+++++|+.+.. ..+++.|++++.+. +..++..++.+|+++- ..+.++.|.+
T Consensus 665 ~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~--d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~ 742 (2102)
T PLN03200 665 EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS--SIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTR 742 (2102)
T ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC--ChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHH
Confidence 9999999999887641 35789999999987 8899999999999874 2346899999
Q ss_pred hhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 278 FAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 278 ~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++++.++.+|..|.+||.++-.+.+..
T Consensus 743 lLr~G~~~~k~~Aa~AL~~L~~~~~~~ 769 (2102)
T PLN03200 743 VLREGTLEGKRNAARALAQLLKHFPVD 769 (2102)
T ss_pred HHHhCChHHHHHHHHHHHHHHhCCChh
Confidence 999999999999999999887776644
No 13
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.61 E-value=2.9e-14 Score=120.14 Aligned_cols=270 Identities=20% Similarity=0.251 Sum_probs=204.9
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC-----
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD----- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~----- 78 (318)
-.+.|...|.+++- +....|..-+.++-+ ...++-+++++ .......+..|+|+|..+..
T Consensus 72 elp~lt~~l~SdDi--e~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 72 ELPQLTQQLFSDDI--EQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred hhHHHHHHHhhhHH--HHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence 45778888888875 788888887776643 24678888888 56677899999999988763
Q ss_pred ------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-C----------CcHHHHHhhhccC-CCHHHHHHHHHHHHH
Q 021051 79 ------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-E----------SNIPLLKNSLVSD-PAQEVRETCELALER 140 (318)
Q Consensus 79 ------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-~----------~~~~~L~~~l~~d-~~~~vr~~a~~aL~~ 140 (318)
..++|.+.++|. +.+..||..++++||++.. . .+++.+..++.+. .+-...+.+-|.|.+
T Consensus 150 TkvVvd~~AVPlfiqlL~--s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLS--STEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred eEEEEeCCchHHHHHHHc--CchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 368999999999 8999999999999999852 2 3566666644322 234777888999998
Q ss_pred HHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHH
Q 021051 141 IEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAV 208 (318)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~ 208 (318)
+.+ +. +|-+.. .-.+++|.|.+++..-++++ -..|.+++..+.+. ...
T Consensus 228 lcR---Gk---------------nP~P~w~~isqalpiL~KLiys~D~ev--lvDA~WAiSYlsDg~~E~i~avld~g~~ 287 (526)
T COG5064 228 LCR---GK---------------NPPPDWSNISQALPILAKLIYSRDPEV--LVDACWAISYLSDGPNEKIQAVLDVGIP 287 (526)
T ss_pred hhC---CC---------------CCCCchHHHHHHHHHHHHHHhhcCHHH--HHHHHHHHHHhccCcHHHHHHHHhcCCc
Confidence 871 11 111100 01457899999998888875 78899998887542 333
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----------
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---------- 267 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---------- 267 (318)
+.|.++|.+++..+...|+...|.+-. -.+++.+..++.++ ...+|++|++.+.+|.
T Consensus 288 ~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~--ke~irKEaCWTiSNITAGnteqiqav 365 (526)
T COG5064 288 GRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP--KENIRKEACWTISNITAGNTEQIQAV 365 (526)
T ss_pred HHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh--hhhhhhhhheeecccccCCHHHHHHH
Confidence 567889999999999999999998742 34678889999987 5689999999999984
Q ss_pred -ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch--hhhccccc
Q 021051 268 -DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK--SFEYLFMQ 312 (318)
Q Consensus 268 -~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~--~~~~~~~~ 312 (318)
+.+.+|.|++++...+-.+|++|+||+.+..++.... .+.|++-|
T Consensus 366 id~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~q 413 (526)
T COG5064 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQ 413 (526)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHc
Confidence 3456899999999999999999999999987765432 26666654
No 14
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.57 E-value=6.8e-13 Score=136.19 Aligned_cols=253 Identities=20% Similarity=0.218 Sum_probs=206.6
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
+.++.|+.+|...+. +++..+++.+..+.. ...++.|+++|++.+..+|..+++.++.+..
T Consensus 404 daik~LV~LL~~~~~--evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr 481 (2102)
T PLN03200 404 EAKKVLVGLITMATA--DVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK 481 (2102)
T ss_pred cchhhhhhhhccCCH--HHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 455667777777776 899999999876653 3589999999999999999999999987642
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..++|.|.++|. +++..+|..|+.+|+++. ..+.++.|.+ ++++.++.++..++++|.++.
T Consensus 482 ~aIieaGaIP~LV~LL~--s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~-LL~sgd~~~q~~Aa~AL~nLi 558 (2102)
T PLN03200 482 WAITAAGGIPPLVQLLE--TGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLW-LLKNGGPKGQEIAAKTLTKLV 558 (2102)
T ss_pred HHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHH
Confidence 367999999999 789999999999999875 2467888999 567889999999999999886
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--------------ChhHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--------------GDEAV 208 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--------------~~~~~ 208 (318)
. .+ +...++.+..++..+++.. +..++..++++- ...++
T Consensus 559 ~--~~-----------------------d~~~I~~Lv~LLlsdd~~~--~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL 611 (2102)
T PLN03200 559 R--TA-----------------------DAATISQLTALLLGDLPES--KVHVLDVLGHVLSVASLEDLVREGSAANDAL 611 (2102)
T ss_pred h--cc-----------------------chhHHHHHHHHhcCCChhH--HHHHHHHHHHHHhhcchhHHHHHhhhccccH
Confidence 0 11 1235788888898877765 777788876651 23588
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---C------
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---D------ 268 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~------ 268 (318)
+.|.+++++.+..++..|+.+|..+.. .++++.|+.++.+. +..++..++++|+.+. .
T Consensus 612 ~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 612 RTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999988743 45789999999987 7899999999998874 1
Q ss_pred ---hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 269 ---DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 269 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.++++.|.+++++++..++..|..+|.++-....
T Consensus 690 ~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e 726 (2102)
T PLN03200 690 YAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE 726 (2102)
T ss_pred HHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch
Confidence 2468999999999999999999999998866543
No 15
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=99.53 E-value=6.8e-13 Score=108.30 Aligned_cols=218 Identities=19% Similarity=0.286 Sum_probs=173.9
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCC--CHHHHHHHHHHHhccCCCCcHHHHHHhhhc
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDS--SNLLAHEAAFALGQMQDAEAIPALEAVLND 91 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 91 (318)
.+.+++.+.+...++.. .-....+..|+.++..++++.|...+.|. .|.||..|..+||.++.+...+.+.++.+
T Consensus 34 ~~~~i~~i~ka~~d~s~--llkhe~ay~LgQ~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~~~~~~~~l~k~~~- 110 (289)
T KOG0567|consen 34 GPAAIKAITKAFIDDSA--LLKHELAYVLGQMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIGDPESLEILTKYIK- 110 (289)
T ss_pred ChHHHHHHHHhcccchh--hhccchhhhhhhhccchhhHHHHHHhcccccchHHHHHHHHHHHhhcchhhHHHHHHHhc-
Confidence 55678888888887764 66778999999999999999999999654 68999999999999999889999999997
Q ss_pred CCCCHHHHHHHHHHHHhcCCCC-----------------------cHHHHHhhhccCC-CHHHHHHHHHHHHHHHhhhcc
Q 021051 92 FSLHPIVRHEAAEALGAIGLES-----------------------NIPLLKNSLVSDP-AQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 92 ~~~~~~vR~~a~~~L~~~~~~~-----------------------~~~~L~~~l~~d~-~~~vr~~a~~aL~~~~~~~~~ 147 (318)
++-..||..+..++.++...+ .+..|...+.... .-.-|..+..+|.+++
T Consensus 111 -dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g----- 184 (289)
T KOG0567|consen 111 -DPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIG----- 184 (289)
T ss_pred -CCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccC-----
Confidence 899999998888887654211 1223333222111 1233445555555554
Q ss_pred CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCC--CCHHHHHH
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGA--TSALLKHE 225 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d--~~~~vr~~ 225 (318)
.++++..+.+.+.++..-+ |..+...+|++..+.+++.+++.|.+ ..+-||.+
T Consensus 185 -----------------------~EeaI~al~~~l~~~Salf--rhEvAfVfGQl~s~~ai~~L~k~L~d~~E~pMVRhE 239 (289)
T KOG0567|consen 185 -----------------------TEEAINALIDGLADDSALF--RHEVAFVFGQLQSPAAIPSLIKVLLDETEHPMVRHE 239 (289)
T ss_pred -----------------------cHHHHHHHHHhcccchHHH--HHHHHHHHhhccchhhhHHHHHHHHhhhcchHHHHH
Confidence 3567889999998885554 99999999999999999999998865 47899999
Q ss_pred HHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 226 VAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 226 a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
|+.+||.++++++++.|.+.+.|+ .+.||....-+|....
T Consensus 240 aAeALGaIa~e~~~~vL~e~~~D~--~~vv~esc~valdm~e 279 (289)
T KOG0567|consen 240 AAEALGAIADEDCVEVLKEYLGDE--ERVVRESCEVALDMLE 279 (289)
T ss_pred HHHHHHhhcCHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHH
Confidence 999999999999999999999987 8899998888876643
No 16
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.50 E-value=1.4e-12 Score=110.03 Aligned_cols=261 Identities=16% Similarity=0.182 Sum_probs=193.1
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
+...++.+++++.+..+ ....+.|.++|.++.+ ..++|.++++|.+.+..||..++|+||.+..+
T Consensus 112 daGvVpRfvefm~~~q~-~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~ 190 (526)
T COG5064 112 DAGVVPRFVEFMDEIQR-DMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190 (526)
T ss_pred hccccHHHHHHHHhcch-hHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchh
Confidence 34567888888865543 2688999999998865 46899999999999999999999999998642
Q ss_pred --------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----C------CcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051 80 --------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----E------SNIPLLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 80 --------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
.+.+.++.++..+..+-..-+.+-+.|++++. | .++|.|.+ |....|++|.--|.|++..
T Consensus 191 ~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~K-Liys~D~evlvDA~WAiSY 269 (526)
T COG5064 191 CRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAK-LIYSRDPEVLVDACWAISY 269 (526)
T ss_pred HHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHH-HHhhcCHHHHHHHHHHHHH
Confidence 56788888888333444666788888887752 2 36899999 7788999999999999997
Q ss_pred HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHH
Q 021051 141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVS 209 (318)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~ 209 (318)
+.+ +..+.... ..+......|+++|.+++..+ ..-|+..+|++-+ -.+++
T Consensus 270 lsD---g~~E~i~a--------------vld~g~~~RLvElLs~~sa~i--qtPalR~vGNIVTG~D~QTqviI~~G~L~ 330 (526)
T COG5064 270 LSD---GPNEKIQA--------------VLDVGIPGRLVELLSHESAKI--QTPALRSVGNIVTGSDDQTQVIINCGALK 330 (526)
T ss_pred hcc---CcHHHHHH--------------HHhcCCcHHHHHHhcCccccc--cCHHHHhhcCeeecCccceehheecccHH
Confidence 761 11110000 001224567999999988775 7888999998832 26778
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----C-----
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-----D----- 268 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----~----- 268 (318)
.+..+|+++...+|.+|++.+..+.. ...+|.|+.++... +-.+|++|++|+.+.. .
T Consensus 331 a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACWAisNatsgg~~~PD~ir 408 (526)
T COG5064 331 AFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACWAISNATSGGLNRPDIIR 408 (526)
T ss_pred HHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHHHHHhhhccccCCchHHH
Confidence 88888999988999999999998752 45689999999987 7899999999998853 2
Q ss_pred ----hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 269 ----DQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 269 ----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
.+++..|..++.--+..+-..+..++..+
T Consensus 409 yLv~qG~IkpLc~~L~~~dNkiiev~LD~~eni 441 (526)
T COG5064 409 YLVSQGFIKPLCDLLDVVDNKIIEVALDAIENI 441 (526)
T ss_pred HHHHccchhHHHHHHhccCccchhhhHHHHHHH
Confidence 24566677776643333434445555544
No 17
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2e-12 Score=118.55 Aligned_cols=291 Identities=21% Similarity=0.250 Sum_probs=204.0
Q ss_pred chhhccccCChhhHHHHHH----hhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC----CCHHHHHHHHHHH
Q 021051 5 DKFTNAFKSSPEMEKFLCD----RLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD----SSNLLAHEAAFAL 73 (318)
Q Consensus 5 ~~~~~~~~~~~~~~~~L~~----~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d----~~~~vr~~a~~aL 73 (318)
+.+++.+|...++...+.+ .|..... |.++.|...||-+.. .++...+..+|.. .+.+..-.|+++|
T Consensus 326 ~~iAN~fMh~GTT~D~FlR~NL~WlskAtN--WaKFtAtAsLGvIH~G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAl 403 (929)
T KOG2062|consen 326 TLIANAFMHAGTTSDTFLRNNLDWLSKATN--WAKFTATASLGVIHRGHENQAMKLLAPYLPKEAGEGSGYKEGGALYAL 403 (929)
T ss_pred HHHHHHHHhcCCcchHHHHhchhHHhhcch--HhhhhhhhhcceeeccccchHHHHhhhhCCccCCCCCCccccchhhhh
Confidence 4466677765555554433 3444443 799999999998743 4568888888844 4567778899999
Q ss_pred hccCC---CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhc
Q 021051 74 GQMQD---AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKA 146 (318)
Q Consensus 74 ~~~~~---~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~ 146 (318)
|-++. ....+.|.+.|++ .+++.||++++-.||-.+ +.+..+.+...+ ..++...-.+|..++|-++ ..
T Consensus 404 GLIhA~hG~~~~~yL~~~Lk~-~~~e~v~hG~cLGlGLa~mGSa~~eiYe~lKevL-y~D~AvsGEAAgi~MGl~m--lG 479 (929)
T KOG2062|consen 404 GLIHANHGRGITDYLLQQLKT-AENEVVRHGACLGLGLAGMGSANEEIYEKLKEVL-YNDSAVSGEAAGIAMGLLM--LG 479 (929)
T ss_pred hccccCcCccHHHHHHHHHHh-ccchhhhhhhhhhccchhcccccHHHHHHHHHHH-hccchhhhhHHHHhhhhHh--hC
Confidence 98763 3578999999994 678999999999887543 455778888844 4445566677888888776 11
Q ss_pred cCcc--ccccccC---CCCcccCCCC-------CCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHh--C--CChhHHH
Q 021051 147 SGSD--GSSMTER---SPFMSVDPAA-------PASSC-SSVDMLREVLLGEEKGMYERYAALFALRN--H--GGDEAVS 209 (318)
Q Consensus 147 ~~~~--~~~~l~~---~~~~~~~~~~-------~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~--~--~~~~~~~ 209 (318)
+... +.+++.. .......-+. .++.+ .+-+.+.+++.++++- .|+..+.+++- . |+..++.
T Consensus 480 t~~~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~dkdpi--lR~~Gm~t~alAy~GTgnnkair 557 (929)
T KOG2062|consen 480 TANQEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRDKDPI--LRYGGMYTLALAYVGTGNNKAIR 557 (929)
T ss_pred cCcHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcCCchh--hhhhhHHHHHHHHhccCchhhHH
Confidence 1111 1112210 0000000000 11223 3444555555666554 48877766643 2 4567888
Q ss_pred HHHHH-hCCCCHHHHHHHHHHHhcc--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhcc----CChhhHHHHHHhhcCC
Q 021051 210 AIIDS-LGATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSI----ADDQSIGLLKEFAKDP 282 (318)
Q Consensus 210 ~l~~~-l~d~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~~~ 282 (318)
.|++. .+|.+..||++|+.+||.+ ++++..+..+++|.+. -||.||+.++-+||-. |..+++..|..+..|+
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~ 636 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDP 636 (929)
T ss_pred HhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcCh
Confidence 88775 6899999999999999985 6889999999999864 3899999999999875 5788999999999999
Q ss_pred CHHHHHHHHHHHHhchhhhcch
Q 021051 283 EPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 283 ~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
...||+.|+.|++.|..+..++
T Consensus 637 ~~fVRQgAlIa~amIm~Q~t~~ 658 (929)
T KOG2062|consen 637 VDFVRQGALIALAMIMIQQTEQ 658 (929)
T ss_pred HHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999998776644
No 18
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.37 E-value=4.7e-12 Score=89.69 Aligned_cols=86 Identities=33% Similarity=0.517 Sum_probs=75.0
Q ss_pred HHHHHHHh-CCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC-CCHH
Q 021051 208 VSAIIDSL-GATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD-PEPI 285 (318)
Q Consensus 208 ~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~ 285 (318)
++.|.+.+ +++++.+|..++.+||+++++++++.|.++++++ ++.||..|+++|+.+|++++++.|.+++.+ ++..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~ 78 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLKDE--DPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEV 78 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHH
Confidence 46677777 8899999999999999999999999999999876 899999999999999999999999998766 5677
Q ss_pred HHHHHHHHHH
Q 021051 286 VSQSCEVALS 295 (318)
Q Consensus 286 vr~~a~~aL~ 295 (318)
||..|..+|+
T Consensus 79 vr~~a~~aL~ 88 (88)
T PF13646_consen 79 VREAAAEALG 88 (88)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHhhcC
Confidence 7999998885
No 19
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=99.33 E-value=4.1e-12 Score=90.00 Aligned_cols=86 Identities=43% Similarity=0.543 Sum_probs=52.0
Q ss_pred HHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHH
Q 021051 52 DALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEV 130 (318)
Q Consensus 52 ~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~v 130 (318)
+.|++.+ +++++.+|..++++||+++...+++.|.+++. |+++.||..|+.+|+.+|+++.++.|.+.+.++++..|
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~--d~~~~vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~v 79 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGDPEAIPALIELLK--DEDPMVRRAAARALGRIGDPEAIPALIKLLQDDDDEVV 79 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTHHHHHHHHHHHHT--SSSHHHHHHHHHHHHCCHHHHTHHHHHHHHTC-SSHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHc--CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCcHHH
Confidence 4555555 56666666666666666665566666666665 56666666666666666666666666664444455555
Q ss_pred HHHHHHHHH
Q 021051 131 RETCELALE 139 (318)
Q Consensus 131 r~~a~~aL~ 139 (318)
|..++.+|+
T Consensus 80 r~~a~~aL~ 88 (88)
T PF13646_consen 80 REAAAEALG 88 (88)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhcC
Confidence 666666553
No 20
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=5.9e-10 Score=95.25 Aligned_cols=258 Identities=18% Similarity=0.169 Sum_probs=191.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC--------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-------- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------- 78 (318)
.++.++++-++++. .+|..+..+|-.+-+ ...++.|..+++..++.+|..+..+++.++.
T Consensus 168 aL~pltrLakskdi--rvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~L 245 (550)
T KOG4224|consen 168 ALEPLTRLAKSKDI--RVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKIL 245 (550)
T ss_pred chhhhHhhcccchh--hHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHH
Confidence 56677776666664 888888888766533 4678899999999999999999999988763
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~ 144 (318)
+..++.|+.+.. +.++.++-.|..+|+.+. ....+|.+.+ ++.++.-..-.+.+.++.++.
T Consensus 246 aqaep~lv~~Lv~Lmd--~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~-Llqs~~~plilasVaCIrnis-- 320 (550)
T KOG4224|consen 246 AQAEPKLVPALVDLMD--DGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVE-LLQSPMGPLILASVACIRNIS-- 320 (550)
T ss_pred HhcccchHHHHHHHHh--CCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHH-HHhCcchhHHHHHHHHHhhcc--
Confidence 357889999998 888989888888888775 2457888999 557776666677777777665
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHH
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIID 213 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~ 213 (318)
+...+. ..+.+...+..|+.+|.-.+.+. .+..|+..|.++.. ..+++.+++
T Consensus 321 ---------------ihplNe-~lI~dagfl~pLVrlL~~~dnEe-iqchAvstLrnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 321 ---------------IHPLNE-VLIADAGFLRPLVRLLRAGDNEE-IQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred ---------------cccCcc-cceecccchhHHHHHHhcCCchh-hhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence 110110 11123456788999997655541 38888888887743 378899999
Q ss_pred HhCCCCHHHHHHHHHHHhccC----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--------------
Q 021051 214 SLGATSALLKHEVAYVLGQLQ----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-------------- 269 (318)
Q Consensus 214 ~l~d~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-------------- 269 (318)
++-|....++.+.-.++..+. +...+|.|+....+. +.+||-.|+.+|+++...
T Consensus 384 L~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~--s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P 461 (550)
T KOG4224|consen 384 LLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSE--SEEVRGNAAAALINLSSDVEHYARVIEAWDHP 461 (550)
T ss_pred HHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCcc--chhhcccHHHHHHhhhhhhHHHHHHHHHhcCc
Confidence 999988888876655555432 245678889888876 899999999999998732
Q ss_pred --hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 270 --QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 270 --~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.....|..++.+.+..++..+.|.+.++-..
T Consensus 462 ~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~ 494 (550)
T KOG4224|consen 462 VQGIQGRLARFLASHELTFRHIARWTIQQLLED 494 (550)
T ss_pred chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence 2456678888888888999999998877544
No 21
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.4e-10 Score=94.03 Aligned_cols=227 Identities=21% Similarity=0.215 Sum_probs=168.8
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccC----------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQ----------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------- 110 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------- 110 (318)
.+...|.++-+..+-.+|+.+..+|..+. ....+|.|+.+++ ..|+.+|..+..+++.++
T Consensus 167 GaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~--s~d~dvqyycttaisnIaVd~~~Rk~ 244 (550)
T KOG4224|consen 167 GALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLK--SGDLDVQYYCTTAISNIAVDRRARKI 244 (550)
T ss_pred cchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhc--cCChhHHHHHHHHhhhhhhhHHHHHH
Confidence 45666777667778888888888886654 3467999999999 899999999999999887
Q ss_pred ----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051 111 ----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE 186 (318)
Q Consensus 111 ----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 186 (318)
.|+.++.|.. +..++++.|+..|..+|+.+......- .+......+|.++++++++.
T Consensus 245 Laqaep~lv~~Lv~-Lmd~~s~kvkcqA~lALrnlasdt~Yq------------------~eiv~ag~lP~lv~Llqs~~ 305 (550)
T KOG4224|consen 245 LAQAEPKLVPALVD-LMDDGSDKVKCQAGLALRNLASDTEYQ------------------REIVEAGSLPLLVELLQSPM 305 (550)
T ss_pred HHhcccchHHHHHH-HHhCCChHHHHHHHHHHhhhcccchhh------------------hHHHhcCCchHHHHHHhCcc
Confidence 3568999999 778999999999999999887110000 00112347899999998887
Q ss_pred cChHHHHHHHHHHHhCC----------ChhHHHHHHHHhCCC-CHHHHHHHHHHHhccC-----------CcchHHHHHH
Q 021051 187 KGMYERYAALFALRNHG----------GDEAVSAIIDSLGAT-SALLKHEVAYVLGQLQ-----------NKAASAALSD 244 (318)
Q Consensus 187 ~~~~~r~~a~~~L~~~~----------~~~~~~~l~~~l~d~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~ 244 (318)
.+. -.+.+.++.++. +...+..|..+|.-. +.+++-.|+..|+.+. ...++|.+..
T Consensus 306 ~pl--ilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~e 383 (550)
T KOG4224|consen 306 GPL--ILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIE 383 (550)
T ss_pred hhH--HHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHH
Confidence 775 566677776663 235667788888644 4568888888888764 2568999999
Q ss_pred HHhccCCCHHHHH--HHHHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 245 VLRNVNEHPMVRH--EAAEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 245 ~l~~~~~~~~vr~--~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
++.|. ...+|. .++.+...+.+ .+.++.|+....+...+||--+..||.++...
T Consensus 384 L~lD~--pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~ 447 (550)
T KOG4224|consen 384 LLLDG--PVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSD 447 (550)
T ss_pred HHhcC--ChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhh
Confidence 99987 455554 44444444432 34688888888999999999999999887544
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.21 E-value=6.2e-10 Score=105.24 Aligned_cols=256 Identities=21% Similarity=0.240 Sum_probs=175.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChH----HHHHHhccCCCHHHHHHHHHHHhccCC------CC-cHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPR----DALIRATKDSSNLLAHEAAFALGQMQD------AE-AIPAL 85 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~----~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~-~~~~L 85 (318)
.+..+.+-|.++++ .+|..|+++++.+..++.. +.+.+.+.|+++.||..|+.++.++-. .. .++.+
T Consensus 80 ~~n~l~kdl~~~n~--~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l 157 (526)
T PF01602_consen 80 IINSLQKDLNSPNP--YIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDELIPKL 157 (526)
T ss_dssp HHHHHHHHHCSSSH--HHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHH
T ss_pred HHHHHHHhhcCCCH--HHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 55566777888876 8899999999888886544 445566688889999988888876531 12 47778
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhc-CCC----CcHHHHHhhhc---cCCCHHHHHHHHHHHHHHHhhhccCccccccccC
Q 021051 86 EAVLNDFSLHPIVRHEAAEALGAI-GLE----SNIPLLKNSLV---SDPAQEVRETCELALERIEKLKASGSDGSSMTER 157 (318)
Q Consensus 86 ~~~l~~~~~~~~vR~~a~~~L~~~-~~~----~~~~~L~~~l~---~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~ 157 (318)
..++. |+++.|+..|+.++..+ ..+ ..++.+...+. .+++|.++..++..+..+.. ....
T Consensus 158 ~~lL~--d~~~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~---~~~~------- 225 (526)
T PF01602_consen 158 KQLLS--DKDPSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAP---MEPE------- 225 (526)
T ss_dssp HHHTT--HSSHHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTS---SSHH-------
T ss_pred hhhcc--CCcchhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhccc---CChh-------
Confidence 88887 78888998898888887 332 23344333232 67888888888888876651 0000
Q ss_pred CCCcccCCCCCCCC--CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHH
Q 021051 158 SPFMSVDPAAPASS--CSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVL 230 (318)
Q Consensus 158 ~~~~~~~~~~~~~~--~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L 230 (318)
.. ...++.+...+.+.++. +...++.++..+... .+++.+..++.++++.+|..++..|
T Consensus 226 ------------~~~~~~~i~~l~~~l~s~~~~--V~~e~~~~i~~l~~~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L 291 (526)
T PF01602_consen 226 ------------DADKNRIIEPLLNLLQSSSPS--VVYEAIRLIIKLSPSPELLQKAINPLIKLLSSSDPNVRYIALDSL 291 (526)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHTSSSHHHHHHHHHHH
T ss_pred ------------hhhHHHHHHHHHHHhhccccH--HHHHHHHHHHHhhcchHHHHhhHHHHHHHhhcccchhehhHHHHH
Confidence 00 12466777777765555 488888888876543 3567788888888999999999998
Q ss_pred hccCCcc-----hHHHHHHHHh-ccCCCHHHHHHHHHHHhccCChh----hHHHHHHhhcC-CCHHHHHHHHHHHHhchh
Q 021051 231 GQLQNKA-----ASAALSDVLR-NVNEHPMVRHEAAEALGSIADDQ----SIGLLKEFAKD-PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 231 ~~~~~~~-----~~~~L~~~l~-~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~ 299 (318)
..+.... ........+. +. +..+|..+++.|..+.++. .++.|.+.+.+ .++.++..++.++..+..
T Consensus 292 ~~l~~~~~~~v~~~~~~~~~l~~~~--d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~ 369 (526)
T PF01602_consen 292 SQLAQSNPPAVFNQSLILFFLLYDD--DPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAE 369 (526)
T ss_dssp HHHCCHCHHHHGTHHHHHHHHHCSS--SHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhhhhhhhhhheecCCC--ChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence 8876533 2233444555 44 7899999999999998754 45556666643 477899999999888765
Q ss_pred hhc
Q 021051 300 EQL 302 (318)
Q Consensus 300 ~~~ 302 (318)
.-.
T Consensus 370 ~~~ 372 (526)
T PF01602_consen 370 KFP 372 (526)
T ss_dssp HHG
T ss_pred ccC
Confidence 544
No 23
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=99.14 E-value=6.4e-09 Score=98.35 Aligned_cols=253 Identities=21% Similarity=0.190 Sum_probs=183.2
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC--C----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP--G----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALE 86 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~--~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~ 86 (318)
....+++++.+++. ..|..+.-.+..+... + ++..+.+-+.++++.+|..|+++++.++.+.. .+.+.
T Consensus 43 ~~~~vi~l~~s~~~--~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~ 120 (526)
T PF01602_consen 43 LFMEVIKLISSKDL--ELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVI 120 (526)
T ss_dssp THHHHHCTCSSSSH--HHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHH
Confidence 45566777776664 7888777777776653 3 56667777789999999999999999997654 45567
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcC--CC----C-cHHHHHhhhccCCCHHHHHHHHHHHHHH-HhhhccCccccccccCC
Q 021051 87 AVLNDFSLHPIVRHEAAEALGAIG--LE----S-NIPLLKNSLVSDPAQEVRETCELALERI-EKLKASGSDGSSMTERS 158 (318)
Q Consensus 87 ~~l~~~~~~~~vR~~a~~~L~~~~--~~----~-~~~~L~~~l~~d~~~~vr~~a~~aL~~~-~~~~~~~~~~~~~l~~~ 158 (318)
+++. +++|.||+.|+.++.++- ++ . ..+.+.+ +..|+++.|+.+|..++..+ .. .+..
T Consensus 121 ~ll~--~~~~~VRk~A~~~l~~i~~~~p~~~~~~~~~~l~~-lL~d~~~~V~~~a~~~l~~i~~~-~~~~---------- 186 (526)
T PF01602_consen 121 KLLS--DPSPYVRKKAALALLKIYRKDPDLVEDELIPKLKQ-LLSDKDPSVVSAALSLLSEIKCN-DDSY---------- 186 (526)
T ss_dssp HHHH--SSSHHHHHHHHHHHHHHHHHCHCCHHGGHHHHHHH-HTTHSSHHHHHHHHHHHHHHHCT-HHHH----------
T ss_pred HHhc--CCchHHHHHHHHHHHHHhccCHHHHHHHHHHHHhh-hccCCcchhHHHHHHHHHHHccC-cchh----------
Confidence 7777 899999999999998763 22 2 4777888 56899999999999999877 20 0000
Q ss_pred CCcccCCCCCCCCCccHHHHHHH----HcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHHHHH
Q 021051 159 PFMSVDPAAPASSCSSVDMLREV----LLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~L~~~----l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a 226 (318)
...++.++.. +...++ +.+..++..+..+.. ...++.+...+.+.++.|..++
T Consensus 187 -------------~~~~~~~~~~L~~~l~~~~~--~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~ 251 (526)
T PF01602_consen 187 -------------KSLIPKLIRILCQLLSDPDP--WLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEA 251 (526)
T ss_dssp -------------TTHHHHHHHHHHHHHTCCSH--HHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------------hhhHHHHHHHhhhcccccch--HHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHH
Confidence 0134444444 334433 468899999998865 2356677777788899999999
Q ss_pred HHHHhccCCcc-----hHHHHHHHHhccCCCHHHHHHHHHHHhccCChh-----hHHHHHHhhc-CCCHHHHHHHHHHHH
Q 021051 227 AYVLGQLQNKA-----ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ-----SIGLLKEFAK-DPEPIVSQSCEVALS 295 (318)
Q Consensus 227 ~~~L~~~~~~~-----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~-----~~~~L~~~l~-~~~~~vr~~a~~aL~ 295 (318)
+.++..+.+.. +++.|..++.+. ++++|+.++..|..+.... ........+. +++..+|..+...|.
T Consensus 252 ~~~i~~l~~~~~~~~~~~~~L~~lL~s~--~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~~d~~Ir~~~l~lL~ 329 (526)
T PF01602_consen 252 IRLIIKLSPSPELLQKAINPLIKLLSSS--DPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYDDDPSIRKKALDLLY 329 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCSSSHHHHHHHHHHHH
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHhhcc--cchhehhHHHHHHHhhcccchhhhhhhhhhheecCCCChhHHHHHHHHHh
Confidence 99999877643 578899999876 8999999999999986433 2222333444 889999999999998
Q ss_pred hchhhhc
Q 021051 296 MLEYEQL 302 (318)
Q Consensus 296 ~l~~~~~ 302 (318)
.+...+.
T Consensus 330 ~l~~~~n 336 (526)
T PF01602_consen 330 KLANESN 336 (526)
T ss_dssp HH--HHH
T ss_pred hcccccc
Confidence 8876554
No 24
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.08 E-value=1.6e-09 Score=98.95 Aligned_cols=288 Identities=18% Similarity=0.133 Sum_probs=166.6
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ 77 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 77 (318)
.=++.++.|.++|.+++- ....-|..+|.++.. .-.++.+.+++++++|.+|..|+.++.++-
T Consensus 125 ~wpelLp~L~~~L~s~d~--n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i 202 (885)
T KOG2023|consen 125 HWPELLPQLCELLDSPDY--NTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFI 202 (885)
T ss_pred cchhHHHHHHHHhcCCcc--cccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhee
Confidence 346777888888887764 344445555555433 124566666667888888888877776543
Q ss_pred C----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHH
Q 021051 78 D----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELA 137 (318)
Q Consensus 78 ~----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~a 137 (318)
- +..+..+..+.. |+++.||...++++..+-+ ...++.+.. ..+|.|..|-..|.+-
T Consensus 203 ~~~~qal~~~iD~Fle~lFalan--D~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~-~tqd~dE~VALEACEF 279 (885)
T KOG2023|consen 203 IIQTQALYVHIDKFLEILFALAN--DEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQ-RTQDVDENVALEACEF 279 (885)
T ss_pred ecCcHHHHHHHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHH-HccCcchhHHHHHHHH
Confidence 1 123334444443 7788888887777765421 123444444 4567777777766666
Q ss_pred HHHHHhhhccCcc--------ccccccCC-CCcccCC----------CCCCCCCccHHHHHHHH---------c---C--
Q 021051 138 LERIEKLKASGSD--------GSSMTERS-PFMSVDP----------AAPASSCSSVDMLREVL---------L---G-- 184 (318)
Q Consensus 138 L~~~~~~~~~~~~--------~~~~l~~~-~~~~~~~----------~~~~~~~~~~~~L~~~l---------~---~-- 184 (318)
.-.+++ .+-.+. +...+-.. .|...+. ..+..++..-|...+.- . +
T Consensus 280 wla~ae-qpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddD 358 (885)
T KOG2023|consen 280 WLALAE-QPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDD 358 (885)
T ss_pred HHHHhc-CcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccc
Confidence 555541 000000 00000000 0000000 00000000001000000 0 0
Q ss_pred --------CCcChHHHHH---HHHHHHhCCChhH----HHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchH
Q 021051 185 --------EEKGMYERYA---ALFALRNHGGDEA----VSAIIDSLGATSALLKHEVAYVLGQLQN----------KAAS 239 (318)
Q Consensus 185 --------~~~~~~~r~~---a~~~L~~~~~~~~----~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~ 239 (318)
.++.. |.. ++..|.++=.++. +|.|.+.|.+..|.+|..++-+||.+.. ++.+
T Consensus 359 e~DDdD~~~dWNL--RkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLi 436 (885)
T KOG2023|consen 359 EDDDDDAFSDWNL--RKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELI 436 (885)
T ss_pred ccccccccccccH--hhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHH
Confidence 01233 554 3455555544444 4555666778899999999999998753 5788
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCC--------h---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhc
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIAD--------D---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~ 308 (318)
|.|+..+.|. .|.||.-.++.|++++. . ..+..|.+.+-|.+..|..+|+.|+..+......+...|
T Consensus 437 p~l~~~L~DK--kplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~ 514 (885)
T KOG2023|consen 437 PFLLSLLDDK--KPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPY 514 (885)
T ss_pred HHHHHHhccC--ccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHH
Confidence 9999999988 89999999999999973 1 123334444557899999999999999988877665555
Q ss_pred cc
Q 021051 309 LF 310 (318)
Q Consensus 309 ~~ 310 (318)
..
T Consensus 515 l~ 516 (885)
T KOG2023|consen 515 LE 516 (885)
T ss_pred HH
Confidence 43
No 25
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=5.2e-08 Score=94.48 Aligned_cols=284 Identities=19% Similarity=0.174 Sum_probs=165.8
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----C-
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----A- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~- 79 (318)
+.++.|....+++++ ..|..|+..|..+.. .+....+.+.+.|++..||..|+++++.+.. +
T Consensus 118 ell~~L~q~~~S~~~--~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~ 195 (1075)
T KOG2171|consen 118 ELLQFLFQSTKSPNP--SLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS 195 (1075)
T ss_pred HHHHHHHHHhcCCCc--chhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence 456667777777877 778888888766532 1334444455567665588888888775431 0
Q ss_pred ------CcHHHHHHhhhc--CCCCHHHHHHHHHHHHhcCC--CC--------cHHHHHhhh-ccCCCHHHHHHHHHHHHH
Q 021051 80 ------EAIPALEAVLND--FSLHPIVRHEAAEALGAIGL--ES--------NIPLLKNSL-VSDPAQEVRETCELALER 140 (318)
Q Consensus 80 ------~~~~~L~~~l~~--~~~~~~vR~~a~~~L~~~~~--~~--------~~~~L~~~l-~~d~~~~vr~~a~~aL~~ 140 (318)
..+|.++..+.. ++.|...-..++.+|..+-. +. .+..-.+.. .++-++.+|..|+..+.-
T Consensus 196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs 275 (1075)
T KOG2171|consen 196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVS 275 (1075)
T ss_pred HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 123333333331 13333333444554444321 11 222222211 134477888888777765
Q ss_pred HHhhhcc------C--cccc--------ccccC-----------CCCccc---------CCCCCCCCCccH----HHHHH
Q 021051 141 IEKLKAS------G--SDGS--------SMTER-----------SPFMSV---------DPAAPASSCSSV----DMLRE 180 (318)
Q Consensus 141 ~~~~~~~------~--~~~~--------~~l~~-----------~~~~~~---------~~~~~~~~~~~~----~~L~~ 180 (318)
+.+.... . ..+. +...+ ....+. ..+..++++..+ +.+-.
T Consensus 276 ~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~ 355 (1075)
T KOG2171|consen 276 LSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEA 355 (1075)
T ss_pred HHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHH
Confidence 5421000 0 0000 00000 000000 001112334444 45566
Q ss_pred HHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchH
Q 021051 181 VLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAAS 239 (318)
Q Consensus 181 ~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~ 239 (318)
++.+.++.. |.+++.+++.++. +..++.+++.++|++|.||.+|+.++|++.. ....
T Consensus 356 ~l~S~~w~~--R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~ 433 (1075)
T KOG2171|consen 356 MLQSTEWKE--RHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLP 433 (1075)
T ss_pred HhcCCCHHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhcc
Confidence 677888876 9999999998854 3677788889999999999999999999874 2344
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCC---h-h---hHHHHH-----HhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIAD---D-Q---SIGLLK-----EFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~-~---~~~~L~-----~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+.|+..+.+. +++.|...|+-++-++.. . . .++.|. -+.+++.+.|+..+..||+.+..-.-.+
T Consensus 434 ~aL~~~ld~~-~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 434 PALIALLDST-QNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HHHHHHhccc-CchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 5677777664 588999999999987642 1 1 122222 2455688999999999999987664444
No 26
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=5.4e-09 Score=95.59 Aligned_cols=258 Identities=17% Similarity=0.123 Sum_probs=166.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-------------
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------------- 79 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------------- 79 (318)
..+..|.+.++ -+|...=..+.++.+ |+..+.|...|.+++......|+.+|.++..+
T Consensus 94 ~~l~~lgd~~~--lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rp 171 (885)
T KOG2023|consen 94 ECLHGLGDASP--LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRP 171 (885)
T ss_pred HHHhhccCchH--HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCc
Confidence 45566777776 677765555554433 78999999999999988999999999887632
Q ss_pred --CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--C--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051 80 --EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--L--------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 80 --~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~ 147 (318)
-.+|.++++.+ +++|.+|..|+..+..+= . ...++.+.. +.+|++|.||+....++..+-+ .+.
T Consensus 172 l~~mipkfl~f~~--h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC~alv~Lle-vr~ 247 (885)
T KOG2023|consen 172 LNIMIPKFLQFFK--HPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVCRALVFLLE-VRP 247 (885)
T ss_pred hHHhHHHHHHHHh--CCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHH-hcH
Confidence 24788999999 999999999999888653 1 124566666 6799999999999999987651 000
Q ss_pred CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC------------hhHHHHHHHHh
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG------------DEAVSAIIDSL 215 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------------~~~~~~l~~~l 215 (318)
+.+..-+ ...+..++..-++.+..+ ...|.+-...+.. ++.+|.|.+.+
T Consensus 248 -dkl~phl----------------~~IveyML~~tqd~dE~V--ALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 248 -DKLVPHL----------------DNIVEYMLQRTQDVDENV--ALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred -Hhcccch----------------HHHHHHHHHHccCcchhH--HHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 0000000 112222222223333332 2222222111111 01111111100
Q ss_pred ----------C------------------------------------C----------CCHHHHHHHHHHHh---ccCCc
Q 021051 216 ----------G------------------------------------A----------TSALLKHEVAYVLG---QLQNK 236 (318)
Q Consensus 216 ----------~------------------------------------d----------~~~~vr~~a~~~L~---~~~~~ 236 (318)
+ + .+|.+|...+.+|+ .+-..
T Consensus 309 ~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~ 388 (885)
T KOG2023|consen 309 VYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGD 388 (885)
T ss_pred ccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHH
Confidence 0 0 13788865555554 44445
Q ss_pred chHHHHHHH----HhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 237 AASAALSDV----LRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 237 ~~~~~L~~~----l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.++.+..+ +.+. .|.+|-+++.+||.|.. ++.+|+|..++.|.-+-||...+|.|+++..+-.
T Consensus 389 elL~~l~PlLk~~L~~~--~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~ 466 (885)
T KOG2023|consen 389 ELLPILLPLLKEHLSSE--EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVV 466 (885)
T ss_pred HHHHHHHHHHHHHcCcc--hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHh
Confidence 555555544 4444 89999999999999962 5689999999999999999999999999988766
Q ss_pred ch
Q 021051 303 EK 304 (318)
Q Consensus 303 ~~ 304 (318)
.+
T Consensus 467 ~~ 468 (885)
T KOG2023|consen 467 QD 468 (885)
T ss_pred cC
Confidence 55
No 27
>PTZ00429 beta-adaptin; Provisional
Probab=98.96 E-value=1.3e-07 Score=91.26 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=58.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHH----HHh
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKG--PG----PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPAL----EAV 88 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L----~~~ 88 (318)
..+++.+.+++. ..|......+..++. ++ ++..+.+-++|++|.+|..|+++++.++.+..++.+ .+.
T Consensus 71 ~dVvk~~~S~d~--elKKLvYLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk~ 148 (746)
T PTZ00429 71 VDVVKLAPSTDL--ELKKLVYLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRRA 148 (746)
T ss_pred HHHHHHhCCCCH--HHHHHHHHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 334444444443 555555555444433 22 244444444555566666666666655554433333 333
Q ss_pred hhcCCCCHHHHHHHHHHHHhcC--C------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 89 LNDFSLHPIVRHEAAEALGAIG--L------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 89 l~~~~~~~~vR~~a~~~L~~~~--~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+. |++|.||+.|+.++.++- + .+.++.|.+ ++.|+++.|..+|+.+|..+.
T Consensus 149 L~--D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~ 207 (746)
T PTZ00429 149 VA--DPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE-LLNDNNPVVASNAAAIVCEVN 207 (746)
T ss_pred hc--CCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH-HhcCCCccHHHHHHHHHHHHH
Confidence 33 555666665555555532 1 123455555 445556666555555555543
No 28
>PTZ00429 beta-adaptin; Provisional
Probab=98.96 E-value=4.6e-07 Score=87.45 Aligned_cols=255 Identities=14% Similarity=0.069 Sum_probs=177.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHH-hcc--CC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------CcHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSL-RNL--KG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------EAIPAL 85 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l-~~~--~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~~L 85 (318)
-..+|.+.|.+.+. ..|..+++-+ ..+ |. ......+++.+.+.+..+|...-..+..++.. .++..|
T Consensus 33 e~~ELr~~L~s~~~--~~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelalLaINtl 110 (746)
T PTZ00429 33 EGAELQNDLNGTDS--YRKKAAVKRIIANMTMGRDVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKALLAVNTF 110 (746)
T ss_pred hHHHHHHHHHCCCH--HHHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHHHHHHHH
Confidence 45778888888775 6777777644 222 32 34566677788888988888877666655532 235666
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051 86 EAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161 (318)
Q Consensus 86 ~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~ 161 (318)
.+-+. +++|.+|..|++.|+.+..+..++. +.+ ...|++|.||+.|+.++.++- ......
T Consensus 111 ~KDl~--d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk-~L~D~~pYVRKtAalai~Kly--~~~pel----------- 174 (746)
T PTZ00429 111 LQDTT--NSSPVVRALAVRTMMCIRVSSVLEYTLEPLRR-AVADPDPYVRKTAAMGLGKLF--HDDMQL----------- 174 (746)
T ss_pred HHHcC--CCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHH--hhCccc-----------
Confidence 66666 8999999999999999998876554 456 458999999999999999875 111000
Q ss_pred ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------hhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------DEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
.......+.|.+++.|.++.+ ...|+.+|..+.. ...+..+.+.+.+-+++.+...+..|..
T Consensus 175 -------v~~~~~~~~L~~LL~D~dp~V--v~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~ 245 (746)
T PTZ00429 175 -------FYQQDFKKDLVELLNDNNPVV--ASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA 245 (746)
T ss_pred -------ccccchHHHHHHHhcCCCccH--HHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Confidence 001235788999898888875 8888888877742 2334445566667788889999999987
Q ss_pred cCCc------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC---hhhHH--------HHHHhhcCCCHHHHHHHHHHHH
Q 021051 233 LQNK------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD---DQSIG--------LLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 233 ~~~~------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~~~~~--------~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
..+. ..+..+...+++. ++.|..+|++.+..+.. +..++ .|+.+ .+.++.++..+...+.
T Consensus 246 y~P~~~~e~~~il~~l~~~Lq~~--N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~ 322 (746)
T PTZ00429 246 QRPSDKESAETLLTRVLPRMSHQ--NPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIH 322 (746)
T ss_pred cCCCCcHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHH
Confidence 6542 2455566666676 89999999999888763 33222 23333 4566788888888887
Q ss_pred hchhhh
Q 021051 296 MLEYEQ 301 (318)
Q Consensus 296 ~l~~~~ 301 (318)
.+....
T Consensus 323 ~i~~~~ 328 (746)
T PTZ00429 323 ALLVIF 328 (746)
T ss_pred HHHHHC
Confidence 665543
No 29
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.94 E-value=1.2e-07 Score=91.97 Aligned_cols=123 Identities=21% Similarity=0.243 Sum_probs=94.4
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CCCChHHHHHHhcc-CCCHHHHHHHHHHHhccCCC-----------CcH
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNL-KGPGPRDALIRATK-DSSNLLAHEAAFALGQMQDA-----------EAI 82 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~-----------~~~ 82 (318)
.....|+..|-+++. .+|..|-+++.+. +.+...+.|...+. ..++.+|..|+-.+.++-.. ..-
T Consensus 4 ~~l~qLl~~l~spDn--~vr~~Ae~~l~~~~~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~sik 81 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDN--EVRRQAEEALETLAKTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIK 81 (1075)
T ss_pred hHHHHHHHHhcCCCc--hHHHHHHHHHHHhhcccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 346678888888987 8999999999854 55678888998884 67899999888776553311 223
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAIG-------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..|+..+. .++.+.||+.....++.+. .|+.++.|.+ ..+++++..|..+...|..+.
T Consensus 82 s~lL~~~~-~E~~~~vr~k~~dviAeia~~~l~e~WPell~~L~q-~~~S~~~~~rE~al~il~s~~ 146 (1075)
T KOG2171|consen 82 SSLLEIIQ-SETEPSVRHKLADVIAEIARNDLPEKWPELLQFLFQ-STKSPNPSLRESALLILSSLP 146 (1075)
T ss_pred HHHHHHHH-hccchHHHHHHHHHHHHHHHhccccchHHHHHHHHH-HhcCCCcchhHHHHHHHHhhh
Confidence 44555555 3788999999999888764 3567788888 568999999999999998876
No 30
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.88 E-value=4.8e-07 Score=84.64 Aligned_cols=261 Identities=19% Similarity=0.207 Sum_probs=174.2
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC-----------CCChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLK-----------GPGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
.+...+.|...|.++++ .+|..+++.++... +.+..+.++..+.+++..|...|+.+|..+...
T Consensus 75 ~~~~~~~L~~gL~h~~~--~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~ 152 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSP--KVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEG 152 (503)
T ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchh
Confidence 45677788999999998 99999999887752 256788888999999999999999999887532
Q ss_pred -------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 80 -------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 80 -------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
.....|..++. .++..+|..+...+..+. +.+.++.+...+ +++|.-|+.+++..+..+
T Consensus 153 ~~~l~~~~~~~~L~~l~~--~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL-~~dDiLvqlnalell~~L 229 (503)
T PF10508_consen 153 LEQLFDSNLLSKLKSLMS--QSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKEL-DSDDILVQLNALELLSEL 229 (503)
T ss_pred HHHHhCcchHHHHHHHHh--ccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHh-cCccHHHHHHHHHHHHHH
Confidence 22566677777 567888888888887764 245677888844 668999999999999998
Q ss_pred HhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHH------HHHHhCCC----------h
Q 021051 142 EKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAAL------FALRNHGG----------D 205 (318)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~------~~L~~~~~----------~ 205 (318)
+...++. ..+ .....++.|...+.+...+. |..++ ...+++.. +
T Consensus 230 a~~~~g~----~yL--------------~~~gi~~~L~~~l~~~~~dp--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p 289 (503)
T PF10508_consen 230 AETPHGL----QYL--------------EQQGIFDKLSNLLQDSEEDP--RLSSLLLPGRMKFFGNLARVSPQEVLELYP 289 (503)
T ss_pred HcChhHH----HHH--------------HhCCHHHHHHHHHhccccCC--cccchhhhhHHHHHHHHHhcChHHHHHHHH
Confidence 8111110 011 12346777777776543332 22222 22232222 2
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc-hH-----------HHHHHHHhc--cCCCHHHHHHHHHHHhcc--CCh
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQNKA-AS-----------AALSDVLRN--VNEHPMVRHEAAEALGSI--ADD 269 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~~-----------~~L~~~l~~--~~~~~~vr~~a~~aL~~~--~~~ 269 (318)
..+..+.+.+.+.|+..+..|+.++|.++... .. ...+..+.+ .+...++|..++.+++.+ ...
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 33344555567888989999999999887521 11 111222211 112567899999999887 211
Q ss_pred --------------------hhHH-HHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 270 --------------------QSIG-LLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 270 --------------------~~~~-~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
.... .+..+++.|.+++|.++...|..+-.
T Consensus 370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~ 420 (503)
T PF10508_consen 370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA 420 (503)
T ss_pred CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 1122 67788899999999998887776533
No 31
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=4.5e-07 Score=84.77 Aligned_cols=139 Identities=17% Similarity=0.181 Sum_probs=92.1
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHHHHHHHHh-CCCC-HHHHHHHHHHHhccCCcc----hHHHH
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAVSAIIDSL-GATS-ALLKHEVAYVLGQLQNKA----ASAAL 242 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~~~l~~~l-~d~~-~~vr~~a~~~L~~~~~~~----~~~~L 242 (318)
...+..|+.+|++.... ++..+..+..+ ...-..|.+..++ ...| ..++.-=+..|..+.++. .+..+
T Consensus 321 ~~i~kaLvrLLrs~~~v---qyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~ 397 (968)
T KOG1060|consen 321 TKIAKALVRLLRSNREV---QYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILREL 397 (968)
T ss_pred HHHHHHHHHHHhcCCcc---hhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHH
Confidence 34567788888766554 55555555444 2233445555544 2333 345555566666666554 44445
Q ss_pred HHHHhccCCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcccccCCC
Q 021051 243 SDVLRNVNEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQAPL 315 (318)
Q Consensus 243 ~~~l~~~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~~~~~ 315 (318)
...+++. +..+-.++++++|+-+ .+.++..|+.++.+.+..|-.++...+.++-+....+-++++++-+-+
T Consensus 398 q~YI~s~--d~~faa~aV~AiGrCA~~~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~l 474 (968)
T KOG1060|consen 398 QTYIKSS--DRSFAAAAVKAIGRCASRIGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARL 474 (968)
T ss_pred HHHHhcC--chhHHHHHHHHHHHHHHhhCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence 5555665 5578889999999875 356899999999998999999999999988776665558888775543
No 32
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.75 E-value=4.9e-07 Score=84.53 Aligned_cols=249 Identities=20% Similarity=0.199 Sum_probs=164.1
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC-----------CCCc
Q 021051 21 LCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ-----------DAEA 81 (318)
Q Consensus 21 L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~ 81 (318)
+...|.+.+. +.-..++..|..+.. +...+.|...|.++++.||..+++.++++. ....
T Consensus 43 lf~~L~~~~~--e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l 120 (503)
T PF10508_consen 43 LFDCLNTSNR--EQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNEL 120 (503)
T ss_pred HHHHHhhcCh--HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccH
Confidence 6667777765 555667767766543 456777778889999999999999998753 3467
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG 151 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 151 (318)
++.+..++. +++..|...|+.+|..+... .....|.. +...+++.+|..+...+..+. ..+...
T Consensus 121 ~~~i~~~L~--~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~--~~S~~~- 194 (503)
T PF10508_consen 121 LPLIIQCLR--DPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIA--SHSPEA- 194 (503)
T ss_pred HHHHHHHHc--CCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHH--hcCHHH-
Confidence 888899999 99999999999999988632 22555666 545568888988888888776 111100
Q ss_pred cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCC--C
Q 021051 152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGAT--S 219 (318)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~--~ 219 (318)
.+. ......++.++..+.++|. .++.+++..+..+.. ...++.|.+.+.+. +
T Consensus 195 ~~~--------------~~~sgll~~ll~eL~~dDi--Lvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~d 258 (503)
T PF10508_consen 195 AEA--------------VVNSGLLDLLLKELDSDDI--LVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEED 258 (503)
T ss_pred HHH--------------HHhccHHHHHHHHhcCccH--HHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccC
Confidence 000 0123468888888877444 469999999988743 24556666666432 3
Q ss_pred HHHHHHHH------HHHhccC---C-------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hh-----------
Q 021051 220 ALLKHEVA------YVLGQLQ---N-------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QS----------- 271 (318)
Q Consensus 220 ~~vr~~a~------~~L~~~~---~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~----------- 271 (318)
| +...+ ...|.+. + +..+..|...+.+. |+..+..|+.++|.+|.. +.
T Consensus 259 p--~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~--d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~ 334 (503)
T PF10508_consen 259 P--RLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQ--DPTIREVAFDTLGQIGSTVEGKQLLLQKQGPA 334 (503)
T ss_pred C--cccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHhCCHHHHHHHHhhcchH
Confidence 3 21122 2223222 1 22333444444444 899999999999999842 11
Q ss_pred ----HHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 272 ----IGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 272 ----~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
+..+.........++|..+..+|..+
T Consensus 335 ~~~~l~~~~~~~~~~~~~lk~r~l~al~~i 364 (503)
T PF10508_consen 335 MKHVLKAIGDAIKSGSTELKLRALHALASI 364 (503)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence 12222234456678999999999988
No 33
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=98.68 E-value=6.1e-06 Score=78.93 Aligned_cols=239 Identities=18% Similarity=0.170 Sum_probs=162.8
Q ss_pred HHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCc
Q 021051 38 ALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLESN 114 (318)
Q Consensus 38 A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~ 114 (318)
.++.|+.+.. +.+..+.+-+.......|.....+|...|...++..+.+.+.+..-.+......+..+... .++..
T Consensus 316 lv~~lR~~~~-e~l~~l~~~~~~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~~~ 394 (574)
T smart00638 316 LVRLLRTLSE-EQLEQLWRQLYEKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTEEI 394 (574)
T ss_pred HHHHHHhCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCHHH
Confidence 4444444444 4444454444332278899999999999999999999999995333333444444444332 45667
Q ss_pred HHHHHhhhccC----CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CC
Q 021051 115 IPLLKNSLVSD----PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EE 186 (318)
Q Consensus 115 ~~~L~~~l~~d----~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~ 186 (318)
+..+.. +.++ +.+.++..+..+++.+.. ..... ..-. + ...-.+.++.+...+.+ .+
T Consensus 395 l~~l~~-l~~~~~~~~~~~l~~sa~l~~~~lv~-~~c~~--------~~~~---~--~~~~~~~~~~l~~~l~~~~~~~~ 459 (574)
T smart00638 395 LKALFE-LAESPEVQKQPYLRESALLAYGSLVR-RYCVN--------TPSC---P--DFVLEELLKYLHELLQQAVSKGD 459 (574)
T ss_pred HHHHHH-HhcCccccccHHHHHHHHHHHHHHHH-HHhcC--------CCCC---C--hhhHHHHHHHHHHHHHHHHhcCC
Confidence 777777 4443 367899999999987761 10000 0000 0 00002345555555432 23
Q ss_pred cChHHHHHHHHHHHhCCChhHHHHHHHHhC-C--CCHHHHHHHHHHHhcc---CCcchHHHHHHHHhccCCCHHHHHHHH
Q 021051 187 KGMYERYAALFALRNHGGDEAVSAIIDSLG-A--TSALLKHEVAYVLGQL---QNKAASAALSDVLRNVNEHPMVRHEAA 260 (318)
Q Consensus 187 ~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~-d--~~~~vr~~a~~~L~~~---~~~~~~~~L~~~l~~~~~~~~vr~~a~ 260 (318)
.. .+..++++||++|.+..++.+...+. + .+..+|..|+.+|.++ .+..+.+.|+..+.+..+++++|.+|+
T Consensus 460 ~~--~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~ 537 (574)
T smart00638 460 EE--EIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAV 537 (574)
T ss_pred ch--heeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHH
Confidence 32 47889999999999999999988775 3 3678999999999976 456788999999998888999999999
Q ss_pred HHHhcc-CChhhHHHHHHhhc-CCCHHHHHHHHHHH
Q 021051 261 EALGSI-ADDQSIGLLKEFAK-DPEPIVSQSCEVAL 294 (318)
Q Consensus 261 ~aL~~~-~~~~~~~~L~~~l~-~~~~~vr~~a~~aL 294 (318)
..|... .+...+..+...+. +++.+|+......|
T Consensus 538 ~~lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 538 LVLMETKPSVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHhcCCCHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 999998 56667788887654 67888887766554
No 34
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=7.6e-07 Score=80.64 Aligned_cols=275 Identities=18% Similarity=0.165 Sum_probs=182.1
Q ss_pred hhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhccC---CCHHHHHHHHHHHhccC---CCCcHHHHHHhhh-cCC
Q 021051 24 RLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATKD---SSNLLAHEAAFALGQMQ---DAEAIPALEAVLN-DFS 93 (318)
Q Consensus 24 ~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d---~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l~-~~~ 93 (318)
.|...+. |.++.|...||-+.. .+..+.|..+|.+ .+....-.|+++||-+. .....+.|.+.+. +.|
T Consensus 344 wlgka~n--WaKFtatAslGvIH~gn~n~~~~il~pYLP~e~ass~~~eGGalyalGLI~Agfgr~~TeYL~e~~~~teD 421 (926)
T COG5116 344 WLGKASN--WAKFTATASLGVIHLGNSNPGYEILKPYLPSEVASSRQKEGGALYALGLIKAGFGREDTEYLLEYFLDTED 421 (926)
T ss_pred hhhhcch--HhhhhhhhhceeEeeccCCchhHhhhccCCcccchhhhccCceeeeehhhccCcCcccHHHHHHHhCcccc
Confidence 4444443 799999999988743 4567788888832 35566777888887653 4467788886655 222
Q ss_pred CC-HHHHHHHHHHHHhcC----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccC---CCCcccC-
Q 021051 94 LH-PIVRHEAAEALGAIG----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTER---SPFMSVD- 164 (318)
Q Consensus 94 ~~-~~vR~~a~~~L~~~~----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~---~~~~~~~- 164 (318)
++ +.+..+++-.+|-++ +......|.+.+ .......-.++..+++.++--..+...+.+++.. .......
T Consensus 422 e~~~~l~yG~~LGiGL~~MgSan~eiye~lKe~l-~nD~a~~geAa~~gMGl~mLgt~s~eai~dm~tya~ETqhe~i~R 500 (926)
T COG5116 422 ELTPELAYGVCLGIGLINMGSANREIYEKLKELL-KNDRALLGEAAVYGMGLLMLGTWSVEAIEDMRTYAGETQHERIKR 500 (926)
T ss_pred cccHHHHHHHHhhhcchhcccccHHHHHHHHHHH-hcchhhhhhhhhhccceeeecCCCHHHHHHHHHHhcchhhhhHHh
Confidence 22 577788887777543 345678888844 4445566677777777655100011111112110 0000000
Q ss_pred ------CCCCCCCCccH-HHHHHHHcCCCcChHHHHHHHHHHHh----CCChhHHHHHHHH-hCCCCHHHHHHHHHHHhc
Q 021051 165 ------PAAPASSCSSV-DMLREVLLGEEKGMYERYAALFALRN----HGGDEAVSAIIDS-LGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 165 ------~~~~~~~~~~~-~~L~~~l~~~~~~~~~r~~a~~~L~~----~~~~~~~~~l~~~-l~d~~~~vr~~a~~~L~~ 232 (318)
.....+.++.. ..+.+++.+.+.-. |+..+.+++. .++...+..+.+. .+|.+..||++|+.+||.
