Query 021051
Match_columns 318
No_of_seqs 164 out of 1442
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 12:02:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oyz_A Hypothetical protein YI 100.0 2E-27 6.8E-32 204.9 21.5 245 14-297 21-280 (280)
2 3ltm_A Alpha-REP4; protein eng 99.9 1E-24 3.5E-29 180.0 21.1 126 174-303 82-207 (211)
3 1oyz_A Hypothetical protein YI 99.9 2.1E-24 7E-29 186.0 20.3 226 47-302 21-253 (280)
4 3ltj_A Alpharep-4; protein eng 99.9 3.3E-23 1.1E-27 169.6 20.2 184 50-299 15-198 (201)
5 3ltj_A Alpharep-4; protein eng 99.9 6.3E-23 2.2E-27 167.9 19.7 188 12-234 10-197 (201)
6 3ltm_A Alpha-REP4; protein eng 99.9 8E-23 2.7E-27 168.6 19.1 194 41-269 11-204 (211)
7 2jdq_A Importin alpha-1 subuni 99.8 7.2E-19 2.5E-23 160.9 24.3 259 17-300 21-348 (450)
8 2jdq_A Importin alpha-1 subuni 99.8 1E-17 3.4E-22 153.3 25.0 263 16-302 64-393 (450)
9 1wa5_B Importin alpha subunit; 99.8 4E-18 1.4E-22 159.6 22.8 261 16-302 87-415 (530)
10 1wa5_B Importin alpha subunit; 99.8 2.8E-17 9.7E-22 153.8 25.6 262 16-302 130-460 (530)
11 4b8j_A Importin subunit alpha- 99.8 1.9E-17 6.4E-22 154.9 22.7 270 15-309 73-410 (528)
12 4b8j_A Importin subunit alpha- 99.8 2.2E-18 7.4E-23 161.3 15.9 262 16-301 117-445 (528)
13 4ady_A RPN2, 26S proteasome re 99.8 3.9E-17 1.3E-21 157.4 21.5 264 33-303 373-680 (963)
14 3ul1_B Importin subunit alpha- 99.7 4.5E-17 1.5E-21 151.7 16.9 279 16-317 100-450 (510)
15 3tpo_A Importin subunit alpha- 99.7 1.2E-16 4.1E-21 149.5 18.9 281 15-318 118-470 (529)
16 1b3u_A Protein (protein phosph 99.7 1.3E-17 4.3E-22 157.6 12.3 122 173-298 441-586 (588)
17 3ul1_B Importin subunit alpha- 99.7 8.3E-17 2.8E-21 149.9 17.6 267 16-309 57-397 (510)
18 1b3u_A Protein (protein phosph 99.7 2.4E-17 8.2E-22 155.7 13.5 260 16-300 164-471 (588)
19 3tpo_A Importin subunit alpha- 99.7 5.2E-16 1.8E-20 145.2 17.9 267 16-309 76-416 (529)
20 3now_A UNC-45 protein, SD10334 99.7 8.7E-16 3E-20 147.7 18.0 264 16-302 377-740 (810)
21 4hxt_A De novo protein OR329; 99.7 2.2E-14 7.4E-19 120.6 22.3 199 51-304 4-246 (252)
22 1te4_A Conserved protein MTH18 99.6 3.5E-16 1.2E-20 118.7 6.0 120 173-297 12-131 (131)
23 4fdd_A Transportin-1; heat rep 99.6 3E-14 1E-18 140.6 20.1 112 191-304 337-476 (852)
24 1jdh_A Beta-catenin; beta-cate 99.6 2.3E-14 7.8E-19 133.7 18.1 261 16-297 185-528 (529)
25 4ady_A RPN2, 26S proteasome re 99.6 5.8E-14 2E-18 135.6 20.1 258 15-300 428-720 (963)
26 3now_A UNC-45 protein, SD10334 99.6 2.8E-14 9.6E-19 137.3 17.3 261 14-299 419-782 (810)
27 1te4_A Conserved protein MTH18 99.6 2.7E-16 9.2E-21 119.4 2.4 122 13-140 9-130 (131)
28 2z6g_A B-catenin; FULL-length, 99.6 9.5E-14 3.3E-18 135.5 20.6 279 15-301 149-520 (780)
29 4fdd_A Transportin-1; heat rep 99.6 6E-14 2.1E-18 138.5 18.9 259 17-302 91-432 (852)
30 2vgl_B AP-2 complex subunit be 99.6 1.9E-13 6.3E-18 129.5 21.5 270 19-300 89-420 (591)
31 1jdh_A Beta-catenin; beta-cate 99.6 6.8E-13 2.3E-17 123.7 24.7 265 15-302 58-388 (529)
32 4hxt_A De novo protein OR329; 99.6 5.9E-13 2E-17 111.8 21.1 194 17-267 3-240 (252)
33 2vgl_B AP-2 complex subunit be 99.6 1.9E-13 6.4E-18 129.5 19.1 258 15-302 12-314 (591)
34 4db8_A Armadillo-repeat protei 99.5 2.3E-13 7.8E-18 114.6 17.2 217 16-298 12-250 (252)
35 2z6h_A Catenin beta-1, beta-ca 99.5 1.3E-12 4.3E-17 125.1 24.3 265 15-302 55-385 (644)
36 2z6g_A B-catenin; FULL-length, 99.5 7.1E-14 2.4E-18 136.4 15.5 268 15-302 317-666 (780)
37 2z6h_A Catenin beta-1, beta-ca 99.5 3E-13 1E-17 129.5 18.0 263 13-300 11-337 (644)
38 1w63_A Adapter-related protein 99.5 6.1E-13 2.1E-17 126.6 19.4 122 17-142 108-262 (618)
39 4db8_A Armadillo-repeat protei 99.5 1E-12 3.4E-17 110.7 17.0 176 48-267 53-250 (252)
40 1lrv_A LRV, leucine-rich repea 99.5 4.6E-15 1.6E-19 123.6 1.2 186 23-295 57-242 (244)
41 1ibr_B P95, importin beta-1 su 99.5 1.8E-12 6.3E-17 118.4 18.2 258 18-303 92-441 (462)
42 3l6x_A Catenin delta-1; cateni 99.4 3.4E-11 1.2E-15 112.2 24.1 268 12-300 44-433 (584)
43 1xm9_A Plakophilin 1; armadill 99.4 1.1E-11 3.9E-16 113.6 20.2 260 17-301 3-408 (457)
44 4db6_A Armadillo repeat protei 99.4 8.4E-12 2.9E-16 102.0 16.3 89 208-298 98-208 (210)
45 4db6_A Armadillo repeat protei 99.4 2.4E-11 8.2E-16 99.3 17.6 164 49-267 12-208 (210)
46 1w63_A Adapter-related protein 99.4 2.2E-11 7.5E-16 115.8 19.4 275 19-300 73-415 (618)
47 3nmz_A APC variant protein; pr 99.4 2.9E-12 1E-16 116.6 12.5 269 15-304 69-455 (458)
48 1xm9_A Plakophilin 1; armadill 99.3 2.3E-11 7.8E-16 111.6 16.1 230 50-301 3-362 (457)
49 3nmw_A APC variant protein; AR 99.3 5.2E-11 1.8E-15 105.2 16.3 238 34-309 48-343 (354)
50 3l6x_A Catenin delta-1; cateni 99.3 2.1E-10 7.3E-15 106.9 20.7 279 16-298 90-475 (584)
51 1lrv_A LRV, leucine-rich repea 99.3 6.5E-13 2.2E-17 110.6 0.8 166 20-265 78-243 (244)
52 1ibr_B P95, importin beta-1 su 99.3 3.1E-10 1.1E-14 103.6 18.8 243 14-267 126-436 (462)
53 1qgr_A Protein (importin beta 99.3 2.6E-10 8.8E-15 112.5 19.0 274 14-300 126-480 (876)
54 2bpt_A Importin beta-1 subunit 99.2 5.2E-10 1.8E-14 110.1 20.4 276 15-300 133-483 (861)
55 1qgr_A Protein (importin beta 99.2 2.6E-10 8.8E-15 112.5 15.9 259 19-302 93-440 (876)
56 2bpt_A Importin beta-1 subunit 99.2 7.1E-10 2.4E-14 109.2 18.4 258 18-302 97-443 (861)
57 2vgl_A Adaptor protein complex 99.1 2.3E-09 7.9E-14 101.8 17.3 274 18-299 76-433 (621)
58 3nmz_A APC variant protein; pr 99.1 1.5E-09 5E-14 98.9 13.2 211 37-267 167-449 (458)
59 1u6g_C TIP120 protein, CAND1; 99.0 1.6E-09 5.4E-14 111.0 13.9 279 14-301 46-465 (1230)
60 1xqr_A HSPBP1 protein; armadil 99.0 1.2E-08 4.1E-13 87.7 15.5 61 80-142 81-153 (296)
61 1u6g_C TIP120 protein, CAND1; 99.0 3.1E-09 1.1E-13 108.8 13.3 200 83-300 51-285 (1230)
62 2qk2_A LP04448P; mini spindles 99.0 4.3E-09 1.5E-13 88.0 11.9 189 83-295 18-232 (242)
63 3tjz_B Coatomer subunit gamma; 99.0 2.1E-08 7.1E-13 87.8 16.5 245 20-297 72-351 (355)
64 2vgl_A Adaptor protein complex 99.0 7.9E-08 2.7E-12 91.3 21.2 279 16-301 35-400 (621)
65 3nmw_A APC variant protein; AR 98.9 2E-08 6.8E-13 88.6 14.4 202 15-267 72-333 (354)
66 3opb_A SWI5-dependent HO expre 98.9 2.9E-07 1E-11 87.6 21.5 202 78-299 455-728 (778)
67 3opb_A SWI5-dependent HO expre 98.8 2.5E-07 8.7E-12 88.0 19.7 259 15-299 295-683 (778)
68 1xqr_A HSPBP1 protein; armadil 98.8 7.1E-08 2.4E-12 82.9 13.3 136 113-269 81-239 (296)
69 3tjz_B Coatomer subunit gamma; 98.8 1.7E-07 5.9E-12 82.0 14.6 223 51-302 70-319 (355)
70 2qk1_A Protein STU2; STU2P, XM 98.7 1.5E-07 5.3E-12 78.8 13.1 172 84-278 20-234 (249)
71 2qk2_A LP04448P; mini spindles 98.7 2.4E-07 8.1E-12 77.3 13.6 163 117-302 19-208 (242)
72 2db0_A 253AA long hypothetical 98.6 1.6E-06 5.6E-11 67.1 15.0 196 80-303 32-250 (253)
73 2db0_A 253AA long hypothetical 98.6 7.6E-07 2.6E-11 69.0 11.4 88 175-266 146-244 (253)
74 1lsh_A Lipovitellin (LV-1N, LV 98.5 1.5E-05 5E-10 80.1 22.9 238 49-304 326-581 (1056)
75 2qk1_A Protein STU2; STU2P, XM 98.5 1.3E-06 4.5E-11 73.1 11.1 180 20-244 20-233 (249)
76 3b2a_A TON_1937, putative unch 98.4 7.5E-06 2.6E-10 66.0 12.7 165 113-299 33-218 (265)
77 3tt9_A Plakophilin-2; cell adh 98.2 8.2E-06 2.8E-10 67.2 10.2 30 112-142 51-80 (233)
78 3b2a_A TON_1937, putative unch 98.1 2.6E-05 8.9E-10 62.9 11.1 124 14-142 31-178 (265)
79 3l9t_A Putative uncharacterize 98.1 3.6E-05 1.2E-09 62.5 11.0 124 176-303 74-211 (240)
80 2iw3_A Elongation factor 3A; a 97.8 0.00069 2.4E-08 66.7 17.4 254 18-301 16-326 (986)
81 3oc3_A Helicase MOT1, MOT1; re 97.8 0.00056 1.9E-08 62.3 14.6 238 17-295 175-432 (800)
82 2iw3_A Elongation factor 3A; a 97.8 0.00097 3.3E-08 65.7 17.4 221 14-266 52-322 (986)
83 3l9t_A Putative uncharacterize 97.7 0.00024 8.3E-09 57.7 10.5 121 18-142 72-206 (240)
84 3tt9_A Plakophilin-2; cell adh 97.6 0.00015 5.2E-09 59.6 7.2 94 173-267 8-123 (233)
85 4ffb_C Protein STU2; tubulin f 97.5 0.0016 5.6E-08 55.0 12.3 197 85-300 14-247 (278)
86 3grl_A General vesicular trans 97.4 0.012 4E-07 55.1 17.8 270 12-302 17-397 (651)
87 3oc3_A Helicase MOT1, MOT1; re 97.2 0.0055 1.9E-07 56.0 12.9 208 50-298 175-403 (800)
88 2of3_A ZYG-9; multifunctional 97.0 0.0029 1E-07 52.8 9.0 125 124-266 97-234 (266)
89 1lsh_A Lipovitellin (LV-1N, LV 97.0 0.0039 1.3E-07 62.7 11.0 124 17-142 441-575 (1056)
90 4ffb_C Protein STU2; tubulin f 96.9 0.011 3.7E-07 49.8 11.7 116 21-141 14-166 (278)
91 3grl_A General vesicular trans 96.6 0.014 4.8E-07 54.5 10.6 98 203-302 119-244 (651)
92 2of3_A ZYG-9; multifunctional 96.5 0.0087 3E-07 49.9 7.9 110 27-141 98-234 (266)
93 1wa5_C Importin alpha RE-expor 96.4 0.027 9.2E-07 56.1 12.3 212 64-298 376-669 (960)
94 1wa5_C Importin alpha RE-expor 96.3 0.029 1E-06 55.9 11.8 108 32-142 375-524 (960)
95 3ibv_A Exportin-T; karyopherin 96.0 0.17 5.7E-06 50.6 15.5 107 196-304 422-571 (980)
96 2b6c_A Hypothetical protein EF 95.6 0.31 1E-05 39.4 13.1 130 176-309 58-198 (220)
97 3jxy_A Alkylpurine DNA glycosy 95.4 0.63 2.2E-05 37.8 14.3 124 177-304 65-200 (232)
98 4gmo_A Putative uncharacterize 94.8 0.13 4.6E-06 49.1 9.9 55 85-142 39-104 (684)
99 4hat_C Exportin-1; heat repeat 94.8 0.14 4.9E-06 51.2 10.3 111 194-304 435-574 (1023)
100 2x19_B Importin-13; nuclear tr 94.2 2 6.9E-05 42.5 17.2 123 59-202 459-597 (963)
101 2x1g_F Cadmus; transport prote 93.8 0.9 3.1E-05 45.1 13.8 116 94-233 476-613 (971)
102 2x1g_F Cadmus; transport prote 93.4 0.36 1.2E-05 48.0 10.1 120 61-202 476-613 (971)
103 4gmo_A Putative uncharacterize 93.3 0.37 1.2E-05 46.1 9.6 126 175-302 36-217 (684)
104 2x19_B Importin-13; nuclear tr 93.3 2.4 8.2E-05 41.9 15.8 186 93-299 36-268 (963)
105 2b6c_A Hypothetical protein EF 93.2 0.93 3.2E-05 36.5 10.6 120 19-142 58-187 (220)
106 3u0r_A Apoptosis inhibitor 5; 92.7 0.27 9.4E-06 44.1 7.1 33 13-47 62-94 (507)
107 3jxy_A Alkylpurine DNA glycosy 91.9 1.5 5.2E-05 35.5 10.4 120 19-142 64-194 (232)
108 4hat_C Exportin-1; heat repeat 91.8 0.19 6.6E-06 50.3 5.7 122 19-142 454-617 (1023)
109 3o2t_A Symplekin; heat repeat, 91.7 0.95 3.3E-05 39.7 9.3 65 238-302 226-304 (386)
110 3u0r_A Apoptosis inhibitor 5; 91.2 2.4 8.2E-05 38.1 11.4 104 190-295 43-159 (507)
111 3gs3_A Symplekin, LD45768P; he 91.2 1.5 5.2E-05 36.2 9.6 58 81-141 54-117 (257)
112 3m1i_C Exportin-1; heat repeat 90.3 1.2 4.2E-05 44.7 9.9 110 195-304 436-574 (1049)
113 3gjx_A Exportin-1; transport, 89.6 8.2 0.00028 38.8 15.0 126 13-142 25-177 (1073)
114 3m1i_C Exportin-1; heat repeat 88.0 3.8 0.00013 41.1 11.5 92 204-299 136-263 (1049)
115 3o2t_A Symplekin; heat repeat, 87.5 5.9 0.0002 34.7 11.0 75 33-109 40-127 (386)
116 2i9c_A Hypothetical protein RP 87.1 0.34 1.2E-05 34.9 2.4 61 238-300 58-118 (123)
117 3gjx_A Exportin-1; transport, 85.9 4.5 0.00015 40.7 10.5 110 195-304 462-600 (1073)
118 3a6p_A Exportin-5; exportin-5, 85.5 11 0.00037 38.5 13.4 46 252-299 220-276 (1204)
119 3gs3_A Symplekin, LD45768P; he 84.8 8.4 0.00029 31.7 10.1 103 33-142 30-146 (257)
120 3ibv_A Exportin-T; karyopherin 83.7 3.1 0.00011 41.5 8.3 106 71-202 423-564 (980)
121 3ut4_A CTHE_2751, putative unc 83.1 5.5 0.00019 29.1 7.3 56 174-232 32-87 (134)
122 1z5h_A Tricorn protease intera 79.2 28 0.00097 33.6 13.1 169 12-215 487-675 (780)
123 3ldz_A STAM-1, signal transduc 76.5 13 0.00043 27.4 7.7 45 30-74 21-67 (140)
124 3zyq_A Hepatocyte growth facto 76.4 16 0.00056 29.3 8.9 93 17-110 8-117 (226)
125 3a6p_A Exportin-5; exportin-5, 76.3 71 0.0024 32.5 15.6 123 18-142 13-161 (1204)
126 1x5b_A Signal transducing adap 76.1 16 0.00055 27.6 8.3 79 29-108 30-122 (163)
127 3g2s_A C-terminal fragment of 75.9 20 0.00068 26.7 8.6 58 17-74 11-73 (149)
128 1t06_A Hypothetical protein; s 74.3 25 0.00086 28.3 9.6 84 217-303 89-184 (235)
129 1juq_A ADP-ribosylation factor 70.5 27 0.00091 26.6 8.4 94 17-110 13-127 (171)
130 3zyq_A Hepatocyte growth facto 67.7 29 0.00098 27.8 8.5 91 174-265 8-115 (226)
131 1mhq_A ADP-ribosylation factor 66.7 17 0.0006 26.9 6.5 80 30-109 17-114 (148)
132 2x6h_A GH13170P, VPS34, phosph 66.4 18 0.0006 34.4 7.8 73 204-277 75-147 (696)
133 3ldz_A STAM-1, signal transduc 65.9 36 0.0012 24.8 9.0 29 270-298 85-113 (140)
134 3ls8_A Phosphatidylinositol 3- 64.6 10 0.00036 35.3 5.8 70 205-275 62-131 (614)
135 1dvp_A HRS, hepatocyte growth 63.4 38 0.0013 26.9 8.4 78 30-108 21-112 (220)
136 1vsy_5 Proteasome activator BL 63.4 14 0.00047 36.9 6.8 128 13-142 794-965 (997)
137 3gyz_A Chaperone protein IPGC; 61.1 46 0.0016 24.3 11.5 93 205-297 53-150 (151)
138 2qzg_A Conserved uncharacteriz 59.2 38 0.0013 22.8 7.5 58 239-296 20-88 (94)
139 1upk_A MO25 protein; transfera 58.8 65 0.0022 27.5 9.2 57 174-232 210-280 (341)
140 3g2s_A C-terminal fragment of 58.7 53 0.0018 24.3 9.1 29 270-298 91-125 (149)
141 2qsb_A UPF0147 protein TA0600; 58.4 38 0.0013 22.5 7.4 59 238-296 15-84 (89)
142 1x5b_A Signal transducing adap 58.4 56 0.0019 24.5 9.6 88 175-263 16-120 (163)
143 1vsy_5 Proteasome activator BL 57.0 14 0.00049 36.7 5.7 116 191-308 817-974 (997)
144 3dad_A FH1/FH2 domain-containi 54.9 1E+02 0.0034 26.4 15.1 26 17-44 119-144 (339)
145 3ut4_A CTHE_2751, putative unc 54.1 60 0.0021 23.6 9.0 100 195-297 17-128 (134)
146 1t06_A Hypothetical protein; s 54.0 83 0.0028 25.1 12.3 116 19-142 51-179 (235)
147 4fke_A Aminopeptidase N; zinc 53.0 1.8E+02 0.006 28.6 16.2 89 192-281 689-786 (909)
148 1mhq_A ADP-ribosylation factor 51.2 71 0.0024 23.5 9.1 26 206-231 38-63 (148)
149 2wxf_A Phosphatidylinositol-4, 49.4 71 0.0024 31.6 9.1 77 48-125 439-518 (940)
150 2i9c_A Hypothetical protein RP 48.2 15 0.00051 26.3 3.1 58 81-141 58-115 (123)
151 3dad_A FH1/FH2 domain-containi 44.9 1.5E+02 0.005 25.3 15.5 89 51-142 120-230 (339)
152 3hhm_A Phosphatidylinositol-4, 44.3 49 0.0017 33.2 7.1 56 192-248 603-664 (1091)
153 1juq_A ADP-ribosylation factor 43.8 1E+02 0.0035 23.3 10.0 93 174-266 13-126 (171)
154 3b34_A Aminopeptidase N; prote 41.3 2.4E+02 0.0083 27.6 11.5 244 13-294 612-890 (891)
155 3rjo_A Endoplasmic reticulum a 41.2 97 0.0033 27.1 8.1 86 191-279 199-293 (419)
156 3rjo_A Endoplasmic reticulum a 40.9 1.8E+02 0.0062 25.3 10.1 40 175-215 254-293 (419)
157 3ls8_A Phosphatidylinositol 3- 40.5 38 0.0013 31.6 5.4 110 16-126 26-142 (614)
158 1ho8_A Vacuolar ATP synthase s 40.1 37 0.0012 30.6 5.0 64 237-300 395-477 (480)
159 1dvp_A HRS, hepatocyte growth 38.9 1.4E+02 0.0048 23.4 9.4 71 192-263 26-110 (220)
160 3hhm_A Phosphatidylinositol-4, 38.5 65 0.0022 32.3 6.9 77 48-125 585-665 (1091)
161 2x6h_A GH13170P, VPS34, phosph 38.2 80 0.0027 30.0 7.3 77 48-125 76-155 (696)
162 1ho8_A Vacuolar ATP synthase s 36.0 16 0.00054 32.9 2.0 11 16-26 395-405 (480)
163 2wxf_A Phosphatidylinositol-4, 36.0 92 0.0032 30.8 7.5 18 219-236 485-502 (940)
164 2y3a_A Phosphatidylinositol-4, 35.6 89 0.003 31.4 7.4 77 48-125 592-671 (1092)
165 1elk_A Target of MYB1; superhe 35.5 1.3E+02 0.0046 22.2 9.1 57 18-74 17-79 (157)
166 4atg_A TAF6; transcription, TF 34.8 40 0.0014 26.3 3.9 61 221-281 105-179 (196)
167 1z5h_A Tricorn protease intera 34.6 3.2E+02 0.011 26.3 17.4 85 191-279 588-675 (780)
168 1e7u_A Phosphatidylinositol 3- 34.3 1.1E+02 0.0038 30.3 7.8 80 47-126 444-530 (961)
169 1vdy_A Hypothetical protein (R 33.1 90 0.0031 22.8 5.4 62 237-300 49-131 (140)
170 3qou_A Protein YBBN; thioredox 31.8 2E+02 0.0069 23.1 10.9 127 174-300 136-271 (287)
171 1e7u_A Phosphatidylinositol 3- 30.8 95 0.0032 30.8 6.7 72 203-274 443-518 (961)
172 2xdt_A Endoplasmic reticulum a 30.6 2.9E+02 0.01 27.0 10.2 85 191-278 682-775 (897)
173 3se6_A Endoplasmic reticulum a 29.1 2E+02 0.0069 28.5 8.8 86 191-279 750-844 (967)
174 2y3a_A Phosphatidylinositol-4, 27.7 1.1E+02 0.0037 30.8 6.5 66 205-271 592-657 (1092)
175 3b34_A Aminopeptidase N; prote 27.2 4.5E+02 0.015 25.7 21.3 222 49-301 615-858 (891)
176 1elk_A Target of MYB1; superhe 27.0 1.9E+02 0.0065 21.3 9.6 15 284-298 115-129 (157)
177 1l5j_A Aconitate hydratase 2; 23.7 5.2E+02 0.018 25.2 11.1 131 11-150 20-161 (865)
178 2xcb_A PCRH, regulatory protei 23.2 1.9E+02 0.0065 20.0 10.1 96 205-300 35-139 (142)
179 2e2e_A Formate-dependent nitri 21.4 2.3E+02 0.0078 20.3 12.4 124 173-296 28-160 (177)
180 1vdy_A Hypothetical protein (R 20.9 2.5E+02 0.0084 20.4 6.7 34 205-238 48-81 (140)
181 1l5j_A Aconitate hydratase 2; 20.7 4.8E+02 0.017 25.4 9.2 108 172-285 24-142 (865)
No 1
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.96 E-value=2e-27 Score=204.88 Aligned_cols=245 Identities=18% Similarity=0.171 Sum_probs=213.8
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCC-CCcHHHHHHh----
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQD-AEAIPALEAV---- 88 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~---- 88 (318)
.+.+++.|.+.|.++++ .+|..|++.|+.++.+.+++.|.+++.|+++.+|..|+++|+.++. ...++.+.++
T Consensus 21 ~~~~i~~L~~~L~~~~~--~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNS--LKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HTSCHHHHHHHTTCSSH--HHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCH--HHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34578999999998876 9999999999999998899999999999999999999999999984 3445544443
Q ss_pred -hhcCCCCHHHHHHHHHHHHhcC------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCc
Q 021051 89 -LNDFSLHPIVRHEAAEALGAIG------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFM 161 (318)
Q Consensus 89 -l~~~~~~~~vR~~a~~~L~~~~------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~ 161 (318)
+. ++++.||..++.+|+.++ .+..++.|.. +.+|+++.||..++.+|+.++
T Consensus 99 ~~~--d~~~~vr~~a~~aL~~l~~~~~~~~~~~~~~L~~-~l~d~~~~vR~~a~~aL~~~~------------------- 156 (280)
T 1oyz_A 99 ALN--DKSACVRATAIESTAQRCKKNPIYSPKIVEQSQI-TAFDKSTNVRRATAFAISVIN------------------- 156 (280)
T ss_dssp HHH--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHTC--------------------
T ss_pred Hhc--CCCHHHHHHHHHHHHHHhccCCcccHHHHHHHHH-HhhCCCHHHHHHHHHHHHhcC-------------------
Confidence 34 899999999999999987 4567788888 668999999999999999887
Q ss_pred ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchH
Q 021051 162 SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAAS 239 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~ 239 (318)
++..++.|...+.++++. +|..|+.+|+.++ .+..++.|.+.++|+++.+|..|+.+|+.++++.++
T Consensus 157 ---------~~~~~~~L~~~l~d~~~~--vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~~~~~ 225 (280)
T 1oyz_A 157 ---------DKATIPLLINLLKDPNGD--VRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVL 225 (280)
T ss_dssp -----------CCHHHHHHHHTCSSHH--HHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCGGGH
T ss_pred ---------CHHHHHHHHHHHcCCCHH--HHHHHHHHHHhhccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCHhhH
Confidence 134799999999888776 5999999999998 788999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcC-CCHHHHHHHHHHHHhc
Q 021051 240 AALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKD-PEPIVSQSCEVALSML 297 (318)
Q Consensus 240 ~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~-~~~~vr~~a~~aL~~l 297 (318)
+.|...+.++ + ||..|+++|+.+|++.+++.|.+++.+ +++.++..++.+|.++
T Consensus 226 ~~L~~~l~d~--~--vr~~a~~aL~~i~~~~~~~~L~~~l~~~~~~~~~~~~~~~l~~~ 280 (280)
T 1oyz_A 226 SVLCDELKKN--T--VYDDIIEAAGELGDKTLLPVLDTMLYKFDDNEIITSAIDKLKRS 280 (280)
T ss_dssp HHHHHHHTSS--S--CCHHHHHHHHHHCCGGGHHHHHHHHTTSSCCHHHHHHHHHHTCC
T ss_pred HHHHHHhcCc--c--HHHHHHHHHHhcCchhhhHHHHHHHhcCCCcHHHHHHHHHhhcC
Confidence 9999999874 3 999999999999999999999998875 6788888888888654
No 2
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.93 E-value=1e-24 Score=180.02 Aligned_cols=126 Identities=23% Similarity=0.305 Sum_probs=84.7
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCH
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHP 253 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~ 253 (318)
.++.|.+.+.++++. +|..|+.+|+++++...++.|.++++|+++.+|..|+.+|+.++++++++.|..++.++ ++
T Consensus 82 ~~~~L~~~l~~~~~~--vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~ 157 (211)
T 3ltm_A 82 AVEPLIKALKDEDGW--VRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DG 157 (211)
T ss_dssp GHHHHHHHTTCSSHH--HHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCS--SH
T ss_pred HHHHHHHHHcCCCHH--HHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCC--CH
Confidence 344444444444333 25555555555555566777777777777778888888888887777788888877765 77
Q ss_pred HHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 254 MVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 254 ~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
.||..|+++|+.++++.+++.|.++++++++.||..|..+|..++.....