T Consensus 501 glgig~aLi~ygrqe~add~I~ell~d~ds~l--Ry~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGf 578 (926)
T COG5116 501 GLGIGFALILYGRQEMADDYINELLYDKDSIL--RYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGF 578 (926)
T ss_pred hhhhhhhHhhhhhHHHHHHHHHHHhcCchHHh--hhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheee
Confidence 00111223333 34555565655544 8877766653 2455677777774 689999999999999998
Q ss_pred c--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhcc----CChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 233 L--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSI----ADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 233 ~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+ ++...++..++++.+. -++.||...+-+||-. |+..+++.|..+..|++..||+.|+.|++.|..+...+
T Consensus 579 vc~~D~~~lv~tvelLs~s-hN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~ 655 (926)
T COG5116 579 VCCDDRDLLVGTVELLSES-HNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCNPE 655 (926)
T ss_pred eEecCcchhhHHHHHhhhc-cchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcc
Confidence 6 5778899999999764 3899999998888765 57789999999999999999999999999998887655
No 35
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=2.8e-06 Score=77.94 Aligned_cols=255 Identities=20% Similarity=0.163 Sum_probs=167.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHH-------HHHhccCCCChH---HHHHHhccCCCHHHHHHHHHHHhcc-------CC
Q 021051 16 EMEKFLCDRLVDPTQPISERFRAL-------FSLRNLKGPGPR---DALIRATKDSSNLLAHEAAFALGQM-------QD 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~-------~~l~~~~~~~~~---~~L~~~l~d~~~~vr~~a~~aL~~~-------~~ 78 (318)
..+..|.+...|.+. ...|..+. ..||....|-.+ +.+...+.|..+.||.+|..+...+ +.
T Consensus 174 ~~l~~l~~ai~dk~~-~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV 252 (569)
T KOG1242|consen 174 GFLDNLSKAIIDKKS-ALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAV 252 (569)
T ss_pred hHHHHHHHHhcccch-hhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchh
Confidence 356667788888875 33443222 223433444444 4444455788999999888776443 23
Q ss_pred CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 79 AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 79 ~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
+..++.++.-+. +..|....++++.++.+.+ ++.+|.+.+ .+.|..+.||.++..++.+++.
T Consensus 253 K~llpsll~~l~--~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse-vl~DT~~evr~a~~~~l~~~~s----- 324 (569)
T KOG1242|consen 253 KLLLPSLLGSLL--EAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE-VLWDTKPEVRKAGIETLLKFGS----- 324 (569)
T ss_pred hHhhhhhHHHHH--HHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH-HHccCCHHHHHHHHHHHHHHHH-----
Confidence 445666666666 4589999999999997763 567888999 5689999999999999999982
Q ss_pred ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----Ch----hHHHHHHHHhCCCC
Q 021051 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----GD----EAVSAIIDSLGATS 219 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----~~----~~~~~l~~~l~d~~ 219 (318)
...+.++ ...+|.|++.+.++... -..++..|+... +. -.+|.|...+.+.+
T Consensus 325 -----vidN~dI-----------~~~ip~Lld~l~dp~~~---~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRs 385 (569)
T KOG1242|consen 325 -----VIDNPDI-----------QKIIPTLLDALADPSCY---TPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERS 385 (569)
T ss_pred -----hhccHHH-----------HHHHHHHHHHhcCcccc---hHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhcc
Confidence 1111111 12578899999888754 345667776543 12 23456666777788
Q ss_pred HHHHHHHHHHHhccC----C--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-------ChhhHHHHHHhhc
Q 021051 220 ALLKHEVAYVLGQLQ----N--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-------DDQSIGLLKEFAK 280 (318)
Q Consensus 220 ~~vr~~a~~~L~~~~----~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~ 280 (318)
...++.++...+.|. + ++.+|.|...+.++ .|++|.-+.++|+.+- -+..++.+.+...
T Consensus 386 t~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~--~PEvR~vaarAL~~l~e~~g~~~f~d~~p~l~e~~~ 463 (569)
T KOG1242|consen 386 TSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDA--VPEVRAVAARALGALLERLGEVSFDDLIPELSETLT 463 (569)
T ss_pred chhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhhcccccccHHHHhhc
Confidence 888898999998875 2 23455555566665 8999999999996652 2445667776654
Q ss_pred C-CCHHHHHHHHHHHHhchhh
Q 021051 281 D-PEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 281 ~-~~~~vr~~a~~aL~~l~~~ 300 (318)
+ ....-|..+...|.....+
T Consensus 464 ~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 464 SEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred cchhhhhhHHHhhhHHHHHhc
Confidence 4 2333455555555554433
No 36
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=98.58 E-value=8.4e-06 Score=78.77 Aligned_cols=244 Identities=19% Similarity=0.141 Sum_probs=152.3
Q ss_pred HHHHhccCCCChHHHHHHhccCC--CHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---CCC
Q 021051 39 LFSLRNLKGPGPRDALIRATKDS--SNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG---LES 113 (318)
Q Consensus 39 ~~~l~~~~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~---~~~ 113 (318)
++.++.+.. +.+..+.+-+... ....|...+.+|...|...++..+.+++.+..-........+..|.... +.+
T Consensus 353 v~~lr~l~~-~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~~ea~~~l~~l~~~~~~Pt~e 431 (618)
T PF01347_consen 353 VRLLRTLSY-EDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTDDEAAQLLASLPFHVRRPTEE 431 (618)
T ss_dssp HHHHTTS-H-HHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-HHHHHHHHHHHHHT-----HH
T ss_pred HHHHhcCCH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhhcCCCCHH
Confidence 333344333 4455555555444 6789999999999999999999999999943233333344444444333 344
Q ss_pred cHHHHHhhhcc----CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc----CC
Q 021051 114 NIPLLKNSLVS----DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL----GE 185 (318)
Q Consensus 114 ~~~~L~~~l~~----d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~----~~ 185 (318)
.+..+.. +.+ ..++.++..++.+++.+.......... .....+......++.++.+...+. ..
T Consensus 432 ~l~~l~~-L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~--------~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 502 (618)
T PF01347_consen 432 LLKELFE-LAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDS--------AEFCDPCSRCIIEKYVPYLEQELKEAVSRG 502 (618)
T ss_dssp HHHHHHH-HHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-------------------SS--GGGTHHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHhCccccCChhHHHHHHHHHHHHhCceeecccc--------cccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 5565555 333 246789999999998876100000000 000000001112344555555554 33
Q ss_pred CcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC---CHHHHHHHHHHHhccC---CcchHHHHHHHHhccCCCHHHHHHH
Q 021051 186 EKGMYERYAALFALRNHGGDEAVSAIIDSLGAT---SALLKHEVAYVLGQLQ---NKAASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 186 ~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~---~~~vr~~a~~~L~~~~---~~~~~~~L~~~l~~~~~~~~vr~~a 259 (318)
+. ..+..++.+||++|.+..++.+...+.+. +..+|..|+.+|.++. +..+.+.|...+.+..+++++|.+|
T Consensus 503 ~~--~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvRiaA 580 (618)
T PF01347_consen 503 DE--EEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVRIAA 580 (618)
T ss_dssp -H--HHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred CH--HHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHHHHH
Confidence 33 35899999999999999999999988665 7899999999999653 2478899999999888899999999
Q ss_pred HHHHhcc-CChhhHHHHHHhhc-CCCHHHHHHHHHHH
Q 021051 260 AEALGSI-ADDQSIGLLKEFAK-DPEPIVSQSCEVAL 294 (318)
Q Consensus 260 ~~aL~~~-~~~~~~~~L~~~l~-~~~~~vr~~a~~aL 294 (318)
...|..- .+...+..+...+. +++.+|+......|
T Consensus 581 ~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 581 YLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 9999997 55667777877664 68899988877665
No 37
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=7.9e-06 Score=75.02 Aligned_cols=258 Identities=17% Similarity=0.124 Sum_probs=156.7
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccC---------C
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQ---------D 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---------~ 78 (318)
...++.+.+.+.-+.+ ++|......+..+.. ....+.+.+.++...-.-|..+++.+..+- .
T Consensus 95 ~~~~~~~~~~~~tps~--~~q~~~~~~l~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~ 172 (569)
T KOG1242|consen 95 ISIIEILLEELDTPSK--SVQRAVSTCLPPLVVLSKGLSGEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLGIESLKE 172 (569)
T ss_pred hHHHHHHHHhcCCCcH--HHHHHHHHHhhhHHHHhhccCHHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcHHhhhhh
Confidence 3467778888888887 777777776655432 245666667778777777777777775433 2
Q ss_pred CCcHHHHHHhhhcCCCCHHHHHH-HHHHH----HhcC---CCCc---HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051 79 AEAIPALEAVLNDFSLHPIVRHE-AAEAL----GAIG---LESN---IPLLKNSLVSDPAQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 79 ~~~~~~L~~~l~~~~~~~~vR~~-a~~~L----~~~~---~~~~---~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~ 147 (318)
...+..|.+.+. +.....++. +..+. +.+| .|.. +|.+.. -..|..+.||.++..+...+.+....
T Consensus 173 ~~~l~~l~~ai~--dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~-~~~d~~~~Vr~Aa~~a~kai~~~~~~ 249 (569)
T KOG1242|consen 173 FGFLDNLSKAII--DKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT-NFGDKINKVREAAVEAAKAIMRCLSA 249 (569)
T ss_pred hhHHHHHHHHhc--ccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH-HhhccchhhhHHHHHHHHHHHHhcCc
Confidence 356778888888 666555543 22222 2333 2333 344444 23688999999999999887721111
Q ss_pred CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCC
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGA 217 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d 217 (318)
. +-+..++.++.-+.+..|.. ...+++.+|.+.. ++.+|.+.+.+.|
T Consensus 250 ~---------------------aVK~llpsll~~l~~~kWrt--K~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~D 306 (569)
T KOG1242|consen 250 Y---------------------AVKLLLPSLLGSLLEAKWRT--KMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWD 306 (569)
T ss_pred c---------------------hhhHhhhhhHHHHHHHhhhh--HHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHcc
Confidence 1 01234555555554445554 6666666665532 3556666666677
Q ss_pred CCHHHHHHHHHHHhccCC----c---ch---------------------------------------HHHHHHHHhccCC
Q 021051 218 TSALLKHEVAYVLGQLQN----K---AA---------------------------------------SAALSDVLRNVNE 251 (318)
Q Consensus 218 ~~~~vr~~a~~~L~~~~~----~---~~---------------------------------------~~~L~~~l~~~~~ 251 (318)
+.+++|.++..++.+++. + .. +|.|...+.+-
T Consensus 307 T~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eR-- 384 (569)
T KOG1242|consen 307 TKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAER-- 384 (569)
T ss_pred CCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhc--
Confidence 777777766666665542 1 12 23333333333
Q ss_pred CHHHHHHHHHHHhccC----C--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 252 HPMVRHEAAEALGSIA----D--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~~----~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+..+++.++...+++. + +..+|.|...+.++.|++|..+..||+.+...-.
T Consensus 385 st~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g 447 (569)
T KOG1242|consen 385 STSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLG 447 (569)
T ss_pred cchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHH
Confidence 4556677777777764 2 2345666667778899999999999976654433
No 38
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=8.8e-07 Score=81.40 Aligned_cols=270 Identities=15% Similarity=0.094 Sum_probs=162.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCC-----CChHHHHHHhccCCCHHHHHHHHHHHhccCC----------------
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRNLKG-----PGPRDALIRATKDSSNLLAHEAAFALGQMQD---------------- 78 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------- 78 (318)
.|..+..+.++ .+|..|+..|-.++. ........+.++|++..||.+|++.+.-++.
T Consensus 202 ~l~~~~~~~D~--~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~ 279 (823)
T KOG2259|consen 202 GLIYLEHDQDF--RVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK 279 (823)
T ss_pred HHHHHhcCCCc--chHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH
Confidence 37777777776 888888888766544 1234555667788888899888776643331
Q ss_pred CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHH-----HHHHHHHHhhhccCccccc
Q 021051 79 AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETC-----ELALERIEKLKASGSDGSS 153 (318)
Q Consensus 79 ~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a-----~~aL~~~~~~~~~~~~~~~ 153 (318)
+.+...+...+. |-...||..|..+||.++.. +-..+.+-|-+---...|+.. ...+-.-+.|-.+.+-..+
T Consensus 280 D~aF~~vC~~v~--D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad 356 (823)
T KOG2259|consen 280 DAAFSSVCRAVR--DRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD 356 (823)
T ss_pred HHHHHHHHHHHh--cCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcccccc
Confidence 134566677777 78888888888888877642 111222211000001111110 0011111112222110000
Q ss_pred cccCCCCcccCC-CCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHH
Q 021051 154 MTERSPFMSVDP-AAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 154 ~l~~~~~~~~~~-~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a 226 (318)
.-. ...+. ...+....+.-.++..+.|.-.+ ||.+|+.++..+.. ..++..|...++|....||..|
T Consensus 357 vps----ee~d~~~~siI~sGACGA~VhGlEDEf~E--VR~AAV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 357 VPS----EEDDEEEESIIPSGACGALVHGLEDEFYE--VRRAAVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred Cch----hhccccccccccccccceeeeechHHHHH--HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHH
Confidence 000 00000 00011223344556666555444 69999999998854 4788999999999999999999
Q ss_pred HHHHhccCC-----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhHHHHHH-hhcC--CCHHHHHHHHHHHHh
Q 021051 227 AYVLGQLQN-----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSIGLLKE-FAKD--PEPIVSQSCEVALSM 296 (318)
Q Consensus 227 ~~~L~~~~~-----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~~~L~~-~l~~--~~~~vr~~a~~aL~~ 296 (318)
+.+|..+.. ++.++.+...+.|. ++++|.+.-+-|+... +.+++..+.. +++. .-|+=|.....++..
T Consensus 431 i~aL~~Is~~l~i~eeql~~il~~L~D~--s~dvRe~l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~ 508 (823)
T KOG2259|consen 431 IFALTMISVHLAIREEQLRQILESLEDR--SVDVREALRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGR 508 (823)
T ss_pred HHHHHHHHHHheecHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHH
Confidence 999998763 57889999999998 8999999888887754 5556665554 3332 234446677778887
Q ss_pred chhhhc
Q 021051 297 LEYEQL 302 (318)
Q Consensus 297 l~~~~~ 302 (318)
|+.+..
T Consensus 509 iGqnH~ 514 (823)
T KOG2259|consen 509 IGQNHR 514 (823)
T ss_pred HhccCh
Confidence 776543
No 39
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.52 E-value=2.9e-05 Score=74.46 Aligned_cols=263 Identities=17% Similarity=0.148 Sum_probs=180.4
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---- 78 (318)
.....++.|++.|.+.+. .....++..|.++.- ..+++.|.+++.+++..++..+++.|..+..
T Consensus 287 ~~~~iV~~Lv~~Ldr~n~--ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~ 364 (708)
T PF05804_consen 287 VNKGIVSLLVKCLDRENE--ELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL 364 (708)
T ss_pred HhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH
Confidence 456688889999998876 888888888887653 5789999999999999999999999988774
Q ss_pred ------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 79 ------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 79 ------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
...+|.|+.++. +++ .|..++..|.++. ..+++|.+.+.+...+++.+...++..+.++.
T Consensus 365 R~~mV~~GlIPkLv~LL~--d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa 440 (708)
T PF05804_consen 365 RSQMVSLGLIPKLVELLK--DPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLA 440 (708)
T ss_pred HHHHHHCCCcHHHHHHhC--CCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHh
Confidence 367899999999 443 4455666666654 34688999887777788888777766666665
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------hhHHHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------DEAVSAIID 213 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------~~~~~~l~~ 213 (318)
. . . .....++ ..+.++.|++.......+. .++.++++.. .+.+..|..
T Consensus 441 ~-~-~-rnaqlm~---------------~g~gL~~L~~ra~~~~D~l-----LlKlIRNiS~h~~~~k~~f~~~i~~L~~ 497 (708)
T PF05804_consen 441 L-N-K-RNAQLMC---------------EGNGLQSLMKRALKTRDPL-----LLKLIRNISQHDGPLKELFVDFIGDLAK 497 (708)
T ss_pred c-C-H-HHHHHHH---------------hcCcHHHHHHHHHhcccHH-----HHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 1 0 0 0000000 1234666665554433332 2333333321 134444445
Q ss_pred HhC-CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh----------hh
Q 021051 214 SLG-ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD----------QS 271 (318)
Q Consensus 214 ~l~-d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------~~ 271 (318)
.+. ..+++...+++..|+.+.. ...+|+|...+.......++..+++..+|.+..+ +.
T Consensus 498 ~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgl 577 (708)
T PF05804_consen 498 IVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGL 577 (708)
T ss_pred HhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCCh
Confidence 453 3478888999999998863 3568999999976555678999999999987632 44
Q ss_pred HHHHHHhhcC--CCHHHHHHHHHHHHhchhhhcch
Q 021051 272 IGLLKEFAKD--PEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 272 ~~~L~~~l~~--~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++.|..++++ +|.+.-.++..++.++-.+....
T Consensus 578 i~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr 612 (708)
T PF05804_consen 578 IPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR 612 (708)
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH
Confidence 7777787654 56777788888888777765533
No 40
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.48 E-value=9.2e-06 Score=75.60 Aligned_cols=250 Identities=15% Similarity=0.120 Sum_probs=165.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhccCCCHHHHHHHHHHHhccC------CCCcHHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATKDSSNLLAHEAAFALGQMQ------DAEAIPALE 86 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~ 86 (318)
+.-.+..-|++.+. ..---|+..|..+.+++ ..+.+..+|++.-|++|..|+-.+.+.- -..++|.|.
T Consensus 110 ~tn~~rkdl~S~n~--ye~giAL~GLS~fvTpdLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~ 187 (877)
T KOG1059|consen 110 TTNLLRKDLNSSNV--YEVGLALSGLSCIVTPDLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLV 187 (877)
T ss_pred HHHHHHHHhccCcc--chhhheecccccccCchhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHH
Confidence 34445566777765 56666777787777764 5666777889999999999999987753 235789999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcC--CCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051 87 AVLNDFSLHPIVRHEAAEALGAIG--LES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF 160 (318)
Q Consensus 87 ~~l~~~~~~~~vR~~a~~~L~~~~--~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~ 160 (318)
+-|. |+||.|.-+|+..++.+. +|+ ..|.|.+++.+..+..+---.+.-++.+.
T Consensus 188 EkLe--DpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLt------------------ 247 (877)
T KOG1059|consen 188 EKLE--DPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALT------------------ 247 (877)
T ss_pred Hhcc--CCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhcc------------------
Confidence 9999 999999999999999875 333 45778886665555544443444444332
Q ss_pred cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C--C-----hhHHHHHHHHhCCCCHHHHHHHHHH
Q 021051 161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G--G-----DEAVSAIIDSLGATSALLKHEVAYV 229 (318)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~--~-----~~~~~~l~~~l~d~~~~vr~~a~~~ 229 (318)
|..+--.+..++.|..++.+... ..+-+.+++++-.. | + .-++..|..++.|+|+.++.-.+.+
T Consensus 248 ----plEPRLgKKLieplt~li~sT~A-mSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 248 ----PLEPRLGKKLIEPITELMESTVA-MSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred ----ccCchhhhhhhhHHHHHHHhhHH-HHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 11111124567888888854433 23455555555333 1 2 1355677778899999999999999
Q ss_pred HhccCC--cch----HHHHHHHHhccCCCHHHHHHHHHHHhccCChh----hHHHHHHh-hcCCCHHHHHHHHHHHH
Q 021051 230 LGQLQN--KAA----SAALSDVLRNVNEHPMVRHEAAEALGSIADDQ----SIGLLKEF-AKDPEPIVSQSCEVALS 295 (318)
Q Consensus 230 L~~~~~--~~~----~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~-l~~~~~~vr~~a~~aL~ 295 (318)
++++.. +.+ .+.++..+.|. |+.+|..|+.-|-.+-+.+ .+..|... ...+....|.+.+..+=
T Consensus 323 m~KI~ktHp~~Vqa~kdlIlrcL~Dk--D~SIRlrALdLl~gmVskkNl~eIVk~LM~~~~~ae~t~yrdell~~II 397 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAHKDLILRCLDDK--DESIRLRALDLLYGMVSKKNLMEIVKTLMKHVEKAEGTNYRDELLTRII 397 (877)
T ss_pred HHHHhhhCHHHHHHhHHHHHHHhccC--CchhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 988764 222 36688888887 8999999999887775443 44445543 33344456655544433
No 41
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=1.8e-06 Score=80.66 Aligned_cols=259 Identities=14% Similarity=0.089 Sum_probs=164.0
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCH-HHHHHHHHHHhccCCCCc---------
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSN-LLAHEAAFALGQMQDAEA--------- 81 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~--------- 81 (318)
-++..|.+++| ..+-.|.+.++.+.. |+.+..|.....++.+ .++...+.++|.+...-.
T Consensus 94 ~il~tL~~~ep--~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN 171 (859)
T KOG1241|consen 94 NILRTLGSPEP--RRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSN 171 (859)
T ss_pred HHHHHcCCCCC--CccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHh
Confidence 35667888887 777777777776543 5667777776655544 599999999999875321
Q ss_pred --HHHHHHhhhcCCCCHHHHHHHHHHHHh--------cCCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051 82 --IPALEAVLNDFSLHPIVRHEAAEALGA--------IGLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 82 --~~~L~~~l~~~~~~~~vR~~a~~~L~~--------~~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~ 147 (318)
+-.++.-....+++..||.+|..+|-+ +.++. ......+ ..+.+|.+|+.++..+|.++.. +..
T Consensus 172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcE-atq~~d~~i~~aa~~ClvkIm~-LyY 249 (859)
T KOG1241|consen 172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCE-ATQSPDEEIQVAAFQCLVKIMS-LYY 249 (859)
T ss_pred HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeee-cccCCcHHHHHHHHHHHHHHHH-HHH
Confidence 222222222347889999999999854 22211 2344445 5678899999999999999871 100
Q ss_pred CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------------C------
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----------------G------ 204 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----------------~------ 204 (318)
..- . ..+.+..+..-+..++++++.+ ...+++-=..++ .
T Consensus 250 ~~m----------~------~yM~~alfaitl~amks~~deV--alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~ 311 (859)
T KOG1241|consen 250 EFM----------E------PYMEQALFAITLAAMKSDNDEV--ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKY 311 (859)
T ss_pred HHH----------H------HHHHHHHHHHHHHHHcCCcHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhH
Confidence 000 0 0000001222223334444433 333332211111 0
Q ss_pred ------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhcc---CC----cchHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 205 ------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQL---QN----KAASAALSDVLRNVNEHPMVRHEAAEALG 264 (318)
Q Consensus 205 ------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~---~~----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~ 264 (318)
...+|.|.+.|. +++|....+|-.+|.-+ .. +.++|++.+.++++ ||.-|.+|+-++|
T Consensus 312 fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~Iv~~Vl~Fiee~i~~p--dwr~reaavmAFG 389 (859)
T KOG1241|consen 312 FARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDDIVPHVLPFIEENIQNP--DWRNREAAVMAFG 389 (859)
T ss_pred HHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcccchhhhHHHHHHhcCCc--chhhhhHHHHHHH
Confidence 146677777773 24677777777776644 23 34566666666666 9999999999999
Q ss_pred ccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 265 SIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 265 ~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+- . .++++.++.+..|+.-.||..+.|.|+++-....
T Consensus 390 SIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~ 438 (859)
T KOG1241|consen 390 SILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP 438 (859)
T ss_pred hhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch
Confidence 983 1 3578889998899999999999999999977655
No 42
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1e-05 Score=75.49 Aligned_cols=57 Identities=16% Similarity=0.123 Sum_probs=30.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----CChHHHHHHhccCCCHHHHHHHHHHH
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----PGPRDALIRATKDSSNLLAHEAAFAL 73 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL 73 (318)
...+-|...|++.+. ..+|.-++.-+|-.+- .+.-+.|...|..++...-.+|..++
T Consensus 413 ~~~~yL~~~Lk~~~~-e~v~hG~cLGlGLa~mGSa~~eiYe~lKevLy~D~AvsGEAAgi~M 473 (929)
T KOG2062|consen 413 GITDYLLQQLKTAEN-EVVRHGACLGLGLAGMGSANEEIYEKLKEVLYNDSAVSGEAAGIAM 473 (929)
T ss_pred cHHHHHHHHHHhccc-hhhhhhhhhhccchhcccccHHHHHHHHHHHhccchhhhhHHHHhh
Confidence 366777777776663 4677777776655432 23444555555433333333333333
No 43
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.1e-05 Score=73.04 Aligned_cols=270 Identities=17% Similarity=0.159 Sum_probs=152.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhccCCCHHHHHHHHHHHhccCC--C----CcHHHHHH
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATKDSSNLLAHEAAFALGQMQD--A----EAIPALEA 87 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~~~L~~ 87 (318)
+..|..-|.+++. .+...|+.+++.+++++ ..+.+.+++++.++.+|..|+.++.++.. + ..++...+
T Consensus 109 tNslknDL~s~nq--~vVglAL~alg~i~s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~ 186 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQ--YVVGLALCALGNICSPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK 186 (866)
T ss_pred HHHHHhhccCCCe--eehHHHHHHhhccCCHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH
Confidence 3345566778876 88999999999999865 45566678899999999999988876532 1 23344455
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcCC---------CCcHHHHHhh---hcc-----------CCCHHHHHHHHHHHHHHHh-
Q 021051 88 VLNDFSLHPIVRHEAAEALGAIGL---------ESNIPLLKNS---LVS-----------DPAQEVRETCELALERIEK- 143 (318)
Q Consensus 88 ~l~~~~~~~~vR~~a~~~L~~~~~---------~~~~~~L~~~---l~~-----------d~~~~vr~~a~~aL~~~~~- 143 (318)
+|. +.+..|-.+.+..+-.+.. .+..+.|... +.+ =+||.++..+.+.|+-+|.
T Consensus 187 lL~--ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~ 264 (866)
T KOG1062|consen 187 LLC--EKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQN 264 (866)
T ss_pred HHh--hcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCC
Confidence 555 5555554444443322211 1122222221 111 1356666656555555441
Q ss_pred -----------------hhccCccc-----cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051 144 -----------------LKASGSDG-----SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN 201 (318)
Q Consensus 144 -----------------~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~ 201 (318)
..++.... -++... +-...+...+ ...++..|-++|.+++..+ |+.|+..|.+
T Consensus 265 d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~T--I~~I~~~~~L-rvlainiLgkFL~n~d~Ni--rYvaLn~L~r 339 (866)
T KOG1062|consen 265 DADASDLMNDILAQVATNTDSSKNAGNAILYECVRT--IMDIRSNSGL-RVLAINILGKFLLNRDNNI--RYVALNMLLR 339 (866)
T ss_pred CccHHHHHHHHHHHHHhcccccccchhHHHHHHHHH--HHhccCCchH-HHHHHHHHHHHhcCCccce--eeeehhhHHh
Confidence 00000000 000000 0000000000 1235667778887877776 8888888877
Q ss_pred CC--ChhH----HHHHHHHhCCCCHHHHHHHHHHHhccCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhccC----
Q 021051 202 HG--GDEA----VSAIIDSLGATSALLKHEVAYVLGQLQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGSIA---- 267 (318)
Q Consensus 202 ~~--~~~~----~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---- 267 (318)
.- ++.+ ...+++||+|+|..+|+.|+..+-.+-++. .+..|+.++... ++..|...+..+..+.
T Consensus 340 ~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~mv~eLl~fL~~~--d~~~k~~~as~I~~laEkfa 417 (866)
T KOG1062|consen 340 VVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESNVRVMVKELLEFLESS--DEDFKADIASKIAELAEKFA 417 (866)
T ss_pred hhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHhcC
Confidence 62 2333 356889999999999999999998876643 456677777765 6777765555444432
Q ss_pred Chh--hHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 268 DDQ--SIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 268 ~~~--~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
..+ -++.+.+.+......|+..+...+-++-
T Consensus 418 P~k~W~idtml~Vl~~aG~~V~~dv~~nll~LI 450 (866)
T KOG1062|consen 418 PDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLI 450 (866)
T ss_pred CcchhHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 222 3555555555444455555554444443
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=3.8e-05 Score=72.32 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=55.3
Q ss_pred HhCCCCHHHHHHHHHHHhccCCc----chHHHHHHHHhccCCCHHHHHHHHHHHhccC----------------------
Q 021051 214 SLGATSALLKHEVAYVLGQLQNK----AASAALSDVLRNVNEHPMVRHEAAEALGSIA---------------------- 267 (318)
Q Consensus 214 ~l~d~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---------------------- 267 (318)
++.+.++.|..++++++..+.++ .....|+.++.. ++.+|+..+..+..+.
T Consensus 295 Ll~S~n~sVVmA~aql~y~lAP~~~~~~i~kaLvrLLrs---~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~ 371 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLAPKNQVTKIAKALVRLLRS---NREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPT 371 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhCCHHHHHHHHHHHHHHHhc---CCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHH
Confidence 44567888888999999888875 345667777765 3556665555555443
Q ss_pred --------------C----hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 268 --------------D----DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 268 --------------~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+ ...+..+..+.++.+..+...++.||+++...
T Consensus 372 ~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~ 422 (968)
T KOG1060|consen 372 QVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASR 422 (968)
T ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHh
Confidence 1 12344555667777767888888888877654
No 45
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.36 E-value=3.4e-05 Score=70.36 Aligned_cols=257 Identities=19% Similarity=0.158 Sum_probs=162.7
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----C----ChHHHHHHhccCCCHHHHHHHHHHHhccCC--C----CcH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----P----GPRDALIRATKDSSNLLAHEAAFALGQMQD--A----EAI 82 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~----~~~ 82 (318)
..+.|-..|.++-. .+...+++.+..+.. + ..+..|..+|++.....|..|++.|.++.- + .+-
T Consensus 265 ~rpfL~~wls~k~e--mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN 342 (898)
T COG5240 265 LRPFLNSWLSDKFE--MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCN 342 (898)
T ss_pred HHHHHHHHhcCcch--hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecC
Confidence 34445555555543 566666666555322 1 244555556678888889999999887652 1 234
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhh---hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCC
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNS---LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP 159 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~---l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~ 159 (318)
+.+..++. |.+..+-..|+..|-+.|..+.++.|.+. +.+|-+...+..++.++..+.. .
T Consensus 343 ~evEsLIs--d~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl--~------------- 405 (898)
T COG5240 343 KEVESLIS--DENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSL--L------------- 405 (898)
T ss_pred hhHHHHhh--cccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHh--h-------------
Confidence 66777777 78888888899999888888777665552 2345555566666666665541 0
Q ss_pred CcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCC-CCHHHHHHHHHHHhc
Q 021051 160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGA-TSALLKHEVAYVLGQ 232 (318)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d-~~~~vr~~a~~~L~~ 232 (318)
.|..+ ...+..|...|.+. ..+.-+..++.++..+- .+.+++.|...+.| ..+.+-...+..||+
T Consensus 406 ----Fp~k~---~s~l~FL~~~L~~e-Gg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~ 477 (898)
T COG5240 406 ----FPSKK---LSYLDFLGSSLLQE-GGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGR 477 (898)
T ss_pred ----CcHHH---HHHHHHHHHHHHhc-ccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcc
Confidence 00000 11344455555442 22223666677665541 23566666666655 357777788888888
Q ss_pred cCCc-----chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-------hh-hHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 233 LQNK-----AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-------DQ-SIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 233 ~~~~-----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-------~~-~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
-++. ..+-.+...+-=. +.-||.+|+.+|.+++- ++ ....|.++++|.+..||..|.-+|..+..
T Consensus 478 EgP~a~~P~~yvrhIyNR~iLE--N~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~ 555 (898)
T COG5240 478 EGPRAKTPGKYVRHIYNRLILE--NNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRL 555 (898)
T ss_pred cCCCCCCcchHHHHHHHHHHHh--hhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhh
Confidence 7652 2344444444333 67899999999988772 23 45566679999999999999999998875
Q ss_pred hhc
Q 021051 300 EQL 302 (318)
Q Consensus 300 ~~~ 302 (318)
..+
T Consensus 556 ~da 558 (898)
T COG5240 556 SDA 558 (898)
T ss_pred hhh
Confidence 433
No 46
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.34 E-value=3.5e-05 Score=65.22 Aligned_cols=164 Identities=19% Similarity=0.183 Sum_probs=101.1
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
.++.|+.+|+. ..||.++..+..++++.. +.+.++.+.. +..++++.+|..|..++.++.. .....
T Consensus 13 ~l~~Ll~lL~~-t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~-lL~~p~~~vr~~AL~aL~Nls~--~~en~ 88 (254)
T PF04826_consen 13 ELQKLLCLLES-TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGS-LLNDPNPSVREKALNALNNLSV--NDENQ 88 (254)
T ss_pred HHHHHHHHHhc-CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHH-HcCCCChHHHHHHHHHHHhcCC--ChhhH
Confidence 34455555552 345555555555555443 2345566666 5566777777777777776540 00000
Q ss_pred ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHH
Q 021051 151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALL 222 (318)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~v 222 (318)
.. -+..++.+.+..........++.+++.+|.++.. ...++.+..++...+..+
T Consensus 89 ----------~~--------Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~ 150 (254)
T PF04826_consen 89 ----------EQ--------IKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKT 150 (254)
T ss_pred ----------HH--------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHH
Confidence 00 0123455555544443333468889999998853 256778888888889999
Q ss_pred HHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 223 KHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 223 r~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
|..+++.|..+.. .++...++.++... ++.++-..++.-..++.
T Consensus 151 k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~-~~~~~l~~~l~~~~ni~ 204 (254)
T PF04826_consen 151 KVQVLKVLVNLSENPDMTRELLSAQVLSSFLSLFNSS-ESKENLLRVLTFFENIN 204 (254)
T ss_pred HHHHHHHHHHhccCHHHHHHHHhccchhHHHHHHccC-CccHHHHHHHHHHHHHH
Confidence 9999999998864 34566777777653 36777777777777763
No 47
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=3e-05 Score=72.30 Aligned_cols=233 Identities=15% Similarity=0.125 Sum_probs=151.4
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C----ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P----GPRDALIRATKDSSNLLAHEAAFALGQMQDA------ 79 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 79 (318)
.+.-.....+..+|.+..+ ++|.+|+-.+.+..- | ...+.|.+-|.|+||.|..+|+..+.++...
T Consensus 140 dLARDLa~Dv~tLL~sskp--YvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL 217 (877)
T KOG1059|consen 140 DLARDLADDVFTLLNSSKP--YVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL 217 (877)
T ss_pred hhhHHHHHHHHHHHhcCch--HHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence 3444567788899999998 999999999988654 2 4567778888999999999999999887632
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS 153 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~ 153 (318)
...|.+.+++.+ ..+-++-...+..++.+.. ...++.|..++.+-..-.+-..++.++....
T Consensus 218 ~LAP~ffklltt-SsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s----------- 285 (877)
T KOG1059|consen 218 QLAPLFYKLLVT-SSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVS----------- 285 (877)
T ss_pred cccHHHHHHHhc-cCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeeh-----------
Confidence 457889999995 4555555677777776642 3456666663322222233333333332111
Q ss_pred cccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--h----hHHHHHHHHhCCCCHHHHHHHH
Q 021051 154 MTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--D----EAVSAIIDSLGATSALLKHEVA 227 (318)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~----~~~~~l~~~l~d~~~~vr~~a~ 227 (318)
+....+.....-..-+..|..++.+.+... ++.++-+++++.. + .--..++++|.|.|+.+|..|+
T Consensus 286 ------~s~g~~d~~asiqLCvqKLr~fiedsDqNL--KYlgLlam~KI~ktHp~~Vqa~kdlIlrcL~DkD~SIRlrAL 357 (877)
T KOG1059|consen 286 ------MSSGMSDHSASIQLCVQKLRIFIEDSDQNL--KYLGLLAMSKILKTHPKAVQAHKDLILRCLDDKDESIRLRAL 357 (877)
T ss_pred ------hccCCCCcHHHHHHHHHHHhhhhhcCCccH--HHHHHHHHHHHhhhCHHHHHHhHHHHHHHhccCCchhHHHHH
Confidence 000000000000123566777788888886 9999999988853 2 2235678899999999999999
Q ss_pred HHHhccCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 228 YVLGQLQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 228 ~~L~~~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
..|-.|-+++ .+..|+..+... +....|.+.+..+..+.
T Consensus 358 dLl~gmVskkNl~eIVk~LM~~~~~a-e~t~yrdell~~II~iC 400 (877)
T KOG1059|consen 358 DLLYGMVSKKNLMEIVKTLMKHVEKA-EGTNYRDELLTRIISIC 400 (877)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHh
Confidence 9998776543 445555555544 23467766666555554
No 48
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.26 E-value=7e-06 Score=61.08 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=43.0
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
..++.|.+++.+. ++.++..++.+|+++.. .+.++.|.+.+++++..++..+.++|.++
T Consensus 49 ~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 49 GGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred CChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5666777777665 67777777777777642 23577888888888888999998888765
No 49
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=98.24 E-value=2.4e-05 Score=75.28 Aligned_cols=255 Identities=18% Similarity=0.187 Sum_probs=155.4
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccC---C---------CChHHHHHHhccCCCHHHHHHHHHHHhccC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLK---G---------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------ 77 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 77 (318)
+.++.....+++.. |.+|..+..-...+. . ....+.+..+..|.+..+|.+.+.......
T Consensus 355 ~~~~~~~~l~~~~~--~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~ 432 (759)
T KOG0211|consen 355 QLVPPVSNLLKDEE--WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKE 432 (759)
T ss_pred cchhhHHHHhcchh--hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcC
Confidence 34555566666554 355655544433321 1 123455556667777777776666554431
Q ss_pred --CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---C--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051 78 --DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---G--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144 (318)
Q Consensus 78 --~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~ 144 (318)
.....|.+...++ +.++.||...+.-+... . ....+|.+.. +..|..+++|.+..+.+..+..
T Consensus 433 ~ti~~llp~~~~~l~--de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~e-l~~d~~wRvr~ail~~ip~la~- 508 (759)
T KOG0211|consen 433 RTISELLPLLIGNLK--DEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVE-LAEDLLWRVRLAILEYIPQLAL- 508 (759)
T ss_pred cCccccChhhhhhcc--hhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhh-hccchhHHHHHHHHHHHHHHHH-
Confidence 1233455566666 77778877777543321 1 1234566666 5566677788777777766550
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----ChhHHHHHHHHhC
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G----GDEAVSAIIDSLG 216 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~----~~~~~~~l~~~l~ 216 (318)
..+ ..+.++...+.+...+.+...++ |..|...+..+ | ....++.+.....
T Consensus 509 q~~-------------------~~~~~~~~~~l~~~~l~d~v~~I--r~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~ 567 (759)
T KOG0211|consen 509 QLG-------------------VEFFDEKLAELLRTWLPDHVYSI--REAAARNLPALVETFGSEWARLEEIPKLLAMDL 567 (759)
T ss_pred hhh-------------------hHHhhHHHHHHHHhhhhhhHHHH--HHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhc
Confidence 000 00011234455555555544444 77777666543 3 2345566666666
Q ss_pred CCCHHHHHHHHHHHhccC----C----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--------ChhhHHHHHHhhc
Q 021051 217 ATSALLKHEVAYVLGQLQ----N----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--------DDQSIGLLKEFAK 280 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~ 280 (318)
+++..+|...+.++..+. . +..+|.+..+..|+ .++||..+++.|-.+. +....+.+..+..
T Consensus 568 q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~--vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~ 645 (759)
T KOG0211|consen 568 QDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDP--VANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSS 645 (759)
T ss_pred CcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCC--chhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhcc
Confidence 667888877766665432 2 45678888888887 8999999999999886 2346777777888
Q ss_pred CCCHHHHHHHHHHHHhchh
Q 021051 281 DPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 281 ~~~~~vr~~a~~aL~~l~~ 299 (318)
|++..||..|..|++.+..
T Consensus 646 d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 646 DQELDVRYRAILAFGSIEL 664 (759)
T ss_pred CcccchhHHHHHHHHHHHH
Confidence 9999999999998886643
No 50
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=98.20 E-value=0.00015 Score=69.68 Aligned_cols=208 Identities=16% Similarity=0.197 Sum_probs=135.4
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---CcHH
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA---EAIP 83 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~---~~~~ 83 (318)
+......|..-+.++..+..+|.-|+-.+|++|. ++.-..+++.|++++..|+.+|.++||.+... ..+|
T Consensus 815 s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLp 894 (1233)
T KOG1824|consen 815 SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLP 894 (1233)
T ss_pred chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHH
Confidence 3344555555555555445789999999999875 46777888999999999999999999998863 4577
Q ss_pred HHHHhhhcCCCCHHHHHHHHH-HHHhcCC---CCcHHHHHhhhc---cCCCHHHHHHHHHHHHHHHhhhccCcccccccc
Q 021051 84 ALEAVLNDFSLHPIVRHEAAE-ALGAIGL---ESNIPLLKNSLV---SDPAQEVRETCELALERIEKLKASGSDGSSMTE 156 (318)
Q Consensus 84 ~L~~~l~~~~~~~~vR~~a~~-~L~~~~~---~~~~~~L~~~l~---~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~ 156 (318)
.+++.+.++.....+-..++. .+..-.. ...++.+-..+. .......|...+++||++. .
T Consensus 895 fil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~-l------------ 961 (1233)
T KOG1824|consen 895 FILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV-L------------ 961 (1233)
T ss_pred HHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH-h------------
Confidence 777777733233333222222 2222221 122333222222 2335667999999999887 1
Q ss_pred CCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHH
Q 021051 157 RSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a 226 (318)
.+ ++..+|.|...+.++.... |..++.++...-. ...+..+..+++|++..||+.|
T Consensus 962 ------~e------pesLlpkL~~~~~S~a~~~--rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 962 ------IE------PESLLPKLKLLLRSEASNT--RSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred ------CC------hHHHHHHHHHHhcCCCcch--hhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 11 2456888999998888776 8888777655421 2444566677899999999999
Q ss_pred HHHHhccCC------cchHHHHHHHHhc
Q 021051 227 AYVLGQLQN------KAASAALSDVLRN 248 (318)
Q Consensus 227 ~~~L~~~~~------~~~~~~L~~~l~~ 248 (318)
+.++..... .+.+|.|+..+-+
T Consensus 1028 Lvv~nSaahNKpslIrDllpeLLp~Ly~ 1055 (1233)
T KOG1824|consen 1028 LVVLNSAAHNKPSLIRDLLPELLPLLYS 1055 (1233)
T ss_pred HHHHHHHHccCHhHHHHHHHHHHHHHHH
Confidence 999876532 2345666655543
No 51
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.19 E-value=0.00017 Score=61.03 Aligned_cols=212 Identities=14% Similarity=0.100 Sum_probs=137.5
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
++....+.|..+|+..+ ++.++..++.+++.... -..++.+...++++++.+|..|+++|..+...
T Consensus 9 l~~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 67788899999999654 23899999999988754 36788889999999999999999999977642
Q ss_pred -----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC--------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhc
Q 021051 80 -----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE--------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKA 146 (318)
Q Consensus 80 -----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~--------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~ 146 (318)
..++.+.+.+.....+..++..++++|.++... ..++.|.. ++...+..+|..+...|.++. +.+
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~-LL~~G~~~~k~~vLk~L~nLS-~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLS-LLSSGSEKTKVQVLKVLVNLS-ENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHH-HHHcCChHHHHHHHHHHHHhc-cCH
Confidence 235555555553345789999999999998632 36778888 556778899999999999887 110
Q ss_pred cCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC-----CHH
Q 021051 147 SGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGAT-----SAL 221 (318)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~-----~~~ 221 (318)
.. ..+ +...++.+.+..++..+.... ....++..+.++.. .++.+ ++.
T Consensus 166 ~~--~~~---------------Ll~~q~~~~~~~Lf~~~~~~~-~l~~~l~~~~ni~~---------~~~~~~~~~~~~~ 218 (254)
T PF04826_consen 166 DM--TRE---------------LLSAQVLSSFLSLFNSSESKE-NLLRVLTFFENINE---------NIKKEAYVFVQDD 218 (254)
T ss_pred HH--HHH---------------HHhccchhHHHHHHccCCccH-HHHHHHHHHHHHHH---------hhCcccceecccc
Confidence 00 001 112346677777775553332 34455555554422 11111 111
Q ss_pred HHHHHHHHHhccCCc-chHHHHHHHHhccCCCHHHHHH
Q 021051 222 LKHEVAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHE 258 (318)
Q Consensus 222 vr~~a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~ 258 (318)
.....+..+ +++. ...+.|..+..++ |++||..
T Consensus 219 ~~~~~L~~~--~~e~~~~~~~l~~l~~h~--d~ev~~~ 252 (254)
T PF04826_consen 219 FSEDSLFSL--FGESSQLAKKLQALANHP--DPEVKEQ 252 (254)
T ss_pred CCchhHHHH--HccHHHHHHHHHHHHcCC--CHHHhhh
Confidence 111222211 2332 3566777777776 8888864
No 52
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=6.5e-06 Score=75.90 Aligned_cols=216 Identities=19% Similarity=0.151 Sum_probs=140.0
Q ss_pred HHHhccCCCHHHHHHHHHHHhccCCC-----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------------
Q 021051 54 LIRATKDSSNLLAHEAAFALGQMQDA-----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------------- 112 (318)
Q Consensus 54 L~~~l~d~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------------- 112 (318)
|+.+..+.++.||..|+.+|-.++.. .......+.+. |++..||.+|++.+.-+++-
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~ls--D~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D 280 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLS--DDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD 280 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH
Confidence 56666788888888888886555531 23566677777 78888888888877654421
Q ss_pred CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CCcC
Q 021051 113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EEKG 188 (318)
Q Consensus 113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~ 188 (318)
+++..+.. ...|-...||-.|+.+||.+.. -+... ...+|-+-+-+ ....
T Consensus 281 ~aF~~vC~-~v~D~sl~VRV~AaK~lG~~~~--vSee~-----------------------i~QTLdKKlms~lRRkr~a 334 (823)
T KOG2259|consen 281 AAFSSVCR-AVRDRSLSVRVEAAKALGEFEQ--VSEEI-----------------------IQQTLDKKLMSRLRRKRTA 334 (823)
T ss_pred HHHHHHHH-HHhcCceeeeehHHHHhchHHH--hHHHH-----------------------HHHHHHHHHhhhhhhhhhc
Confidence 13444555 4567778888888888877651 00000 00111111100 0000
Q ss_pred hHHHHHHHHHHHhCC----------------------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHH
Q 021051 189 MYERYAALFALRNHG----------------------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASA 240 (318)
Q Consensus 189 ~~~r~~a~~~L~~~~----------------------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~ 240 (318)
..|...+..=|.+. ...+...+++.+.|..-+||.+|+.++..+.- ..++.
T Consensus 335 -hkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~ald 413 (823)
T KOG2259|consen 335 -HKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVRALD 413 (823)
T ss_pred -ccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 00111222222110 01234556777888889999999999998753 35789
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccC-----ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 241 ALSDVLRNVNEHPMVRHEAAEALGSIA-----DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.|++.+.|. ...||..|+.+|-.|. ..+.++.+.+.+.|..++||.++..-|+..+..
T Consensus 414 fLvDMfNDE--~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL~~~~~~ 476 (823)
T KOG2259|consen 414 FLVDMFNDE--IEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELLKNARVS 476 (823)
T ss_pred HHHHHhccH--HHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence 999999987 7899999999998886 356788888999999999999988888776544
No 53
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.15 E-value=5.1e-05 Score=71.10 Aligned_cols=222 Identities=17% Similarity=0.163 Sum_probs=140.1
Q ss_pred HhccCCCHHHHHHHHHHHhccCC-------CC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CC
Q 021051 56 RATKDSSNLLAHEAAFALGQMQD-------AE----AIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ES 113 (318)
Q Consensus 56 ~~l~d~~~~vr~~a~~aL~~~~~-------~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~ 113 (318)
..|+++++.+|..|+..++.+.. .. .--.|.+.|. +++|.|-...+.++..+-+ .+
T Consensus 806 ~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylg--eeypEvLgsILgAikaI~nvigm~km~pPi~d 883 (1172)
T KOG0213|consen 806 WRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLG--EEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD 883 (1172)
T ss_pred HHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcC--cccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence 34456666666666665554321 00 0122334444 5555555444444433211 23
Q ss_pred cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCcc---HHHHHHHHcCCCcChH
Q 021051 114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSS---VDMLREVLLGEEKGMY 190 (318)
Q Consensus 114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~~~~~ 190 (318)
.+|.|.. .+++.+..|..+++.-++.++ ..+.+ +. +.++. .=.|+++|..-+..+
T Consensus 884 llPrltP-ILknrheKVqen~IdLvg~Ia--drgpE----------~v--------~aREWMRIcfeLlelLkahkK~i- 941 (1172)
T KOG0213|consen 884 LLPRLTP-ILKNRHEKVQENCIDLVGTIA--DRGPE----------YV--------SAREWMRICFELLELLKAHKKEI- 941 (1172)
T ss_pred hcccchH-hhhhhHHHHHHHHHHHHHHHH--hcCcc----------cC--------CHHHHHHHHHHHHHHHHHHHHHH-
Confidence 5566666 446777888888888888877 11111 00 01111 224677777777776
Q ss_pred HHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHH---HHHHHhccCCc-chHHHHHHHHhccCCCHHHHHHHHHH
Q 021051 191 ERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHE---VAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHEAAEA 262 (318)
Q Consensus 191 ~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~---a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~a~~a 262 (318)
|++|+..+|.+ |..+.+..|.+.|+..+-..|.. |+...++.+.+ .++|.|+.-...+ +.+|+...+++
T Consensus 942 -RRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP--e~nVQnGVLka 1018 (1172)
T KOG0213|consen 942 -RRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP--EANVQNGVLKA 1018 (1172)
T ss_pred -HHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc--hhHHHHhHHHH
Confidence 99999999876 56788888888887655555543 44455565555 6788888888876 78899988888
Q ss_pred Hhcc----CCh------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 263 LGSI----ADD------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 263 L~~~----~~~------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
|..+ |.. ...|.|..++-|.+..-|+.|..++..+..+..+.
T Consensus 1019 lsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~ 1070 (1172)
T KOG0213|consen 1019 LSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGT 1070 (1172)
T ss_pred HHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCc
Confidence 8764 321 35788888999999999999999999887665543
No 54
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=98.15 E-value=2.9e-05 Score=57.71 Aligned_cols=90 Identities=26% Similarity=0.338 Sum_probs=55.0
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccCCC-----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQDA-----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------- 111 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------- 111 (318)
.++.|.+.+.+.++.+|..++++|+.+... ..++.+.+++. ++++.++..++.+|+++..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~v~~~a~~~L~~l~~~~~~~~~ 85 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK--SEDEEVVKAALWALRNLAAGPEDNKL 85 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHh--CCCHHHHHHHHHHHHHHccCcHHHHH
Confidence 344444444444444555555554444322 55666666666 5666777777776666542
Q ss_pred ----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 112 ----ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 112 ----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+.++.|.+ +..+++..++..+.++|.++.
T Consensus 86 ~~~~~g~l~~l~~-~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVN-LLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHH-HHhcCCHHHHHHHHHHHHHhh
Confidence 235777777 556778888888888887653
No 55
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.14 E-value=0.00099 Score=64.21 Aligned_cols=258 Identities=17% Similarity=0.125 Sum_probs=173.2
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC------
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------ 77 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------ 77 (318)
....++.|.+++.+++. ..+..+++.|.++.. ...++.|..+|.+++ .+..++..|..+.
T Consensus 329 ~~giV~kL~kLl~s~~~--~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r 404 (708)
T PF05804_consen 329 ESGIVEKLLKLLPSENE--DLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEAR 404 (708)
T ss_pred HcCCHHHHHHHhcCCCH--HHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhH
Confidence 45689999999999886 889999999988865 367889999998664 3344555554433
Q ss_pred ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051 78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEK 143 (318)
Q Consensus 78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~ 143 (318)
..+++|.+.+++.. .+++.+...++..+.++. ..+.++.|.+...+..|+-+- ..+.++..
T Consensus 405 ~~f~~TdcIp~L~~~Ll~-~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLl----KlIRNiS~ 479 (708)
T PF05804_consen 405 SMFAYTDCIPQLMQMLLE-NSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLL----KLIRNISQ 479 (708)
T ss_pred HHHhhcchHHHHHHHHHh-CCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHH----HHHHHHHh
Confidence 34689999998773 466666655555555443 224566666666666665432 34444441
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHH
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAII 212 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~ 212 (318)
+ ..+. ...+ ...+..|.+.+..++.+ .....++..|+++.. ...+|.+.
T Consensus 480 h--~~~~-k~~f----------------~~~i~~L~~~v~~~~~e-e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~ 539 (708)
T PF05804_consen 480 H--DGPL-KELF----------------VDFIGDLAKIVSSGDSE-EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLK 539 (708)
T ss_pred c--CchH-HHHH----------------HHHHHHHHHHhhcCCcH-HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHH
Confidence 1 1100 0000 12466677777665543 246677777777742 25677788
Q ss_pred HHhCC--CCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------Ch
Q 021051 213 DSLGA--TSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-----------DD 269 (318)
Q Consensus 213 ~~l~d--~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------~~ 269 (318)
+.|.. ..+.+..+++..+|.+.. ...++.|++++....+|.+.-...+.++.++- ..
T Consensus 540 ~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~ 619 (708)
T PF05804_consen 540 DLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKET 619 (708)
T ss_pred HHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhcc
Confidence 87753 356788888888887642 45688899999877667777777777766642 34
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 270 QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
++...|..++.|.++.||+.|-.+|.-+...
T Consensus 620 ~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 620 EIPAYLIDLMHDKNAEIRKVCDNALDIIAEY 650 (708)
T ss_pred chHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 6788899999999999999999998876443
No 56
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=98.00 E-value=0.00015 Score=66.26 Aligned_cols=229 Identities=17% Similarity=0.134 Sum_probs=148.1
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C----ChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHh
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P----GPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV 88 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 88 (318)
..++..|..+|.++.. ..|+.|++.|..+.. | ...+.+..+.+|.+..+-..|+..|-+.|....++.|...
T Consensus 302 ~~~vs~L~~fL~s~rv--~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~ 379 (898)
T COG5240 302 DQTVSSLRTFLKSTRV--VLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNL 379 (898)
T ss_pred HHHHHHHHHHHhcchH--HHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHH
Confidence 4567778889999987 899999999988754 2 2345566677899999999999999999988887777666
Q ss_pred hhcC-----CCCHHHHHHHHHHHHhcCC---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051 89 LNDF-----SLHPIVRHEAAEALGAIGL---ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF 160 (318)
Q Consensus 89 l~~~-----~~~~~vR~~a~~~L~~~~~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~ 160 (318)
+.+. |.--.+-..|++.|+..=. ...+..|...+.+...-..++.++.++.....+.+..
T Consensus 380 I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s------------ 447 (898)
T COG5240 380 IPSFVHDMSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS------------ 447 (898)
T ss_pred HHHHHHhhccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH------------
Confidence 5521 2223344566666664321 2345666676666777788899999998776211110
Q ss_pred cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC
Q 021051 161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVLGQLQN 235 (318)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 235 (318)
.+.++..|..++.|.+..- .-...+..||+-|.. ..+..+.+-+-=.+.-+|..|+.+|.+++-
T Consensus 448 ----------kEraLe~LC~fIEDcey~~-I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~l 516 (898)
T COG5240 448 ----------KERALEVLCTFIEDCEYHQ-ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFAL 516 (898)
T ss_pred ----------HHHHHHHHHHHHhhcchhH-HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Confidence 1345677777777766541 122233444443321 222333332222466788899999977652
Q ss_pred -------c-chHHHHHHHHhccCCCHHHHHHHHHHHhccCChh
Q 021051 236 -------K-AASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ 270 (318)
Q Consensus 236 -------~-~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~ 270 (318)
+ .+...|...+.|. |.+||..|.-+|..+...+
T Consensus 517 n~~d~~~~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~~~d 557 (898)
T COG5240 517 NISDVVSPQSVENALKRCLNDQ--DDEVRDRASFLLRNMRLSD 557 (898)
T ss_pred CccccccHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhhhhh
Confidence 1 2344555666666 7889999888888887544
No 57
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.00047 Score=64.92 Aligned_cols=258 Identities=12% Similarity=0.116 Sum_probs=142.9
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCCCChHHH----HHHhccCCCHHHHHHHHHHHhccC------CCCcHHHHHHhhh
Q 021051 21 LCDRLVDPTQPISERFRALFSLRNLKGPGPRDA----LIRATKDSSNLLAHEAAFALGQMQ------DAEAIPALEAVLN 90 (318)
Q Consensus 21 L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~ 90 (318)
+..-|.+|+. .+|-..++.|.++..++.++. +...|.+++.+||..|+.+++.+- .+++.+.+..+|.
T Consensus 104 ~RkDLQHPNE--yiRG~TLRFLckLkE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 104 YRKDLQHPNE--YIRGSTLRFLCKLKEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL 181 (948)
T ss_pred HhhhccCchH--hhcchhhhhhhhcCcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH
Confidence 3455788876 999999999999999765544 455678999999999999887653 3467777778887
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhcc--CCCHHHHHHHHHHHHHHHhhhccCcc--------ccccccCCCC
Q 021051 91 DFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVS--DPAQEVRETCELALERIEKLKASGSD--------GSSMTERSPF 160 (318)
Q Consensus 91 ~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~--d~~~~vr~~a~~aL~~~~~~~~~~~~--------~~~~l~~~~~ 160 (318)
. +.||..++.|+-.|-....+.++..|.....+ +-++.+....++-+.... +..+. +-..|..+..
T Consensus 182 ~-e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~---~~~p~~~~~~i~~i~~lL~stss 257 (948)
T KOG1058|consen 182 T-EQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVC---LANPAEKARYIRCIYNLLSSTSS 257 (948)
T ss_pred h-ccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHH---hcCHHHhhHHHHHHHHHHhcCCc
Confidence 4 78999999999888776655544444442221 112333333333333222 00000 0001110000
Q ss_pred cccC-CCCCC----CC----CccHHHHHHHHcCC-CcChHHHHHHHHHHHhCC--C----hhHHHHHHHHhCCCCHHHHH
Q 021051 161 MSVD-PAAPA----SS----CSSVDMLREVLLGE-EKGMYERYAALFALRNHG--G----DEAVSAIIDSLGATSALLKH 224 (318)
Q Consensus 161 ~~~~-~~~~~----~~----~~~~~~L~~~l~~~-~~~~~~r~~a~~~L~~~~--~----~~~~~~l~~~l~d~~~~vr~ 224 (318)
.... .+..+ .+ +.+...++.++.+. +.. ++...+.-|..+. + .+.+-.++..++.++-++|.
T Consensus 258 aV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnn--vklIvldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~ 335 (948)
T KOG1058|consen 258 AVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNN--VKLIVLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRS 335 (948)
T ss_pred hhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcc--hhhhhHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHH
Confidence 0000 01000 01 22344555555322 222 2333344444333 2 23334455677888999999
Q ss_pred HHHHHHhccCCc----chHHHHHHHHhcc-----CCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHH
Q 021051 225 EVAYVLGQLQNK----AASAALSDVLRNV-----NEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIV 286 (318)
Q Consensus 225 ~a~~~L~~~~~~----~~~~~L~~~l~~~-----~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~v 286 (318)
.++...-.+-.. +.+..|..-+.+. .++..-|...++++.... ....++.|.+.+.|.++.-
T Consensus 336 Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 336 KTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAA 412 (948)
T ss_pred HHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHH
Confidence 888777665443 3344444433221 123455776666665543 1346788888877766543
No 58
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=0.00031 Score=66.13 Aligned_cols=247 Identities=19% Similarity=0.172 Sum_probs=161.3
Q ss_pred CCCCHHHHHHHHHHHhccC--------CCC----hHHHHHHhccCCCHHHHHHHHHHHhccCCC-----------CcHHH
Q 021051 28 PTQPISERFRALFSLRNLK--------GPG----PRDALIRATKDSSNLLAHEAAFALGQMQDA-----------EAIPA 84 (318)
Q Consensus 28 ~~~~~~~r~~A~~~l~~~~--------~~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~ 84 (318)
.+++..+|..|.++|...- .+. .+..+.+.-..++..++.+|+.+|.++-.. .....
T Consensus 184 ~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfai 263 (859)
T KOG1241|consen 184 EETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAI 263 (859)
T ss_pred cCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333488988888875531 111 233344455778888999999888775421 12223
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCC-----------------C------------CcHHHHHhhhcc------CCCHH
Q 021051 85 LEAVLNDFSLHPIVRHEAAEALGAIGL-----------------E------------SNIPLLKNSLVS------DPAQE 129 (318)
Q Consensus 85 L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------------~------------~~~~~L~~~l~~------d~~~~ 129 (318)
-+..++ +++..|...+++-=+.+.+ + ...|.|.+.|.+ ++++.
T Consensus 264 tl~amk--s~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWn 341 (859)
T KOG1241|consen 264 TLAAMK--SDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWN 341 (859)
T ss_pred HHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCc
Confidence 334444 5667776666664443221 1 356777775654 23567
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----
Q 021051 130 VRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----- 204 (318)
Q Consensus 130 vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----- 204 (318)
.-++|..+|.-+.. +.++.- -+..++.+.+-++++++.. |.+|+.++|.+-+
T Consensus 342 p~kAAg~CL~l~A~----------~~~D~I-----------v~~Vl~Fiee~i~~pdwr~--reaavmAFGSIl~gp~~~ 398 (859)
T KOG1241|consen 342 PAKAAGVCLMLFAQ----------CVGDDI-----------VPHVLPFIEENIQNPDWRN--REAAVMAFGSILEGPEPD 398 (859)
T ss_pred HHHHHHHHHHHHHH----------Hhcccc-----------hhhhHHHHHHhcCCcchhh--hhHHHHHHHhhhcCCchh
Confidence 77788777776651 111000 0235666777778888886 9999999998732
Q ss_pred ------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 205 ------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 205 ------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
.++++.+++++.|+.-.+|..+.+.||++.+ ...++.+++.+.| .|.+-.++++++-.+
T Consensus 399 ~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D---ePrva~N~CWAf~~L 475 (859)
T KOG1241|consen 399 KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND---EPRVASNVCWAFISL 475 (859)
T ss_pred hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh---CchHHHHHHHHHHHH
Confidence 4788999999999999999999999999864 2345667777766 589999999988776
Q ss_pred CC-------------------hhhHHHHHHhhc--C-CCHHHHHHHHHHHHhchhhhc
Q 021051 267 AD-------------------DQSIGLLKEFAK--D-PEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 267 ~~-------------------~~~~~~L~~~l~--~-~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+ +..+..|++.-+ | .+...|.+|-.||..+-....
T Consensus 476 aea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st 533 (859)
T KOG1241|consen 476 AEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST 533 (859)
T ss_pred HHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence 51 112344444322 2 457789999999999877755
No 59
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.00054 Score=64.76 Aligned_cols=90 Identities=22% Similarity=0.253 Sum_probs=72.2
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHH
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPL 117 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~ 117 (318)
++..+.+-..|++|.+|..|++.+|.++.+.. ...|...++ |.++.+|..+.-...++. +....+.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~~l~--d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~ 164 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLKCLK--DDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDA 164 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHhhcCChhhccccchhHH
Confidence 34444444578899999999999999987655 455666777 899999999999888765 3457888
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 118 LKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 118 L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
|.. +..|++|.|..+|..+|..+.
T Consensus 165 L~~-ll~D~~p~VVAnAlaaL~eI~ 188 (734)
T KOG1061|consen 165 LKD-LLSDSNPMVVANALAALSEIH 188 (734)
T ss_pred HHH-HhcCCCchHHHHHHHHHHHHH
Confidence 888 667999999999999999987
No 60
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.89 E-value=0.00039 Score=63.59 Aligned_cols=256 Identities=14% Similarity=0.073 Sum_probs=161.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCH-HHHHHHHHHHhccCCCCcHHHH------
Q 021051 21 LCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSN-LLAHEAAFALGQMQDAEAIPAL------ 85 (318)
Q Consensus 21 L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~-~vr~~a~~aL~~~~~~~~~~~L------ 85 (318)
.++.|++++| ..-..|...++.+.. |+....+.....+..| .++..++.++|.+........|
T Consensus 99 al~aL~s~ep--r~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~ 176 (858)
T COG5215 99 ALRALKSPEP--RFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNV 176 (858)
T ss_pred HHHHhcCCcc--HHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhH
Confidence 5678999998 777788888777644 4566666666666654 6788888888887753332222
Q ss_pred ------HHhhhcCCCCHHHHHHHHHHHHh--------cCCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051 86 ------EAVLNDFSLHPIVRHEAAEALGA--------IGLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 86 ------~~~l~~~~~~~~vR~~a~~~L~~--------~~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~ 147 (318)
...++ .+++..+|..++.+|.. +..+. ......+ ..+.++.++..++..+|.++.- +..
T Consensus 177 il~aiv~ga~k-~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvce-atq~~d~e~q~aafgCl~kim~-LyY 253 (858)
T COG5215 177 ILFAIVMGALK-NETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCE-ATQGNDEELQHAAFGCLNKIMM-LYY 253 (858)
T ss_pred HHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeeh-hccCCcHHHHHHHHHHHHHHHH-HHH
Confidence 22233 37889999999999865 22222 2333444 5677899999999999998861 100
Q ss_pred CccccccccCCCCcccCCCCCCCCCcc-HHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------------------
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSS-VDMLREVLLGEEKGMYERYAALFALRNHG----------------------- 203 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~L~~~l~~~~~~~~~r~~a~~~L~~~~----------------------- 203 (318)
. .+... . +++ .......+++.++.+ ...+++--..++
T Consensus 254 ~----------fm~~y------m-E~aL~alt~~~mks~nd~v--a~qavEfWsticeEeid~~~e~~~~pe~p~qn~~f 314 (858)
T COG5215 254 K----------FMQSY------M-ENALAALTGRFMKSQNDEV--AIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGF 314 (858)
T ss_pred H----------HHHHH------H-HHHHHHHHHHHhcCcchHH--HHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcch
Confidence 0 00000 0 011 222334445555543 444443321111
Q ss_pred ----ChhHHHHHHHHhC-------CCCHHHHHHHHHHHhc---cCCcc----hHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 204 ----GDEAVSAIIDSLG-------ATSALLKHEVAYVLGQ---LQNKA----ASAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 204 ----~~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~---~~~~~----~~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
..+.+|.|.++|. +++|.+...|..+|-- .+... ++.++.+-+.++ +|.-|.+|+-++|.
T Consensus 315 a~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~i~~pVl~FvEqni~~~--~w~nreaavmAfGS 392 (858)
T COG5215 315 ARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDKIMRPVLGFVEQNIRSE--SWANREAAVMAFGS 392 (858)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhHhHHHHHHHHHHhccCc--hhhhHHHHHHHhhh
Confidence 1256788888773 2467777777666643 33333 344444455554 89999999999999
Q ss_pred cCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 266 IAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 266 ~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+-+ ++++|.+.....|+.-.|+....|+++.|..+-+
T Consensus 393 vm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va 440 (858)
T COG5215 393 VMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVA 440 (858)
T ss_pred hhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHH
Confidence 732 3578888888888889999999999999877655
No 61
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=97.87 E-value=0.0019 Score=62.00 Aligned_cols=208 Identities=16% Similarity=0.092 Sum_probs=137.8
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH-HHHHHHHHHHHHHh
Q 021051 65 LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE-VRETCELALERIEK 143 (318)
Q Consensus 65 vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~-vr~~a~~aL~~~~~ 143 (318)
.-...++.|..+.. ..+..+.+-+. ......|..-+.+|...|.+.++..+.+.+.+..-+. .....+..+....
T Consensus 312 ~f~~lv~~lR~~~~-e~l~~l~~~~~--~~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~- 387 (574)
T smart00638 312 KFLRLVRLLRTLSE-EQLEQLWRQLY--EKKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTA- 387 (574)
T ss_pred HHHHHHHHHHhCCH-HHHHHHHHHHH--hCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh-
Confidence 33444555555554 44555555554 3117889999999999999999999988555443222 2222222222221
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc--ChHHHHHHHHHHHhCCC--------------hhH
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK--GMYERYAALFALRNHGG--------------DEA 207 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~~r~~a~~~L~~~~~--------------~~~ 207 (318)
..| +++.+..+..++.++.. ...+|..++-+++.+-. ...
T Consensus 388 -------------------~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~ 443 (574)
T smart00638 388 -------------------RYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEEL 443 (574)
T ss_pred -------------------hcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHH
Confidence 011 24578888888875432 22357777777775521 244
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHhccCCcchHHHHHHHHh-ccCCCHHHHHHHHHHHhccC---ChhhHHHHHHhh
Q 021051 208 VSAIIDSL----GATSALLKHEVAYVLGQLQNKAASAALSDVLR-NVNEHPMVRHEAAEALGSIA---DDQSIGLLKEFA 279 (318)
Q Consensus 208 ~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~-~~~~~~~vr~~a~~aL~~~~---~~~~~~~L~~~l 279 (318)
++.+.+.+ +..+...+...+.+||+++.+..++.|...+. +.+.+..+|..|++||.++. .....+.|...+
T Consensus 444 ~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~ 523 (574)
T smart00638 444 LKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIY 523 (574)
T ss_pred HHHHHHHHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 55555544 34566678889999999999999999999997 44446789999999999873 445778888876
Q ss_pred cC--CCHHHHHHHHHHHHhchhh
Q 021051 280 KD--PEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 280 ~~--~~~~vr~~a~~aL~~l~~~ 300 (318)
.+ .+++||.+|..+|-...-.
T Consensus 524 ~n~~e~~EvRiaA~~~lm~t~P~ 546 (574)
T smart00638 524 LNRAEPPEVRMAAVLVLMETKPS 546 (574)
T ss_pred cCCCCChHHHHHHHHHHHhcCCC
Confidence 54 6799999999998877533
No 62
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=0.00018 Score=67.57 Aligned_cols=218 Identities=16% Similarity=0.165 Sum_probs=132.0
Q ss_pred HHHhccCCCHHHHHHHHHHHhccCCC----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------CCCcHHHHHhhhc
Q 021051 54 LIRATKDSSNLLAHEAAFALGQMQDA----EAIPALEAVLNDFSLHPIVRHEAAEALGAIG------LESNIPLLKNSLV 123 (318)
Q Consensus 54 L~~~l~d~~~~vr~~a~~aL~~~~~~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------~~~~~~~L~~~l~ 123 (318)
+.+-|.+|+.++|-..++-|.++..+ +.+|.+..+|. +.++.||+.|+-++..+- -+++-+.+...+.
T Consensus 104 ~RkDLQHPNEyiRG~TLRFLckLkE~ELlepl~p~Iracle--HrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~ 181 (948)
T KOG1058|consen 104 YRKDLQHPNEYIRGSTLRFLCKLKEPELLEPLMPSIRACLE--HRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESFLL 181 (948)
T ss_pred HhhhccCchHhhcchhhhhhhhcCcHHHhhhhHHHHHHHHh--CcchhhhhhhheeehhHHhhhhhhcCChHHHHHHHHH
Confidence 33455788999999999999998865 45677788888 999999999999887653 3566677777777
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhC
Q 021051 124 SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNH 202 (318)
Q Consensus 124 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~ 202 (318)
.+.||.-.+.|...|..... +.++..|..-+.+ ++.........++.+.+.
T Consensus 182 ~e~DpsCkRNAFi~L~~~D~----------------------------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv 233 (948)
T KOG1058|consen 182 TEQDPSCKRNAFLMLFTTDP----------------------------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKV 233 (948)
T ss_pred hccCchhHHHHHHHHHhcCH----------------------------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHH
Confidence 88899999999988876540 1112222111110 111111233444444443
Q ss_pred CC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-c----chHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch
Q 021051 203 GG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-K----AASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD 269 (318)
Q Consensus 203 ~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~ 269 (318)
+. ...+..+.++|.++++.|+.+|+..|-.+.. + .+...+++++.+.+ |-+++.=-..-|..+. +.
T Consensus 234 ~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kes-dnnvklIvldrl~~l~~~~~ 312 (948)
T KOG1058|consen 234 CLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKES-DNNVKLIVLDRLSELKALHE 312 (948)
T ss_pred HhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhcc-CcchhhhhHHHHHHHhhhhH
Confidence 22 2456667778888888888888888877654 2 24456666665432 4455544444444443 22
Q ss_pred hhHHH----HHHhhcCCCHHHHHHHHH-HHHhchhhhc
Q 021051 270 QSIGL----LKEFAKDPEPIVSQSCEV-ALSMLEYEQL 302 (318)
Q Consensus 270 ~~~~~----L~~~l~~~~~~vr~~a~~-aL~~l~~~~~ 302 (318)
.+++- +..++..++-+||..+.. ++.....++-
T Consensus 313 ~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNv 350 (948)
T KOG1058|consen 313 KILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNV 350 (948)
T ss_pred HHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccH
Confidence 22222 234566777777755543 4444444433
No 63
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.82 E-value=5.1e-05 Score=48.15 Aligned_cols=45 Identities=33% Similarity=0.395 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 253 PMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 253 ~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
|.||.+|+++||.+.. ++.++.|..+++|+++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4566666666665541 24566677777777777777777777654
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.82 E-value=0.00075 Score=66.71 Aligned_cols=197 Identities=17% Similarity=0.148 Sum_probs=132.5
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG----L----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 152 (318)
.++.+...+.. -.....+..|++.|..+. + ..++|.+.. +..|+.+.||..|+.+|.++-. ...
T Consensus 423 ~vs~lts~IR~-lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~-l~~Ds~a~Vra~Al~Tlt~~L~---~Vr--- 494 (1431)
T KOG1240|consen 423 FVSVLTSCIRA-LKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVH-LLMDSEADVRATALETLTELLA---LVR--- 494 (1431)
T ss_pred eHHHHHHHHHh-hhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHH-HhcCchHHHHHHHHHHHHHHHh---hcc---
Confidence 35666666662 356677888888887654 2 246788888 7799999999999999988751 000
Q ss_pred ccccCCCCcccCCCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------------------------
Q 021051 153 SMTERSPFMSVDPAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------------------------- 204 (318)
Q Consensus 153 ~~l~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------------------------- 204 (318)
...+..+.. .+-.+|.|..++.|.+... +|.+-+..|+.+..
T Consensus 495 ---------~~~~~daniF~eYlfP~L~~l~~d~~~~~-vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~ 564 (1431)
T KOG1240|consen 495 ---------DIPPSDANIFPEYLFPHLNHLLNDSSAQI-VRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAP 564 (1431)
T ss_pred ---------CCCcccchhhHhhhhhhhHhhhccCccce-ehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccccc
Confidence 000000000 1335677777777754443 57766665554421
Q ss_pred ------------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--------CcchHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 205 ------------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--------NKAASAALSDVLRNVNEHPMVRHEAAEALG 264 (318)
Q Consensus 205 ------------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~ 264 (318)
+.....+..++.|+++-||...++.++.+. +.-.+++|..+|+|. ||.+|.+-.+.+.
T Consensus 565 ~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 565 EQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDK--DWRLRGAFFDSIV 642 (1431)
T ss_pred ccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCc--cHHHHHHHHhhcc
Confidence 012233445678888999998888877542 234789999999997 9999999999887
Q ss_pred ccC--------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 265 SIA--------DDQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 265 ~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
.+. +.-.+|+|.+.+.|.++.|-..|+.+|.-+
T Consensus 643 gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~L 683 (1431)
T KOG1240|consen 643 GVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSIL 683 (1431)
T ss_pred ceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHH
Confidence 432 234788888899999998988777777644
No 65
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.79 E-value=0.0007 Score=62.56 Aligned_cols=193 Identities=15% Similarity=0.102 Sum_probs=124.6
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051 85 LEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS 153 (318)
Q Consensus 85 L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~ 153 (318)
|.+.+. +.+|.+-...+.++..+- -.+.+|.|.. .+.+++..|..+.+.-++.++ ..+.+.
T Consensus 651 LyE~lg--e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltP-ILrnkh~Kv~~nti~lvg~I~--~~~pey--- 722 (975)
T COG5181 651 LYENLG--EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTP-ILRNKHQKVVANTIALVGTIC--MNSPEY--- 722 (975)
T ss_pred HHHhcC--cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccH-hhhhhhHHHhhhHHHHHHHHH--hcCccc---
Confidence 334444 556666655555555432 1245666666 446677777777777777776 111110
Q ss_pred cccCCCCcccCCCCCCCCCcc---HHHHHHHHcCCCcChHHHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHH-
Q 021051 154 MTERSPFMSVDPAAPASSCSS---VDMLREVLLGEEKGMYERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHE- 225 (318)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~---~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~- 225 (318)
.+.++. .=.|++.|.+-+.++ |++|...+|.+ |..+.+..|.+.|+..+-..|..
T Consensus 723 ---------------i~~rEWMRIcfeLvd~Lks~nKei--RR~A~~tfG~Is~aiGPqdvL~~LlnnLkvqeRq~Rvct 785 (975)
T COG5181 723 ---------------IGVREWMRICFELVDSLKSWNKEI--RRNATETFGCISRAIGPQDVLDILLNNLKVQERQQRVCT 785 (975)
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHhhHHH--HHhhhhhhhhHHhhcCHHHHHHHHHhcchHHHHHhhhhh
Confidence 000111 124666677777776 99999888876 56778888888887655555543
Q ss_pred --HHHHHhccCCc-chHHHHHHHHhccCCCHHHHHHHHHHHhcc----CCh------hhHHHHHHhhcCCCHHHHHHHHH
Q 021051 226 --VAYVLGQLQNK-AASAALSDVLRNVNEHPMVRHEAAEALGSI----ADD------QSIGLLKEFAKDPEPIVSQSCEV 292 (318)
Q Consensus 226 --a~~~L~~~~~~-~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~----~~~------~~~~~L~~~l~~~~~~vr~~a~~ 292 (318)
|+...++.+.+ .++|.|+.-...+ +..|+...++++..+ |.. ...|.|..++.|.++.-|+.|..
T Consensus 786 svaI~iVae~cgpfsVlP~lm~dY~TP--e~nVQnGvLkam~fmFeyig~~s~dYvy~itPlleDAltDrD~vhRqta~n 863 (975)
T COG5181 786 SVAISIVAEYCGPFSVLPTLMSDYETP--EANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLEDALTDRDPVHRQTAMN 863 (975)
T ss_pred hhhhhhhHhhcCchhhHHHHHhcccCc--hhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH
Confidence 44555565544 6788888877776 678888888887764 321 24677788899999999999999
Q ss_pred HHHhchhhhcch
Q 021051 293 ALSMLEYEQLEK 304 (318)
Q Consensus 293 aL~~l~~~~~~~ 304 (318)
.+..+-.+.++-
T Consensus 864 vI~Hl~Lnc~gt 875 (975)
T COG5181 864 VIRHLVLNCPGT 875 (975)
T ss_pred HHHHHhcCCCCc
Confidence 988887666543
No 66
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.77 E-value=0.008 Score=56.67 Aligned_cols=112 Identities=20% Similarity=0.207 Sum_probs=80.8
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------C
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA------E 80 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~ 80 (318)
+...+++...+++. .||++.+..++.+.+. .....+...+.|..|.||..|+.+|.++... .
T Consensus 86 ~f~hlLRg~Eskdk--~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~~ 163 (892)
T KOG2025|consen 86 TFYHLLRGTESKDK--KVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEECP 163 (892)
T ss_pred HHHHHHhcccCcch--hHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCccc
Confidence 44445666677776 8999999998887651 2344455566788999999999999888732 4
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETC 134 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a 134 (318)
+...+..++.+ |+++.||+.++..+.. ++...|.+.+ -..|-+..+|+.+
T Consensus 164 v~n~l~~liqn-DpS~EVRRaaLsnI~v--dnsTlp~Ive-RarDV~~anRrlv 213 (892)
T KOG2025|consen 164 VVNLLKDLIQN-DPSDEVRRAALSNISV--DNSTLPCIVE-RARDVSGANRRLV 213 (892)
T ss_pred HHHHHHHHHhc-CCcHHHHHHHHHhhcc--CcccchhHHH-HhhhhhHHHHHHH
Confidence 57778888885 8999999998877763 4567788887 3466666666544
No 67
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00068 Score=64.31 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=60.3
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccCCCC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCc----HHHHHhh
Q 021051 52 DALIRATKDSSNLLAHEAAFALGQMQDAE----AIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESN----IPLLKNS 121 (318)
Q Consensus 52 ~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~----~~~L~~~ 121 (318)
..|.+=|++.+-.+.-.|+.+||.+..++ ..|.+.++++ +.++.+|+.|+.++-++- .|+. ++...+
T Consensus 110 NslknDL~s~nq~vVglAL~alg~i~s~EmardlapeVe~Ll~--~~~~~irKKA~Lca~r~irK~P~l~e~f~~~~~~- 186 (866)
T KOG1062|consen 110 NSLKNDLNSSNQYVVGLALCALGNICSPEMARDLAPEVERLLQ--HRDPYIRKKAALCAVRFIRKVPDLVEHFVIAFRK- 186 (866)
T ss_pred HHHHhhccCCCeeehHHHHHHhhccCCHHHhHHhhHHHHHHHh--CCCHHHHHHHHHHHHHHHHcCchHHHHhhHHHHH-
Confidence 33444556778888999999999988654 4566677888 799999999998887653 3443 444555
Q ss_pred hccCCCHHHHHHHHHHHHHHH
Q 021051 122 LVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 122 l~~d~~~~vr~~a~~aL~~~~ 142 (318)
++.+++..|-.++..-+-.+.
T Consensus 187 lL~ek~hGVL~~~l~l~~e~c 207 (866)
T KOG1062|consen 187 LLCEKHHGVLIAGLHLITELC 207 (866)
T ss_pred HHhhcCCceeeeHHHHHHHHH
Confidence 456777666665555544443
No 68
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0007 Score=62.01 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=96.0
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHH--hc--CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccccccc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALG--AI--GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTE 156 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~--~~--~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~ 156 (318)
+-+.+.+++. +.++.+|.+.+.+++ .. ++..++..|.....+|.+..||++|+.+|+-+.
T Consensus 517 add~I~ell~--d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc-------------- 580 (926)
T COG5116 517 ADDYINELLY--DKDSILRYNGVFSLALAYVGTGNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVC-------------- 580 (926)
T ss_pred HHHHHHHHhc--CchHHhhhccHHHHHHHHhcCCcchhHhhhheeecccCchHHHHHHHHheeeeE--------------
Confidence 4456667777 777777776666554 22 344566666664467778888888888877554
Q ss_pred CCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 157 RSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GGDEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
+. +...+...+++|.++... +||....-+||-. |...++..|..+..|+..-||..|+.+++.
T Consensus 581 ---~~---------D~~~lv~tvelLs~shN~-hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~m 647 (926)
T COG5116 581 ---CD---------DRDLLVGTVELLSESHNF-HVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGM 647 (926)
T ss_pred ---ec---------CcchhhHHHHHhhhccch-hhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHH
Confidence 11 123566666666554443 4677777777654 445666677777778888888888777776
Q ss_pred cC---Cc-------chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 233 LQ---NK-------AASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 233 ~~---~~-------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
+- ++ .....+.+.+.+..++..++..|+.+=|-+
T Consensus 648 Il~Q~n~~Lnp~v~~I~k~f~~vI~~Khe~glaklGA~laqGi~ 691 (926)
T COG5116 648 ILMQCNPELNPNVKRIIKKFNRVIVDKHESGLAKLGAVLAQGIS 691 (926)
T ss_pred HHhhcCcccChhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhhhh
Confidence 52 22 233444455555444556666666554443
No 69
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0069 Score=57.64 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=79.3
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCC-CCHHHHHHHHHHHhccCC-----cchHHHH
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGA-TSALLKHEVAYVLGQLQN-----KAASAAL 242 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d-~~~~vr~~a~~~L~~~~~-----~~~~~~L 242 (318)
.+.|-..|++ +..+..+.+.++++-.+- ....+.-|.+.+.| ....+-...+..||+=++ ...+-.+
T Consensus 393 m~FL~~~Lr~-eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~i 471 (865)
T KOG1078|consen 393 MNFLSNMLRE-EGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFI 471 (865)
T ss_pred HHHHHHHHHh-ccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHH
Confidence 4455566655 333334666666665431 12344445555544 345666677777877654 2345555
Q ss_pred HHHHhccCCCHHHHHHHHHHHhccC--C----hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 243 SDVLRNVNEHPMVRHEAAEALGSIA--D----DQSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 243 ~~~l~~~~~~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
...+-=. +..||.+|+.+|.++| + +...-.|.+++.|.+..||..|..+|..+.
T Consensus 472 yNRviLE--n~ivRaaAv~alaKfg~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 472 YNRVILE--NAIVRAAAVSALAKFGAQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred hhhhhhh--hhhhHHHHHHHHHHHhcCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 5555433 7899999999999998 2 235556667999999999999999999887
No 70
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.72 E-value=0.0026 Score=61.56 Aligned_cols=189 Identities=18% Similarity=0.200 Sum_probs=118.9
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccccc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIGL-------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSM 154 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~ 154 (318)
...|..-+.+...+..+|..|.-.||.+|. .+....+++ ..+.+++.|+.+|..|||.+. .+.
T Consensus 819 a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~~~~iie-af~sp~edvksAAs~ALGsl~-----vgn---- 888 (1233)
T KOG1824|consen 819 ATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNELKDTIIE-AFNSPSEDVKSAASYALGSLA-----VGN---- 888 (1233)
T ss_pred HHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhhHHHHHH-HcCCChHHHHHHHHHHhhhhh-----cCc----
Confidence 333444444345677889999999999873 234556777 558999999999999999887 000
Q ss_pred ccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC---hhHHHH----HHHHhCCCCHHHH
Q 021051 155 TERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG---DEAVSA----IIDSLGATSALLK 223 (318)
Q Consensus 155 l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~---~~~~~~----l~~~l~d~~~~vr 223 (318)
-+..+|.+++.+...... ++--+-.|... .. ...++. |.+.........|
T Consensus 889 ----------------l~~yLpfil~qi~sqpk~---QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR 949 (1233)
T KOG1824|consen 889 ----------------LPKYLPFILEQIESQPKR---QYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTR 949 (1233)
T ss_pred ----------------hHhHHHHHHHHHhcchHh---HHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhH
Confidence 134677777777443322 22222222221 11 122222 2332334455667
Q ss_pred HHHHHHHhcc---CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--h--------hhHHHHHHhhcCCCHHHHHHH
Q 021051 224 HEVAYVLGQL---QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--D--------QSIGLLKEFAKDPEPIVSQSC 290 (318)
Q Consensus 224 ~~a~~~L~~~---~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~--------~~~~~L~~~l~~~~~~vr~~a 290 (318)
.-.+.+||++ .++..+|.|...+.++ .+..|..++.++...-. + +.+.-...+++|++..||+.|
T Consensus 950 ~vvAECLGkL~l~epesLlpkL~~~~~S~--a~~~rs~vvsavKfsisd~p~~id~~lk~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 950 NVVAECLGKLVLIEPESLLPKLKLLLRSE--ASNTRSSVVSAVKFSISDQPQPIDPLLKQQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred HHHHHHhhhHHhCChHHHHHHHHHHhcCC--CcchhhhhhheeeeeecCCCCccCHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 7777777775 4557788888888876 78888888877766421 1 233345556788999999999
Q ss_pred HHHHHhchhhh
Q 021051 291 EVALSMLEYEQ 301 (318)
Q Consensus 291 ~~aL~~l~~~~ 301 (318)
..++...-++.
T Consensus 1028 Lvv~nSaahNK 1038 (1233)
T KOG1824|consen 1028 LVVLNSAAHNK 1038 (1233)
T ss_pred HHHHHHHHccC
Confidence 99888765543
No 71
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=97.66 E-value=9.8e-05 Score=46.82 Aligned_cols=44 Identities=32% Similarity=0.354 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 32 ISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQ 75 (318)
Q Consensus 32 ~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 75 (318)
|.+|..|++.|+.+.. ++.++.|...|+|+++.||..|+++||+
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 3566666666665443 2344445555555555555555555554
No 72
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.65 E-value=0.0015 Score=62.89 Aligned_cols=124 Identities=17% Similarity=0.196 Sum_probs=88.0
Q ss_pred ChhhHHHHHHh-hcCCCCCHHHHHHHHHHH-hccCC----CChHHHHHHhccCCCHHHHHHHHHHHhccC---CC---Cc
Q 021051 14 SPEMEKFLCDR-LVDPTQPISERFRALFSL-RNLKG----PGPRDALIRATKDSSNLLAHEAAFALGQMQ---DA---EA 81 (318)
Q Consensus 14 ~~~~~~~L~~~-L~~~~~~~~~r~~A~~~l-~~~~~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~---~~ 81 (318)
....+..+... |.+.+. ..|..|++.+ +.+.. +...+.+++...+.|..++...=.-|-.++ .. .+
T Consensus 16 ~~~~~~~~~sg~l~s~n~--~~kidAmK~iIa~M~~G~dmssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLa 93 (757)
T COG5096 16 NADSVAALSSGRLESSND--YKKIDAMKKIIAQMSLGEDMSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLA 93 (757)
T ss_pred cchHHhhhccccccccCh--HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 44456666666 777775 8888888776 44322 235566666667788888766544444333 22 24
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+..+.+=++ |+++.+|..|++.++.++.+.. ++.+.+ +.+|+++.||+.|+.++..+=
T Consensus 94 vNti~kDl~--d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~-~l~d~~ayVRk~Aalav~kly 155 (757)
T COG5096 94 VNTIQKDLQ--DPNEEIRGFALRTLSLLRVKELLGNIIDPIKK-LLTDPHAYVRKTAALAVAKLY 155 (757)
T ss_pred HHHHHhhcc--CCCHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHH
Confidence 555666666 9999999999999999997664 556777 668999999999999999774
No 73
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.65 E-value=0.00053 Score=67.73 Aligned_cols=209 Identities=17% Similarity=0.121 Sum_probs=135.0
Q ss_pred HHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccCC----------CC----cHHHHHHhhh
Q 021051 33 SERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQD----------AE----AIPALEAVLN 90 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~----~~~~L~~~l~ 90 (318)
..+..|++.|..+.. ..+.|.+..++.|+...||..|+.+|.++-. .- ..|.|..++.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~ 517 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLN 517 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhc
Confidence 567888888777644 4678888888899999999999999876421 11 2455555555
Q ss_pred cCC-CCHHHHHHHHHHHHhcC--------------------CCC------------------cHHHHHhhhccCCCHHHH
Q 021051 91 DFS-LHPIVRHEAAEALGAIG--------------------LES------------------NIPLLKNSLVSDPAQEVR 131 (318)
Q Consensus 91 ~~~-~~~~vR~~a~~~L~~~~--------------------~~~------------------~~~~L~~~l~~d~~~~vr 131 (318)
| ....||..-+..|+.+. ++. .++.....|..|+++-||
T Consensus 518 --d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vk 595 (1431)
T KOG1240|consen 518 --DSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVK 595 (1431)
T ss_pred --cCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 4 55677877666665432 111 123333336678889999
Q ss_pred HHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----
Q 021051 132 ETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G---- 203 (318)
Q Consensus 132 ~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~---- 203 (318)
++....+..+.- ++ .... .+.-.++.|..+|.|.++.. |.+=.+.+.-+ |
T Consensus 596 r~Lle~i~~LC~----------FF-----Gk~k-----sND~iLshLiTfLNDkDw~L--R~aFfdsI~gvsi~VG~rs~ 653 (1431)
T KOG1240|consen 596 RALLESIIPLCV----------FF-----GKEK-----SNDVILSHLITFLNDKDWRL--RGAFFDSIVGVSIFVGWRSV 653 (1431)
T ss_pred HHHHHHHHHHHH----------Hh-----hhcc-----cccchHHHHHHHhcCccHHH--HHHHHhhccceEEEEeeeeH
Confidence 999888877651 00 0000 01235888999998887764 77666666532 2
Q ss_pred ChhHHHHHHHHhCCCCHHHHHHHHHHHhccC------Ccc---hHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQ------NKA---ASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~------~~~---~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
.+..+|.|...|.|..+.|-..|+.+|.-+- .+. .++....++-.+ +..||++++-.+..+.
T Consensus 654 seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hP--N~WIR~~~~~iI~~~~ 724 (1431)
T KOG1240|consen 654 SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHP--NLWIRRAVLGIIAAIA 724 (1431)
T ss_pred HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCc--hHHHHHHHHHHHHHHH
Confidence 2456677788889999999888888776432 222 233344455666 7888988877666653
No 74
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.0036 Score=58.88 Aligned_cols=173 Identities=21% Similarity=0.116 Sum_probs=114.9
Q ss_pred cCCCHHHHHHHHHHHhccCCC----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CC-----CcHHHHHhhh
Q 021051 59 KDSSNLLAHEAAFALGQMQDA----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-LE-----SNIPLLKNSL 122 (318)
Q Consensus 59 ~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~-----~~~~~L~~~l 122 (318)
..++..||...+..|..+.+. .....+..-+. |..|.||..|+.+|+++. ++ .+...+...+
T Consensus 95 Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~--Drep~VRiqAv~aLsrlQ~d~~dee~~v~n~l~~li 172 (892)
T KOG2025|consen 95 ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLK--DREPNVRIQAVLALSRLQGDPKDEECPVVNLLKDLI 172 (892)
T ss_pred cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Confidence 567889999999998776541 12445556666 899999999999999986 22 2456667767
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHH-HHHHHh
Q 021051 123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAA-LFALRN 201 (318)
Q Consensus 123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a-~~~L~~ 201 (318)
.+||+++||+++...+..- ....|-+++..+|-+... |..+ -..|-+
T Consensus 173 qnDpS~EVRRaaLsnI~vd------------------------------nsTlp~IveRarDV~~an--RrlvY~r~lpk 220 (892)
T KOG2025|consen 173 QNDPSDEVRRAALSNISVD------------------------------NSTLPCIVERARDVSGAN--RRLVYERCLPK 220 (892)
T ss_pred hcCCcHHHHHHHHHhhccC------------------------------cccchhHHHHhhhhhHHH--HHHHHHHhhhh
Confidence 7999999999888766522 235666777666665543 4433 233334
Q ss_pred CCC-----hhHHHHHHHHhCCCCHHHHHHHHHHHhc--cCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 202 HGG-----DEAVSAIIDSLGATSALLKHEVAYVLGQ--LQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 202 ~~~-----~~~~~~l~~~l~d~~~~vr~~a~~~L~~--~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
+.- ..-+..+...++|.+..++.++...+.. +.. ..-++.+++.+.-.+ +..|+..++++|-..
T Consensus 221 id~r~lsi~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsn-ss~vavk~lealf~~ 292 (892)
T KOG2025|consen 221 IDLRSLSIDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFSDGNILELLERLDVSN-SSEVAVKALEALFSG 292 (892)
T ss_pred hhhhhhhHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhccccHHHHHHHhcccc-chHHHHHHHHHHHHH
Confidence 411 1233445557788888999888888865 221 233455555554332 568888899988773
No 75
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.62 E-value=0.0012 Score=63.80 Aligned_cols=222 Identities=18% Similarity=0.170 Sum_probs=150.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC-----------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ----------- 77 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----------- 77 (318)
.++.+..+..|.+. .+|...+-....... +...+.++..++|.++.||....+.+....
T Consensus 399 ilp~~~~lv~d~~~--~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~ 476 (759)
T KOG0211|consen 399 ILPEVQVLVLDNAL--HVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV 476 (759)
T ss_pred hhHHHHHHHhcccc--hHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence 45777777887776 777765555444321 356777777889999999999997554321
Q ss_pred CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051 78 DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS 149 (318)
Q Consensus 78 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~ 149 (318)
....+|.+..+.. +..+.+|.+.++.+-... ++...+.+.. ...|....+|.+++..+..+.. .-+.
T Consensus 477 s~slLp~i~el~~--d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~-~l~d~v~~Ir~~aa~~l~~l~~-~~G~- 551 (759)
T KOG0211|consen 477 SNSLLPAIVELAE--DLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRT-WLPDHVYSIREAAARNLPALVE-TFGS- 551 (759)
T ss_pred hhhhhhhhhhhcc--chhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHh-hhhhhHHHHHHHHHHHhHHHHH-HhCc-
Confidence 1244677777777 668999999988775432 2223333333 3456667899999988887761 1110
Q ss_pred cccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC----hhHHHHHHHHhCCCCHH
Q 021051 150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG----DEAVSAIIDSLGATSAL 221 (318)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~----~~~~~~l~~~l~d~~~~ 221 (318)
.. .....++.++....+++.- .|...+.++..+ |. ...++.+..+..|+.++
T Consensus 552 --------------~w----~~~~~i~k~L~~~~q~~y~--~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~van 611 (759)
T KOG0211|consen 552 --------------EW----ARLEEIPKLLAMDLQDNYL--VRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVAN 611 (759)
T ss_pred --------------ch----hHHHhhHHHHHHhcCcccc--hhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchh
Confidence 00 0123466666666666444 488877776544 32 46778888888999999
Q ss_pred HHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 222 LKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 222 vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
||..+++.|-.+.. +...|.+..+..|+ +.++|+.|..+.+.+.
T Consensus 612 VR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~--~~dvr~~a~~a~~~i~ 663 (759)
T KOG0211|consen 612 VRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQ--ELDVRYRAILAFGSIE 663 (759)
T ss_pred hhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCc--ccchhHHHHHHHHHHH
Confidence 99999999988753 45666666666766 8899999999998876
No 76
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=97.60 E-value=0.0042 Score=58.82 Aligned_cols=284 Identities=15% Similarity=0.111 Sum_probs=179.6
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CC----hHHHHHHhccCCCHHHHHHHHHHHhcc---C--
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PG----PRDALIRATKDSSNLLAHEAAFALGQM---Q-- 77 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~---~-- 77 (318)
-+.....++..|+++.+ .+|..|+..++.+.. +. .--.|.+.|...+|.+---.+.++..+ .
T Consensus 797 lpqi~stiL~rLnnksa--~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 797 LPQICSTILWRLNNKSA--KVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred hHHHHHHHHHHhcCCCh--hHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccc
Confidence 45566677888999998 999999998877632 11 223455677788887764444444322 1
Q ss_pred ------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC--CcH---------HHHHhhhccCCCHHHHHHHHHHHHH
Q 021051 78 ------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE--SNI---------PLLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 78 ------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~--~~~---------~~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
..+.+|.|..+|+ +....|...++..++.+++. +.+ -.|.. +++.-+..+|+++..++|-
T Consensus 875 ~km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLle-lLkahkK~iRRaa~nTfG~ 951 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLE-LLKAHKKEIRRAAVNTFGY 951 (1172)
T ss_pred cccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhH
Confidence 2367899999999 78999999999999998742 211 12555 3455688999999999998
Q ss_pred HHhhhccCccccc-cccC--------CCCcccCC---CCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C-
Q 021051 141 IEKLKASGSDGSS-MTER--------SPFMSVDP---AAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G- 203 (318)
Q Consensus 141 ~~~~~~~~~~~~~-~l~~--------~~~~~~~~---~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~- 203 (318)
+.. .-+...+.. .+.+ ....+..- +..-+.-..+|.|..-..-++.. |+...++++..+ |
T Consensus 952 Iak-aIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~n--VQnGVLkalsf~Feyige 1028 (1172)
T KOG0213|consen 952 IAK-AIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEAN--VQNGVLKALSFMFEYIGE 1028 (1172)
T ss_pred HHH-hcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhH--HHHhHHHHHHHHHHHHHH
Confidence 871 111111111 1110 00000000 00011345678888777776665 488777777644 2
Q ss_pred --C---hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-------CcchHHHHHHHHhc--cCCCHHHHHHHHHHHhcc---
Q 021051 204 --G---DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-------NKAASAALSDVLRN--VNEHPMVRHEAAEALGSI--- 266 (318)
Q Consensus 204 --~---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-------~~~~~~~L~~~l~~--~~~~~~vr~~a~~aL~~~--- 266 (318)
. ....|.|..+|-|.|.-.|..|..++..+. ..++.-+|++++-- -...|.|..+..+++-.+
T Consensus 1029 mskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~ 1108 (1172)
T KOG0213|consen 1029 MSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVA 1108 (1172)
T ss_pred HhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHH
Confidence 1 134466777888899989988888887653 34566666666531 012677877666666554
Q ss_pred -CChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchh
Q 021051 267 -ADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKS 305 (318)
Q Consensus 267 -~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~ 305 (318)
|.....+++.+-+--+...||..-...+..+..+.+.-.
T Consensus 1109 Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~dal 1148 (1172)
T KOG0213|consen 1109 LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQDAL 1148 (1172)
T ss_pred hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhcccchh
Confidence 344456666665666788999988888888777665543
No 77
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.0046 Score=56.72 Aligned_cols=123 Identities=22% Similarity=0.222 Sum_probs=91.0
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHH---Hhc------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFA---LGQ------ 75 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~a---L~~------ 75 (318)
...++++...+.|.+. .+|..|+..+.+++. ++..+.+.++..|.+..||..|=-. +..
T Consensus 83 ~~iv~Pv~~cf~D~d~--~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS--QVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HHhhHHHHHhccCccc--eeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccc
Confidence 3467778888999987 999999999988754 4677788888888888887655221 111
Q ss_pred --cCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 76 --MQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 76 --~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.-+..+|.|.+.+. ..+|..|...+..|..+.. +...+.|.. ++.|++++||..+-.+++.+-
T Consensus 161 ~tFsL~~~ipLL~eriy--~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~-~LsD~s~eVr~~~~t~l~~fL 236 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIY--VINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN-MLSDSSDEVRTLTDTLLSEFL 236 (675)
T ss_pred cccCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH-HhcCCcHHHHHHHHHHHHHHH
Confidence 122345677777777 7899999999888876542 456778888 679999999988888777654
No 78
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.0041 Score=63.13 Aligned_cols=262 Identities=16% Similarity=0.131 Sum_probs=161.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHH-Hhc---cCC--------CChHHHHHHhccCCCHHHHHHHHHHHhc---cCCCC
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFS-LRN---LKG--------PGPRDALIRATKDSSNLLAHEAAFALGQ---MQDAE 80 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~-l~~---~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~---~~~~~ 80 (318)
...+.|...+.++++ ..|..++-. |.- +++ ++....+...|.|.|..++.-|.+-+|- +|+..
T Consensus 818 ~~~~~l~~~~~s~np--h~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~Lsd~dEf~QDvAsrGlglVYelgd~~ 895 (1702)
T KOG0915|consen 818 IILKLLDTLLTSPNP--HERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLLSDNDEFSQDVASRGLGLVYELGDSS 895 (1702)
T ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHhcccHHHHHHHHhcCceEEEecCCch
Confidence 355567778888887 888876543 322 221 4566777788899999999999998874 45443
Q ss_pred c----HHHHHHhhhcC---------------------CCC---HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHH
Q 021051 81 A----IPALEAVLNDF---------------------SLH---PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRE 132 (318)
Q Consensus 81 ~----~~~L~~~l~~~---------------------~~~---~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~ 132 (318)
. +..|++-|.-. .++ -..-...+...+.+++|+.+=.+.++..++-.+.-|+
T Consensus 896 ~k~~LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl~qPdLVYKFM~LAnh~A~wnSk~ 975 (1702)
T KOG0915|consen 896 LKKSLVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDLGQPDLVYKFMQLANHNATWNSKK 975 (1702)
T ss_pred hHHHHHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhcCChHHHHHHHHHhhhhchhhccc
Confidence 3 34443333310 111 1233455556667778888888888454556788999
Q ss_pred HHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CC------
Q 021051 133 TCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GG------ 204 (318)
Q Consensus 133 ~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~------ 204 (318)
.|+.+++.+. ..+.......+ ++.+|.|++.-.||+..+ +.|+..+-+. .+
T Consensus 976 GaAfGf~~i~--~~a~~kl~p~l----------------~kLIPrLyRY~yDP~~~V---q~aM~sIW~~Li~D~k~~vd 1034 (1702)
T KOG0915|consen 976 GAAFGFGAIA--KQAGEKLEPYL----------------KKLIPRLYRYQYDPDKKV---QDAMTSIWNALITDSKKVVD 1034 (1702)
T ss_pred chhhchHHHH--HHHHHhhhhHH----------------HHhhHHHhhhccCCcHHH---HHHHHHHHHHhccChHHHHH
Confidence 9999999887 22211111111 346888888888888875 3344333322 22
Q ss_pred ---hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--C---------cchHHHHHHHHhccCCCHHHHHHHH---HHHhccC
Q 021051 205 ---DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--N---------KAASAALSDVLRNVNEHPMVRHEAA---EALGSIA 267 (318)
Q Consensus 205 ---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~~~~~~~~vr~~a~---~aL~~~~ 267 (318)
.+.+..|...+.+..|.||..++-+|..+= . ++....+...+.|- ...||.+|= .+|+++.
T Consensus 1035 ~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~ 1112 (1702)
T KOG0915|consen 1035 EYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI--KESVREAADKAARALSKLC 1112 (1702)
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 244455666667899999999999998752 1 23334444445555 567886554 4444432
Q ss_pred ----C-------hh----hHHHHHH-hhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 268 ----D-------DQ----SIGLLKE-FAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 268 ----~-------~~----~~~~L~~-~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+ .+ ++|+|.. -.-++-+.||+.++..+..+.....
T Consensus 1113 vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1113 VRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred hhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 1 22 4555554 1225679999999999887766533
No 79
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=97.45 E-value=0.0033 Score=60.49 Aligned_cols=123 Identities=21% Similarity=0.250 Sum_probs=81.1
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhC---CCh---hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc----hHHHHH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNH---GGD---EAVSAIIDSLGATSALLKHEVAYVLGQLQNKA----ASAALS 243 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~---~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~----~~~~L~ 243 (318)
..+.+++.....+... +.-.-..+..+ ... -++..+.+=+.|+++.+|..|++.++.++.++ .++.+.
T Consensus 56 Lf~dViK~~~trd~El--KrL~ylYl~~yak~~P~~~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik 133 (757)
T COG5096 56 LFPDVIKNVATRDVEL--KRLLYLYLERYAKLKPELALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIK 133 (757)
T ss_pred HHHHHHHHHHhcCHHH--HHHHHHHHHHHhccCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4666777666544443 33333333332 222 33445555567888888888888888888764 455666
Q ss_pred HHHhccCCCHHHHHHHHHHHhccC--Ch------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 244 DVLRNVNEHPMVRHEAAEALGSIA--DD------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 244 ~~l~~~~~~~~vr~~a~~aL~~~~--~~------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+.+.++ ++.||+.|+.+++++= ++ +.+..+..++.|.+|.|...|..+|..+...
T Consensus 134 ~~l~d~--~ayVRk~Aalav~kly~ld~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 134 KLLTDP--HAYVRKTAALAVAKLYRLDKDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHccCC--cHHHHHHHHHHHHHHHhcCHhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 667776 7888888888888863 21 2455556677788888888888888887666
No 80
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=97.31 E-value=0.0011 Score=64.26 Aligned_cols=122 Identities=20% Similarity=0.184 Sum_probs=89.4
Q ss_pred hhhHHHHHHhhc----CCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCC---CHHHHHHHHHHHhccCC---CCcHHH
Q 021051 15 PEMEKFLCDRLV----DPTQPISERFRALFSLRNLKGPGPRDALIRATKDS---SNLLAHEAAFALGQMQD---AEAIPA 84 (318)
Q Consensus 15 ~~~~~~L~~~L~----~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~---~~~~~~ 84 (318)
+..++.+...|. ..+. ..+..++++||+++.+..++.|..++.+. +..+|..|+++|.++.. ....+.
T Consensus 485 ~~~~~~l~~~l~~~~~~~~~--~~~~~~LkaLgN~g~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~ 562 (618)
T PF01347_consen 485 EKYVPYLEQELKEAVSRGDE--EEKIVYLKALGNLGHPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEKVREI 562 (618)
T ss_dssp GGGTHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHT-GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCH--HHHHHHHHHhhccCCchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHHHHHH
Confidence 344444444444 4443 89999999999999999999999999655 78999999999996542 256788
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCCCHHHHHHHHHHH
Q 021051 85 LEAVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDPAQEVRETCELAL 138 (318)
Q Consensus 85 L~~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~~~~vr~~a~~aL 138 (318)
|.+++.+..+++.+|.+|+..|-.. +....+..+...+..+++..|+......|
T Consensus 563 l~~I~~n~~e~~EvRiaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 563 LLPIFMNTTEDPEVRIAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHH-TTS-HHHHHHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHhcCCCCChhHHHHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 9999997788899999999999887 55566777888777899999987665544
No 81
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=97.30 E-value=0.00027 Score=37.50 Aligned_cols=26 Identities=46% Similarity=0.547 Sum_probs=18.5
Q ss_pred HHHHHHHHHhccCChhhHHHHHHhhc
Q 021051 255 VRHEAAEALGSIADDQSIGLLKEFAK 280 (318)
Q Consensus 255 vr~~a~~aL~~~~~~~~~~~L~~~l~ 280 (318)
||.+|+++||.+|++.+++.|.++++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 57777777777777777777777654
No 82
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.23 E-value=0.011 Score=56.17 Aligned_cols=195 Identities=15% Similarity=0.138 Sum_probs=120.3
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHH-hcc--CC--CChHHHHHHhccCCCHHHHHHHHHHHhccC---CCCcHHHHH
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSL-RNL--KG--PGPRDALIRATKDSSNLLAHEAAFALGQMQ---DAEAIPALE 86 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l-~~~--~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~~~~~L~ 86 (318)
...+..+...|.+..+ ..|..|++-. +.+ |. ...-+.+++.....|-..+...-.-+...+ ...++-.+-
T Consensus 12 k~ei~elks~l~s~~~--~kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~~avn 89 (734)
T KOG1061|consen 12 KGEIPELKSQLNSQSK--EKRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAILAVN 89 (734)
T ss_pred hhhchHHHHHhhhhhh--hhHHHHHHHHHhcCccCcchHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHHhhhh
Confidence 4466777777776665 6666666654 443 21 235566666666666555444433333333 223333333
Q ss_pred Hhhh-cCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051 87 AVLN-DFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161 (318)
Q Consensus 87 ~~l~-~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~ 161 (318)
.+++ ..+++|.+|..|++.++.++.... ...+.+ ..+|.++.+|+.++.+.+.+.. .+.
T Consensus 90 t~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~-~l~d~~~yvRktaa~~vakl~~-~~~-------------- 153 (734)
T KOG1061|consen 90 TFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLK-CLKDDDPYVRKTAAVCVAKLFD-IDP-------------- 153 (734)
T ss_pred hhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHhhc-CCh--------------
Confidence 3333 238999999999999999987664 445666 5589999999999999998761 000
Q ss_pred ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHH
Q 021051 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVL 230 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L 230 (318)
....+...++.|..++.|+++.+ -.+|+.+|..+-. ...+..+++.++.-+.+-+...+..+
T Consensus 154 -----~~~~~~gl~~~L~~ll~D~~p~V--VAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l 226 (734)
T KOG1061|consen 154 -----DLVEDSGLVDALKDLLSDSNPMV--VANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCL 226 (734)
T ss_pred -----hhccccchhHHHHHHhcCCCchH--HHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 00012346788888888777664 6777777776622 23444455555555555666666666
Q ss_pred hccC
Q 021051 231 GQLQ 234 (318)
Q Consensus 231 ~~~~ 234 (318)
....
T Consensus 227 ~~y~ 230 (734)
T KOG1061|consen 227 AEYV 230 (734)
T ss_pred HhcC
Confidence 6654
No 83
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.22 E-value=0.003 Score=58.56 Aligned_cols=193 Identities=17% Similarity=0.167 Sum_probs=126.3
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------CCCcH----HHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------LESNI----PLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~~~~~----~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
..+..++..|. ++.|.+|..|+..++.+. ....+ -.|.+ .+...+|+|-...+.|+..+-+ -+
T Consensus 604 ~ivStiL~~L~--~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE-~lge~ypEvLgsil~Ai~~I~s-v~-- 677 (975)
T COG5181 604 MIVSTILKLLR--SKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYE-NLGEDYPEVLGSILKAICSIYS-VH-- 677 (975)
T ss_pred HHHHHHHHHhc--CCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHH-hcCcccHHHHHHHHHHHHHHhh-hh--
Confidence 45677788888 788889988888776542 11111 22344 2355677777777666665430 00
Q ss_pred ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHH---HHHHHHhCC
Q 021051 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAV---SAIIDSLGA 217 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~---~~l~~~l~d 217 (318)
.+.+..|- -...+|.|.-.|++....+ ..+.+..++.++.. +.+ -.|+..|++
T Consensus 678 ----------~~~~mqpP----i~~ilP~ltPILrnkh~Kv--~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks 741 (975)
T COG5181 678 ----------RFRSMQPP----ISGILPSLTPILRNKHQKV--VANTIALVGTICMNSPEYIGVREWMRICFELVDSLKS 741 (975)
T ss_pred ----------cccccCCc----hhhccccccHhhhhhhHHH--hhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 12222221 1346888888998877764 77778888887542 232 335666778
Q ss_pred CCHHHHHHHHHHHhcc----CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC----ChhhHHHHHHhhcCCCHHHHHH
Q 021051 218 TSALLKHEVAYVLGQL----QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA----DDQSIGLLKEFAKDPEPIVSQS 289 (318)
Q Consensus 218 ~~~~vr~~a~~~L~~~----~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~~~~~vr~~ 289 (318)
-+.++|+.|...+|.+ |+.+++..|++.++.. +...|....-+++..+ .=..+|.|..-...++..|+.-
T Consensus 742 ~nKeiRR~A~~tfG~Is~aiGPqdvL~~LlnnLkvq--eRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnG 819 (975)
T COG5181 742 WNKEIRRNATETFGCISRAIGPQDVLDILLNNLKVQ--ERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNG 819 (975)
T ss_pred hhHHHHHhhhhhhhhHHhhcCHHHHHHHHHhcchHH--HHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHh
Confidence 8999999999999975 4567788888877754 4556655555555443 2247888888778889999999
Q ss_pred HHHHHHh
Q 021051 290 CEVALSM 296 (318)
Q Consensus 290 a~~aL~~ 296 (318)
...|++-
T Consensus 820 vLkam~f 826 (975)
T COG5181 820 VLKAMCF 826 (975)
T ss_pred HHHHHHH
Confidence 8888874
No 84
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=97.22 E-value=0.00051 Score=37.45 Aligned_cols=29 Identities=45% Similarity=0.707 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHhhcC
Q 021051 253 PMVRHEAAEALGSIADDQSIGLLKEFAKD 281 (318)
Q Consensus 253 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 281 (318)
+.||++|+++||+++++.+++.|.++++|
T Consensus 1 ~~vR~~aa~aLg~~~~~~a~~~L~~~l~d 29 (30)
T smart00567 1 PLVRHEAAFALGQLGDEEAVPALIKALED 29 (30)
T ss_pred CHHHHHHHHHHHHcCCHhHHHHHHHHhcC
Confidence 35788888888888888888888887765
No 85
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.21 E-value=0.0015 Score=54.69 Aligned_cols=114 Identities=25% Similarity=0.279 Sum_probs=61.7
Q ss_pred cCCCCCHHHHHHHHHHHhccCC----CC-----------hHHHHHHhccCCCHHHHHHHHHHHhccCC----------CC
Q 021051 26 VDPTQPISERFRALFSLRNLKG----PG-----------PRDALIRATKDSSNLLAHEAAFALGQMQD----------AE 80 (318)
Q Consensus 26 ~~~~~~~~~r~~A~~~l~~~~~----~~-----------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~ 80 (318)
..++.+|..|..|+..+..+-. .. ....+...++|....+...|+..++.+.. ..
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~ 94 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADI 94 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 3344479999999998876521 11 11334444555566667777776655431 13
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----CCc-HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----ESN-IPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----~~~-~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+|.|++.+. +....+|..|..+|..+.. +.. .+.+.. ..+++++.+|..++..+..+-
T Consensus 95 ~l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~-~~~~Kn~~vR~~~~~~l~~~l 159 (228)
T PF12348_consen 95 LLPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKILLEILSQ-GLKSKNPQVREECAEWLAIIL 159 (228)
T ss_dssp HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHHHHHHHH-HTT-S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHH
Confidence 4566666666 6777777777777765431 233 344444 567788888888877777654
No 86
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=96.95 E-value=0.077 Score=49.22 Aligned_cols=279 Identities=16% Similarity=0.128 Sum_probs=166.4
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHH------------hc-cCCCHHHHHHHHHHHhc------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIR------------AT-KDSSNLLAHEAAFALGQ------ 75 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~------------~l-~d~~~~vr~~a~~aL~~------ 75 (318)
+...+.+.+...+..| ...+..++..++.....+.-+.|++ .+ +.++..+|.+++.+|..
T Consensus 132 p~lm~~mv~nvg~eqp-~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~ 210 (858)
T COG5215 132 PGLMEEMVRNVGDEQP-VSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQ 210 (858)
T ss_pred hHHHHHHHHhccccCc-hHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 3445555666666664 5788889999888876433333332 22 35678999999999864
Q ss_pred --cCCCC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 76 --MQDAE----AIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 76 --~~~~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
+.... ......+... .+|..+..+++-+|.++-- +..+-.|.....+.++..|...+++...
T Consensus 211 ~nf~~E~erNy~mqvvceatq--~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWs 288 (858)
T COG5215 211 GNFCYEEERNYFMQVVCEATQ--GNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWS 288 (858)
T ss_pred Hhhcchhhhchhheeeehhcc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHH
Confidence 22222 2333344445 8899999999999987631 2233344444668899999999988886
Q ss_pred HHHhhhccCcc-ccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-------CCcChHHHHHH---HHHHHhCCCh---
Q 021051 140 RIEKLKASGSD-GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-------EEKGMYERYAA---LFALRNHGGD--- 205 (318)
Q Consensus 140 ~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-------~~~~~~~r~~a---~~~L~~~~~~--- 205 (318)
.+.. ..-... ....+...+.....-+. ..-...+|.|+.+|.. +++.. -.+| ++.......+
T Consensus 289 tice-Eeid~~~e~~~~pe~p~qn~~fa~-aav~dvlP~lL~LL~~q~ed~~~DdWn~--smaA~sCLqlfaq~~gd~i~ 364 (858)
T COG5215 289 TICE-EEIDGEMEDKYLPEVPAQNHGFAR-AAVADVLPELLSLLEKQGEDYYGDDWNP--SMAASSCLQLFAQLKGDKIM 364 (858)
T ss_pred HHHH-HHhhhHHHHhhcccCchhhcchHH-HHHHHHHHHHHHHHHhcCCCccccccch--hhhHHHHHHHHHHHhhhHhH
Confidence 6651 111000 00000000000000000 0013467889999864 23332 3333 4444444443
Q ss_pred -hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh----
Q 021051 206 -EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD---- 269 (318)
Q Consensus 206 -~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~---- 269 (318)
..+..+...+.+++|.-|..++-++|.+-+ ++++|.|...+.|+ .-.|+..+++++|.|.+-
T Consensus 365 ~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~va~~ 442 (858)
T COG5215 365 RPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADHVAMI 442 (858)
T ss_pred HHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHHHHHh
Confidence 344445556678899999999999998643 46778888888876 788999999999998742
Q ss_pred ----hhHHHHH-Hhhc--CCCHHHHHHHHHHHHhchhhhc
Q 021051 270 ----QSIGLLK-EFAK--DPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 ----~~~~~L~-~~l~--~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
..++... ..+. .+.|.+...+.|+..++-.+-+
T Consensus 443 i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a 482 (858)
T COG5215 443 ISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIA 482 (858)
T ss_pred cCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhh
Confidence 1122222 2222 2567777888888877755433
No 87
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.86 E-value=0.0049 Score=49.51 Aligned_cols=78 Identities=23% Similarity=0.294 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHhccC--C----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-------CcHHHHHhhhccCCCH
Q 021051 62 SNLLAHEAAFALGQMQ--D----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-------SNIPLLKNSLVSDPAQ 128 (318)
Q Consensus 62 ~~~vr~~a~~aL~~~~--~----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-------~~~~~L~~~l~~d~~~ 128 (318)
+|.+|..++.++|.+. . ....+.+...|. |+++.||..|+..|.++-.. ..+..+.. +..|+++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~--D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~-~l~D~~~ 77 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVEPYLPNLYKCLR--DEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILK-LLVDENP 77 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHH-HHcCCCH
Confidence 4677888888887544 2 245677888888 88889999888888875322 22255566 4489999
Q ss_pred HHHHHHHHHHHHHH
Q 021051 129 EVRETCELALERIE 142 (318)
Q Consensus 129 ~vr~~a~~aL~~~~ 142 (318)
.||..|...+..+.
T Consensus 78 ~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 78 EIRSLARSFFSELL 91 (178)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988876
No 88
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=96.77 E-value=0.12 Score=43.56 Aligned_cols=75 Identities=16% Similarity=0.207 Sum_probs=50.7
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHh----CCCCHHHHHHHHHHHhccCCcchHHHHH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSL----GATSALLKHEVAYVLGQLQNKAASAALS 243 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l----~d~~~~vr~~a~~~L~~~~~~~~~~~L~ 243 (318)
..+.|.+++.+++...++|.+|+.+|..+. .++.+..+..++ +..+..+-...+..+-.+...+..+.+.