T Consensus 158 ~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~~ 207 (211)
T 3ltm_A 158 WVRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHKSFNHH 207 (211)
T ss_dssp HHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCC
Confidence 88888888888888877888888887777788888888888877776553
No 3
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.93 E-value=2.1e-24 Score=185.96 Aligned_cols=226 Identities=20% Similarity=0.150 Sum_probs=193.2
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-CCcHHH----HHhh
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-ESNIPL----LKNS 121 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-~~~~~~----L~~~ 121 (318)
.+..++.|++.|.|+++.+|..|+++|+.++.+..++.|..++. ++++.+|..|+.+|+.++. +...+. |...
T Consensus 21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~--d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~ 98 (280)
T 1oyz_A 21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQDAVRLAIEFCS--DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNM 98 (280)
T ss_dssp HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCHHHHHHHHHHHT--CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCchHHHHHHHHHc--CCCHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 34679999999999999999999999999999889999999999 8999999999999999984 344443 3323
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051 122 LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN 201 (318)
Q Consensus 122 l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~ 201 (318)
+.+|+++.||..++++|+.++. .... ..+..++.|...+.++++. +|..|+.+|++
T Consensus 99 ~~~d~~~~vr~~a~~aL~~l~~-~~~~---------------------~~~~~~~~L~~~l~d~~~~--vR~~a~~aL~~ 154 (280)
T 1oyz_A 99 ALNDKSACVRATAIESTAQRCK-KNPI---------------------YSPKIVEQSQITAFDKSTN--VRRATAFAISV 154 (280)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHH-HCGG---------------------GHHHHHHHHHHHTTCSCHH--HHHHHHHHHHT
T ss_pred HhcCCCHHHHHHHHHHHHHHhc-cCCc---------------------ccHHHHHHHHHHhhCCCHH--HHHHHHHHHHh
Confidence 4589999999999999999871 0000 0123678889999888776 59999999999
Q ss_pred CCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhh
Q 021051 202 HGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFA 279 (318)
Q Consensus 202 ~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l 279 (318)
+++..+++.|.+++.|+++.+|..++.+|+.++ .+.+++.|...+.++ ++.||..|+++|+.++++.+++.|.+.+
T Consensus 155 ~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~~~~~~~L~~~l 232 (280)
T 1oyz_A 155 INDKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRKDKRVLSVLCDEL 232 (280)
T ss_dssp C---CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCHhhHHHHHHHh
Confidence 999999999999999999999999999999997 678999999999987 8999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHhchhhhc
Q 021051 280 KDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 280 ~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
++++ ||..+..+|+.++....
T Consensus 233 ~d~~--vr~~a~~aL~~i~~~~~ 253 (280)
T 1oyz_A 233 KKNT--VYDDIIEAAGELGDKTL 253 (280)
T ss_dssp TSSS--CCHHHHHHHHHHCCGGG
T ss_pred cCcc--HHHHHHHHHHhcCchhh
Confidence 8865 89999999999987644
No 4
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.91 E-value=3.3e-23 Score=169.59 Aligned_cols=184 Identities=27% Similarity=0.377 Sum_probs=111.5
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHH
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQE 129 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~ 129 (318)
..+.+++.|+++++.+|..|+++|+.++....++.|.+++. ++++.+|..|+.+|+.++++..++.|.+ +++|+++.
T Consensus 15 ~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~~L~~~~~~~~~~~L~~-~l~d~~~~ 91 (201)
T 3ltj_A 15 KVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIK-ALKDEDGW 91 (201)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHH
T ss_pred chHHHHHHhcCCCHHHHHHHHHHHHhcCChhHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHH-HHcCCCHH
Confidence 44455555555555555555555555555455555555555 4555555555555555555445555555 33444554
Q ss_pred HHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHH
Q 021051 130 VRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVS 209 (318)
Q Consensus 130 vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~ 209 (318)
|| ..|+.+|+++++..+++
T Consensus 92 vr-------------------------------------------------------------~~a~~aL~~~~~~~~~~ 110 (201)
T 3ltj_A 92 VR-------------------------------------------------------------QSAAVALGQIGDERAVE 110 (201)
T ss_dssp HH-------------------------------------------------------------HHHHHHHHHHCCGGGHH
T ss_pred HH-------------------------------------------------------------HHHHHHHHHhCcHHHHH
Confidence 54 44555555555555666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHH
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQS 289 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~ 289 (318)
.|.++++|+++.+|..|+.+|+.++++.+++.|..++.++ ++.||..|+++|+.++++.+++.|..+++++++.||..
T Consensus 111 ~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~ 188 (201)
T 3ltj_A 111 PLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDE--DGWVRQSAADALGEIGGERVRAAMEKLAETGTGFARKV 188 (201)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHH
Confidence 6666666667777777777777777666777777777665 66777777777777777777777777776667777777
Q ss_pred HHHHHHhchh
Q 021051 290 CEVALSMLEY 299 (318)
Q Consensus 290 a~~aL~~l~~ 299 (318)
|..+|.++..
T Consensus 189 A~~aL~~l~~ 198 (201)
T 3ltj_A 189 AVNYLETHKS 198 (201)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHHHh
Confidence 7777766653
No 5
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.91 E-value=6.3e-23 Score=167.92 Aligned_cols=188 Identities=27% Similarity=0.289 Sum_probs=149.7
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhc
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLND 91 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 91 (318)
.+.+...+.+++.|.++++ .+|..|+..|+.++.+..++.|.+.+.++++.+|..|+++|+.++....++.|..++.
T Consensus 10 ~~~~~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~- 86 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDDSY--YVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALK- 86 (201)
T ss_dssp CCCHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT-
T ss_pred ccCCcchHHHHHHhcCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHc-
Confidence 4678899999999999986 9999999999999998999999999999999999999999999999899999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC
Q 021051 92 FSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS 171 (318)
Q Consensus 92 ~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (318)
++++.+|..|+.+|+.++++..++.|.+ +.+|+++.||..++.+|+.++ .
T Consensus 87 -d~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~----------------------------~ 136 (201)
T 3ltj_A 87 -DEDGWVRQSAAVALGQIGDERAVEPLIK-ALKDEDWFVRIAAAFALGEIG----------------------------D 136 (201)
T ss_dssp -CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTCSSHHHHHHHHHHHHHHT----------------------------C
T ss_pred -CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhC----------------------------C
Confidence 8999999999999999999989999999 668899999999999988776 1
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccC
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ 234 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~ 234 (318)
+..++.|..++.++++. +|..|+.+|+.+++..+++.|.++++++++.+|..|+.+|+++.
T Consensus 137 ~~~~~~L~~~l~d~~~~--vr~~A~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 137 ERAVEPLIKALKDEDGW--VRQSAADALGEIGGERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp GGGHHHHHHHTTCSSHH--HHHHHHHHHHHHCSHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCCHH--HHHHHHHHHHHhCchhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 23455555555444332 35555555555555555555555555555555555555555443
No 6
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.91 E-value=8e-23 Score=168.60 Aligned_cols=194 Identities=27% Similarity=0.338 Sum_probs=164.1
Q ss_pred HHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHh
Q 021051 41 SLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKN 120 (318)
Q Consensus 41 ~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~ 120 (318)
......+++.++.|++.|+++++.+|..|++.|+.++....++.|.+++. ++++.+|..|+.+|+.++++..++.|.+
T Consensus 11 ~~~~~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~--~~~~~vr~~a~~aL~~~~~~~~~~~L~~ 88 (211)
T 3ltm_A 11 AAPLRADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALK--DEDAWVRRAAADALGQIGDERAVEPLIK 88 (211)
T ss_dssp -----CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTT--CSCHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred hhHhhcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHc--CCCHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 33344567889999999999999999999999999988888999999998 7889999999999999998888898888
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH
Q 021051 121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR 200 (318)
Q Consensus 121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~ 200 (318)
+++|+++.||..++.+|+.++ ..+.++.|.+.+.++++. +|..|+.+|+
T Consensus 89 -~l~~~~~~vr~~a~~aL~~~~----------------------------~~~~~~~L~~~l~d~~~~--vr~~a~~aL~ 137 (211)
T 3ltm_A 89 -ALKDEDGWVRQSAAVALGQIG----------------------------DERAVEPLIKALKDEDWF--VRIAAAFALG 137 (211)
T ss_dssp -HTTCSSHHHHHHHHHHHHHHC----------------------------CGGGHHHHHHHTTCSSHH--HHHHHHHHHH
T ss_pred -HHcCCCHHHHHHHHHHHHHhC----------------------------cHHHHHHHHHHHhCCCHH--HHHHHHHHHH
Confidence 568889999999999999887 234688888888777765 4999999999
Q ss_pred hCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051 201 NHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269 (318)
Q Consensus 201 ~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~ 269 (318)
+++..+.++.|.++++|+++.+|..++.+|+.++++.+++.|..++.++ ++.||..|+++|+.++..
T Consensus 138 ~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 138 EIGDERAVEPLIKALKDEDGWVRQSAADALGEIGGERVRAAMEKLAETG--TGFARKVAVNYLETHKSF 204 (211)
T ss_dssp HHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCSHHHHHHHHHHHHHC--CHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCchhHHHHHHHHHhCC--CHHHHHHHHHHHHhcCCC
Confidence 9999889999999999999999999999999999999999999999887 899999999999998754
No 7
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.84 E-value=7.2e-19 Score=160.86 Aligned_cols=259 Identities=16% Similarity=0.188 Sum_probs=211.1
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhcc----CCC---------ChHHHHHHhccCC-CHHHHHHHHHHHhccCC----
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNL----KGP---------GPRDALIRATKDS-SNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~----~~~---------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---- 78 (318)
.++.|++.|.++++ .+|..|+..|+++ ..+ ..++.|++.|.++ ++.+|..|+++|+.+..
T Consensus 21 ~l~~l~~~l~s~~~--~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~ 98 (450)
T 2jdq_A 21 ITSDMIEMIFSKSP--EQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSL 98 (450)
T ss_dssp -CHHHHHHHHSSCH--HHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHH
T ss_pred cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 37889999998876 8999999999875 222 6789999999888 89999999999988754
Q ss_pred -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051 79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
...++.|.+++. ++++.+|..|+.+|+++.. .+.++.|...+..++++.+|..++++|++
T Consensus 99 ~~~~~~~~~~i~~L~~lL~--~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 99 QTRIVIQAGAVPIFIELLS--SEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 468999999999 7899999999999998764 35788999945435899999999999999
Q ss_pred HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHH
Q 021051 141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVS 209 (318)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~ 209 (318)
+.. . ..+... .. . ....++.|..++.+++.. +|..++++|+++... ..++
T Consensus 177 l~~-~-~~~~~~-------~~-------~-~~~~l~~L~~~l~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 237 (450)
T 2jdq_A 177 LCR-G-KSPPPE-------FA-------K-VSPCLNVLSWLLFVSDTD--VLADACWALSYLSDGPNDKIQAVIDAGVCR 237 (450)
T ss_dssp HHC-C-SSSCCC-------GG-------G-TGGGHHHHHHHTTCCCHH--HHHHHHHHHHHHTSSSHHHHHHHHHTTTHH
T ss_pred HhC-C-CCCCCC-------HH-------H-HHHHHHHHHHHHccCCHH--HHHHHHHHHHHHHCCCcHHHHHHHHcCcHH
Confidence 981 1 000000 00 0 135799999999887765 599999999998652 4788
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------- 268 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------- 268 (318)
.|.+++.++++.++..++.+|+.+.. ...++.|+.++.++ ++.+|..|+++|+++..
T Consensus 238 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 238 RLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999998764 25789999999986 89999999999999963
Q ss_pred -hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 269 -DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 269 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.+.++.|.+++.++++.||..|+++|.++...
T Consensus 316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 316 DANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 25678888999999999999999999999765
No 8
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.81 E-value=1e-17 Score=153.27 Aligned_cols=263 Identities=16% Similarity=0.168 Sum_probs=213.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA----- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 79 (318)
..++.|++.|.+++ +..+|..|++.++.+.. ...++.|.++++++++.+|..|+++|+.+...
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 67889999999883 24899999999988754 46899999999999999999999999987642
Q ss_pred ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..++.|..++.+ ++++.+|..++.+|+++.. ...++.|.+ +..++++.++..+.++|+++.
T Consensus 143 ~~~~~~~~i~~L~~~l~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~l~~~~~~v~~~a~~~L~~l~ 220 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSK-QNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSW-LLFVSDTDVLADACWALSYLS 220 (450)
T ss_dssp HHHHHTTCHHHHHHHTTS-CCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHhcC-CCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HHccCCHHHHHHHHHHHHHHH
Confidence 578999999992 4789999999999998752 246888999 667889999999999999887
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVSAI 211 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~~l 211 (318)
. ..... ...+ .....++.|+.++.++++. +|..|+.+|+++... ..++.|
T Consensus 221 ~--~~~~~-~~~~--------------~~~~~i~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 281 (450)
T 2jdq_A 221 D--GPNDK-IQAV--------------IDAGVCRRLVELLMHNDYK--VVSPALRAVGNIVTGDDIQTQVILNCSALQSL 281 (450)
T ss_dssp S--SSHHH-HHHH--------------HHTTTHHHHHHHTTCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHH
T ss_pred C--CCcHH-HHHH--------------HHcCcHHHHHHHHCCCchh--HHHHHHHHHHHHhhCChHHHHHHHHCccHHHH
Confidence 1 00000 0000 0123689999999877765 499999999988542 478889
Q ss_pred HHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch--------
Q 021051 212 IDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD-------- 269 (318)
Q Consensus 212 ~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~-------- 269 (318)
.+++.++++.+|..|+.+|+.+.. ...++.|+.++.+. ++.+|..|+++|+++. ++
T Consensus 282 ~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~l~~ 359 (450)
T 2jdq_A 282 LHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSGGSAEQIKYLVE 359 (450)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999863 35788999999987 8999999999999983 22
Q ss_pred -hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 270 -QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 -~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.++.|.++++++++.++..|.++|..+-....
T Consensus 360 ~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 360 LGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 367888999999999999999999998876543
No 9
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.81 E-value=4e-18 Score=159.61 Aligned_cols=261 Identities=16% Similarity=0.208 Sum_probs=213.6
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCC-CHHHHHHHHHHHhccCC----
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDS-SNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~---- 78 (318)
..++.|++.|.++++ .+|..|+..|+.+.. ...++.|+++|.++ ++.+|..|+++|+.+..
T Consensus 87 ~~i~~lv~~L~s~~~--~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 87 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence 468889999998875 899999999987632 25789999999887 89999999999998875
Q ss_pred -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051 79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
..+++.|+.++. ++++.+|..|+.+|+++.. ...++.|.. +..++++.++..++++|..
T Consensus 165 ~~~~~~~~g~i~~Lv~lL~--~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 165 QTKVVVDADAVPLFIQLLY--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILG-LFNSNKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHH--HCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-GGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHH-HhccCCHHHHHHHHHHHHH
Confidence 367999999999 7899999999999998853 257889999 5577999999999999999
Q ss_pred HHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHH
Q 021051 141 IEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVS 209 (318)
Q Consensus 141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~ 209 (318)
+.. +..+... . ......++.|+.++.++++. +|..++.+|+++... ..++
T Consensus 242 L~~--~~~~~~~-------~--------~~~~~~l~~L~~lL~~~d~~--v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~ 302 (530)
T 1wa5_B 242 LCR--GKKPQPD-------W--------SVVSQALPTLAKLIYSMDTE--TLVDACWAISYLSDGPQEAIQAVIDVRIPK 302 (530)
T ss_dssp HHC--CSSSCCC-------H--------HHHGGGHHHHHHHTTCCCHH--HHHHHHHHHHHHHSSCHHHHHHHHHTTCHH
T ss_pred HhC--CCCCCCc-------H--------HHHHhHHHHHHHHHcCCCHH--HHHHHHHHHHHHhCCCHHHHHHHHhcCcHH
Confidence 871 1000000 0 00134789999999887765 599999999988531 5678
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------- 268 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------- 268 (318)
.|..++.++++.++..|+.+|+.+.. ...++.|+.++.+. ++.+|..|+++|+.+..
T Consensus 303 ~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~ 380 (530)
T 1wa5_B 303 RLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVI 380 (530)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 89999999999999999999999863 35788999999987 89999999999999963
Q ss_pred -hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 269 -DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 269 -~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+.++.|..++.++++.+|..|+++|.++.....
T Consensus 381 ~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~ 415 (530)
T 1wa5_B 381 DANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL 415 (530)
T ss_dssp HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC
Confidence 2467888999988999999999999999976543
No 10
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.79 E-value=2.8e-17 Score=153.82 Aligned_cols=262 Identities=16% Similarity=0.143 Sum_probs=213.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA----- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~----- 79 (318)
..++.|+++|.+++ ++.+|..|+++|+.+.. ..+++.|+++|.++++.+|..|+++|+.+...
T Consensus 130 g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~ 208 (530)
T 1wa5_B 130 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYR 208 (530)
T ss_dssp TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccch
Confidence 47889999999873 24899999999998865 46789999999999999999999999987642
Q ss_pred ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..++.|..++. +.++.+|..|+.+|+++... ..++.|.. +..++++.++..++++|+.+.
T Consensus 209 ~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~-lL~~~d~~v~~~a~~~L~~L~ 285 (530)
T 1wa5_B 209 DYVLQCNAMEPILGLFN--SNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAK-LIYSMDTETLVDACWAISYLS 285 (530)
T ss_dssp HHHHHTTCHHHHHHGGG--SCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHH-HTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHhc--cCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHH-HHcCCCHHHHHHHHHHHHHHh
Confidence 57999999999 78999999999999987532 46888999 668889999999999999987
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAI 211 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l 211 (318)
. ........+ .....++.|+.++.++++. +|..|+.+|+++.. ...++.|
T Consensus 286 ~---~~~~~~~~~--------------~~~~~v~~Lv~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 346 (530)
T 1wa5_B 286 D---GPQEAIQAV--------------IDVRIPKRLVELLSHESTL--VQTPALRAVGNIVTGNDLQTQVVINAGVLPAL 346 (530)
T ss_dssp S---SCHHHHHHH--------------HHTTCHHHHHHGGGCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHH
T ss_pred C---CCHHHHHHH--------------HhcCcHHHHHHHHCCCChh--hHHHHHHHHHHHHcCCHHHHHHHHHcchHHHH
Confidence 1 000000000 0124689999999887765 49999999999863 2577888
Q ss_pred HHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch--------
Q 021051 212 IDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD-------- 269 (318)
Q Consensus 212 ~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~-------- 269 (318)
..++.++++.+|..|+.+|+.+.. ...++.|+.++.+. ++.+|..|+++|+.+. .+
T Consensus 347 ~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~l 424 (530)
T 1wa5_B 347 RLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA--EYKTKKEACWAISNASSGGLQRPDIIRYL 424 (530)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTTTCTHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999999999999863 35688999999876 8999999999999983 22
Q ss_pred ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
++++.|..++.++++.++..+.++|..+-....
T Consensus 425 ~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 425 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 368889999999999999999999998876543
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.78 E-value=1.9e-17 Score=154.93 Aligned_cols=270 Identities=17% Similarity=0.193 Sum_probs=214.8
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccCCC-HHHHHHHHHHHhccCCC--
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKDSS-NLLAHEAAFALGQMQDA-- 79 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~~~~-- 79 (318)
...++.|++.|.++++ .+|..|++.|+.+.. ...++.|+++|.+++ +.+|..|+++|+.+...
T Consensus 73 ~~~l~~lv~~L~s~~~--~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~ 150 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDN--NLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS 150 (528)
T ss_dssp --CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH
Confidence 3468899999998875 899999999977621 257999999998876 99999999999987753
Q ss_pred ---------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 80 ---------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 80 ---------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
.+++.|+.++. ++++.+|..|+.+|+++.. ...++.|...+..++++.++..++++|.
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~ 228 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLG--SSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLS 228 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 47999999999 7899999999999998852 2468888885547889999999999999
Q ss_pred HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHH
Q 021051 140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAV 208 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~ 208 (318)
++.. . .... . .. .....++.|..++.++++.+ +..++.+|+++... ..+
T Consensus 229 ~L~~-~-~~~~-~-------~~--------~~~~~l~~L~~lL~~~~~~v--~~~a~~aL~~l~~~~~~~~~~~~~~g~v 288 (528)
T 4b8j_A 229 NFCR-G-KPQP-S-------FE--------QTRPALPALARLIHSNDEEV--LTDACWALSYLSDGTNDKIQAVIEAGVC 288 (528)
T ss_dssp HHHC-S-SSCC-C-------HH--------HHTTHHHHHHHHTTCCCHHH--HHHHHHHHHHHTSSCHHHHHHHHHTTCH
T ss_pred HHHc-C-CCCC-c-------HH--------HHHHHHHHHHHHHCCCCHHH--HHHHHHHHHHHHcCCHHHHHHHHHcCHH
Confidence 9981 0 0000 0 00 01347899999998877664 99999999988642 467
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch------
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD------ 269 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~------ 269 (318)
+.|.+++.++++.++..|+.+|+.+.. ..+++.|+.++.+.. ++.+|..|+++|+++. .+
T Consensus 289 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~ 367 (528)
T 4b8j_A 289 PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAV 367 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 889999999999999999999998864 356899999998642 7899999999999985 22
Q ss_pred ---hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051 270 ---QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL 309 (318)
Q Consensus 270 ---~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~ 309 (318)
+.++.|..++.+.++.++..|+++|.++....+.+...|.
T Consensus 368 ~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l 410 (528)
T 4b8j_A 368 INAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYL 410 (528)
T ss_dssp HHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4578899999888999999999999999887433324443
No 12
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.78 E-value=2.2e-18 Score=161.31 Aligned_cols=262 Identities=19% Similarity=0.209 Sum_probs=212.8
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
..++.|+++|.+++ ++.+|..|+++|+.+... .+++.|+++|.++++.+|..|+++|+.+..
T Consensus 117 g~v~~Lv~lL~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~ 195 (528)
T 4b8j_A 117 GVVPRFVQFLTRED-FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 195 (528)
T ss_dssp TCHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhH
Confidence 47889999999886 248999999999988662 589999999999999999999999998752
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEK 143 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~ 143 (318)
...++.|+.++.. +.++.++..++.+|+++... ..++.|.. ++.++++.++..++++|+++..
T Consensus 196 ~~i~~~g~l~~Ll~lL~~-~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~-lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 196 DLVLANGALLPLLAQLNE-HTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALAR-LIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HHHHHTTCHHHHHHTCCT-TCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHH-HTTCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHCCcHHHHHHHHhc-CCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHc
Confidence 2468899999942 78999999999999987532 47889999 6688999999999999998871
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhHHHHHH
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEAVSAII 212 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~~~~l~ 212 (318)
........+ .....++.|+.++.++++. ++..|+.+|+++.. ...++.|.
T Consensus 274 ---~~~~~~~~~--------------~~~g~v~~Lv~lL~~~~~~--v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~ 334 (528)
T 4b8j_A 274 ---GTNDKIQAV--------------IEAGVCPRLVELLLHPSPS--VLIPALRTVGNIVTGDDAQTQCIIDHQALPCLL 334 (528)
T ss_dssp ---SCHHHHHHH--------------HHTTCHHHHHHHTTCSCHH--HHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHH
T ss_pred ---CCHHHHHHH--------------HHcCHHHHHHHHHcCCChh--HHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHH
Confidence 000000000 0124689999999988765 59999999999864 24678899
Q ss_pred HHhCCC-CHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-----------
Q 021051 213 DSLGAT-SALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD----------- 269 (318)
Q Consensus 213 ~~l~d~-~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~----------- 269 (318)
.++.++ ++.++..|+.+|+.+.. ...++.|+.++.+. ++.+|..|+++|+++...
T Consensus 335 ~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~~l~~ 412 (528)
T 4b8j_A 335 SLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSGGSHDQIKYLVS 412 (528)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999888 99999999999998752 25678999999887 899999999999998532
Q ss_pred -hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 270 -QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 270 -~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
++++.|..++.++++.++..+..+|.++-...
T Consensus 413 ~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 413 EGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp TTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999986544
No 13
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.76 E-value=3.9e-17 Score=157.42 Aligned_cols=264 Identities=19% Similarity=0.254 Sum_probs=167.5
Q ss_pred HHHHHHHHHHhccCC---CChHHHHHHhcc---CCCHHHHHHHHHHHhccCCCC---cHHHHHHhhhcCCCC--------
Q 021051 33 SERFRALFSLRNLKG---PGPRDALIRATK---DSSNLLAHEAAFALGQMQDAE---AIPALEAVLNDFSLH-------- 95 (318)
Q Consensus 33 ~~r~~A~~~l~~~~~---~~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~---~~~~L~~~l~~~~~~-------- 95 (318)
|.+..|+..||-+.. .+....|.++|. +.++.+|..|+.+||-++... +...|.+.+. +++
T Consensus 373 ~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~--~~~~~~~~~~~ 450 (963)
T 4ady_A 373 WAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIV--ENSGTSGDEDV 450 (963)
T ss_dssp HHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHH--HHSSCCSCHHH
T ss_pred HHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHc--Ccccccccccc
Confidence 556666666655432 345555555554 445666666666666554322 3444555554 222
Q ss_pred HHHHHHHHHHHHhc----CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC-cc-cccccc---CC--CCcccC
Q 021051 96 PIVRHEAAEALGAI----GLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG-SD-GSSMTE---RS--PFMSVD 164 (318)
Q Consensus 96 ~~vR~~a~~~L~~~----~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~-~~-~~~~l~---~~--~~~~~~ 164 (318)
+.+|.+|+.+||-+ +++++++.|.. ...++++.+|..++.+||.+. ..+. .. +..++. .. ......
T Consensus 451 ~~ir~gAaLGLGla~~GS~~eev~e~L~~-~L~dd~~~~~~~AalALGli~--vGTgn~~ai~~LL~~~~e~~~e~vrR~ 527 (963)
T 4ady_A 451 DVLLHGASLGIGLAAMGSANIEVYEALKE-VLYNDSATSGEAAALGMGLCM--LGTGKPEAIHDMFTYSQETQHGNITRG 527 (963)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHH-HHHTCCHHHHHHHHHHHHHHH--TTCCCHHHHHHHHHHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHH-HHhcCCHHHHHHHHHHHhhhh--cccCCHHHHHHHHHHHhccCcHHHHHH
Confidence 45566666666553 23344555555 333444555555555555542 0000 00 000000 00 000000
Q ss_pred CC-----CCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH----hCCChhHHHHHHH-HhCCCCHHHHHHHHHHHhc--
Q 021051 165 PA-----APASSCSSVDMLREVLLGEEKGMYERYAALFALR----NHGGDEAVSAIID-SLGATSALLKHEVAYVLGQ-- 232 (318)
Q Consensus 165 ~~-----~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~----~~~~~~~~~~l~~-~l~d~~~~vr~~a~~~L~~-- 232 (318)
.+ ..++.++.++.+++.|...+.+. +|+.++.+++ ..|+..+++.|++ +.+|.+..+|..|+.+||.
T Consensus 528 aalgLGll~~g~~e~~~~li~~L~~~~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~ 606 (963)
T 4ady_A 528 LAVGLALINYGRQELADDLITKMLASDESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVL 606 (963)
T ss_dssp HHHHHHHHTTTCGGGGHHHHHHHHHCSCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhCCChHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhc
Confidence 00 01234678888988887655553 7999998887 5678888887766 4578889999999999997
Q ss_pred cCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC----ChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 233 LQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA----DDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 233 ~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
+++++..+.++..+.+. .++.||+.++.|||.++ .+++++.|..+..|.+.+||..|+.||+.++.++..
T Consensus 607 ~g~~e~v~rlv~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 607 LRDYTTVPRIVQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp SSSCSSHHHHTTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred cCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCcc
Confidence 57778889998877653 38999999999999993 567999999999999999999999999999987653
No 14
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.74 E-value=4.5e-17 Score=151.73 Aligned_cols=279 Identities=18% Similarity=0.135 Sum_probs=209.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
..++.|+++|.+.+. ..++..|+++|+++.. ..+++.|+++|.++++.+|..|+++|+.+..
T Consensus 100 G~ip~LV~lL~~~~~-~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r 178 (510)
T 3ul1_B 100 GLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 178 (510)
T ss_dssp THHHHHHHHTTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 368899999986652 4899999999998743 3579999999999999999999999998753
Q ss_pred -----CCcHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 79 -----AEAIPALEAVLNDFS---LHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~---~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
...++.|+.++...+ ....+.+.+..+|+++.. ...++.|.+ +..++++.++..++++|.