T Consensus 112 ~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~ 191 (249)
T PF06685_consen 112 DIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIR 191 (249)
T ss_pred CHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHH
Confidence 477788888888888888998888887652 234444444433 3344445556666777777778888887
Q ss_pred HHHhc
Q 021051 244 DVLRN 248 (318)
Q Consensus 244 ~~l~~ 248 (318)
+...+
T Consensus 192 ~~f~~ 196 (249)
T PF06685_consen 192 KAFED 196 (249)
T ss_pred HHHHc
Confidence 77764
No 89
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.76 E-value=0.0067 Score=48.73 Aligned_cols=76 Identities=18% Similarity=0.233 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC------Ccc-hHHHHHHHHhccCCCHHHHH
Q 021051 191 ERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ------NKA-ASAALSDVLRNVNEHPMVRH 257 (318)
Q Consensus 191 ~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~------~~~-~~~~L~~~l~~~~~~~~vr~ 257 (318)
+|..++.++|.+.. +..++.+...|+|+++.||..|+..|..+- ... ....++..+.|+ ++.||.
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~--~~~Ir~ 81 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDE--NPEIRS 81 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCC--CHHHHH
Confidence 58888888885532 356777888888999999999988888742 222 336666777776 888988
Q ss_pred HHHHHHhccCC
Q 021051 258 EAAEALGSIAD 268 (318)
Q Consensus 258 ~a~~aL~~~~~ 268 (318)
.|...+..+..
T Consensus 82 ~A~~~~~e~~~ 92 (178)
T PF12717_consen 82 LARSFFSELLK 92 (178)
T ss_pred HHHHHHHHHHH
Confidence 88888877753
No 90
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=96.75 E-value=0.12 Score=48.66 Aligned_cols=219 Identities=11% Similarity=0.111 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHhc-----------cCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C-------CCcHHH
Q 021051 60 DSSNLLAHEAAFALGQ-----------MQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----L-------ESNIPL 117 (318)
Q Consensus 60 d~~~~vr~~a~~aL~~-----------~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~-------~~~~~~ 117 (318)
..|...+.+|+..+-. .........|++++. +++..|...++-++.++- + ...++.
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~ 465 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI 465 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence 4466666666655522 345577899999999 999999999999998753 2 356888
Q ss_pred HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHH
Q 021051 118 LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALF 197 (318)
Q Consensus 118 L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~ 197 (318)
+.+ +..++++.+|..+.|.|.++. +-.....+.+.++ +-....+..+..|+++++ ...+.+
T Consensus 466 l~s-~~~~~~~n~r~~~~~~Lr~l~-f~~de~~k~~~~~---------------ki~a~~i~~l~nd~d~~V--qeq~fq 526 (678)
T KOG1293|consen 466 LES-MLTDPDFNSRANSLWVLRHLM-FNCDEEEKFQLLA---------------KIPANLILDLINDPDWAV--QEQCFQ 526 (678)
T ss_pred HHH-HhcCCCchHHHHHHHHHHHHH-hcchHHHHHHHHH---------------HhhHHHHHHHHhCCCHHH--HHHHHH
Confidence 999 778999999999999999987 2111111000000 112445667777888875 889999
Q ss_pred HHHhCCCh--hHHHHHHHHhCCCCHHHHHHHHHHHhcc--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHH
Q 021051 198 ALRNHGGD--EAVSAIIDSLGATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIG 273 (318)
Q Consensus 198 ~L~~~~~~--~~~~~l~~~l~d~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~ 273 (318)
.|+++-.. +.+..+.+-..+- --.....+ ++ +.+-..+.+...+........+...|.+.+-.+---.+--
T Consensus 527 llRNl~c~~~~svdfll~~~~~~----ld~i~l~l-k~a~~~pi~ie~~~~~~~l~~~~d~~~~~am~~~fk~lvl~~e~ 601 (678)
T KOG1293|consen 527 LLRNLTCNSRKSVDFLLEKFKDV----LDKIDLQL-KIAIGSPILIEFLAKKMRLLNPLDTQQKKAMEGIFKILVLLAEV 601 (678)
T ss_pred HHHHhhcCcHHHHHHHHHhhhHH----HHHHHHHH-hhccCCceehhhHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 99988543 6777776654332 11111112 22 2333334433333222113345555555444432111111
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 274 LLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 274 ~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
...+.....+.+.+..+.|-+-.+.+..++.
T Consensus 602 ~~n~~q~s~~~qls~~~~~~iinl~~~~s~s 632 (678)
T KOG1293|consen 602 NENKKQLSIEQQLSLNIMSEIINLTTTDSSS 632 (678)
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCCCCCc
Confidence 2223344566777888888888777776643
No 91
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.74 E-value=0.065 Score=51.32 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=52.7
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHHHHHHHHhCCCCHHHHHHHHHHHhccC--Cc----ch
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAVSAIIDSLGATSALLKHEVAYVLGQLQ--NK----AA 238 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~----~~ 238 (318)
.++..|.+++.|... +..+...|..+|.+ ..+..+.+..-=.+..+|.+|+.+|.+++ ++ ..
T Consensus 429 ~~L~~LCefIEDce~----~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI 504 (865)
T KOG1078|consen 429 RGLEHLCEFIEDCEF----TQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSI 504 (865)
T ss_pred HHHHHHHHHHHhccc----hHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccH
Confidence 356677777766654 33344444443321 22233333222346788999999999887 32 23
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
.-.|...+.|. |.+||-.|--+|..+.
T Consensus 505 ~vllkRc~~D~--DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 505 LVLLKRCLNDS--DDEVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHhcCc--hHHHHHHHHHHHHHhh
Confidence 34445555665 7889988888887775
No 92
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=96.74 E-value=0.0019 Score=34.14 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=14.0
Q ss_pred HHHHHHHHHhccCCcchHHHHHHHHh
Q 021051 222 LKHEVAYVLGQLQNKAASAALSDVLR 247 (318)
Q Consensus 222 vr~~a~~~L~~~~~~~~~~~L~~~l~ 247 (318)
||..|+.+||.++++.+++.|++.++
T Consensus 1 VR~~Aa~aLg~igd~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGDPRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 35555555555555555555555554
No 93
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.72 E-value=0.0088 Score=50.04 Aligned_cols=119 Identities=27% Similarity=0.268 Sum_probs=76.4
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----CCc-H
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----AEA-I 82 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----~~~-~ 82 (318)
..+...+.|... .+-..|+..+..+.. +..++.|++.+.+....++..|..+|..+.. ... .
T Consensus 56 ~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~ 133 (228)
T PF12348_consen 56 DAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILL 133 (228)
T ss_dssp HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHH
T ss_pred HHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHH
Confidence 345556666665 677778887766533 3467777788889999999999888876543 223 4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhc----C-------C----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAI----G-------L----ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~----~-------~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.+..... ++++.+|..++..+..+ + . +...+.+.+ +.+|+++.||..|..++..+.
T Consensus 134 ~~l~~~~~--~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~-~l~D~~~~VR~~Ar~~~~~l~ 205 (228)
T PF12348_consen 134 EILSQGLK--SKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK-LLSDADPEVREAARECLWALY 205 (228)
T ss_dssp HHHHHHTT---S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH-HHTSS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHH
Confidence 55555566 89999999999887653 2 0 124556666 668999999999999998875
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.65 E-value=0.0028 Score=34.73 Aligned_cols=26 Identities=42% Similarity=0.590 Sum_probs=14.1
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
+|.+++.+.|+ +|.||.+|+++|+.+
T Consensus 2 lp~l~~~l~D~--~~~VR~~a~~~l~~i 27 (31)
T PF02985_consen 2 LPILLQLLNDP--SPEVRQAAAECLGAI 27 (31)
T ss_dssp HHHHHHHHT-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence 45555555555 556666666655554
No 95
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.4 Score=41.65 Aligned_cols=262 Identities=15% Similarity=0.191 Sum_probs=140.5
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ 77 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 77 (318)
+.++..+.|...|..++. .++..++..++.+-. .+..+.+.......|..|-.+|+..+.++.
T Consensus 79 lapnlmpdLQrGLiadda--sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 79 LAPNLMPDLQRGLIADDA--SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred hchhhhHHHHhcccCCcc--hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 455666777777777776 788888887766532 234455555667778888888888887765
Q ss_pred C-CCcHHHHH-----------HhhhcCCCCHHHHHHHHHHHHhc-----------CCCCcHHHHHhhhccCCCHHHHHHH
Q 021051 78 D-AEAIPALE-----------AVLNDFSLHPIVRHEAAEALGAI-----------GLESNIPLLKNSLVSDPAQEVRETC 134 (318)
Q Consensus 78 ~-~~~~~~L~-----------~~l~~~~~~~~vR~~a~~~L~~~-----------~~~~~~~~L~~~l~~d~~~~vr~~a 134 (318)
- +.+...+. ++.. ..+..+|...+..+-.+ .....+..|..-+...+|.-|+..+
T Consensus 157 lfpaaleaiFeSellDdlhlrnlaa--kcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianc 234 (524)
T KOG4413|consen 157 LFPAALEAIFESELLDDLHLRNLAA--KCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANC 234 (524)
T ss_pred hcHHHHHHhcccccCChHHHhHHHh--hhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhH
Confidence 3 12222221 1111 12223333333333222 1234455544435555777888888
Q ss_pred HHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh---------
Q 021051 135 ELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD--------- 205 (318)
Q Consensus 135 ~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------- 205 (318)
+.-...+..-.|+.. |. ..+..+..+-..+...+..-+....++...+++=.+
T Consensus 235 iElvteLaeteHgre----------fl--------aQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvsee 296 (524)
T KOG4413|consen 235 IELVTELAETEHGRE----------FL--------AQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEE 296 (524)
T ss_pred HHHHHHHHHHhhhhh----------hc--------chhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHH
Confidence 877776662222221 11 012244455555543333323466566655554221
Q ss_pred hHH-------HHHHHHhCCCCHHHHHHHHHHHhccCCc------------chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 206 EAV-------SAIIDSLGATSALLKHEVAYVLGQLQNK------------AASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 206 ~~~-------~~l~~~l~d~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
... +...+.....|+.....|+.++|.+|.. -....++...-+.+ ...-+..++++|..|
T Consensus 297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqn-ahakqeaaihaLaaI 375 (524)
T KOG4413|consen 297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQN-AHAKQEAAIHALAAI 375 (524)
T ss_pred HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhccc-ccchHHHHHHHHHHh
Confidence 111 1222334566888889999999998752 12233333333332 122334566677666
Q ss_pred CCh-------------------------------hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 267 ADD-------------------------------QSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 267 ~~~-------------------------------~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
... .-...+...++.+.++++.++...+.-+
T Consensus 376 agelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAi 437 (524)
T KOG4413|consen 376 AGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAI 437 (524)
T ss_pred hccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHH
Confidence 410 1134455667778888888887766544
No 96
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.22 Score=49.52 Aligned_cols=226 Identities=15% Similarity=0.107 Sum_probs=130.6
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESN 114 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~ 114 (318)
|+-.|.+.+.|-+ -..|..|+..|+++-+ -...|+++++|+ .+...+|--.+..=++|- ++..
T Consensus 471 PeQLPiVLQVLLS--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQ--S~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 471 PEQLPIVLQVLLS--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQ--SSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred hHhcchHHHHHHH--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhc--cchHhhhhhHHHHHHHHHhcCchh
Confidence 4556666665542 2456677777766432 256799999999 677777755555444432 2333
Q ss_pred HHHHHhh--------hccC---CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc
Q 021051 115 IPLLKNS--------LVSD---PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL 183 (318)
Q Consensus 115 ~~~L~~~--------l~~d---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 183 (318)
...|.+- .+.+ -+++.|..++..|+.+-+ +...+-..++ ..+.+...++.+.
T Consensus 547 Q~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~--nf~lGQ~acl---------------~~~li~iCle~ln 609 (1387)
T KOG1517|consen 547 QADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVR--NFKLGQKACL---------------NGNLIGICLEHLN 609 (1387)
T ss_pred HHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHc--ccchhHHHhc---------------cccHHHHHHHHhc
Confidence 2222220 1111 246889999999988761 1111011111 2346778888887
Q ss_pred CCCcChHHHHHHHHHHHhCC-----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc------chHHHHHHHH
Q 021051 184 GEEKGMYERYAALFALRNHG-----------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNK------AASAALSDVL 246 (318)
Q Consensus 184 ~~~~~~~~r~~a~~~L~~~~-----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~------~~~~~L~~~l 246 (318)
++..+. .|.-.+-+||++= ...+-+.|...+.|+-++||.+|+-+||.+-.. +....+-+.+
T Consensus 610 d~~~pL-LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~ 688 (1387)
T KOG1517|consen 610 DDPEPL-LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEI 688 (1387)
T ss_pred CCccHH-HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhh
Confidence 764443 5888888888761 235678888899999999999999999975321 1112221111
Q ss_pred hccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 247 RNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 247 ~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
.=+ +..++.+ -+.. ...-.+..++++..+-||.+...+|.++..+...+
T Consensus 689 ~l~--~~~~~~E---~~i~----~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~ 737 (1387)
T KOG1517|consen 689 DLD--DERTSIE---DLII----KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSH 737 (1387)
T ss_pred cch--hhhhhHH---HHHH----hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHH
Confidence 100 1111111 0000 11135666778888888888888888876665544
No 97
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.59 E-value=0.0062 Score=43.43 Aligned_cols=51 Identities=24% Similarity=0.303 Sum_probs=27.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHH
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCE 291 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~ 291 (318)
++.++..+.|+ ++.||+.|+++|.++.. .+..+.|.++..|+++.||..|.
T Consensus 29 l~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~ 89 (97)
T PF12755_consen 29 LPPVLKCFDDQ--DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAAE 89 (97)
T ss_pred HHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHH
Confidence 34444444444 45555555555544421 23456666667777777777664
No 98
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.51 E-value=0.0047 Score=33.84 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=18.8
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 115 IPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 115 ~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+|.+.+ +.+|+++.||.+++.+|+.+.
T Consensus 2 lp~l~~-~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQ-LLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHH-HHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 466667 557778888888888777765
No 99
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=0.32 Score=46.34 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=38.2
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC----hHHHHHHhcc--CCCHHHHHHHHHHHhc
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPG----PRDALIRATK--DSSNLLAHEAAFALGQ 75 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~----~~~~L~~~l~--d~~~~vr~~a~~aL~~ 75 (318)
..+..+..-|.+.++ .....|+..++.+|+.+ ..+.+-++|- +..+.||..|+-+|-+
T Consensus 111 lvin~iknDL~srn~--~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS~~~~~~vkqkaALclL~ 174 (938)
T KOG1077|consen 111 LVINSIKNDLSSRNP--TFVCLALHCIANIGSREMAEAFADDIPKLLVSGSSMDYVKQKAALCLLR 174 (938)
T ss_pred HHHHHHHhhhhcCCc--HHHHHHHHHHHhhccHhHHHHhhhhhHHHHhCCcchHHHHHHHHHHHHH
Confidence 344555666777776 78888999999998843 3334446663 4456777777666543
No 100
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.33 Score=45.11 Aligned_cols=210 Identities=19% Similarity=0.162 Sum_probs=133.7
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhc----cC---
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQ----MQ--- 77 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~----~~--- 77 (318)
++.++.|.+.+...++ ..|..-+..+..+.. +...+-|...|+|+++.||...=.++++ +.
T Consensus 166 ~~~ipLL~eriy~~n~--~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P 243 (675)
T KOG0212|consen 166 PEFIPLLRERIYVINP--MTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSP 243 (675)
T ss_pred HHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4567778888888887 889888888877654 4677778888899999999666555543 22
Q ss_pred ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCC-------cHHHHHhhhccCCCH-HHHHHHHHHHHHHH
Q 021051 78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI---GLES-------NIPLLKNSLVSDPAQ-EVRETCELALERIE 142 (318)
Q Consensus 78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~-------~~~~L~~~l~~d~~~-~vr~~a~~aL~~~~ 142 (318)
.++.++.+..-+. ++++.++..|+..+..+ +..+ .+..+..++ .+..+ .++..+...=+.+.
T Consensus 244 ~s~d~~~~i~vlv~~l~--ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~-s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 244 SSMDYDDMINVLVPHLQ--SSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCL-SDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cccCcccchhhcccccc--CCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCC-CCCccccHHHHHHHHHHHHH
Confidence 2356788888888 88999998888877654 3333 333444423 34333 34433332222222
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C------ChhHHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----G------GDEAVSAII 212 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~------~~~~~~~l~ 212 (318)
....++....+ ++-...++-|.+.+.++.... |.++++-+..+ + .+.....+.
T Consensus 321 ~l~s~~~~~~~---------------id~~~ii~vl~~~l~~~~~~t--ri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL 383 (675)
T KOG0212|consen 321 KLVSSERLKEE---------------IDYGSIIEVLTKYLSDDREET--RIAVLNWIILLYHKAPGQLLVHNDSIFLTLL 383 (675)
T ss_pred HHHhhhhhccc---------------cchHHHHHHHHHHhhcchHHH--HHHHHHHHHHHHhhCcchhhhhccHHHHHHH
Confidence 00001100000 111235788888998888776 88888766544 2 246678888
Q ss_pred HHhCCCCHHHHHHHHHHHhccCCc----chHHHHHHHH
Q 021051 213 DSLGATSALLKHEVAYVLGQLQNK----AASAALSDVL 246 (318)
Q Consensus 213 ~~l~d~~~~vr~~a~~~L~~~~~~----~~~~~L~~~l 246 (318)
+.|+|++..|-..++..+..+... ...+++..++
T Consensus 384 ~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~fl~sLL 421 (675)
T KOG0212|consen 384 KTLSDRSDEVVLLALSLLASICSSSNSPNLRKFLLSLL 421 (675)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 999999999999999999988643 3344544444
No 101
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=96.26 E-value=0.12 Score=48.16 Aligned_cols=121 Identities=20% Similarity=0.127 Sum_probs=82.9
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC--------hHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--PG--------PRDALIRATKDSSNLLAHEAAFALGQMQDA------ 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 79 (318)
.+...+++.+.+++. .+|...++.++.+.+ .+ ....|.+.+-|..+.||..|+.+|..+...
T Consensus 91 ~~~~h~lRg~eskdk--~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen 168 (885)
T COG5218 91 GTFYHLLRGTESKDK--KVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN 168 (885)
T ss_pred HHHHHHHhcccCcch--hHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence 355567777888887 899999999887654 11 233444445688999999999999886531
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH-HHHHHHHHHHHHH
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE-VRETCELALERIE 142 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~-vr~~a~~aL~~~~ 142 (318)
.....|...+++ ||+..||+.|+..+.. +....|.+.+.. .|-+.. -|..-.+.|.++|
T Consensus 169 ~~~n~l~~~vqn-DPS~EVRr~allni~v--dnsT~p~IlERa-rDv~~anRr~vY~r~Lp~iG 228 (885)
T COG5218 169 RIVNLLKDIVQN-DPSDEVRRLALLNISV--DNSTYPCILERA-RDVSGANRRMVYERCLPRIG 228 (885)
T ss_pred HHHHHHHHHHhc-CcHHHHHHHHHHHeee--CCCcchhHHHHh-hhhhHHHHHHHHHHHhhhhc
Confidence 235566777774 8999999998876653 446677777744 454443 3445566677776
No 102
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=96.25 E-value=0.011 Score=42.13 Aligned_cols=53 Identities=15% Similarity=0.198 Sum_probs=42.8
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHH
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a 259 (318)
+..++.+.+++.|+++.||..|+++|..+.. ++..+.|.++..|+ ++.||.+|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~--d~~Vr~~a 88 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP--DENVRSAA 88 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--chhHHHHH
Confidence 4677888899999999999999999998642 34567777777887 88898866
No 103
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=96.25 E-value=0.005 Score=33.41 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhccCCCChHHHHHHhcc
Q 021051 33 SERFRALFSLRNLKGPGPRDALIRATK 59 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~~~~~~~L~~~l~ 59 (318)
.+|..|+..|+.++++++++.|.+.++
T Consensus 2 ~vR~~aa~aLg~~~~~~a~~~L~~~l~ 28 (30)
T smart00567 2 LVRHEAAFALGQLGDEEAVPALIKALE 28 (30)
T ss_pred HHHHHHHHHHHHcCCHhHHHHHHHHhc
Confidence 345555555555554445555554444
No 104
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=96.05 E-value=0.095 Score=51.60 Aligned_cols=176 Identities=23% Similarity=0.164 Sum_probs=118.3
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-L---------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
..+.+..-+. +++|.-|..|++.+..+- . ...+-.+.+....|.+-.|-..++..|..+.. .
T Consensus 254 i~~~l~t~~~--s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~-~----- 325 (815)
T KOG1820|consen 254 ITKNLETEML--SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK-K----- 325 (815)
T ss_pred cChHHHHhhh--ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH-h-----
Confidence 3456666667 899999999999886542 1 12233444446688899999999999998871 1
Q ss_pred ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----hhHHHHHHHHhCCCCHHHHHHH
Q 021051 151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----DEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~~~~~~l~~~l~d~~~~vr~~a 226 (318)
+....... .....+.++..+.+..... |-.++.++-.+++ ....+.+..++++.+|.++..+
T Consensus 326 ----lr~~~~~~--------~~~v~p~lld~lkekk~~l--~d~l~~~~d~~~ns~~l~~~~~~I~e~lk~knp~~k~~~ 391 (815)
T KOG1820|consen 326 ----LRPLFRKY--------AKNVFPSLLDRLKEKKSEL--RDALLKALDAILNSTPLSKMSEAILEALKGKNPQIKGEC 391 (815)
T ss_pred ----cchhhHHH--------HHhhcchHHHHhhhccHHH--HHHHHHHHHHHHhcccHHHHHHHHHHHhcCCChhhHHHH
Confidence 11000000 1235677888887776654 7766666655543 4667888889999999999988
Q ss_pred HHHHhc----cCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhc
Q 021051 227 AYVLGQ----LQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAK 280 (318)
Q Consensus 227 ~~~L~~----~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~ 280 (318)
...+.. +++ ....|.++....|. +.+||.+|.++++.+-..-.-+.+.+++.
T Consensus 392 ~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~--~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~ 455 (815)
T KOG1820|consen 392 LLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDT--DKDVRKAALEAVAAVMKVHGEEVFKKLLK 455 (815)
T ss_pred HHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCC--cHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 777764 221 34678888888887 89999999999988753333333334333
No 105
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=95.98 E-value=0.16 Score=47.39 Aligned_cols=175 Identities=18% Similarity=0.101 Sum_probs=106.2
Q ss_pred hccCCCHHHHHHHHHHHhccCCC----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----CC--CcHHHHHh
Q 021051 57 ATKDSSNLLAHEAAFALGQMQDA----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG----LE--SNIPLLKN 120 (318)
Q Consensus 57 ~l~d~~~~vr~~a~~aL~~~~~~----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~~--~~~~~L~~ 120 (318)
.+.+++..||...+..|..+.+- ..+..|.+-+. |..+.||..|+.+|+++. ++ ...-.|..
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~--DRE~~VR~eAv~~L~~~Qe~~~neen~~~n~l~~ 176 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLF--DREKAVRREAVKVLCYYQEMELNEENRIVNLLKD 176 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh--cchHHHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 33677889999999988765431 12344455555 889999999999999875 22 23445666
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH
Q 021051 121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR 200 (318)
Q Consensus 121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~ 200 (318)
.+.+||+.+||+.+..-+..- ....|-+++...|-+... .|..-...|-
T Consensus 177 ~vqnDPS~EVRr~allni~vd------------------------------nsT~p~IlERarDv~~an-Rr~vY~r~Lp 225 (885)
T COG5218 177 IVQNDPSDEVRRLALLNISVD------------------------------NSTYPCILERARDVSGAN-RRMVYERCLP 225 (885)
T ss_pred HHhcCcHHHHHHHHHHHeeeC------------------------------CCcchhHHHHhhhhhHHH-HHHHHHHHhh
Confidence 566899999999876654421 234666777776665543 2334445566
Q ss_pred hCCChhH------HHHHHHHhCCCCHHHHHHHHHHHhc-cCCc--chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 201 NHGGDEA------VSAIIDSLGATSALLKHEVAYVLGQ-LQNK--AASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 201 ~~~~~~~------~~~l~~~l~d~~~~vr~~a~~~L~~-~~~~--~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
++|+... +-.+.-.+.|.+..++.+++.++.. |..+ .-+-.|++.+.-. +..|-..|++++-.-
T Consensus 226 ~iGd~~~lsi~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvS--r~sv~v~aik~~F~~ 298 (885)
T COG5218 226 RIGDLKSLSIDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVS--RRSVLVAAIKGVFEK 298 (885)
T ss_pred hhcchhhccccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhh--hHHHHHHHHHHHHhh
Confidence 6655321 1233346677788888888877764 2222 1222233444333 334666666665554
No 106
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.77 Score=40.33 Aligned_cols=72 Identities=21% Similarity=0.266 Sum_probs=42.8
Q ss_pred cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHH
Q 021051 114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERY 193 (318)
Q Consensus 114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~ 193 (318)
..+.|...+.++.+..+|..|..|+..+- .+.......++ .-.....|...+.+++..+..+.
T Consensus 167 ~L~~Ll~~ls~~~~~~~r~kaL~AissLI--Rn~~~g~~~fl---------------~~~G~~~L~~vl~~~~~~~~lkr 229 (342)
T KOG2160|consen 167 ALSKLLKILSSDDPNTVRTKALFAISSLI--RNNKPGQDEFL---------------KLNGYQVLRDVLQSNNTSVKLKR 229 (342)
T ss_pred cHHHHHHHHccCCCchHHHHHHHHHHHHH--hcCcHHHHHHH---------------hcCCHHHHHHHHHcCCcchHHHH
Confidence 56667776777777788888888777654 11111101110 11246778888888766665566
Q ss_pred HHHHHHHhC
Q 021051 194 AALFALRNH 202 (318)
Q Consensus 194 ~a~~~L~~~ 202 (318)
-++..+..+
T Consensus 230 K~~~Ll~~L 238 (342)
T KOG2160|consen 230 KALFLLSLL 238 (342)
T ss_pred HHHHHHHHH
Confidence 666666554
No 107
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.57 E-value=2 Score=41.30 Aligned_cols=90 Identities=21% Similarity=0.262 Sum_probs=64.8
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh--------hHHHHHHHHhC-CCCHHHHHHHHHHHhccCCc----chHH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGD--------EAVSAIIDSLG-ATSALLKHEVAYVLGQLQNK----AASA 240 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~--------~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~~~----~~~~ 240 (318)
....|-.++.+.+..+ |+-|++.+..+... .-.+.+++.|+ +.|..+|..++..|-.|.|. ..+.
T Consensus 330 ~~~~Lg~fls~rE~Ni--RYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak~IV~ 407 (938)
T KOG1077|consen 330 AVNQLGQFLSHRETNI--RYLALESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAKQIVA 407 (938)
T ss_pred HHHHHHHHhhcccccc--hhhhHHHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhhHHHHHH
Confidence 4567777888888887 99999888877431 12345667776 78899999999999988874 4566
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 241 ALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
.|++.+... ++.+|-..+.-++-+.
T Consensus 408 elLqYL~tA--d~sireeivlKvAILa 432 (938)
T KOG1077|consen 408 ELLQYLETA--DYSIREEIVLKVAILA 432 (938)
T ss_pred HHHHHHhhc--chHHHHHHHHHHHHHH
Confidence 777777776 7777776655554443
No 108
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.48 E-value=0.88 Score=47.21 Aligned_cols=63 Identities=19% Similarity=0.164 Sum_probs=30.3
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccC---C-hhhHHHHHHhhc---CCCHHHHHHHHHHHHhchhhhc
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIA---D-DQSIGLLKEFAK---DPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+..+...++|- ++.+|+.-..|+|.+- . ++++..+...+. .+++..+..++..+..|.....
T Consensus 1278 ll~al~~g~~dR--Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~Ian~s~ 1347 (1702)
T KOG0915|consen 1278 LLRALFPGAKDR--NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISNIANYSQ 1347 (1702)
T ss_pred HHHHHhhccccc--cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHHHHHhhH
Confidence 344555555665 6777776666666552 2 234444443221 1222333444444444554433
No 109
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=95.46 E-value=0.39 Score=41.98 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=59.4
Q ss_pred HhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc----C---------------
Q 021051 56 RATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVRHEAAEALGAI----G--------------- 110 (318)
Q Consensus 56 ~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~----~--------------- 110 (318)
..+.+.++.+|..++++||-.+- ...++.+...+. ..+..+|..|++++..+ |
T Consensus 34 P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~--~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 34 PAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQ--KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 56677788888888888876541 234566677776 45788888888877643 1
Q ss_pred CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 111 LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 111 ~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.......+.+ +..+.++.++..+++++.++-
T Consensus 112 ~~~l~~~l~~-~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 112 SKSLLKILTK-FLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HhHHHHHHHH-HHhcCCHHHHHHHHHHHHHHH
Confidence 1234566777 445669999999999999986
No 110
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.42 E-value=0.057 Score=49.02 Aligned_cols=163 Identities=23% Similarity=0.176 Sum_probs=88.3
Q ss_pred CCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCH
Q 021051 60 DSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQ 128 (318)
Q Consensus 60 d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~ 128 (318)
+++..++.+|+++++-+-- .++...++..+. |+.-.+|..++.++|+|.+ .+.+.-|
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~--d~~ln~r~KaawtlgnITd----------AL~~~~P 469 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLE--DKSLNVRAKAAWSLGNITD----------ALIVNMP 469 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhh--hHhHhHHHHHHHHhhhhHH----------HHHcCCC
Confidence 3456688888888765321 123444555555 6677788888888887653 2234445
Q ss_pred HHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----
Q 021051 129 EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---- 204 (318)
Q Consensus 129 ~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---- 204 (318)
.+|..+.++.+.+- ...+......+-....||..++.+|+++-.
T Consensus 470 s~~s~~eR~sg~ll--------------------------------~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~ 517 (728)
T KOG4535|consen 470 TPDSFQERFSGLLL--------------------------------LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQP 517 (728)
T ss_pred CchHHHHHHHHHHH--------------------------------HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHH
Confidence 55555555444322 001111111111122357777777766521
Q ss_pred ------hhHHHH-HHHHh----CCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHH
Q 021051 205 ------DEAVSA-IIDSL----GATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAE 261 (318)
Q Consensus 205 ------~~~~~~-l~~~l----~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~ 261 (318)
.+.++. +.+++ -.....||+.++.++|++-. +.+.+.|..++.+.. |-.||..|+-
T Consensus 518 i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~-NFKVRi~AA~ 596 (728)
T KOG4535|consen 518 IEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK-NFKVRIRAAA 596 (728)
T ss_pred hhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc-cceEeehhhh
Confidence 011100 11111 12355788888888887532 234577777777643 7788888888
Q ss_pred HHhccC
Q 021051 262 ALGSIA 267 (318)
Q Consensus 262 aL~~~~ 267 (318)
+|..-+
T Consensus 597 aL~vp~ 602 (728)
T KOG4535|consen 597 ALSVPG 602 (728)
T ss_pred hhcCCC
Confidence 887765
No 111
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.38 E-value=0.64 Score=40.84 Aligned_cols=92 Identities=25% Similarity=0.231 Sum_probs=51.9
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhC---C--ChhHHH----HHH-----HHhC-C---------CCHHHHHHHHH
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNH---G--GDEAVS----AII-----DSLG-A---------TSALLKHEVAY 228 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~--~~~~~~----~l~-----~~l~-d---------~~~~vr~~a~~ 228 (318)
...|.|...+.++......|..++.+|+-. + +.+.+. .+. ...+ + +++.+...|+.
T Consensus 129 ~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~ 208 (309)
T PF05004_consen 129 ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALS 208 (309)
T ss_pred HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHH
Confidence 356788888888877666788888777654 2 122222 111 1111 1 12456666655
Q ss_pred HHhccC----C-------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 229 VLGQLQ----N-------KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 229 ~L~~~~----~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
+-+-+- + ...++.|..+|... +.+||.+|.++|+-+
T Consensus 209 aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~--d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 209 AWALLLTTLPDSKLEDLLEEALPALSELLDSD--DVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 544321 1 23556677777665 777777777776654
No 112
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=95.24 E-value=0.28 Score=46.28 Aligned_cols=136 Identities=16% Similarity=0.138 Sum_probs=97.0
Q ss_pred CCCHHHHHHHHHHHHh-----------cCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051 93 SLHPIVRHEAAEALGA-----------IGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~-----------~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~ 161 (318)
..|..++.+|+..+-. ..+.+....|++ +..||+..|...+..++.++- ....+....
T Consensus 388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvq-ll~dp~~~i~~~~lgai~NlV--mefs~~ksk-------- 456 (678)
T KOG1293|consen 388 IKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQ-LLMDPEIMIMGITLGAICNLV--MEFSNLKSK-------- 456 (678)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHH-HhhCcchhHHHHHHHHHHHHH--hhcccHHHH--------
Confidence 6778888777776543 234567888899 668999999999999998876 111111111
Q ss_pred ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC--CChhH----------HHHHHHHhCCCCHHHHHHHHHH
Q 021051 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH--GGDEA----------VSAIIDSLGATSALLKHEVAYV 229 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--~~~~~----------~~~l~~~l~d~~~~vr~~a~~~ 229 (318)
+.....+..+.+.+.+++... |..+++.|..+ +.++. ...|....+|++|.|...+.+.
T Consensus 457 -------fl~~ngId~l~s~~~~~~~n~--r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fql 527 (678)
T KOG1293|consen 457 -------FLRNNGIDILESMLTDPDFNS--RANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQL 527 (678)
T ss_pred -------HHHcCcHHHHHHHhcCCCchH--HHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHH
Confidence 112347899999999998886 99999999886 22211 1234455689999999999999
Q ss_pred HhccCCc--chHHHHHHHHhc
Q 021051 230 LGQLQNK--AASAALSDVLRN 248 (318)
Q Consensus 230 L~~~~~~--~~~~~L~~~l~~ 248 (318)
|..+-.. +.++.|++...+
T Consensus 528 lRNl~c~~~~svdfll~~~~~ 548 (678)
T KOG1293|consen 528 LRNLTCNSRKSVDFLLEKFKD 548 (678)
T ss_pred HHHhhcCcHHHHHHHHHhhhH
Confidence 9998654 778888776544
No 113
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.23 E-value=0.064 Score=53.62 Aligned_cols=128 Identities=20% Similarity=0.197 Sum_probs=90.8
Q ss_pred cHHHHHHhhhcC--CCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051 81 AIPALEAVLNDF--SLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152 (318)
Q Consensus 81 ~~~~L~~~l~~~--~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 152 (318)
..|.+.+...+. ..+|.++.+|--+|+++-- ...+|.|...+.+.|+|.+|.+++.+++.+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDla---------- 989 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA---------- 989 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchh----------
Confidence 345555555431 4578999999999988642 3467888887878999999999999999776
Q ss_pred ccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC------CChhHHHHHHHHhCCCCHHHHHHH
Q 021051 153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH------GGDEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~------~~~~~~~~l~~~l~d~~~~vr~~a 226 (318)
+. .|.. -+...+.|++.|.|.+..+ |..|+..|..+ +.+.-+..+..++.|+++.++.-|
T Consensus 990 -------v~--fpnl---ie~~T~~Ly~rL~D~~~~v--Rkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlA 1055 (1251)
T KOG0414|consen 990 -------VR--FPNL---IEPWTEHLYRRLRDESPSV--RKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLA 1055 (1251)
T ss_pred -------hh--cccc---cchhhHHHHHHhcCccHHH--HHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHH
Confidence 10 1100 0224678999999888875 99999888765 345566777778899998888766
Q ss_pred HHHHhc
Q 021051 227 AYVLGQ 232 (318)
Q Consensus 227 ~~~L~~ 232 (318)
=....+
T Consensus 1056 k~FF~E 1061 (1251)
T KOG0414|consen 1056 KSFFKE 1061 (1251)
T ss_pred HHHHHH
Confidence 633333
No 114
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=95.11 E-value=0.35 Score=44.11 Aligned_cols=257 Identities=18% Similarity=0.102 Sum_probs=139.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHh
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV 88 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 88 (318)
.......+.+...|.-+|..+.+.|..+.. -+..-.+...+.+..|.++..++..+.+++. ....+.
T Consensus 255 ~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~----~lv~~~ 330 (728)
T KOG4535|consen 255 GSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGT----GLIQQY 330 (728)
T ss_pred hhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHH----HHhhhc
Confidence 334455565554445688888887766543 1233334445578888888888888877665 112222
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCC
Q 021051 89 LNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAP 168 (318)
Q Consensus 89 l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (318)
.-. .....+....++++.-.+..... . + ....+....+...++.+++. ..+.. .|
T Consensus 331 ~P~-~~k~~~q~~~fw~~~l~~p~~~~--~---Y-Ds~~~Tl~~s~Cdals~i~~-~~f~~--------------lp--- 385 (728)
T KOG4535|consen 331 KPD-STKAPDQRAPFWTMMLNGPLPRA--L---Y-DSEHPTLQASACDALSSILP-EAFSN--------------LP--- 385 (728)
T ss_pred CCC-cccchhhhccHHHHHccCCChhh--h---h-hhcCCCchhHHHHHHhhcCc-hhhcC--------------CC---
Confidence 221 22235556666666654422111 1 1 12234456666777777661 00000 00
Q ss_pred CCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--
Q 021051 169 ASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-- 235 (318)
Q Consensus 169 ~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-- 235 (318)
. +.+.....+..-.++.....++.+|+.+++-+- ...+...+...+.|+.-..|..+++++|.+.+
T Consensus 386 n-~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL 464 (728)
T KOG4535|consen 386 N-DRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDAL 464 (728)
T ss_pred C-cchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHH
Confidence 0 011122222222333344346777777776552 12455666667778888999999999998864
Q ss_pred ----cc-------hHH-HHHHHH----hccCCCHHHHHHHHHHHhccCC-------h-------hhHHHHHH-hhcCCCH
Q 021051 236 ----KA-------ASA-ALSDVL----RNVNEHPMVRHEAAEALGSIAD-------D-------QSIGLLKE-FAKDPEP 284 (318)
Q Consensus 236 ----~~-------~~~-~L~~~l----~~~~~~~~vr~~a~~aL~~~~~-------~-------~~~~~L~~-~l~~~~~ 284 (318)
|. ... .|...+ ....++..||..++++||++-. + +.+..+.. ..-...-
T Consensus 465 ~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~ 544 (728)
T KOG4535|consen 465 IVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAM 544 (728)
T ss_pred HcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceeccccc
Confidence 11 111 122222 1112367899999999998641 0 11111111 1223457
Q ss_pred HHHHHHHHHHHhchhhhcch
Q 021051 285 IVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 285 ~vr~~a~~aL~~l~~~~~~~ 304 (318)
.||.-++.+++++-.+++-.
T Consensus 545 kV~WNaCya~gNLfkn~a~~ 564 (728)
T KOG4535|consen 545 KVRWNACYAMGNLFKNPALP 564 (728)
T ss_pred ccchHHHHHHHHhhcCcccc
Confidence 89999999999998876643
No 115
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.52 Score=45.98 Aligned_cols=65 Identities=14% Similarity=0.118 Sum_probs=37.1
Q ss_pred hccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHhhhcCCCCHHHHHHHHH---HHHhcCCCCcHHHHHhhhc
Q 021051 57 ATKDSSNLLAHEAAFALGQMQD----------AEAIPALEAVLNDFSLHPIVRHEAAE---ALGAIGLESNIPLLKNSLV 123 (318)
Q Consensus 57 ~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~---~L~~~~~~~~~~~L~~~l~ 123 (318)
.+-|+.+.+|..+++.|..+-. ...+....+.++ |+|+.|-..|++ .|+..-+++.+|.|.+.+.
T Consensus 735 sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~Lk--dedsyvyLnaI~gv~~Lcevy~e~il~dL~e~Y~ 812 (982)
T KOG4653|consen 735 SLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLK--DEDSYVYLNAIRGVVSLCEVYPEDILPDLSEEYL 812 (982)
T ss_pred HhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhc--ccCceeeHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 3345666667666666654321 134555666666 666666666666 4444445556666665443
No 116
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=94.85 E-value=0.35 Score=47.77 Aligned_cols=170 Identities=19% Similarity=0.160 Sum_probs=104.3
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CC---hHHHHHH-hccCCCHHHHHHHHHHHhccCC-
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PG---PRDALIR-ATKDSSNLLAHEAAFALGQMQD- 78 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~---~~~~L~~-~l~d~~~~vr~~a~~aL~~~~~- 78 (318)
.++.+...+.+...+.|++ |..|..|+..+...-. +. ....+++ .+.|.+-.+-..++..|..+..
T Consensus 248 ~di~~ki~~~l~t~~~s~~--WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~ 325 (815)
T KOG1820|consen 248 VDILSKITKNLETEMLSKK--WKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKK 325 (815)
T ss_pred hhhhhhcChHHHHhhhccc--hHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHh
Confidence 3455666677777777775 7999999998866432 11 2222222 3367788888888877765442
Q ss_pred ---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhh
Q 021051 79 ---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----SNIPLLKNSLVSDPAQEVRETCELALERIEKLK 145 (318)
Q Consensus 79 ---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~ 145 (318)
....+.|++.+. +..+.+|..+..++-.++.. ...+.+.. ++++.+|.++..+...+.+.-.+.
T Consensus 326 lr~~~~~~~~~v~p~lld~lk--ekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e-~lk~knp~~k~~~~~~l~r~~~~~ 402 (815)
T KOG1820|consen 326 LRPLFRKYAKNVFPSLLDRLK--EKKSELRDALLKALDAILNSTPLSKMSEAILE-ALKGKNPQIKGECLLLLDRKLRKL 402 (815)
T ss_pred cchhhHHHHHhhcchHHHHhh--hccHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhhc
Confidence 245677778888 77888887777777665542 34555666 567888888888887777654111
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC
Q 021051 146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG 203 (318)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~ 203 (318)
.... . ........++.++....|.+.++ |.+|..+++.+-
T Consensus 403 ~~~~--------------~--~~~t~~~l~p~~~~~~~D~~~~V--R~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 403 GPKT--------------V--EKETVKTLVPHLIKHINDTDKDV--RKAALEAVAAVM 442 (815)
T ss_pred CCcC--------------c--chhhHHHHhHHHhhhccCCcHHH--HHHHHHHHHHHH
Confidence 0000 0 00001234566666666666664 777777666553
No 117
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=94.60 E-value=0.067 Score=31.28 Aligned_cols=28 Identities=32% Similarity=0.420 Sum_probs=21.6
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 270 QSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
++++.|.++++++++.++..|++||+++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677788877777788888888887765
No 118
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=94.43 E-value=1.7 Score=35.73 Aligned_cols=128 Identities=20% Similarity=0.221 Sum_probs=84.5
Q ss_pred HHHHHHcCCCcChHHHHHHHHHHHhCCC---hhHHHHHHHHhCC-CCHHHHHHH-HHHHhccC--CcchHHHHHHHHhcc
Q 021051 177 MLREVLLGEEKGMYERYAALFALRNHGG---DEAVSAIIDSLGA-TSALLKHEV-AYVLGQLQ--NKAASAALSDVLRNV 249 (318)
Q Consensus 177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~~---~~~~~~l~~~l~d-~~~~vr~~a-~~~L~~~~--~~~~~~~L~~~l~~~ 249 (318)
.+..+..++..+ .|..|+..+..... ...++.+...+.+ ++|.+.-.. ...++.+. .+...+.+.+.+.++
T Consensus 55 l~~~L~~~~~~E--~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~s~ 132 (213)
T PF08713_consen 55 LADELWESGYRE--ERYLALLILDKRRKKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAKSD 132 (213)
T ss_dssp HHHHHHCSSCHH--HHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHHCS
T ss_pred HHHHHcCCchHH--HHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHhCC
Confidence 344455555544 48888888876432 2345666666643 467666555 55566652 266788888888877
Q ss_pred CCCHHHHHHHHHHHhccCChh----hHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhc
Q 021051 250 NEHPMVRHEAAEALGSIADDQ----SIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308 (318)
Q Consensus 250 ~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~ 308 (318)
++.+|+.++..+....... .+..+...+.+++..|+.++.++|..+.....+.-.+|
T Consensus 133 --~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~~ 193 (213)
T PF08713_consen 133 --NEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLEF 193 (213)
T ss_dssp --SHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 8999999988877765433 33444455678899999999999999988766553444
No 119
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=3.5 Score=36.08 Aligned_cols=207 Identities=16% Similarity=0.175 Sum_probs=108.7
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCC---------------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-C
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD---------------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-L 111 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~---------------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~ 111 (318)
+...+.|..-|..++..|+..++..+|.+-. ....+.++.++- .+|-.|-.+|++.+.++. .
T Consensus 81 pnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg--geddeVAkAAiesikrialf 158 (524)
T KOG4413|consen 81 PNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG--GEDDEVAKAAIESIKRIALF 158 (524)
T ss_pred hhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc--CCcHHHHHHHHHHHHHHHhc
Confidence 4567777777788888999999888887542 123455666666 788888888988888875 3
Q ss_pred CCcHHHHHhhhccCCCHHHHHHHHHH--HHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcCh
Q 021051 112 ESNIPLLKNSLVSDPAQEVRETCELA--LERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGM 189 (318)
Q Consensus 112 ~~~~~~L~~~l~~d~~~~vr~~a~~a--L~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 189 (318)
+...+.+...=+.| +-..|..++.+ +.+.. -.+-+.+.+.-+. ..+........+..|..-++..++.
T Consensus 159 paaleaiFeSellD-dlhlrnlaakcndiaRvR----VleLIieifSiSp----esaneckkSGLldlLeaElkGteDt- 228 (524)
T KOG4413|consen 159 PAALEAIFESELLD-DLHLRNLAAKCNDIARVR----VLELIIEIFSISP----ESANECKKSGLLDLLEAELKGTEDT- 228 (524)
T ss_pred HHHHHHhcccccCC-hHHHhHHHhhhhhHHHHH----HHHHHHHHHhcCH----HHHhHhhhhhHHHHHHHHhcCCcce-
Confidence 33444433311112 22233222211 11111 0000000000000 0000000122456666666553333
Q ss_pred HHHHHHHHHHHhCC----------ChhHHHHHHHHh--CCCCHHHHHHHHHHHhccCCc---------ch-------HHH
Q 021051 190 YERYAALFALRNHG----------GDEAVSAIIDSL--GATSALLKHEVAYVLGQLQNK---------AA-------SAA 241 (318)
Q Consensus 190 ~~r~~a~~~L~~~~----------~~~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~~---------~~-------~~~ 241 (318)
.|+...+.....+. ....+..+.+.+ .|++|--+..++-..|++-.+ .. ++.
T Consensus 229 LVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidg 308 (524)
T KOG4413|consen 229 LVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDG 308 (524)
T ss_pred eehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHh
Confidence 36877777665542 234455555555 356666666666555554221 11 222
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSIAD 268 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~~~ 268 (318)
-.+.+... ||...-.|+.++|.+|.
T Consensus 309 sfEmiEmn--DpdaieaAiDalGilGS 333 (524)
T KOG4413|consen 309 SFEMIEMN--DPDAIEAAIDALGILGS 333 (524)
T ss_pred hHHhhhcC--CchHHHHHHHHHHhccC
Confidence 23334444 78899999999999984
No 120
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=94.09 E-value=2.4 Score=34.91 Aligned_cols=120 Identities=12% Similarity=0.022 Sum_probs=75.9
Q ss_pred HHcCCCcChHHHHHHHHHHHhC---CChhHHHHHHHHhCC-CCHHHHHH-HHHHHhcc--CCcchHHHHHHHHhccCCCH
Q 021051 181 VLLGEEKGMYERYAALFALRNH---GGDEAVSAIIDSLGA-TSALLKHE-VAYVLGQL--QNKAASAALSDVLRNVNEHP 253 (318)
Q Consensus 181 ~l~~~~~~~~~r~~a~~~L~~~---~~~~~~~~l~~~l~d-~~~~vr~~-a~~~L~~~--~~~~~~~~L~~~l~~~~~~~ 253 (318)
+..++..+ .|..|+..+... .+...++.+...+.+ ++|.+.-. +-..+|.+ ..+...+.+.....++ +.
T Consensus 54 Lw~~~~~E--~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~s~--~~ 129 (208)
T cd07064 54 LWQQPERE--YQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWSTDE--NF 129 (208)
T ss_pred HHcchHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHcCC--cH
Confidence 44444333 388888877654 344556666666654 35555443 33333432 3444557777777776 77
Q ss_pred HHHHHHHHHHhccCC---hh-hHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 254 MVRHEAAEALGSIAD---DQ-SIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 254 ~vr~~a~~aL~~~~~---~~-~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
-+|+.|+.+...... .+ ....+...+.|++..|+.++-|+|..+.......
T Consensus 130 W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~d~~~ 184 (208)
T cd07064 130 WLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYSKTNPDW 184 (208)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccCHHH
Confidence 777777766555432 22 3344555778899999999999999999886644
No 121
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.02 E-value=1.6 Score=38.34 Aligned_cols=90 Identities=30% Similarity=0.250 Sum_probs=57.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCCCHHHHHHHHHHHhcc----C--C-
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDSSNLLAHEAAFALGQM----Q--D- 78 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~--~- 78 (318)
+...+..|.++.. ..|..++..+...-. ....+.+.+.++.....-+..|+++++-+ | .
T Consensus 45 L~~~Id~l~eK~~--~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKSS--STREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 4455666777776 899999998866532 23455666666666555566666665432 2 1
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
....|.|...+.+....+.+|..++.+|+-+
T Consensus 123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~ 158 (309)
T PF05004_consen 123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAIC 158 (309)
T ss_pred HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHH
Confidence 1346777777774444567888888887743
No 122
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.99 E-value=0.11 Score=49.39 Aligned_cols=158 Identities=11% Similarity=0.105 Sum_probs=88.6
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccC--------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCC
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQ--------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LES 113 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~ 113 (318)
.++.|.++++..|..+|..-+.-+-.+. .+...|.+..-+. |.++.+|...+..+..+. +.+
T Consensus 331 i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~--DTn~~Lre~Tlksm~~La~kL~~~~Ln~E 408 (690)
T KOG1243|consen 331 IIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFL--DTNATLREQTLKSMAVLAPKLSKRNLNGE 408 (690)
T ss_pred hhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcc--cCCHHHHHHHHHHHHHHHhhhchhhhcHH
Confidence 6677777777777777766666654432 2345666666666 677777777776665432 122
Q ss_pred cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHH
Q 021051 114 NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERY 193 (318)
Q Consensus 114 ~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~ 193 (318)
....|.. +..|.+..+|.....++++++...+.. .. ..-......+.++|+-.+. |.
T Consensus 409 llr~~ar-~q~d~~~~irtntticlgki~~~l~~~-------------~R-------~~vL~~aftralkdpf~pa--R~ 465 (690)
T KOG1243|consen 409 LLRYLAR-LQPDEHGGIRTNTTICLGKIAPHLAAS-------------VR-------KRVLASAFTRALKDPFVPA--RK 465 (690)
T ss_pred HHHHHHh-hCccccCcccccceeeecccccccchh-------------hh-------ccccchhhhhhhcCCCCCc--hh
Confidence 3444555 444666667776666666665110000 00 0112334445666776665 88
Q ss_pred HHHHHHHhCCCh--------hHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 194 AALFALRNHGGD--------EAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 194 ~a~~~L~~~~~~--------~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
+++..+...+.. ..++.+.-..-|++..+|..|..++..
T Consensus 466 a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~ 512 (690)
T KOG1243|consen 466 AGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQ 512 (690)
T ss_pred hhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHH
Confidence 777777665431 223333334456677777776666643
No 123
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.91 E-value=0.36 Score=34.02 Aligned_cols=73 Identities=14% Similarity=0.087 Sum_probs=36.4
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCC---C------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC---cchHHH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHG---G------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN---KAASAA 241 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~---~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~---~~~~~~ 241 (318)
.....+..+.|+..++ |..++..|+++- + +..+..+...++|+++-|--.|+++|..+.+ ..+++.
T Consensus 4 ~~~~al~~L~dp~~Pv--Ra~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPV--RAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcch--HHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHHH
Confidence 3455566666776665 777766665541 1 1222333344455555555555555444332 234455
Q ss_pred HHHHHhc
Q 021051 242 LSDVLRN 248 (318)
Q Consensus 242 L~~~l~~ 248 (318)
|++...+
T Consensus 82 L~~~y~~ 88 (92)
T PF10363_consen 82 LLDEYAD 88 (92)
T ss_pred HHHHHhC
Confidence 5544443
No 124
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=93.81 E-value=0.43 Score=47.57 Aligned_cols=164 Identities=22% Similarity=0.243 Sum_probs=103.1
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
.-.|.+++.|- +..-|..|+..|+++-+ -.++|..++ |++.+..++|...+...+++-.-+.+.
T Consensus 472 eQLPiVLQVLL----SQvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLK-LLQS~a~ELrpiLVFIWAKILAvD~SC 546 (1387)
T KOG1517|consen 472 EQLPIVLQVLL----SQVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLK-LLQSSARELRPILVFIWAKILAVDPSC 546 (1387)
T ss_pred HhcchHHHHHH----HHHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHH-HhccchHhhhhhHHHHHHHHHhcCchh
Confidence 45677777766 23447788999988643 357899999 778999999999988888876211111
Q ss_pred ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhC
Q 021051 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLG 216 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~ 216 (318)
. .+.+....+. ..+..|.+ ..-+-..|..|+..|..+.+ ...+..=.+.++
T Consensus 547 Q--~dLvKe~g~~---------------YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~ln 609 (1387)
T KOG1517|consen 547 Q--ADLVKENGYK---------------YFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLN 609 (1387)
T ss_pred H--HHHHhccCce---------------eEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhc
Confidence 0 0111110000 00001111 11111236666666665422 233344445667
Q ss_pred CC-CHHHHHHHHHHHhccC-----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 217 AT-SALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 217 d~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
|+ .|.+|.-++.+||++= ...+.+.|...+.|+ .|+||.+|+-|||.+-
T Consensus 610 d~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl 670 (1387)
T KOG1517|consen 610 DDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFL 670 (1387)
T ss_pred CCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHh
Confidence 74 7999999999999852 145778999999987 8999999999999973
No 125
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=93.64 E-value=1.6 Score=36.85 Aligned_cols=78 Identities=22% Similarity=0.298 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhccCCCChHHHHHHhccCCCHH--------HHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHH
Q 021051 32 ISERFRALFSLRNLKGPGPRDALIRATKDSSNL--------LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAA 103 (318)
Q Consensus 32 ~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~--------vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~ 103 (318)
+..-..|+..|+.++..++.+.|+++++-++.. +-....+.+...+. ..++.|.+++.+.+-+..+|.+|+
T Consensus 56 ~~~~~~a~~LLaq~re~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-G~~~~L~~li~~~~~~~yvR~aa~ 134 (249)
T PF06685_consen 56 YNLHFYALYLLAQFREERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-GDIEPLKELIEDPDADEYVRMAAI 134 (249)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-CCHHHHHHHHhCCcHHHHHHHHHH
Confidence 356788999999999999999999999644322 12223333444444 678889999996566789999999
Q ss_pred HHHHhcC
Q 021051 104 EALGAIG 110 (318)
Q Consensus 104 ~~L~~~~ 110 (318)
.+|..+.
T Consensus 135 ~aL~~l~ 141 (249)
T PF06685_consen 135 SALAFLV 141 (249)
T ss_pred HHHHHHH
Confidence 9998653
No 126
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.32 E-value=4.3 Score=37.43 Aligned_cols=89 Identities=24% Similarity=0.227 Sum_probs=49.3
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC-------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD------- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~------- 78 (318)
....+-.-..||+. ..|..|++.|+.... +..++.++..| .+.+..|...++.+|...-.
T Consensus 259 ~~~~la~ka~dp~a--~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l 336 (533)
T KOG2032|consen 259 VLLSLANKATDPSA--KSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL 336 (533)
T ss_pred HHHHHHHhccCchh--HHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence 33334444555554 677777777776543 12444455444 33456677777776654321
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
.+..-.+..++. +.++.+|.+|+..++.+
T Consensus 337 ~~~~l~ialrlR~l~~--se~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 337 ESYLLNIALRLRTLFD--SEDDKMRAAAFVLFGAL 369 (533)
T ss_pred hhhchhHHHHHHHHHH--hcChhhhhhHHHHHHHH
Confidence 123344455555 66667777776666544
No 127
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=0.84 Score=44.24 Aligned_cols=66 Identities=20% Similarity=0.193 Sum_probs=32.6
Q ss_pred CcchHHHHHHHHhccCCCHHHHHHHHHHHhccC-------------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 235 NKAASAALSDVLRNVNEHPMVRHEAAEALGSIA-------------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 235 ~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
.++-+..|+..+... |-.||..+++-+..+= .|..+..|..++.|....||..++.-|..+...+
T Consensus 120 ~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 120 NQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred CchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 344444455555443 4445554444433321 2334555555555555556666665555555444
Q ss_pred c
Q 021051 302 L 302 (318)
Q Consensus 302 ~ 302 (318)
+
T Consensus 198 ~ 198 (970)
T KOG0946|consen 198 S 198 (970)
T ss_pred c
Confidence 4
No 128
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=93.14 E-value=0.16 Score=29.62 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=21.6
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQM 76 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 76 (318)
..++.|+++|.+.++.++..|+|+|+.+
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl 39 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNL 39 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 5677788888888888888888887754
No 129
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=93.14 E-value=0.45 Score=33.53 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=52.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccC---C------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---hhhHHH
Q 021051 207 AVSAIIDSLGATSALLKHEVAYVLGQLQ---N------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---DQSIGL 274 (318)
Q Consensus 207 ~~~~l~~~l~d~~~~vr~~a~~~L~~~~---~------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---~~~~~~ 274 (318)
......+-++|+.+.+|..++..|.++- + +..+..+...++|+ ++-|-.+|+++|..+++ ...++.
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~--DsyVYL~aI~~L~~La~~~p~~vl~~ 81 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDE--DSYVYLNAIKGLAALADRHPDEVLPI 81 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCC--CchHHHHHHHHHHHHHHHChHHHHHH
Confidence 4455666778888899999998888752 1 23456666677776 78888888888888763 347777
Q ss_pred HHHhhcCC
Q 021051 275 LKEFAKDP 282 (318)
Q Consensus 275 L~~~l~~~ 282 (318)
|.+.+.+.
T Consensus 82 L~~~y~~~ 89 (92)
T PF10363_consen 82 LLDEYADP 89 (92)
T ss_pred HHHHHhCc
Confidence 77766553
No 130
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=8.6 Score=36.97 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=70.2
Q ss_pred HHHHHHHh-CCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--Cc--chHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 194 AALFALRN-HGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NK--AASAALSDVLRNVNEHPMVRHEAAEALGSIAD 268 (318)
Q Consensus 194 ~a~~~L~~-~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~--~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~ 268 (318)
.|+-++|. +|.+-++..+.+.+.-.++.+|+..=-++|-+. +| .+++.|.++..|. +.+|-.+++-++|-+|.
T Consensus 627 iAliAMgeeig~eM~lR~f~h~l~yge~~iRravPLal~llsvSNPq~~vlDtLsk~shd~--D~eva~naIfamGLiGA 704 (878)
T KOG2005|consen 627 IALIAMGEEIGSEMVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDG--DLEVAMNAIFAMGLIGA 704 (878)
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCc--chHHHHHHHHHhccccC
Confidence 34444432 455667777777887788999988877777654 44 4678888888887 89999999999999972
Q ss_pred ----hhhHHHHHHh----hcCCCHHHHHHHHHHHHhchhhhc
Q 021051 269 ----DQSIGLLKEF----AKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 269 ----~~~~~~L~~~----l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
......|.++ .+|.+.-.--.....|-.++.+.-
T Consensus 705 GTnNARla~mLrqlaSYyyKd~~~Lf~vriAQGL~hlGKGtl 746 (878)
T KOG2005|consen 705 GTNNARLAQMLRQLASYYYKDSKALFVVRIAQGLVHLGKGTL 746 (878)
T ss_pred CcchHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCce
Confidence 3344555543 344432222235566666666543
No 131
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.05 E-value=6.7 Score=39.67 Aligned_cols=123 Identities=20% Similarity=0.172 Sum_probs=79.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhccCC-CHHHHHHHHHHHhccCCC--------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATKDS-SNLLAHEAAFALGQMQDA-------- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~-------- 79 (318)
..++.|...|.|.+. .+|+.|++.++.+-. .+++..++..++-. ++..-..++-+|++++..
T Consensus 341 ~vie~Lls~l~d~dt--~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l 418 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDT--VVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLL 418 (1133)
T ss_pred HHHHHHHHhccCCcc--hhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHH
Confidence 456667778888887 999999999998755 24555555655422 244555888888876632
Q ss_pred -CcHHHHHHhhhcC------CCCHHHHHHHHHHHHhcC---CCCc-HH-------HHHhhhccCCCHHHHHHHHHHHHH
Q 021051 80 -EAIPALEAVLNDF------SLHPIVRHEAAEALGAIG---LESN-IP-------LLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 80 -~~~~~L~~~l~~~------~~~~~vR~~a~~~L~~~~---~~~~-~~-------~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
..+|.+...+.-+ ..-..||..|...+..+. .+.. .| .|..-..-|++-.+|++|..|+..
T Consensus 419 ~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE 497 (1133)
T KOG1943|consen 419 EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE 497 (1133)
T ss_pred HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence 4566666665511 233578988888776553 2221 12 122223458999999999999864
No 132
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.95 E-value=4.5 Score=37.06 Aligned_cols=124 Identities=19% Similarity=0.173 Sum_probs=72.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG 151 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 151 (318)
...+++.|.+ ..+...|..|++.|..+... -++..+++ ..+|.++.|-..|.....+.. .+
T Consensus 331 L~~l~EvL~d-~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le-aa~ds~~~v~~~Aeed~~~~l---as---- 401 (516)
T KOG2956|consen 331 LLLLLEVLSD-SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE-AAKDSQDEVMRVAEEDCLTTL---AS---- 401 (516)
T ss_pred HHHHHHHHcc-chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH-HHhCCchhHHHHHHHHHHHHH---Hh----
Confidence 3455666661 37888889999998877532 13555666 557888877777777655443 00
Q ss_pred cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCH
Q 021051 152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSA 220 (318)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~ 220 (318)
..| ..-+..+...+...+.+. -..+++.+.++-. ++..|.+++.+.+.+.
T Consensus 402 -----------~~P------~~~I~~i~~~Ilt~D~~~--~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS 462 (516)
T KOG2956|consen 402 -----------HLP------LQCIVNISPLILTADEPR--AVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSS 462 (516)
T ss_pred -----------hCc------hhHHHHHhhHHhcCcchH--HHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchH
Confidence 111 112333444444444442 4444555554422 3556667777777777
Q ss_pred HHHHHHHHHHhcc
Q 021051 221 LLKHEVAYVLGQL 233 (318)
Q Consensus 221 ~vr~~a~~~L~~~ 233 (318)
.||.+++.+|-.|
T Consensus 463 ~VRKtaVfCLVam 475 (516)
T KOG2956|consen 463 TVRKTAVFCLVAM 475 (516)
T ss_pred HhhhhHHHhHHHH
Confidence 7777777777554
No 133
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.79 E-value=3.7 Score=40.45 Aligned_cols=127 Identities=18% Similarity=0.102 Sum_probs=82.2
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHH---HHhccCCC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAF---ALGQMQDA 79 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~---aL~~~~~~ 79 (318)
...+.....+..+.|+.+ -+|..+++.+..+.. ..........|+|.|++|-..+++ .|...-..
T Consensus 724 ~~~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e 801 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE 801 (982)
T ss_pred ccHHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch
Confidence 444556677778888887 689999998876533 356777778889999999999999 66666666
Q ss_pred CcHHHHHHhhhcCCC-C-HHHHHHHHHHHHh----cCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 EAIPALEAVLNDFSL-H-PIVRHEAAEALGA----IGL------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~-~-~~vR~~a~~~L~~----~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..+|.|.+...+... . +..|...-+++.+ .|. ...+..+.. ...||+...|..+...+|.+.
T Consensus 802 ~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~-gvrepd~~~RaSS~a~lg~Lc 875 (982)
T KOG4653|consen 802 DILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLS-GVREPDHEFRASSLANLGQLC 875 (982)
T ss_pred hhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hcCCchHHHHHhHHHHHHHHH
Confidence 777888774442111 1 2222222233333 231 112333444 346888888998888888776
No 134
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.74 E-value=1.6 Score=38.49 Aligned_cols=92 Identities=17% Similarity=0.120 Sum_probs=66.5
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc-CCCHHHHHHHHHHHhccC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK-DSSNLLAHEAAFALGQMQ------ 77 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~------ 77 (318)
.-...+...|++++. .+|..|++++++... ..+...|+..|+ +.+..+|..|+.+++.+=
T Consensus 124 ggl~~ll~~l~~~~~--~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g 201 (342)
T KOG2160|consen 124 GGLVPLLGYLENSDA--ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPG 201 (342)
T ss_pred cCHHHHHHHhcCCcH--HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHH
Confidence 345556668888887 999999999998754 245666777775 456678888888886521
Q ss_pred -----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 78 -----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 78 -----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
.......|.+++.+.+.+..+++.++..++.+
T Consensus 202 ~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~L 238 (342)
T KOG2160|consen 202 QDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLL 238 (342)
T ss_pred HHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 12457888888884447788888888888765
No 135
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.71 E-value=0.75 Score=40.20 Aligned_cols=51 Identities=16% Similarity=0.051 Sum_probs=24.4
Q ss_pred HHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 180 EVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 180 ~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
..+.+++.. +|..++.+||-.+- .+.++.+...+...+..++..|++++-.
T Consensus 34 P~v~~~~~~--vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~D 90 (298)
T PF12719_consen 34 PAVQSSDPA--VRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVKITALKALFD 90 (298)
T ss_pred HHhcCCCHH--HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 333444443 25556655555421 2334444444444455555555555543
No 136
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.50 E-value=1.5 Score=45.66 Aligned_cols=120 Identities=15% Similarity=0.164 Sum_probs=84.9
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCC--------ChhHHHHHHHHhCCCCHHHHHHHHHHHhcc--CCcch----H
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHG--------GDEAVSAIIDSLGATSALLKHEVAYVLGQL--QNKAA----S 239 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~--~~~~~----~ 239 (318)
.+..++..+..+.. .+|..|+++|..+. .++....+..-+.|+...||.+|+..+|++ ..++. .
T Consensus 817 yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qyY 894 (1692)
T KOG1020|consen 817 YLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQYY 894 (1692)
T ss_pred HHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHHH
Confidence 34556666664444 46999999999874 346666777778999999999999999974 44444 4
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCCh-----hhHHHHHHh---hcCCCHHHHHHHHHHHHhc
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIADD-----QSIGLLKEF---AKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----~~~~~L~~~---l~~~~~~vr~~a~~aL~~l 297 (318)
..+.+.+.|+ ...||+.+++.+..+... .....+.++ .+|++..|+.-+...+.++
T Consensus 895 ~~i~erIlDt--gvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 895 DQIIERILDT--GVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHhhcCCC--chhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 5566666666 789999999999998632 233444444 4555665887777777655
No 137
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=92.37 E-value=0.37 Score=36.88 Aligned_cols=106 Identities=25% Similarity=0.186 Sum_probs=60.8
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHH-------HHHHhccC---CCHHHHHHHHHHHhccCCCC
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRD-------ALIRATKD---SSNLLAHEAAFALGQMQDAE 80 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~-------~L~~~l~d---~~~~vr~~a~~aL~~~~~~~ 80 (318)
..++.+.+..|+++|+++.. ..+...+..|...-.|.+.+ .|....+. .+..-+..|+..||.+...-
T Consensus 17 lPL~a~Qt~~lielLk~~~~--~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY 94 (154)
T PF11791_consen 17 LPLNAEQTAELIELLKNPPA--GEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY 94 (154)
T ss_dssp ----HHHHHHHHHHHHS--T--T-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST
T ss_pred CCCCHHHHHHHHHHHhCCCC--ccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC
Confidence 34677889999999999986 56777778887765543321 12222221 23345778888888887777
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHh
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKN 120 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~ 120 (318)
.+..|+++|. ++|..+...|..+|.+.- --+.+..+..
T Consensus 95 NV~~LI~~L~--~~d~~lA~~Aa~aLk~TlLvyDaf~dv~~ 133 (154)
T PF11791_consen 95 NVQPLIDLLK--SDDEELAEEAAEALKNTLLVYDAFNDVAE 133 (154)
T ss_dssp THHHHHHGG----G-TTTHHHHHHHHHT--TTCCHHHHHHH
T ss_pred cHHHHHHHHc--CCcHHHHHHHHHHHHhhHHHHhhHHHHHH
Confidence 7888888887 677777788888887642 2234555555
No 138
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.18 E-value=0.95 Score=46.95 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=88.4
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccC--CCCcH---
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQ--DAEAI--- 82 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~~~--- 82 (318)
.-+..++..|..+.. .+|-+|++.+..+.. +++...+...+.|.+..||.+|+..+|++- .++.+
T Consensus 816 ~yLk~Il~~l~e~~i--alRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy 893 (1692)
T KOG1020|consen 816 PYLKLILSVLGENAI--ALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY 893 (1692)
T ss_pred HHHHHHHHHhcCchH--HHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH
Confidence 356777888887776 999999999988754 567888888999999999999999999753 33444
Q ss_pred -HHHHHhhhcCCCCHHHHHHHHHHHHhcCC--CC---cHHHHHhhh--ccCCCHHHHHHHHHHHHHH
Q 021051 83 -PALEAVLNDFSLHPIVRHEAAEALGAIGL--ES---NIPLLKNSL--VSDPAQEVRETCELALERI 141 (318)
Q Consensus 83 -~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--~~---~~~~L~~~l--~~d~~~~vr~~a~~aL~~~ 141 (318)
+.+.+-+. |+...||..+++.+..+.. |+ ..+...+.+ .+|+...|...+...+-.+
T Consensus 894 Y~~i~erIl--DtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 894 YDQIIERIL--DTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHHHHhhcC--CCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 44444455 7888999999999998863 22 222222211 2565556777777777665
No 139
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.00 E-value=2.9 Score=41.08 Aligned_cols=150 Identities=18% Similarity=0.106 Sum_probs=98.2
Q ss_pred hHHHHHHhhcCC-CCCHHHHHHHHHHHhcc---CC---------CChHHHHHHhccCC-CHHHHHHHHHHHhccC-----
Q 021051 17 MEKFLCDRLVDP-TQPISERFRALFSLRNL---KG---------PGPRDALIRATKDS-SNLLAHEAAFALGQMQ----- 77 (318)
Q Consensus 17 ~~~~L~~~L~~~-~~~~~~r~~A~~~l~~~---~~---------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~----- 77 (318)
-...|+.-|... ++ ..+..|+..|.++ +. +..++.|+.+|+++ +..+...|+++|..+.
T Consensus 168 k~kkLL~gL~~~~De--s~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESDE--SQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhccccCCh--HHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 455666666655 54 7777777776553 22 35788899999876 6889999999997654
Q ss_pred ------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051 78 ------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIEK 143 (318)
Q Consensus 78 ------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~ 143 (318)
+..++|.|.+-|.. -+...|-..++.+|..+.. ...+..... ++.--.-.+++.|+...++...
T Consensus 246 S~a~vV~~~aIPvl~~kL~~-IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~Ls-ylDFFSi~aQR~AlaiaaN~Ck 323 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLT-IEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLS-YLDFFSIHAQRVALAIAANCCK 323 (1051)
T ss_pred hhheeecccchHHHHHhhhh-hhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 23588999887773 5778888888888887753 334444444 3233356677777777777661
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG 188 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 188 (318)
.+....+... .+++|.|..+|...+..
T Consensus 324 ----------si~sd~f~~v--------~ealPlL~~lLs~~D~k 350 (1051)
T KOG0168|consen 324 ----------SIRSDEFHFV--------MEALPLLTPLLSYQDKK 350 (1051)
T ss_pred ----------cCCCccchHH--------HHHHHHHHHHHhhccch
Confidence 1111112222 34688888888765554
No 140
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=91.96 E-value=0.81 Score=46.21 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=90.6
Q ss_pred cHHHHHHHHcC----CCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhC-CCCHHHHHHHHHHHhccCC------c
Q 021051 174 SVDMLREVLLG----EEKGMYERYAALFALRNHGG------DEAVSAIIDSLG-ATSALLKHEVAYVLGQLQN------K 236 (318)
Q Consensus 174 ~~~~L~~~l~~----~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~~------~ 236 (318)
..|.+.+..++ .++. .+.+|.-+|+++-. ...++.+...++ +++|.+|-.++-++|.+.- +
T Consensus 920 f~piv~e~c~n~~~~sdp~--Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie 997 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPE--LQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIE 997 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccc
Confidence 34555565533 3344 48888888888743 456788888775 7899999999999998652 2
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccC------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIA------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
...+.|...+.|. ++.||..|+..|.-+- -.+.+..+..++.|+++.|+.-|..-..++....
T Consensus 998 ~~T~~Ly~rL~D~--~~~vRkta~lvlshLILndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~ 1066 (1251)
T KOG0414|consen 998 PWTEHLYRRLRDE--SPSVRKTALLVLSHLILNDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKG 1066 (1251)
T ss_pred hhhHHHHHHhcCc--cHHHHHHHHHHHHHHHHhhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcc
Confidence 3457788888887 8999999999887652 3456777778889999999999887666665544
No 141
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.86 E-value=1.2 Score=42.79 Aligned_cols=133 Identities=23% Similarity=0.189 Sum_probs=83.7
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccC---CCC------------cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------
Q 021051 52 DALIRATKDSSNLLAHEAAFALGQMQ---DAE------------AIPALEAVLNDFSLHPIVRHEAAEALGAIG------ 110 (318)
Q Consensus 52 ~~L~~~l~d~~~~vr~~a~~aL~~~~---~~~------------~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------ 110 (318)
+.|...|+-++..||..|+..+-..- +++ -...+..+|. |+-|.||..|+..+.++-
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~--d~~p~VRS~a~~gv~k~~s~fWe~ 254 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLE--DPYPMVRSTAILGVCKITSKFWEM 254 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHHHH
Confidence 44445566778888888888776532 222 2455677888 899999999999887643
Q ss_pred -CCCc-HHHH---HhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051 111 -LESN-IPLL---KNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE 185 (318)
Q Consensus 111 -~~~~-~~~L---~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 185 (318)
.+.. .+.| ..-+..|....||.+...+|.-+.. .|...-.-+..+|.|--.+.|+
T Consensus 255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~--------------------np~sh~~le~~Lpal~~~l~D~ 314 (1005)
T KOG1949|consen 255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILD--------------------NPLSHPLLEQLLPALRYSLHDN 314 (1005)
T ss_pred cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHc--------------------CccchhHHHHHHHhcchhhhcc
Confidence 1222 2222 2224467778999999998887651 1111000123456666666666
Q ss_pred CcChHHHHHHHHHHHhCCChhHH
Q 021051 186 EKGMYERYAALFALRNHGGDEAV 208 (318)
Q Consensus 186 ~~~~~~r~~a~~~L~~~~~~~~~ 208 (318)
... ||.++++.|.++++..+.
T Consensus 315 se~--VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 315 SEK--VRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred chh--HHHHHHHHHHHHHhhhhh
Confidence 665 599999999888765433
No 142
>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa
Probab=91.68 E-value=5.9 Score=32.60 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=70.7
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccC---CCChHHHHHHhccCC-CHHHHHHHH-HHHhcc--CCCCcHHHHHHhhhcCC
Q 021051 21 LCDRLVDPTQPISERFRALFSLRNLK---GPGPRDALIRATKDS-SNLLAHEAA-FALGQM--QDAEAIPALEAVLNDFS 93 (318)
Q Consensus 21 L~~~L~~~~~~~~~r~~A~~~l~~~~---~~~~~~~L~~~l~d~-~~~vr~~a~-~aL~~~--~~~~~~~~L~~~l~~~~ 93 (318)
+..+..++.. +.|..|+..+.... ++...+.+..++.+. ++.+--..+ ..+|.+ ..+...+.+.+... +
T Consensus 51 ~~~Lw~~~~~--E~r~~al~~l~~~~~~~~~~~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~~~~~~~~l~~W~~--s 126 (208)
T cd07064 51 VLELWQQPER--EYQYVAIDLLRKYKKFLTPEDLPLLEELITTKSWWDTVDSLAKVVGGILLADYPEFEPVMDEWST--D 126 (208)
T ss_pred HHHHHcchHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCCchHHHHHHHHHHHhHHHHhCChhHHHHHHHHHc--C
Confidence 4446666665 78888887775542 233455566666544 334433333 333332 23233466777777 7
Q ss_pred CCHHHHHHHHHHHHhcC---CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 94 LHPIVRHEAAEALGAIG---LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 94 ~~~~vR~~a~~~L~~~~---~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
++..+|+.|+-+.-... +.+.+-.+...+.+|++..|+++..++|..++
T Consensus 127 ~~~W~rR~ai~~~l~~~~~~~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~ 178 (208)
T cd07064 127 ENFWLRRTAILHQLKYKEKTDTDLLFEIILANLGSKEFFIRKAIGWALREYS 178 (208)
T ss_pred CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHh
Confidence 88888877776554332 22222223444678889999999999999887
No 143
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.25 E-value=2.3 Score=40.24 Aligned_cols=116 Identities=15% Similarity=0.090 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhCC------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHHHH
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNHG------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASAAL 242 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~~L 242 (318)
...++..... ...++.-|...+.++= .++++..+..+..|.+..||..|+..|..++. +...++|
T Consensus 25 y~~il~~~kg---~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kvaDvL 101 (556)
T PF05918_consen 25 YKEILDGVKG---SPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKVADVL 101 (556)
T ss_dssp HHHHHHGGGS----HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHHHHHH
T ss_pred HHHHHHHccC---CHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHHHHHH
Confidence 3444444433 2334777777777652 25788899999999999999999999999864 3567888
Q ss_pred HHHHhccCCCHHHH---HHHHHHHhccCChhhHHHHHHhhc---CCCHHHHHHHHHHHH
Q 021051 243 SDVLRNVNEHPMVR---HEAAEALGSIADDQSIGLLKEFAK---DPEPIVSQSCEVALS 295 (318)
Q Consensus 243 ~~~l~~~~~~~~vr---~~a~~aL~~~~~~~~~~~L~~~l~---~~~~~vr~~a~~aL~ 295 (318)
.++|... ++... ..++..|-.+.....+..|...+. ..++.+|..++.-|.
T Consensus 102 ~QlL~td--d~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 102 VQLLQTD--DPVELDAVKNSLMSLLKQDPKGTLTGLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp HHHTT-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred HHHHhcc--cHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 8888754 55444 344555555555566777776554 467788888887764
No 144
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=91.15 E-value=1.9 Score=40.83 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=66.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCC------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC------hhhHH
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD------DQSIG 273 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~------~~~~~ 273 (318)
+....|+...+ .+...+.-|...+.++-. ..++..++++.+|. +..||..|++.|..+.. +...+
T Consensus 23 ~~y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kvaD 99 (556)
T PF05918_consen 23 EDYKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKVAD 99 (556)
T ss_dssp HHHHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHHHH
T ss_pred HHHHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHHHH
Confidence 44555665555 468888888888887532 46899999999987 89999999999999974 34788
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 274 LLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 274 ~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.|.+++..+++.....+-.+|..+-..
T Consensus 100 vL~QlL~tdd~~E~~~v~~sL~~ll~~ 126 (556)
T PF05918_consen 100 VLVQLLQTDDPVELDAVKNSLMSLLKQ 126 (556)
T ss_dssp HHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhc
Confidence 899999998888888888888655433
No 145
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=91.04 E-value=0.55 Score=44.80 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=37.9
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+|.|+++++ ..|..+|..-+.-+-... +..++|.+.. ...|.++.+|..++.++..+.
T Consensus 331 i~p~l~kLF~--~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~-G~~DTn~~Lre~Tlksm~~La 397 (690)
T KOG1243|consen 331 IIPVLLKLFK--SPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVAL-GFLDTNATLREQTLKSMAVLA 397 (690)
T ss_pred hhhhHHHHhc--CcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHh-hcccCCHHHHHHHHHHHHHHH
Confidence 5667777777 667777766666554432 2345666666 556777777777777776655
No 146
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.95 E-value=11 Score=33.35 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=84.3
Q ss_pred ccHHHHHHHHcCCCcChHHH---HHHHHHHHhCCCh----------hHHHHHHHHh--CCCCHHHHHHHHHHHhccC---
Q 021051 173 SSVDMLREVLLGEEKGMYER---YAALFALRNHGGD----------EAVSAIIDSL--GATSALLKHEVAYVLGQLQ--- 234 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r---~~a~~~L~~~~~~----------~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~--- 234 (318)
..+..|++.+.|.+..- .| ..++..|..+... ...+.|+.++ ..++|.|..+++.++.-+.
T Consensus 283 GGl~tl~~~i~d~n~~~-~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 283 GGLDTLLRCIDDSNEQG-NRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRS 361 (461)
T ss_pred cCHHHHHHHHhhhchhh-HHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcC
Confidence 36888999998855542 34 3456666666332 3345555543 3457888877766665432
Q ss_pred --------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051 235 --------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSM 296 (318)
Q Consensus 235 --------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 296 (318)
+..+....++.++.-+....|++.|++.+.++-. ...++.|+...+..++.++..|..||.-
T Consensus 362 pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRD 441 (461)
T KOG4199|consen 362 PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRD 441 (461)
T ss_pred cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHh
Confidence 1234566777777544467899999999988741 1236667777777888899999999887
Q ss_pred chhhhc
Q 021051 297 LEYEQL 302 (318)
Q Consensus 297 l~~~~~ 302 (318)
++-..-
T Consensus 442 LGc~v~ 447 (461)
T KOG4199|consen 442 LGCDVY 447 (461)
T ss_pred cCcchh
Confidence 765443
No 147
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.95 E-value=2 Score=41.81 Aligned_cols=126 Identities=24% Similarity=0.264 Sum_probs=92.9
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHHHHHHhcc-C-CCHHHHHHHHHHHhcc-------
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRDALIRATK-D-SSNLLAHEAAFALGQM------- 76 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~~L~~~l~-d-~~~~vr~~a~~aL~~~------- 76 (318)
...++++.|++.+.+..- .+.|..|++.|..+.. ...++.|++.|. | .|+.+-..++..+..+
T Consensus 19 s~aETI~kLcDRvessTL-~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~ 97 (970)
T KOG0946|consen 19 SAAETIEKLCDRVESSTL-LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSP 97 (970)
T ss_pred cHHhHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcch
Confidence 456899999999998875 5889999998876543 245667777773 2 3566666666655321
Q ss_pred ---------------------CCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------------CCCcHHHHHhhh
Q 021051 77 ---------------------QDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------------LESNIPLLKNSL 122 (318)
Q Consensus 77 ---------------------~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------------~~~~~~~L~~~l 122 (318)
...+.+..|+..+. +.|-+||..++..+..+- .|..+..|.. +
T Consensus 98 ~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd-l 174 (970)
T KOG0946|consen 98 EVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD-L 174 (970)
T ss_pred hhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH-H
Confidence 12356778888888 899999999999887642 3667788888 6
Q ss_pred ccCCCHHHHHHHHHHHHHHH
Q 021051 123 VSDPAQEVRETCELALERIE 142 (318)
Q Consensus 123 ~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.|....+|..++.-|..+-
T Consensus 175 L~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 175 LRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HhhhhhhhchhHHHHHHHHH
Confidence 68989999998888877664
No 148
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.83 E-value=4.5 Score=39.87 Aligned_cols=160 Identities=21% Similarity=0.164 Sum_probs=100.0
Q ss_pred HHHHHHhcc-CCCHHHHHHHHHHHhcc---C---------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------
Q 021051 51 RDALIRATK-DSSNLLAHEAAFALGQM---Q---------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG------- 110 (318)
Q Consensus 51 ~~~L~~~l~-d~~~~vr~~a~~aL~~~---~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------- 110 (318)
+..|++.|. ..|+..+..++.-|.++ + .+..+|.|+.+|. .+-++.+-..|+++|.++.
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~ 247 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLS-HEHNFDIMLLACRALTYLCEVLPRSS 247 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHh-ccccHHHHHHHHHHHHHHHhhccchh
Confidence 444555554 44888888887776552 2 2357899999999 3456899999999998875
Q ss_pred ----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051 111 ----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE 186 (318)
Q Consensus 111 ----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 186 (318)
+..++|.|.+-|..=.--.|-..+..+|..+. ..|... +|+ ..++...+.++. -
T Consensus 248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS-R~H~~A----iL~---------------AG~l~a~LsylD--F 305 (1051)
T KOG0168|consen 248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS-RRHPKA----ILQ---------------AGALSAVLSYLD--F 305 (1051)
T ss_pred heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH-hhccHH----HHh---------------cccHHHHHHHHH--H
Confidence 34578888876766566677778888888776 222211 111 123444444441 1
Q ss_pred cChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 021051 187 KGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQL 233 (318)
Q Consensus 187 ~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~ 233 (318)
-.+.+++.|+....+.+. .+++|.|..+|...+.......+.++.++
T Consensus 306 FSi~aQR~AlaiaaN~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri 362 (1051)
T KOG0168|consen 306 FSIHAQRVALAIAANCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRI 362 (1051)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 122346666666665542 37888888888766655555555555544
No 149
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.76 E-value=5.8 Score=36.58 Aligned_cols=143 Identities=15% Similarity=0.119 Sum_probs=65.4
Q ss_pred HHHhccCCCCcHHHHHHhhhcC-CCCHHHHHHHHHHHHhcCCCCc----------HHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 71 FALGQMQDAEAIPALEAVLNDF-SLHPIVRHEAAEALGAIGLESN----------IPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 71 ~aL~~~~~~~~~~~L~~~l~~~-~~~~~vR~~a~~~L~~~~~~~~----------~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
+..+..++...-..+.+++... +..+.-|..-+..++.+..+.. +..+.. =..||+..+|..++.+|+
T Consensus 205 r~m~~~~~~~~~~il~q~~ss~ts~~~~~ritd~Af~ael~~~~~l~~~~lL~s~~~~la~-ka~dp~a~~r~~a~r~L~ 283 (533)
T KOG2032|consen 205 RFMACVQDLEMGKILAQLLSSITSEKENGRITDIAFFAELKRPKELDKTGLLGSVLLSLAN-KATDPSAKSRGMACRGLG 283 (533)
T ss_pred HHHHhhCCccHHHHHhhcccccchhcccchHHHHHHHHHHhCcccccccccHHHHHHHHHH-hccCchhHHHHHHHHHHH
Confidence 3344444544444444444421 1223445555555554433222 122222 235677777777777777
Q ss_pred HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----h-------hHH
Q 021051 140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----D-------EAV 208 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~-------~~~ 208 (318)
+... ..+.. ..+. ....+..++..|.|++.. .|...++.+|..+-. . ...
T Consensus 284 ~~as---~~P~k--------v~th-------~~~~ldaii~gL~D~~~~-~V~leam~~Lt~v~~~~~~~~l~~~~l~ia 344 (533)
T KOG2032|consen 284 NTAS---GAPDK--------VRTH-------KTTQLDAIIRGLYDDLNE-EVQLEAMKCLTMVLEKASNDDLESYLLNIA 344 (533)
T ss_pred HHhc---cCcHH--------HHHh-------HHHHHHHHHHHHhcCCcc-HHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence 6651 00000 0000 112345555555555442 356666666655421 1 222
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhcc
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQL 233 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~ 233 (318)
-.++.++.+.++.+|.+++..+|.+
T Consensus 345 lrlR~l~~se~~~~R~aa~~Lfg~L 369 (533)
T KOG2032|consen 345 LRLRTLFDSEDDKMRAAAFVLFGAL 369 (533)
T ss_pred HHHHHHHHhcChhhhhhHHHHHHHH
Confidence 2334445556666666666555543
No 150
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=90.66 E-value=0.93 Score=34.74 Aligned_cols=106 Identities=25% Similarity=0.215 Sum_probs=64.3
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHH
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAA 241 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~ 241 (318)
.+....|+++|+++.... ....+..|.+- |.+++. ..|....+ ...---+..|+..||.|.....+..
T Consensus 21 a~Qt~~lielLk~~~~~~--~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYNV~~ 98 (154)
T PF11791_consen 21 AEQTAELIELLKNPPAGE--EAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYNVQP 98 (154)
T ss_dssp HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTTHHH
T ss_pred HHHHHHHHHHHhCCCCcc--HHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCcHHH
Confidence 456778899998877653 66677777665 222222 22222222 2233447789999999998888999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhcC
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAKD 281 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~ 281 (318)
|++++.+. +..+...|+++|...-- -++..-+..+.+.
T Consensus 99 LI~~L~~~--d~~lA~~Aa~aLk~TlLvyDaf~dv~~~ak~ 137 (154)
T PF11791_consen 99 LIDLLKSD--DEELAEEAAEALKNTLLVYDAFNDVAELAKA 137 (154)
T ss_dssp HHHGG--G---TTTHHHHHHHHHT--TTCCHHHHHHHHHHT
T ss_pred HHHHHcCC--cHHHHHHHHHHHHhhHHHHhhHHHHHHHHHc
Confidence 99999876 78899999999988531 1235555555555
No 151
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=90.28 E-value=7.5 Score=40.92 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=42.6
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccC-----------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIA-----------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
..+..|++.|+.. .-.+--+++-+|.++. +..+++.|..++.+.+..+..-...||.++-.+.
T Consensus 530 NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 530 NCLQTLLQHLKSH--SLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred hHHHHHHHHhhhc--ceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 3556666666654 4555555666666553 3457888888888888888888888888776655
No 152
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=89.76 E-value=1.6 Score=39.79 Aligned_cols=124 Identities=18% Similarity=0.146 Sum_probs=82.1
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC----------ChHHHHHHhccCCCHHHHHHHHH----HHhccCCCC
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP----------GPRDALIRATKDSSNLLAHEAAF----ALGQMQDAE 80 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~----------~~~~~L~~~l~d~~~~vr~~a~~----aL~~~~~~~ 80 (318)
.+.+..+.+.|.+.. +...|..|++.|+++... -++..+++.-+|.++.+-..|.. .+..+....
T Consensus 328 ~~iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 328 AEILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHHccch-hhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 455667788888833 238999999999987541 23444444456776655444443 355555667
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhc----C-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAI----G-------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~----~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+..+..++. ..|...-..++..+-++ . -++..|.+++.+ ......||+.++.+|..+-
T Consensus 407 ~I~~i~~~Il--t~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay-~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 407 CIVNISPLIL--TADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAY-DSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHhhHHh--cCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHh-cCchHHhhhhHHHhHHHHH
Confidence 7888888888 34444444556544433 2 256788888855 6778999999999998664
No 153
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=89.53 E-value=4.5 Score=32.13 Aligned_cols=92 Identities=17% Similarity=0.042 Sum_probs=64.7
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV 123 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~ 123 (318)
.|.+.+.+....+-.++.-...+...|..... -....-+++|...=+|+.||..|++.|..+++.+ .++.|++++.
T Consensus 37 ~p~aL~~~l~sv~w~~~~~v~e~~~lL~~W~~-i~~~~aLeLL~~~f~d~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 115 (171)
T cd00872 37 KPQALPKLLLSVKWNKRDDVAQMYQLLKRWPK-LKPEQALELLDCNFPDEHVREFAVRCLEKLSDDELLQYLLQLVQVLK 115 (171)
T ss_pred CcHHHHHHHhhCCCCCHHHHHHHHHHHHCCCC-CCHHHHHHHCCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 47788888887777777777778888887766 4445556666644467999999999999988765 4677777665
Q ss_pred cCC---CHHHHHHHHHHHH
Q 021051 124 SDP---AQEVRETCELALE 139 (318)
Q Consensus 124 ~d~---~~~vr~~a~~aL~ 139 (318)
.++ ++-++.-.-+++.
T Consensus 116 yE~~~ds~La~FLl~Ral~ 134 (171)
T cd00872 116 YEPYHDSDLVRFLLKRALR 134 (171)
T ss_pred cccccCCHHHHHHHHHHhc
Confidence 554 4555555555554
No 154
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=89.49 E-value=4.4 Score=38.29 Aligned_cols=177 Identities=23% Similarity=0.173 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcC--CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccH
Q 021051 98 VRHEAAEALGAIG--LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSV 175 (318)
Q Consensus 98 vR~~a~~~L~~~~--~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 175 (318)
++.+.++.|+... +.+.+..++- ...|++..|-..+...|.++.- . +.++..+
T Consensus 220 ~K~~il~fL~sg~f~d~~~~~~~li-Asad~~~~V~~~ae~~LKr~~~-----------------~-------~ed~~~V 274 (501)
T PF13001_consen 220 RKLAILKFLASGFFPDEERFPPLLI-ASADSNSSVSDRAEDLLKRLSV-----------------S-------LEDPDLV 274 (501)
T ss_pred HHHHHHHHHHhcCCCcHhHHhheee-EEeCCcchHHHHHHHHHhhcCC-----------------C-------CCCHHHH
Confidence 5666666666543 3234444443 3478888999999999988761 0 2235567
Q ss_pred HHHHHHHc--C-------CCcChHHHHHHHHHHHhC-----CChhHHHHHHHHhCCC--CHHHHHHHHHHH---hccC--
Q 021051 176 DMLREVLL--G-------EEKGMYERYAALFALRNH-----GGDEAVSAIIDSLGAT--SALLKHEVAYVL---GQLQ-- 234 (318)
Q Consensus 176 ~~L~~~l~--~-------~~~~~~~r~~a~~~L~~~-----~~~~~~~~l~~~l~d~--~~~vr~~a~~~L---~~~~-- 234 (318)
..|+.+.. . +..+..+|...+..|.+- ..+..+..+...+.++ +..+|..++..+ ....
T Consensus 275 ~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~ 354 (501)
T PF13001_consen 275 DRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKH 354 (501)
T ss_pred HHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCccccccchhcchhhhcchHHhhh
Confidence 77777776 2 011223466666666543 2245556666666666 566666666666 2221
Q ss_pred -CcchHHHHHHH--------Hh------ccCCCHHHHHHHHHHHhccC---------ChhhHHHHHHhhcCCCHHHHHHH
Q 021051 235 -NKAASAALSDV--------LR------NVNEHPMVRHEAAEALGSIA---------DDQSIGLLKEFAKDPEPIVSQSC 290 (318)
Q Consensus 235 -~~~~~~~L~~~--------l~------~~~~~~~vr~~a~~aL~~~~---------~~~~~~~L~~~l~~~~~~vr~~a 290 (318)
.+..+..+... +. ...++..+|..+.++||.++ +-..+..|.+.+.++.+++|..+
T Consensus 355 ~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sI 434 (501)
T PF13001_consen 355 ISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSI 434 (501)
T ss_pred cCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHH
Confidence 12222222222 21 12247889999999999986 23467888888888999999999
Q ss_pred HHHHHhchh
Q 021051 291 EVALSMLEY 299 (318)
Q Consensus 291 ~~aL~~l~~ 299 (318)
..||..+..
T Consensus 435 qeALssl~~ 443 (501)
T PF13001_consen 435 QEALSSLAP 443 (501)
T ss_pred HHHHHHHHH
Confidence 999987754
No 155
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.32 E-value=1.1 Score=38.63 Aligned_cols=124 Identities=18% Similarity=0.221 Sum_probs=66.3
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
-++..+......|.+++ |.....++..+..+.. .+.+-.+.+-+++....|-.+|+.+++.+-..
T Consensus 85 ~p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~ 162 (334)
T KOG2933|consen 85 DPEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNN 162 (334)
T ss_pred cHHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666777664 7777777777664422 12344444555666667777777777654310
Q ss_pred ---CcHHHH-HHhhh-cCCCCHHHHHHHHHHHHhcCCC----CcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 80 ---EAIPAL-EAVLN-DFSLHPIVRHEAAEALGAIGLE----SNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 80 ---~~~~~L-~~~l~-~~~~~~~vR~~a~~~L~~~~~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
+..+.+ ..++. ...++.+||..|-.+|..+-++ ..++.|+. .....++.+|..+...+.
T Consensus 163 ~i~~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~-~~~~~n~r~r~~a~~~~~ 230 (334)
T KOG2933|consen 163 SIDQELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIP-ILQHSNPRVRAKAALCFS 230 (334)
T ss_pred HHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHH-HHhhhchhhhhhhhcccc
Confidence 112222 22222 1134566777777766655332 23455555 335556666655554443
No 156
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=89.31 E-value=7.4 Score=39.37 Aligned_cols=93 Identities=24% Similarity=0.289 Sum_probs=60.6
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCCC-------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---------C
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQDA-------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL---------E 112 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~---------~ 112 (318)
.+++.|.+.++|.+..||.-|+..+|++... .++..+.+++.. -+++..-++++-+|+.++- +
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~vi~svid~~~p-~e~~~aWHgacLaLAELA~rGlLlps~l~ 419 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQVIGSVIDLFNP-AEDDSAWHGACLALAELALRGLLLPSLLE 419 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHhcCc-CCchhHHHHHHHHHHHHHhcCCcchHHHH
Confidence 3566777778999999999999999997742 345555665552 3344444588888887753 2
Q ss_pred CcHHHHHhhhccC-------CCHHHHHHHHHHHHHHH
Q 021051 113 SNIPLLKNSLVSD-------PAQEVRETCELALERIE 142 (318)
Q Consensus 113 ~~~~~L~~~l~~d-------~~~~vr~~a~~aL~~~~ 142 (318)
+++|.+.+.+.-| ....||.+|....=.+.
T Consensus 420 dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~ 456 (1133)
T KOG1943|consen 420 DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFA 456 (1133)
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHH
Confidence 4566666645433 23567777765544433
No 157
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=89.26 E-value=0.67 Score=26.53 Aligned_cols=28 Identities=29% Similarity=0.254 Sum_probs=19.7
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 270 QSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
++++.|.+++.++++.++..++++|.++
T Consensus 12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3567777777766777777777777665
No 158
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.03 E-value=23 Score=34.27 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=52.7
Q ss_pred CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch--hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 234 QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD--QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 234 ~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~--~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
+..-++-.+-..+.-. .+.+|++.=.++|-+. +| +..+.|.++..|.+.+|...++.|++.++-++..
T Consensus 637 g~eM~lR~f~h~l~yg--e~~iRravPLal~llsvSNPq~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN 708 (878)
T KOG2005|consen 637 GSEMVLRHFGHLLHYG--EPHIRRAVPLALGLLSVSNPQVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN 708 (878)
T ss_pred hhHHHHHHHHHHHHcC--CHHHHHHHHHHHhhhccCCCcchHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence 3344555566666654 7899999888888774 44 4789999999999999999999999999877653
No 159
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.56 E-value=21 Score=33.20 Aligned_cols=264 Identities=15% Similarity=0.114 Sum_probs=140.6
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC---C-------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLK---G-------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
...+..|.+.|.-.+. ..-...+..|.++. . ...++.|.+++...++.+|...+..+-.+..
T Consensus 303 kniV~mLVKaLdr~n~--~Ll~lv~~FLkKLSIf~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~glr~ 380 (791)
T KOG1222|consen 303 KNIVAMLVKALDRSNS--SLLTLVIKFLKKLSIFDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSGLRP 380 (791)
T ss_pred HhHHHHHHHHHcccch--HHHHHHHHHHHHhhhhccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccccccH
Confidence 4466777777876664 45555555554432 1 3578888888888888999888888866552
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc-------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAI-------GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS 147 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~ 147 (318)
...+|.+..++.+ +....+-...+.-++.- ...+.++.+.+.+....+..|-...+.--.++. .+.
T Consensus 381 KMv~~GllP~l~~ll~~-d~~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~--lnk 457 (791)
T KOG1222|consen 381 KMVNGGLLPHLASLLDS-DTKHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLC--LNK 457 (791)
T ss_pred HHhhccchHHHHHHhCC-cccchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHH--hcc
Confidence 2467888888882 33333333333333221 124566777766665556666554443333333 000
Q ss_pred CccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---h---hHHHHHHHHh-CCCCH
Q 021051 148 GSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---D---EAVSAIIDSL-GATSA 220 (318)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---~---~~~~~l~~~l-~d~~~ 220 (318)
.. ... ....+.+..|.+..-...+.. -...+..+..... . +.+..|...+ ++.+.
T Consensus 458 RN---------aQl-------vceGqgL~~LM~ra~k~~D~l--LmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E 519 (791)
T KOG1222|consen 458 RN---------AQL-------VCEGQGLDLLMERAIKSRDLL--LMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSE 519 (791)
T ss_pred cc---------ceE-------EecCcchHHHHHHHhcccchH--HHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchH
Confidence 00 000 001233444444332222222 2222222222211 1 2223333333 45666
Q ss_pred HHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhh
Q 021051 221 LLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFA 279 (318)
Q Consensus 221 ~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l 279 (318)
..-.+++..|+.++- ...+|++...+.......++....+.++|.... ...++.|++++
T Consensus 520 ~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlieLL 599 (791)
T KOG1222|consen 520 SFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIELL 599 (791)
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHHHH
Confidence 667777777777653 456788888886433234577778888887652 34677788776
Q ss_pred cC---CCHHHHHHHHHHHHhchhhhc
Q 021051 280 KD---PEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 280 ~~---~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+. +++.|-+ .+....++-.+++
T Consensus 600 ~a~QeDDEfV~Q-iiyVF~Q~l~He~ 624 (791)
T KOG1222|consen 600 QACQEDDEFVVQ-IIYVFLQFLKHEL 624 (791)
T ss_pred HhhcccchHHHH-HHHHHHHHHHHHH
Confidence 43 4455544 4444444444444
No 160
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=88.42 E-value=4 Score=40.51 Aligned_cols=133 Identities=20% Similarity=0.179 Sum_probs=84.6
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHh----cC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGA----IG-------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~----~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
+.+|.|+...+ ..+...|..-+.+|++ .+ -+...|.|.+ .+.=+|..||-.+...+.-+-. .+.
T Consensus 867 ~ivP~l~~~~~--t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq-~Ls~~D~~v~vstl~~i~~~l~--~~~ 941 (1030)
T KOG1967|consen 867 DIVPILVSKFE--TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQ-ALSMPDVIVRVSTLRTIPMLLT--ESE 941 (1030)
T ss_pred hhHHHHHHHhc--cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHH-hcCCCccchhhhHhhhhhHHHH--hcc
Confidence 67888888888 5566666666666654 33 2456788888 4577899999888887775541 010
Q ss_pred ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc-ChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhC
Q 021051 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK-GMYERYAALFALRNHGG-----------DEAVSAIIDSLG 216 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~ 216 (318)
.-..+. -...+|.++.+=.+.+. ...||..|++.|..+.. ++.+..|++.|.
T Consensus 942 tL~t~~----------------~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~Ld 1005 (1030)
T KOG1967|consen 942 TLQTEH----------------LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILD 1005 (1030)
T ss_pred ccchHH----------------HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccC
Confidence 000000 01134445444444443 36689999998877643 477778888888
Q ss_pred CCCHHHHHHHHHHHhcc
Q 021051 217 ATSALLKHEVAYVLGQL 233 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~ 233 (318)
|+--.||.+|+.+=+.|
T Consensus 1006 DkKRlVR~eAv~tR~~W 1022 (1030)
T KOG1967|consen 1006 DKKRLVRKEAVDTRQNW 1022 (1030)
T ss_pred cHHHHHHHHHHHHhhhh
Confidence 88888888888776554
No 161
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=88.23 E-value=0.8 Score=32.25 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051 217 ATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~ 269 (318)
+++|.+|..|+..|+.+.. +.....+.+.+.|++.+....+.|+.+|..+|..
T Consensus 17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~~ 79 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSALGPE 79 (92)
T ss_pred cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 3467777777777776532 2455666666776655778999999999999654
No 162
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=87.90 E-value=17 Score=33.47 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=34.0
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
..+|.+.+.++..+...|..-+.+|..+=. +..+|.|++.+.-+ |+.++.++++.|..+
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~ 392 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMI 392 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Confidence 345666666655554455555555544311 34567777777654 666777766666655
No 163
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=87.72 E-value=1.2 Score=32.80 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.4
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 271 SIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 271 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
+...+.+++..+++.||.+|..+++++-.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 45667777888888888888888887654
No 164
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=87.56 E-value=30 Score=33.90 Aligned_cols=95 Identities=17% Similarity=0.110 Sum_probs=72.8
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC--C---------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLK--G---------PGPRDALIRATKDSSNLLAHEAAFALGQMQD----- 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 78 (318)
+-.+++.+.+|.+.++ .++..|...+..+. + -..++.|+.+|.+++..|+..|+.+|-.+-.
T Consensus 232 d~~lpe~i~mL~~q~~--~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDP--SVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccHHHHHHHhccCh--hhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence 4467788888888887 67777777766543 2 2568889999999999999999999976542
Q ss_pred --------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC
Q 021051 79 --------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE 112 (318)
Q Consensus 79 --------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~ 112 (318)
...++.++.++. ..-|..||....-.|.++...
T Consensus 310 ~NKlai~~~~Gv~~l~~~Lr-~t~D~ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 310 SNKLAIKELNGVPTLVRLLR-HTQDDEVRELITGILWNLSSN 350 (717)
T ss_pred ccchhhhhcCChHHHHHHHH-hhcchHHHHHHHHHHhcccch
Confidence 245888899998 247888998888888877644
No 165
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=87.15 E-value=11 Score=37.68 Aligned_cols=124 Identities=12% Similarity=0.111 Sum_probs=88.1
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhC----C-------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-------
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNH----G-------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN------- 235 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~-------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------- 235 (318)
.+|.|...+...... +|..-+.+|.+. . .+...|.|++++.=+|..+|......+-..-.
T Consensus 868 ivP~l~~~~~t~~~~--~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGS--QKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred hHHHHHHHhccCCcc--chhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 467777777622222 366666666543 1 14677888999988898898888777754321
Q ss_pred ---cchHHHHHHHHhccCCC-HHHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 236 ---KAASAALSDVLRNVNEH-PMVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 236 ---~~~~~~L~~~l~~~~~~-~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
...+|.++.+-.+.+.+ -.||..|++.|+.+.. +..+..|.+.+.|+-+.||.+|..+=+.|..
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 23456666665655322 6799999999988753 5789999999999999999999998776644
No 166
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=87.08 E-value=4.9 Score=31.91 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHhccCCc
Q 021051 219 SALLKHEVAYVLGQLQNK 236 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~ 236 (318)
++.||..|+..|..+.+.
T Consensus 84 d~~VR~yAV~~L~~~sd~ 101 (171)
T cd00872 84 DEHVREFAVRCLEKLSDD 101 (171)
T ss_pred CHHHHHHHHHHHHhCCHH
Confidence 345555555555555544
No 167
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.82 E-value=4.3 Score=39.15 Aligned_cols=141 Identities=18% Similarity=0.081 Sum_probs=89.4
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCCc------------HHHHHhhhccCCCHHHHHHHHHHHHHHHh--hh
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAI---GLESN------------IPLLKNSLVSDPAQEVRETCELALERIEK--LK 145 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~~------------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~--~~ 145 (318)
|.|...|+ .++..||..|+..+-.. .+|+. ...|.+ ++.|+-|.||..|...+.++-. |.
T Consensus 177 p~l~R~L~--a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~-LL~d~~p~VRS~a~~gv~k~~s~fWe 253 (1005)
T KOG1949|consen 177 PILWRGLK--ARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYS-LLEDPYPMVRSTAILGVCKITSKFWE 253 (1005)
T ss_pred HHHHHhhc--cCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHH-HhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 44555566 78999999999988653 34443 345666 6789999999999999887641 22
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC---CCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051 146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG---EEKGMYERYAALFALRNHGG--------DEAVSAIIDS 214 (318)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~---~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~ 214 (318)
--. +..+..|+..+.+ .+....||....+.|..+-. +..+|.+...
T Consensus 254 ~iP-----------------------~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~ 310 (1005)
T KOG1949|consen 254 MIP-----------------------PTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYS 310 (1005)
T ss_pred HcC-----------------------HHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchh
Confidence 111 1123333332221 12222468888877766532 2444555566
Q ss_pred hCCCCHHHHHHHHHHHhccCCcch--------HHHHHHHHhcc
Q 021051 215 LGATSALLKHEVAYVLGQLQNKAA--------SAALSDVLRNV 249 (318)
Q Consensus 215 l~d~~~~vr~~a~~~L~~~~~~~~--------~~~L~~~l~~~ 249 (318)
+.|+...||.+++..|-.+++..+ ++.++..+...
T Consensus 311 l~D~se~VRvA~vd~ll~ik~vra~~f~~I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 311 LHDNSEKVRVAFVDMLLKIKAVRAAKFWKICPMDHILVRLETD 353 (1005)
T ss_pred hhccchhHHHHHHHHHHHHHhhhhhhhhccccHHHHHHHHhcc
Confidence 678999999999999999886443 35555555543
No 168
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=86.26 E-value=28 Score=32.17 Aligned_cols=268 Identities=13% Similarity=0.026 Sum_probs=137.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-------CChHH----HHHHhccCC-CHHHHHHHHHHHhccC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-------PGPRD----ALIRATKDS-SNLLAHEAAFALGQMQ------ 77 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-------~~~~~----~L~~~l~d~-~~~vr~~a~~aL~~~~------ 77 (318)
..-..+..+|..++ +.+...++..+..+-. ....+ -|...++.. +...+..++.+|+.+-
T Consensus 101 ~~~~~fl~lL~~~d--~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R 178 (429)
T cd00256 101 KTWEPFFNLLNRQD--QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR 178 (429)
T ss_pred cchHHHHHHHcCCc--hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH
Confidence 34455566776655 3788888888876631 11222 333344332 3445555555554421
Q ss_pred ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051 78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIEK 143 (318)
Q Consensus 78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~ 143 (318)
....++.|.+++.+...+..+...++.++.-+. ..+.++.|...+....-+.|-+.+..++.++-+
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 224788888888832224566666666554332 345778888866666677788888888887761
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----hhHH-HHHHHH---
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----DEAV-SAIIDS--- 214 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----~~~~-~~l~~~--- 214 (318)
..........+ . ..+-...++.++..|.........-...+..|...=. -... ++..++
T Consensus 259 -~~~~~~~~~~~--------~---~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg 326 (429)
T cd00256 259 -KRVDREVKKTA--------A---LQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSG 326 (429)
T ss_pred -cccccchhhhH--------H---HHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcC
Confidence 10000000000 0 0000112344444444433332222333333322100 0000 111111
Q ss_pred -hC----C-CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHH
Q 021051 215 -LG----A-TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKE 277 (318)
Q Consensus 215 -l~----d-~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~ 277 (318)
|. + +..-++..+-..- -.+-+.+..|.+++..+ .|+.+-.-|+.-+|.+- . -++-..+.+
T Consensus 327 ~L~WSp~H~se~FW~EN~~kf~--~~~~~llk~L~~iL~~s-~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~ 403 (429)
T cd00256 327 RLHWSPVHKSEKFWRENADRLN--EKNYELLKILIHLLETS-VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMR 403 (429)
T ss_pred CccCCCCCCCchHHHHHHHHHH--hcchHHHHHHHHHHhcC-CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHH
Confidence 11 1 1233444444432 12235677888888543 26666666666666652 1 124566788
Q ss_pred hhcCCCHHHHHHHHHHHHhchhh
Q 021051 278 FAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 278 ~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
++..+++.||.+|..+++++--+
T Consensus 404 Lm~h~d~~Vr~eAL~avQklm~~ 426 (429)
T cd00256 404 LLNHEDPNVRYEALLAVQKLMVH 426 (429)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHh
Confidence 89999999999999999987543
No 169
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=85.90 E-value=5.1 Score=31.33 Aligned_cols=121 Identities=19% Similarity=0.101 Sum_probs=72.4
Q ss_pred HHHHHHHHcC--CCcChHHHHHHHHHHHhCCC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------
Q 021051 175 VDMLREVLLG--EEKGMYERYAALFALRNHGG-------DEAVSAIIDSLGATSALLKHEVAYVLGQL------------ 233 (318)
Q Consensus 175 ~~~L~~~l~~--~~~~~~~r~~a~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------ 233 (318)
+..++..+.. ..+. +|..+.-++.++-+ +...+.+...+.+.+..-...++.++..+
T Consensus 5 l~~lL~~L~~~~~~~~--~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~ 82 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEE--VRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELF 82 (157)
T ss_dssp CCHHHHHHHCTTTSCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHC
T ss_pred HHHHHHHhcccCCCHh--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4445555543 3334 48877777765521 12223333344333222344455555443
Q ss_pred CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhc-CCCHH-HHHHHHHHHHhc
Q 021051 234 QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAK-DPEPI-VSQSCEVALSML 297 (318)
Q Consensus 234 ~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~-~~~~~-vr~~a~~aL~~l 297 (318)
..++..+.+...+....++..+...+++.|..-.. .+.++.|.+.++ ++++. +|..|..+|.++
T Consensus 83 ~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~Kl 157 (157)
T PF11701_consen 83 LSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCKL 157 (157)
T ss_dssp CTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhcC
Confidence 23667888888888223389999999999887643 356899999885 56666 888888888764
No 170
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=85.62 E-value=9.4 Score=30.16 Aligned_cols=79 Identities=15% Similarity=0.122 Sum_probs=56.4
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV 123 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~ 123 (318)
.+.+.+.+....+=.++.....+...|..... -....-+++|...=.++.||..|++.|..+++.+ .++.|++++.
T Consensus 44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~-i~~~~aLeLL~~~f~~~~VR~yAV~~L~~~sd~eL~~yL~QLVQaLK 122 (166)
T cd00870 44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAK-IDIEDALELLSPYFTNPVVRKYAVSRLKLASDEELLLYLLQLVQALK 122 (166)
T ss_pred CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCC-CCHHHHHHHcCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46777777776655566667777788887766 4455556777743468999999999999988755 4677777665
Q ss_pred cCC
Q 021051 124 SDP 126 (318)
Q Consensus 124 ~d~ 126 (318)
.+.
T Consensus 123 yE~ 125 (166)
T cd00870 123 YEN 125 (166)
T ss_pred hcc
Confidence 554
No 171
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=85.21 E-value=1.5 Score=24.95 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=17.9
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
..++.|++++.+. ++.++..++++|.++
T Consensus 12 g~i~~L~~ll~~~--~~~i~~~a~~aL~nl 39 (41)
T smart00185 12 GGLPALVELLKSE--DEEVVKEAAWALSNL 39 (41)
T ss_pred CCHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 3566666666644 666777777766654
No 172
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.20 E-value=0.73 Score=34.02 Aligned_cols=58 Identities=17% Similarity=0.180 Sum_probs=27.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C---------ChHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P---------GPRDALIRATKDSSNLLAHEAAFALG 74 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~ 74 (318)
+.+..|+++|..++ |..+-.-|+.-+|.+-. | .+...++++++++|+.||..|+.++.
T Consensus 43 ~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQ 111 (119)
T PF11698_consen 43 ELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQ 111 (119)
T ss_dssp HHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 46667777774332 12455555555555421 1 23334444445555555555554443
No 173
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=85.13 E-value=7.7 Score=29.34 Aligned_cols=46 Identities=9% Similarity=-0.127 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 30 QPISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQ 75 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 75 (318)
+||..-...+..+... +..+++..|.+.++++++.++..|+..|..
T Consensus 16 ~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~n~~vql~AL~lLd~ 63 (133)
T cd03561 16 PDWALNLELCDLINLKPNGPKEAARAIRKKIKYGNPHVQLLALTLLEL 63 (133)
T ss_pred ccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3566666666666554 334678888888888899998888887754
No 174
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=85.11 E-value=8.6 Score=31.48 Aligned_cols=121 Identities=21% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCCC---ChHHHHHHhccCC-CHHHHHHH-HHHHhccCC--CCcHHHHHHhhh
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKGP---GPRDALIRATKDS-SNLLAHEA-AFALGQMQD--AEAIPALEAVLN 90 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~---~~~~~L~~~l~d~-~~~vr~~a-~~aL~~~~~--~~~~~~L~~~l~ 90 (318)
.+.+.++..++.. +.|..|+..+...... ...+.+..++.+- ++.+-... ...++.+.. +...+.+.+.+.
T Consensus 53 ~~l~~~L~~~~~~--E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~~~~~~~~~~W~~ 130 (213)
T PF08713_consen 53 YELADELWESGYR--EERYLALLILDKRRKKLTEEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKHPEALELLEKWAK 130 (213)
T ss_dssp HHHHHHHHCSSCH--HHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHHGGHHHHHHHHHH
T ss_pred HHHHHHHcCCchH--HHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 4455666777765 8999999999764331 2356777777543 55555444 555555421 467788888888
Q ss_pred cCCCCHHHHHHHHHHHHhcCCCCcHHHHHh---hhccCCCHHHHHHHHHHHHHHH
Q 021051 91 DFSLHPIVRHEAAEALGAIGLESNIPLLKN---SLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 91 ~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~---~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
++++.+|+.++..+.........+.+.. ....|++..||++..++|..++
T Consensus 131 --s~~~w~rR~~~v~~~~~~~~~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~ 183 (213)
T PF08713_consen 131 --SDNEWVRRAAIVMLLRYIRKEDFDELLEIIEALLKDEEYYVQKAIGWALREIG 183 (213)
T ss_dssp --CSSHHHHHHHHHCTTTHGGGCHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHC
T ss_pred --CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 8999999999877765443333333222 2457899999999999999887
No 175
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=84.90 E-value=50 Score=33.98 Aligned_cols=59 Identities=22% Similarity=0.146 Sum_probs=33.5
Q ss_pred HHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC
Q 021051 53 ALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL 111 (318)
Q Consensus 53 ~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~ 111 (318)
.....| .|.|..-+..|++.|...........|...+.+..-...+|..|+.+|++...
T Consensus 646 Mw~~QLr~drDVvAQ~EAI~~le~~p~~~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~ 705 (1180)
T KOG1932|consen 646 MWVYQLRQDRDVVAQMEAIESLEALPSTASRSALTRTLEDERYFYRIRIAAAFALAKTAN 705 (1180)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHcCCcchhHHHHHHHHhhcchhhHHHHHHHHHHHHhhc
Confidence 333344 45566666666666666665555566666666323335666666666665543
No 176
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=84.72 E-value=7.4 Score=30.76 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=38.0
Q ss_pred ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhH
Q 021051 204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSI 272 (318)
Q Consensus 204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~ 272 (318)
.+.+++.+....+=.++.-..++...|..+...+.... ++++...-.++.||.-|++.|..+++++..
T Consensus 44 ~p~aL~~~L~sv~W~~~~e~~e~~~lL~~W~~i~~~~a-LeLL~~~f~~~~VR~yAV~~L~~~sd~eL~ 111 (166)
T cd00870 44 NKKALTKFLKSVNWSDEQEVKQALELMPKWAKIDIEDA-LELLSPYFTNPVVRKYAVSRLKLASDEELL 111 (166)
T ss_pred CcHHHHHHhhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHcCccCCCHHHHHHHHHHHHhCCHHHHH
Confidence 45566666555544455555566666666665443333 333332222567777777777777666543
No 177
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=84.53 E-value=9.5 Score=29.65 Aligned_cols=78 Identities=18% Similarity=0.165 Sum_probs=55.1
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS 124 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~ 124 (318)
+.+.+.+.+.+.-.++.-...+...|....... ...-+++|...-.++.||..|++.|...++.+ .+|.|++++..
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~-~~~aL~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLky 116 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLS-PEDALELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALKY 116 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCC-HHHHHHHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 567788887777777777788888887765533 44445555533367999999999999887654 46777776655
Q ss_pred CC
Q 021051 125 DP 126 (318)
Q Consensus 125 d~ 126 (318)
|+
T Consensus 117 e~ 118 (152)
T cd00864 117 EP 118 (152)
T ss_pred cc
Confidence 54
No 178
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.27 E-value=3.3 Score=33.43 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhc------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAI------GLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+.++++.. +++..+|..|++.+..+ .....+|.|+. |..|+++.+|..|...+..+.
T Consensus 10 l~~Il~~~~--~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIA-L~ts~~~~ir~~A~~~l~~l~ 73 (187)
T PF12830_consen 10 LKNILELCL--SSDDSVRLAALQVLELILRQGLVNPKQCVPTLIA-LETSPNPSIRSRAYQLLKELH 73 (187)
T ss_pred HHHHHHHHh--CCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhh-hhCCCChHHHHHHHHHHHHHH
Confidence 344555555 56666666666666543 12345666666 556666666666666666554
No 179
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=84.14 E-value=10 Score=34.94 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=85.5
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhH--------HHHHHHHhC-CCCHHHHHHHHHHHhccCC-c-c---
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEA--------VSAIIDSLG-ATSALLKHEVAYVLGQLQN-K-A--- 237 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~--------~~~l~~~l~-d~~~~vr~~a~~~L~~~~~-~-~--- 237 (318)
...+..|++++..++....||..+...|..+-..+. +..|..+.+ ...++..+..+..|+.|-. . +
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~ 258 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAKEREPVELARSVAGILEHMFKHSEETCQ 258 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHH
Confidence 346889999999999988889999998877643222 222333222 3456777777888887632 1 2
Q ss_pred ------hHHHHHHHHhccCCCHHHHHHHHHHHhccC------------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 238 ------ASAALSDVLRNVNEHPMVRHEAAEALGSIA------------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 238 ------~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
.++.++-..... +|.+-+.++.+||++. ...+-+.|.-+..+.++-.|..|+.|+..+..
T Consensus 259 ~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vlat 336 (832)
T KOG3678|consen 259 RLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVLAT 336 (832)
T ss_pred HHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhhhh
Confidence 223333333444 7888889999999974 23355666666667788999999999988765
Q ss_pred h
Q 021051 300 E 300 (318)
Q Consensus 300 ~ 300 (318)
.