T Consensus 179 ~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~A~~aL~ 257 (510)
T 3ul1_B 179 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAIS 257 (510)
T ss_dssp HHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHH-HHhcCCHHHHHHHHHHHH
Confidence 256889999998321 123456677777776531 125678888 668999999999999999
Q ss_pred HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--h---------hHH
Q 021051 140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--D---------EAV 208 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~---------~~~ 208 (318)
.+.. ......... .....++.|+.++.+++..+ +..++.+++++.. + .++
T Consensus 258 ~L~~---~~~~~~~~i--------------~~~g~i~~Lv~lL~~~~~~v--~~~al~aL~nl~~~~~~~~~~i~~~g~l 318 (510)
T 3ul1_B 258 YLTD---GPNERIEMV--------------VKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDAGAL 318 (510)
T ss_dssp HHTS---SCHHHHHHH--------------HTTTCHHHHHHHHTCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTGG
T ss_pred HHhh---chhhhHHHH--------------HhcccchhhhhhhcCCChhh--hhHHHHHHHHhhcCCHHHHHHHhhccch
Confidence 8871 000000000 01346899999999887765 9999999998743 2 344
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---C------
Q 021051 209 SAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---D------ 268 (318)
Q Consensus 209 ~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~------ 268 (318)
+.|..++.++++.++..|+.+|+.+.. ...++.|+.++.+. ++.+|.+|+++|+++. +
T Consensus 319 ~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~ 396 (510)
T 3ul1_B 319 AVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVY 396 (510)
T ss_dssp GGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHH
Confidence 556677889999999999999998753 35789999999987 8999999999999873 2
Q ss_pred ---hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc--chhhhcccccCCCCC
Q 021051 269 ---DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL--EKSFEYLFMQAPLMQ 317 (318)
Q Consensus 269 ---~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~~~~~~~ 317 (318)
.++++.|.+++.++++.++..+..+|.+|-.... ++.-.|-.++++|||
T Consensus 397 L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~gg 450 (510)
T 3ul1_B 397 LVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGG 450 (510)
T ss_dssp HHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTH
T ss_pred HHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCc
Confidence 2468889999999999999999999998754211 111345556677765
No 15
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.73 E-value=1.2e-16 Score=149.54 Aligned_cols=281 Identities=17% Similarity=0.126 Sum_probs=212.3
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD----- 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----- 78 (318)
...++.|+++|...+ +..++..|+++|..+.. ..+++.|++++.++++.+|..|+++|+.+..
T Consensus 118 ~G~ip~Lv~lL~~~~-~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~ 196 (529)
T 3tpo_A 118 AGLIPKFVSFLGKTD-CSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAF 196 (529)
T ss_dssp TTHHHHHHHHHTCTT-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHH
Confidence 346888999997655 24899999999998754 3578999999999999999999999998753
Q ss_pred ------CCcHHHHHHhhhcCC---CCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHH
Q 021051 79 ------AEAIPALEAVLNDFS---LHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELAL 138 (318)
Q Consensus 79 ------~~~~~~L~~~l~~~~---~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL 138 (318)
..+++.|+.++...+ ....+.+.+..+|+.+.. ...+|.|.. +..++++.++..++++|
T Consensus 197 r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~-LL~~~~~~v~~~a~~aL 275 (529)
T 3tpo_A 197 RDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR-LLHHNDPEVLADSCWAI 275 (529)
T ss_dssp HHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHH-HTTSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHH-HhcCCcHHHHHHHHHHH
Confidence 246889999998321 123456677777776531 125678888 66899999999999999
Q ss_pred HHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------hhH
Q 021051 139 ERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----------DEA 207 (318)
Q Consensus 139 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----------~~~ 207 (318)
..+.. ........ ......++.|+.++.+++..+ +..++.+|+++.. ..+
T Consensus 276 ~~l~~---~~~~~~~~--------------v~~~g~i~~Lv~lL~~~~~~v--~~~a~~aL~nl~~~~~~~~~~i~~~g~ 336 (529)
T 3tpo_A 276 SYLTD---GPNERIEM--------------VVKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDAGA 336 (529)
T ss_dssp HHHHS---SCHHHHHH--------------HHTTTCHHHHHHHHTCSCHHH--HHHHHHHHHHHTTSCHHHHHHHHHTTG
T ss_pred HHhhh---hhhhhHHH--------------HHhccchHHHHHHhcCCChhH--HHHHHHHHHHHHccchHHHHHHhhccc
Confidence 98871 00000000 001347899999999887764 9999999998843 245
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC---Ch----
Q 021051 208 VSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA---DD---- 269 (318)
Q Consensus 208 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~---~~---- 269 (318)
++.|..++.++++.++..|+.+|+.+.. ...+|.|+.++.+. ++.+|..|+++|+++. ++
T Consensus 337 l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 337 LAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp GGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 6778889999999999999999998742 35789999999987 8999999999999873 22
Q ss_pred -----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc--chhhhcccccCCCCCC
Q 021051 270 -----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL--EKSFEYLFMQAPLMQV 318 (318)
Q Consensus 270 -----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~~~~~~~~ 318 (318)
++++.|.+++..+++.++..+..+|.+|-.-.. ++.-.|..++++|||+
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl 470 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL 470 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcH
Confidence 468889999999999999999999998753211 1113455677777763
No 16
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=1.3e-17 Score=157.58 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=87.8
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--------c
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN--------K 236 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--------~ 236 (318)
...+.+...+.+++.. +|..|+.+++.+.. +..++.+.+++.++++.+|..++.+++.+.. +
T Consensus 441 ~l~~~l~~~l~d~~~~--Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~ 518 (588)
T 1b3u_A 441 KLNSLCMAWLVDHVYA--IREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTK 518 (588)
T ss_dssp HHHHHHHHGGGCSSHH--HHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcHH--HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3567777777776654 48888888776532 2455666666677888888888888877653 3
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
..+|.|...+.|+ ++.||..++++|+.+.. +..++.|.+++.|+++.||..|..|++.+.
T Consensus 519 ~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 519 HMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 4667777777776 78888888888888753 245667777777888888888888887764
No 17
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.73 E-value=8.3e-17 Score=149.92 Aligned_cols=267 Identities=18% Similarity=0.212 Sum_probs=206.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC----
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~---- 78 (318)
.+++.+++.+.++++ ..+..|+..++++-+ ...++.|+++|+ ++++.++..|+|+|+.+..
T Consensus 57 ~~i~~~v~~l~s~d~--~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e 134 (510)
T 3ul1_B 57 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 134 (510)
T ss_dssp CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred hhHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH
Confidence 368999999999987 899999998877522 146899999996 5568999999999998742
Q ss_pred -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-----HHHHHHHH
Q 021051 79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-----QEVRETCE 135 (318)
Q Consensus 79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-----~~vr~~a~ 135 (318)
..++|.|+.+|. ++++.+|..|+.+|+++.. ...++.|.. +...++ ..+.+.+.
T Consensus 135 ~~~~vv~~GaIp~Lv~lL~--s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~-lL~~~~~~~~~~~~~~~a~ 211 (510)
T 3ul1_B 135 QTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLT 211 (510)
T ss_dssp HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-HTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHH-HHHhccchhhhHHHHHHHH
Confidence 257999999999 8999999999999998852 346778888 444433 45677888
Q ss_pred HHHHHHHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------
Q 021051 136 LALERIEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------- 204 (318)
Q Consensus 136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------- 204 (318)
+++..+.. ... +.... .....++.|.+++.+++..+ +..++++|.++..
T Consensus 212 ~~L~nl~~---~~~---------------~~~~~~~~~~~lp~L~~LL~~~~~~v--~~~A~~aL~~L~~~~~~~~~~i~ 271 (510)
T 3ul1_B 212 WTLSNLCR---NKN---------------PAPPLDAVEQILPTLVRLLHHNDPEV--LADSCWAISYLTDGPNERIEMVV 271 (510)
T ss_dssp HHHHHHHC---CCS---------------SCCCHHHHHHHHHHHHHHTTCSCHHH--HHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHHHhh---ccc---------------chhHHHHHHhHHHHHHHHHhcCCHHH--HHHHHHHHHHHhhchhhhHHHHH
Confidence 88888761 000 00000 01246788999998887764 9999999998753
Q ss_pred -hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051 205 -DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---- 268 (318)
Q Consensus 205 -~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---- 268 (318)
...++.|.+++.++++.++..++.+|+.+.. ..+++.|..++.+. ++.+|..|+++|+++..
T Consensus 272 ~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl~a~~~~ 349 (510)
T 3ul1_B 272 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQD 349 (510)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS--SHHHHHHHHHHHHHHTTSCHH
T ss_pred hcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC--CHHHHHHHHHHHHHHHcCcHH
Confidence 2467889999999999999999999998743 34566777788876 89999999999999862
Q ss_pred -------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051 269 -------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL 309 (318)
Q Consensus 269 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~ 309 (318)
.+.++.|..++.+.+..+|.+|+++|.++....+.++..|+
T Consensus 350 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L 397 (510)
T 3ul1_B 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYL 397 (510)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHH
Confidence 24688899999999999999999999999877665534443
No 18
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.73 E-value=2.4e-17 Score=155.66 Aligned_cols=260 Identities=14% Similarity=0.133 Sum_probs=176.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--------CChHHHHHHhccCCCHHHHHHHHHHHhccCC--------C
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG--------PGPRDALIRATKDSSNLLAHEAAFALGQMQD--------A 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~ 79 (318)
..++.+..++.|+++ .+|..|+..++.+.. +..++.+..+++|+++.+|..|+.+|+.+.. .
T Consensus 164 ~l~~~l~~l~~d~~~--~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~ 241 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTP--MVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEA 241 (588)
T ss_dssp HHHHHHHHHHTCSCH--HHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 455666777788875 999999999988742 3567888888899999999999999987652 1
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG 151 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 151 (318)
..++.+..++. ++++.+|..++.+|+.+.. +..++.+.+ +.+|+++.||..++.+++.+..........
T Consensus 242 ~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~ 318 (588)
T 1b3u_A 242 LVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQN-LMKDCEAEVRAAASHKVKEFCENLSADCRE 318 (588)
T ss_dssp HTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHH-HHTCSSHHHHHHHHHHHHHHHHTSCTTTHH
T ss_pred HHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHH-HhCCCcHHHHHHHHHHHHHHHHHhChhhhh
Confidence 35677777777 8999999999999988753 356788888 668999999999999999987211000000
Q ss_pred cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHHhCCCCHHHH
Q 021051 152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDSLGATSALLK 223 (318)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr 223 (318)
.. + .+..++.+...+.++++. +|..++.+++.+.. +..++.+...++|.++.+|
T Consensus 319 ~~------~----------~~~l~p~l~~~l~d~~~~--vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr 380 (588)
T 1b3u_A 319 NV------I----------MSQILPCIKELVSDANQH--VKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVR 380 (588)
T ss_dssp HH------H----------HHTHHHHHHHHHTCSCHH--HHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHH
T ss_pred hH------H----------HHHHHHHHHHHhcCCCHH--HHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHH
Confidence 00 0 012456666666666554 47777777666531 2344556666677777777
Q ss_pred HHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--------ChhhHHHHHHhhcCCCHHHH
Q 021051 224 HEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--------DDQSIGLLKEFAKDPEPIVS 287 (318)
Q Consensus 224 ~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~~~~~~vr 287 (318)
..++.+++.+.. +..+|.|...+.+. +|.+|..++.+++.+. .+..++.+...+.|++..||
T Consensus 381 ~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 381 LNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp HHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 777666665432 23556666666654 6777777777766653 13456666666677777777
Q ss_pred HHHHHHHHhchhh
Q 021051 288 QSCEVALSMLEYE 300 (318)
Q Consensus 288 ~~a~~aL~~l~~~ 300 (318)
..|..+++.+...
T Consensus 459 ~~a~~~l~~l~~~ 471 (588)
T 1b3u_A 459 EAATSNLKKLVEK 471 (588)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666443
No 19
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.70 E-value=5.2e-16 Score=145.20 Aligned_cols=267 Identities=18% Similarity=0.212 Sum_probs=207.0
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhcc-CCCHHHHHHHHHHHhccCC----
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATK-DSSNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~---- 78 (318)
..++.+++.+.++++ ..+..|+..+.++-+ ...++.|+++|. +.++.++..|+|+|+.+..
T Consensus 76 ~~l~~lv~~l~s~d~--~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~ 153 (529)
T 3tpo_A 76 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 153 (529)
T ss_dssp CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 367889999999987 899999988876421 257888999995 5679999999999998753
Q ss_pred -------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-----HHHHHHHH
Q 021051 79 -------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-----QEVRETCE 135 (318)
Q Consensus 79 -------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-----~~vr~~a~ 135 (318)
..++|.|+.++. ++++.+|..|+.+|+++.. ...++.|.. ++..++ ..+.+.+.
T Consensus 154 ~~~~vv~~Gaip~Lv~LL~--s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~-lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 154 QTKAVVDGGAIPAFISLLA--SPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLA-LLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHH-TTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHH-HHhccchhHhHHHHHHHHH
Confidence 257899999999 8999999999999998852 346788888 444433 45677888
Q ss_pred HHHHHHHhhhccCccccccccCCCCcccCCCCCC-CCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------
Q 021051 136 LALERIEKLKASGSDGSSMTERSPFMSVDPAAPA-SSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG---------- 204 (318)
Q Consensus 136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------- 204 (318)
+++..+.. +.. +.... .....++.|..++.++++.+ +..++++|.++..
T Consensus 231 ~~L~nl~~--~~~----------------~~~~~~~~~~~lp~L~~LL~~~~~~v--~~~a~~aL~~l~~~~~~~~~~v~ 290 (529)
T 3tpo_A 231 WTLSNLCR--NKN----------------PAPPLDAVEQILPTLVRLLHHNDPEV--LADSCWAISYLTDGPNERIEMVV 290 (529)
T ss_dssp HHHHHHHC--CCT----------------TCCCHHHHHHHHHHHHHHTTSSCHHH--HHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHh--ccc----------------chhhHHHHhhHHHHHHHHhcCCcHHH--HHHHHHHHHHhhhhhhhhHHHHH
Confidence 88888761 000 00000 01236788999998887765 9999999987642
Q ss_pred -hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----
Q 021051 205 -DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---- 268 (318)
Q Consensus 205 -~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---- 268 (318)
...++.|.+++.++++.++..++.+|+.+.. ..+++.|..++.++ ++.+|..|+++|+++..
T Consensus 291 ~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~ 368 (529)
T 3tpo_A 291 KKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQD 368 (529)
T ss_dssp TTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHH
T ss_pred hccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHH
Confidence 3567889999999999999999999998742 34678899999887 89999999999999842
Q ss_pred -------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051 269 -------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL 309 (318)
Q Consensus 269 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~ 309 (318)
.+.++.|..++.+.+..++..|+++|.++..+.+.++..|+
T Consensus 369 ~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l 416 (529)
T 3tpo_A 369 QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYL 416 (529)
T ss_dssp HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 24688999999999999999999999999876655534443
No 20
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.68 E-value=8.7e-16 Score=147.74 Aligned_cols=264 Identities=18% Similarity=0.142 Sum_probs=209.0
Q ss_pred hhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 16 EMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
..++.++++|.++ +. .+|..|++.|..+.. ..+++.|++++++.++.++..++++|+.+...
T Consensus 377 ~Lv~~l~~lL~~~~~d~--~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~ 454 (810)
T 3now_A 377 KLAEACRRFLIKPGKDK--DIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK 454 (810)
T ss_dssp HHHHHHHHHHHCSSCCS--SHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHhcCCCCCH--HHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence 3466788889988 65 899999999988865 35789999999999999999999999987642
Q ss_pred ----------------------------------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------
Q 021051 80 ----------------------------------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-------- 111 (318)
Q Consensus 80 ----------------------------------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------- 111 (318)
.++|.|+.++. ++++.+|..|+++|+++..
T Consensus 455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~--s~s~~vqe~Aa~aL~NLA~d~~~r~~V 532 (810)
T 3now_A 455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAK--TESHNSQELIARVLNAVCGLKELRGKV 532 (810)
T ss_dssp CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHT--CCCHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 35899999999 8999999999999998852
Q ss_pred --CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcCh
Q 021051 112 --ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGM 189 (318)
Q Consensus 112 --~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~ 189 (318)
...++.|.. ++.+.++.++..|+++|.++... ..+.. . + .... ..++++.|+.+|.++. ..
T Consensus 533 v~~Gaip~Lv~-LL~s~~~~~k~~Aa~AL~nL~~~--~~p~~--~-----~----~~~~--~~~aIppLv~LL~~~~-~~ 595 (810)
T 3now_A 533 VQEGGVKALLR-MALEGTEKGKRHATQALARIGIT--INPEV--S-----F----SGQR--SLDVIRPLLNLLQQDC-TA 595 (810)
T ss_dssp HHTTHHHHHHH-HHHSSCHHHHHHHHHHHHHHHHH--SCHHH--H-----T----TTHH--HHHTHHHHHHTTSTTS-CH
T ss_pred HHCCCHHHHHH-HHccCCHHHHHHHHHHHHHHhcC--CChhh--h-----h----cchh--hhcHHHHHHHHhCCCC-cH
Confidence 457899999 55788899999999999998611 11000 0 0 0000 0136899999997543 33
Q ss_pred HHHHHHHHHHHhCCCh-----------hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHh
Q 021051 190 YERYAALFALRNHGGD-----------EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLR 247 (318)
Q Consensus 190 ~~r~~a~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~ 247 (318)
..+..|+.+|.++... .+++.|.+++.+.++.++..|+.+++.+.. ...++.|+.++.
T Consensus 596 l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~ 675 (810)
T 3now_A 596 LENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE 675 (810)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc
Confidence 3466899999988542 467889999989999999999999998652 467889999998
Q ss_pred ccCCCHHHHHHHHHHHhccCC------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 248 NVNEHPMVRHEAAEALGSIAD------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 248 ~~~~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.. +..+|.+|+++|+.+.. .+.++.|.+++.+++..++..|.++|.++...+.
T Consensus 676 s~--d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~ 740 (810)
T 3now_A 676 DE--DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGE 740 (810)
T ss_dssp CS--SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCH
T ss_pred CC--CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCH
Confidence 76 89999999999999852 3578899999999999999999999999987543
No 21
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.66 E-value=2.2e-14 Score=120.60 Aligned_cols=199 Identities=22% Similarity=0.293 Sum_probs=128.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-------
Q 021051 51 RDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE------- 112 (318)
Q Consensus 51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~------- 112 (318)
++.|++.|.++++.+|..|+++|+.+.. ...++.|.+++. ++++.+|..++.+|+++...
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 4445555554455555555555544422 135666667776 56677777777777666543
Q ss_pred ----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC
Q 021051 113 ----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG 188 (318)
Q Consensus 113 ----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~ 188 (318)
+.++.|.. +.+++++.+|..++++|+++.. .++.
T Consensus 82 ~~~~~~i~~l~~-ll~~~~~~v~~~a~~~L~~l~~-----------------------------------------~~~~ 119 (252)
T 4hxt_A 82 IVDAGGVEVLVK-LLTSTDSEVQKEAARALANIAS-----------------------------------------GPDE 119 (252)
T ss_dssp HHHTTHHHHHHH-HTTCSSHHHHHHHHHHHHHHTT-----------------------------------------SCHH
T ss_pred HHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHc-----------------------------------------CCHH
Confidence 45667777 5566777777777777776650 0000
Q ss_pred hHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHH
Q 021051 189 MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRH 257 (318)
Q Consensus 189 ~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~ 257 (318)
. +...+ ....++.|.+++.++++.++..++.+|+.+.. ...++.|+.++.+. ++.+|.
T Consensus 120 ~--~~~~~-------~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~ 188 (252)
T 4hxt_A 120 A--IKAIV-------DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQK 188 (252)
T ss_dssp H--HHHHH-------HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHH
T ss_pred H--HHHHH-------HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHH
Confidence 0 00000 01345666666666666666666666666542 23678888888765 788888
Q ss_pred HHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 258 EAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 258 ~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
.|+.+|+.+.. .+.++.|.++++++++.+|..|.++|.++......+
T Consensus 189 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 189 EAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp HHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 88888888753 246889999999999999999999999999887655
No 22
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.62 E-value=3.5e-16 Score=118.72 Aligned_cols=120 Identities=19% Similarity=0.255 Sum_probs=104.9
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCC
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEH 252 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~ 252 (318)
...+.+...|.++++.+ |..|+.+|+++++.. ++.|.+.++|+++.+|..|+.+||.++++.+++.|...+.|+ +
T Consensus 12 ~~~~~l~~~L~~~~~~v--R~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~--~ 86 (131)
T 1te4_A 12 SGLVPRGSHMADENKWV--RRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLEDD--S 86 (131)
T ss_dssp ---------CCSSCCCS--SSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHHHC--C
T ss_pred ccHHHHHHHhcCCCHHH--HHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC--C
Confidence 46788999999988886 999999999998875 699999999999999999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 253 PMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 253 ~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
+.||..|+++|+.++++.+++.|.++++++++.||..|..+|++|
T Consensus 87 ~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i 131 (131)
T 1te4_A 87 GFVRSGAARSLEQIGGERVRAAMEKLAETGTGFARKVAVNYLETH 131 (131)
T ss_dssp THHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999875
No 23
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.61 E-value=3e-14 Score=140.62 Aligned_cols=112 Identities=19% Similarity=0.137 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhCCC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCH
Q 021051 191 ERYAALFALRNHGG-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHP 253 (318)
Q Consensus 191 ~r~~a~~~L~~~~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~ 253 (318)
+|..|..+++.+.. +..++.+.+.+++++|.+|..|+.++|.+.. +..++.|...+.|+ ++
T Consensus 337 vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~--~~ 414 (852)
T 4fdd_A 337 LRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK--KA 414 (852)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS--SH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC--CH
Confidence 48888888877632 3456777778889999999999999999865 34678888888887 89
Q ss_pred HHHHHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 254 MVRHEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 254 ~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
.||.++++++++++. ...++.|.+.+.++++.||..|+++|..+-.....+
T Consensus 415 ~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp HHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 999999999998863 246778888888999999999999999987654433
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.61 E-value=2.3e-14 Score=133.68 Aligned_cols=261 Identities=16% Similarity=0.106 Sum_probs=190.7
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------- 78 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 78 (318)
..++.|..+|.+++. ...+..+...+..+.. ...++.|.+++.+.++.++..++++|+.+..
T Consensus 185 ~~i~~L~~ll~~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~ 263 (529)
T 1jdh_A 185 GGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 263 (529)
T ss_dssp THHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSC
T ss_pred CCHHHHHHHHHhCCh-HHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHH
Confidence 467788888887774 4556566666655433 3678889999999999999999999987643
Q ss_pred -CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhcc-CCCHHHHHHHHHHHHHHHhhh
Q 021051 79 -AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVS-DPAQEVRETCELALERIEKLK 145 (318)
Q Consensus 79 -~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~-d~~~~vr~~a~~aL~~~~~~~ 145 (318)
...++.|.+++. ++++.+|..|+.+|+++... ..++.|.+.+.. +.++.++..++.+|+++. ..
T Consensus 264 ~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~-~~ 340 (529)
T 1jdh_A 264 MEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-SR 340 (529)
T ss_dssp CHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SS
T ss_pred HHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHH-cC
Confidence 246899999998 89999999999999998652 457888885543 345899999999999886 10
Q ss_pred ccCcc-ccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHH
Q 021051 146 ASGSD-GSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDS 214 (318)
Q Consensus 146 ~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~ 214 (318)
+.... .... +.....++.|..++.+++.. .+|..++++++++.. ...++.|.+.
T Consensus 341 ~~~~~~~~~~--------------i~~~~~i~~L~~lL~~~~~~-~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~l 405 (529)
T 1jdh_A 341 HQEAEMAQNA--------------VRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 405 (529)
T ss_dssp STTHHHHHHH--------------HHHTTCHHHHHHTTSTTCCH-HHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHH
T ss_pred CchHHHHHHH--------------HHHcCChhHHHHHhccccch-HHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHH
Confidence 00000 0000 00123689999999887642 359999999999863 3577888888
Q ss_pred hCCCCHHHHHHHHHHHhc--------------------------------cCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051 215 LGATSALLKHEVAYVLGQ--------------------------------LQNKAASAALSDVLRNVNEHPMVRHEAAEA 262 (318)
Q Consensus 215 l~d~~~~vr~~a~~~L~~--------------------------------~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a 262 (318)
+.+.++.+|.+++++++. +.+...++.|+.++.+. ++.++..++.+
T Consensus 406 l~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~--~~~v~~~a~~~ 483 (529)
T 1jdh_A 406 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGV 483 (529)
T ss_dssp HHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCC--chHHHHHHHHH
Confidence 887777777766655543 22345678999999987 89999999999
Q ss_pred HhccCCh----------hhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 263 LGSIADD----------QSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 263 L~~~~~~----------~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
|+++... +.++.|.+++.++++.|+..|.++|.++
T Consensus 484 l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 484 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528 (529)
T ss_dssp HHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence 9998632 5688899999999999999999999876
No 25
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=99.60 E-value=5.8e-14 Score=135.58 Aligned_cols=258 Identities=18% Similarity=0.147 Sum_probs=196.6
Q ss_pred hhhHHHHHHhhcCCCC------CHHHHHHHHHHHhcc--C--CCChHHHHHHhccCCCHHHHHHHHHHHhcc----CCCC
Q 021051 15 PEMEKFLCDRLVDPTQ------PISERFRALFSLRNL--K--GPGPRDALIRATKDSSNLLAHEAAFALGQM----QDAE 80 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~------~~~~r~~A~~~l~~~--~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~----~~~~ 80 (318)
.+..+.|.+.|.+++. +..+|..|+..||.. | .+++.+.|.+.+.+++..++..|+.+||-+ ++..
T Consensus 428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ 507 (963)
T 4ady_A 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE 507 (963)
T ss_dssp HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH
Confidence 3567788888886650 027898999999884 3 356899999999888888899999999976 4556
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHH--hcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCC
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALG--AIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERS 158 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~--~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~ 158 (318)
++..|+..+.. +.+..+|+.++.+|| .+|.++..+.+.+.+..+.+|.+|..++.+++--- ...
T Consensus 508 ai~~LL~~~~e-~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAy--aGT----------- 573 (963)
T 4ady_A 508 AIHDMFTYSQE-TQHGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAY--AGT----------- 573 (963)
T ss_dssp HHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHT--TTS-----------
T ss_pred HHHHHHHHHhc-cCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cCC-----------
Confidence 77888887663 567889999999999 56788899999887888999999999998887322 000
Q ss_pred CCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh--CCChhHHHHHHHHh-CCCCHHHHHHHHHHHhccC-
Q 021051 159 PFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN--HGGDEAVSAIIDSL-GATSALLKHEVAYVLGQLQ- 234 (318)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~--~~~~~~~~~l~~~l-~d~~~~vr~~a~~~L~~~~- 234 (318)
++..++..|+..+.++..+ .+|..|+.+||. +++++.++.+.+.+ .+.++.+|..++.+||.++
T Consensus 574 -----------Gn~~aIq~LL~~~~~d~~d-~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 574 -----------GNNSAVKRLLHVAVSDSND-DVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp -----------CCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred -----------CCHHHHHHHHHHhccCCcH-HHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 1234677777776544333 369999999997 46777778887744 6789999999999999984
Q ss_pred ---CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--h-----hhHHHH---HHhhcC--CCHHHHHHHHHHHHhchh
Q 021051 235 ---NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--D-----QSIGLL---KEFAKD--PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 235 ---~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--~-----~~~~~L---~~~l~~--~~~~vr~~a~~aL~~l~~ 299 (318)
.+++++.|..+..|. +..||..|+.+||.+|- . ...+++ .+...+ .++..+-.++.|++.+..
T Consensus 642 Gn~~~~aid~L~~L~~D~--d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a 719 (963)
T 4ady_A 642 GKGLQSAIDVLDPLTKDP--VDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNA 719 (963)
T ss_dssp SSCCHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHccCC--CHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence 346889888988887 89999999999999972 1 333333 334443 578899999999887744
Q ss_pred h
Q 021051 300 E 300 (318)
Q Consensus 300 ~ 300 (318)
+
T Consensus 720 G 720 (963)
T 4ady_A 720 G 720 (963)
T ss_dssp G
T ss_pred C
Confidence 3
No 26
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.59 E-value=2.8e-14 Score=137.33 Aligned_cols=261 Identities=18% Similarity=0.089 Sum_probs=205.3
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-C------------------------------------------Ch
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-P------------------------------------------GP 50 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~------------------------------------------~~ 50 (318)
+...++.|+++|.++++ .+...|+++|+++.. . .+
T Consensus 419 d~g~Ip~LV~LL~s~d~--~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGa 496 (810)
T 3now_A 419 DKASIHALMDLARGGNQ--SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496 (810)
T ss_dssp CHHHHHHHHHHHHTTCG--GGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTH
T ss_pred ccchHHHHHHHhCCCCh--HHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcC
Confidence 46788999999998886 889999999988754 1 36
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccCC----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC---CC-----
Q 021051 51 RDALIRATKDSSNLLAHEAAFALGQMQD----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG---LE----- 112 (318)
Q Consensus 51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~---~~----- 112 (318)
++.|++++.++++.+|..|+|+|+.+.. ..+++.|+.++. +.++.+|..|+.+|+++. ++
T Consensus 497 Vp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~--s~~~~~k~~Aa~AL~nL~~~~~p~~~~~ 574 (810)
T 3now_A 497 TTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMAL--EGTEKGKRHATQALARIGITINPEVSFS 574 (810)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--cCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence 8899999999999999999999998763 257999999999 778899999999998753 21
Q ss_pred -----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc
Q 021051 113 -----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK 187 (318)
Q Consensus 113 -----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~ 187 (318)
+.++.|..++..+.+...+..++++|.++.. .+ +..... .....+++.|..++.+++.