T Consensus 337 ~ 337 (832)
T KOG3678|consen 337 N 337 (832)
T ss_pred h
Confidence 4
No 180
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=83.83 E-value=1.7 Score=43.27 Aligned_cols=106 Identities=16% Similarity=0.237 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhccCC------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051 33 SERFRALFSLRNLKG------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR 99 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR 99 (318)
.+|..+.-+++++.- ...+|.|.+-|. .....+|-..+-+++.+.. +..+|.+...|. |+++.||
T Consensus 946 ~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~--Dp~~iVR 1023 (1529)
T KOG0413|consen 946 KVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLC--DPSVIVR 1023 (1529)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhc--CchHHHH
Confidence 688888888888743 346777777663 5567788777777776552 367999999999 9999999
Q ss_pred HHHHHHHHhcCCCC--------cHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 100 HEAAEALGAIGLES--------NIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 100 ~~a~~~L~~~~~~~--------~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.++..|+++-..+ .+..+.. + -|.++.+|..+-..++.+-
T Consensus 1024 rqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~-l-~D~~edIr~~a~f~~~~vL 1072 (1529)
T KOG0413|consen 1024 RQTIILLARLLQFGIVKWNGELFIRFMLA-L-LDANEDIRNDAKFYISEVL 1072 (1529)
T ss_pred HHHHHHHHHHHhhhhhhcchhhHHHHHHH-H-cccCHHHHHHHHHHHHHHH
Confidence 99999998865433 3445555 3 3889999999999998764
No 181
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=83.52 E-value=13 Score=29.35 Aligned_cols=92 Identities=15% Similarity=0.018 Sum_probs=57.5
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV 123 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~ 123 (318)
.|.+.+.+.....+.+..-...+...|....... ...-+++|...=++..||..|++.|....+.+ .++.|++++.
T Consensus 37 ~p~aLp~~L~s~~~w~~~~~~e~~~LL~~W~p~~-p~~ALeLL~~~f~d~~VR~yAV~~L~~~~ddeL~~yLpQLVQaLk 115 (169)
T cd00869 37 EPNALPLVLASAPSWDWANLMDVYQLLHQWAPLR-PLIALELLLPKFPDQEVRAHAVQWLARLSNDELLDYLPQLVQALK 115 (169)
T ss_pred CcHHHHHHHHhcccCcHHHHHHHHHHHhCCCCCC-HHHHHHHcCCcCCChHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4677888877553333333445566666665533 44445555533467889999999999988755 4677778676
Q ss_pred cCC---CHHHHHHHHHHHH
Q 021051 124 SDP---AQEVRETCELALE 139 (318)
Q Consensus 124 ~d~---~~~vr~~a~~aL~ 139 (318)
.|. ++-.+.-.-+++.
T Consensus 116 yE~~~~s~L~~FLl~RAl~ 134 (169)
T cd00869 116 FELYLKSALVRFLLSRSLV 134 (169)
T ss_pred ccccCcChHHHHHHHHHhc
Confidence 555 3555555555544
No 182
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=83.32 E-value=38 Score=31.38 Aligned_cols=232 Identities=17% Similarity=0.127 Sum_probs=113.4
Q ss_pred CCCChHHHHHHhccCCC--HHHHHHHHHHHhccCCCC--------cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----
Q 021051 46 KGPGPRDALIRATKDSS--NLLAHEAAFALGQMQDAE--------AIPALEAVLNDFSLHPIVRHEAAEALGAIGL---- 111 (318)
Q Consensus 46 ~~~~~~~~L~~~l~d~~--~~vr~~a~~aL~~~~~~~--------~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~---- 111 (318)
......+.|++.+..++ ..||..+.+.|.++-... ....++.+.+ ..+.+...+..+..|+++=.
T Consensus 177 R~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~aeN~d~va~~~~~~Il~lAK-~~e~~e~aR~~~~il~~mFKHSee 255 (832)
T KOG3678|consen 177 RLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVAENRDRVARIGLGVILNLAK-EREPVELARSVAGILEHMFKHSEE 255 (832)
T ss_pred hccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhhhhhhHHhhccchhhhhhhh-hcCcHHHHHHHHHHHHHHhhhhHH
Confidence 34566777777776664 356888888776544211 1233334444 23444555555555554321
Q ss_pred -------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc-cccCCCCcccCCCCCCCCCccHHHHHHHHc
Q 021051 112 -------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS-MTERSPFMSVDPAAPASSCSSVDMLREVLL 183 (318)
Q Consensus 112 -------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~ 183 (318)
.+.++.++- --.-.+|.+.+-++.+|+++. .+....+.. +. .+.+.+-|+-+..
T Consensus 256 t~~~Lvaa~~lD~vl~-~~rRt~P~lLRH~ALAL~N~~--L~~~~a~qrrmv---------------eKr~~EWLF~LA~ 317 (832)
T KOG3678|consen 256 TCQRLVAAGGLDAVLY-WCRRTDPALLRHCALALGNCA--LHGGQAVQRRMV---------------EKRAAEWLFPLAF 317 (832)
T ss_pred HHHHHHhhcccchhee-ecccCCHHHHHHHHHHhhhhh--hhchhHHHHHHH---------------Hhhhhhhhhhhhc
Confidence 122332222 113346888888888888876 222221100 00 1122333444444
Q ss_pred CCCcChHHHHHHHHHHHhCCChhHH-HHHH---------HHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051 184 GEEKGMYERYAALFALRNHGGDEAV-SAII---------DSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP 253 (318)
Q Consensus 184 ~~~~~~~~r~~a~~~L~~~~~~~~~-~~l~---------~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~ 253 (318)
+.++- .|.-|.-+...+....-+ +.+. .++..-||..-..=..-..+-..++-++.|+.++.+. .-
T Consensus 318 skDel--~R~~AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~--R~ 393 (832)
T KOG3678|consen 318 SKDEL--LRLHACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSN--RL 393 (832)
T ss_pred chHHH--HHHHHHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcc--hh
Confidence 44333 477777666655432222 1111 1222222221111111111222356677788887643 33
Q ss_pred HHHH---------HHHHHHhc----cCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 254 MVRH---------EAAEALGS----IADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 254 ~vr~---------~a~~aL~~----~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+.|- +++..+.. +.+-.+|+.|.++..+++..-..-|..||..|+..
T Consensus 394 EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 394 EAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEE 453 (832)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccc
Confidence 3321 22222211 12346888999988888877777788888877543
No 183
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=82.64 E-value=6.4 Score=31.71 Aligned_cols=79 Identities=22% Similarity=0.140 Sum_probs=56.5
Q ss_pred CCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhh
Q 021051 46 KGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSL 122 (318)
Q Consensus 46 ~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l 122 (318)
..|++.+.+...++-.++.....+...|..+.. -....-+++|...-+++.||..|++.|....+.+ .+|.|++++
T Consensus 42 ~~p~aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaL 120 (184)
T PF00613_consen 42 NNPEALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPDPFVRQYAVRRLESLSDEELLFYLPQLVQAL 120 (184)
T ss_dssp TSGGGHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT---HHHHHHHHHHHCTS-HHHHHHHHHHHHHHG
T ss_pred hCchHHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 346788888887777777777888888888777 3444456677643467999999999999887654 578888877
Q ss_pred ccC
Q 021051 123 VSD 125 (318)
Q Consensus 123 ~~d 125 (318)
..+
T Consensus 121 r~e 123 (184)
T PF00613_consen 121 RYE 123 (184)
T ss_dssp GGS
T ss_pred eec
Confidence 666
No 184
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=82.61 E-value=3.1 Score=40.10 Aligned_cols=107 Identities=18% Similarity=0.161 Sum_probs=82.0
Q ss_pred HHHHHHHHHHhccC---C---CChHHHHHHhc-cCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051 33 SERFRALFSLRNLK---G---PGPRDALIRAT-KDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR 99 (318)
Q Consensus 33 ~~r~~A~~~l~~~~---~---~~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR 99 (318)
.....|.-.|.++- . .+-.|.|+..+ ++++|.+|..|+-.||.+.. +.....|..-|. |.+..||
T Consensus 911 ~lq~aA~l~L~klMClS~~fc~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de~t~yLyrrL~--De~~~V~ 988 (1128)
T COG5098 911 ELQVAAYLSLYKLMCLSFEFCSEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADEHTHYLYRRLG--DEDADVR 988 (1128)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHHHHHHHHHHhc--chhhHHH
Confidence 66666766665541 1 36788888888 59999999999999988652 244567777777 8999999
Q ss_pred HHHHHHHHh------cCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 100 HEAAEALGA------IGLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 100 ~~a~~~L~~------~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.|+-.+.. +......+.+.. ++.|+|..+...|..-+..++
T Consensus 989 rtclmti~fLilagq~KVKGqlg~ma~-~L~deda~Isdmar~fft~~a 1036 (1128)
T COG5098 989 RTCLMTIHFLILAGQLKVKGQLGKMAL-LLTDEDAEISDMARHFFTQIA 1036 (1128)
T ss_pred HHHHHHHHHHHHccceeeccchhhhHh-hccCCcchHHHHHHHHHHHHH
Confidence 999987754 345667788888 668999999988888888776
No 185
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=82.39 E-value=14 Score=28.01 Aligned_cols=80 Identities=11% Similarity=0.025 Sum_probs=51.2
Q ss_pred CCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhccC------------CCCcHHHHHHhhhcCCCC
Q 021051 30 QPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQMQ------------DAEAIPALEAVLNDFSLH 95 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~ 95 (318)
+||..-...+..+..-. ..+++..|.+.++++++.+...|+..|..+- ....+..|..++......
T Consensus 16 ~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~ 95 (133)
T smart00288 16 EDWELILEICDLINSTPDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPL 95 (133)
T ss_pred cCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCc
Confidence 34666666666664432 2467888888999999999999988875432 234566666666632222
Q ss_pred HHHHHHHHHHHHhc
Q 021051 96 PIVRHEAAEALGAI 109 (318)
Q Consensus 96 ~~vR~~a~~~L~~~ 109 (318)
+.|+..++..+...
T Consensus 96 ~~Vk~kil~li~~W 109 (133)
T smart00288 96 PLVKKRILELIQEW 109 (133)
T ss_pred HHHHHHHHHHHHHH
Confidence 33777777766654
No 186
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.22 E-value=17 Score=31.62 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhC-CC---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcc-h-----
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNH-GG---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKA-A----- 238 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~-~~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~-~----- 238 (318)
...+.+++.+.++++ |..|+..+..+ +. ...++.+.+++++.++ ...|+.+|.++.... .
T Consensus 5 l~elv~ll~~~sP~v--~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll 80 (353)
T KOG2973|consen 5 LVELVELLHSLSPPV--RKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL 80 (353)
T ss_pred HHHHHHHhccCChHH--HHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence 556888998988875 99998766544 33 4566778888887776 556777777765432 2
Q ss_pred ---HHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 239 ---SAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 239 ---~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
+..+...+.++ .+.+-...+..|.++.
T Consensus 81 ~~~~k~l~~~~~~p--~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 81 QDLLKVLMDMLTDP--QSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHhcCc--ccchHHHHHHHHHHhc
Confidence 22333333443 3455556666677765
No 187
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=81.82 E-value=5 Score=32.39 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhcc------CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 207 AVSAIIDSLGATSALLKHEVAYVLGQL------QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD 268 (318)
Q Consensus 207 ~~~~l~~~l~d~~~~vr~~a~~~L~~~------~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~ 268 (318)
.++.+.++.-+++..+|..|+..++.+ .+...+|.|+.+..|+ ++.+|..|...+..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSP--NPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHHHH
Confidence 455666666677788888777777643 3456778888877776 77888877777777643
No 188
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=81.35 E-value=12 Score=32.95 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=24.9
Q ss_pred HHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 100 HEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
...+..+....+......|.+ +.+.+|+.+...+...+..+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 92 VELFLELAKQDDSDPYSPFLK-LLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp HHHHHHHHH-TTH--HHHHHH-H-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccchhHHHHHH-HhcCCCHHHHHHHHHHHHHHH
Confidence 344444444333335556666 556779999999999998886
No 189
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=81.25 E-value=11 Score=30.20 Aligned_cols=27 Identities=30% Similarity=0.495 Sum_probs=17.7
Q ss_pred HHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 116 PLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 116 ~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+.|...+..|+++.+|.+|+.++..+-
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL 68 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALL 68 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHH
Confidence 344444667777777777777776654
No 190
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=81.07 E-value=10 Score=28.96 Aligned_cols=78 Identities=15% Similarity=0.077 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhcc------------CCCCcHHHHHHhhhcCCCCH
Q 021051 31 PISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQM------------QDAEAIPALEAVLNDFSLHP 96 (318)
Q Consensus 31 ~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~~~~~~ 96 (318)
||..-...+..+..-.. .+++..|.+.|++.++.++..|+..|..+ +....+..|..++.+....+
T Consensus 22 Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~ 101 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDP 101 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHH
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCc
Confidence 46555556666555422 45777888888889999998888776432 22334555555555322222
Q ss_pred H--HHHHHHHHHHh
Q 021051 97 I--VRHEAAEALGA 108 (318)
Q Consensus 97 ~--vR~~a~~~L~~ 108 (318)
. ||..++..+..
T Consensus 102 ~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 102 ETPVKEKILELLQE 115 (140)
T ss_dssp HSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 2 55555555544
No 191
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=80.34 E-value=16 Score=29.40 Aligned_cols=78 Identities=18% Similarity=0.063 Sum_probs=55.0
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV 123 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~ 123 (318)
.|++.+.+....+=.++.....+...+..... -....-+++|...=+++.||..|++.|...++.+ .++.|++++.
T Consensus 42 ~p~aL~~~L~sv~W~~~~e~~e~~~ll~~W~~-~~~~~aL~LL~~~~~~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr 120 (184)
T smart00145 42 NPKALPKFLLSVNWSDADEVAQALSLLKKWAP-LDPEDALELLSPKFPDPFVRAYAVERLESASDEELLLYLLQLVQALK 120 (184)
T ss_pred ChHHHHHHHhcCCCCCHHHHHHHHHHHHcCCC-CCHHHHHHHhCccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 46777777766665666666677777887765 4445556666633468999999999999988754 4677888665
Q ss_pred cC
Q 021051 124 SD 125 (318)
Q Consensus 124 ~d 125 (318)
.|
T Consensus 121 ~E 122 (184)
T smart00145 121 YE 122 (184)
T ss_pred cc
Confidence 55
No 192
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.33 E-value=4.6 Score=38.99 Aligned_cols=88 Identities=18% Similarity=0.112 Sum_probs=60.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccC-----CC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC--
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLK-----GP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA-- 79 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-----~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-- 79 (318)
...+.++|++..- -.|...+..++++- ++ ..+..|.+.|.|.+|++|..|+..+.++.+.
T Consensus 301 ~~~~~~LLdses~--tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESF--TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccch--hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 4456677777764 78888887777652 11 2344555666788888888888888765432
Q ss_pred -------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 80 -------EAIPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 80 -------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
..+......+. |....||+.|+..++.+
T Consensus 379 k~~~~r~ev~~lv~r~lq--Drss~VRrnaikl~SkL 413 (1128)
T COG5098 379 KTVGRRHEVIRLVGRRLQ--DRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred cccchHHHHHHHHHHHhh--hhhHHHHHHHHHHHHHH
Confidence 23555666677 78888888888887764
No 193
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=80.27 E-value=22 Score=34.75 Aligned_cols=105 Identities=22% Similarity=0.194 Sum_probs=69.9
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--L---------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
...+..+.+|. +.++.+...|..-+..+. + -.-++.|+. ++..+..+|++.+..+|.++-
T Consensus 233 ~~lpe~i~mL~--~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~-Ll~~~~~evq~~acgaLRNLv------ 303 (717)
T KOG1048|consen 233 PTLPEVISMLM--SQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVA-LLDHRNDEVQRQACGALRNLV------ 303 (717)
T ss_pred cccHHHHHHHh--ccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHH-HhcCCcHHHHHHHHHHHHhhh------
Confidence 45677778888 677777766666665443 2 235788888 668899999999999999987
Q ss_pred ccccccccCCCCcccCCCC--CCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh
Q 021051 149 SDGSSMTERSPFMSVDPAA--PASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD 205 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~ 205 (318)
|....... ++.....++++.+.|+...+. .+|..+.-.|-++...
T Consensus 304 -----------f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-ev~e~iTg~LWNLSS~ 350 (717)
T KOG1048|consen 304 -----------FGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-EVRELITGILWNLSSN 350 (717)
T ss_pred -----------cccCCcccchhhhhcCChHHHHHHHHhhcch-HHHHHHHHHHhcccch
Confidence 22222111 111345788999999753322 1477777777777543
No 194
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=80.25 E-value=12 Score=28.75 Aligned_cols=79 Identities=13% Similarity=0.129 Sum_probs=49.5
Q ss_pred CCHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhccC------------CCCcHHHHHHhhhcCCCC
Q 021051 30 QPISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQMQ------------DAEAIPALEAVLNDFSLH 95 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~ 95 (318)
+||..-...+-.+..- +..+++..|.+.+.+.++.+...|+..|..+- ....+..|..++... .+
T Consensus 16 ~dw~~il~icD~I~~~~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~-~~ 94 (144)
T cd03568 16 ENWGLILDVCDKVKSDENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDR-VH 94 (144)
T ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhccc-CC
Confidence 3577766677666553 22467888888888899999888888775322 234455555555521 45
Q ss_pred HHHHHHHHHHHHhc
Q 021051 96 PIVRHEAAEALGAI 109 (318)
Q Consensus 96 ~~vR~~a~~~L~~~ 109 (318)
+.|+..++..+..+
T Consensus 95 ~~Vk~kil~li~~W 108 (144)
T cd03568 95 PTVKEKLREVVKQW 108 (144)
T ss_pred HHHHHHHHHHHHHH
Confidence 56666665555543
No 195
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=80.14 E-value=14 Score=29.20 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhccCCc
Q 021051 220 ALLKHEVAYVLGQLQNK 236 (318)
Q Consensus 220 ~~vr~~a~~~L~~~~~~ 236 (318)
..||..|+..|..+.+.
T Consensus 85 ~~VR~yAV~~L~~~~dd 101 (169)
T cd00869 85 QEVRAHAVQWLARLSND 101 (169)
T ss_pred hHHHHHHHHHHHhCCHH
Confidence 44555555555555444
No 196
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=79.64 E-value=3.9 Score=27.33 Aligned_cols=43 Identities=19% Similarity=0.317 Sum_probs=25.9
Q ss_pred HHHHHHHhccCC----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 021051 67 HEAAFALGQMQD----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG 110 (318)
Q Consensus 67 ~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~ 110 (318)
..++|++|.++. .+.++.++++.++ .+...+|..|+.+|+-+.
T Consensus 5 KaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~-s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 5 KAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAEN-SPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHh-CCccchHHHHHHHHHHHh
Confidence 456666666553 2456666666662 455667777777666654
No 197
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=79.57 E-value=17 Score=28.97 Aligned_cols=86 Identities=21% Similarity=0.147 Sum_probs=48.3
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS 124 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~ 124 (318)
|++.+.++ +..+..-....+..|-.+..-..+..|.-+......++.||..|++.|....+.. .++.|.+++..
T Consensus 40 p~AL~~~l---~~~~~~~~~~~l~~Ll~W~pi~p~~ALell~~~y~~~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLry 116 (175)
T cd00871 40 PEALPFLV---TGKSVDENSPDLKYLLYWAPVSPVQALSLFTPQYPGHPLVLQYAVRVLESYPVETVFFYIPQIVQALRY 116 (175)
T ss_pred HHHHHHHh---CccChhhHHHHHHHHcCCCCCCHHHHHHHhCcccCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 44555554 3333333333445555554433333333333333347889999999999887654 46778887777
Q ss_pred CCCHHHHHHHHH
Q 021051 125 DPAQEVRETCEL 136 (318)
Q Consensus 125 d~~~~vr~~a~~ 136 (318)
|.+..+.+..++
T Consensus 117 d~~~~l~~FLl~ 128 (175)
T cd00871 117 DKMGYVEEYILE 128 (175)
T ss_pred cccchHHHHHHH
Confidence 766555544443
No 198
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=79.30 E-value=6 Score=31.84 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=14.5
Q ss_pred CHHHHHHHHHHHhccCCcc---hHHHHHHHHh
Q 021051 219 SALLKHEVAYVLGQLQNKA---ASAALSDVLR 247 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~~---~~~~L~~~l~ 247 (318)
++.||..|+..|..+.+.+ .+|.|++.++
T Consensus 90 ~~~VR~yAv~~L~~~~d~~l~~yLpQLVQaLr 121 (184)
T PF00613_consen 90 DPFVRQYAVRRLESLSDEELLFYLPQLVQALR 121 (184)
T ss_dssp -HHHHHHHHHHHCTS-HHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhe
Confidence 3566666666665555443 3444555544
No 199
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=78.88 E-value=2.6 Score=30.33 Aligned_cols=42 Identities=26% Similarity=0.210 Sum_probs=26.1
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD 281 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 281 (318)
....|+.+++++ ++.||..|+..+..+...++...|..+.++
T Consensus 48 ~r~aLl~LL~hp--n~~VRl~AA~~~L~~~p~eA~~~Le~ia~~ 89 (106)
T PF09450_consen 48 QRDALLPLLKHP--NMQVRLWAAAHTLRYAPEEARKVLEEIASS 89 (106)
T ss_dssp GGGGGGGGGGSS---HHHHHHHHHTTTTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCC--ChhHHHHHHHHHHHhCHHHHHHHHHHHHHc
Confidence 356666667666 677777777766666666666666665544
No 200
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=78.43 E-value=19 Score=28.99 Aligned_cols=29 Identities=10% Similarity=0.118 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHhccCCcc---hHHHHHHHHh
Q 021051 219 SALLKHEVAYVLGQLQNKA---ASAALSDVLR 247 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~~---~~~~L~~~l~ 247 (318)
++.||..|+..|..+.+.+ .+|.|++.++
T Consensus 89 ~~~Vr~yAV~~L~~~~d~~l~~yLpQLVQaLr 120 (184)
T smart00145 89 DPFVRAYAVERLESASDEELLLYLLQLVQALK 120 (184)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5677777777777776654 3455555554
No 201
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=78.43 E-value=18 Score=28.05 Aligned_cols=75 Identities=23% Similarity=0.238 Sum_probs=44.8
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhh---HHHHHHhhc
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQS---IGLLKEFAK 280 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~---~~~L~~~l~ 280 (318)
+.+++.+...+.-.++.-..++...|..+...+....| .++...-.++.||.-|++.|..+++.+. ++.|+++++
T Consensus 38 p~~lp~~L~sv~w~~~~~~~e~~~lL~~W~~~~~~~aL-~LL~~~~~~~~vr~yAv~~L~~~~~~~l~~ylpQLVQaLk 115 (152)
T cd00864 38 PKALPKLLKSVNWNDDEEVSELYQLLKWWAPLSPEDAL-ELLSPKYPDPVVRQYAVRVLESASDDELLLYLPQLVQALK 115 (152)
T ss_pred hHHHHHHHHHccCCCHHHHHHHHHHHhcCCCCCHHHHH-HHcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 45667777666666666677777777766554443333 3333212267788888888877776653 444444443
No 202
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=77.99 E-value=15 Score=28.63 Aligned_cols=61 Identities=13% Similarity=0.126 Sum_probs=41.9
Q ss_pred ChhHHHHHHHHhC--CCCHHHHHHHHHHHhccCC---------cchHHHHHHHHhccCCCHH-HHHHHHHHHhc
Q 021051 204 GDEAVSAIIDSLG--ATSALLKHEVAYVLGQLQN---------KAASAALSDVLRNVNEHPM-VRHEAAEALGS 265 (318)
Q Consensus 204 ~~~~~~~l~~~l~--d~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~~~~~~~~-vr~~a~~aL~~ 265 (318)
.++..+.+..... ..+..+...++++|..-.. +...++|.+.++..+ +.. +|..|+-.|.+
T Consensus 84 ~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~-~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 84 SEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSK-DDSEIRVLAAVGLCK 156 (157)
T ss_dssp TTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC--HH-CHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccc-chHHHHHHHHHHHhc
Confidence 4566666777666 6788888888888876443 456788999886543 555 88888877765
No 203
>KOG4338 consensus Predicted lipoprotein [Lipid transport and metabolism]
Probab=77.79 E-value=1.1e+02 Score=33.11 Aligned_cols=237 Identities=14% Similarity=0.094 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC--cHHHHHhhhcc----CC-CHHHHHHH
Q 021051 62 SNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES--NIPLLKNSLVS----DP-AQEVRETC 134 (318)
Q Consensus 62 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~--~~~~L~~~l~~----d~-~~~vr~~a 134 (318)
...+|...-.++..+|....+..+.....+...-...+..-+..|-.+..+. +...+++.+.+ ++ .+.+|.++
T Consensus 402 ~~~ir~i~d~~l~~~gTk~ti~~~~~~v~~~k~itP~~as~ik~lv~~pfps~~ia~~liQ~~esf~~i~~d~~~lrQaa 481 (1680)
T KOG4338|consen 402 PEKIRELIDVALALAGTKNTIQHITHHVLNQKSITPLEASRIKLLVEMPFPSLTIAEALIQLLESFHPISEDAEVLRQAA 481 (1680)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhcchhHhhhhhhhhcCCCchHHHHHHHHHHHHhhcccCcccHHHHHHH
Confidence 5567777777778888878888888887742222333333366666665543 23334442322 23 45566665
Q ss_pred HHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHH
Q 021051 135 ELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDS 214 (318)
Q Consensus 135 ~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~ 214 (318)
..+.+-.. -+.....-+.+.........+ ....++.+........+. ........+++.||+.|...+.-.+.+.
T Consensus 482 ~l~a~t~V--~~v~~~~~~~~~~~~iVq~~~--~e~~ek~~n~~~q~~~~~-~t~y~kvl~LK~LgN~gl~lS~~~l~~i 556 (1680)
T KOG4338|consen 482 WLAAGTAV--RGVFCKKPEACEINPIVQEIP--RELKEKYLNVYMQHFGNA-RTRYEKVLALKTLGNAGLDLSVYQLQKI 556 (1680)
T ss_pred HHhhchHh--hhhhhcCchhhhhchhhhhhH--HHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHhhhhhhccchhHHHH
Confidence 55554432 000000000000000000000 000122233333333344 2223566788888888876555566666
Q ss_pred hCCC--CHHHHHHHHHHHhccCCcchH---HHHHHHHhccCCCHHHHHHHHHHHhc-cCChhhHHHHHHhhcC-CCHHHH
Q 021051 215 LGAT--SALLKHEVAYVLGQLQNKAAS---AALSDVLRNVNEHPMVRHEAAEALGS-IADDQSIGLLKEFAKD-PEPIVS 287 (318)
Q Consensus 215 l~d~--~~~vr~~a~~~L~~~~~~~~~---~~L~~~l~~~~~~~~vr~~a~~aL~~-~~~~~~~~~L~~~l~~-~~~~vr 287 (318)
+.+. ...+|..++.++..+.+.... ..|+..+..-...+.+|..+++-+.. ..+..++..+...+.+ .+..|+
T Consensus 557 ir~~q~~~sIrl~aida~R~~d~~~~~~~q~vll~~y~n~~~~se~Rm~al~q~m~t~Pe~~~l~~i~s~l~~e~n~qV~ 636 (1680)
T KOG4338|consen 557 IRNDQQPLSIRLEAIDAFRRLDDAMPRKIQSVLLPVYKNRQLNSELRMYALLQMMHTCPEESVLGQIVSQLEHEENQQVA 636 (1680)
T ss_pred HhhhccccccchhhcchhhhhcccCcchhHHHHHHHHhhccCCHHHHHHHHHHHhccCCCHHHHHHHhhhchhhhhhhHH
Confidence 6543 456888999999988765433 45555554433478999888876665 4566777777776654 567777
Q ss_pred HHHHHHHHhchhhhcc
Q 021051 288 QSCEVALSMLEYEQLE 303 (318)
Q Consensus 288 ~~a~~aL~~l~~~~~~ 303 (318)
.-....|......++.
T Consensus 637 aft~~~L~~~akstsp 652 (1680)
T KOG4338|consen 637 AFTWSVLRNFAKSTSP 652 (1680)
T ss_pred HhHHHHHHhhhcCCCc
Confidence 7666666666555553
No 204
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=77.35 E-value=9.5 Score=39.96 Aligned_cols=123 Identities=20% Similarity=0.154 Sum_probs=82.7
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCC----------ChhHHHHHHHHhCCCCHHHHHHHHHHHhcc--CCcc---h
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHG----------GDEAVSAIIDSLGATSALLKHEVAYVLGQL--QNKA---A 238 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~----------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~--~~~~---~ 238 (318)
++|.|...|...+..+ |..|+..+|.+= .+.....++..+.|.++.||.+++...-.. .++. +
T Consensus 260 vip~l~~eL~se~~~~--Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEV--RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred HHHHHHHHHhcchHHH--HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhH
Confidence 5677777777777765 999999999872 234556666777899999999999887652 3332 2
Q ss_pred HHHHHHHH-hccCCCHHHHHHHHHHHhccC--------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 239 SAALSDVL-RNVNEHPMVRHEAAEALGSIA--------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 239 ~~~L~~~l-~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
...+..+- .+. |+.+|....-.+.... .+..+..+.+-+.|.-..||..|+..|..+-.+
T Consensus 338 ~~~~~~l~~~~~--D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~ 406 (1266)
T KOG1525|consen 338 STILLALRERDL--DEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN 406 (1266)
T ss_pred HHHHHHHHhhcC--ChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 22222222 343 7777775544433332 112566666678899999999999999988663
No 205
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.14 E-value=6.6 Score=26.26 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 99 RHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 99 R~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+.|+.++++++. .+.++.+.+...+.+...+|-.+..+|+.+.
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis 57 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLIS 57 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 4678888888773 4678889997778899999999999999887
No 206
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.90 E-value=27 Score=26.85 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=14.2
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHh
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLG 231 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~ 231 (318)
.+++..|.+-+.+.++.+...|+..|.
T Consensus 36 k~a~ral~KRl~~~n~~v~l~AL~LLe 62 (144)
T cd03568 36 KDCLKAIMKRLNHKDPNVQLRALTLLD 62 (144)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 345555555555555555555555544
No 207
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=76.12 E-value=45 Score=29.10 Aligned_cols=60 Identities=15% Similarity=0.118 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhh
Q 021051 219 SALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFA 279 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 279 (318)
++.+|..+.......++.+....+.+.....+ ++..|..++.+|+...++..+..+.+.+
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~-~~~~k~~~l~aLa~~~d~~~~~~~l~~~ 227 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKNST-SPEEKRRLLSALACSPDPELLKRLLDLL 227 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHTTS-THHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhccC-CHHHHHHHHHhhhccCCHHHHHHHHHHH
Confidence 78899988888888888888889999888653 7999999999999999998877777743
No 208
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=76.07 E-value=15 Score=31.54 Aligned_cols=103 Identities=17% Similarity=0.222 Sum_probs=62.4
Q ss_pred HhCCC-hhHHHHHHHHhC--CCCHHHHHHHHHHHhccCCcc-hHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hhHHH
Q 021051 200 RNHGG-DEAVSAIIDSLG--ATSALLKHEVAYVLGQLQNKA-ASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QSIGL 274 (318)
Q Consensus 200 ~~~~~-~~~~~~l~~~l~--d~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~ 274 (318)
.+.|. ..++..+.+.+. ..++.++...+..+...++.. +...|.......+.++.+...-+.+...+|.. +++..
T Consensus 157 ~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~ 236 (280)
T PF13429_consen 157 EQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY 236 (280)
T ss_dssp HHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc
Confidence 34444 567777777773 336888888888887777643 33444444443233667777777777777754 58899
Q ss_pred HHHhhc--CCCHHHHHHHHHHHHhchhhhc
Q 021051 275 LKEFAK--DPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 275 L~~~l~--~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.+.+. ..++.+......+|...+....
T Consensus 237 ~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 237 LEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 888765 4678888888888888877654
No 209
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=75.92 E-value=3.8 Score=40.95 Aligned_cols=79 Identities=23% Similarity=0.310 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHH
Q 021051 62 SNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQE 129 (318)
Q Consensus 62 ~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~ 129 (318)
.+.+|..+.-+|+++.- ...+|.|++-|+- .++..+|.+.+-+++.++. ..++|.+.. -+.||++.
T Consensus 944 ~~~vra~~vvTlakmcLah~~LaKr~~P~lvkeLe~-~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~-~L~Dp~~i 1021 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHDRLAKRLMPMLVKELEY-NTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAA-SLCDPSVI 1021 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh-hhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHH-HhcCchHH
Confidence 45678888888888652 2478888888883 5778899988888887763 457898888 45899999
Q ss_pred HHHHHHHHHHHHH
Q 021051 130 VRETCELALERIE 142 (318)
Q Consensus 130 vr~~a~~aL~~~~ 142 (318)
||+.++.-|.++-
T Consensus 1022 VRrqt~ilL~rLL 1034 (1529)
T KOG0413|consen 1022 VRRQTIILLARLL 1034 (1529)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999875
No 210
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=75.89 E-value=40 Score=27.11 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=45.2
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CCh-------hHHHHHHHHhCCCCHHHHHHHHHHHhcc
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNH----GGD-------EAVSAIIDSLGATSALLKHEVAYVLGQL 233 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~~-------~~~~~l~~~l~d~~~~vr~~a~~~L~~~ 233 (318)
...++.+++.+.+.+.++ |..|...+..+ +.. +.+..|..+|+..++.+...++.+|-.+
T Consensus 37 ~~~Lpif~dGL~Et~~Py--~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPY--RFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred hhHHHHHHhhhhccCccH--HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 346889999999998887 77666555443 332 4555566788999999999999999877
No 211
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=75.82 E-value=30 Score=26.05 Aligned_cols=82 Identities=18% Similarity=0.153 Sum_probs=48.7
Q ss_pred CCCHHHHHHHHHHHhcc--CCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC------------ChhhHHHHHHhhcC-
Q 021051 217 ATSALLKHEVAYVLGQL--QNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA------------DDQSIGLLKEFAKD- 281 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~--~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~- 281 (318)
++||..-.+.+..+..- +..+++..|...+.+. +|.++..|+..|..+- +.+-+..|.+++..
T Consensus 15 ~~D~~~il~icd~I~~~~~~~k~a~raL~krl~~~--n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~ 92 (133)
T cd03561 15 EPDWALNLELCDLINLKPNGPKEAARAIRKKIKYG--NPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNS 92 (133)
T ss_pred CccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCC
Confidence 45666666666666544 2345666666666665 6666666666555431 12334446665543
Q ss_pred --CCHHHHHHHHHHHHhchhh
Q 021051 282 --PEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 282 --~~~~vr~~a~~aL~~l~~~ 300 (318)
.++.||..+..-+..+...
T Consensus 93 ~~~~~~Vk~kil~ll~~W~~~ 113 (133)
T cd03561 93 PKYDPKVREKALELILAWSES 113 (133)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 4678888888887777654
No 212
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=74.91 E-value=36 Score=26.10 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=33.0
Q ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 29 TQPISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQ 75 (318)
Q Consensus 29 ~~~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~ 75 (318)
++||..-...+..+..- +..+++..|.+.+++.++.++..|+..|..
T Consensus 19 ~~dw~~ileicD~In~~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~ 67 (142)
T cd03569 19 EPDLASILEICDMIRSKDVQPKYAMRALKKRLLSKNPNVQLYALLLLES 67 (142)
T ss_pred ccCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 34576666666666542 334678888888888999998888877643
No 213
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.80 E-value=20 Score=37.68 Aligned_cols=124 Identities=15% Similarity=0.108 Sum_probs=77.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC--CCCcHH
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ--DAEAIP 83 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~~~~ 83 (318)
..++.|..-|.+.+. .+|..|+..+|.+.. +..-...+..+.|.++.||..++.....+= .+....
T Consensus 259 ~vip~l~~eL~se~~--~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 259 AVIPQLEFELLSEQE--EVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHhcchH--HHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 366777777777765 999999999998754 233444445568999999999988765432 111111
Q ss_pred --HHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 84 --ALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 84 --~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+...+...+.|+.+|..-.-.+..... +..+..+.+ .+.|+.+.||..|+..|..+=
T Consensus 337 ~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~ll~~~~e-R~rDKk~~VR~~Am~~LaqlY 404 (1266)
T KOG1525|consen 337 ASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPLLLKLVAE-RLRDKKIKVRKQAMNGLAQLY 404 (1266)
T ss_pred HHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHH
Confidence 1122222225666666544433332221 114455555 447999999999999998874
No 214
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.78 E-value=75 Score=29.76 Aligned_cols=56 Identities=16% Similarity=0.040 Sum_probs=37.3
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCC-HHHHHHHHH
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSS-NLLAHEAAF 71 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~-~~vr~~a~~ 71 (318)
...+++.|.++....++ ..|...+..+-++.- ...+|.+..+++++. ..+-...++
T Consensus 343 ~~~iveKL~klfp~~h~--dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lY 409 (791)
T KOG1222|consen 343 QNGIVEKLLKLFPIQHP--DLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLY 409 (791)
T ss_pred hccHHHHHHHhcCCCCH--HHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcccchhhhhhhh
Confidence 34578889999888887 778888877755432 356788888886553 334333333
No 215
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=73.42 E-value=32 Score=34.45 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=72.9
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC
Q 021051 124 SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG 203 (318)
Q Consensus 124 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~ 203 (318)
.++|+.+|..|...+..+. . .+.....|.+...+.+.+...|+.|+-.|.++-
T Consensus 14 ls~d~~vr~~AE~~l~qle-~--------------------------~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yi 66 (1005)
T KOG2274|consen 14 LSADQNVRSQAETQLKQLE-L--------------------------TEGFGVALAEVAANKDASLPLRQIALVLLKRYI 66 (1005)
T ss_pred cCCChhHHHHHHHHHhccc-c--------------------------chHHHHHHHHHHhCcccCchHHHHHHHHHHHHH
Confidence 4788899999888888665 0 122466777777777777777888886666552
Q ss_pred ChhHHHHHHHHhCCCC---HHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-------hhhHH
Q 021051 204 GDEAVSAIIDSLGATS---ALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-------DQSIG 273 (318)
Q Consensus 204 ~~~~~~~l~~~l~d~~---~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-------~~~~~ 273 (318)
.....+ ..+...++. ..++.. ....|.+.+.++ +..+|.++..++..|.. ++.++
T Consensus 67 e~hW~~-~~E~fr~~~~~~e~~K~~------------IRe~Ll~~l~~s--n~ki~~~vay~is~Ia~~D~Pd~WpElv~ 131 (1005)
T KOG2274|consen 67 EKHWSP-NFEAFRYPLIVSEEVKAL------------IREQLLNLLDDS--NSKIRSAVAYAISSIAAVDYPDEWPELVP 131 (1005)
T ss_pred HHhCCC-hHhhccCCCcccHHHHHH------------HHHHHHhhhhcc--ccccchHHHHHHHHHHhccCchhhHHHHH
Confidence 211111 111222221 111111 223344444433 55566655555555531 34566
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 274 LLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 274 ~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
.+.+++.+.+..--..|...|..+-+.-
T Consensus 132 ~i~~~l~~~n~n~i~~am~vL~el~~ev 159 (1005)
T KOG2274|consen 132 FILKLLSSGNENSIHGAMRVLAELSDEV 159 (1005)
T ss_pred HHHHHHhccchhhhhhHHHHHHHHHHHH
Confidence 6666666555444455555555554443
No 216
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=73.18 E-value=1.1e+02 Score=31.08 Aligned_cols=82 Identities=13% Similarity=0.104 Sum_probs=55.0
Q ss_pred HHhCCChhHHHHHHHHhCC------CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhH
Q 021051 199 LRNHGGDEAVSAIIDSLGA------TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSI 272 (318)
Q Consensus 199 L~~~~~~~~~~~l~~~l~d------~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~ 272 (318)
+...+++.++..+...+.. -++++|..++..+..-+..... .|.+.+...+ ++.-|..++.+|+...++..+
T Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~~~~~~~-~l~~~~~~~~-~~~~~~~~l~al~~~~~~~~~ 719 (831)
T TIGR02412 642 ALTATDPDSLRRLLSLLDGKIKGLALDPDLRWRIIARLAALGFIDAD-DIAAELERDN-TASGEEHAAAARAARPDAAAK 719 (831)
T ss_pred HHhcCCHHHHHHHHHHHhCCCCCcccCHhHHHHHHHHHHhcCCCCHH-HHHHHHhcCC-CHHHHHHHHHHhccCCCHHHH
Confidence 4555667677666666543 2778888888887775544433 3666554432 777888999999999888877
Q ss_pred H-HHHHhhcCC
Q 021051 273 G-LLKEFAKDP 282 (318)
Q Consensus 273 ~-~L~~~l~~~ 282 (318)
. .+...+.++
T Consensus 720 ~~~~~~~~~~~ 730 (831)
T TIGR02412 720 REAWQKLVTTD 730 (831)
T ss_pred HHHHHHHhCCC
Confidence 7 455555543
No 217
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=72.95 E-value=2.9 Score=24.50 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=12.7
Q ss_pred ChHHHHHHhccCCCHHHHHHHHH
Q 021051 49 GPRDALIRATKDSSNLLAHEAAF 71 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~ 71 (318)
.....+.+.+.|+++.||.+|+.
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~ 40 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVD 40 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHH
Confidence 34455555555666666665554
No 218
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=72.75 E-value=1.1e+02 Score=30.64 Aligned_cols=129 Identities=15% Similarity=0.119 Sum_probs=74.0
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-hhHHHHHHHHh--CCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccC
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGG-DEAVSAIIDSL--GATSALLKHEVAYVLGQLQNKAASAALSDVLRNVN 250 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-~~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~ 250 (318)
+...+.+.+....................|. ..++..+.+++ ..+++.+...........++++++..+...+...+
T Consensus 755 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 755 AVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCC
Confidence 3444445544333333234444444444444 34555555544 23355556666666666666667777777776544
Q ss_pred CCHHHHHHHHHHHhccCC-hhhHHHHHHhhcC--CCHHHHHHHHHHHHhchhhhc
Q 021051 251 EHPMVRHEAAEALGSIAD-DQSIGLLKEFAKD--PEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 251 ~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~--~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+++.+.......+...|. ++++..+.+++.. .++.++.....++...+....
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Confidence 466666555555666664 3577878776642 467777777777776655543
No 219
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=72.66 E-value=40 Score=25.72 Aligned_cols=45 Identities=9% Similarity=-0.115 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 30 QPISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALG 74 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~ 74 (318)
+||..-...+-.+..-.. .+++..|.+.++++++.+...|+..|.
T Consensus 17 ~dw~~ileicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe 63 (139)
T cd03567 17 EDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLE 63 (139)
T ss_pred CCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 356666666666654322 356777888888888888888877664
No 220
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=70.79 E-value=21 Score=32.25 Aligned_cols=118 Identities=25% Similarity=0.299 Sum_probs=68.4
Q ss_pred HHHHHHHcCCCcChHHHHHHHHHHHhCCCh---hHHHH----HHHHhC------CCCHHHHHHHHHHHhccCCc------
Q 021051 176 DMLREVLLGEEKGMYERYAALFALRNHGGD---EAVSA----IIDSLG------ATSALLKHEVAYVLGQLQNK------ 236 (318)
Q Consensus 176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~---~~~~~----l~~~l~------d~~~~vr~~a~~~L~~~~~~------ 236 (318)
+.+.+-+...+ ....|.+|...+..+... ...+. +...+. ..+|.-+-.|+..++.+...
T Consensus 213 EYIrrd~e~sd-~~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSD-SDTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHSCSS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHhhccccc-cCCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 34444443322 233688888888766432 22222 223332 35677777787777765321
Q ss_pred ---------chHHHHHH----HHh-ccCCCHHHHHHHHHHHhccCC-------hhhHHHHHHhhcCCCHHHHHHHHHHH
Q 021051 237 ---------AASAALSD----VLR-NVNEHPMVRHEAAEALGSIAD-------DQSIGLLKEFAKDPEPIVSQSCEVAL 294 (318)
Q Consensus 237 ---------~~~~~L~~----~l~-~~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~aL 294 (318)
+..+++.+ -+. +.+..|-+|..|++-+..+.+ ...++.+..++.+++..|+..|+.++
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 11222222 222 334479999999999998874 24688888999999999998888764
No 221
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=70.43 E-value=90 Score=28.83 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=53.6
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhc---cCCCHHHHHHHHHHHhccCC----
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAASAALSDVLRN---VNEHPMVRHEAAEALGSIAD---- 268 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~---~~~~~~vr~~a~~aL~~~~~---- 268 (318)
..+..+...+.+++........-++|.+.. .+.+..|+..+.. .+.|..++++++-||.++--
T Consensus 315 ~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n 394 (604)
T KOG4500|consen 315 QFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN 394 (604)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc
Confidence 456666667777788888888888887753 3345566666532 22356677788888877642
Q ss_pred ------hhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051 269 ------DQSIGLLKEFAKDPEPIVSQSCEVALSM 296 (318)
Q Consensus 269 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 296 (318)
.+..+.+..+++...|.|.....-.+.+
T Consensus 395 ka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM 428 (604)
T KOG4500|consen 395 KAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRM 428 (604)
T ss_pred hhhccccchHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 2334455555554444444433434333
No 222
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.35 E-value=1.4e+02 Score=31.09 Aligned_cols=83 Identities=17% Similarity=0.079 Sum_probs=43.2
Q ss_pred cCCCHHHHHHHHHHHhccCCC--------CcHHHHHHhhhc--CCCCHHHHHHHHHHHHhc---CC-------CCcHHHH
Q 021051 59 KDSSNLLAHEAAFALGQMQDA--------EAIPALEAVLND--FSLHPIVRHEAAEALGAI---GL-------ESNIPLL 118 (318)
Q Consensus 59 ~d~~~~vr~~a~~aL~~~~~~--------~~~~~L~~~l~~--~~~~~~vR~~a~~~L~~~---~~-------~~~~~~L 118 (318)
++.+..+|..+.+.|..+... +-+..+.+.+.+ ++.....|...+.+|..+ .+ +..++.+
T Consensus 664 ~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~Ev 743 (1176)
T KOG1248|consen 664 NSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEV 743 (1176)
T ss_pred ccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444777888887777665432 122233333321 134445555555555433 22 1223333
Q ss_pred HhhhccCCCHHHHHHHHHHHHHHH
Q 021051 119 KNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 119 ~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+= ..++-+..-|+.+...|..++
T Consensus 744 IL-~~Ke~n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 744 IL-SLKEVNVKARRNAFALLVFIG 766 (1176)
T ss_pred HH-hcccccHHHHhhHHHHHHHHH
Confidence 33 226777777777777777666
No 223
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.03 E-value=1.3e+02 Score=30.64 Aligned_cols=61 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred hHHHHHHhhc------CCCCCHHHHHHHHHHHhccCC----CC---------hHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 17 MEKFLCDRLV------DPTQPISERFRALFSLRNLKG----PG---------PRDALIRATKDSSNLLAHEAAFALGQMQ 77 (318)
Q Consensus 17 ~~~~L~~~L~------~~~~~~~~r~~A~~~l~~~~~----~~---------~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 77 (318)
.++.+...|. .++.|.....-|++.++.+.+ +. .++.+...++++...+|..|+|.++.++
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~ 490 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFS 490 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHH
Confidence 4444455555 333333444446666665533 11 2334444456666666666666666655
No 224
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.01 E-value=76 Score=27.83 Aligned_cols=88 Identities=20% Similarity=0.105 Sum_probs=58.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhcc-CC---------CChHHHHHHhccCCCHHHHHHHHHHHhccCCCC------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNL-KG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQDAE------ 80 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------ 80 (318)
-...+.++|.+.+| .+|..|+..+-.+ +. ...++.|.+++++.++ -..|+.+|+++..+.
T Consensus 4 ~l~elv~ll~~~sP--~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~l 79 (353)
T KOG2973|consen 4 ELVELVELLHSLSP--PVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKL 79 (353)
T ss_pred HHHHHHHHhccCCh--HHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHH
Confidence 35678899999998 8999999776443 22 4678888888888776 556666776665432
Q ss_pred ---cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 021051 81 ---AIPALEAVLNDFSLHPIVRHEAAEALGAIG 110 (318)
Q Consensus 81 ---~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~ 110 (318)
.+..+...+. ++.+..-..++..|+++.
T Consensus 80 l~~~~k~l~~~~~--~p~~~lad~~cmlL~NLs 110 (353)
T KOG2973|consen 80 LQDLLKVLMDMLT--DPQSPLADLICMLLSNLS 110 (353)
T ss_pred HHHHHHHHHHHhc--CcccchHHHHHHHHHHhc
Confidence 3444455556 554444445555666654
No 225
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=69.54 E-value=7.3 Score=22.81 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=15.3
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHH
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYV 229 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~ 229 (318)
.....+...+.|+++.||.+|+..
T Consensus 18 ~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 18 DVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHH
Confidence 444555666677777777776654
No 226
>PRK04330 hypothetical protein; Provisional
Probab=69.30 E-value=35 Score=23.64 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhcCCC--HHHHHHHHHHHHhc
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAKDPE--PIVSQSCEVALSML 297 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~~~~--~~vr~~a~~aL~~l 297 (318)
+..|.+...|..-..++|++|-++...+.+ ..++..|.+..+|++ ...|......++.+
T Consensus 15 ~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPNmP~h~RT~IW~ivS~L 84 (88)
T PRK04330 15 IQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPNMPLHTRTLIWNIVSQL 84 (88)
T ss_pred HHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Confidence 344444444443334666666666666543 246777888888876 44454444444443
No 227
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=68.96 E-value=5.7 Score=31.15 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=12.2
Q ss_pred HHHHHHHhC-CCCHHHHHHHHHHHhccC
Q 021051 208 VSAIIDSLG-ATSALLKHEVAYVLGQLQ 234 (318)
Q Consensus 208 ~~~l~~~l~-d~~~~vr~~a~~~L~~~~ 234 (318)
++.+.++++ +.++.+|.++++.||-+|
T Consensus 12 L~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 12 LDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 334444442 223555555555555554
No 228
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=68.91 E-value=21 Score=21.15 Aligned_cols=41 Identities=20% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHHHHhccCChh-hHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051 256 RHEAAEALGSIADDQ-SIGLLKEFAKDPEPIVSQSCEVALSM 296 (318)
Q Consensus 256 r~~a~~aL~~~~~~~-~~~~L~~~l~~~~~~vr~~a~~aL~~ 296 (318)
|..-++++..+|+.+ +...|.+++...++..+.+|..-|.+
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLAQ 43 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 344566777777654 66667777777777777777666554
No 229
>TIGR02412 pepN_strep_liv aminopeptidase N, Streptomyces lividans type. This family is a subset of the members of the zinc metallopeptidase family M1 (pfam01433), with a single member characterized in Streptomyces lividans 66 and designated aminopeptidase N. The spectrum of activity may differ somewhat from the aminopeptidase N clade of E. coli and most other Proteobacteria, well separated phylogenetically within the M1 family. The M1 family also includes leukotriene A-4 hydrolase/aminopeptidase (with a bifunctional active site).
Probab=68.20 E-value=1.4e+02 Score=30.32 Aligned_cols=256 Identities=11% Similarity=0.005 Sum_probs=127.7
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHH---hccCC---CChHHHHHHhcc-CCCHHHHHHHHHHHh-ccC----CC
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSL---RNLKG---PGPRDALIRATK-DSSNLLAHEAAFALG-QMQ----DA 79 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l---~~~~~---~~~~~~L~~~l~-d~~~~vr~~a~~aL~-~~~----~~ 79 (318)
+.++...+.|.+.|.... +...|...+.-+ ...+. ...++.+...|. +.+..+-..++..++ .+. ..
T Consensus 528 ~yd~~~~~~l~~~l~~~~-~~~~R~~l~~d~~~~~~~g~~~~~~~l~l~~~~l~~E~~~~v~~~~~~~l~~~~~~~~~~~ 606 (831)
T TIGR02412 528 RLDPTSFDTVLAALSKLP-DPLSRAVVWASLWDSVRDGELSPDDYLSTVFAHVPSETDYAVVQQVLSQLLRAVAAQYAPI 606 (831)
T ss_pred ECCHHHHHHHHHHhhhCC-ChhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhCCH
Confidence 457778888888876442 126676555444 22222 345666666765 456666666655555 221 11
Q ss_pred Cc--------HHHHHHhhhcCCCCHHHHHHHHHH-HHhcCCCCcHHHHHhhhcc---C--CCHHHHHHHHHHHHHHHhhh
Q 021051 80 EA--------IPALEAVLNDFSLHPIVRHEAAEA-LGAIGLESNIPLLKNSLVS---D--PAQEVRETCELALERIEKLK 145 (318)
Q Consensus 80 ~~--------~~~L~~~l~~~~~~~~vR~~a~~~-L~~~~~~~~~~~L~~~l~~---d--~~~~vr~~a~~aL~~~~~~~ 145 (318)
.. ...+.......++....+...+.. ++..+++..+..+...+.. + -++.+|-.+..++.+.+
T Consensus 607 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~~--- 683 (831)
T TIGR02412 607 ADRPALLAVAALACRSLRRAMESGPDFQLRWLRALALTATDPDSLRRLLSLLDGKIKGLALDPDLRWRIIARLAALG--- 683 (831)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCCcccCHhHHHHHHHHHHhcC---
Confidence 11 122222222112222333333444 4555666667666663322 1 26778877777666433
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHH-HHHHHhCCCC--HHH
Q 021051 146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVS-AIIDSLGATS--ALL 222 (318)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~-~l~~~l~d~~--~~v 222 (318)
......|.+.+..++... .|..++.+++...++.... .+...+.++. ...
T Consensus 684 --------------------------~~~~~~l~~~~~~~~~~~-~~~~~l~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (831)
T TIGR02412 684 --------------------------FIDADDIAAELERDNTAS-GEEHAAAARAARPDAAAKREAWQKLVTTDALPNSK 736 (831)
T ss_pred --------------------------CCCHHHHHHHHhcCCCHH-HHHHHHHHhccCCCHHHHHHHHHHHhCCCCCCHHH
Confidence 123444666554443332 4888899999988877666 4555655542 222
Q ss_pred HHHHHHHHhcc-CCcchHHHHH-------HHHhccCCCHHHHHHHHHHHh--ccCChhhHHHHHHhhc---CCCHHHHHH
Q 021051 223 KHEVAYVLGQL-QNKAASAALS-------DVLRNVNEHPMVRHEAAEALG--SIADDQSIGLLKEFAK---DPEPIVSQS 289 (318)
Q Consensus 223 r~~a~~~L~~~-~~~~~~~~L~-------~~l~~~~~~~~vr~~a~~aL~--~~~~~~~~~~L~~~l~---~~~~~vr~~ 289 (318)
....+..+..- +..-+.+.+. +..... ...+.......+. ...+.+.+..+.++++ +..+.+++.
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 814 (831)
T TIGR02412 737 QRAIIEGFWQPEQALLLAAYAERYFANLADIWKRR--GPAIAQAISRGLFPATAVNYDTLATADKWLRSQADASPGLRRT 814 (831)
T ss_pred HHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHhcCCcccCCHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 22233333211 1111112222 222221 2333333333333 3345556677777774 345677777
Q ss_pred HHHHHHhchhh
Q 021051 290 CEVALSMLEYE 300 (318)
Q Consensus 290 a~~aL~~l~~~ 300 (318)
...++..+..-
T Consensus 815 l~~~~d~~~r~ 825 (831)
T TIGR02412 815 LLERRDAAERA 825 (831)
T ss_pred HHHHHhHHHHH
Confidence 77776665543
No 230
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=68.16 E-value=7.3 Score=28.08 Aligned_cols=43 Identities=12% Similarity=0.053 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhcc
Q 021051 207 AVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNV 249 (318)
Q Consensus 207 ~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~ 249 (318)
....|..+|+++++.||..|+..+-.+.+.++...|..+.+..
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~L~~~p~eA~~~Le~ia~~~ 90 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHTLRYAPEEARKVLEEIASSK 90 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTTTTT-HHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCChhHHHHHHHHHHHhCHHHHHHHHHHHHHcC
Confidence 3567888999999999999998888888888888888887764
No 231
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=68.11 E-value=38 Score=33.88 Aligned_cols=137 Identities=19% Similarity=0.102 Sum_probs=89.2
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh------H-HHHHHhcc---CCCHHHHHHHHHHHhccCCCC
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP------R-DALIRATK---DSSNLLAHEAAFALGQMQDAE 80 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~------~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~ 80 (318)
..++.+.+..|+++|+++.. ..+...+..|...-.|.. . ..|....+ .....-+..|...||.+...-
T Consensus 20 ~pl~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~ 97 (844)
T TIGR00117 20 LPLNANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY 97 (844)
T ss_pred CCCCHHHHHHHHHHhcCCCC--ccHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC
Confidence 34677899999999998865 566667777776655422 1 11222222 223456889999999998878
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMT 155 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l 155 (318)
.+..|+++|. .+|..+-..|..+|.+.- --+....... +.+. + ..-+..+.+.++-. |--+.+.+.+.+
T Consensus 98 ~~~~l~~~~~--~~~~~~a~~a~~~l~~~~~~~~~~~~~~~-~~~~-n-~~a~~v~~swa~ae-wf~~~~~~~~~i 167 (844)
T TIGR00117 98 NVHPLIDALD--SQDANIAPIAAKALSHTLLVFDNFYDVEE-KSKT-N-EYAKQVMQSWADAE-WFLNKPALAEKI 167 (844)
T ss_pred CHHHHHHHHh--CCCHHHHHHHHHHHhceEEEeechHHHHH-Hhhc-C-HHHHHHHHHHhhhh-hhhcCCCcchhe
Confidence 9999999999 789999999999998643 1122222333 2222 3 23344555555555 777777665555
No 232
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=68.02 E-value=91 Score=27.92 Aligned_cols=63 Identities=24% Similarity=0.276 Sum_probs=42.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC
Q 021051 125 DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204 (318)
Q Consensus 125 d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~ 204 (318)
+.++.+|..|+..|+.+. +..+.. +... ......++.+.+.++..+....+.|+..|..+|.
T Consensus 279 ~~h~~LRd~AA~ll~~i~-~~f~~~----------y~~l-------~~ri~~tl~k~l~d~~~~~~~~YGAi~GL~~lG~ 340 (343)
T cd08050 279 DNHWALRDYAARLLAQIC-RKFSTS----------YNTL-------QPRITRTLLKALLDPKKPLTTHYGAIVGLSALGP 340 (343)
T ss_pred chHHHHHHHHHHHHHHHH-HHcCCC----------CCcH-------HHHHHHHHHHHHcCCCCCcchhhHHHHHHHHhCc
Confidence 457899999999999887 221111 1111 1234567888888888877678899988888875
Q ss_pred h
Q 021051 205 D 205 (318)
Q Consensus 205 ~ 205 (318)
.
T Consensus 341 ~ 341 (343)
T cd08050 341 E 341 (343)
T ss_pred c
Confidence 3
No 233
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=67.76 E-value=1e+02 Score=28.29 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=46.3
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+.+..|+.+++..+ ||.+-.-|+.-+|.+- . -++-+.+.++++-+++.||.+|+.|+..+--+
T Consensus 366 ellkiL~~lLe~s~-Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 366 ELLKILIKLLETSN-DPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HHHHHHHHHHhcCC-CCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 57788888888653 5766666666666541 1 13566788899999999999999999887544
No 234
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=67.49 E-value=54 Score=25.11 Aligned_cols=29 Identities=17% Similarity=0.125 Sum_probs=15.3
Q ss_pred hhHHHHHHhhc-CCCHHHHHHHHHHHHhch
Q 021051 270 QSIGLLKEFAK-DPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 270 ~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~ 298 (318)
+.++.|.+++. ..++.|+..+...+..+.
T Consensus 84 ~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 113 (142)
T cd03569 84 EFMDELKDLIKTTKNEEVRQKILELIQAWA 113 (142)
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHH
Confidence 34444555444 345566666666555554
No 235
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=66.99 E-value=81 Score=26.99 Aligned_cols=122 Identities=15% Similarity=0.061 Sum_probs=71.3
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccC--CCHHHH---HHHHHHHhccCC---CCcH
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKD--SSNLLA---HEAAFALGQMQD---AEAI 82 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d--~~~~vr---~~a~~aL~~~~~---~~~~ 82 (318)
+.|...|.++++ .+|.+|+..|+..-. ...+..|...+.+ .|...- ..++.+|.++.. ..+.
T Consensus 2 ~~Lg~~Ltsed~--~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~ 79 (262)
T PF14500_consen 2 QSLGEYLTSEDP--IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV 79 (262)
T ss_pred cchhhhhCCCCH--HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH
Confidence 457788999887 999999888875422 2345555555522 122222 445555554442 1223
Q ss_pred HHHHHhhhc---CCCCHHHHHHHHHHHHhcC----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 83 PALEAVLND---FSLHPIVRHEAAEALGAIG----------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 83 ~~L~~~l~~---~~~~~~vR~~a~~~L~~~~----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..+..+.++ +.-....|..+...+..+- ..+.+..+.+....++||+--..+...+..+.
T Consensus 80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 333333331 1223566777776664331 13466667776778889988887777777665
No 236
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=66.13 E-value=22 Score=31.15 Aligned_cols=62 Identities=19% Similarity=0.046 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhcc
Q 021051 62 SNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVS 124 (318)
Q Consensus 62 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~ 124 (318)
++.+|..+.....+.+.......+.+...+ +.++..|..++.+|+...++..+..+...+.+
T Consensus 168 ~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~-~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l~ 229 (324)
T PF11838_consen 168 PPDLRWAVYCAGVRNGDEEEWDFLWELYKN-STSPEEKRRLLSALACSPDPELLKRLLDLLLS 229 (324)
T ss_dssp -HHHHHHHHHHHTTS--HHHHHHHHHHHHT-TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhhHhhHHHHHHHHhc-cCCHHHHHHHHHhhhccCCHHHHHHHHHHHcC
Confidence 667788877777777775667777777773 56778888888888887777766666664443
No 237
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.86 E-value=29 Score=30.31 Aligned_cols=56 Identities=18% Similarity=0.177 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhccC---C-------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQLQ---N-------KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~~---~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
......|.+.+|..+...+..+..+. . .+.+-.+++-+++. ...|-++|+.+++.+
T Consensus 91 ~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNl--RS~VsraA~~t~~di 156 (334)
T KOG2933|consen 91 KQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNL--RSAVSRAACMTLADI 156 (334)
T ss_pred HHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHH
Confidence 33444455555555555555444321 1 12333333344443 445555555555554
No 238
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=65.46 E-value=1.5e+02 Score=29.55 Aligned_cols=106 Identities=12% Similarity=0.078 Sum_probs=64.4
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhC--CCCHHHHHHHHHHHhccCC-cchHHHHHHHHhccC
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLG--ATSALLKHEVAYVLGQLQN-KAASAALSDVLRNVN 250 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~--d~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~~~~ 250 (318)
+...+.+.+....................+...++..+.+.+. ..++........++-..+. .++...+.+.+...+
T Consensus 789 A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 789 AIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3444444443322222234455555566666777777777653 2344443333344444444 468888888887655
Q ss_pred CCHHHHHHHHHHHhccCCh-hhHHHHHHhh
Q 021051 251 EHPMVRHEAAEALGSIADD-QSIGLLKEFA 279 (318)
Q Consensus 251 ~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l 279 (318)
.++.++...+.++...|.. ++...+.+++
T Consensus 869 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 869 EAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6899999999999998865 4677666665
No 239
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=65.43 E-value=15 Score=25.73 Aligned_cols=66 Identities=26% Similarity=0.287 Sum_probs=45.9
Q ss_pred CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC
Q 021051 125 DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG 204 (318)
Q Consensus 125 d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~ 204 (318)
+++..+|..|+..|+.+. ...+.. +... .......+.+.+.|++.+....+.|+..|..+|.
T Consensus 17 ~~h~~LRd~AA~lL~~I~-~~~~~~----------~~~L-------~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~lG~ 78 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQIC-RKFSSS----------YPTL-------QPRITRTLLKALLDPKKPLGTHYGAIVGLSALGP 78 (92)
T ss_pred cchHHHHHHHHHHHHHHH-HHhccc----------cchH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence 568899999999999887 111110 1111 1235678888888888888889999999999965
Q ss_pred hhHHH
Q 021051 205 DEAVS 209 (318)
Q Consensus 205 ~~~~~ 209 (318)
+ ++.
T Consensus 79 ~-~vr 82 (92)
T PF07571_consen 79 E-AVR 82 (92)
T ss_pred H-HHH
Confidence 4 443
No 240
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=65.42 E-value=42 Score=23.11 Aligned_cols=59 Identities=20% Similarity=0.278 Sum_probs=31.9
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCCh---------hhHHHHHHhhcCCC--HHHHHHHHHHHHh
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADD---------QSIGLLKEFAKDPE--PIVSQSCEVALSM 296 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~~~~--~~vr~~a~~aL~~ 296 (318)
+...|.+...|..-..++|++|-++...+.++ .++..|.+..+||+ ...|......++.
T Consensus 11 ~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsnDPNmP~h~RT~IW~i~S~ 80 (85)
T PF03685_consen 11 AIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISNDPNMPSHTRTLIWNIVSK 80 (85)
T ss_dssp HHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhcCCCCchHHHHHHHHHHHH
Confidence 34445555555433346777777666666532 36777888888876 4444444444443
No 241
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=64.22 E-value=1.2e+02 Score=27.91 Aligned_cols=162 Identities=20% Similarity=0.143 Sum_probs=98.2
Q ss_pred HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHH-cCCCcChHHHH
Q 021051 115 IPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVL-LGEEKGMYERY 193 (318)
Q Consensus 115 ~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l-~~~~~~~~~r~ 193 (318)
+..+.....+..++..|..+...++.+-+ +...+. . -...+..+...+ ...... .|.
T Consensus 191 l~~l~~~~~~~~~~~~~~~~~~~la~LvN-K~~~~~--------------~-----l~~~l~~~~~~~~~~~~~~--~~~ 248 (415)
T PF12460_consen 191 LQSLLNLALSSEDEFSRLAALQLLASLVN-KWPDDD--------------D-----LDEFLDSLLQSISSSEDSE--LRP 248 (415)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHc-CCCChh--------------h-----HHHHHHHHHhhhcccCCcc--hhH
Confidence 44555545566679999999999987761 100000 0 011223333333 122222 255
Q ss_pred HHHHHHHhC-------CCh---hHHHHHHHHhCCCCHHHHHHHHHHHhccC-C----------------------cchHH
Q 021051 194 AALFALRNH-------GGD---EAVSAIIDSLGATSALLKHEVAYVLGQLQ-N----------------------KAASA 240 (318)
Q Consensus 194 ~a~~~L~~~-------~~~---~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-~----------------------~~~~~ 240 (318)
.++..+..+ +++ +.+..+.+++.+ +.+...++++++-+- + ...+|
T Consensus 249 ~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p 326 (415)
T PF12460_consen 249 QALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLP 326 (415)
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHH
Confidence 555554333 333 445666666666 556667777776542 2 23478
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccC-----------ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 241 ALSDVLRNVNEHPMVRHEAAEALGSIA-----------DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 241 ~L~~~l~~~~~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.|++..++. +...|..-..||..+= -+..+|.|.+.+.-+++.++..+...|..+-....
T Consensus 327 ~L~~~~~~~--~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 327 KLLEGFKEA--DDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHhhc--ChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 888888876 4557777777776652 13578889999988999999999999998876653
No 242
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=64.04 E-value=1.1e+02 Score=27.61 Aligned_cols=37 Identities=16% Similarity=0.072 Sum_probs=19.0
Q ss_pred hhccccC-ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 021051 7 FTNAFKS-SPEMEKFLCDRLVDPTQPISERFRALFSLRN 44 (318)
Q Consensus 7 ~~~~~~~-~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~ 44 (318)
|+.++.+ .+.+.+.|.-++.+++ |...|+.|.+.|..
T Consensus 75 FSAPV~l~~~~s~~eL~~L~~~D~-D~FnRWdA~Q~L~~ 112 (367)
T PF11940_consen 75 FSAPVKLEYDYSDEELAFLAAHDS-DPFNRWDAAQTLAT 112 (367)
T ss_dssp G-SSSEEE----HHHHHHHHHH-S-SHHHHHHHHHHHHH
T ss_pred cccceEecCCCCHHHHHHHHHcCC-ChhHHHHHHHHHHH
Confidence 4445443 2345556655555333 23888888888755
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.01 E-value=99 Score=26.93 Aligned_cols=126 Identities=13% Similarity=0.093 Sum_probs=81.0
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC--CHHHHH--HHHHHHhccCCcchHHHHHHHHhcc
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGAT--SALLKH--EVAYVLGQLQNKAASAALSDVLRNV 249 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~--~~~vr~--~a~~~L~~~~~~~~~~~L~~~l~~~ 249 (318)
+.+.+-..+...+.....+..-..++-..|..+....+...+-.. +..... .-+..+.+.....-...|...+...
T Consensus 153 a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad 232 (304)
T COG3118 153 AAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD 232 (304)
T ss_pred HHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 344455555433332234666667777778777777777766322 222222 2366677766554455666666544
Q ss_pred CCCHHHHHHHHHHHhccCChh-hHHHHHHhhcC----CCHHHHHHHHHHHHhchh
Q 021051 250 NEHPMVRHEAAEALGSIADDQ-SIGLLKEFAKD----PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 250 ~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~~----~~~~vr~~a~~aL~~l~~ 299 (318)
++|.+.|..++..+--.|+.+ +++.|..+++. .+..+|+..+..+..++.
T Consensus 233 Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 233 PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 568999999999888887654 78888876542 578899999999888873
No 244
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=63.30 E-value=46 Score=25.09 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=39.3
Q ss_pred CCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhcc------------CChhhHHHHHHhhcCC-
Q 021051 218 TSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSI------------ADDQSIGLLKEFAKDP- 282 (318)
Q Consensus 218 ~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~~- 282 (318)
++|..-.+.+..+..-. ..+++..|.+.+.+. +|.+...|+..|..+ ++.+.++.|.+++.++
T Consensus 16 ~dw~~~l~icD~i~~~~~~~k~a~r~l~krl~~~--n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~ 93 (133)
T smart00288 16 EDWELILEICDLINSTPDGPKDAVRLLKKRLNNK--NPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKY 93 (133)
T ss_pred cCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCC
Confidence 34444444444443221 234455555555544 455555555444332 1223455566655542
Q ss_pred C-HHHHHHHHHHHHhchhh
Q 021051 283 E-PIVSQSCEVALSMLEYE 300 (318)
Q Consensus 283 ~-~~vr~~a~~aL~~l~~~ 300 (318)
. +.|+..+...+..+...
T Consensus 94 ~~~~Vk~kil~li~~W~~~ 112 (133)
T smart00288 94 PLPLVKKRILELIQEWADA 112 (133)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 2 33777776666666543
No 245
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=63.28 E-value=60 Score=32.70 Aligned_cols=128 Identities=20% Similarity=0.166 Sum_probs=70.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-cHHHHHhhhcc-CCCHHHHHHHHHHHHHHHh--hhccCccccccccCCCCcccCCCCC
Q 021051 93 SLHPIVRHEAAEALGAIGLES-NIPLLKNSLVS-DPAQEVRETCELALERIEK--LKASGSDGSSMTERSPFMSVDPAAP 168 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~~~~-~~~~L~~~l~~-d~~~~vr~~a~~aL~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~ 168 (318)
++|+.+|..|-..|..+.... ....|.....+ +..-..|+.+...|.++-. |.+.. +.++. |..
T Consensus 15 s~d~~vr~~AE~~l~qle~~~~f~~aL~~va~~~~~sl~lRQ~A~v~L~~yie~hW~~~~----E~fr~-------~~~- 82 (1005)
T KOG2274|consen 15 SADQNVRSQAETQLKQLELTEGFGVALAEVAANKDASLPLRQIALVLLKRYIEKHWSPNF----EAFRY-------PLI- 82 (1005)
T ss_pred CCChhHHHHHHHHHhccccchHHHHHHHHHHhCcccCchHHHHHHHHHHHHHHHhCCChH----hhccC-------CCc-
Confidence 577888888877777766433 34445553322 2345677777777776641 21111 11110 100
Q ss_pred CCCCc----cHHHHHHHHcCCCcChHHHHHHHHHHHhC-------CChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC
Q 021051 169 ASSCS----SVDMLREVLLGEEKGMYERYAALFALRNH-------GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN 235 (318)
Q Consensus 169 ~~~~~----~~~~L~~~l~~~~~~~~~r~~a~~~L~~~-------~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 235 (318)
..++ .-..|...+.+++..+ |..+.+++..+ +.++.++.+.+++.+.+..-...|..+|..+.+
T Consensus 83 -~~e~~K~~IRe~Ll~~l~~sn~ki--~~~vay~is~Ia~~D~Pd~WpElv~~i~~~l~~~n~n~i~~am~vL~el~~ 157 (1005)
T KOG2274|consen 83 -VSEEVKALIREQLLNLLDDSNSKI--RSAVAYAISSIAAVDYPDEWPELVPFILKLLSSGNENSIHGAMRVLAELSD 157 (1005)
T ss_pred -ccHHHHHHHHHHHHhhhhcccccc--chHHHHHHHHHHhccCchhhHHHHHHHHHHHhccchhhhhhHHHHHHHHHH
Confidence 0111 1234555555555543 66665555544 235777777788877777777777777776654
No 246
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=63.18 E-value=71 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=17.4
Q ss_pred CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 113 SNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..++.|...+.++.++.+|+.+++.||.+|
T Consensus 10 ~LL~~L~~iLk~e~s~~iR~E~lr~lGilG 39 (160)
T PF11865_consen 10 ELLDILLNILKTEQSQSIRREALRVLGILG 39 (160)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhcc
Confidence 344455554545555666666666666665
No 247
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=60.82 E-value=1.4e+02 Score=27.64 Aligned_cols=67 Identities=19% Similarity=0.112 Sum_probs=47.4
Q ss_pred cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--hh--------hHHHHHHhhc-----CCCHHHHHHHHHHHHhchhh
Q 021051 236 KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--DQ--------SIGLLKEFAK-----DPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 236 ~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~~--------~~~~L~~~l~-----~~~~~vr~~a~~aL~~l~~~ 300 (318)
++.++.+...+.+. |..+..++..++|++.. .. ....|..++. |++-.+..+++.||.++--+
T Consensus 314 p~~l~~~~sw~~S~--d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP 391 (604)
T KOG4500|consen 314 PQFLDFLESWFRSD--DSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP 391 (604)
T ss_pred cHHHHHHHHHhcCC--chhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence 44667777777765 88999999999999963 22 3344444331 35667778999999998777
Q ss_pred hcch
Q 021051 301 QLEK 304 (318)
Q Consensus 301 ~~~~ 304 (318)
-+.+
T Consensus 392 v~nk 395 (604)
T KOG4500|consen 392 VSNK 395 (604)
T ss_pred CCch
Confidence 6655
No 248
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.18 E-value=75 Score=27.86 Aligned_cols=111 Identities=15% Similarity=0.221 Sum_probs=66.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC---C----c---chHHHHHHHHhccC--CCHHHHHHH
Q 021051 192 RYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ---N----K---AASAALSDVLRNVN--EHPMVRHEA 259 (318)
Q Consensus 192 r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~---~----~---~~~~~L~~~l~~~~--~~~~vr~~a 259 (318)
|...+..+...........+.+.+..+|+.+...++..|+.+- + . +.++.+.+.+.+.. ++.+++..+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~a 170 (312)
T PF03224_consen 91 RVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIA 170 (312)
T ss_dssp SHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHH
T ss_pred HHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHH
Confidence 5556666655555445666667888889999988888888752 1 1 45666777766421 134566777
Q ss_pred HHHHhccC----------ChhhHHHHHHhh------c-CCCHHHHHHHHHHHHhchhhhc
Q 021051 260 AEALGSIA----------DDQSIGLLKEFA------K-DPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 260 ~~aL~~~~----------~~~~~~~L~~~l------~-~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.+|+.+- ..+.++.|...+ . ..+.++..+++..++.+.....
T Consensus 171 v~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~ 230 (312)
T PF03224_consen 171 VQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPE 230 (312)
T ss_dssp HHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHH
Confidence 77777763 345677777777 2 2457788888888887766644
No 249
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=60.16 E-value=1.2e+02 Score=27.17 Aligned_cols=15 Identities=40% Similarity=0.383 Sum_probs=6.9
Q ss_pred CHHHHHHHHHHHhcc
Q 021051 252 HPMVRHEAAEALGSI 266 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~ 266 (318)
+|.+|..|+..|+.+
T Consensus 281 h~~LRd~AA~ll~~i 295 (343)
T cd08050 281 HWALRDYAARLLAQI 295 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 250
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.75 E-value=49 Score=25.13 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHhccCC--cchHHHHHHHHhccCCCHHHHHHHHHHHhcc------------CChhhHHHHHHhhcC-CC
Q 021051 219 SALLKHEVAYVLGQLQN--KAASAALSDVLRNVNEHPMVRHEAAEALGSI------------ADDQSIGLLKEFAKD-PE 283 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~--~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~-~~ 283 (318)
||..-...+..+..-.. .+++..|.+.+.+. +|.+...|+..|..+ +..+.+..|.+++.+ ..
T Consensus 22 Dw~~~l~icD~i~~~~~~~kea~~~l~krl~~~--~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~ 99 (140)
T PF00790_consen 22 DWSLILEICDLINSSPDGAKEAARALRKRLKHG--NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKT 99 (140)
T ss_dssp -HHHHHHHHHHHHTSTTHHHHHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHcCCccHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 44444444444433311 23444455555543 455555544433332 223445555554443 22
Q ss_pred HH---HHHHHHHHHHhchhh
Q 021051 284 PI---VSQSCEVALSMLEYE 300 (318)
Q Consensus 284 ~~---vr~~a~~aL~~l~~~ 300 (318)
.. ||..+..-+..+...
T Consensus 100 ~~~~~Vk~k~l~ll~~W~~~ 119 (140)
T PF00790_consen 100 DPETPVKEKILELLQEWAEA 119 (140)
T ss_dssp HHHSHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHH
Confidence 22 666666666655444
No 251
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=58.41 E-value=2.2e+02 Score=29.15 Aligned_cols=124 Identities=15% Similarity=0.100 Sum_probs=59.3
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhC--CCCHHH--HHHHHHHHhccCCcchHHHHHHHHhcc
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLG--ATSALL--KHEVAYVLGQLQNKAASAALSDVLRNV 249 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~--d~~~~v--r~~a~~~L~~~~~~~~~~~L~~~l~~~ 249 (318)
....+.+...+.+ .+..|.+|+.+|.....+.....|..... ..++.| +.-++.+ ....+..++.+..++.++
T Consensus 690 ~~~~~~~~~~~a~-~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa--~~~~~~~~~~v~~l~~h~ 766 (863)
T TIGR02414 690 IRNLALEQFKSAD-NMTDRLAALSALVHFESDFRERALAAFYQKWKDDPLVMDKWFALQA--TSPRPDTLERVKALLQHP 766 (863)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHhcCCChhHHHHHHHHHHHHCCCchhHHHHHHHHh--CCCcccHHHHHHHHhcCC
Confidence 3444555554433 34468888888887655433333333221 112222 3344444 233455667777777654
Q ss_pred C---CCHHHHHHHHHHHhccC-------ChhhHHHHHH---hhcCCCHHHHHHHHHHHHhchhh
Q 021051 250 N---EHPMVRHEAAEALGSIA-------DDQSIGLLKE---FAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 250 ~---~~~~vr~~a~~aL~~~~-------~~~~~~~L~~---~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
. .+|+--++.+-+.+.-. +-..-.+|.+ .++.-||+|....+.++.+++.-
T Consensus 767 ~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~ 830 (863)
T TIGR02414 767 AFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKL 830 (863)
T ss_pred CCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcC
Confidence 2 24544455555553111 1112233333 23445666666666666665544
No 252
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=57.41 E-value=31 Score=27.75 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCC-----hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIAD-----DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.+.....++ ++-+|+.++..+..... +..++.+...+.|++..|+.++.++|..+.....
T Consensus 108 ~~~~~w~~s~--~~~~rR~~~~~~~~~~~~~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~ 173 (197)
T cd06561 108 DLLEEWAKSE--NEWVRRAAIVLLLRLIKKETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDP 173 (197)
T ss_pred HHHHHHHhCC--cHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCH
Confidence 4455555544 56666666655555321 2244444455566667777777777776655533
No 253
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=56.94 E-value=1e+02 Score=24.78 Aligned_cols=38 Identities=34% Similarity=0.398 Sum_probs=24.8
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHh
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKN 120 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~ 120 (318)
..+.|...+.. |+++.+|..|+.+|..+=+. ..+.|..
T Consensus 40 ~~~sLlt~il~-Dp~~kvR~aA~~~l~~lL~g-sk~~L~~ 77 (182)
T PF13251_consen 40 ATPSLLTCILK-DPSPKVRAAAASALAALLEG-SKPFLAQ 77 (182)
T ss_pred CCcchhHHHHc-CCchhHHHHHHHHHHHHHHc-cHHHHHH
Confidence 34445555552 89999999999999876432 3444443
No 254
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=56.55 E-value=62 Score=26.76 Aligned_cols=81 Identities=11% Similarity=-0.014 Sum_probs=42.1
Q ss_pred CCHHHHHHHHHHHhccC-CcchHHHHHHHHhccCCCHHHHHHHHH-HHhccCC----hhhHHHHHHhhcCCCHHHHHHHH
Q 021051 218 TSALLKHEVAYVLGQLQ-NKAASAALSDVLRNVNEHPMVRHEAAE-ALGSIAD----DQSIGLLKEFAKDPEPIVSQSCE 291 (318)
Q Consensus 218 ~~~~vr~~a~~~L~~~~-~~~~~~~L~~~l~~~~~~~~vr~~a~~-aL~~~~~----~~~~~~L~~~l~~~~~~vr~~a~ 291 (318)
++|.+.-..+.....+. .++.++......++. +..+|+.++- ++..... .+..+.+...+.|.+..|+.+.-
T Consensus 98 nnW~vvD~la~~~V~~~~~~~li~~~~a~~~~~--~~w~rraaiv~~l~~~k~~~~~~~if~i~E~~l~d~e~fV~KAig 175 (222)
T COG4912 98 NNWAVVDTLANHFVGIPLWPDLIEEWAADAEED--NRWERRAAIVHQLVYKKKTLDLLEIFEIIELLLGDKEFFVQKAIG 175 (222)
T ss_pred ccHHHHHHHHHHhhccccCHHHHHHHHhccccc--hHHHHHHHHHHHHHHhcCccchhHHHHHHHHHccChHHHHHHHHH
Confidence 34555555555444422 233333332222222 4444444443 4443332 12455555667777888888888
Q ss_pred HHHHhchhh
Q 021051 292 VALSMLEYE 300 (318)
Q Consensus 292 ~aL~~l~~~ 300 (318)
|+|.+++.+
T Consensus 176 WaLrq~~k~ 184 (222)
T COG4912 176 WALRQIGKH 184 (222)
T ss_pred HHHHHHHhh
Confidence 888888774
No 255
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=55.79 E-value=75 Score=31.93 Aligned_cols=91 Identities=23% Similarity=0.202 Sum_probs=61.7
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHH
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAA 241 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~ 241 (318)
.+....|+++|+++.... +...+..|.+- |.+++. ..|.+..+ ....-.+..|+..||.|.....++.
T Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~pgvd~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~~ 101 (844)
T TIGR00117 24 ANQMAALVELLKNPPAGE--EEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGYNVHP 101 (844)
T ss_pred HHHHHHHHHHhcCCCCcc--HHHHHHHHHhCCCCCCChHHHHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCCCHHH
Confidence 356778888998775543 55566666654 222221 12222221 2233446789999999988888999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
|++++.+. |..+-..|+++|...
T Consensus 102 l~~~~~~~--~~~~a~~a~~~l~~~ 124 (844)
T TIGR00117 102 LIDALDSQ--DANIAPIAAKALSHT 124 (844)
T ss_pred HHHHHhCC--CHHHHHHHHHHHhce
Confidence 99999875 788999999999875
No 256
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.72 E-value=1.5e+02 Score=26.46 Aligned_cols=255 Identities=13% Similarity=0.062 Sum_probs=136.4
Q ss_pred HHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhccC-------CCCcHHHHHHhhhcCCCCHHHHHHHH
Q 021051 33 SERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQ-------DAEAIPALEAVLNDFSLHPIVRHEAA 103 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-------~~~~~~~L~~~l~~~~~~~~vR~~a~ 103 (318)
-..-.|.+.+..-.. +..+..+. +-.+++..+-..++.+|...- +......++.+|....++..+--..+
T Consensus 90 ck~~~A~r~la~~~ga~~~~it~~~-la~~~~~~~l~ksL~al~~lt~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~ 168 (461)
T KOG4199|consen 90 CKKSLAHRVLAGKNGAHDALITLLE-LAESPNESVLKKSLEAINSLTHKQPDLFDAEAMAVVLKLLALKVESEEVTLLTL 168 (461)
T ss_pred HhhhHHHHHHhccCCCcchhhhHHH-HhhCCchhHHHHHHHHHHHhhcCCcchhccccHHHHHHHHhcccchHHHHHHHH
Confidence 456667777744332 23333333 345667777777777776543 33567788888884445555544444
Q ss_pred HHHHh--cC---------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCC-----CC
Q 021051 104 EALGA--IG---------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDP-----AA 167 (318)
Q Consensus 104 ~~L~~--~~---------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~ 167 (318)
+.+.. ++ .....+.+.+.+.......+.+...+++.-+- -++++...+. +.
T Consensus 169 ~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~-------------~dDDiRV~fg~ah~hAr 235 (461)
T KOG4199|consen 169 QWLQKACIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALL-------------TDDDIRVVFGQAHGHAR 235 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhc-------------CCCceeeecchhhHHHH
Confidence 44432 11 23466777765655555555566666666443 0111111110 00
Q ss_pred CCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----------CChhHHHHHHHHhCC-CCHHHH---HHHHHHHhcc
Q 021051 168 PASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----------GGDEAVSAIIDSLGA-TSALLK---HEVAYVLGQL 233 (318)
Q Consensus 168 ~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----------~~~~~~~~l~~~l~d-~~~~vr---~~a~~~L~~~ 233 (318)
.+..+..+..|++.+.-.-.+. .-..+.-+|+.+ .....+..+..++.| .+...| .+++..|..+
T Consensus 236 ~ia~e~~l~~L~Eal~A~~dp~-~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLral 314 (461)
T KOG4199|consen 236 TIAKEGILTALTEALQAGIDPD-SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRAL 314 (461)
T ss_pred HHHHhhhHHHHHHHHHccCCcc-HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHH
Confidence 0112234556666664322221 122233333322 123456778888877 344444 5566666665
Q ss_pred CC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc--CCh---------hhHHHHHHhhcC-C-CHHHHHHH
Q 021051 234 QN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSI--ADD---------QSIGLLKEFAKD-P-EPIVSQSC 290 (318)
Q Consensus 234 ~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~--~~~---------~~~~~L~~~l~~-~-~~~vr~~a 290 (318)
.. ....+.|+.++..-.++|.|-.+++-++..+ +.| ++....++.++- | ...|.+.+
T Consensus 315 AG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrna 394 (461)
T KOG4199|consen 315 AGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNA 394 (461)
T ss_pred hCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHH
Confidence 43 3456777777754445888887776666554 322 233445555543 3 47788999
Q ss_pred HHHHHhchhhhc
Q 021051 291 EVALSMLEYEQL 302 (318)
Q Consensus 291 ~~aL~~l~~~~~ 302 (318)
++.+.++--...
T Consensus 395 c~~IRNiv~rs~ 406 (461)
T KOG4199|consen 395 CNMIRNIVVRSA 406 (461)
T ss_pred HHHHHHHHHhhh
Confidence 999988866543
No 257
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=55.64 E-value=1.1e+02 Score=29.02 Aligned_cols=53 Identities=17% Similarity=0.161 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051 217 ATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~ 269 (318)
|..|.+|--|+..+..+.. +.....+.+.+.|...++...+.++..|..+|..
T Consensus 309 dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YGai~gL~~lg~~ 371 (576)
T KOG2549|consen 309 DNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYGAIAGLSELGHE 371 (576)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhhHHHHHHHhhhh
Confidence 5678899888888876542 3456677777777656788999999999998864
No 258
>COG4912 Predicted DNA alkylation repair enzyme [DNA replication, recombination, and repair]
Probab=55.02 E-value=28 Score=28.73 Aligned_cols=19 Identities=26% Similarity=0.188 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHHHHhcCC
Q 021051 93 SLHPIVRHEAAEALGAIGL 111 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~~ 111 (318)
++...|+.+.-.+|..++.
T Consensus 165 d~e~fV~KAigWaLrq~~k 183 (222)
T COG4912 165 DKEFFVQKAIGWALRQIGK 183 (222)
T ss_pred ChHHHHHHHHHHHHHHHHh
Confidence 5556666555555555553
No 259
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=53.92 E-value=30 Score=26.50 Aligned_cols=71 Identities=13% Similarity=0.078 Sum_probs=44.4
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchH---HHHHHHHhccCCCHHHHHHHHHHHhccC--------ChhhHHH
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS---AALSDVLRNVNEHPMVRHEAAEALGSIA--------DDQSIGL 274 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~---~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~ 274 (318)
+.-..+..+|.++++.++..|+.++..++++... +.|..++.+ ...|.+...-...-+ .+..+|.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~~~l~pY~d~L~~Lldd----~~frdeL~~f~~~~~~~~I~~ehR~~l~pv 92 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKDPYLTPYKDNLENLLDD----KTFRDELTTFNLSDESSVIEEEHRPELMPV 92 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcHHHHhHHHHHHHHcCc----chHHHHHHhhcccCCcCCCCHHHHhHHHHH
Confidence 4446677788999999999999999999986543 345555543 345554443332222 1345666
Q ss_pred HHHhhc
Q 021051 275 LKEFAK 280 (318)
Q Consensus 275 L~~~l~ 280 (318)
+...+-
T Consensus 93 vlRILy 98 (141)
T PF07539_consen 93 VLRILY 98 (141)
T ss_pred HHHHHH
Confidence 666543
No 260
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=53.10 E-value=1e+02 Score=24.16 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=13.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 272 IGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 272 ~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
++.+.+++++ ..+...+..+|..+-.
T Consensus 118 i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 118 IQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 4444454443 4445566666665533
No 261
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=52.95 E-value=1e+02 Score=23.54 Aligned_cols=80 Identities=9% Similarity=-0.032 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhcc------------CChhhHHHHHHhhcC-
Q 021051 217 ATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSI------------ADDQSIGLLKEFAKD- 281 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~- 281 (318)
.++|..-.+.+..+..-. ..+++..|...+.+. ++.+...|+..|... +..+.+..|.+++..
T Consensus 16 ~~dw~~ileicD~In~~~~~~k~a~rai~krl~~~--n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k 93 (139)
T cd03567 16 EEDWEAIQAFCEQINKEPEGPQLAVRLLAHKIQSP--QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPK 93 (139)
T ss_pred CCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccc
Confidence 345555555555553321 123445555555544 455555544433332 112334445555432
Q ss_pred -----CCHHHHHHHHHHHHhch
Q 021051 282 -----PEPIVSQSCEVALSMLE 298 (318)
Q Consensus 282 -----~~~~vr~~a~~aL~~l~ 298 (318)
.++.|+..+..-+..+.
T Consensus 94 ~~~~~~~~~Vk~kil~li~~W~ 115 (139)
T cd03567 94 YLGSRTSEKVKTKIIELLYSWT 115 (139)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH
Confidence 45666666666666554
No 262
>KOG1988 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.62 E-value=2.6e+02 Score=28.33 Aligned_cols=226 Identities=17% Similarity=0.096 Sum_probs=118.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCC--------hHHHHHHhccCCCHHHHHHHHHHHhccCCC-CcHHHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPG--------PRDALIRATKDSSNLLAHEAAFALGQMQDA-EAIPALEA 87 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~--------~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~ 87 (318)
....|-+.|.+..- ...-.++..+.++.... ..=.|..++.+.+..+|...++..++.+.. +-+....+
T Consensus 25 ~~~~ldkGlr~~~t--~eqpeavvr~~RLFek~PfpifiNs~llrLaDaF~~Gn~llRf~V~rv~~q~g~hln~v~n~aE 102 (970)
T KOG1988|consen 25 VLMELDKGLRSGKT--SEQPEAVVRFPRLFEKYPFPIFINSQLLRLADAFPVGNNLLRFAVLRVDQQSGKHLNKVLNGAE 102 (970)
T ss_pred HHHHHhhccccccc--ccchHHHHHHHHHHhhCCchhhhhHHHHHHHHHhccCcHHHHHHHHHHHhhccccchhhhhhhh
Confidence 33445666664432 34444444443333222 233444566788999999999999986642 11222222
Q ss_pred hhh-----cCCCCHHHHHHHHHHHHhcC----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCC
Q 021051 88 VLN-----DFSLHPIVRHEAAEALGAIG----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERS 158 (318)
Q Consensus 88 ~l~-----~~~~~~~vR~~a~~~L~~~~----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~ 158 (318)
++. ....||.-|...++.++.+. .....+.++..-....+..--+++..+...+.. .+..
T Consensus 103 ~lrri~~V~hsnDp~aRAllL~ilg~~s~lipEfn~~hhlIr~sl~S~helE~eaa~~Aaa~Faa--~sk~--------- 171 (970)
T KOG1988|consen 103 FLRRIFYVDHSNDPVARALLLRILGQLSALIPEFNQVHHLIRISLDSHHELEVEAAEFAAACFAA--QSKD--------- 171 (970)
T ss_pred hhheeEEeecCCCHHHHHHHHHHHHHhhhhcccccchhHHHHHHhcCccchhhHHHHHHHhhhhh--hhhh---------
Confidence 222 23578999999999999765 223445555433323333333455555555540 0000
Q ss_pred CCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----hhHHHHHHHHhCCCC-HHHHHHHHHHHhc
Q 021051 159 PFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----DEAVSAIIDSLGATS-ALLKHEVAYVLGQ 232 (318)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----~~~~~~l~~~l~d~~-~~vr~~a~~~L~~ 232 (318)
|. ......+-+.+...+.+.+.+...+-.+..++. ..+......++.+.. ...-..-+..+..
T Consensus 172 -FA----------~si~gkis~mIef~d~~~~mkL~li~Vfs~M~c~at~A~ra~~l~m~lv~~tps~d~~v~fL~stT~ 240 (970)
T KOG1988|consen 172 -FA----------CSICGKISDMIEFLDLPVPMKLSLIPVFSHMHCHATGASRAFGLCMSLVSGTPSIDRVVAFLYSTTN 240 (970)
T ss_pred -hH----------HHHHHHHHHHhhcccCCCCcchhHhHHHHHhcchhhhhHHHHHHHHHHhcCCCcccceeeehhhhHH
Confidence 00 112334444455444444457777777777754 344445555554321 1111111222222
Q ss_pred ------cCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 233 ------LQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 233 ------~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
..-++..+.|.+.++.+ +...+|...++.+..+.
T Consensus 241 Lasrs~~ai~eq~d~l~q~~ked-~~kivr~~vl~kl~~La 280 (970)
T KOG1988|consen 241 LASRSLVAISEQSDVLLQFLKED-ERKIVRLKVLRKLDFLA 280 (970)
T ss_pred HHHHHHHHhHHHHHHHHHhhcCC-chhHHHHHHHHHHHHHh
Confidence 22356678888888743 26778888888777664
No 263
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=52.10 E-value=26 Score=25.19 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=17.4
Q ss_pred HHHHHHh--hcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 272 IGLLKEF--AKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 272 ~~~L~~~--l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++.+... .++.+|++|.-|+.++..+-.++..-
T Consensus 30 i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eN 64 (102)
T PF09759_consen 30 IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPEN 64 (102)
T ss_pred hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHH
Confidence 4444442 23455666666666666665555433
No 264
>PF05536 Neurochondrin: Neurochondrin
Probab=51.90 E-value=2.3e+02 Score=27.29 Aligned_cols=209 Identities=21% Similarity=0.170 Sum_probs=113.4
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC--
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF-- 92 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~-- 92 (318)
...++.-..+|++.+. ..|+.++..+.++.+. ++.+...+.....++| ...|..+|.+.
T Consensus 4 ~~~l~~c~~lL~~~~D--~~rfagL~lvtk~~~~----------~~~~~~~~~~v~~aig-------~~Fl~RLL~t~~~ 64 (543)
T PF05536_consen 4 SASLEKCLSLLKSADD--TERFAGLLLVTKLLDA----------DDEDSQTRRRVFEAIG-------FKFLDRLLRTGSV 64 (543)
T ss_pred hHHHHHHHHHhccCCc--HHHHHHHHHHHHcCCC----------chhhHHHHHHHHHhcC-------hhHHHHHhcCCCC
Confidence 4577888889998884 7899888887776552 1112233333333333 24444445421
Q ss_pred --C-CCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCC
Q 021051 93 --S-LHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP 159 (318)
Q Consensus 93 --~-~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~ 159 (318)
+ +....+.-|+..|+.+..+ ..+|.|.+.+.+..+..+...+..+|..+.. ...+
T Consensus 65 ~~~~~~~~~~~LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias---~~~G--------- 132 (543)
T PF05536_consen 65 PSDCPPEEYLSLAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIAS---SPEG--------- 132 (543)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHc---CcHh---------
Confidence 1 2244566677777766532 1478888866555554777778888877761 1111
Q ss_pred CcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----CC----------hhHHHHHHHHhCCCCHHHHHH
Q 021051 160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH----GG----------DEAVSAIIDSLGATSALLKHE 225 (318)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~~----------~~~~~~l~~~l~d~~~~vr~~ 225 (318)
...+...+.++.|.+.+.+.... ...|+..+..+ +. ...+..+.+.+.......+.+
T Consensus 133 ------~~aLl~~g~v~~L~ei~~~~~~~---~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfe 203 (543)
T PF05536_consen 133 ------AKALLESGAVPALCEIIPNQSFQ---MEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFE 203 (543)
T ss_pred ------HHHHHhcCCHHHHHHHHHhCcch---HHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHH
Confidence 01111245678888888763332 45555555443 21 022333444444455556777
Q ss_pred HHHHHhccCC----------------cchHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 226 VAYVLGQLQN----------------KAASAALSDVLRNVNEHPMVRHEAAEALG 264 (318)
Q Consensus 226 a~~~L~~~~~----------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~ 264 (318)
++..|+.+=. ......|...+.+.. .+.-|..+....+
T Consensus 204 ll~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~-~~~~R~~al~Laa 257 (543)
T PF05536_consen 204 LLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQSRL-TPSQRDPALNLAA 257 (543)
T ss_pred HHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Confidence 7777765421 123445555555532 5666665555433
No 265
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=50.64 E-value=62 Score=30.70 Aligned_cols=95 Identities=13% Similarity=0.122 Sum_probs=69.4
Q ss_pred cCCCChHHHHHHhccCCCHHHHHHHHHHHhccC-----------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---
Q 021051 45 LKGPGPRDALIRATKDSSNLLAHEAAFALGQMQ-----------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG--- 110 (318)
Q Consensus 45 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--- 110 (318)
+.+....+.|+++|.+|+-.+...+.-++...- ....++.|..++. .+|..+|....+.+.++-
T Consensus 427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~--sKDdaLqans~wvlrHlmync 504 (743)
T COG5369 427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVM--SKDDALQANSEWVLRHLMYNC 504 (743)
T ss_pred ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhh--cchhhhhhcchhhhhhhhhcC
Confidence 455688999999999877666655554443321 2367899999999 678888888888887542
Q ss_pred CC---------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 111 LE---------SNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 111 ~~---------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+. --...+.. +.+||...|+......|.++-
T Consensus 505 q~~ekf~~Lakig~~kvl~-~~NDpc~~vq~q~lQilrNft 544 (743)
T COG5369 505 QKNEKFKFLAKIGVEKVLS-YTNDPCFKVQHQVLQILRNFT 544 (743)
T ss_pred cchhhhhhHHhcCHHHHHH-HhcCcccccHHHHHHHHHhcc
Confidence 11 12455677 779999999999999999886
No 266
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=49.38 E-value=1e+02 Score=27.95 Aligned_cols=78 Identities=13% Similarity=0.096 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhccC------------CCCcHHHHHHhhhcCCCCH
Q 021051 31 PISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQMQ------------DAEAIPALEAVLNDFSLHP 96 (318)
Q Consensus 31 ~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~~~~~ 96 (318)
||..-..++-.++.-. ..+.+..|.+.|++.++.|...|+..++.+. ..++...|..++.+ ...+
T Consensus 25 nW~~IlDvCD~v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~-~~h~ 103 (462)
T KOG2199|consen 25 NWSLILDVCDKVGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIES-KAHP 103 (462)
T ss_pred cHHHHHHHHHhhcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhh-cccH
Confidence 6888888888887654 3578899999999999999999998886543 34567777777773 4557
Q ss_pred HHHHHHHHHHHhc
Q 021051 97 IVRHEAAEALGAI 109 (318)
Q Consensus 97 ~vR~~a~~~L~~~ 109 (318)
.|+...-..+..+
T Consensus 104 kV~~k~~~lv~eW 116 (462)
T KOG2199|consen 104 KVCEKMRDLVKEW 116 (462)
T ss_pred HHHHHHHHHHHHH
Confidence 7765555554443
No 267
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=48.23 E-value=91 Score=21.67 Aligned_cols=46 Identities=22% Similarity=0.444 Sum_probs=26.2
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhcCCC
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAKDPE 283 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~~~~ 283 (318)
++..|.+..+|..-..++|++|-++.-.+.+ ..++..|.+..+|++
T Consensus 18 ~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPN 72 (93)
T COG1698 18 VMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPN 72 (93)
T ss_pred HHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCC
Confidence 3444444444443334566666655555432 246777888888876
No 268
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.64 E-value=88 Score=27.90 Aligned_cols=56 Identities=14% Similarity=0.124 Sum_probs=31.4
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhC--------------CChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNH--------------GGDEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~--------------~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
......++.+++.- .|+.+++.||.+ .+++-+..+..+|+|++..++.+|...+.-
T Consensus 211 f~~~~~Ll~s~NYv--tkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 211 FQKYNKLLESSNYV--TKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHHHCT-SSHH--HHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCeE--eehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 34445555554443 477777777755 234556666666777777777777666643
No 269
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.51 E-value=62 Score=30.26 Aligned_cols=80 Identities=10% Similarity=-0.015 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhc------------cCCCCcHHHHHHhhhcCCCCH
Q 021051 31 PISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQ------------MQDAEAIPALEAVLNDFSLHP 96 (318)
Q Consensus 31 ~~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~~~~~~~ 96 (318)
||..-+..+..+..- +.++++..|.+.+++.++.++..|+..|-. +....+++.++.+.++...+-
T Consensus 18 DWa~NleIcD~IN~~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~ 97 (470)
T KOG1087|consen 18 DWALNLEICDLINSTEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDL 97 (470)
T ss_pred cHHHHHHHHHHHhcCccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcch
Confidence 577777788777554 335788889999998888898888886642 223455666677777422677
Q ss_pred HHHHHHHHHHHhcC
Q 021051 97 IVRHEAAEALGAIG 110 (318)
Q Consensus 97 ~vR~~a~~~L~~~~ 110 (318)
.||..++..|-.+.
T Consensus 98 ~Vr~kiL~LI~~W~ 111 (470)
T KOG1087|consen 98 KVREKILELIDTWQ 111 (470)
T ss_pred hHHHHHHHHHHHHH
Confidence 88888888886543
No 270
>cd00871 PI4Ka Phosphoinositide 4-kinase(PI4K), accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. PI4K phosphorylates hydroxylgroup at position 4 on the inositol ring of phosphoinositide, the first commited step in the phosphatidylinositol cycle.
Probab=47.41 E-value=1.4e+02 Score=23.77 Aligned_cols=30 Identities=17% Similarity=0.148 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHhccCCcc---hHHHHHHHHhc
Q 021051 219 SALLKHEVAYVLGQLQNKA---ASAALSDVLRN 248 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~~---~~~~L~~~l~~ 248 (318)
++.||..|+.+|....+++ .++.|++.++-
T Consensus 84 ~~~Vr~yAvr~L~~~~~e~l~~YlpQLVQaLry 116 (175)
T cd00871 84 HPLVLQYAVRVLESYPVETVFFYIPQIVQALRY 116 (175)
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc
Confidence 6778888888888877665 35666666654
No 271
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=46.91 E-value=69 Score=33.65 Aligned_cols=26 Identities=35% Similarity=0.233 Sum_probs=14.0
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
...|.+.+- ++.|.+|+++..++..+
T Consensus 79 ~e~L~~~~~--~~~we~rhg~~i~lrei 104 (1549)
T KOG0392|consen 79 LEELVNDLF--EPQWEIRHGAAIALREI 104 (1549)
T ss_pred HHHHHHHhc--CchhhhhcCcchhhhhH
Confidence 344444444 56666666666555544
No 272
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=46.88 E-value=1.4e+02 Score=29.45 Aligned_cols=117 Identities=20% Similarity=0.068 Sum_probs=69.3
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccC----CCChHHHHHHhcc-CCCHHHHHHHHHHHhccCCC---CcHHHHHH
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLK----GPGPRDALIRATK-DSSNLLAHEAAFALGQMQDA---EAIPALEA 87 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~----~~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~---~~~~~L~~ 87 (318)
..+..|+..|.+++. .+...+-..+.... ++-.+..|+.+.- ..+ ..++..|..++.+ .....|-+
T Consensus 4 ~~~~~l~~~l~s~~~--~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s----~~~~~il~~~~~P~~K~~~~~l~~ 77 (668)
T PF04388_consen 4 ASITELLSLLESNDL--SVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNS----QRALEILVGVQEPHDKHLFDKLND 77 (668)
T ss_pred ccHHHHHHHhcCCch--hhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCc----HHHHHHHHhcCCccHHHHHHHHHH
Confidence 457778888888875 55544444443332 2345555665542 222 2344445455442 33444444
Q ss_pred hhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 88 VLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 88 ~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+. .+.-|..++..|+.+- ....++.|.+++..|.+..+-..|+.+|.-+-
T Consensus 78 ~~~----~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 78 YFV----KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLL 139 (668)
T ss_pred HHc----CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHh
Confidence 444 3467778888887642 34567777777888888888888887776543
No 273
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=46.82 E-value=1.8e+02 Score=24.52 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=66.5
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051 122 LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN 201 (318)
Q Consensus 122 l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~ 201 (318)
|.+|+|+.|.+.++.+...+ .+.+++.+..+ .. -......+..
T Consensus 1 Ll~d~d~~v~K~~I~~~~~i---------------------------------y~~~~~~i~~~-~~---~~~~W~~~~~ 43 (239)
T PF11935_consen 1 LLNDEDPAVVKRAIQCSTSI---------------------------------YPLVFRWICVN-PS---DEQLWESMNE 43 (239)
T ss_dssp HCT-SSHHHHHHHHHHHHHH---------------------------------HHHHHHHHS---HH---HHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHH---------------------------------HHHHHHHHcCC-ch---HHHHHHHHHH
Confidence 35788999999999988854 34455555111 11 2223333333
Q ss_pred CCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC------CcchHH-------HHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 202 HGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ------NKAASA-------ALSDVLRNVNEHPMVRHEAAEALGSIAD 268 (318)
Q Consensus 202 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~------~~~~~~-------~L~~~l~~~~~~~~vr~~a~~aL~~~~~ 268 (318)
+ -..+...+.+.++.+|..+++.+..+= .....+ +=+..+. ..+|-++...+++-+.
T Consensus 44 l-----K~~Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp--~~Hp~l~~~~Le~Ea~--- 113 (239)
T PF11935_consen 44 L-----KDRILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVP--PNHPLLNPQQLEAEAN--- 113 (239)
T ss_dssp H-----HHHHHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS---TT-SSS-HHHHHHHHH---
T ss_pred H-----HHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcC--CCCCcCCHHHHHHHHH---
Confidence 2 233556677778888888888776531 100000 0011111 1245555555555444
Q ss_pred hhhHHHHHHhhcCC--CHHHHHHHHHHHHhchhhhc
Q 021051 269 DQSIGLLKEFAKDP--EPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 269 ~~~~~~L~~~l~~~--~~~vr~~a~~aL~~l~~~~~ 302 (318)
..++.|...+.++ ++.+-..++.+|..|-..-.
T Consensus 114 -~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP 148 (239)
T PF11935_consen 114 -GLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRP 148 (239)
T ss_dssp -HHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSG
T ss_pred -HHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh
Confidence 4566666665543 35555666666666655433
No 274
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=45.63 E-value=46 Score=31.48 Aligned_cols=104 Identities=15% Similarity=0.106 Sum_probs=69.8
Q ss_pred CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhc
Q 021051 78 DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKA 146 (318)
Q Consensus 78 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~ 146 (318)
+......|.++|. +|+..+...+...+++.- ....++.|.+ +...+|..+|....|.+.++. +-.
T Consensus 429 d~~I~elLi~~Ls--~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~-~v~sKDdaLqans~wvlrHlm-ync 504 (743)
T COG5369 429 DYPIVELLIDALS--NPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVN-LVMSKDDALQANSEWVLRHLM-YNC 504 (743)
T ss_pred ccchHHHHHHHhc--CccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHH-Hhhcchhhhhhcchhhhhhhh-hcC
Confidence 4467788888888 666666555555554431 2356888888 556778899999999999887 322
Q ss_pred cCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051 147 SGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH 202 (318)
Q Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~ 202 (318)
......+.++ +-.++.++.+..|+...+ ....++.|.++
T Consensus 505 q~~ekf~~La---------------kig~~kvl~~~NDpc~~v--q~q~lQilrNf 543 (743)
T COG5369 505 QKNEKFKFLA---------------KIGVEKVLSYTNDPCFKV--QHQVLQILRNF 543 (743)
T ss_pred cchhhhhhHH---------------hcCHHHHHHHhcCccccc--HHHHHHHHHhc
Confidence 2222111111 235777888888888775 88888888876
No 275
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.12 E-value=1.3e+02 Score=28.28 Aligned_cols=87 Identities=16% Similarity=0.106 Sum_probs=49.7
Q ss_pred hCCCCHHHHHHHHHHHhc--cCCcchHHHHHHHHhccCCCHHHHHHHHHHHhc------------cCChhhHHHHHHhhc
Q 021051 215 LGATSALLKHEVAYVLGQ--LQNKAASAALSDVLRNVNEHPMVRHEAAEALGS------------IADDQSIGLLKEFAK 280 (318)
Q Consensus 215 l~d~~~~vr~~a~~~L~~--~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~ 280 (318)
+..+||.+..+++..+.. .+.++++-.|.+.+.+. ++.+.+-|+..|-. +.+.+.++.+++..+
T Consensus 14 l~~pDWa~NleIcD~IN~~~~~~~eAvralkKRi~~k--~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k 91 (470)
T KOG1087|consen 14 LAEPDWALNLEICDLINSTEGGPKEAVRALKKRLNSK--NSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPK 91 (470)
T ss_pred ccCccHHHHHHHHHHHhcCccCcHHHHHHHHHHhccC--CcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 345667666666666643 23346666666666665 45555555554331 223344555555444
Q ss_pred C--CCHHHHHHHHHHHHhchhhhcc
Q 021051 281 D--PEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 281 ~--~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
. .+..||..++..|..|...-.+
T Consensus 92 ~~~~~~~Vr~kiL~LI~~W~~af~~ 116 (470)
T KOG1087|consen 92 NKPRDLKVREKILELIDTWQQAFCG 116 (470)
T ss_pred cCCcchhHHHHHHHHHHHHHHHccC
Confidence 3 4567777777777776655444
No 276
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=43.68 E-value=86 Score=22.97 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=15.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhccCC
Q 021051 208 VSAIIDSLGATSALLKHEVAYVLGQLQN 235 (318)
Q Consensus 208 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~ 235 (318)
++.|+..+.|+++.|...|+..|-+...
T Consensus 10 i~lLv~QL~D~~~~V~~~A~~iL~e~c~ 37 (115)
T PF14663_consen 10 IELLVTQLYDPSPEVVAAALEILEEACE 37 (115)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3445555555565666666666555443
No 277
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=42.97 E-value=1.4e+02 Score=22.27 Aligned_cols=13 Identities=15% Similarity=0.003 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHhc
Q 021051 220 ALLKHEVAYVLGQ 232 (318)
Q Consensus 220 ~~vr~~a~~~L~~ 232 (318)
..+...++.+++.
T Consensus 100 ~~~~~~~L~~l~s 112 (148)
T PF08389_consen 100 EELVKAALKCLKS 112 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555555554
No 278
>PF01851 PC_rep: Proteasome/cyclosome repeat; InterPro: IPR002015 A weakly conserved repeat module of unknown function, which occurs in two regulatory subunits of the 26S-proteasome and in one subunit of the APC-complex (cyclosome) [].; PDB: 4ADY_A.
Probab=42.18 E-value=61 Score=17.95 Aligned_cols=20 Identities=15% Similarity=0.400 Sum_probs=12.3
Q ss_pred ChhhHHHHHHhhcCCCHHHH
Q 021051 268 DDQSIGLLKEFAKDPEPIVS 287 (318)
Q Consensus 268 ~~~~~~~L~~~l~~~~~~vr 287 (318)
+.++++.|..++.+++..++
T Consensus 15 ~~~~~~~L~~~l~~~~~~~~ 34 (35)
T PF01851_consen 15 NEEVLDLLRPYLSDTSNEMI 34 (35)
T ss_dssp -HHHHHHHHHHHCTSSHHHH
T ss_pred CHHHHHHHHHHHHhcccccc
Confidence 45577777777776665543
No 279
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=41.92 E-value=68 Score=29.07 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=10.2
Q ss_pred CCCCCHHHHHHHHHHHhcc
Q 021051 27 DPTQPISERFRALFSLRNL 45 (318)
Q Consensus 27 ~~~~~~~~r~~A~~~l~~~ 45 (318)
++..||..+..|+..++.+
T Consensus 264 ~~~~~w~~KD~Al~Li~al 282 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGAL 282 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHH
Confidence 4555566666666665554
No 280
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=41.53 E-value=2.1e+02 Score=23.91 Aligned_cols=61 Identities=13% Similarity=0.107 Sum_probs=39.6
Q ss_pred ChhHHHHHHHHh-CCCCHHHHHHHHHHHhccCCcch------HHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 204 GDEAVSAIIDSL-GATSALLKHEVAYVLGQLQNKAA------SAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 204 ~~~~~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~~~------~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
..+.++.|..++ .+.++.++..+++++..+...++ ...|...+..+ ..|.|-...+.-++-
T Consensus 119 g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~-~rp~v~~~l~~l~~l 186 (234)
T PF12530_consen 119 GVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLD-YRPLVLKSLCSLFAL 186 (234)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCc-cchHHHHHHHHHHHH
Confidence 356777888888 78888889999999988875443 34455555332 356666644444433
No 281
>PLN00094 aconitate hydratase 2; Provisional
Probab=41.46 E-value=1.9e+02 Score=29.52 Aligned_cols=135 Identities=17% Similarity=0.073 Sum_probs=85.3
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh------H-HHHHHhcc---CCCHHHHHHHHHHHhccCCCCc
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP------R-DALIRATK---DSSNLLAHEAAFALGQMQDAEA 81 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~------~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 81 (318)
.++.+.+..|+++|+++.. ..+...+..|...-.|.. . ..|....+ .....-+..|...||.+...-.
T Consensus 90 pl~~~q~~~~~~ll~~~~~--~~~~~~~~l~~~rv~pgvd~aa~vka~fl~~i~~g~~~~~~i~~~~a~~llg~m~ggyn 167 (938)
T PLN00094 90 PLDAKQVSELIAQLEAPKS--EDADRLVDLLVNRVPPGVDEAAYVKASWLAAVAKGETRSPLISRARAVEILGTMQGGYN 167 (938)
T ss_pred CCCHHHHHHHHHHhcCCCC--ccHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhhccCCCc
Confidence 4677889999999998865 566667777766654422 1 11222222 2233558899999999988788
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMT 155 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l 155 (318)
+..|+++|. |..+...|..+|.+.- --+....+.+ +.+..+. .-+..+.+.+.-. |.-+.+.+.+.+
T Consensus 168 v~~l~~~l~----d~~~a~~a~~~l~~~~l~~d~~~~v~~-~~~~gn~-~a~~v~~swa~ae-wf~~~~~~~~~i 235 (938)
T PLN00094 168 ISPLVDALD----DDELGRIAADQLSHTLLVFDAFHDVQA-KAKKGNA-YATQVMESWADAE-WFTKKPPVPEKI 235 (938)
T ss_pred HHHHHHHhc----CHHHHHHHHHHHhhcEEeecchHHHHH-HHHccCH-HHHHHHHHHhhhh-hhhcCCCCccee
Confidence 999999985 5677788888888643 1233333444 3333333 3344455555555 777776655544
No 282
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.26 E-value=1e+02 Score=22.99 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=42.9
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCC
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPA 127 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~ 127 (318)
++.+.|.+.|++.++.|+..+++.|-.+.... -+.+..-+. .... .++.+..+. .++- +.. .++.
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G-~~~f~~~~~--~~~~-----~Ik~~~~f~g~~Dp---~~G---d~~~ 103 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKG-NSDFKRELQ--RNSA-----QIRECANYKGPPDP---LKG---DSLN 103 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhC-CHHHHHHHH--HhHH-----HHHHHHHcCCCCCc---ccC---cchh
Confidence 57777888888888888888888776544422 133333333 1112 222232222 1111 111 3456
Q ss_pred HHHHHHHHHHHHHH
Q 021051 128 QEVRETCELALERI 141 (318)
Q Consensus 128 ~~vr~~a~~aL~~~ 141 (318)
..||..|-+++..+
T Consensus 104 ~~VR~~A~El~~~i 117 (122)
T cd03572 104 EKVREEAQELIKAI 117 (122)
T ss_pred HHHHHHHHHHHHHH
Confidence 77888887777654
No 283
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=40.40 E-value=1.2e+02 Score=25.80 Aligned_cols=105 Identities=17% Similarity=0.166 Sum_probs=51.7
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhH----HHHHHHHhCCCCHHHHHHHHHHHhccCC-cchHHHHHHHHh
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHGGDEA----VSAIIDSLGATSALLKHEVAYVLGQLQN-KAASAALSDVLR 247 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~----~~~l~~~l~d~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~ 247 (318)
++...+.+.+........++..-++.+...+...- +..+.... .+++.+......+.-.++. .+++..+...+.
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccc
Confidence 35566666665332222356666777766665432 22222222 2233344444444444454 478999999988
Q ss_pred ccCCCHHHHHHHHHHHhccCChh-hHHHHHHh
Q 021051 248 NVNEHPMVRHEAAEALGSIADDQ-SIGLLKEF 278 (318)
Q Consensus 248 ~~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~ 278 (318)
..+.||.+...-+.+|...|..+ +.....++
T Consensus 243 ~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 243 LNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HSTT-HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 65669999999999999998654 55544443
No 284
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=40.28 E-value=92 Score=19.51 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=32.0
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hhHHHHHHhhcC
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QSIGLLKEFAKD 281 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~ 281 (318)
+++..+.+.+...++++.++...+.++...|+. ++...|..++..
T Consensus 9 ~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 9 EAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777777765566888998888888888864 466667666553
No 285
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.52 E-value=6e+02 Score=28.60 Aligned_cols=88 Identities=23% Similarity=0.214 Sum_probs=59.1
Q ss_pred HHHHhccCCCHHHHHHHHHHHhccC----CCC----cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------CC----C
Q 021051 53 ALIRATKDSSNLLAHEAAFALGQMQ----DAE----AIPALEAVLNDFSLHPIVRHEAAEALGAIG-------LE----S 113 (318)
Q Consensus 53 ~L~~~l~d~~~~vr~~a~~aL~~~~----~~~----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~~----~ 113 (318)
.+...+..++|..|-.+..+++++. ... ....+..-++ ...|+..|..-..++|.+. +. .
T Consensus 880 l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdkla-s~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t 958 (2067)
T KOG1822|consen 880 LIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLA-SARDPITRTGHSLALGCLHKYVGSIGSGQHLNT 958 (2067)
T ss_pred HHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhccCCCCchhccc
Confidence 3334456788999999999988864 222 2334444444 2677888888888887652 21 2
Q ss_pred cHHHHHhhhccCCCH-HHHHHHHHHHHHHH
Q 021051 114 NIPLLKNSLVSDPAQ-EVRETCELALERIE 142 (318)
Q Consensus 114 ~~~~L~~~l~~d~~~-~vr~~a~~aL~~~~ 142 (318)
.+..+.. +.+|+.+ .|+..+..++..+.
T Consensus 959 ~v~illa-l~~Ds~~p~VqtwSL~al~~i~ 987 (2067)
T KOG1822|consen 959 SVSILLA-LATDSTSPVVQTWSLHALALIL 987 (2067)
T ss_pred HHHHHHH-HhhcCCCchhhhhHHHHHHHHH
Confidence 3556666 6677654 99999999998876
No 286
>PF11940 DUF3458: Domain of unknown function (DUF3458); InterPro: IPR024601 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain, which contains a conserved FSAPV sequence motif, is found in the C-terminal of alanyl aminopeptidases that belong to MEROPS peptidase family M1 (aminopeptidase N, clan MA). ; PDB: 3EBH_A 3EBG_A 3T8V_A 3Q44_A 3Q43_A 3EBI_A 3PUU_A 3B37_A 3B2P_A 3B3B_A ....
Probab=39.41 E-value=2.9e+02 Score=25.01 Aligned_cols=105 Identities=16% Similarity=0.074 Sum_probs=73.6
Q ss_pred HHHHHHHHHhccCCCChHHHHHHhccC-CCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC
Q 021051 34 ERFRALFSLRNLKGPGPRDALIRATKD-SSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE 112 (318)
Q Consensus 34 ~r~~A~~~l~~~~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~ 112 (318)
.|-.++..|...+++.......+.+.+ .+-.-|..|+.+|...........|..+...-..++-|--.-+..-+....+
T Consensus 220 Lkn~~L~yL~~~~~~~~~~la~~qy~~A~nMTD~laAL~~l~~~~~~~r~~~L~~Fy~~w~~d~LV~dKWFalQA~~~~~ 299 (367)
T PF11940_consen 220 LKNLCLSYLAAADDPEAAELAQEQYKSADNMTDRLAALSALVNSDSPEREEALEDFYERWKDDPLVMDKWFALQASSPSP 299 (367)
T ss_dssp HHHHHHHHHHHCTCTHHHHHHHHHHHHSSSHHHHHHHHHHHCCTTSTTHHHHHHHHHHHHTTSHHHHHHHHHHHHT--ST
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHHccChHHHHHHHHHHhCCCCc
Confidence 445566666666776777777777754 4788999999999998876666666666664456777776666666666677
Q ss_pred CcHHHHHhhhccCC-----CHHHHHHHHHHHH
Q 021051 113 SNIPLLKNSLVSDP-----AQEVRETCELALE 139 (318)
Q Consensus 113 ~~~~~L~~~l~~d~-----~~~vr~~a~~aL~ 139 (318)
+.+..+.+ |.++| +|.--++.+.++.