T Consensus 575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~--~~-d~~~~~--------------Ii~aG~l~~Lv~LL~s~~~ 637 (810)
T 3now_A 575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLAS--MN-ESVRQR--------------IIKEQGVSKIEYYLMEDHL 637 (810)
T ss_dssp THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTT--SC-HHHHHH--------------HHHTTHHHHHHHHHHSCCT
T ss_pred chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc--CC-HHHHHH--------------HHHcCCHHHHHHHHcCCCH
Confidence 2578888855444466667789999998871 00 000000 0013478999999999888
Q ss_pred ChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------------cchHHHHHH
Q 021051 188 GMYERYAALFALRNHGG-----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------------KAASAALSD 244 (318)
Q Consensus 188 ~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~ 244 (318)
.+ |..|+.+++++.. .+.++.|..++..++..++..|+.+|+.+.. ...++.|+.
T Consensus 638 ~V--q~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~ 715 (810)
T 3now_A 638 YL--TRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHT 715 (810)
T ss_dssp TH--HHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHH
T ss_pred HH--HHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHH
Confidence 75 9999999998742 3577888899999999999999999987642 467899999
Q ss_pred HHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCC---CHHHHHHHHHHHHhchh
Q 021051 245 VLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDP---EPIVSQSCEVALSMLEY 299 (318)
Q Consensus 245 ~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~l~~ 299 (318)
++.+. +..+|..|+++|.++. + .++++.|.+++++. +..+...|..+|..+..
T Consensus 716 LL~s~--d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 716 LIANP--SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHCCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 99987 8999999999998874 2 24678888887654 78999999999997744
No 27
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=99.59 E-value=2.7e-16 Score=119.37 Aligned_cols=122 Identities=20% Similarity=0.177 Sum_probs=103.3
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDF 92 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~ 92 (318)
+.+...+.+...|.|+++ .+|..|++.|+.++++. ++.|.+.|+|+++.+|..|+++||.++...+++.|..++.
T Consensus 9 ~~~~~~~~l~~~L~~~~~--~vR~~A~~~L~~~~~~~-~~~L~~~L~d~~~~vR~~A~~aL~~~~~~~a~~~L~~~L~-- 83 (131)
T 1te4_A 9 HHSSGLVPRGSHMADENK--WVRRDVSTALSRMGDEA-FEPLLESLSNEDWRIRGAAAWIIGNFQDERAVEPLIKLLE-- 83 (131)
T ss_dssp ------------CCSSCC--CSSSSCCSSTTSCSSTT-HHHHHHGGGCSCHHHHHHHHHHHGGGCSHHHHHHHHHHHH--
T ss_pred cccccHHHHHHHhcCCCH--HHHHHHHHHHHHhCchH-HHHHHHHHcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHc--
Confidence 567788999999999987 89999999999999865 6999999999999999999999999999889999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHH
Q 021051 93 SLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALER 140 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~ 140 (318)
|+++.||..|+.+|+.++++..++.|.+ +.+|+++.||..++.+|++
T Consensus 84 d~~~~VR~~A~~aL~~~~~~~a~~~L~~-~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 84 DDSGFVRSGAARSLEQIGGERVRAAMEK-LAETGTGFARKVAVNYLET 130 (131)
T ss_dssp HCCTHHHHHHHHHHHHHCSHHHHHHHHH-HTTSCCTHHHHHHHHHGGG
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhCCCHHHHHHHHHHHHh
Confidence 8999999999999999999999999999 5689999999999999875
No 28
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.58 E-value=9.5e-14 Score=135.48 Aligned_cols=279 Identities=15% Similarity=0.125 Sum_probs=201.3
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhcc-CCCHHHHHHHHHHHhccC-----
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATK-DSSNLLAHEAAFALGQMQ----- 77 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~----- 77 (318)
...++.|+.+|.++++ .+|..|+.+|+.+.. +..++.|++.|. +.++.+|..|+.+|..+.
T Consensus 149 ~g~ip~Lv~lL~~~d~--~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~ 226 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREG 226 (780)
T ss_dssp HHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHH
T ss_pred hCCHHHHHHHHCCCCH--HHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 4567888888987775 899999999988753 257888888886 458899999999987653
Q ss_pred -----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 78 -----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 78 -----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
....++.|++++. ++++.+|..|+.+|.++. ....++.|.+ ++.++++.++..+..+|..+
T Consensus 227 ~~~i~~~g~I~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~-lL~~~~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 227 LLAIFKSGGIPALVNMLG--SPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHH-HHhcCCHHHHHHHHHHHHHH
Confidence 2367899999999 788999999999998874 2457888888 55778889998888888766
Q ss_pred Hhhhcc--------Ccc---ccccccCCCCccc-------------CCC--CCCCCCccHHHHHHHHcCCCcChHHHHHH
Q 021051 142 EKLKAS--------GSD---GSSMTERSPFMSV-------------DPA--APASSCSSVDMLREVLLGEEKGMYERYAA 195 (318)
Q Consensus 142 ~~~~~~--------~~~---~~~~l~~~~~~~~-------------~~~--~~~~~~~~~~~L~~~l~~~~~~~~~r~~a 195 (318)
. ..+. .+. +..++........ .+. ..+.....++.|+.++.+.+.. ++..+
T Consensus 304 a-~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~--~~~~a 380 (780)
T 2z6g_A 304 A-YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR--LVQNC 380 (780)
T ss_dssp H-TTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHH--HHHHH
T ss_pred h-cCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchH--HHHHH
Confidence 5 1100 000 1111111100000 000 0000123567788888776554 47788
Q ss_pred HHHHHhCC--------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHH
Q 021051 196 LFALRNHG--------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVR 256 (318)
Q Consensus 196 ~~~L~~~~--------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr 256 (318)
+.+|.++. ....++.|.+++.+.++.++..|+.+|+.+.. ..+++.|++++.+..+...+|
T Consensus 381 ~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~ 460 (780)
T 2z6g_A 381 LWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 460 (780)
T ss_dssp HHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHH
Confidence 88887763 35688999999999999999999999998764 347899999998743235899
Q ss_pred HHHHHHHhccCC--------------hhhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhh
Q 021051 257 HEAAEALGSIAD--------------DQSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 257 ~~a~~aL~~~~~--------------~~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~ 301 (318)
..|+.+|+++.. ...++.|.+++.+++ +.++..|+++|+++....
T Consensus 461 ~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~ 520 (780)
T 2z6g_A 461 EPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 520 (780)
T ss_dssp HHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH
Confidence 999999999863 135788999888765 599999999999997643
No 29
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.58 E-value=6e-14 Score=138.48 Aligned_cols=259 Identities=17% Similarity=0.119 Sum_probs=191.0
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccC-------CCChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLK-------GPGPRDALIRATKDSSNLLAHEAAFALGQMQD----------- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~-------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------- 78 (318)
....+.+.|.++++ .+|..+..+++.+. .++.++.|.+.+.++++.+|..++.+|+.+..
T Consensus 91 ik~~ll~~l~~~~~--~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~ 168 (852)
T 4fdd_A 91 IKSECLNNIGDSSP--LIRATVGILITTIASKGELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVL 168 (852)
T ss_dssp HHHHHHTTTTCSSH--HHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSS
T ss_pred HHHHHHHHHcCCCH--HHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhh
Confidence 34456667777765 89999999988762 36899999999999999999999999876431
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE----------SNIPLLKNSLVSDPAQEVRETCELALERIEKL 144 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~ 144 (318)
...++.|.+.+. ++++.+|..|+.+|+.+-.. ..++.+.. +.+|+++.||..+..+|..+..
T Consensus 169 ~~~~~~il~~l~~~l~--~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~-~~~d~~~~vr~~a~~~L~~l~~- 244 (852)
T 4fdd_A 169 DRPLNIMIPKFLQFFK--HSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFA-LAGDEEPEVRKNVCRALVMLLE- 244 (852)
T ss_dssp SSCHHHHHHHHTTTTT--CSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHH-HHTCCCHHHHHHHHHHHHHHHH-
T ss_pred cchHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH-
Confidence 123556666667 88999999999999876421 34566666 5689999999999999998871
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh------------hHHHHHH
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD------------EAVSAII 212 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~------------~~~~~l~ 212 (318)
.....+...+ +..++.+...+.++++. +|..|+..+..++.. ..++.+.
T Consensus 245 -~~~~~~~~~l----------------~~l~~~l~~~~~~~~~~--vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll 305 (852)
T 4fdd_A 245 -VRMDRLLPHM----------------HNIVEYMLQRTQDQDEN--VALEACEFWLTLAEQPICKDVLVRHLPKLIPVLV 305 (852)
T ss_dssp -HCHHHHGGGH----------------HHHHHHHHHHHTCSSHH--HHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHH
T ss_pred -hCHHHHHHHH----------------HHHHHHHHHHccCCcHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 1100000000 12567777888777655 599999888877642 3456666
Q ss_pred HHh-----------CC-----------CCHHHHHHHHHHHhccCC-------cchHHHHHHHHhccCCCHHHHHHHHHHH
Q 021051 213 DSL-----------GA-----------TSALLKHEVAYVLGQLQN-------KAASAALSDVLRNVNEHPMVRHEAAEAL 263 (318)
Q Consensus 213 ~~l-----------~d-----------~~~~vr~~a~~~L~~~~~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL 263 (318)
+.+ .| .++.+|..+..+|+.+.. +..++.+.+.+.++ +|.+|.+|+.+|
T Consensus 306 ~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~--~~~~R~aa~~al 383 (852)
T 4fdd_A 306 NGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHH--EWVVKESGILVL 383 (852)
T ss_dssp HHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHH
T ss_pred HHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHH
Confidence 655 33 345679888888887642 23566677777776 899999999999
Q ss_pred hccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 264 GSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 264 ~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
|.+.. +..++.+...++|+++.||..++++++++.....
T Consensus 384 g~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 432 (852)
T 4fdd_A 384 GAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVV 432 (852)
T ss_dssp HHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 99964 3578888899999999999999999999876543
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.58 E-value=1.9e-13 Score=129.53 Aligned_cols=270 Identities=17% Similarity=0.114 Sum_probs=139.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHH----HHHhccCCCHHHHHHHHHHHhccCC--C------CcHHHHH
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDA----LIRATKDSSNLLAHEAAFALGQMQD--A------EAIPALE 86 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~----L~~~l~d~~~~vr~~a~~aL~~~~~--~------~~~~~L~ 86 (318)
..+.+.|.|+++ .+|..|+++++.++.++..+. +.+.+.|+++.||..|+.+++++.. + ..++.|.
T Consensus 89 n~l~kdL~~~n~--~ir~~AL~~L~~i~~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~ 166 (591)
T 2vgl_B 89 NSFVKDCEDPNP--LIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLR 166 (591)
T ss_dssp HHHGGGSSSSSH--HHHHHHHHHHHTCCSGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCH--HHHHHHHHHHHcCChHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHH
Confidence 344445566554 667777777766666554444 5556666677777777666665421 1 1345666
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCCCc-----------HHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc---c--
Q 021051 87 AVLNDFSLHPIVRHEAAEALGAIGLESN-----------IPLLKNSLVSDPAQEVRETCELALERIEKLKASGS---D-- 150 (318)
Q Consensus 87 ~~l~~~~~~~~vR~~a~~~L~~~~~~~~-----------~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~---~-- 150 (318)
+++. |+++.|+..|+.+|+.+..... +..|.+ ...+.++..+...+..++.+.. .... .
T Consensus 167 ~lL~--d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~-~l~~~~~~~q~~il~~l~~l~~--~~~~~~~~~l 241 (591)
T 2vgl_B 167 DLIA--DSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT-ALNECTEWGQIFILDCLSNYNP--KDDREAQSIC 241 (591)
T ss_dssp HTTS--CSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH-HHHHCCHHHHHHHHHHHHTSCC--CSHHHHHHHH
T ss_pred HHhC--CCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH-cCCCCCchHHHHHHHHHHHhCC--CChHHHHHHH
Confidence 6666 6666777777777666653221 333444 2235556666555555554430 0000 0
Q ss_pred --ccccccCCCCcccC--------CCCCC-CCCccH--------HHHHHHHcCCCcChHHHHHHHHHHHhCCC--hhHHH
Q 021051 151 --GSSMTERSPFMSVD--------PAAPA-SSCSSV--------DMLREVLLGEEKGMYERYAALFALRNHGG--DEAVS 209 (318)
Q Consensus 151 --~~~~l~~~~~~~~~--------~~~~~-~~~~~~--------~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--~~~~~ 209 (318)
+...+......... -.... .+++.+ +.|+.+ .++++. +|+.++.+++.+.. ++.+.
T Consensus 242 ~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L-~~~d~~--vr~~aL~~l~~i~~~~p~~~~ 318 (591)
T 2vgl_B 242 ERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTL-LSGEPE--VQYVALRNINLIVQKRPEILK 318 (591)
T ss_dssp HHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHH-TTSCHH--HHHHHHHHHHHHHHHCCSTTT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHH-hcCCcc--HHHHHHHHHHHHHHhChHHHH
Confidence 11111111000000 00000 011222 223332 233333 36666666665521 11111
Q ss_pred H-HHH--HhCCCCHHHHHHHHHHHhccCCcch----HHHHHHHHhccCCCHHHHHHHHHHHhccCC------hhhHHHHH
Q 021051 210 A-IID--SLGATSALLKHEVAYVLGQLQNKAA----SAALSDVLRNVNEHPMVRHEAAEALGSIAD------DQSIGLLK 276 (318)
Q Consensus 210 ~-l~~--~l~d~~~~vr~~a~~~L~~~~~~~~----~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~------~~~~~~L~ 276 (318)
. +.. ++.+.++.+|..++..|..+.++.. ++.|..++.+. ++.+|..++++++.++. ...++.|.
T Consensus 319 ~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~--d~~~r~~~v~aI~~la~~~~~~~~~~v~~Ll 396 (591)
T 2vgl_B 319 QEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEV--DVDFVRKAVRAIGRCAIKVEQSAERCVSTLL 396 (591)
T ss_dssp TCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0 000 1113347777788888777776543 34444555554 78888888888887753 34677777
Q ss_pred HhhcCCCHHHHHHHHHHHHhchhh
Q 021051 277 EFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 277 ~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+++.+....++..++.++..+-..
T Consensus 397 ~ll~~~~~~v~~e~i~~l~~ii~~ 420 (591)
T 2vgl_B 397 DLIQTKVNYVVQEAIVVIRDIFRK 420 (591)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcccchHHHHHHHHHHHHHHHH
Confidence 777777777887777777776443
No 31
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.57 E-value=6.8e-13 Score=123.66 Aligned_cols=265 Identities=14% Similarity=0.131 Sum_probs=204.4
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------ 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------ 78 (318)
...++.|++.|.+.+ ++.+|..|+..|..+.. ...++.|.++++++++.++..++++|+.+..
T Consensus 58 ~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 136 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136 (529)
T ss_dssp HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHH
T ss_pred cchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchH
Confidence 467888999997553 35899999999988754 3689999999999999999999999987631
Q ss_pred -----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 79 -----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 79 -----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
...++.|++++. ++++.+|..++.+|..+. ..+.++.|...+....+..++..+..+|..+.
T Consensus 137 ~~i~~~g~i~~L~~ll~--~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~ 214 (529)
T 1jdh_A 137 MAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 214 (529)
T ss_dssp HHHHHHTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHh--cCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHh
Confidence 367899999999 789999999888887653 23567888885655556667777778887776
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDS 214 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~ 214 (318)
. .... ... +.....++.|..++.+++.. ++..++++|.++.. ...++.|.++
T Consensus 215 ~---~~~~-~~~--------------~~~~g~~~~L~~ll~~~~~~--~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~l 274 (529)
T 1jdh_A 215 V---CSSN-KPA--------------IVEAGGMQALGLHLTDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 274 (529)
T ss_dssp T---STTH-HHH--------------HHHTTHHHHHHTTTTSSCHH--HHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHH
T ss_pred c---Cccc-HHH--------------HHHCCCHHHHHHHHhCCChH--HHHHHHHHHHHHhcCChhhHHHHhHHHHHHHH
Confidence 1 0000 000 00124688999999887655 48889999988732 4688999999
Q ss_pred hCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--------------
Q 021051 215 LGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-------------- 269 (318)
Q Consensus 215 l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-------------- 269 (318)
+.+.++.++..++.+|+.+.. ..+++.|++++.+.++++.++..|+.+|+++...
T Consensus 275 l~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~ 354 (529)
T 1jdh_A 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354 (529)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHc
Confidence 999999999999999999865 2468999999987544689999999999988531
Q ss_pred hhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhhc
Q 021051 270 QSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 ~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~~ 302 (318)
+.++.|.+++.++. +.++..++++|.++..+..
T Consensus 355 ~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~ 388 (529)
T 1jdh_A 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388 (529)
T ss_dssp TCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred CChhHHHHHhccccchHHHHHHHHHHHHHhcChh
Confidence 46888999998865 6999999999999886543
No 32
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.56 E-value=5.9e-13 Score=111.75 Aligned_cols=194 Identities=22% Similarity=0.276 Sum_probs=149.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKDSSNLLAHEAAFALGQMQDA------ 79 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 79 (318)
.++.|.+.|.++++ .+|..|++.|+.+... ..++.|.+++.++++.+|..++++|+.+...
T Consensus 3 ~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 3 DVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 47889999999886 9999999999888542 5799999999999999999999999998864
Q ss_pred -----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC-----------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHh
Q 021051 80 -----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE-----------SNIPLLKNSLVSDPAQEVRETCELALERIEK 143 (318)
Q Consensus 80 -----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~-----------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~ 143 (318)
..++.|..++. ++++.+|..|+.+|+++... +.++.|.+ +..++++.++..++.+|+++..
T Consensus 81 ~~~~~~~i~~l~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~~~~~~~~a~~~L~~l~~ 157 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTSTDSEVQKEAARALANIAS 157 (252)
T ss_dssp HHHHTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCCCHHHHHHHHHHHHHHHc
Confidence 57999999999 88999999999999998732 46777888 5677888888888888887760
Q ss_pred hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHH
Q 021051 144 LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLK 223 (318)
Q Consensus 144 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr 223 (318)
.++. +. ..+. ....++.|.+++.++++.++
T Consensus 158 -----------------------------------------~~~~---~~---~~~~---~~~~i~~L~~ll~~~~~~v~ 187 (252)
T 4hxt_A 158 -----------------------------------------GPDE---AI---KAIV---DAGGVEVLVKLLTSTDSEVQ 187 (252)
T ss_dssp -----------------------------------------SCHH---HH---HHHH---HTTHHHHHHHHTTCSCHHHH
T ss_pred -----------------------------------------CCHH---HH---HHHH---HCcCHHHHHHHHCCCCHHHH
Confidence 0000 00 0000 12355666666666666666
Q ss_pred HHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 224 HEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 224 ~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
..++.+|+.+.. ...++.|++++.+. ++.+|..|+++|+++.
T Consensus 188 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 188 KEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST--DSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC--cHHHHHHHHHHHHHHH
Confidence 666666666542 34678999999876 8999999999999875
No 33
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=99.55 E-value=1.9e-13 Score=129.49 Aligned_cols=258 Identities=13% Similarity=0.133 Sum_probs=183.2
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhc---cCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------CcHH
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRN---LKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------EAIP 83 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~---~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------~~~~ 83 (318)
...+..+.+.|.+++. ..|..++.-+-. .|. +.....+++++.+++..+|..+..++..+... ..+.
T Consensus 12 ~~e~~~i~~~L~~~~~--~~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~~l~~n 89 (591)
T 2vgl_B 12 KGEIFELKAELNNEKK--EKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMAIMAVN 89 (591)
T ss_dssp SSHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHHHTTHH
T ss_pred CChHHHHHHHHcCCCH--HHHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHHHHHHH
Confidence 3467889999998875 666665554421 232 35677788888999999998777777665431 2345
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCC
Q 021051 84 ALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSP 159 (318)
Q Consensus 84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~ 159 (318)
.|.+-+. ++++.+|..|+++|++++.++..+. +.+ +..|+++.||+.|+.++.++.. ...+. +
T Consensus 90 ~l~kdL~--~~n~~ir~~AL~~L~~i~~~~~~~~l~~~l~~-~L~d~~~~VRk~A~~al~~i~~--~~p~~----~---- 156 (591)
T 2vgl_B 90 SFVKDCE--DPNPLIRALAVRTMGCIRVDKITEYLCEPLRK-CLKDEDPYVRKTAAVCVAKLHD--INAQM----V---- 156 (591)
T ss_dssp HHGGGSS--SSSHHHHHHHHHHHHTCCSGGGHHHHHHHHHH-HSSCSCHHHHHHHHHHHHHHHH--SSCCC----H----
T ss_pred HHHHHcC--CCCHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HcCCCChHHHHHHHHHHHHHHh--hChhh----c----
Confidence 5566666 8999999999999999998776555 777 5679999999999999998861 11100 0
Q ss_pred CcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh-----------hHHHHHHHHhCCCCHHHHHHHHH
Q 021051 160 FMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD-----------EAVSAIIDSLGATSALLKHEVAY 228 (318)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~-----------~~~~~l~~~l~d~~~~vr~~a~~ 228 (318)
. ....++.|..++.|+++. |+..|+.+|+.++.. ..+..|.+.+.+.++..+..++.
T Consensus 157 -~---------~~~~~~~l~~lL~d~d~~--V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~ 224 (591)
T 2vgl_B 157 -E---------DQGFLDSLRDLIADSNPM--VVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD 224 (591)
T ss_dssp -H---------HHHHHHHHHHTTSCSCHH--HHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred -c---------cccHHHHHHHHhCCCChh--HHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHH
Confidence 0 012467888888777665 599999999888643 23667777777888888999999
Q ss_pred HHhccCCc------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC-----hhhH--------HHHHHhhcCCCHHHHHH
Q 021051 229 VLGQLQNK------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD-----DQSI--------GLLKEFAKDPEPIVSQS 289 (318)
Q Consensus 229 ~L~~~~~~------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~-----~~~~--------~~L~~~l~~~~~~vr~~ 289 (318)
+++.+... ..++.+...+++. ++.|+.+|++++..+.. ++.+ +.|..++ ++++.+|..
T Consensus 225 ~l~~l~~~~~~~~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~ 301 (591)
T 2vgl_B 225 CLSNYNPKDDREAQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLL-SGEPEVQYV 301 (591)
T ss_dssp HHHTSCCCSHHHHHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHT-TSCHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHh-cCCccHHHH
Confidence 99988753 3455566666665 78999999999988752 2322 3344443 478899999
Q ss_pred HHHHHHhchhhhc
Q 021051 290 CEVALSMLEYEQL 302 (318)
Q Consensus 290 a~~aL~~l~~~~~ 302 (318)
++.+|..+.....
T Consensus 302 aL~~l~~i~~~~p 314 (591)
T 2vgl_B 302 ALRNINLIVQKRP 314 (591)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCh
Confidence 9999998876533
No 34
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.55 E-value=2.3e-13 Score=114.64 Aligned_cols=217 Identities=22% Similarity=0.255 Sum_probs=119.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCC
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLH 95 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~ 95 (318)
...+.+.+.|.++++ .+|..|++.|..+-.. +...+.. +.....++.|++++. +++
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~-------------~~~~~~~-------~~~~g~i~~L~~lL~--~~~ 67 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSD-------------GNEQIQA-------VIDAGALPALVQLLS--SPN 67 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHH-------------HHHHHHH-------HHHTTHHHHHHHGGG--CSC
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcC-------------CCchHHH-------HHHcCcHHHHHHHHc--CCC
Confidence 346677777777776 6777777776442110 0000000 001244555555555 445
Q ss_pred HHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051 96 PIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD 164 (318)
Q Consensus 96 ~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (318)
+.+|..|+.+|+++.. .+.++.|.. +++++++.+|..++++|+++.. ........
T Consensus 68 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~---------- 133 (252)
T 4db8_A 68 EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS---GGNEQIQA---------- 133 (252)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTT---SCHHHHHH----------
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHH-HHcCCCHHHHHHHHHHHHHhhc---CCchHHHH----------
Confidence 5555555555555543 246777777 5567778888888888887760 00000000
Q ss_pred CCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHH
Q 021051 165 PAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSD 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~ 244 (318)
+.....++.|+.++.++++. +|..++.+|+++.... +..+... .+..+++.|+.
T Consensus 134 ----~~~~~~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~-------------~~~~~~~-------~~~~~i~~L~~ 187 (252)
T 4db8_A 134 ----VIDAGALPALVQLLSSPNEQ--ILQEALWALSNIASGG-------------NEQIQAV-------IDAGALPALVQ 187 (252)
T ss_dssp ----HHHTTHHHHHHHGGGCSCHH--HHHHHHHHHHHHTTSC-------------HHHHHHH-------HHTTCHHHHHH
T ss_pred ----HHHCCCHHHHHHHHhCCCHH--HHHHHHHHHHHHHcCC-------------hHHHHHH-------HHCCCHHHHHH
Confidence 00012344444444444332 2444444444443210 0000000 01345677777
Q ss_pred HHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 245 VLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 245 ~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
++.+. ++.+|..|+.+|+++. + .++++.|.+++.++++.+|..|.++|.++.
T Consensus 188 ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~ 250 (252)
T 4db8_A 188 LLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 250 (252)
T ss_dssp GGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC
T ss_pred HHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 77765 6777777777777774 2 246788888888888999999999998875
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.55 E-value=1.3e-12 Score=125.13 Aligned_cols=265 Identities=14% Similarity=0.133 Sum_probs=205.5
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC-------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------- 77 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------- 77 (318)
...++.|++.|.+.+ +..+|..|+..|..+.. ...++.|++++.++++.+|..|+++|+.+.
T Consensus 55 ~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~ 133 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133 (644)
T ss_dssp HHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHH
T ss_pred cChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhH
Confidence 467888999998653 24899999999887653 468999999999999999999999998764
Q ss_pred ----CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 78 ----DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 78 ----~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
....++.|+.++. ++++.++..++.+|..+.. .+.++.|..++.......++..+..+|.++.
T Consensus 134 ~~v~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs 211 (644)
T 2z6h_A 134 MAVRLAGGLQKMVALLN--KTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLS 211 (644)
T ss_dssp HHHHHTTHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHCCChHHHHHHHC--cCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHh
Confidence 2467999999999 7788999888777776542 3568888886655556788888888888876
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--------hhHHHHHHHH
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------DEAVSAIIDS 214 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------~~~~~~l~~~ 214 (318)
. .... ... +....+++.|..++.+++.. ++..++.+|.++.. ...++.|.++
T Consensus 212 ~---~~~~-~~~--------------l~~~g~l~~L~~ll~~~~~~--~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~l 271 (644)
T 2z6h_A 212 V---CSSN-KPA--------------IVEAGGMQALGLHLTDPSQR--LVQNCLWTLRNLSDAATKQEGMEGLLGTLVQL 271 (644)
T ss_dssp T---CTTH-HHH--------------HHHTTHHHHHHTTTTCSCHH--HHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHH
T ss_pred c---Cccc-HHH--------------HHHCCCHHHHHHHHhcCCHH--HHHHHHHHHHHHhhcchhhhhhhhHHHHHHHH
Confidence 1 0000 000 00123688999999887655 59999999988743 4688999999
Q ss_pred hCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC--------------h
Q 021051 215 LGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD--------------D 269 (318)
Q Consensus 215 l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--------------~ 269 (318)
+.+.++.++..++.+|+.+.. ..+++.|+.++.+.++.+.++..|+.+|+++.. .
T Consensus 272 L~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~ 351 (644)
T 2z6h_A 272 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 351 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHc
Confidence 999999999999999988754 236899999998753348999999999999853 1
Q ss_pred hhHHHHHHhhcCCC-HHHHHHHHHHHHhchhhhc
Q 021051 270 QSIGLLKEFAKDPE-PIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 ~~~~~L~~~l~~~~-~~vr~~a~~aL~~l~~~~~ 302 (318)
..++.|.+++.++. +.++..|+++|+++.....
T Consensus 352 ~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~ 385 (644)
T 2z6h_A 352 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 385 (644)
T ss_dssp THHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred cChHHHHHHhCccCchHHHHHHHHHHHHHccCHH
Confidence 46888999988764 7999999999999876543
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.54 E-value=7.1e-14 Score=136.35 Aligned_cols=268 Identities=15% Similarity=0.086 Sum_probs=196.1
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC----------CChHHHHHHhccCCCHHHHHHHHHHHhccC-------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG----------PGPRDALIRATKDSSNLLAHEAAFALGQMQ------- 77 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------- 77 (318)
...++.|.++|.+.+. ...+..++.++..+.. ..+++.|..++.+.++.++..++++|..+.
T Consensus 317 ~~~i~~Lv~lL~~~~~-~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~ 395 (780)
T 2z6g_A 317 SGGPQALVNIMRTYTY-EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 395 (780)
T ss_dssp TTHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred cCCHHHHHHHHhcCCH-HHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh
Confidence 3567888899998875 3344445555544322 356788888999999999999999998764
Q ss_pred -CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCC-HHHHHHHHHHHHHHHhh
Q 021051 78 -DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPA-QEVRETCELALERIEKL 144 (318)
Q Consensus 78 -~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~-~~vr~~a~~aL~~~~~~ 144 (318)
....++.|+.++. ++++.+|..|+.+|+++.. ...++.|.+.+....+ +.++..++.+|+++. .
T Consensus 396 ~~~~~i~~Lv~lL~--~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~-~ 472 (780)
T 2z6g_A 396 GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLT-S 472 (780)
T ss_dssp CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-S
T ss_pred hhhhHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH-h
Confidence 2346899999999 8999999999999998864 3467888885544333 589999999999886 1
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHHHHHHH
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVSAIIDS 214 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~~l~~~ 214 (318)
.+..... . . ..+.....++.|.++|.+++.. .+|..++.+|+++.. ...++.|+++
T Consensus 473 ~~~~~~~---~-------~---~~v~~~~~l~~L~~lL~~~~~~-~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~l 538 (780)
T 2z6g_A 473 RHQDAEM---A-------Q---NAVRLHYGLPVVVKLLHPPSHW-PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQL 538 (780)
T ss_dssp SSTTHHH---H-------H---HHHHHTTCHHHHHHTTSTTCCH-HHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHH
T ss_pred cCchHHH---H-------H---HHHHHcCCHHHHHHHhcCCChH-HHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHH
Confidence 1000000 0 0 0000123689999999877652 359999999998853 3567778777
Q ss_pred hCCCC----------------------HHHHHHHHHHHhccC----------CcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051 215 LGATS----------------------ALLKHEVAYVLGQLQ----------NKAASAALSDVLRNVNEHPMVRHEAAEA 262 (318)
Q Consensus 215 l~d~~----------------------~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~a 262 (318)
+.+.+ ..++..++.+|+.+. ...+++.|++++.+. ++.++..++.+
T Consensus 539 L~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~--~~~v~~~a~~a 616 (780)
T 2z6g_A 539 LVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSP--IENIQRVAAGV 616 (780)
T ss_dssp HHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCS--CHHHHHHHHHH
T ss_pred HHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCC--CHHHHHHHHHH
Confidence 75433 345666777777743 356789999999987 89999999999
Q ss_pred HhccCC----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 263 LGSIAD----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 263 L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
|+.+.. .++++.|.+++.++++.||..|.++|.++.....
T Consensus 617 L~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~ 666 (780)
T 2z6g_A 617 LCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP 666 (780)
T ss_dssp HHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence 988642 3468889999999999999999999999987554
No 37
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.52 E-value=3e-13 Score=129.47 Aligned_cols=263 Identities=16% Similarity=0.097 Sum_probs=204.6
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhccC-CCHHHHHHHHHHHhccC---
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATKD-SSNLLAHEAAFALGQMQ--- 77 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~--- 77 (318)
+....++.|.++|.++++ .+|..|+..|+.+... ..++.|++.|.+ .++.+|..|+.+|..+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~--~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQ--VVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR 88 (644)
T ss_dssp -CTTTHHHHHHHHTCSCH--HHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSH
T ss_pred hhhchHHHHHHHHcCCCH--HHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCh
Confidence 556689999999998876 9999999999887541 357888888865 48999999999998755
Q ss_pred -------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-----------CCCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 78 -------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-----------LESNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 78 -------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-----------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
....++.|++++. ++++.+|..|+.+|.++. ....++.|.+ ++.++++.++..++.+|.
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~ 165 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLG--SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKTNVKFLAITTDCLQ 165 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHh--CCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH-HHCcCCHHHHHHHHHHHH
Confidence 3368999999999 789999999999998874 2467899999 667888999999988998
Q ss_pred HHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------hhHHH
Q 021051 140 RIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----------DEAVS 209 (318)
Q Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------~~~~~ 209 (318)
.+. . ........ +.....++.|+.++.+.+.. .++..++.+|.++.. ..+++
T Consensus 166 ~La-~--~~~~~~~~--------------i~~~g~v~~Lv~lL~~~~~~-~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~ 227 (644)
T 2z6h_A 166 ILA-Y--GNQESKLI--------------ILASGGPQALVNIMRTYTYE-KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQ 227 (644)
T ss_dssp HHH-T--TCHHHHHH--------------HHHTTHHHHHHHHHTTCCCH-HHHHHHHHHHHHHTTCTTHHHHHHHTTHHH
T ss_pred HHH-h--cCcHHHHH--------------HHHcCChHHHHHHHHcCChH-HHHHHHHHHHHHHhcCcccHHHHHHCCCHH
Confidence 876 1 00000000 00124688999999877543 357778888777643 24678
Q ss_pred HHHHHhCCCCHHHHHHHHHHHhccCC--------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-----------h
Q 021051 210 AIIDSLGATSALLKHEVAYVLGQLQN--------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-----------Q 270 (318)
Q Consensus 210 ~l~~~l~d~~~~vr~~a~~~L~~~~~--------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-----------~ 270 (318)
.|.+++.+.+..++..++.+|+.+.. ...++.|+.++.+. ++.+|..|+++|+.+... +
T Consensus 228 ~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g 305 (644)
T 2z6h_A 228 ALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVG 305 (644)
T ss_dssp HHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence 88888999999999999999988753 35789999999976 899999999999998532 3
Q ss_pred hHHHHHHhhcC-C-CHHHHHHHHHHHHhchhh
Q 021051 271 SIGLLKEFAKD-P-EPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 271 ~~~~L~~~l~~-~-~~~vr~~a~~aL~~l~~~ 300 (318)
.++.|..++.+ + .+.++..|+.+|.++...
T Consensus 306 ~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~ 337 (644)
T 2z6h_A 306 GIEALVRTVLRAGDREDITEPAICALRHLTSR 337 (644)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred CHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence 68888888765 3 379999999999999753
No 38
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.52 E-value=6.1e-13 Score=126.56 Aligned_cols=122 Identities=20% Similarity=0.120 Sum_probs=89.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh----HHHHHHhccCCCHHHHHHHHHHHhccC--CC----CcHHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP----RDALIRATKDSSNLLAHEAAFALGQMQ--DA----EAIPALE 86 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~----~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~----~~~~~L~ 86 (318)
.+..|.+-|.|+++ .+|..|+++++.++.++. .+.+.+++.|+++.||..|+.+++++. .+ ..++.+.
T Consensus 108 ~in~l~kDL~~~n~--~vr~lAL~~L~~i~~~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~ 185 (618)
T 1w63_A 108 MTNCIKNDLNHSTQ--FVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFLPATK 185 (618)
T ss_dssp HHHHHHHHHSCSSS--HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTT
T ss_pred HHHHHHHhcCCCCH--hHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 45567777888887 899999999999887655 666777778889999999999887764 12 3456666
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhcCCCC---------cHHHHHhhhcc--------------CCCHHHHHHHHHHHHHHH
Q 021051 87 AVLNDFSLHPIVRHEAAEALGAIGLES---------NIPLLKNSLVS--------------DPAQEVRETCELALERIE 142 (318)
Q Consensus 87 ~~l~~~~~~~~vR~~a~~~L~~~~~~~---------~~~~L~~~l~~--------------d~~~~vr~~a~~aL~~~~ 142 (318)
+++. |+|+.|+..|+.+|+.+...+ .++.|.+.+.+ .++|..+..++..|+.++
T Consensus 186 ~lL~--D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~ 262 (618)
T 1w63_A 186 NLLN--EKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILG 262 (618)
T ss_dssp TSTT--CCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHT
T ss_pred HHhC--CCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhC
Confidence 7777 888999999999888877432 24445442221 357888888888888776
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.50 E-value=1e-12 Score=110.66 Aligned_cols=176 Identities=25% Similarity=0.332 Sum_probs=119.8
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-----
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----- 111 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----- 111 (318)
...++.|+++|.++++.+|..|+++|+.+.. ...++.|..++. ++++.+|..|+.+|+++..
T Consensus 53 ~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~ 130 (252)
T 4db8_A 53 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQ 130 (252)
T ss_dssp TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHhhcCCchH
Confidence 3689999999999999999999999999875 247999999999 7899999999999998864
Q ss_pred ------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051 112 ------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE 185 (318)
Q Consensus 112 ------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 185 (318)
.+.++.|.+ +..++++.+|..++++|+++.. ..+.....+ .....++.|+.++.++
T Consensus 131 ~~~~~~~~~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~--------------~~~~~i~~L~~ll~~~ 192 (252)
T 4db8_A 131 IQAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS---GGNEQIQAV--------------IDAGALPALVQLLSSP 192 (252)
T ss_dssp HHHHHHTTHHHHHHH-GGGCSCHHHHHHHHHHHHHHTT---SCHHHHHHH--------------HHTTCHHHHHHGGGCS
T ss_pred HHHHHHCCCHHHHHH-HHhCCCHHHHHHHHHHHHHHHc---CChHHHHHH--------------HHCCCHHHHHHHHCCC
Confidence 246788999 6688899999999999999871 000000000 0012344555555444
Q ss_pred CcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 186 EKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 186 ~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
++. +|..|+.+|+++... ++..+... ....+++.|+.++.+. ++.+|..|+++|++
T Consensus 193 ~~~--v~~~a~~~L~~l~~~-------------~~~~~~~~-------~~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~ 248 (252)
T 4db8_A 193 NEQ--ILQEALWALSNIASG-------------GNEQKQAV-------KEAGALEKLEQLQSHE--NEKIQKEAQEALEK 248 (252)
T ss_dssp SHH--HHHHHHHHHHHHTTS-------------CHHHHHHH-------HHTTHHHHHHTTTTCS--SSHHHHTHHHHHHT
T ss_pred CHH--HHHHHHHHHHHHhcC-------------CHHHHHHH-------HHCCcHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence 332 244444444444210 11111100 0134678888888876 78999999999988
Q ss_pred cC
Q 021051 266 IA 267 (318)
Q Consensus 266 ~~ 267 (318)
+.
T Consensus 249 l~ 250 (252)
T 4db8_A 249 LQ 250 (252)
T ss_dssp TC
T ss_pred Hh
Confidence 74
No 40
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.48 E-value=4.6e-15 Score=123.59 Aligned_cols=186 Identities=22% Similarity=0.204 Sum_probs=140.1
Q ss_pred HhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHH
Q 021051 23 DRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEA 102 (318)
Q Consensus 23 ~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a 102 (318)
.++.|+++ .+|..++..+. ...+..+++|+++.||..++..|. .+.|..++. |+++.||..+
T Consensus 57 ~ll~d~~~--~VR~~AA~~l~-------~~~l~~L~~D~~~~VR~~aA~~L~-------~~~L~~ll~--D~d~~VR~~a 118 (244)
T 1lrv_A 57 QYLADPFW--ERRAIAVRYSP-------VEALTPLIRDSDEVVRRAVAYRLP-------REQLSALMF--DEDREVRITV 118 (244)
T ss_dssp GGTTCSSH--HHHHHHHTTSC-------GGGGGGGTTCSSHHHHHHHHTTSC-------SGGGGGTTT--CSCHHHHHHH
T ss_pred HHhcCCCH--HHHHHHHHhCC-------HHHHHHHccCcCHHHHHHHHHHCC-------HHHHHHHHc--CCCHHHHHHH
Confidence 55677776 99999999652 345777789999999999998653 256777888 9999999999
Q ss_pred HHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHH
Q 021051 103 AEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVL 182 (318)
Q Consensus 103 ~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l 182 (318)
+..+ . .+.|.. +.+|+++.||..++.. +. .+.+..++
T Consensus 119 A~~l---~----~~~L~~-L~~D~d~~VR~~aA~~---l~--------------------------------~~~l~~l~ 155 (244)
T 1lrv_A 119 ADRL---P----LEQLEQ-MAADRDYLVRAYVVQR---IP--------------------------------PGRLFRFM 155 (244)
T ss_dssp HHHS---C----TGGGGG-GTTCSSHHHHHHHHHH---SC--------------------------------GGGGGGTT
T ss_pred HHhC---C----HHHHHH-HHcCCCHHHHHHHHHh---cC--------------------------------HHHHHHHH
Confidence 9864 2 234555 7799999999998873 22 12234455
Q ss_pred cCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051 183 LGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEA 262 (318)
Q Consensus 183 ~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a 262 (318)
.|+++. ||..++..+ +. +.+..+++|+++.||..++..+ ..+.|..++.|+ +|.||.+++..
T Consensus 156 ~D~d~~--VR~~aa~~l---~~----~ll~~ll~D~d~~VR~aaa~~l-------~~~~L~~Ll~D~--d~~VR~~aa~~ 217 (244)
T 1lrv_A 156 RDEDRQ--VRKLVAKRL---PE----ESLGLMTQDPEPEVRRIVASRL-------RGDDLLELLHDP--DWTVRLAAVEH 217 (244)
T ss_dssp TCSCHH--HHHHHHHHS---CG----GGGGGSTTCSSHHHHHHHHHHC-------CGGGGGGGGGCS--SHHHHHHHHHH
T ss_pred cCCCHH--HHHHHHHcC---CH----HHHHHHHcCCCHHHHHHHHHhC-------CHHHHHHHHcCC--CHHHHHHHHHc
Confidence 666665 598888763 22 3455677999999999999874 235688888887 99999999999
Q ss_pred HhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 263 LGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 263 L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
++ .+.|..+ +|++..||..+..+|+
T Consensus 218 l~-------~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 218 AS-------LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp SC-------HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred CC-------HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 87 3666667 9999999999987654
No 41
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.47 E-value=1.8e-12 Score=118.45 Aligned_cols=258 Identities=15% Similarity=0.088 Sum_probs=181.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCC--CHHHHHHHHHHHhccCC---------
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDS--SNLLAHEAAFALGQMQD--------- 78 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~--------- 78 (318)
...|+..|.++++ .+ ..+..+++.+ ..++.++.|.+.+.++ ++.+|..++.+|+.+..
T Consensus 92 k~~ll~~l~~~~~--~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~ 168 (462)
T 1ibr_B 92 KNYVLQTLGTETY--RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQD 168 (462)
T ss_dssp HHHHHHHTTCCCS--SS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGG
T ss_pred HHHHHHHhCCCCc--hh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHh
Confidence 3446777887775 45 5555554432 2368999999999888 99999999999987542
Q ss_pred --CCcHHHHHHhhhcCCC--CHHHHHHHHHHHHhcCC-------C----C-cHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 79 --AEAIPALEAVLNDFSL--HPIVRHEAAEALGAIGL-------E----S-NIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 79 --~~~~~~L~~~l~~~~~--~~~vR~~a~~~L~~~~~-------~----~-~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
...++.+...+. ++ ++.||..|+.+++.+-. . . .++.+.. +..++++.+|..+..++..+.
T Consensus 169 ~~~~ll~~l~~~l~--~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~vr~~~~~~l~~l~ 245 (462)
T 1ibr_B 169 KSNEILTAIIQGMR--KEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIM 245 (462)
T ss_dssp GHHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHHH
Confidence 124566777777 55 79999999999986421 1 1 2455555 557889999999999999887
Q ss_pred hhhccCccccccccCCCCcccCCCCCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----------------
Q 021051 143 KLKASGSDGSSMTERSPFMSVDPAAPASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGG----------------- 204 (318)
Q Consensus 143 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----------------- 204 (318)
. .....+... -. ..++.++..+.+.++. +|..++..+..+..
T Consensus 246 ~--~~~~~~~~~----------------~~~~l~~~~~~~~~~~~~~--v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 305 (462)
T 1ibr_B 246 S--LYYQYMETY----------------MGPALFAITIEAMKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGR 305 (462)
T ss_dssp H--HCGGGCTTT----------------TTTTHHHHHHHHHHCSSHH--HHHHHHHHHHHHHHHHHHHHHHHCCTTCSSS
T ss_pred H--HHHHHHHHH----------------HHHHHHHHHHHHHcCCchH--HHHHHHHHHHHHHHHHHHHHHhcccccccCC
Confidence 2 111100000 02 4677777888777665 48888887665432
Q ss_pred --------------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhccCC---cc----hHHHHHHHHhccCCCHHHH
Q 021051 205 --------------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQLQN---KA----ASAALSDVLRNVNEHPMVR 256 (318)
Q Consensus 205 --------------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~---~~----~~~~L~~~l~~~~~~~~vr 256 (318)
...++.+.+.+. +.++.+|..|+.+|+.+.. .. .++.+...+.+. +|.+|
T Consensus 306 ~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~~~~~~~l~~~l~~~--~~~~r 383 (462)
T 1ibr_B 306 PPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYR 383 (462)
T ss_dssp CSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHTTCS--SHHHH
T ss_pred CccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCC--ChHHH
Confidence 234455555553 2357889999888887532 23 455566666765 89999
Q ss_pred HHHHHHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 257 HEAAEALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 257 ~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
.+|+.++|.+.. +..++.+...++|+++.||..|+++|+++......
T Consensus 384 ~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 384 DAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp HHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 999999999863 34788999999999999999999999999876554
No 42
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.44 E-value=3.4e-11 Score=112.23 Aligned_cols=268 Identities=16% Similarity=0.075 Sum_probs=194.1
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC-
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA- 79 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~- 79 (318)
.+....++.|+++|.++++ .++..|+..|..+.. ...++.|+++|.++++.++..|+++|+.+...
T Consensus 44 ~~~~~~i~~LV~~L~s~~~--~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 44 NWRQPELPEVIAMLGFRLD--AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCCHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSS
T ss_pred CcccccHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccC
Confidence 4556689999999999886 899999999977643 36899999999999999999999999987752
Q ss_pred -----------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC---------CcHHHHHhhhc----------------
Q 021051 80 -----------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------SNIPLLKNSLV---------------- 123 (318)
Q Consensus 80 -----------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------~~~~~L~~~l~---------------- 123 (318)
.+++.|+.+|.. ..+..++..+..+|.++... ..++.|.+++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s-~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~ 200 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRK-ARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKP 200 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHH-CCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC---------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcC-CCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccc
Confidence 479999999993 36788999988888776532 24667777331
Q ss_pred -cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC----CCcChHHHHHHHHH
Q 021051 124 -SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG----EEKGMYERYAALFA 198 (318)
Q Consensus 124 -~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~----~~~~~~~r~~a~~~ 198 (318)
...++.|+..+..+|.++.. ..... ... +. . ....++.|+.++.+ .+........|+.+
T Consensus 201 ~~~~d~~V~~nAa~~L~NLs~--~~~~~-R~~-----i~--~------~~Gli~~LV~~L~~~~~~~~~~~~~~enav~a 264 (584)
T 3l6x_A 201 RHIEWESVLTNTAGCLRNVSS--ERSEA-RRK-----LR--E------CDGLVDALIFIVQAEIGQKDSDSKLVENCVCL 264 (584)
T ss_dssp -CCCCHHHHHHHHHHHHHHTS--SCHHH-HHH-----HH--H------STTHHHHHHHHHHHHHHTTCCSCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhc--CCHHH-HHH-----HH--H------cCCcHHHHHHHHHHhhcccCccHHHHHHHHHH
Confidence 12368999999999999861 00000 000 00 0 01246677777753 22222346677777
Q ss_pred HHhCC------------------------------------ChhHHHHHHHHhC-CCCHHHHHHHHHHHhccC-------
Q 021051 199 LRNHG------------------------------------GDEAVSAIIDSLG-ATSALLKHEVAYVLGQLQ------- 234 (318)
Q Consensus 199 L~~~~------------------------------------~~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~~------- 234 (318)
|.++. ...+++.++.++. ..++.++..|+.+|..+.
T Consensus 265 L~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~ 344 (584)
T 3l6x_A 265 LRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYG 344 (584)
T ss_dssp HHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHH
T ss_pred HHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcccc
Confidence 75531 1244566777774 567999999999997762
Q ss_pred --------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHHHhhcCC--------CHHHHHH
Q 021051 235 --------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLKEFAKDP--------EPIVSQS 289 (318)
Q Consensus 235 --------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~~~--------~~~vr~~ 289 (318)
....+|.|++++.+. +..++..|+++|+++.. .++++.|+.++... ...+...
T Consensus 345 ~~~~~~v~~~~glp~Lv~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~ 422 (584)
T 3l6x_A 345 RYIRSALRQEKALSAIADLLTNE--HERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVIS 422 (584)
T ss_dssp HHHHHHHTSHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHH
Confidence 135689999999887 89999999999999852 35788999988764 3678899
Q ss_pred HHHHHHhchhh
Q 021051 290 CEVALSMLEYE 300 (318)
Q Consensus 290 a~~aL~~l~~~ 300 (318)
|+++|.++--.
T Consensus 423 a~~tL~NL~a~ 433 (584)
T 3l6x_A 423 ILNTINEVIAE 433 (584)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999988544
No 43
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.43 E-value=1.1e-11 Score=113.58 Aligned_cols=260 Identities=13% Similarity=0.121 Sum_probs=187.1
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------- 78 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 78 (318)
.++.|+++|.++++ .++..|+..|..+.. ...++.|+++|.++++.++..|+++|..+..
T Consensus 3 ~l~~lv~~L~s~~~--~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDE--KYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCT--HHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 57889999999987 899999999988642 3568999999999999999999999987653
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCC---------CcHHHHHhhhc-------cC--------CCHHH
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLE---------SNIPLLKNSLV-------SD--------PAQEV 130 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~---------~~~~~L~~~l~-------~d--------~~~~v 130 (318)
..++|.|+++|.. +.++.++..++.+|+++... ..+|.|.+++. .+ .++.+
T Consensus 81 ~i~~~G~i~~Lv~lL~~-~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRR-TGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHHTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHHcCCHHHHHHHHhh-CCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 3679999999983 46899999999999876421 35677888441 12 35678
Q ss_pred HHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC-CccHHHHHHHHcC------CCcChHHHHHHHHHHHhCC
Q 021051 131 RETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS-CSSVDMLREVLLG------EEKGMYERYAALFALRNHG 203 (318)
Q Consensus 131 r~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~L~~~l~~------~~~~~~~r~~a~~~L~~~~ 203 (318)
.+.++++|.++.. + +.....+ .. +..++.|..++.+ .+... ...++..|.++.
T Consensus 160 ~~~a~~aL~nLs~--~--~~~~~~i--------------~~~~g~i~~Lv~lL~~~~~~~~~~~~~--~e~a~~~L~nLs 219 (457)
T 1xm9_A 160 FFNATGCLRNLSS--A--DAGRQTM--------------RNYSGLIDSLMAYVQNCVAASRCDDKS--VENCMCVLHNLS 219 (457)
T ss_dssp HHHHHHHHHHHTT--S--HHHHHHH--------------TTSTTHHHHHHHHHHHHHHHTCTTCTT--HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcc--C--HHHHHHH--------------HHcCCCHHHHHHHHHhhccccCCchHH--HHHHHHHHHhcc
Confidence 8899999999871 0 1000000 01 1478888888864 23332 444544444321
Q ss_pred -------------------------------------------------------------ChhHHHHHHHHhC-CCCHH
Q 021051 204 -------------------------------------------------------------GDEAVSAIIDSLG-ATSAL 221 (318)
Q Consensus 204 -------------------------------------------------------------~~~~~~~l~~~l~-d~~~~ 221 (318)
+.+.++.+..++. ..++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~ 299 (457)
T 1xm9_A 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299 (457)
T ss_dssp TTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHH
T ss_pred cchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHH
Confidence 1234566667664 44689
Q ss_pred HHHHHHHHHhccC----------------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC---------hhhHHHHH
Q 021051 222 LKHEVAYVLGQLQ----------------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD---------DQSIGLLK 276 (318)
Q Consensus 222 vr~~a~~~L~~~~----------------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~---------~~~~~~L~ 276 (318)
++..|+.+|+.+. +..++|.|++++.+. +..++..|+++|.++.. ..+++.|.
T Consensus 300 ~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~--~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv 377 (457)
T 1xm9_A 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG--NSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVT 377 (457)
T ss_dssp HHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC--CHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHH
Confidence 9999999987763 235678999999987 89999999999998842 34688888
Q ss_pred HhhcCCC------HHHHHHHHHHHHhchhhh
Q 021051 277 EFAKDPE------PIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 277 ~~l~~~~------~~vr~~a~~aL~~l~~~~ 301 (318)
+++...+ +.+...++.+|.++-...
T Consensus 378 ~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~ 408 (457)
T 1xm9_A 378 RLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408 (457)
T ss_dssp HTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC
T ss_pred HhccCCCCCCCCcHHHHHHHHHHHHHHHhcC
Confidence 9887653 367788889998886543
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.41 E-value=8.4e-12 Score=102.01 Aligned_cols=89 Identities=20% Similarity=0.313 Sum_probs=59.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-------
Q 021051 208 VSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD------- 269 (318)
Q Consensus 208 ~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~------- 269 (318)
++.|.+++.++++.++..++.+|+.+.. ...++.|++++.+. ++.+|..|+.+|+++...
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~~~~~~~~ 175 (210)
T 4db6_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQA 175 (210)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 3444444444444444444444444431 34567777777765 677888888877777432
Q ss_pred ----hhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 270 ----QSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 270 ----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
++++.|.+++.++++.++..|.++|.++.
T Consensus 176 ~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 56888889888889999999999998774
No 45
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.39 E-value=2.4e-11 Score=99.26 Aligned_cols=164 Identities=22% Similarity=0.300 Sum_probs=99.7
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ 111 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------ 111 (318)
...+.|..++.++++.+|..|+++|+.+.. ...++.|++++. ++++.+|..|+.+|+++..
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 445555555555555555555555555432 135666777776 5667777777777776642
Q ss_pred -----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC
Q 021051 112 -----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE 186 (318)
Q Consensus 112 -----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ 186 (318)
.+.++.|.. +++++++.+|..++++|+++.. .+
T Consensus 90 ~~i~~~g~i~~L~~-lL~~~~~~v~~~a~~~L~~l~~-----------------------------------------~~ 127 (210)
T 4db6_A 90 QAVIDAGALPALVQ-LLSSPNEQILQEALWALSNIAS-----------------------------------------GG 127 (210)
T ss_dssp HHHHHTTCHHHHHH-HTTCSCHHHHHHHHHHHHHHTT-----------------------------------------SC
T ss_pred HHHHHCCCHHHHHH-HHcCCcHHHHHHHHHHHHHHHc-----------------------------------------CC
Confidence 236777777 5567778888888888887760 00
Q ss_pred cChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHH
Q 021051 187 KGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMV 255 (318)
Q Consensus 187 ~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~v 255 (318)
+. .... +. ....++.|.+++.++++.++..++.+|+.+.. ..+++.|++++.+. ++.+
T Consensus 128 ~~---~~~~---~~---~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v 196 (210)
T 4db6_A 128 NE---QIQA---VI---DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE--NEKI 196 (210)
T ss_dssp HH---HHHH---HH---HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHH
T ss_pred HH---HHHH---HH---HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHH
Confidence 00 0000 00 12355666666666666666666666666532 24678888888776 7888
Q ss_pred HHHHHHHHhccC
Q 021051 256 RHEAAEALGSIA 267 (318)
Q Consensus 256 r~~a~~aL~~~~ 267 (318)
|..|+.+|+.+.
T Consensus 197 ~~~a~~aL~~l~ 208 (210)
T 4db6_A 197 QKEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 888888888765
No 46
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=99.38 E-value=2.2e-11 Score=115.84 Aligned_cols=275 Identities=14% Similarity=0.132 Sum_probs=175.0
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCCC--C----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHHh
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKGP--G----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEAV 88 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~--~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~~ 88 (318)
...++.+.+++. ..|......+..+... + +++.|.+-|+|+++.+|..|+++||.++.+.. ++.+..+
T Consensus 73 ~~vik~~~s~~~--~~Krl~Yl~~~~~~~~~~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~~~~~~l~~~l~~~ 150 (618)
T 1w63_A 73 LECLKLIASQKF--TDKRIGYLGAMLLLDERQDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKL 150 (618)
T ss_dssp HHHHHHHHSSSH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCch--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 344455555553 6666666666555442 2 45566677789999999999999999997655 6778888
Q ss_pred hhcCCCCHHHHHHHHHHHHhcC--CC----CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhcc----Ccc----cccc
Q 021051 89 LNDFSLHPIVRHEAAEALGAIG--LE----SNIPLLKNSLVSDPAQEVRETCELALERIEKLKAS----GSD----GSSM 154 (318)
Q Consensus 89 l~~~~~~~~vR~~a~~~L~~~~--~~----~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~----~~~----~~~~ 154 (318)
+. ++++.||..|+.+++++. .+ ..++.+.. +..|+++.|+..|+.+|..+...... ... +...
T Consensus 151 L~--~~~~~VRk~A~~al~~l~~~~p~~v~~~~~~l~~-lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~ 227 (618)
T 1w63_A 151 LK--TSNSYLRKKAALCAVHVIRKVPELMEMFLPATKN-LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRI 227 (618)
T ss_dssp HH--SCCHHHHHHHHHHHHHHHHHCGGGGGGGGGGTTT-STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHH
T ss_pred Hc--CCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH-HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 88 899999999999998874 33 35566677 66899999999999999988611000 000 0000
Q ss_pred ccC-------CCC--c-ccCCCCC---------CC--C----CccHHHHHHHHcC----CCcChHHHHHHHHHHHhCCCh
Q 021051 155 TER-------SPF--M-SVDPAAP---------AS--S----CSSVDMLREVLLG----EEKGMYERYAALFALRNHGGD 205 (318)
Q Consensus 155 l~~-------~~~--~-~~~~~~~---------~~--~----~~~~~~L~~~l~~----~~~~~~~r~~a~~~L~~~~~~ 205 (318)
+.. ..+ . ..++... +. + +...+.|...+.. .+....+...+++++..+...