T Consensus 300 ~~l~~V~~-L~~Hp~F~~~NPNrvRaLig~Fa 330 (367)
T PF11940_consen 300 DTLERVKK-LMQHPAFDLKNPNRVRALIGAFA 330 (367)
T ss_dssp THHHHHHH-HTTSTTTTTT-HHHHHHHHHHHH
T ss_pred cHHHHHHH-HhcCCCCCCCCCcHHHHHHHHHH
Confidence 89999998 66665 5766666666666
No 287
>COG5330 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.56 E-value=1.5e+02 Score=26.74 Aligned_cols=61 Identities=26% Similarity=0.136 Sum_probs=46.9
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--C-------ChHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--P-------GPRDALIRATKDSSNLLAHEAAFALGQMQD 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 78 (318)
.++..++..++++.+ ..|..++..++-... + ...+.+..++.|.++.+|..++.+|++...
T Consensus 7 ~~~~~~i~~~~~a~~--~eR~~~A~~l~~~~~~~~~sr~d~~~~~~l~~~Ll~d~s~~vrr~lA~aL~~~~~ 76 (364)
T COG5330 7 STDQDLIRLLEEASS--GERALAARVLAFASLQRPLSREDMRQFEDLARPLLDDSSEEVRRELAAALAQCET 76 (364)
T ss_pred hhHHHHHHHhcCCCh--hHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhhCccHHHHHHHHHHHHhCCc
Confidence 366778999999987 889888888765432 1 234555567799999999999999998664
No 288
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=37.98 E-value=2.3e+02 Score=27.50 Aligned_cols=136 Identities=19% Similarity=0.102 Sum_probs=85.4
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh------HHHHHHhc-c-C-CCH-HHHHHHHHHHhccCCCCc
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP------RDALIRAT-K-D-SSN-LLAHEAAFALGQMQDAEA 81 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~------~~~L~~~l-~-d-~~~-~vr~~a~~aL~~~~~~~~ 81 (318)
.++.+....|+++|+++.. ..+..++..+...-.|.. ...+...+ . + ..| .-...|...||.+...-.
T Consensus 21 Pl~a~qtaeliELlk~pp~--~~~~~~l~ll~~rv~pGvd~AA~VKA~FL~ai~~gev~~p~Is~~~A~eLLgtM~GGyn 98 (852)
T COG1049 21 PLDAQQTAELVELLKNPPA--GEEEFLLDLLINRVPPGVDEAAYVKAGFLAAIAKGEVLSPLISPEKATELLGTMLGGYN 98 (852)
T ss_pred CCCHHHHHHHHHHhcCCCc--chHHHHHHHHHccCCCCCchHHHHHHHHHHHHHcCCccccccCHHHHHHHHHhccCCCc
Confidence 4677889999999999987 788889988877655422 11222222 1 1 123 447889999999988788
Q ss_pred HHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccccccc
Q 021051 82 IPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTE 156 (318)
Q Consensus 82 ~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~ 156 (318)
+..|++++. | ..+-..|.++|...- --+..-.+.. ..+..++. -+....+.+.-. |..+.+.+.+.+.
T Consensus 99 i~~Li~~l~--d--~~ia~~Aae~Lk~tll~~D~f~dv~e-~ak~Gn~~-Ak~Vl~SwA~ae-wF~~~p~v~e~i~ 167 (852)
T COG1049 99 IHPLIDLLD--D--AAIAAIAAEALKHTLLMFDAFHDVAE-KAKAGNAY-AKQVLQSWADAE-WFLSRPALPEKIT 167 (852)
T ss_pred HHHHHHHhh--h--hhhhHHHHHHhhheeeehhhHHHHHH-HHhccCHH-HHHHHHHHhhhh-hhhcCcccCceeE
Confidence 999999998 3 345556777777532 1122333444 32333443 344555555555 7777777655553
No 289
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.83 E-value=4.4e+02 Score=26.73 Aligned_cols=60 Identities=23% Similarity=0.267 Sum_probs=40.7
Q ss_pred HHHHHhhh-cCCCCHHHHHHHHHHHHhcCCCCcH-HHHHhhhccCC-CHHHHHHHHHHHHHHH
Q 021051 83 PALEAVLN-DFSLHPIVRHEAAEALGAIGLESNI-PLLKNSLVSDP-AQEVRETCELALERIE 142 (318)
Q Consensus 83 ~~L~~~l~-~~~~~~~vR~~a~~~L~~~~~~~~~-~~L~~~l~~d~-~~~vr~~a~~aL~~~~ 142 (318)
..|...+. +-++||.+|+.+=++|...+..... -.|..++.++. ++.+|.+|+-++.+.-
T Consensus 5 e~l~~~l~qTl~pdps~rk~aEr~L~~~e~q~~y~l~lL~Lv~~~~~d~~~r~aaav~fKN~i 67 (960)
T KOG1992|consen 5 ETLANYLLQTLSPDPSVRKPAERALRSLEGQQNYPLLLLNLVANGQQDPQIRVAAAVYFKNYI 67 (960)
T ss_pred HHHHHHHHhcCCCCCccCchHHHHHHHhccCCCchHHHHHHHhccCcChhHHHHHHHHHHHHH
Confidence 34444444 3357799999999999887654433 34555444444 7899999999998765
No 290
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=37.31 E-value=3.4e+02 Score=25.80 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhccCCC--ChHHHHHHhccCCCHHHHHHHHHHHhccCC----CCcHHHHHHhhh--c-------CCCCHH
Q 021051 33 SERFRALFSLRNLKGP--GPRDALIRATKDSSNLLAHEAAFALGQMQD----AEAIPALEAVLN--D-------FSLHPI 97 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~~--~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----~~~~~~L~~~l~--~-------~~~~~~ 97 (318)
..+...++.+....-+ +....++-.-.|++..|...|-..|.++.. ...+..|..+.. . .--++.
T Consensus 219 ~~K~~il~fL~sg~f~d~~~~~~~liAsad~~~~V~~~ae~~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~ 298 (501)
T PF13001_consen 219 ERKLAILKFLASGFFPDEERFPPLLIASADSNSSVSDRAEDLLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPR 298 (501)
T ss_pred HHHHHHHHHHHhcCCCcHhHHhheeeEEeCCcchHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHH
Confidence 5666777777555432 233333333367777888888888877653 345666666555 1 124578
Q ss_pred HHHHHHHHHHhcC-----CCCcHHHHHhhhccCC--CHHHHHHHHHHH
Q 021051 98 VRHEAAEALGAIG-----LESNIPLLKNSLVSDP--AQEVRETCELAL 138 (318)
Q Consensus 98 vR~~a~~~L~~~~-----~~~~~~~L~~~l~~d~--~~~vr~~a~~aL 138 (318)
+|...+..|++.. .+..+......+ ..+ +..+|..+..-+
T Consensus 299 lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l-~~~~~~~klk~~~l~F~ 345 (501)
T PF13001_consen 299 LQEKILSLLSKSVIAATSFPNILQIVFDGL-YSDNTNSKLKSLALQFI 345 (501)
T ss_pred HHHHHHHHHHHhHHHHhCCccHHHHHhccc-cCCccccccchhcchhh
Confidence 8888888887642 233444444423 333 456666555555
No 291
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=37.07 E-value=80 Score=22.67 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=18.0
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAI 109 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~ 109 (318)
.++.++..-.-.+.+|.+|.+|+.++.++
T Consensus 29 Gi~liL~~c~iD~~nP~irEwai~aiRnL 57 (102)
T PF09759_consen 29 GIPLILSCCNIDDHNPFIREWAIFAIRNL 57 (102)
T ss_pred ChHHHHHhcCCCcccHHHHHHHHHHHHHH
Confidence 35555555553356677777777777665
No 292
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=36.99 E-value=2.3e+02 Score=22.95 Aligned_cols=95 Identities=19% Similarity=0.085 Sum_probs=62.8
Q ss_pred hhHHHHHHHHh--CCCCHHHHHHHHHHH-hccC---CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHH
Q 021051 205 DEAVSAIIDSL--GATSALLKHEVAYVL-GQLQ---NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKE 277 (318)
Q Consensus 205 ~~~~~~l~~~l--~d~~~~vr~~a~~~L-~~~~---~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 277 (318)
.+++..+.+++ ...++.+......++ ...+ .+++...+.+.+...++++..+...+......|+ ++++..+.+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56666666655 344677776666655 3333 3678899999998666688888877777777776 458888888
Q ss_pred hhcC-CCHHHHHHHHHHHHhchh
Q 021051 278 FAKD-PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 278 ~l~~-~~~~vr~~a~~aL~~l~~ 299 (318)
+++- +...-|...+.++...+.
T Consensus 170 aL~l~~~~~~r~~~i~~i~~a~~ 192 (198)
T PRK10370 170 VLDLNSPRVNRTQLVESINMAKL 192 (198)
T ss_pred HHhhCCCCccHHHHHHHHHHHHH
Confidence 7653 333345555566655443
No 293
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=36.79 E-value=1.4e+02 Score=24.09 Aligned_cols=58 Identities=24% Similarity=0.228 Sum_probs=35.9
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhcc----CC-------CChHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNL----KG-------PGPRDALIRATKDSSNLLAHEAAFALGQM 76 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~----~~-------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 76 (318)
.++.+.+.|...+. -.|+.|.+.+.++ +. |..+..|..+|++.++.|...++.+|..+
T Consensus 39 ~Lpif~dGL~Et~~--Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~L 107 (183)
T PF10274_consen 39 YLPIFFDGLRETEH--PYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQL 107 (183)
T ss_pred HHHHHHhhhhccCc--cHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 45556666666655 3466666555443 22 34556666677777777777777777665
No 294
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=3e+02 Score=24.07 Aligned_cols=94 Identities=20% Similarity=0.076 Sum_probs=46.7
Q ss_pred CChHHHHHHhc--cCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCH-HHH-HHHHHHHHhcCCCCcHHHHHhhhc
Q 021051 48 PGPRDALIRAT--KDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHP-IVR-HEAAEALGAIGLESNIPLLKNSLV 123 (318)
Q Consensus 48 ~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~-~vR-~~a~~~L~~~~~~~~~~~L~~~l~ 123 (318)
.++.+.+...+ ...+..++..-++++-..+.......++..+-.+..+. ..+ ..-+..+.+.....-...|...+.
T Consensus 151 ~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~a 230 (304)
T COG3118 151 GEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLA 230 (304)
T ss_pred hhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 34555555555 22345566666666666666555555665555212221 111 122455555555444455555465
Q ss_pred cCC-CHHHHHHHHHHHHHH
Q 021051 124 SDP-AQEVRETCELALERI 141 (318)
Q Consensus 124 ~d~-~~~vr~~a~~aL~~~ 141 (318)
.|| |...|...+..+...
T Consensus 231 adPdd~~aa~~lA~~~~~~ 249 (304)
T COG3118 231 ADPDDVEAALALADQLHLV 249 (304)
T ss_pred hCCCCHHHHHHHHHHHHHc
Confidence 565 555555555444433
No 295
>PLN00094 aconitate hydratase 2; Provisional
Probab=35.39 E-value=2.2e+02 Score=28.98 Aligned_cols=106 Identities=20% Similarity=0.122 Sum_probs=65.9
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHH
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAA 241 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~ 241 (318)
.+....|+++|+++.... +...+..|.+- |.+++. ..|....+ ....-.+..|+..||.|.....+..
T Consensus 93 ~~q~~~~~~ll~~~~~~~--~~~~~~l~~~rv~pgvd~aa~vka~fl~~i~~g~~~~~~i~~~~a~~llg~m~ggynv~~ 170 (938)
T PLN00094 93 AKQVSELIAQLEAPKSED--ADRLVDLLVNRVPPGVDEAAYVKASWLAAVAKGETRSPLISRARAVEILGTMQGGYNISP 170 (938)
T ss_pred HHHHHHHHHHhcCCCCcc--HHHHHHHHhhCCCCCCChHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHhhccCCCcHHH
Confidence 556788999998875543 55666776654 222221 12222221 2233446789999999988888899
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhcCCC
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAKDPE 283 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~~~ 283 (318)
|+++|. |..+-..|+++|...-- -++..-+.+..+..+
T Consensus 171 l~~~l~----d~~~a~~a~~~l~~~~l~~d~~~~v~~~~~~gn 209 (938)
T PLN00094 171 LVDALD----DDELGRIAADQLSHTLLVFDAFHDVQAKAKKGN 209 (938)
T ss_pred HHHHhc----CHHHHHHHHHHHhhcEEeecchHHHHHHHHccC
Confidence 999984 56788889998887421 112333444444444
No 296
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=35.00 E-value=37 Score=29.87 Aligned_cols=15 Identities=20% Similarity=0.120 Sum_probs=10.8
Q ss_pred hHHHHHHhhcCCCCC
Q 021051 17 MEKFLCDRLVDPTQP 31 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~ 31 (318)
.+..|.+.|...++|
T Consensus 357 i~k~L~~~lq~n~~n 371 (432)
T COG5231 357 IVKVLKKYLQSNNPN 371 (432)
T ss_pred HHHHHHHHHhcCCCC
Confidence 566777788877765
No 297
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=34.68 E-value=3.7e+02 Score=24.79 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=38.0
Q ss_pred hHHHHHHHHhCCC-CHHHHHHHHHHHhccC-----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 206 EAVSAIIDSLGAT-SALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 206 ~~~~~l~~~l~d~-~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
+.+..|.+.|..+ ||.+-.-|+.-+|.+- .-.+-..+.+++.++ ||+||++|+.|+-.+
T Consensus 366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~--d~~Vry~ALlavQ~l 436 (442)
T KOG2759|consen 366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHE--DPEVRYHALLAVQKL 436 (442)
T ss_pred HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCC--CchHHHHHHHHHHHH
Confidence 6677777877543 3544444444444431 112446788888887 999999999987653
No 298
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=34.63 E-value=80 Score=28.65 Aligned_cols=32 Identities=19% Similarity=-0.023 Sum_probs=14.9
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLK 46 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~ 46 (318)
+.++++..-.++..|.+. .+|.+|++-|-.+.
T Consensus 58 la~~a~da~~d~~ed~d~--~ir~qaik~lp~fc 89 (460)
T KOG2213|consen 58 LADEAIDAQLDLCEDDDV--GIRRQAIKGLPLFC 89 (460)
T ss_pred hhhHHHHhhhccccccch--hhHHHHHhccchhc
Confidence 344444444444444443 45555555444443
No 299
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=33.91 E-value=2e+02 Score=21.43 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=43.6
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhcCCCH
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAKDPEP 284 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~~~~ 284 (318)
+.+..|.+-|+++++.|+..++.+|..+..... +.....+... . ..++.+..+.. ++-+. =.+...
T Consensus 38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~--~-----~~Ik~~~~f~g~~Dp~~-----Gd~~~~ 104 (122)
T cd03572 38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRN--S-----AQIRECANYKGPPDPLK-----GDSLNE 104 (122)
T ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHh--H-----HHHHHHHHcCCCCCccc-----CcchhH
Confidence 456667777788888888888888877654432 2222222221 1 23333444432 11100 022457
Q ss_pred HHHHHHHHHHHhch
Q 021051 285 IVSQSCEVALSMLE 298 (318)
Q Consensus 285 ~vr~~a~~aL~~l~ 298 (318)
.||.+|..++..|-
T Consensus 105 ~VR~~A~El~~~if 118 (122)
T cd03572 105 KVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888887776553
No 300
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=32.51 E-value=72 Score=23.36 Aligned_cols=24 Identities=29% Similarity=0.201 Sum_probs=13.8
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALG 264 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~ 264 (318)
++.|+..+.|+ ++.|...|++.|-
T Consensus 10 i~lLv~QL~D~--~~~V~~~A~~iL~ 33 (115)
T PF14663_consen 10 IELLVTQLYDP--SPEVVAAALEILE 33 (115)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHH
Confidence 45566666665 5666665555443
No 301
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=31.35 E-value=3.1e+02 Score=27.89 Aligned_cols=136 Identities=20% Similarity=0.100 Sum_probs=84.7
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh-------HHHHHHhccC---CCHHHHHHHHHHHhccCCCC
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP-------RDALIRATKD---SSNLLAHEAAFALGQMQDAE 80 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~-------~~~L~~~l~d---~~~~vr~~a~~aL~~~~~~~ 80 (318)
..++.+.+..|+++|+++.. ......+..|...-.|.. ...|.+..+. ....-+..|...||.+...-
T Consensus 20 ~pl~~~~~~~~~~~l~~~~~--~~~~~~~~l~~~~v~pgv~~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~ 97 (835)
T PRK09238 20 LPLDAEQTAELVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLISPEKAVELLGTMLGGY 97 (835)
T ss_pred CCCCHHHHHHHHHHhcCCCC--ccHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCCCCcCcCHHHHHHHHhhccCCC
Confidence 34677789999999999875 333336666665544321 1122222222 23456889999999998878
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMT 155 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l 155 (318)
.+..|+++|. +..+...|..+|.+.- --+....+.+ +.+..++. -+..+.+.++-. |....+.+.+.+
T Consensus 98 ~~~~l~~~l~----~~~~~~~a~~~l~~~~l~~~~~~~~~~-~~~~gn~~-a~~v~~swa~ae-wf~~~~~l~~~i 166 (835)
T PRK09238 98 NVEPLIDLLD----DAELAPEAAEALKHTLLVFDAFHDVAE-KAKAGNAY-AKEVLESWADAE-WFTSRPELPEKI 166 (835)
T ss_pred cHHHHHHHhc----CHHHHHHHHHHHhccEEeeecHHHHHH-HHHccCHH-HHHHHHHHhhcc-cCCCCCCCcccc
Confidence 8999999998 3447788999988643 2234555666 43343432 344455555554 776666655444
No 302
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=31.30 E-value=2.4e+02 Score=29.31 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=75.8
Q ss_pred CCCHHHHHHHHHHHHhcC--CC------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051 93 SLHPIVRHEAAEALGAIG--LE------SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD 164 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~--~~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (318)
|-++.+|..++..||-+- .| ..+..+=. .++|.+..||..+..+|..+- .+. .....+. .|.
T Consensus 298 DV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGW-tLsDk~~~VRl~~lkaL~~L~--e~~--~~~~~L~--lFt--- 367 (1048)
T KOG2011|consen 298 DVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGW-TLSDKNGTVRLRCLKALIKLY--EKD--EDKDKLE--LFT--- 367 (1048)
T ss_pred cCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcc-eeecCccHHHHHHHHHHHHHH--hcc--ccchHHH--HHH---
Confidence 778999999999998653 22 22333333 458999999999999998875 110 0000000 000
Q ss_pred CCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC-----ChhHHHHHHHHhCCCCHHHHHHHHHHHh
Q 021051 165 PAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG-----GDEAVSAIIDSLGATSALLKHEVAYVLG 231 (318)
Q Consensus 165 ~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~-----~~~~~~~l~~~l~d~~~~vr~~a~~~L~ 231 (318)
...-..+++.. +.+..+.||...+..+-... +...+..+.+++.|.++.++.+|...|-
T Consensus 368 -------sRFK~RIVeMa-drd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~ 431 (1048)
T KOG2011|consen 368 -------SRFKDRIVEMA-DRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLY 431 (1048)
T ss_pred -------HHHHHHHHHHH-hhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcchHHHHHHHHH
Confidence 11335566666 55555556877776655442 2455667778888888888888877664
No 303
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=31.18 E-value=65 Score=28.68 Aligned_cols=41 Identities=29% Similarity=0.403 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 252 HPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
....++.++.++++. +.. ++.|...+.+ ++.+|..|.||++
T Consensus 296 ~~~~~rn~~~~~~n~-~~~-~~~l~~~~~~-~~~~r~~a~wa~~ 336 (337)
T COG1600 296 KKRWQRNALIALGNA-DAT-LPALEALAGD-SPLIREHAAWALS 336 (337)
T ss_pred chhHHHHHHHHhhcc-ccc-hhhHHHhhcc-CchhHHHHHHHhc
Confidence 345667777777777 555 7777776665 7778888877775
No 304
>PF15565 Imm16: Immunity protein 16
Probab=31.14 E-value=2.1e+02 Score=20.76 Aligned_cols=51 Identities=12% Similarity=0.129 Sum_probs=28.7
Q ss_pred HHHHHHHhCCChhHHHHHHHHhCCC-CHHHHHHHHHHHhccCCcchHHHHHH
Q 021051 194 AALFALRNHGGDEAVSAIIDSLGAT-SALLKHEVAYVLGQLQNKAASAALSD 244 (318)
Q Consensus 194 ~a~~~L~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~L~~~~~~~~~~~L~~ 244 (318)
.++..+....+.+.++.|...+.|. +..|....+..+...+....++.+..
T Consensus 20 ~~L~~l~~~~d~~~I~~L~~~F~D~~d~eVmf~lvh~lE~~~~~~~l~~l~~ 71 (106)
T PF15565_consen 20 EALNELAKYPDNDVIDDLCLIFDDETDHEVMFSLVHFLEHFDMEEYLPALAE 71 (106)
T ss_pred HHHHHHHhcCCHhHHHHHHHHhcCccchHHHHHHHHHHHHccHHHHHHHHHH
Confidence 4556666666666666666666543 34555555555555554444444433
No 305
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=30.92 E-value=7.7e+02 Score=27.31 Aligned_cols=91 Identities=23% Similarity=0.183 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhC--CC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC---Cc---------chHHHHHHH
Q 021051 190 YERYAALFALRNH--GG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ---NK---------AASAALSDV 245 (318)
Q Consensus 190 ~~r~~a~~~L~~~--~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~---~~---------~~~~~L~~~ 245 (318)
..|..|..+|.++ |+ ..+++.|+..|.....++-.-.+.+|.++. +. ..+..|...
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~ 445 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAAC 445 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHH
Confidence 4588888888887 22 477788888776665555544555555543 21 122333333
Q ss_pred H-hccCCCHHHHHHHHHHHhccC------------ChhhHHHHHHhhcCC
Q 021051 246 L-RNVNEHPMVRHEAAEALGSIA------------DDQSIGLLKEFAKDP 282 (318)
Q Consensus 246 l-~~~~~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~~~ 282 (318)
. ... ....-.+.+-||.++. -++++.+|+.+|..+
T Consensus 446 al~~~--kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~ 493 (2195)
T KOG2122|consen 446 ALRNK--KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYE 493 (2195)
T ss_pred HHHhc--ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhcccc
Confidence 3 222 3345556666777664 246788888877644
No 306
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.77 E-value=1.1e+02 Score=30.53 Aligned_cols=124 Identities=21% Similarity=0.266 Sum_probs=72.0
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh------hHH-HHHHHHhC----C--CCHHHHHHHHHHHhccCC-----
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGD------EAV-SAIIDSLG----A--TSALLKHEVAYVLGQLQN----- 235 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~------~~~-~~l~~~l~----d--~~~~vr~~a~~~L~~~~~----- 235 (318)
-+..+.+-+...|.+. .|+.|+..++.++.. ..+ ..+...+. + .+|.-+..++.....+..
T Consensus 362 pleYiRRDlEGsDvdT-RRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~ 440 (960)
T KOG1992|consen 362 PLEYIRRDLEGSDVDT-RRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTA 440 (960)
T ss_pred HHHHHHHhcccCCcch-hHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchh
Confidence 4556666666666664 688888888776431 111 11122222 2 244333334333332211
Q ss_pred ----------cchH-----HHHHHHHh-ccCCCHHHHHHHHHHHhccCC-------hhhHHHHHHhhcCCCHHHHHHHHH
Q 021051 236 ----------KAAS-----AALSDVLR-NVNEHPMVRHEAAEALGSIAD-------DQSIGLLKEFAKDPEPIVSQSCEV 292 (318)
Q Consensus 236 ----------~~~~-----~~L~~~l~-~~~~~~~vr~~a~~aL~~~~~-------~~~~~~L~~~l~~~~~~vr~~a~~ 292 (318)
-++. ..+-.+.. +.++.|.++..+++-+-.++. ..++|.|...+..+...|...|+.
T Consensus 441 ~~Gvtstn~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~ 520 (960)
T KOG1992|consen 441 KHGVTSTNELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAI 520 (960)
T ss_pred hcceeeccccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 0111 22222333 234478899999887776653 246888888899999999999999
Q ss_pred HHHhch
Q 021051 293 ALSMLE 298 (318)
Q Consensus 293 aL~~l~ 298 (318)
+++++-
T Consensus 521 aiEkil 526 (960)
T KOG1992|consen 521 AIEKLL 526 (960)
T ss_pred HHHhcc
Confidence 999774
No 307
>PF14961 BROMI: Broad-minded protein
Probab=29.68 E-value=1.9e+02 Score=30.42 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=47.9
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------CChHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQ 77 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 77 (318)
..+-...+.+.|+-.. |-++|..|++.|..... +.....|...|.|+|+.+...+++...+.-
T Consensus 159 ~qe~lq~i~d~ld~~~-P~evR~eAlq~Lc~~p~SDVls~E~W~~L~~~L~~~LsDpD~~is~~~L~f~Ak~f 230 (1296)
T PF14961_consen 159 CQEQLQLIADKLDPGQ-PKEVRLEALQILCSAPPSDVLSCESWSVLRENLTDALSDPDPEISDASLRFHAKMF 230 (1296)
T ss_pred cHHHHHHHHHhcCCCC-chHHHHHHHHHHhcCChhhccccccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 3556667777777555 47999999999988754 345677777889999999999988877643
No 308
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=29.33 E-value=4.9e+02 Score=24.56 Aligned_cols=102 Identities=11% Similarity=0.162 Sum_probs=57.9
Q ss_pred HHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhcc---C------
Q 021051 197 FALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSI---A------ 267 (318)
Q Consensus 197 ~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~---~------ 267 (318)
..|..++.+.....|.+++.-..+..+...+.+|.. ...++.|+.++.. +.++.+...|++.|..+ .
T Consensus 25 ~llkHI~~~~ImDlLLklIs~d~~~~~~~ilewL~~---q~LI~~Li~~L~p-~~~~~~q~naa~~L~aII~is~n~~~~ 100 (475)
T PF04499_consen 25 NLLKHIDTPAIMDLLLKLISTDKPESPTGILEWLAE---QNLIPRLIDLLSP-SYSSDVQSNAADFLKAIIRISRNAPQN 100 (475)
T ss_pred HHHHhcCCcHHHHHHHHHHccCcccchHHHHHHHHH---hCHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhhccccc
Confidence 445556666666667776665555556666666644 4577777777762 33666777666654443 1
Q ss_pred ---------------ChhhHHHHHH-hhc-CCCHHHHHHHHHHHHhchhhhc
Q 021051 268 ---------------DDQSIGLLKE-FAK-DPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 268 ---------------~~~~~~~L~~-~l~-~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.++.+..|.+ ++. .....+-..+...+.-|+.+++
T Consensus 101 ~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRknns 152 (475)
T PF04499_consen 101 EQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKNNS 152 (475)
T ss_pred cccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhccc
Confidence 2344555555 453 2344444555555666655555
No 309
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=29.00 E-value=2.7e+02 Score=21.43 Aligned_cols=60 Identities=17% Similarity=0.032 Sum_probs=34.1
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ 234 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~ 234 (318)
.+..|+......... ..+......|+++.- -++++.+...+...+..+....+.+|-.++
T Consensus 17 Ylq~LV~efq~tt~~-eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC 86 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNI-EAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLC 86 (173)
T ss_pred HHHHHHHHHHHhccH-HHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhc
Confidence 455555555433221 135555666666532 245566666667777777777777776665
No 310
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=28.99 E-value=5.4e+02 Score=24.89 Aligned_cols=90 Identities=19% Similarity=0.102 Sum_probs=56.3
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------CChHHHHHHhccCCCHHHHHHHHHHHhccCCCC----cHHH
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG------PGPRDALIRATKDSSNLLAHEAAFALGQMQDAE----AIPA 84 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~----~~~~ 84 (318)
+...+.|-+.|-.+++ .++.-|+..++-.+. +.+...|..++.+++..++.+|+--||..-... ....
T Consensus 412 d~gl~~Ldkyly~de~--~~KaGaLLGig~s~~~v~~E~~palalLs~yl~s~s~k~~~aaiLGlg~afsGt~~eevl~l 489 (881)
T COG5110 412 DKGLETLDKYLYADES--YRKAGALLGIGLSGLRVFEERPPALALLSNYLQSSSSKHVIAAILGLGAAFSGTQAEEVLEL 489 (881)
T ss_pred HhhHHHHHHHHhcCcc--cccccceeeeeecccccccccchHHHHHHHhccCCchHHHHHHHhhhHHhhcCCcHHHHHHH
Confidence 4466777778887776 566666655554432 456777778888888889999888887655433 3444
Q ss_pred HHHhhhcCCCCH--HHHHHHHHHHHh
Q 021051 85 LEAVLNDFSLHP--IVRHEAAEALGA 108 (318)
Q Consensus 85 L~~~l~~~~~~~--~vR~~a~~~L~~ 108 (318)
|.++.. +.|. .+-..|..+|+.
T Consensus 490 L~Pi~~--std~pie~~~~asltLg~ 513 (881)
T COG5110 490 LQPIMF--STDSPIEVVFFASLTLGS 513 (881)
T ss_pred hhhhhc--CCCCcHHHHHHHHHhhhh
Confidence 445555 4444 444444445554
No 311
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=27.94 E-value=2.8e+02 Score=21.21 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=17.3
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCC
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQD 78 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 78 (318)
+..+.+..+|.++++.++..|+.++..++.
T Consensus 17 ~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 17 ELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 344445555566666666666666665555
No 312
>PF15565 Imm16: Immunity protein 16
Probab=26.82 E-value=2.5e+02 Score=20.34 Aligned_cols=50 Identities=22% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHhccCCCChHHHHHHhccCC-CHHHHHHHHHHHhccCCCCcHHHHHH
Q 021051 38 ALFSLRNLKGPGPRDALIRATKDS-SNLLAHEAAFALGQMQDAEAIPALEA 87 (318)
Q Consensus 38 A~~~l~~~~~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~~~~~L~~ 87 (318)
++..+....+.+.++.|...+.|. +..|....+..+...+....++.+..
T Consensus 21 ~L~~l~~~~d~~~I~~L~~~F~D~~d~eVmf~lvh~lE~~~~~~~l~~l~~ 71 (106)
T PF15565_consen 21 ALNELAKYPDNDVIDDLCLIFDDETDHEVMFSLVHFLEHFDMEEYLPALAE 71 (106)
T ss_pred HHHHHHhcCCHhHHHHHHHHhcCccchHHHHHHHHHHHHccHHHHHHHHHH
Confidence 444455555555666666666443 34555555555555444333333333
No 313
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=26.21 E-value=64 Score=21.58 Aligned_cols=30 Identities=20% Similarity=0.068 Sum_probs=25.7
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhcc
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNL 45 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~ 45 (318)
..-++++|..+..|..+ ..|..|+++|+.+
T Consensus 37 aGYTi~El~~L~RSsv~--~QR~~al~~L~~I 66 (73)
T PF08620_consen 37 AGYTIQELFHLSRSSVP--SQRCIALQTLGRI 66 (73)
T ss_pred CCcCHHHHHHHHhcCcH--HHHHHHHHHHHHH
Confidence 34589999999999987 9999999999875
No 314
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.97 E-value=5.5e+02 Score=28.19 Aligned_cols=121 Identities=19% Similarity=0.188 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhC-----------CChhHHHHHHHHhCCCCHHHHHHHHHHHhccC-C------cchHHHHHHHHhccCC
Q 021051 190 YERYAALFALRNH-----------GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ-N------KAASAALSDVLRNVNE 251 (318)
Q Consensus 190 ~~r~~a~~~L~~~-----------~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-~------~~~~~~L~~~l~~~~~ 251 (318)
.+|.+++.-+... ..++....+...++|.+..+|..|+.+|..+- . ++-.............
T Consensus 1542 ~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~~~~k~d~~~~~~~s~s~ 1621 (1710)
T KOG1851|consen 1542 RVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQFVSDKRDTTSNILQSKSK 1621 (1710)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhccccccchHhhhhhhhhhhhcch
Confidence 3577776655432 12345555667889998999999999987542 1 1122333333333333
Q ss_pred CHHHHHHHHHHHhccC--C----hhhHHH----HHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhccccc
Q 021051 252 HPMVRHEAAEALGSIA--D----DQSIGL----LKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYLFMQ 312 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~~--~----~~~~~~----L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~~ 312 (318)
+......|+.+||.+- - |.-++- |-.... +...++.++..++.+.+..-+.. |+.+-++
T Consensus 1622 ~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~-e~~~i~~tvkktvseFrrth~D~-W~~~k~~ 1690 (1710)
T KOG1851|consen 1622 DEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFAR-ESAAIKQTVKKTVSEFRRTHADT-WREHKQS 1690 (1710)
T ss_pred HHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcC-CchHHHHHHHHHHHHHHHHhhhh-hhhhhhc
Confidence 5667788889998863 1 222222 222233 34789999999999998888877 7776544
No 315
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=25.31 E-value=8.7e+02 Score=26.10 Aligned_cols=98 Identities=16% Similarity=0.103 Sum_probs=38.8
Q ss_pred CccHHHHHHHHcCCCc--ChHHHHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHh
Q 021051 172 CSSVDMLREVLLGEEK--GMYERYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLR 247 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~--~~~~r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~ 247 (318)
.+....|++++..... -...+..-++--+.+ ..+.++|.++....+=++.--...-..|.++..-.-+..|.-++.
T Consensus 820 ~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL~~ 899 (1639)
T KOG0905|consen 820 IETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELLLP 899 (1639)
T ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhhcc
Confidence 3444556666632211 111233333333333 234555655544333233222333334444433222222222222
Q ss_pred ccCCCHHHHHHHHHHHhccCChh
Q 021051 248 NVNEHPMVRHEAAEALGSIADDQ 270 (318)
Q Consensus 248 ~~~~~~~vr~~a~~aL~~~~~~~ 270 (318)
.-+ |.+||..|++-|+++.+++
T Consensus 900 kfP-DqeVR~~AVqwi~~ls~De 921 (1639)
T KOG0905|consen 900 KFP-DQEVRAHAVQWIARLSNDE 921 (1639)
T ss_pred cCC-cHHHHHHHHHHHHhcCcHH
Confidence 211 4455555555555555544
No 316
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=24.61 E-value=1.6e+02 Score=17.44 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=10.7
Q ss_pred HHHHHHHHhccCCh--hhHHHHHHhh
Q 021051 256 RHEAAEALGSIADD--QSIGLLKEFA 279 (318)
Q Consensus 256 r~~a~~aL~~~~~~--~~~~~L~~~l 279 (318)
...++.||..+|.. ++.+.+.++.
T Consensus 3 ~~d~~~AL~~LGy~~~e~~~av~~~~ 28 (47)
T PF07499_consen 3 LEDALEALISLGYSKAEAQKAVSKLL 28 (47)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 34455555555532 2344444443
No 317
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=24.29 E-value=7.3e+02 Score=24.82 Aligned_cols=75 Identities=12% Similarity=0.025 Sum_probs=38.9
Q ss_pred hhHHHHHHHHhC--CCCHHHHHHHHHHHhccCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhh
Q 021051 205 DEAVSAIIDSLG--ATSALLKHEVAYVLGQLQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFA 279 (318)
Q Consensus 205 ~~~~~~l~~~l~--d~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 279 (318)
+++...+..++. -.+...+...+.+|.+.+. ++++......+...+++......-..+|..+|. .+++....+++
T Consensus 103 ~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~ 181 (694)
T PRK15179 103 DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLS 181 (694)
T ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 344444444442 2244555555555555443 355566666665545556666666666666653 33555555554
No 318
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=23.60 E-value=4.3e+02 Score=22.00 Aligned_cols=32 Identities=22% Similarity=0.104 Sum_probs=21.7
Q ss_pred ccHHHHHHHH-cCCCcChHHHHHHHHHHHhCCChh
Q 021051 173 SSVDMLREVL-LGEEKGMYERYAALFALRNHGGDE 206 (318)
Q Consensus 173 ~~~~~L~~~l-~~~~~~~~~r~~a~~~L~~~~~~~ 206 (318)
..++.+...+ .+.++. .+..+++++..+...+
T Consensus 121 ~ll~~ls~~L~~~~~~~--~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 121 DLLPLLSGCLNQSCDEV--AQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHHHHHhccccHH--HHHHHHHHHHHHHHHh
Confidence 3567777777 454444 4888888888876543
No 319
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=23.46 E-value=4.7e+02 Score=23.36 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=40.8
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccC--------------CcchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQ--------------NKAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--------------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
.....+..++.+++--+|+.++..||.+= +++-+..++.++.|. +..+|.+|....--+
T Consensus 209 ~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 209 RFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHH
Confidence 45556667888899999999999999752 345567777777776 777888877766554
No 320
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=23.36 E-value=4.5e+02 Score=26.93 Aligned_cols=125 Identities=18% Similarity=0.133 Sum_probs=65.6
Q ss_pred hhhHHHHHHhhcCCCCC--HHHHHHHHHHHhccCC---CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhh
Q 021051 15 PEMEKFLCDRLVDPTQP--ISERFRALFSLRNLKG---PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVL 89 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~--~~~r~~A~~~l~~~~~---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 89 (318)
+.-.+.|.++++.+... .+.-...++.+..... |++.+.|.-.++=.+...-...-..|..+.. ..+..-+++|
T Consensus 540 e~~~kqLk~i~~~d~l~el~e~ekd~lW~~R~~~~~~~Pe~L~kLllsvkW~~redvAqmy~LL~~Wp~-l~v~~aleLL 618 (1076)
T KOG0904|consen 540 EKLRKQLKEILARDPLSELTEQEKDLLWHLRHEILKHFPEALPKLLLSVKWNKREDVAQMYYLLKDWPP-LSVELALELL 618 (1076)
T ss_pred chhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHhChHHHHHHHheeeeccHHHHHHHHHHHhhCCC-CCHHHHHHHh
Confidence 44556666666632210 1233345555544321 4455555332221111222222223333333 5666667777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCCCCcHHHHHh---hhccCC---CHHHHHHHHHHHHH
Q 021051 90 NDFSLHPIVRHEAAEALGAIGLESNIPLLKN---SLVSDP---AQEVRETCELALER 140 (318)
Q Consensus 90 ~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~---~l~~d~---~~~vr~~a~~aL~~ 140 (318)
...=+|+.||..|++.|..+.+.+....|.+ .+..++ +.-+|...-+||++
T Consensus 619 d~nypD~~VR~fAV~~L~~Lsdd~l~~YLLqLVQalKyEpylds~L~rFLL~RAL~N 675 (1076)
T KOG0904|consen 619 DCNYPDPNVRAFAVRCLEQLSDDDLLQYLLQLVQALKYEPYLDSALVRFLLKRALRN 675 (1076)
T ss_pred cCCCCcHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhccchhHhHHHHHHHHHHhhc
Confidence 7546899999999999988888776554444 233332 45566666666654
No 321
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=22.69 E-value=7.5e+02 Score=24.40 Aligned_cols=8 Identities=0% Similarity=0.389 Sum_probs=3.4
Q ss_pred hHHHHHHh
Q 021051 271 SIGLLKEF 278 (318)
Q Consensus 271 ~~~~L~~~ 278 (318)
++..+.++
T Consensus 371 A~~~l~~a 378 (656)
T PRK15174 371 AESVFEHY 378 (656)
T ss_pred HHHHHHHH
Confidence 44444443
No 322
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=22.67 E-value=4e+02 Score=26.35 Aligned_cols=93 Identities=11% Similarity=0.134 Sum_probs=61.1
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----hhh--
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----DQS-- 271 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----~~~-- 271 (318)
..++.|...+++.+..++..++..+..+.+ ...+|.|..+.-.. ++..|+..++-+++.+-+ ..+
T Consensus 389 ~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~t-t~~~vkvn~L~c~~~l~q~lD~~~v~d 467 (700)
T KOG2137|consen 389 KILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKT-TNLYVKVNVLPCLAGLIQRLDKAAVLD 467 (700)
T ss_pred HHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcc-cchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 556777777888999999999998876543 23455555554332 378899988888888642 122
Q ss_pred -HHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 272 -IGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 272 -~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
+..+.+..+..++.+..........+..
T Consensus 468 ~~lpi~~~~~~~dp~iv~~~~~i~~~l~~ 496 (700)
T KOG2137|consen 468 ELLPILKCIKTRDPAIVMGFLRIYEALAL 496 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 3334445566777777766666655443
No 323
>PRK14015 pepN aminopeptidase N; Provisional
Probab=22.22 E-value=8.8e+02 Score=25.05 Aligned_cols=173 Identities=16% Similarity=0.068 Sum_probs=0.0
Q ss_pred HHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051 65 LAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144 (318)
Q Consensus 65 vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~ 144 (318)
+|-.++..|.............+...+ ..+..-|.+|+.+|.....+..-..|......-.+..+-..-..++....
T Consensus 684 l~n~~l~~l~~~~~~~~~~~~~~~~~~-a~~mtd~~~al~~l~~~~~~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~-- 760 (875)
T PRK14015 684 LRNVCLSYLAAADDEEAAELAEAQFDQ-ADNMTDRLAALSALVNADLPERDEALADFYDRWKDDPLVMDKWFALQATS-- 760 (875)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHhh-CCCHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCchhhHHHHHHHhCC--
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-------------hHHHHH
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-------------EAVSAI 211 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-------------~~~~~l 211 (318)
..+..+..+.+++.++.-....-...-..+|.+... ..+...
T Consensus 761 -------------------------~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~ 815 (875)
T PRK14015 761 -------------------------PAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQ 815 (875)
T ss_pred -------------------------CCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHH
Q ss_pred HHHhCCCCHHHHHHHHHHHhccCC------cchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 212 IDSLGATSALLKHEVAYVLGQLQN------KAASAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 212 ~~~l~d~~~~vr~~a~~~L~~~~~------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
+-.+...+|.+....+..+..++. .-....|..++..++-+.+|+--+-++|..
T Consensus 816 i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~~~~~~l~~i~~~~~ls~d~~e~~~~~l~~ 875 (875)
T PRK14015 816 ILALDKINPQVAARLATPLIRWRRYDPKRQALMRAALERIAALPNLSKDVREIVSKALAA 875 (875)
T ss_pred HHHhcCcCHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHHHhCcCCCccHHHHHHHHhcC
No 324
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=21.78 E-value=6.1e+02 Score=23.02 Aligned_cols=183 Identities=17% Similarity=0.143 Sum_probs=101.9
Q ss_pred CCHHHHHHHHHHHHhc-CCCCcHHHHHh---------hhccC-CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcc
Q 021051 94 LHPIVRHEAAEALGAI-GLESNIPLLKN---------SLVSD-PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMS 162 (318)
Q Consensus 94 ~~~~vR~~a~~~L~~~-~~~~~~~~L~~---------~l~~d-~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~ 162 (318)
++..||.++.+.+... .++..+..+.+ .+.++ ++..-|..|..-+.++-+...+.
T Consensus 37 ~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~-------------- 102 (371)
T PF14664_consen 37 DSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP-------------- 102 (371)
T ss_pred CcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc--------------
Confidence 4477777777777543 33333332222 23333 34455666666666555111010
Q ss_pred cCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--Ch------hHHHHHHHHhCCCCHHHHHHHHHHHhcc-
Q 021051 163 VDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GD------EAVSAIIDSLGATSALLKHEVAYVLGQL- 233 (318)
Q Consensus 163 ~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~------~~~~~l~~~l~d~~~~vr~~a~~~L~~~- 233 (318)
...+...+..++....+.++.. |..++..|..+. ++ +.+..+.+.+-+....+....+.++-.+
T Consensus 103 -----~~~~~~vvralvaiae~~~D~l--r~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 103 -----KEIPRGVVRALVAIAEHEDDRL--RRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred -----ccCCHHHHHHHHHHHhCCchHH--HHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 0112346788888888877776 999999998773 22 4567777777665444555555555433
Q ss_pred CCc---------chHHHHHHHHhcc-----CCCHHH-H-HHHHHHHhc----c-C-------ChhhHHHHHHhhcCCCHH
Q 021051 234 QNK---------AASAALSDVLRNV-----NEHPMV-R-HEAAEALGS----I-A-------DDQSIGLLKEFAKDPEPI 285 (318)
Q Consensus 234 ~~~---------~~~~~L~~~l~~~-----~~~~~v-r-~~a~~aL~~----~-~-------~~~~~~~L~~~l~~~~~~ 285 (318)
..| .-++.+..-+.+. +++.++ | ..+..++.. . | +...+..|+..+.-+.+.
T Consensus 176 d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ 255 (371)
T PF14664_consen 176 DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPE 255 (371)
T ss_pred CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHH
Confidence 222 2244444444433 123322 2 222222222 1 1 226888899999999999
Q ss_pred HHHHHHHHHHhc
Q 021051 286 VSQSCEVALSML 297 (318)
Q Consensus 286 vr~~a~~aL~~l 297 (318)
+|..+...+-.+
T Consensus 256 ir~~Ildll~dl 267 (371)
T PF14664_consen 256 IRKAILDLLFDL 267 (371)
T ss_pred HHHHHHHHHHHH
Confidence 999998887754
No 325
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=21.75 E-value=3.8e+02 Score=20.65 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=13.2
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
+++..+..+..+ |..+...++-+|.++.
T Consensus 59 vLdlFvdsl~e~--ne~LvefgIgglCNlC 86 (173)
T KOG4646|consen 59 VLDLFVDSLEEQ--NELLVEFGIGGLCNLC 86 (173)
T ss_pred HHHHHHHHhhcc--cHHHHHHhHHHHHhhc
Confidence 334444444443 4555555555555543
No 326
>KOG4337 consensus Microsomal triglyceride transfer protein [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.48 E-value=8e+02 Score=24.29 Aligned_cols=219 Identities=18% Similarity=0.115 Sum_probs=102.4
Q ss_pred HhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhc----CCCCHHHHHHHHHHHHhcC--CCCcHHHHHhhhcc---CC
Q 021051 56 RATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLND----FSLHPIVRHEAAEALGAIG--LESNIPLLKNSLVS---DP 126 (318)
Q Consensus 56 ~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~----~~~~~~vR~~a~~~L~~~~--~~~~~~~L~~~l~~---d~ 126 (318)
+.|..++..|--..+.++|..+..+++.....+|.. .+.+......-+..|+... +++.+..|...+-. .+
T Consensus 351 ~~l~~En~eVLpqlvdalg~vqT~ds~~a~~dfL~~~S~sss~~~~l~e~~ly~lg~a~hp~ee~i~~l~~k~~~~Si~s 430 (896)
T KOG4337|consen 351 AALQYENDEVLPQLVDALGGVQTADSITAADDFLFGISQSSSNNEKLHEQLLYWLGSADHPSEETIATLLNKRCEASISS 430 (896)
T ss_pred HHHHhhhhhHHHHHHHHhccccchhhHHHHHHHHhccccccchhHHHHHHHHHHhhccCCCcHHHHHHHHHHHhhhhhhh
Confidence 334445566666666677766665666666666551 1122455566666666543 33445554442211 12
Q ss_pred CHHHHHHHHHHHHHHHhhhccCcccc-ccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh
Q 021051 127 AQEVRETCELALERIEKLKASGSDGS-SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD 205 (318)
Q Consensus 127 ~~~vr~~a~~aL~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~ 205 (318)
...+|.......+.+-+ +.....+. ..+ ++.-..++..+...++.+ .-..-+.++.+.-.+
T Consensus 431 ~~~~re~v~~iv~tlir-~~~~~gve~~~l----------------~e~~~~ilgglt~aek~~-~s~~y~~Al~N~~lP 492 (896)
T KOG4337|consen 431 LNSCREGVETIVNTLIR-DLTAGGVEVRVL----------------EELENIILGGLTFAEKFI-ESEDYQKALLNVILP 492 (896)
T ss_pred hHHHhhhHHHHHHHHHH-HhhCCCcccHHH----------------HHHHHHHhccchhccccc-chHHHHHHHHhccCh
Confidence 23355555554444431 11111100 000 011112222222222221 133445666666666
Q ss_pred hHHHHHHHHh-CCCCHHHHHHHHHHHhccCCc-----------chHHHHHHHHhccCCCHHHHHHHHHHHhccC-ChhhH
Q 021051 206 EAVSAIIDSL-GATSALLKHEVAYVLGQLQNK-----------AASAALSDVLRNVNEHPMVRHEAAEALGSIA-DDQSI 272 (318)
Q Consensus 206 ~~~~~l~~~l-~d~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-~~~~~ 272 (318)
.+++.|.+.- .-.-|+....|..+|..+.-+ .....+.++..+ .+|..|+..+.+.. +-.-+
T Consensus 493 a~i~~Lle~a~sGe~p~~s~~atsAl~~f~l~si~~~~kk~~~~i~hq~~k~f~~-----t~rTlA~dIiL~~~P~~~~v 567 (896)
T KOG4337|consen 493 AAIKNLLETAVSGEKPEQSMRATSALAEFFLRSICQTKKKIGAPITHQLIKLFRN-----TTRTLAIDIILKCVPDHQNV 567 (896)
T ss_pred hhHHHHHHHHhccCCcchhHHHHHHHHhcCchhhhHHHHHhcchHHHHHHHHHhc-----chhHHHHHHHHhcCccHHHH
Confidence 7777766644 334555666677777665321 122233333332 26666666665543 22233
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 273 GLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 273 ~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
.-+.-.+...+.+.......++..+
T Consensus 568 ~n~ll~l~~~dqE~~~Y~l~~i~ml 592 (896)
T KOG4337|consen 568 ANLLLTLNPDDQEKWHYLLKAIEML 592 (896)
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHH
Confidence 3344455555666666666666643
No 327
>KOG1932 consensus TATA binding protein associated factor [Transcription]
Probab=21.22 E-value=1e+03 Score=25.29 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=85.1
Q ss_pred HhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCC--CHHHHHHHHHHHHHHHhhhccCcc
Q 021051 73 LGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDP--AQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 73 L~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~--~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
|.++...+..-.....|. +|.|..-+..|++.|...........|...+ .|. -..+|..|+.+|++... . ...
T Consensus 635 i~~i~i~QPd~Mw~~QLr-~drDVvAQ~EAI~~le~~p~~~s~~~L~rtl-~der~FyrIR~~Aa~aLak~a~-~--~~d 709 (1180)
T KOG1932|consen 635 IREIHIEQPDFMWVYQLR-QDRDVVAQMEAIESLEALPSTASRSALTRTL-EDERYFYRIRIAAAFALAKTAN-G--ESD 709 (1180)
T ss_pred hhhhhccCchHHHHHHHH-hcccHHHHHHHHHHHHcCCcchhHHHHHHHH-hhcchhhHHHHHHHHHHHHhhc-c--ccc
Confidence 344444444555566664 3889999999999999998888888888845 344 36899999999999871 1 000
Q ss_pred ccccccCCCCcccCCCCCCCCCccHHHHHHHHc----CC------------CcChHHHHHHHHHHHhCCC------hhHH
Q 021051 151 GSSMTERSPFMSVDPAAPASSCSSVDMLREVLL----GE------------EKGMYERYAALFALRNHGG------DEAV 208 (318)
Q Consensus 151 ~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~----~~------------~~~~~~r~~a~~~L~~~~~------~~~~ 208 (318)
-.+.+.|+.+.. .. -..++++.+.-.+++.+.+ .++.
T Consensus 710 ---------------------wtG~~~Li~~F~~~fc~k~stIpKsNnF~~~q~Yfvq~~iP~a~a~lR~~~g~cp~~V~ 768 (1180)
T KOG1932|consen 710 ---------------------WTGPPHLIQFFRKKFCSKDSTIPKSNNFSNFQEYFVQCAIPVAFASLRGREGKCPKEVK 768 (1180)
T ss_pred ---------------------ccChHHHHHHHHHHhccccCCCCCcCccccHHHHHHHHhhHHHHHHhccccCCChHHHH
Confidence 001222322221 10 0124456666666766643 4667
Q ss_pred HHHHHHhC--C------CCHHHHHHHHHHHhccC
Q 021051 209 SAIIDSLG--A------TSALLKHEVAYVLGQLQ 234 (318)
Q Consensus 209 ~~l~~~l~--d------~~~~vr~~a~~~L~~~~ 234 (318)
+.|+.+|+ | +|...+...+.+|+..-
T Consensus 769 ~FlLdLlkyNDNs~N~YSD~~y~a~LIesl~~~l 802 (1180)
T KOG1932|consen 769 AFLLDLLKYNDNSFNSYSDDYYRASLIESLVESL 802 (1180)
T ss_pred HHHHHHhhcccCCCCccchHHHHHHHHHHHhhhc
Confidence 77777773 3 25667778888888754
No 328
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=21.22 E-value=1e+03 Score=25.56 Aligned_cols=129 Identities=16% Similarity=0.077 Sum_probs=81.2
Q ss_pred CChhhHHHHHHhhcCCCCCH--HHHHHHHHHHhc--cCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHh
Q 021051 13 SSPEMEKFLCDRLVDPTQPI--SERFRALFSLRN--LKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAV 88 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~--~~r~~A~~~l~~--~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~ 88 (318)
+..+..+.|.+++......| ..+..-++.=.- ...+.+.+.+.....+.++..-...-..|-++..-.-...|.-+
T Consensus 818 l~~e~q~~Lldl~qkq~~~~ls~edk~~lWekR~yc~~~p~aLPlVL~Sap~W~~~~l~~~y~lL~~Wa~l~Pl~ALelL 897 (1639)
T KOG0905|consen 818 LDIETQEKLLDLIQKQSTLTLSTEDKDLLWEKRLYCTNEPNALPLVLASAPSWDWGNLMDVYQLLHQWAPLRPLIALELL 897 (1639)
T ss_pred hhHHHHHHHHHHHhhccccccchhhHHHHHHHhhhhcCCCchhHHHHhcCCCCchhhHHHHHHHHHhccccCHHHHHHhh
Confidence 45667778888874333211 233333333222 24478888888887777766555555556666553444444444
Q ss_pred hhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhc---cCCCHHHHHHHHHHHHHHH
Q 021051 89 LNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLV---SDPAQEVRETCELALERIE 142 (318)
Q Consensus 89 l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~---~d~~~~vr~~a~~aL~~~~ 142 (318)
+. .=+|..||..|+..|+++.+.. .+|.|++++. ...++-||...-+++..+.
T Consensus 898 ~~-kfPDqeVR~~AVqwi~~ls~DeL~d~LPQlVQALK~E~yl~S~Lv~FLL~rsl~sl~ 956 (1639)
T KOG0905|consen 898 LP-KFPDQEVRAHAVQWIARLSNDELLDYLPQLVQALKFELYLKSALVQFLLSRSLVSLQ 956 (1639)
T ss_pred cc-cCCcHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHhcchH
Confidence 44 3588999999999999998754 4667777553 2357788877777777654
No 329
>PRK09238 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated
Probab=21.09 E-value=5.4e+02 Score=26.24 Aligned_cols=106 Identities=24% Similarity=0.174 Sum_probs=65.1
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhC---CChhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHHH
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNH---GGDEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAAL 242 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~---~~~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~L 242 (318)
+....|+++|+++...- -...+..|.+- |.+++. ..|.+..+ ....-.+..|+..||.|.....++.|
T Consensus 25 ~~~~~~~~~l~~~~~~~--~~~~~~l~~~~v~pgv~~aa~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~~~~~l 102 (835)
T PRK09238 25 EQTAELVELLKNPPAGE--EEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLISPEKAVELLGTMLGGYNVEPL 102 (835)
T ss_pred HHHHHHHHHhcCCCCcc--HHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCCCCcCcCHHHHHHHHhhccCCCcHHHH
Confidence 44788888898775541 22255555543 222221 22222222 22334468899999999888889999
Q ss_pred HHHHhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhcCCCH
Q 021051 243 SDVLRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAKDPEP 284 (318)
Q Consensus 243 ~~~l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~~~~~ 284 (318)
++++.+ ..+...|+++|...-- -++..-+.++.+..+.
T Consensus 103 ~~~l~~----~~~~~~a~~~l~~~~l~~~~~~~~~~~~~~gn~ 141 (835)
T PRK09238 103 IDLLDD----AELAPEAAEALKHTLLVFDAFHDVAEKAKAGNA 141 (835)
T ss_pred HHHhcC----HHHHHHHHHHHhccEEeeecHHHHHHHHHccCH
Confidence 999974 4688899999887531 1235555565555453
No 330
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=20.93 E-value=3.8e+02 Score=20.37 Aligned_cols=25 Identities=16% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHhhcC---CCHHHHHHHHHHHHhchh
Q 021051 275 LKEFAKD---PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 275 L~~~l~~---~~~~vr~~a~~aL~~l~~ 299 (318)
|.+++.. ....|+..+..-+..+..
T Consensus 88 L~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 88 LVKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 5554432 234666666666665553
No 331
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=20.89 E-value=3.5e+02 Score=28.94 Aligned_cols=91 Identities=21% Similarity=0.238 Sum_probs=59.5
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCCC-------CcHHHHHHhhhcCCCCHHHHHHH-HHHHHhc------CC---
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQDA-------EAIPALEAVLNDFSLHPIVRHEA-AEALGAI------GL--- 111 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-------~~~~~L~~~l~~~~~~~~vR~~a-~~~L~~~------~~--- 111 (318)
...+.+...+.+.+..+|..++++++.+... ..+..+..++. +.+..+|+.+ ...+..+ +.
T Consensus 816 ~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~--~~~~~~~r~~a~e~~~~l~~~l~~~l~~~ 893 (1549)
T KOG0392|consen 816 SLLPRLFFFVRSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLG--DLDKFVRRQGADELIELLDAVLMVGLVPY 893 (1549)
T ss_pred hhhhHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--chhhHhhhhhHHHHHHHHHHhhccccccc
Confidence 3455566666889999999999999887643 23455566666 5555555443 3333322 11
Q ss_pred -CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 112 -ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 112 -~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+-.++.|.. ...|....||.++-.+++.+-
T Consensus 894 ~~Llv~pllr-~msd~~d~vR~aat~~fa~li 924 (1549)
T KOG0392|consen 894 NPLLVVPLLR-RMSDQIDSVREAATKVFAKLI 924 (1549)
T ss_pred ceeehhhhhc-ccccchHHHHHHHHHHHHHHh
Confidence 224555666 457888999999999998865
No 332
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=20.67 E-value=3.5e+02 Score=19.75 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhccCCcchHHHHHHHHh
Q 021051 220 ALLKHEVAYVLGQLQNKAASAALSDVLR 247 (318)
Q Consensus 220 ~~vr~~a~~~L~~~~~~~~~~~L~~~l~ 247 (318)
...|..|+-++.-..+..+.+.|.+.+-
T Consensus 67 e~~R~~alval~v~~P~~~~~~L~~~f~ 94 (114)
T PF10193_consen 67 EELRQNALVALVVAAPEKVAPYLTEEFF 94 (114)
T ss_dssp THHHHHHHHHHHHHSGGGHHH-HHHHHT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3455555555544444455555554443
No 333
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=20.58 E-value=4.7e+02 Score=26.76 Aligned_cols=27 Identities=30% Similarity=0.439 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHhccCChhhHHHHHHh
Q 021051 252 HPMVRHEAAEALGSIADDQSIGLLKEF 278 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~~~~~~~~~L~~~ 278 (318)
|+.||.-|++.|-.+.+++...+|.++
T Consensus 624 D~~VR~fAV~~L~~Lsdd~l~~YLLqL 650 (1076)
T KOG0904|consen 624 DPNVRAFAVRCLEQLSDDDLLQYLLQL 650 (1076)
T ss_pred cHHHHHHHHHHHHhcChhHHHHHHHHH
Confidence 667777777777666666666665554
No 334
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=20.56 E-value=3e+02 Score=19.02 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=28.7
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCCh-hhHHHHHHhhcC----CCHHHHHHHHHHHHhchh
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIADD-QSIGLLKEFAKD----PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~~----~~~~vr~~a~~aL~~l~~ 299 (318)
..|...+...++|+..|...+..+..-|+. ++++.|..++.. .+...|...+..+..++.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 334444443344556666555555555542 355555555432 234555555555555544
No 335
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=20.46 E-value=9.5e+02 Score=24.77 Aligned_cols=46 Identities=20% Similarity=0.055 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 97 IVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 97 ~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+|..|+.-|...++++........+.+..+-.-|.+|..+|....
T Consensus 673 ~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~~mtd~~~al~~l~~~~ 718 (863)
T TIGR02414 673 ALRNACLSYLSAADDAEIRNLALEQFKSADNMTDRLAALSALVHFE 718 (863)
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHhCCCHHHHHHHHHHHhcCC
Confidence 4455666666666666666666665666667777888887777543
No 336
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=20.24 E-value=4.3e+02 Score=20.64 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=18.5
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG 47 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~ 47 (318)
.+..+..+|.++++ ..|+.++..+....+
T Consensus 26 l~~ri~~LL~s~~~--~~rw~G~~Ll~~~~~ 54 (165)
T PF08167_consen 26 LVTRINSLLQSKSA--YSRWAGLCLLKVTVE 54 (165)
T ss_pred HHHHHHHHhCCCCh--hhHHHHHHHHHHHHH
Confidence 44456667777766 677777777655433
Done!