T Consensus 228 L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~ 307 (618)
T 1w63_A 228 LKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE 307 (618)
T ss_dssp HHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC
Confidence 000 000 0 0000000 00 0 1112222222211 111223567777777777543
Q ss_pred -----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC--c----chHHHHHHHHhccCCCHHHHHHHHHHHhccCChh----
Q 021051 206 -----EAVSAIIDSLGATSALLKHEVAYVLGQLQN--K----AASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ---- 270 (318)
Q Consensus 206 -----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~---- 270 (318)
.+...|..++.++++.+|..++.+|+.+.. + ...+.+...+.++ +..||..|++.|..+.+..
T Consensus 308 ~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~~~~~i~~~l~d~--d~~Ir~~alelL~~l~~~~nv~~ 385 (618)
T 1w63_A 308 SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRHRSTIVDCLKDL--DVSIKRRAMELSFALVNGNNIRG 385 (618)
T ss_dssp HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGGGHHHHHHGGGSS--CHHHHHHHHHHHHHHCCSSSTHH
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHccCC--ChhHHHHHHHHHHHHcccccHHH
Confidence 255667777777888888888888887753 2 2335666667765 7888888888888887653
Q ss_pred hHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 271 SIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 271 ~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
.++.|.+++.+.+.++|..++.+++.+...
T Consensus 386 iv~eL~~~l~~~d~e~r~~~v~~I~~la~k 415 (618)
T 1w63_A 386 MMKELLYFLDSCEPEFKADCASGIFLAAEK 415 (618)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 566666677777888888888888888664
No 47
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.38 E-value=2.9e-12 Score=116.60 Aligned_cols=269 Identities=16% Similarity=0.167 Sum_probs=188.7
Q ss_pred hhhHHHHHHhhcCCCC----------CHHHHHHHHHHHhccCC--CC---------hH----------HHHHHhccCCC-
Q 021051 15 PEMEKFLCDRLVDPTQ----------PISERFRALFSLRNLKG--PG---------PR----------DALIRATKDSS- 62 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~----------~~~~r~~A~~~l~~~~~--~~---------~~----------~~L~~~l~d~~- 62 (318)
...++.|+++|...+. +...|..|+++|.++-. ++ ++ +.+++++.+.+
T Consensus 69 ~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 148 (458)
T 3nmz_A 69 SGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148 (458)
T ss_dssp HTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhcc
Confidence 3467888999996431 24899999999988743 22 22 33444453321
Q ss_pred -H-----HHHH-------HHHHHHhccCCC----------CcHHHHHHhhhc---------CCCCHHHHHHHHHHHHhcC
Q 021051 63 -N-----LLAH-------EAAFALGQMQDA----------EAIPALEAVLND---------FSLHPIVRHEAAEALGAIG 110 (318)
Q Consensus 63 -~-----~vr~-------~a~~aL~~~~~~----------~~~~~L~~~l~~---------~~~~~~vR~~a~~~L~~~~ 110 (318)
. .++. .|+|+|+.+... .+++.|+.++.. .+.++.++..|+.+|.++.
T Consensus 149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa 228 (458)
T 3nmz_A 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT 228 (458)
T ss_dssp SSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence 1 1554 899999987642 578899999851 1234778999999998764
Q ss_pred C------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHH
Q 021051 111 L------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDML 178 (318)
Q Consensus 111 ~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L 178 (318)
. ...+|.|.. ++..+++.++..++++|.++. +...... ... +....+++.|
T Consensus 229 ~~~~~~k~~i~~~~GaIp~LV~-LL~s~~~~v~~~A~~aL~nLs-~~~~~~~-k~~--------------I~~~GaI~~L 291 (458)
T 3nmz_A 229 FGDVANKATLCSMKGCMRALVA-QLKSESEDLQQVIASVLRNLS-WRADVNS-KKT--------------LREVGSVKAL 291 (458)
T ss_dssp TTCHHHHHHHHHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHT-SSCCHHH-HHH--------------HHHTTHHHHH
T ss_pred CCCcccHHHHHHcCCcHHHHHH-HHhCCCHHHHHHHHHHHHHHh-cCCCHHH-HHH--------------HHHcCCHHHH
Confidence 2 124788999 667889999999999999987 2100000 000 0013478999
Q ss_pred HHHHcC-CCcChHHHHHHHHHHHhCC------------ChhHHHHHHHHhCCCCH----HHHHHHHHHHhccC-----C-
Q 021051 179 REVLLG-EEKGMYERYAALFALRNHG------------GDEAVSAIIDSLGATSA----LLKHEVAYVLGQLQ-----N- 235 (318)
Q Consensus 179 ~~~l~~-~~~~~~~r~~a~~~L~~~~------------~~~~~~~l~~~l~d~~~----~vr~~a~~~L~~~~-----~- 235 (318)
+++|.+ ++.. ++..|+.+|+++. ...+++.|.+++.+.+. .++..|+.+|..+. .
T Consensus 292 V~lLl~s~~~~--v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~ 369 (458)
T 3nmz_A 292 MECALEVKKES--TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNE 369 (458)
T ss_dssp HHHHTTCCSHH--HHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHhcCCCHH--HHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCH
Confidence 998644 4443 4777777776652 23677888888876543 48888888887653 2
Q ss_pred --------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHh
Q 021051 236 --------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSM 296 (318)
Q Consensus 236 --------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~ 296 (318)
..+++.|++++.+. +..++..|+++|+++. + .++++.|.+++.++++.++..|.+||.+
T Consensus 370 ~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~n 447 (458)
T 3nmz_A 370 DHRQILRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRN 447 (458)
T ss_dssp HHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 35689999999886 8899999999999985 2 2468999999999999999999999999
Q ss_pred chhhhcch
Q 021051 297 LEYEQLEK 304 (318)
Q Consensus 297 l~~~~~~~ 304 (318)
+-..++.+
T Consensus 448 L~~~~p~k 455 (458)
T 3nmz_A 448 LMANRPAK 455 (458)
T ss_dssp HHTCCSCC
T ss_pred HHcCCHhh
Confidence 98887655
No 48
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.34 E-value=2.3e-11 Score=111.57 Aligned_cols=230 Identities=13% Similarity=0.115 Sum_probs=166.7
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccCC-----------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQD-----------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------- 111 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------- 111 (318)
.++.|++.|+++++.++..|+++|..+.. ...+|.|+++|. ++++.++..|+.+|.++..
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--s~~~~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLR--SPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTT--SSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 57889999999999999999999988652 246899999999 7899999999999988742
Q ss_pred ----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc----
Q 021051 112 ----ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL---- 183 (318)
Q Consensus 112 ----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~---- 183 (318)
.+.+|.|.+++..++++.++..++++|.++.. . +.... .+.. .+++.|+.++.
T Consensus 81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~-~---~~~~~--------------~i~~-g~i~~Lv~ll~~~~s 141 (457)
T 1xm9_A 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSS-T---DELKE--------------ELIA-DALPVLADRVIIPFS 141 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHT-S---SSTHH--------------HHHH-HHHHHHHHHTTHHHH
T ss_pred HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhc-C---HHhHH--------------HHHh-ccHHHHHHHHhcccc
Confidence 45789999944337899999999999999981 1 10000 0012 47899999993
Q ss_pred ----CCC------cChHHHHHHHHHHHhCCC-----------hhHHHHHHHHhCC------CCHHHHHHHHHHHhccC--
Q 021051 184 ----GEE------KGMYERYAALFALRNHGG-----------DEAVSAIIDSLGA------TSALLKHEVAYVLGQLQ-- 234 (318)
Q Consensus 184 ----~~~------~~~~~r~~a~~~L~~~~~-----------~~~~~~l~~~l~d------~~~~vr~~a~~~L~~~~-- 234 (318)
++. ....+...|+++|.++.. +..++.|..++.+ .+..+...++..|..+.
T Consensus 142 ~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 142 GWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp TCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred ccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 221 122346689999988754 2567777777753 23334444443333221
Q ss_pred -----------------------------------------------------------CcchHHHHHHHHhccCCCHHH
Q 021051 235 -----------------------------------------------------------NKAASAALSDVLRNVNEHPMV 255 (318)
Q Consensus 235 -----------------------------------------------------------~~~~~~~L~~~l~~~~~~~~v 255 (318)
+..+++.|+.++.+.. ++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~ 300 (457)
T 1xm9_A 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK-KDAT 300 (457)
T ss_dssp HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHH
T ss_pred hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcC-CHHH
Confidence 2345778888887653 7999
Q ss_pred HHHHHHHHhccCC----------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 256 RHEAAEALGSIAD----------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 256 r~~a~~aL~~~~~----------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
+..|+++|+++.. .+.++.|.+++.+++..++..|+++|.++..+.
T Consensus 301 ~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~ 362 (457)
T 1xm9_A 301 LEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP 362 (457)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH
Confidence 9999999988841 245788999999999999999999999997653
No 49
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.32 E-value=5.2e-11 Score=105.15 Aligned_cols=238 Identities=16% Similarity=0.115 Sum_probs=139.9
Q ss_pred HHHHHHHHHhccCC----------CChHHHHHHhccC-----------CCHHHHHHHHHHHhccCCC------------C
Q 021051 34 ERFRALFSLRNLKG----------PGPRDALIRATKD-----------SSNLLAHEAAFALGQMQDA------------E 80 (318)
Q Consensus 34 ~r~~A~~~l~~~~~----------~~~~~~L~~~l~d-----------~~~~vr~~a~~aL~~~~~~------------~ 80 (318)
....|+++|+++.. ...++.|+.+|.. .++.+|..|+++|..+... .
T Consensus 48 ~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~G 127 (354)
T 3nmw_A 48 QICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG 127 (354)
T ss_dssp THHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCC
Confidence 34455555555532 2567777777731 2356788888888766421 2
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG 148 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~ 148 (318)
++|.|+.+|. ++++.++..|+.+|.++.. ...++.|.+++.+..++.++..++.+|.++.. +..
T Consensus 128 aIp~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~--~~~ 203 (354)
T 3nmw_A 128 CMRALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCT 203 (354)
T ss_dssp HHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT--TCH
T ss_pred cHHHHHHHHC--CCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc--cCh
Confidence 3777777777 6777777777777766532 13466666644455667777777777776651 000
Q ss_pred ccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC--hHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHH
Q 021051 149 SDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG--MYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEV 226 (318)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a 226 (318)
.....+. . ...+++.|.+++.+++.. ..++..|+.+|.++.. .+. .++..+..
T Consensus 204 ~nk~~i~------~--------~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~---------~~a-~~~~~~~~- 258 (354)
T 3nmw_A 204 ENKADIC------A--------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS---------LIA-TNEDHRQI- 258 (354)
T ss_dssp HHHHHHH------H--------STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHH---------HHT-TCHHHHHH-
T ss_pred hhhHHHH------H--------hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHh---------hcc-CCHHHHHH-
Confidence 0000000 0 123566666666544332 1124445444443311 000 11111110
Q ss_pred HHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 227 AYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 227 ~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
+.+..+++.|++++.+. +..++..|+.+|.++. + .++++.|.+++.++++.++..|.++|.
T Consensus 259 ------i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 259 ------LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp ------HHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred ------HHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 11244678888888765 6778888888888775 2 246899999999999999999999999
Q ss_pred hchhhhcchhhhcc
Q 021051 296 MLEYEQLEKSFEYL 309 (318)
Q Consensus 296 ~l~~~~~~~~~~~~ 309 (318)
++......+ ++-.
T Consensus 331 nL~~~~~~~-~~~~ 343 (354)
T 3nmw_A 331 NLMANRPAK-YKDA 343 (354)
T ss_dssp HHHTTCCGG-GC--
T ss_pred HHHcCCHHH-Hhhh
Confidence 999887766 5443
No 50
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.31 E-value=2.1e-10 Score=106.91 Aligned_cols=279 Identities=16% Similarity=0.090 Sum_probs=194.1
Q ss_pred hhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC------------CChHHHHHHhccC-CCHHHHHHHHHHHhccCCC---
Q 021051 16 EMEKFLCDRLVDPTQPISERFRALFSLRNLKG------------PGPRDALIRATKD-SSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 16 ~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~------------~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~--- 79 (318)
..++.|+++|.+++. .++..|+.+|..+.. ..+++.|+++|.+ .+..++..++.+|..+...
T Consensus 90 G~Ip~LV~LL~s~~~--~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~ 167 (584)
T 3l6x_A 90 KGIPVLVGLLDHPKK--EVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSI 167 (584)
T ss_dssp THHHHHHHGGGCSSH--HHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGG
T ss_pred CCcHHHHHHHCCCCH--HHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchh
Confidence 478999999999886 999999999988764 2579999999975 6788888887777655431
Q ss_pred ------CcHHHHHHhhh----------------cCCCCHHHHHHHHHHHHhcCCC------------CcHHHHHhhhc--
Q 021051 80 ------EAIPALEAVLN----------------DFSLHPIVRHEAAEALGAIGLE------------SNIPLLKNSLV-- 123 (318)
Q Consensus 80 ------~~~~~L~~~l~----------------~~~~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~-- 123 (318)
.+++.|++++. ...+++.|+..|..+|.++... ..++.|+..+.
T Consensus 168 k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~ 247 (584)
T 3l6x_A 168 KMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAE 247 (584)
T ss_dssp HHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHH
T ss_pred hHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 35788888761 0134689999999999887532 33556666332
Q ss_pred ---cCCCHHHHHHHHHHHHHHHhhhcc-C-ccccccccCC---C--CcccCC--CCCCCCCccHHHHHHHHcCCCcChHH
Q 021051 124 ---SDPAQEVRETCELALERIEKLKAS-G-SDGSSMTERS---P--FMSVDP--AAPASSCSSVDMLREVLLGEEKGMYE 191 (318)
Q Consensus 124 ---~d~~~~vr~~a~~aL~~~~~~~~~-~-~~~~~~l~~~---~--~~~~~~--~~~~~~~~~~~~L~~~l~~~~~~~~~ 191 (318)
.+++......++.+|.++. +... . .......... . .....+ ...+....+++.|+.++.+...+ .+
T Consensus 248 ~~~~~~~~~~~enav~aL~NLs-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~-~v 325 (584)
T 3l6x_A 248 IGQKDSDSKLVENCVCLLRNLS-YQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTP-AI 325 (584)
T ss_dssp HHTTCCSCHHHHHHHHHHHHHH-TTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCH-HH
T ss_pred hcccCccHHHHHHHHHHHHHhh-ccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCH-HH
Confidence 2356778899999999876 2110 0 0000000000 0 000000 01111335677888999654322 35
Q ss_pred HHHHHHHHHhCC---------------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC---------cchHHHHHHHHh
Q 021051 192 RYAALFALRNHG---------------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN---------KAASAALSDVLR 247 (318)
Q Consensus 192 r~~a~~~L~~~~---------------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~---------~~~~~~L~~~l~ 247 (318)
+..|+.+|.++. ....++.|.++|.+++..++..|+.+|+.+.. ..+++.|+++|.
T Consensus 326 ~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~ 405 (584)
T 3l6x_A 326 LEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLP 405 (584)
T ss_dssp HHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhc
Confidence 889999997772 13568889999999999999999999998743 347899999997
Q ss_pred ccCC------CHHHHHHHHHHHhcc--CC---------hhhHHHHHHhhcCC--CHHHHHHHHHHHHhch
Q 021051 248 NVNE------HPMVRHEAAEALGSI--AD---------DQSIGLLKEFAKDP--EPIVSQSCEVALSMLE 298 (318)
Q Consensus 248 ~~~~------~~~vr~~a~~aL~~~--~~---------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~l~ 298 (318)
+... +..+...|+.+|+++ ++ .++++.|..++.+. .+.+++.|.++|..+-
T Consensus 406 ~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 406 GGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp SSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred CCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 6521 367899999999876 32 35799999999875 8899999999999874
No 51
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=99.26 E-value=6.5e-13 Score=110.59 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=123.4
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHH
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVR 99 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR 99 (318)
.+..++.|+++ .||..++..+. .+.|..+++|+++.||..++..+ . .+.|..+++ |+++.||
T Consensus 78 ~l~~L~~D~~~--~VR~~aA~~L~-------~~~L~~ll~D~d~~VR~~aA~~l---~----~~~L~~L~~--D~d~~VR 139 (244)
T 1lrv_A 78 ALTPLIRDSDE--VVRRAVAYRLP-------REQLSALMFDEDREVRITVADRL---P----LEQLEQMAA--DRDYLVR 139 (244)
T ss_dssp GGGGGTTCSSH--HHHHHHHTTSC-------SGGGGGTTTCSCHHHHHHHHHHS---C----TGGGGGGTT--CSSHHHH
T ss_pred HHHHHccCcCH--HHHHHHHHHCC-------HHHHHHHHcCCCHHHHHHHHHhC---C----HHHHHHHHc--CCCHHHH
Confidence 35666777775 99999997643 24677888999999999999965 2 245666677 9999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHH
Q 021051 100 HEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLR 179 (318)
Q Consensus 100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~ 179 (318)
..++..+ . .+.+.. +.+|+++.||..++..+ + .+.+.
T Consensus 140 ~~aA~~l---~----~~~l~~-l~~D~d~~VR~~aa~~l---~--------------------------------~~ll~ 176 (244)
T 1lrv_A 140 AYVVQRI---P----PGRLFR-FMRDEDRQVRKLVAKRL---P--------------------------------EESLG 176 (244)
T ss_dssp HHHHHHS---C----GGGGGG-TTTCSCHHHHHHHHHHS---C--------------------------------GGGGG
T ss_pred HHHHHhc---C----HHHHHH-HHcCCCHHHHHHHHHcC---C--------------------------------HHHHH
Confidence 9999853 2 234445 77999999999988752 2 12344
Q ss_pred HHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHH
Q 021051 180 EVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 180 ~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a 259 (318)
.++.|+++. ||..++..+ ..+.|..++.|++|.||..++..++ .+.|..+ +|+ ++.||.++
T Consensus 177 ~ll~D~d~~--VR~aaa~~l-------~~~~L~~Ll~D~d~~VR~~aa~~l~-------~~~L~~L-~D~--~~~VR~aa 237 (244)
T 1lrv_A 177 LMTQDPEPE--VRRIVASRL-------RGDDLLELLHDPDWTVRLAAVEHAS-------LEALREL-DEP--DPEVRLAI 237 (244)
T ss_dssp GSTTCSSHH--HHHHHHHHC-------CGGGGGGGGGCSSHHHHHHHHHHSC-------HHHHHHC-CCC--CHHHHHHH
T ss_pred HHHcCCCHH--HHHHHHHhC-------CHHHHHHHHcCCCHHHHHHHHHcCC-------HHHHHHc-cCC--CHHHHHHH
Confidence 566777776 599998764 2356777889999999999999986 3556555 766 99999999
Q ss_pred HHHHhc
Q 021051 260 AEALGS 265 (318)
Q Consensus 260 ~~aL~~ 265 (318)
.+.||.
T Consensus 238 ~~~L~~ 243 (244)
T 1lrv_A 238 AGRLGI 243 (244)
T ss_dssp HCCC--
T ss_pred HHHhCC
Confidence 988763
No 52
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=99.26 E-value=3.1e-10 Score=103.61 Aligned_cols=243 Identities=15% Similarity=0.103 Sum_probs=164.6
Q ss_pred ChhhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCC--CHHHHHHHHHHHhccCC
Q 021051 14 SPEMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDS--SNLLAHEAAFALGQMQD 78 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 78 (318)
-++.++.|...+.++ ++ .+|..++.+++.+.. +...+.+.+.++++ ++.+|..|+++++.+-.
T Consensus 126 w~~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 367889999999887 64 899999999887542 23556677777887 79999999999986321
Q ss_pred C------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----------CC-CcHHHHHhhhccCCCHHHHHHHH
Q 021051 79 A------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIG----------LE-SNIPLLKNSLVSDPAQEVRETCE 135 (318)
Q Consensus 79 ~------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----------~~-~~~~~L~~~l~~d~~~~vr~~a~ 135 (318)
. ..++.+.+.+. ++++.+|..++++|+.+. -+ ..++.+.. ..++.++.||..++
T Consensus 204 ~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~a~ 280 (462)
T 1ibr_B 204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE-AMKSDIDEVALQGI 280 (462)
T ss_dssp TTHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH-HHHCSSHHHHHHHH
T ss_pred HHHHhhhhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCchHHHHHHH
Confidence 0 02444555555 789999999999997653 12 55666666 44788999999999
Q ss_pred HHHHHHHhhhccCccccccccCCCCcccCCC-CCCC------CCccHHHHHHHHcCC-----CcChHHHHHHHHHHHhCC
Q 021051 136 LALERIEKLKASGSDGSSMTERSPFMSVDPA-APAS------SCSSVDMLREVLLGE-----EKGMYERYAALFALRNHG 203 (318)
Q Consensus 136 ~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~------~~~~~~~L~~~l~~~-----~~~~~~r~~a~~~L~~~~ 203 (318)
..+..+.+...... .+.........+. .... -...++.++..+.+. +....+|..|..+|+.+.
T Consensus 281 ~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 281 EFWSNVCDEEMDLA----IEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHHHHHHHH----HHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence 99888762110000 0000000000000 0000 023456677777532 111235999988887753
Q ss_pred C-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 204 G-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 204 ~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
. +..++.+.+.+++++|.+|..++.++|.+.. +..+|.|...+.|+ ++.||.+|+++|++
T Consensus 357 ~~~~~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 357 TCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVGR 434 (462)
T ss_dssp HHTTTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCS--CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHH
Confidence 2 2455666678889999999999999998753 34788999999987 89999999999999
Q ss_pred cC
Q 021051 266 IA 267 (318)
Q Consensus 266 ~~ 267 (318)
+.
T Consensus 435 ~~ 436 (462)
T 1ibr_B 435 IC 436 (462)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 53
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.25 E-value=2.6e-10 Score=112.52 Aligned_cols=274 Identities=17% Similarity=0.105 Sum_probs=183.1
Q ss_pred ChhhHHHHHHhhcCC--CCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCC--CHHHHHHHHHHHhccCC
Q 021051 14 SPEMEKFLCDRLVDP--TQPISERFRALFSLRNLKG-----------PGPRDALIRATKDS--SNLLAHEAAFALGQMQD 78 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~--~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 78 (318)
-++.++.|...+.++ ++ .+|..++..++.+.. +..++.+.+.+.++ ++.+|..++++++.+-.
T Consensus 126 w~~ll~~l~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (876)
T 1qgr_A 126 WPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (876)
T ss_dssp CTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 356888899999887 64 899999998886642 23455566667766 68999999999986431
Q ss_pred C------------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------C-CcHHHHHhhhccCCCHHHHHHHH
Q 021051 79 A------------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------E-SNIPLLKNSLVSDPAQEVRETCE 135 (318)
Q Consensus 79 ~------------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~-~~~~~L~~~l~~d~~~~vr~~a~ 135 (318)
. ..++.+...+. ++++.+|..++.+|+.+.. . ..++.+.. ...+.++.||..+.
T Consensus 204 ~~~~~~~~~~~~~~il~~l~~~~~--~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~v~~~al 280 (876)
T 1qgr_A 204 FTKANFDKESERHFIMQVVCEATQ--CPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE-AMKSDIDEVALQGI 280 (876)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHH-HHTCSSHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HhcCCchHHHHHHH
Confidence 0 13555566665 7889999999998886531 1 45566666 44688899999999
Q ss_pred HHHHHHHhhhccCc-cccccc--cCCCCcccCCCCCCC---CCccHHHHHHHHcC-------CCcChHHHHHHHHHHHhC
Q 021051 136 LALERIEKLKASGS-DGSSMT--ERSPFMSVDPAAPAS---SCSSVDMLREVLLG-------EEKGMYERYAALFALRNH 202 (318)
Q Consensus 136 ~aL~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~~~~---~~~~~~~L~~~l~~-------~~~~~~~r~~a~~~L~~~ 202 (318)
..+..+........ ...+.. ...+.. +..... -+..++.++..+.. +++. +|..+..+++.+
T Consensus 281 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~--~r~~a~~~l~~l 355 (876)
T 1qgr_A 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEH---TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWN--PCKAAGVCLMLL 355 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCCSS---CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhhhhccccccCCCccc---hhHHHHHHHHHHHhHHHHHHhhcccccccccccH--HHHHHHHHHHHH
Confidence 88877762110000 000000 000000 000000 02345667777752 3344 599988888766
Q ss_pred CC-------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc-----------chHHHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 203 GG-------DEAVSAIIDSLGATSALLKHEVAYVLGQLQNK-----------AASAALSDVLRNVNEHPMVRHEAAEALG 264 (318)
Q Consensus 203 ~~-------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~~~~~~~~vr~~a~~aL~ 264 (318)
.. +..++.+...+.+++|.+|..++.++|.+... ..++.|+..+.|+ ++.||..|+++|+
T Consensus 356 ~~~~~~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~--~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 356 ATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP--SVVVRDTAAWTVG 433 (876)
T ss_dssp HHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred HHHCcHhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence 32 24455666777899999999999999988642 2467788888886 8999999999999
Q ss_pred ccCC------------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 265 SIAD------------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 265 ~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
++.. +..++.|...+.++ +.||..++++|..+...
T Consensus 434 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 434 RICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHH
Confidence 8752 13566777777775 89999999999988755
No 54
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.24 E-value=5.2e-10 Score=110.12 Aligned_cols=276 Identities=16% Similarity=0.135 Sum_probs=166.2
Q ss_pred hhhHHHHHHhhcCC-CCCHHHHHHHHHHHhccCC---CC----------hHHHHHHhccCC--CHHHHHHHHHHHhccC-
Q 021051 15 PEMEKFLCDRLVDP-TQPISERFRALFSLRNLKG---PG----------PRDALIRATKDS--SNLLAHEAAFALGQMQ- 77 (318)
Q Consensus 15 ~~~~~~L~~~L~~~-~~~~~~r~~A~~~l~~~~~---~~----------~~~~L~~~l~d~--~~~vr~~a~~aL~~~~- 77 (318)
++.++.|.+.+.++ ++ .+|..++..++.+.. ++ ..+.+...+.++ ++.+|..++.+++.+-
T Consensus 133 ~~ll~~L~~~l~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~ 210 (861)
T 2bpt_A 133 PELMKIMVDNTGAEQPE--NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI 210 (861)
T ss_dssp HHHHHHHHHHTSTTSCH--HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence 45677777777766 43 777777776654421 11 233334455665 6778888877776531
Q ss_pred --C---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC---C--------CcHHHHHhhhccCCCHHHHHHHH
Q 021051 78 --D---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL---E--------SNIPLLKNSLVSDPAQEVRETCE 135 (318)
Q Consensus 78 --~---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~---~--------~~~~~L~~~l~~d~~~~vr~~a~ 135 (318)
. ...++.|...+. ++++.+|..++.+|+.+.. . ..++.+.. ...|.++.+|..+.
T Consensus 211 ~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~vr~~a~ 287 (861)
T 2bpt_A 211 FIKNNMEREGERNYLMQVVCEATQ--AEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIA-TMKSPNDKVASMTV 287 (861)
T ss_dssp GCHHHHTSHHHHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHH-HTTCSSHHHHHHHH
T ss_pred HHHHHccChhHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCcHHHHHHHH
Confidence 0 013444455555 6777788777777765531 1 23333334 34577778888777
Q ss_pred HHHHHHHhhhccCccc-cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCC-----cChHHHHHHHHHHHhCCC-----
Q 021051 136 LALERIEKLKASGSDG-SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEE-----KGMYERYAALFALRNHGG----- 204 (318)
Q Consensus 136 ~aL~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~-----~~~~~r~~a~~~L~~~~~----- 204 (318)
..+..+.......... .+. ...+......... .-...++.++..+.+.+ ....+|..+..+|+.+..
T Consensus 288 ~~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~ 365 (861)
T 2bpt_A 288 EFWSTICEEEIDIAYELAQF-PQSPLQSYNFALS-SIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH 365 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCSCCCCCHHHH-HHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhhhhhhhhc-cCCchhhHHHHHH-HHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh
Confidence 7776665110000000 000 0000000000000 00234667777776422 223468888888876532
Q ss_pred --hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCc-----------chHHHHHHHHhccCCCHHHHHHHHHHHhccCC---
Q 021051 205 --DEAVSAIIDSLGATSALLKHEVAYVLGQLQNK-----------AASAALSDVLRNVNEHPMVRHEAAEALGSIAD--- 268 (318)
Q Consensus 205 --~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~-----------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~--- 268 (318)
+..++.+.+.+.+.+|.+|..++.++|.+... ..++.|...+.++ ++.||..++++++++..
T Consensus 366 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~--~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQ--SLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHhh
Confidence 24556666777899999999999999998642 2456667777776 89999999999998752
Q ss_pred ---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 269 ---------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 269 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
+..++.|.+.++++ +.||..++++|..+...
T Consensus 444 ~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 444 ESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp GGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHh
Confidence 23567777778776 89999999999987655
No 55
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.20 E-value=2.6e-10 Score=112.51 Aligned_cols=259 Identities=14% Similarity=0.075 Sum_probs=175.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCC--CHHHHHHHHHHHhccCC----------
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDS--SNLLAHEAAFALGQMQD---------- 78 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~---------- 78 (318)
..+.+.|.++++ .+ ..++..++.+ ..++.++.|.+.+.++ ++.+|..++.+|+.+..
T Consensus 93 ~~ll~~l~~~~~--~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 169 (876)
T 1qgr_A 93 NYVLHTLGTETY--RP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 169 (876)
T ss_dssp HHHHHHTTTCCS--SS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGG
T ss_pred HHHHHHhCCCcH--HH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhH
Confidence 347777877775 45 5555554432 2378999999999888 99999999999986542
Q ss_pred -CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------C------CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhh
Q 021051 79 -AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL------E------SNIPLLKNSLVSDPAQEVRETCELALERIEKLK 145 (318)
Q Consensus 79 -~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~ 145 (318)
...++.+...+.+.++++.+|..|+.+++.+-. . ..++.+.. +..++++.+|..+..++..+..
T Consensus 170 ~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~-~~~~~~~~vr~~a~~~l~~l~~-- 246 (876)
T 1qgr_A 170 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE-ATQCPDTRVRVAALQNLVKIMS-- 246 (876)
T ss_dssp HHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHH--
Confidence 123455666676211279999999999986421 0 13555666 5578899999999999998872
Q ss_pred ccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---------------------
Q 021051 146 ASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG--------------------- 204 (318)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~--------------------- 204 (318)
.....+...+ ....++.+...+.+.++. +|..++..+..+..
T Consensus 247 ~~~~~~~~~~---------------~~~l~~~~~~~~~~~~~~--v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (876)
T 1qgr_A 247 LYYQYMETYM---------------GPALFAITIEAMKSDIDE--VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEH 309 (876)
T ss_dssp HSGGGCHHHH---------------TTTHHHHHHHHHTCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSS
T ss_pred HhHHHHHHHH---------------HHHHHHHHHHHhcCCchH--HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccc
Confidence 1110000000 013577777777666555 48888766654421
Q ss_pred ----------hhHHHHHHHHhC-------CCCHHHHHHHHHHHhccCC---c----chHHHHHHHHhccCCCHHHHHHHH
Q 021051 205 ----------DEAVSAIIDSLG-------ATSALLKHEVAYVLGQLQN---K----AASAALSDVLRNVNEHPMVRHEAA 260 (318)
Q Consensus 205 ----------~~~~~~l~~~l~-------d~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~~~~~~~~vr~~a~ 260 (318)
...++.+.+.+. +.+|.+|..+..+|+.+.. . ..++.+...+.+. +|.+|.+|+
T Consensus 310 ~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l~~~--~~~~r~~a~ 387 (876)
T 1qgr_A 310 TSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNP--DWRYRDAAV 387 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHHH
T ss_pred hhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHccCC--ChHHHHHHH
Confidence 123444555553 3468899998888877542 2 3445555666665 899999999
Q ss_pred HHHhccCC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 261 EALGSIAD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 261 ~aL~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+++.+.. +..++.+...++|+++.||..|+++|+++.....
T Consensus 388 ~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~ 440 (876)
T 1qgr_A 388 MAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP 440 (876)
T ss_dssp HHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCc
Confidence 99999863 1257778888899999999999999999877644
No 56
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.19 E-value=7.1e-10 Score=109.18 Aligned_cols=258 Identities=13% Similarity=0.051 Sum_probs=178.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccC--------CCChHHHHHHhccCC-CHHHHHHHHHHHhccCC----C-----
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLK--------GPGPRDALIRATKDS-SNLLAHEAAFALGQMQD----A----- 79 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~--------~~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----~----- 79 (318)
...|++.|.++++ .+|..+..+++.+. .++.++.|.+.+.++ ++.+|..++..++.+.. .
T Consensus 97 k~~ll~~l~~~~~--~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~ 174 (861)
T 2bpt_A 97 KTNALTALVSIEP--RIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALV 174 (861)
T ss_dssp HHHHHHHHTCSSH--HHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTG
T ss_pred HHHHHHHHCCCch--HHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHH
Confidence 3457778888776 88999988887742 246788889999888 99999999998876532 1
Q ss_pred Cc----HHHHHHhhhcCCC--CHHHHHHHHHHHHhcC---C---------CCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 80 EA----IPALEAVLNDFSL--HPIVRHEAAEALGAIG---L---------ESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 80 ~~----~~~L~~~l~~~~~--~~~vR~~a~~~L~~~~---~---------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
.. ++.+...+. ++ ++.||..++++++.+- . ...++.|.. +..++++.+|..+..++..+
T Consensus 175 ~~~~~ll~~l~~~l~--~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~-~~~~~~~~~r~~a~~~l~~l 251 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQ--STETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCE-ATQAEDIEVQAAAFGCLCKI 251 (861)
T ss_dssp GGHHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHH-HHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHH
Confidence 12 344455566 55 8999999999998641 0 124555666 55788999999999999988
Q ss_pred HhhhccCccccccccCCCCcccCCCCCCCCC-ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----------------
Q 021051 142 EKLKASGSDGSSMTERSPFMSVDPAAPASSC-SSVDMLREVLLGEEKGMYERYAALFALRNHGG---------------- 204 (318)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---------------- 204 (318)
.. ... ..+...+ . ..++.+...+.+.+.. +|..++..+..+..
T Consensus 252 ~~-~~~-~~~~~~l----------------~~~l~~~~~~~~~~~~~~--vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~ 311 (861)
T 2bpt_A 252 MS-KYY-TFMKPYM----------------EQALYALTIATMKSPNDK--VASMTVEFWSTICEEEIDIAYELAQFPQSP 311 (861)
T ss_dssp HH-HHG-GGCHHHH----------------HHTHHHHHHHHTTCSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred HH-HHH-HHHHHHH----------------HHHHHHHHHHHHcCCcHH--HHHHHHHHHHHHHHHHHhhhhhhhhccCCc
Confidence 72 111 0000000 1 2455566666666554 58888887765422
Q ss_pred -----------hhHHHHHHHHhCC-------CCHHHHHHHHHHHhccCC---c----chHHHHHHHHhccCCCHHHHHHH
Q 021051 205 -----------DEAVSAIIDSLGA-------TSALLKHEVAYVLGQLQN---K----AASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 205 -----------~~~~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~---~----~~~~~L~~~l~~~~~~~~vr~~a 259 (318)
...++.+...+.+ .++.+|..+..+|+.+.. . ..++.+.+.+.+. +|.+|.+|
T Consensus 312 ~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a 389 (861)
T 2bpt_A 312 LQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITAD--NWRNREAA 389 (861)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCS--SHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence 2344556666653 347899999888877542 2 3445555566665 89999999
Q ss_pred HHHHhccCCh-----------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 260 AEALGSIADD-----------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 260 ~~aL~~~~~~-----------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+.+++.+... ..++.|.+.+.|+++.||..++++|+++.....
T Consensus 390 ~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~ 443 (861)
T 2bpt_A 390 VMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVA 443 (861)
T ss_dssp HHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhh
Confidence 9999998631 246777788889999999999999998876543
No 57
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=99.11 E-value=2.3e-09 Score=101.78 Aligned_cols=274 Identities=11% Similarity=0.097 Sum_probs=153.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CC----hHHHHHHhccCCCHHHHHHHHHHHhccCCCCc----HHHHHH
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG--PG----PRDALIRATKDSSNLLAHEAAFALGQMQDAEA----IPALEA 87 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~----~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~L~~ 87 (318)
....++.+.+++. ..|..+.-.+..+.. ++ ++..+.+-++|+++.+|..|+++|+.++.+.. .+.+.+
T Consensus 76 ~~~vvkl~~s~~~--~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~ 153 (621)
T 2vgl_A 76 HMEAVNLLSSNRY--TEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGEIPK 153 (621)
T ss_dssp HHHHHHGGGCSCH--HHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHH
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3444556666654 566655555555422 33 34444455566777777777777777665433 344445
Q ss_pred hh--hcCCCCHHHHHHHHHHHHhcC--------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccC------ccc
Q 021051 88 VL--NDFSLHPIVRHEAAEALGAIG--------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASG------SDG 151 (318)
Q Consensus 88 ~l--~~~~~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~------~~~ 151 (318)
++ . |.++.||..|+.++.++- .+...+.+.+ ++.|+++.|+.+++.++..+. ..+.. +..
T Consensus 154 ~l~~~--d~~~~VRK~A~~al~kl~~~~p~~~~~~~~~~~l~~-lL~d~d~~V~~~a~~~l~~i~-~~~~~~~~~~~~~~ 229 (621)
T 2vgl_A 154 ILVAG--DTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVH-LLNDQHLGVVTAATSLITTLA-QKNPEEFKTSVSLA 229 (621)
T ss_dssp HHHCS--SSCHHHHHHHHHHHHHHHHHCGGGCCCCSCHHHHHH-HTTCSCHHHHHHHHHHHHHHH-HHCHHHHTTHHHHH
T ss_pred HHhCC--CCCHHHHHHHHHHHHHHHHhChhhcCchhHHHHHHH-HhCCCCccHHHHHHHHHHHHH-HhChHHHHHHHHHH
Confidence 55 4 667777777776665542 1245666666 446677777777766666654 11100 000
Q ss_pred c----ccccCCCC-----c---ccCCC------------CCCCCCccHH-------HHHHHHcCC---------CcChHH
Q 021051 152 S----SMTERSPF-----M---SVDPA------------APASSCSSVD-------MLREVLLGE---------EKGMYE 191 (318)
Q Consensus 152 ~----~~l~~~~~-----~---~~~~~------------~~~~~~~~~~-------~L~~~l~~~---------~~~~~~ 191 (318)
. ..+....+ . ..+|. ....+++... .++..+.+. +....+
T Consensus 230 ~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV 309 (621)
T 2vgl_A 230 VSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAV 309 (621)
T ss_dssp HHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence 0 00000000 0 00000 0000111111 222221111 111235
Q ss_pred HHHHHHHHHhCCCh-----hHHHHHHHHhCCCCHHHHHHHHHHHhccCCc--------chHHHHHHHHh-ccCCCHHHHH
Q 021051 192 RYAALFALRNHGGD-----EAVSAIIDSLGATSALLKHEVAYVLGQLQNK--------AASAALSDVLR-NVNEHPMVRH 257 (318)
Q Consensus 192 r~~a~~~L~~~~~~-----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~--------~~~~~L~~~l~-~~~~~~~vr~ 257 (318)
...++.++-.+... .++..|..++.++++++|..++..|..+... ...+.++..+. ++ |..||.
T Consensus 310 l~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~--d~~Ir~ 387 (621)
T 2vgl_A 310 LFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKTHIETVINALKTER--DVSVRQ 387 (621)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCC--CHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCC--CHhHHH
Confidence 66777777666542 3556677778888999999999998887532 22355566666 65 789999
Q ss_pred HHHHHHhccCChhh----HHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 258 EAAEALGSIADDQS----IGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 258 ~a~~aL~~~~~~~~----~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
.+++.|..+.++.. +..|.+++.+.+..+|..++.+++.+..
T Consensus 388 ~aL~lL~~l~~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 388 RAVDLLYAMCDRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAE 433 (621)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999987653 4445556667788889999988888753
No 58
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.06 E-value=1.5e-09 Score=98.88 Aligned_cols=211 Identities=18% Similarity=0.148 Sum_probs=157.2
Q ss_pred HHHHHHhccCC----------CChHHHHHHhcc-----------CCCHHHHHHHHHHHhccCC------------CCcHH
Q 021051 37 RALFSLRNLKG----------PGPRDALIRATK-----------DSSNLLAHEAAFALGQMQD------------AEAIP 83 (318)
Q Consensus 37 ~A~~~l~~~~~----------~~~~~~L~~~l~-----------d~~~~vr~~a~~aL~~~~~------------~~~~~ 83 (318)
.|+++|+++.. ..+++.|..+|. +.++.++..|+++|..+.. ..++|
T Consensus 167 qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp 246 (458)
T 3nmz_A 167 PAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMR 246 (458)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHH
Confidence 88999988764 367888888883 1346789999999977542 13489
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCC------------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051 84 ALEAVLNDFSLHPIVRHEAAEALGAIGL------------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDG 151 (318)
Q Consensus 84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~------------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 151 (318)
.|+.+|. ++++.++..|+.+|+++.. ...++.|.+++....++.++..++.+|.++.. +.....
T Consensus 247 ~LV~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~--~~~~nk 322 (458)
T 3nmz_A 247 ALVAQLK--SESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSA--HCTENK 322 (458)
T ss_dssp HHHHGGG--CSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHH--HCHHHH
T ss_pred HHHHHHh--CCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHcc--CCHHHH
Confidence 9999999 8999999999999988753 23578888855677789999999999988871 010000
Q ss_pred cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcC--hHHHHHHHHHHHhCC-----C---------hhHHHHHHHHh
Q 021051 152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKG--MYERYAALFALRNHG-----G---------DEAVSAIIDSL 215 (318)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~--~~~r~~a~~~L~~~~-----~---------~~~~~~l~~~l 215 (318)
..+. . ...+++.|..+|.+++.. ..++..|+.+|.++. + ...++.|.++|
T Consensus 323 ~~I~------~--------~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL 388 (458)
T 3nmz_A 323 ADIC------A--------VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL 388 (458)
T ss_dssp HHHH------H--------STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHS
T ss_pred HHHH------H--------hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHH
Confidence 0000 0 134799999999876553 124777777776653 2 25678899999
Q ss_pred CCCCHHHHHHHHHHHhccC--C---------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 216 GATSALLKHEVAYVLGQLQ--N---------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 216 ~d~~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
.+.+..++..|+.+|+.+. + ..+++.|++++.+. ++.+|..|+.+|.++.
T Consensus 389 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~--~~~v~~~Aa~AL~nL~ 449 (458)
T 3nmz_A 389 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLM 449 (458)
T ss_dssp SCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS--SHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 9999999999999999875 2 34689999999876 8999999999998874
No 59
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.04 E-value=1.6e-09 Score=110.96 Aligned_cols=279 Identities=15% Similarity=0.093 Sum_probs=173.7
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhcc--------CCCChHHHHHHhccCCCHHHHHHHHHHHhccC----C---
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNL--------KGPGPRDALIRATKDSSNLLAHEAAFALGQMQ----D--- 78 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~--- 78 (318)
.+..++.|.+.|.|++ |.+|..|+..++.+ .. ..++.|...+.|+++.+|..++.+|+.+. .
T Consensus 46 ~~~il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~~~~~-~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~ 122 (1230)
T 1u6g_C 46 ERKVVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKEYQVE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 122 (1230)
T ss_dssp HHHHHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCHHHHH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence 3567777888888665 48888888887653 25 57778888888888888888888887643 1
Q ss_pred ---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC----C------CCcHHHHHhhhccCCCHHHHHHHHHHHH
Q 021051 79 ---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG----L------ESNIPLLKNSLVSDPAQEVRETCELALE 139 (318)
Q Consensus 79 ---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~----~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~ 139 (318)
+..+|.|...+.+ ++++.+|..|+.+++.+. . +..++.|.. .+.++++.||..++.+++
T Consensus 123 ~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~-~L~~~~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 123 GSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLP-QLTSPRLAVRKRTIIALG 200 (1230)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGG-GGGCSSHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHH
Confidence 1335556666652 367888888888887653 1 123455666 446778888888888888
Q ss_pred HHHhhhccC--cc----ccccccCC-CCcccC------------CCCCCC--CCccHHHHHHHHcCCCcChHHHHHHHHH
Q 021051 140 RIEKLKASG--SD----GSSMTERS-PFMSVD------------PAAPAS--SCSSVDMLREVLLGEEKGMYERYAALFA 198 (318)
Q Consensus 140 ~~~~~~~~~--~~----~~~~l~~~-~~~~~~------------~~~~~~--~~~~~~~L~~~l~~~~~~~~~r~~a~~~ 198 (318)
.+....... .. +...+... ...... ....+. -...++.++..+.++++.+ |..++.+
T Consensus 201 ~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~v--R~~a~~~ 278 (1230)
T 1u6g_C 201 HLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL--REYCIQA 278 (1230)
T ss_dssp HHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT--HHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHH--HHHHHHH
Confidence 776211100 00 00111100 000000 000000 2467899999998887775 9888888
Q ss_pred HHhCC---Ch-------hHHHHHHHHhC-------------------------------------CCCHHHHHHHHHHHh
Q 021051 199 LRNHG---GD-------EAVSAIIDSLG-------------------------------------ATSALLKHEVAYVLG 231 (318)
Q Consensus 199 L~~~~---~~-------~~~~~l~~~l~-------------------------------------d~~~~vr~~a~~~L~ 231 (318)
++.+. .. ..++.+.+.+. +..|.+|..|+.+++
T Consensus 279 l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~ 358 (1230)
T 1u6g_C 279 FESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLD 358 (1230)
T ss_dssp HHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHH
Confidence 77642 11 12233322221 113567888988888
Q ss_pred ccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC----C-------------------------hhhH
Q 021051 232 QLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA----D-------------------------DQSI 272 (318)
Q Consensus 232 ~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~-------------------------~~~~ 272 (318)
.+.. +..++.|...+.+. ++.||.+++.+++.+- . +..+
T Consensus 359 ~l~~~~~~~~~~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll 436 (1230)
T 1u6g_C 359 AVVSTRHEMLPEFYKTVSPALISRFKER--EENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIV 436 (1230)
T ss_dssp HHHTTCCTTHHHHHTTTHHHHHSTTSCS--SSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHH
T ss_pred HHHHhchhHHHHHHHHHHHHHHHHcCCC--chHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHH
Confidence 6532 23456666666665 7899999998876541 1 2345
Q ss_pred HHHHHhhcCCCHHHHHHHHHHHHhchhhh
Q 021051 273 GLLKEFAKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 273 ~~L~~~l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
+.+.+.++++++.+|..++.+|+.+-...
T Consensus 437 ~~l~~~l~~~~~~vr~~~~~~L~~l~~~~ 465 (1230)
T 1u6g_C 437 KALHKQMKEKSVKTRQCCFNMLTELVNVL 465 (1230)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHHHHc
Confidence 56666689999999999999999876653
No 60
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.00 E-value=1.2e-08 Score=87.71 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=40.8
Q ss_pred CcHHHHHH-hhhcCCCCHHHHHHHHHHHHhcCC-----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 EAIPALEA-VLNDFSLHPIVRHEAAEALGAIGL-----------ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ~~~~~L~~-~l~~~~~~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..++.|+. +|. ++++.+|..|+++|+++.. .+.++.|..++..++++.+|..++++|+.+.
T Consensus 81 G~l~~Lv~~lL~--s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~ 153 (296)
T 1xqr_A 81 SGMHLLVGRYLE--AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV 153 (296)
T ss_dssp THHHHHHHTTTT--CSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 34566666 666 5666666666666665521 2467788885544667888888888888775
No 61
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.98 E-value=3.1e-09 Score=108.78 Aligned_cols=200 Identities=14% Similarity=0.165 Sum_probs=127.3
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcCC-------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccc
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAIGL-------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMT 155 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l 155 (318)
+.|.+.+. ++++.+|..|+.+|+.+.. +..++.|.. ...|+++.+|..+..+|+.+.........
T Consensus 51 ~~Ll~~L~--d~~~~vR~~A~~~L~~l~~~~~~~~~~~i~~~Ll~-~l~d~~~~vR~~a~~~L~~i~~~l~~~~~----- 122 (1230)
T 1u6g_C 51 KMILKLLE--DKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPASS----- 122 (1230)
T ss_dssp HHHHHHTT--CSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-HTTCSSSHHHHHHHHHHHHHHHHCC---------
T ss_pred HHHHHHhc--CCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHhCCCccc-----
Confidence 33444444 4444455444444444321 123444555 33566777777777777776521100000
Q ss_pred cCCCCcccCCCCCCCCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhCC----C------hhHHHHHHHHhCCCCHHHHH
Q 021051 156 ERSPFMSVDPAAPASSCSSVDMLREVLLG-EEKGMYERYAALFALRNHG----G------DEAVSAIIDSLGATSALLKH 224 (318)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~~----~------~~~~~~l~~~l~d~~~~vr~ 224 (318)
...+... .-++.++.|+..+.+ +++ .+|..|+.+++.+. . +..++.+...+.++++.+|.
T Consensus 123 -~~~~~~~------~~~~llp~L~~~l~~~~~~--~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~ 193 (1230)
T 1u6g_C 123 -GSALAAN------VCKKITGRLTSAIAKQEDV--SVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRK 193 (1230)
T ss_dssp --CCTHHH------HHHHHHHHHHHHHSCCSCH--HHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHH
T ss_pred -ccchHHH------HHHHHHHHHHHHHcCCCch--HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 0000000 013467888888874 444 46999999988753 2 35667777778899999999
Q ss_pred HHHHHHhccCC-------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCC----------hhhHHHHHHhhcCCCHHHH
Q 021051 225 EVAYVLGQLQN-------KAASAALSDVLRNVNEHPMVRHEAAEALGSIAD----------DQSIGLLKEFAKDPEPIVS 287 (318)
Q Consensus 225 ~a~~~L~~~~~-------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr 287 (318)
.|+.+++.+.. +..++.|++.+.+.+ ++.+|..++++++.+.. +..++.+...+.++++.||
T Consensus 194 ~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~-~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR 272 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNIVFVDLIEHLLSELSKND-SMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELR 272 (1230)
T ss_dssp HHHHHHHHHTTTC----CTTHHHHHHHHHHHTC-SSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 99999998753 245888888887652 45788888998887642 4578999999999899999
Q ss_pred HHHHHHHHhchhh
Q 021051 288 QSCEVALSMLEYE 300 (318)
Q Consensus 288 ~~a~~aL~~l~~~ 300 (318)
..+..+++.+-..
T Consensus 273 ~~a~~~l~~l~~~ 285 (1230)
T 1u6g_C 273 EYCIQAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 9999998876553
No 62
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.98 E-value=4.3e-09 Score=88.00 Aligned_cols=189 Identities=19% Similarity=0.188 Sum_probs=125.9
Q ss_pred HHHHHhhhcCCCCHHHHHHHHHHHHhcC-------C---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcccc
Q 021051 83 PALEAVLNDFSLHPIVRHEAAEALGAIG-------L---ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGS 152 (318)
Q Consensus 83 ~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~ 152 (318)
+.+.+.+. +++|..|..|+..|..+- . .+..+.|.+.+.+|++..||..++.+++.+...... .
T Consensus 18 ~~l~~~l~--s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~--~-- 91 (242)
T 2qk2_A 18 KDFYDKLE--EKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK--R-- 91 (242)
T ss_dssp TTHHHHHT--CSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG--G--
T ss_pred HHHHhhhc--cCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh--h--
Confidence 34666777 788888888887776541 1 123556667332599999999999999988721100 0
Q ss_pred ccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC----hhHHHHHHHHhCCCCHHHHHHHHH
Q 021051 153 SMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG----DEAVSAIIDSLGATSALLKHEVAY 228 (318)
Q Consensus 153 ~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~----~~~~~~l~~~l~d~~~~vr~~a~~ 228 (318)
+... .+..++.|++.+.|++.. +|..+..+|..+.. ...++.+...+++.++.+|..++.
T Consensus 92 -------~~~~-------~~~ilp~ll~~l~d~~~~--vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~ 155 (242)
T 2qk2_A 92 -------FSNY-------ASACVPSLLEKFKEKKPN--VVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETAL 155 (242)
T ss_dssp -------GHHH-------HHHHHHHHHHGGGCCCHH--HHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred -------HHHH-------HHHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 0000 023678888988887765 49999888876633 466788888889999999999999
Q ss_pred HHhcc-CC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 229 VLGQL-QN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 229 ~L~~~-~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
.|+.+ .. +..+|.|...+.|. ++.||.+|..+++.+...---..+..++.+-++.-+......+.
T Consensus 156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~ 232 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEP--DPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQE 232 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99884 21 14678888888887 89999999999998753211223444554444444444433333
No 63
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.98 E-value=2.1e-08 Score=87.80 Aligned_cols=245 Identities=13% Similarity=0.078 Sum_probs=133.6
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhccCC--CC---hHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHH----HHhhh
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRNLKG--PG---PRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPAL----EAVLN 90 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~---~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L----~~~l~ 90 (318)
.+++++.+++. ..|......+..+.. ++ +...|.+-++++++.+|..|+++|+.+..+..++.+ .+.+.
T Consensus 72 ~v~kl~~s~d~--~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 72 AMTKLFQSNDP--TLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDSYRGPAVRALCQITDSTMLQAIERYMKQAIV 149 (355)
T ss_dssp HHHGGGGCCCH--HHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 34556777764 677666666655543 23 355566666788999999999999999887665555 44444
Q ss_pred cCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051 91 DFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD 164 (318)
Q Consensus 91 ~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (318)
|.+|.||..|+-+..++-. ...++.+.+ +..|.++.|...|...|..+.. +
T Consensus 150 --d~~pyVRk~A~l~~~kL~~~~pe~v~~~~~~l~~-ll~d~n~~V~~~Al~lL~ei~~--~------------------ 206 (355)
T 3tjz_B 150 --DKVPSVSSSALVSSLHLLKCSFDVVKRWVNEAQE-AASSDNIMVQYHALGLLYHVRK--N------------------ 206 (355)
T ss_dssp --CSSHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHH-HTTCSSHHHHHHHHHHHHHHHT--T------------------
T ss_pred --CCCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-HhcCCCccHHHHHHHHHHHHHh--h------------------
Confidence 8899999999988887642 235666777 5688899998888888887761 0
Q ss_pred CCCCCCCCccHHHHHHHHcCCCc-ChHHHHHHHHHHHhCCCh-------hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-
Q 021051 165 PAAPASSCSSVDMLREVLLGEEK-GMYERYAALFALRNHGGD-------EAVSAIIDSLGATSALLKHEVAYVLGQLQN- 235 (318)
Q Consensus 165 ~~~~~~~~~~~~~L~~~l~~~~~-~~~~r~~a~~~L~~~~~~-------~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~- 235 (318)
++.++..|+..+..... .-+.....+..++.++.. ..++.+...+++.++.|..+|+.++-.+..
T Consensus 207 ------d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 207 ------DRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ------CHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCSSHHHHHHHHHHHTC----
T ss_pred ------chHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC
Confidence 01245556655544311 122344445555555432 233455566778889999999999887764
Q ss_pred -----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhH----HHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 236 -----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSI----GLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 236 -----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~----~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
..+...|..++.++ ++++|+.|++.|..+. .|+++ ..+..++.|++..++..|+-.|-+-
T Consensus 281 ~~~~~~~a~~~L~~fLss~--d~niryvaLr~L~~l~~~~P~~v~~~n~~ie~li~d~n~sI~t~Aittllkt 351 (355)
T 3tjz_B 281 SAKELAPAVSVLQLFCSSP--KAALRYAAVRTLNKVAMKHPSAVTACNLDLENLVTDANRSIATLAITTLLKT 351 (355)
T ss_dssp -------CCCTHHHHHHSS--SSSSHHHHHHCC----------------------------------------
T ss_pred CHHHHHHHHHHHHHHHcCC--CchHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence 12345666777766 7889999999888874 44443 3466778888887877777666544
No 64
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=98.96 E-value=7.9e-08 Score=91.27 Aligned_cols=279 Identities=13% Similarity=0.090 Sum_probs=175.6
Q ss_pred hhHHHHHHhhc-CCCCCHHHHHHHHHHHhc---cCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCCC------cHH
Q 021051 16 EMEKFLCDRLV-DPTQPISERFRALFSLRN---LKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDAE------AIP 83 (318)
Q Consensus 16 ~~~~~L~~~L~-~~~~~~~~r~~A~~~l~~---~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~------~~~ 83 (318)
.-+..+...++ ++..+...|..++.-+-- .|. ......+++++.+++...|..+--.+..+.... ++.
T Consensus 35 ~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN 114 (621)
T 2vgl_A 35 KELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRLINN 114 (621)
T ss_dssp HHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHHHHH
Confidence 35677888887 333233556555544321 132 357788888999999999999988888877642 345
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHhcCCCCc----HHHHHhhhc--cCCCHHHHHHHHHHHHHHHhhhccCc-----c--
Q 021051 84 ALEAVLNDFSLHPIVRHEAAEALGAIGLESN----IPLLKNSLV--SDPAQEVRETCELALERIEKLKASGS-----D-- 150 (318)
Q Consensus 84 ~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~----~~~L~~~l~--~d~~~~vr~~a~~aL~~~~~~~~~~~-----~-- 150 (318)
.|.+-+. ++++.+|..|+++|+++..++. .+.+.+ +. .|++|.||+.|+.++.++-. ...+ .
T Consensus 115 ~l~kDl~--~~n~~ir~lALr~L~~i~~~e~~~~l~~~v~~-~l~~~d~~~~VRK~A~~al~kl~~--~~p~~~~~~~~~ 189 (621)
T 2vgl_A 115 AIKNDLA--SRNPTFMGLALHCIANVGSREMAEAFAGEIPK-ILVAGDTMDSVKQSAALCLLRLYR--TSPDLVPMGDWT 189 (621)
T ss_dssp HHHHHHH--SCCHHHHHHHHHHHHHHCCHHHHHHHTTHHHH-HHHCSSSCHHHHHHHHHHHHHHHH--HCGGGCCCCSCH
T ss_pred HHHHhcC--CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHH-HHhCCCCCHHHHHHHHHHHHHHHH--hChhhcCchhHH
Confidence 5666667 8999999999999999998764 445566 45 79999999999999998862 1111 1
Q ss_pred --ccccccCCCCcccCCCCC-C---C--CC----ccHHHHH----HHHcCCCc-----------ChHHHHHHHHHHHhCC
Q 021051 151 --GSSMTERSPFMSVDPAAP-A---S--SC----SSVDMLR----EVLLGEEK-----------GMYERYAALFALRNHG 203 (318)
Q Consensus 151 --~~~~l~~~~~~~~~~~~~-~---~--~~----~~~~~L~----~~l~~~~~-----------~~~~r~~a~~~L~~~~ 203 (318)
+..++.+.+......+.. + . .+ ..++.++ .++..++. .-+.+...++.++.++
T Consensus 190 ~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~ 269 (621)
T 2vgl_A 190 SRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYP 269 (621)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSS
T ss_pred HHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhC
Confidence 111221111100000000 0 0 00 1233333 33322211 2356888899998886
Q ss_pred C---hhHHH----HHHHHhC---C-C--------C--HHHHHHHHHHHhccCCc-----chHHHHHHHHhccCCCHHHHH
Q 021051 204 G---DEAVS----AIIDSLG---A-T--------S--ALLKHEVAYVLGQLQNK-----AASAALSDVLRNVNEHPMVRH 257 (318)
Q Consensus 204 ~---~~~~~----~l~~~l~---d-~--------~--~~vr~~a~~~L~~~~~~-----~~~~~L~~~l~~~~~~~~vr~ 257 (318)
. ++... .+...++ + + + ..|..+++.++-.+... .+...|..++.+. ++++|+
T Consensus 270 ~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~--~~niry 347 (621)
T 2vgl_A 270 PPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHR--ETNLRY 347 (621)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCS--CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCC--CcchHH
Confidence 4 22222 1222221 1 1 2 37778888888777642 3567777788765 899999
Q ss_pred HHHHHHhccCCh--------hhHHHHHHhhc-CCCHHHHHHHHHHHHhchhhh
Q 021051 258 EAAEALGSIADD--------QSIGLLKEFAK-DPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 258 ~a~~aL~~~~~~--------~~~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~ 301 (318)
.++.+|..+... .....+...++ +++..||..+...|..+....
T Consensus 348 ~aL~~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~ 400 (621)
T 2vgl_A 348 LALESMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDRS 400 (621)
T ss_dssp HHHHHHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh
Confidence 999999998532 23455666678 899999999999988776543
No 65
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.92 E-value=2e-08 Score=88.59 Aligned_cols=202 Identities=18% Similarity=0.170 Sum_probs=137.2
Q ss_pred hhhHHHHHHhhcCC---------CCCHHHHHHHHHHHhccCCC------------ChHHHHHHhccCCCHHHHHHHHHHH
Q 021051 15 PEMEKFLCDRLVDP---------TQPISERFRALFSLRNLKGP------------GPRDALIRATKDSSNLLAHEAAFAL 73 (318)
Q Consensus 15 ~~~~~~L~~~L~~~---------~~~~~~r~~A~~~l~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL 73 (318)
...++.|..+|..+ ..+..++..|+++|..+... .+++.|+++|.++++.++..|+++|
T Consensus 72 ~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL 151 (354)
T 3nmw_A 72 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL 151 (354)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34677788888421 11136899999999887431 2488899999999999999999999
Q ss_pred hccCC------------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC------------CCCcHHHHHhhhccCCCH-
Q 021051 74 GQMQD------------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG------------LESNIPLLKNSLVSDPAQ- 128 (318)
Q Consensus 74 ~~~~~------------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~------------~~~~~~~L~~~l~~d~~~- 128 (318)
+.+.. ..+++.|+++|.. ..++.++..|+.+|.++. ....++.|.+ ++.++++
T Consensus 152 ~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~-~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~-lL~~~~~~ 229 (354)
T 3nmw_A 152 RNLSWRADVNSKKTLREVGSVKALMECALE-VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVG-TLTYRSQT 229 (354)
T ss_dssp HHHHTTCCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHH-HTTCCCSS
T ss_pred HHHhccCCHHHHHHHHHCCCHHHHHHHHhc-CCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHH-HhccCCCc
Confidence 77643 2468999997541 578889988777776543 2457888888 4444443
Q ss_pred ---HHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh
Q 021051 129 ---EVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD 205 (318)
Q Consensus 129 ---~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~ 205 (318)
.++..+..+|.++... +. .++.. |.. + .+.
T Consensus 230 ~~~~v~~~A~~aL~nLs~~-------------------------------------~a-~~~~~--~~~----i---~~~ 262 (354)
T 3nmw_A 230 NTLAIIESGGGILRNVSSL-------------------------------------IA-TNEDH--RQI----L---REN 262 (354)
T ss_dssp SCCHHHHHHHHHHHHHHHH-------------------------------------HT-TCHHH--HHH----H---HTT
T ss_pred ccHHHHHHHHHHHHHHHhh-------------------------------------cc-CCHHH--HHH----H---HHc
Confidence 5888888888877610 00 00100 111 1 123
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
..++.|.++|.+.+..++..|+.+|+.+.. ..+++.|++++.+. ++.+|..|+.+|.++.
T Consensus 263 g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~--~~~i~~~A~~aL~nL~ 333 (354)
T 3nmw_A 263 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK--HKMIAMGSAAALRNLM 333 (354)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS--SHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHH
Confidence 356666666666666677777777666541 34689999999876 8899999999998874
No 66
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.9e-07 Score=87.59 Aligned_cols=202 Identities=16% Similarity=0.127 Sum_probs=142.2
Q ss_pred CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHH---HHHHHHHHHHHHHhh
Q 021051 78 DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQE---VRETCELALERIEKL 144 (318)
Q Consensus 78 ~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~---vr~~a~~aL~~~~~~ 144 (318)
...+++.|+.++. ++++.+|..|+++|.++.. .+.++.|..++ .+.... +|..|+.+|.++.
T Consensus 455 eaGvIp~Lv~Ll~--S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL-~s~~~~~~~~k~~AA~ALArLl-- 529 (778)
T 3opb_A 455 RTELISFLKREMH--NLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYL-ANKQDIGEPIRILGCRALTRML-- 529 (778)
T ss_dssp TTTHHHHHHHHGG--GSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHT-TCC---CCHHHHHHHHHHHHHH--
T ss_pred HCcCHHHHHHHHc--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-hcCCCcchHHHHHHHHHHHHHH--
Confidence 3467899999998 7899999999999988742 35678888844 444333 8999999999986
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcC-CCc-----------ChHHHHHHHHHHHhCCC--------
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLG-EEK-----------GMYERYAALFALRNHGG-------- 204 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~-~~~-----------~~~~r~~a~~~L~~~~~-------- 204 (318)
-...+.. ..+.. ..-++++.|+.+|.. +.. +...+..|+.+|+++..
T Consensus 530 is~np~~-----------~f~~~--~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~ 596 (778)
T 3opb_A 530 IFTNPGL-----------IFKKY--SALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEE 596 (778)
T ss_dssp HTSCHHH-----------HSSSS--CSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred hcCCHHH-----------HcCCC--ccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchH
Confidence 1111100 00000 012579999999973 221 11236778888776621
Q ss_pred --------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-Ccc----------------hHHHHHHHHhccCCCHHHHHHH
Q 021051 205 --------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-NKA----------------ASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 205 --------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-~~~----------------~~~~L~~~l~~~~~~~~vr~~a 259 (318)
..+++.|.+++.+.+..+|.+|+.++..+. .+. -++.|+.++... +..+|.+|
T Consensus 597 ~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~--D~~~r~AA 674 (778)
T 3opb_A 597 VCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLS--DVESQRAV 674 (778)
T ss_dssp HHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCS--CHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCC--CHHHHHHH
Confidence 136678888888889999999999987652 111 156788888765 99999999
Q ss_pred HHHHhccC--Ch----------hhHHHHHHhhcC--CCHHHHHHHHHHHHhchh
Q 021051 260 AEALGSIA--DD----------QSIGLLKEFAKD--PEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 260 ~~aL~~~~--~~----------~~~~~L~~~l~~--~~~~vr~~a~~aL~~l~~ 299 (318)
+.+|+.+. ++ +.++.+..++.+ +++.+|..++..+.++-.
T Consensus 675 agALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 675 AAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 99999973 32 467788888888 899999999999998874
No 67
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=98.84 E-value=2.5e-07 Score=88.01 Aligned_cols=259 Identities=11% Similarity=0.057 Sum_probs=164.3
Q ss_pred hhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC---------CChHHHHHHhccCCCHHHHHHHHHHHhccCC-------
Q 021051 15 PEMEKFLCDRLVDPTQPISERFRALFSLRNLKG---------PGPRDALIRATKDSSNLLAHEAAFALGQMQD------- 78 (318)
Q Consensus 15 ~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------- 78 (318)
+.-++.|...+++. .+|..|+-.|.+++. .+..+.+.++|.+++...|..|++.|+.+..
T Consensus 295 ~~~~~~L~~~l~~~----~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~ 370 (778)
T 3opb_A 295 ENYLQLLERSLNVE----DVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVPKVEMSVEALAYLSLKASVKIM 370 (778)
T ss_dssp HHHHHHHHHHTTSG----GGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHH
T ss_pred HhHHHHHHHHhccH----HHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHH
Confidence 33455555566542 456666666655432 1234444555555554456777777765542
Q ss_pred ----CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--------------------------------------------
Q 021051 79 ----AEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------------------------------------------- 110 (318)
Q Consensus 79 ----~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------------------------------------------- 110 (318)
..++..|++++++ ..+..+..+++..|.++.
T Consensus 371 L~~d~~~L~~Lv~llk~-~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~ 449 (778)
T 3opb_A 371 IRSNESFTEILLTMIKS-QKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFN 449 (778)
T ss_dssp HHHCHHHHHHHHHHHTT-TCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHhC-CCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHH
Confidence 1335666666662 134455556665555432
Q ss_pred -----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC
Q 021051 111 -----LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE 185 (318)
Q Consensus 111 -----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 185 (318)
+.++++.|.. +.+.+++.+|..++++|.++........ .+ ....+++.|+.++.+.
T Consensus 450 ~~~l~eaGvIp~Lv~-Ll~S~s~~~re~A~~aL~nLS~d~~~R~---~l---------------vqqGal~~LL~lL~s~ 510 (778)
T 3opb_A 450 EKYILRTELISFLKR-EMHNLSPNCKQQVVRIIYNITRSKNFIP---QL---------------AQQGAVKIILEYLANK 510 (778)
T ss_dssp HHHTTTTTHHHHHHH-HGGGSCHHHHHHHHHHHHHHHTSGGGHH---HH---------------HHTTHHHHHHHHTTCC
T ss_pred HHHHHHCcCHHHHHH-HHcCCCHHHHHHHHHHHHHHcCCHHHHH---HH---------------HHCCCHHHHHHHHhcC
Confidence 2335677777 5567889999999999998871100000 00 0134689999999876
Q ss_pred CcC-hHHHHHHHHHHHhCC---C----------hhHHHHHHHHhCC-CCH-------------HHHHHHHHHHhccCC--
Q 021051 186 EKG-MYERYAALFALRNHG---G----------DEAVSAIIDSLGA-TSA-------------LLKHEVAYVLGQLQN-- 235 (318)
Q Consensus 186 ~~~-~~~r~~a~~~L~~~~---~----------~~~~~~l~~~l~d-~~~-------------~vr~~a~~~L~~~~~-- 235 (318)
... ...|..|+.+|.++. + .++++.|.++|.. +.. .-+.+|+.+|+.+..
T Consensus 511 ~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~ 590 (778)
T 3opb_A 511 QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSE 590 (778)
T ss_dssp ---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCC
Confidence 543 124888999988752 1 2788999999872 211 226778888766531
Q ss_pred --------------cchHHHHHHHHhccCCCHHHHHHHHHHHhccC-Chh----------------hHHHHHHhhcCCCH
Q 021051 236 --------------KAASAALSDVLRNVNEHPMVRHEAAEALGSIA-DDQ----------------SIGLLKEFAKDPEP 284 (318)
Q Consensus 236 --------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~-~~~----------------~~~~L~~~l~~~~~ 284 (318)
..+++.|..++.+. +..||.+|++.+.++. ++. -++.|+.+++.++.
T Consensus 591 ~n~~E~~r~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~ 668 (778)
T 3opb_A 591 TSDGEEVCKHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDV 668 (778)
T ss_dssp SHHHHHHHHHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCH
T ss_pred cccchHHHHHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCH
Confidence 13578888888876 8999999999998863 221 16688899999999
Q ss_pred HHHHHHHHHHHhchh
Q 021051 285 IVSQSCEVALSMLEY 299 (318)
Q Consensus 285 ~vr~~a~~aL~~l~~ 299 (318)
.+|.+|.+||.++..
T Consensus 669 ~~r~AAagALAnLts 683 (778)
T 3opb_A 669 ESQRAVAAIFANIAT 683 (778)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999853
No 68
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=98.80 E-value=7.1e-08 Score=82.86 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=96.0
Q ss_pred CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCC-CcChHH
Q 021051 113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGE-EKGMYE 191 (318)
Q Consensus 113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~-~~~~~~ 191 (318)
+.++.|...+++++++.||..|+++|+.+.. +. +..... +....+++.|+.+|.++ +. .+
T Consensus 81 G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~--~n-~~~~~~--------------vv~~g~l~~Ll~LL~~~~~~--~v 141 (296)
T 1xqr_A 81 SGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQ--NV-AAIQEQ--------------VLGLGALRKLLRLLDRDACD--TV 141 (296)
T ss_dssp THHHHHHHTTTTCSSHHHHHHHHHHHHHHHT--TC-HHHHHH--------------HHHTTHHHHHHHHHHHCSCH--HH
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHHHHHHHh--CC-HHHHHH--------------HHHCCCHHHHHHHHccCCCH--HH
Confidence 4567777723468899999999999999861 00 000000 00124788999999743 33 35
Q ss_pred HHHHHHHHHhCC--C---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC-----------CcchHHHHHHHHhcc
Q 021051 192 RYAALFALRNHG--G---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ-----------NKAASAALSDVLRNV 249 (318)
Q Consensus 192 r~~a~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-----------~~~~~~~L~~~l~~~ 249 (318)
|..|+++|+++. . ...++.|..+++++++.++..|+.+|+.+. +..+++.|+.++.++
T Consensus 142 ~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~ 221 (296)
T 1xqr_A 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE 221 (296)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC
Confidence 899999998873 2 246677888888888888888888888763 135678888888876
Q ss_pred CCCHHHHHHHHHHHhccCCh
Q 021051 250 NEHPMVRHEAAEALGSIADD 269 (318)
Q Consensus 250 ~~~~~vr~~a~~aL~~~~~~ 269 (318)
++.+|..++.+|+.+-..
T Consensus 222 --d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 222 --HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp --CSTHHHHHHHHHHHHHTT
T ss_pred --ChhHHHHHHHHHHHHHhC
Confidence 788888888888888765
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=98.76 E-value=1.7e-07 Score=81.97 Aligned_cols=223 Identities=18% Similarity=0.158 Sum_probs=149.3
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhccCCC--C---cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHH----HHhh
Q 021051 51 RDALIRATKDSSNLLAHEAAFALGQMQDA--E---AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPL----LKNS 121 (318)
Q Consensus 51 ~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--~---~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~----L~~~ 121 (318)
...+.+++.++|..+|...-..+..+... . ++..|.+=+. ++++.+|..|+++|+++.+++.++. +.+
T Consensus 70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~--~~N~~iR~lALRtL~~I~~~~m~~~l~~~lk~- 146 (355)
T 3tjz_B 70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMT--GKEDSYRGPAVRALCQITDSTMLQAIERYMKQ- 146 (355)
T ss_dssp HHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHH--SSCHHHHHHHHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcC--CCcHhHHHHHHHHHhcCCCHHHHHHHHHHHHH-
Confidence 34456688999998887776666554432 2 3566667777 8999999999999999998876554 445
Q ss_pred hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHh
Q 021051 122 LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRN 201 (318)
Q Consensus 122 l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~ 201 (318)
...|++|.||+.|+.+..++- . ..+++ -+..++.+.+++.+.++.+ ...|+.+|..
T Consensus 147 ~L~d~~pyVRk~A~l~~~kL~--~-~~pe~-------------------v~~~~~~l~~ll~d~n~~V--~~~Al~lL~e 202 (355)
T 3tjz_B 147 AIVDKVPSVSSSALVSSLHLL--K-CSFDV-------------------VKRWVNEAQEAASSDNIMV--QYHALGLLYH 202 (355)
T ss_dssp HHTCSSHHHHHHHHHHHHHHT--T-TCHHH-------------------HHTTHHHHHHHTTCSSHHH--HHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHh--c-cCHHH-------------------HHHHHHHHHHHhcCCCccH--HHHHHHHHHH
Confidence 457999999999999998875 0 01100 0235778888888877654 7888888877
Q ss_pred CCC--hhHHHHHHHHhCCC---CHHHHHHHHHHHhccCCc-------chHHHHHHHHhccCCCHHHHHHHHHHHhccCCh
Q 021051 202 HGG--DEAVSAIIDSLGAT---SALLKHEVAYVLGQLQNK-------AASAALSDVLRNVNEHPMVRHEAAEALGSIADD 269 (318)
Q Consensus 202 ~~~--~~~~~~l~~~l~d~---~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~ 269 (318)
+.. ..++..++..+... ++......++.++.+... ...+.|...+++. ++.|.++|++++..+...
T Consensus 203 i~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~--~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 203 VRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK--HEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp HHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS--SHHHHHHHHHHHTC----
T ss_pred HHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCC
Confidence 753 44667777766442 688888888988887543 2345566666766 899999999999998652
Q ss_pred ------hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 270 ------QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 270 ------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.++..|..++.++++.+|..|...|..+.....
T Consensus 281 ~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P 319 (355)
T 3tjz_B 281 SAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHP 319 (355)
T ss_dssp -------CCCTHHHHHHSSSSSSHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCc
Confidence 245567777888888999999998888766544
No 70
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.5e-07 Score=78.82 Aligned_cols=172 Identities=12% Similarity=0.140 Sum_probs=119.9
Q ss_pred HHHHhhhcCCCCHHHHHHHHHHHHh-c--CC-------C---CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051 84 ALEAVLNDFSLHPIVRHEAAEALGA-I--GL-------E---SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 84 ~L~~~l~~~~~~~~vR~~a~~~L~~-~--~~-------~---~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
.+.+.+. +++|.-|..|+..|+. + +. . +.+..|.+.+.+|++..||..++.+++.+...... +.
T Consensus 20 ~f~~~l~--s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~-~~ 96 (249)
T 2qk1_A 20 DFQERIT--SSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKT-PG 96 (249)
T ss_dssp THHHHHT--CSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCT-TT
T ss_pred hHHHHhh--cCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-cc
Confidence 4556666 7888888888887777 5 21 1 13445666444799999999999999988721110 11
Q ss_pred ccccccCCCCc-ccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHH---h-C------C-ChhHHHHHHHHhCCC
Q 021051 151 GSSMTERSPFM-SVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALR---N-H------G-GDEAVSAIIDSLGAT 218 (318)
Q Consensus 151 ~~~~l~~~~~~-~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~---~-~------~-~~~~~~~l~~~l~d~ 218 (318)
+. .. ....++.+++.+.++...+ |..+..++- . . + -+..++.|...++++
T Consensus 97 ---------f~~~y-------~~~llp~ll~~l~dkk~~V--~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k 158 (249)
T 2qk1_A 97 ---------FSKDY-------VSLVFTPLLDRTKEKKPSV--IEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK 158 (249)
T ss_dssp ---------SCHHH-------HHHHHHHHHHGGGCCCHHH--HHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS
T ss_pred ---------ccHHH-------HHHHHHHHHHHHcCCCHHH--HHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC
Confidence 11 00 0235788999998877654 665544443 2 3 2 336788888999999
Q ss_pred CHHHHHHHHHHHhcc----C----------CcchHHHHHHHHhccCCCHHHHHHHHHHHhc----cCChhhHHHHHHh
Q 021051 219 SALLKHEVAYVLGQL----Q----------NKAASAALSDVLRNVNEHPMVRHEAAEALGS----IADDQSIGLLKEF 278 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~----~----------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~----~~~~~~~~~L~~~ 278 (318)
+|.+|..++.+|+.. + .+..+|.|.+.+.|. ++.||.+|..+|+. +|.....+++..+
T Consensus 159 ~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 159 TPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred ChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999999999998864 2 256788899999887 89999999999999 4666666666665
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.72 E-value=2.4e-07 Score=77.28 Aligned_cols=163 Identities=15% Similarity=0.125 Sum_probs=123.9
Q ss_pred HHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc-CCCcChHHHHHH
Q 021051 117 LLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL-GEEKGMYERYAA 195 (318)
Q Consensus 117 ~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~-~~~~~~~~r~~a 195 (318)
.+.+ ..+++++..|+.++..|..+.. +.+.+. ... -.+.++.|...+. +++.. +|..|
T Consensus 19 ~l~~-~l~s~~w~~R~~a~~~L~~l~~---~~~~~~----~~~-----------~~~i~~~L~~~l~kd~~~~--V~~~a 77 (242)
T 2qk2_A 19 DFYD-KLEEKKWTLRKESLEVLEKLLT---DHPKLE----NGE-----------YGALVSALKKVITKDSNVV--LVAMA 77 (242)
T ss_dssp THHH-HHTCSSHHHHHHHHHHHHHHHH---HCSSBC----CCC-----------CHHHHHHHHHHHHHCSCHH--HHHHH
T ss_pred HHHh-hhccCCHHHHHHHHHHHHHHHc---cCCCCC----CCC-----------HHHHHHHHHHHhccCCCHH--HHHHH
Confidence 4566 4579999999999999998861 100000 000 1246788888884 76665 59999
Q ss_pred HHHHHhCCC----------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHHHHHH
Q 021051 196 LFALRNHGG----------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRHEAAE 261 (318)
Q Consensus 196 ~~~L~~~~~----------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~~a~~ 261 (318)
+.+++.+.. ...++.|.+.+.|+.+.+|..+..+|..+.. ...++.|...+.+. +|.+|..++.
T Consensus 78 ~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~--~~~vr~~~l~ 155 (242)
T 2qk2_A 78 GKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNK--NPSVKSETAL 155 (242)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCS--CHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence 999988742 3567888888999999999999999987643 35678888888876 8999999999
Q ss_pred HHhcc-CC-----------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhc
Q 021051 262 ALGSI-AD-----------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 262 aL~~~-~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~ 302 (318)
.|+.+ .. +..++.|..++.|+++.||..|..+++.+...-.
T Consensus 156 ~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 156 FIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp HHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence 99984 21 2467888899999999999999999998875544
No 72
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.64 E-value=1.6e-06 Score=67.11 Aligned_cols=196 Identities=17% Similarity=0.138 Sum_probs=119.5
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC--CCCcHH----HHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccc
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG--LESNIP----LLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSS 153 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~--~~~~~~----~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~ 153 (318)
..+..+..+|. |+-|.|+.+|+..+..+. .++.+. .|.-++.++..-..-...+.++|.+.. . .+++
T Consensus 32 ~~l~~lI~~LD--DDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i--~Pe~-- 104 (253)
T 2db0_A 32 SVLKKLIELLD--DDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-E--KPEL-- 104 (253)
T ss_dssp HHHHHHHHHTT--CSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-H--CHHH--
T ss_pred HHHHHHHHHhc--cHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-h--CHHH--
Confidence 44555555555 555666666666665543 222221 222222345555555666666666551 0 0000
Q ss_pred cccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--Ch----hHHHHHHHHhCCCCHHHHHHHH
Q 021051 154 MTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG--GD----EAVSAIIDSLGATSALLKHEVA 227 (318)
Q Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~~----~~~~~l~~~l~d~~~~vr~~a~ 227 (318)
. ...+|.+++-++-.++.+ |....++|+.+. ++ .....+...+.+++..-|..|+
T Consensus 105 ---------v--------~~vVp~lfanyrigd~ki--kIn~~yaLeeIaranP~l~~~v~rdi~smltskd~~Dkl~aL 165 (253)
T 2db0_A 105 ---------V--------KSMIPVLFANYRIGDEKT--KINVSYALEEIAKANPMLMASIVRDFMSMLSSKNREDKLTAL 165 (253)
T ss_dssp ---------H--------HHHHHHHHHHSCCCSHHH--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHTSCSSHHHHHHHH
T ss_pred ---------H--------HhhHHHHHHHHhcCCccc--eecHHHHHHHHHHhChHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 0 124566666666665554 777777777663 22 3445566677888888888889
Q ss_pred HHHhccCCcc------hHHHHHHHHhccCCCHHHHHHHHHHHhccC--ChhhHHHHH---HhhcCCCHHHHHHHHHHHHh
Q 021051 228 YVLGQLQNKA------ASAALSDVLRNVNEHPMVRHEAAEALGSIA--DDQSIGLLK---EFAKDPEPIVSQSCEVALSM 296 (318)
Q Consensus 228 ~~L~~~~~~~------~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~~~~~~L~---~~l~~~~~~vr~~a~~aL~~ 296 (318)
+.++.+|... -+|.|..++.|. |..||..|+++|+.+. .+..-+.+. +-++|+...|......+|++
T Consensus 166 nFi~alGen~~~yv~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRkii~~kl~e~~D~S~lv~~~V~egL~r 243 (253)
T 2db0_A 166 NFIEAMGENSFKYVNPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRKVVIKRLEELNDTSSLVNKTVKEGISR 243 (253)
T ss_dssp HHHHTCCTTTHHHHGGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhccCccccCcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 9888888643 367778888877 8899999999999885 344333333 34677888899999999988
Q ss_pred chhhhcc
Q 021051 297 LEYEQLE 303 (318)
Q Consensus 297 l~~~~~~ 303 (318)
+.--+.+
T Consensus 244 l~l~e~~ 250 (253)
T 2db0_A 244 LLLLEGH 250 (253)
T ss_dssp HHHC---
T ss_pred HHHHhcc
Confidence 8655543
No 73
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=98.57 E-value=7.6e-07 Score=68.96 Aligned_cols=88 Identities=16% Similarity=0.237 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhCCC------hhHHHHHHHHhCCCCHHHHHHHHHHHhccC--CcchHHHHHHHH
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNHGG------DEAVSAIIDSLGATSALLKHEVAYVLGQLQ--NKAASAALSDVL 246 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~--~~~~~~~L~~~l 246 (318)
+..+..++.+++... |..|++-++.+|. ...+|.|..+|.|.+.-||..++..|+++. ++...+.+...+
T Consensus 146 ~rdi~smltskd~~D--kl~aLnFi~alGen~~~yv~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~~kl 223 (253)
T 2db0_A 146 VRDFMSMLSSKNRED--KLTALNFIEAMGENSFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIKRL 223 (253)
T ss_dssp HHHHHHHTSCSSHHH--HHHHHHHHHTCCTTTHHHHGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCChHH--HHHHHHHHHHHhccCccccCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 444555555444332 5555555555543 335555666666666666666666666553 233333333333
Q ss_pred ---hccCCCHHHHHHHHHHHhcc
Q 021051 247 ---RNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 247 ---~~~~~~~~vr~~a~~aL~~~ 266 (318)
.|. +..|.....++|+++
T Consensus 224 ~e~~D~--S~lv~~~V~egL~rl 244 (253)
T 2db0_A 224 EELNDT--SSLVNKTVKEGISRL 244 (253)
T ss_dssp HHCCCS--CHHHHHHHHHHHHHH
T ss_pred HHhcCc--HHHHHHHHHHHHHHH
Confidence 232 455555555555554
No 74
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=98.53 E-value=1.5e-05 Score=80.11 Aligned_cols=238 Identities=13% Similarity=0.086 Sum_probs=163.2
Q ss_pred ChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhc--CCCCcHHHHHhhhccC-
Q 021051 49 GPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAI--GLESNIPLLKNSLVSD- 125 (318)
Q Consensus 49 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~--~~~~~~~~L~~~l~~d- 125 (318)
+.+..+.+.+.+ .+..|...+.+|...|...++..+.+.+.+..-+......++..+..+ .+++.+..+.. +.+.
T Consensus 326 e~L~~l~~~~~~-~~~~r~~~lDal~~aGT~~a~~~i~~~i~~~~l~~~ea~~~l~~~~~~~~Pt~e~l~~~~~-l~~~~ 403 (1056)
T 1lsh_A 326 GVLQSIWHKLHQ-QKDYRRWILDAVPAMATSEALLFLKRTLASEQLTSAEATQIVASTLSNQQATRESLSYARE-LLNTS 403 (1056)
T ss_dssp HHHHHHHHHHTT-SHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTCCCCHHHHHHHHH-HHTCH
T ss_pred HHHHHHHHHHhc-cHHHHHHHHHHhHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHhhccCCCCHHHHHHHHH-HHhCc
Confidence 444455554443 367888899999999999999999999994322332222233333333 34456676766 4333
Q ss_pred ---CCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051 126 ---PAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH 202 (318)
Q Consensus 126 ---~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~ 202 (318)
+++.+|..+..+++.+.. .... ......... -+.....|.+.+...+. ..+..++++||++
T Consensus 404 ~~~~~~~l~~ta~La~gslV~-k~c~--------~~~~c~~~~-----v~~i~~~l~~~~~~~~~--~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 404 FIRNRPILRKTAVLGYGSLVF-RYCA--------NTVSCPDEL-----LQPLHDLLSQSSDRAKE--EEIVLALKALGNA 467 (1056)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH-HHHT--------TCSSCCGGG-----THHHHHHHHHHHHTTCH--HHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHH-HHhc--------cCCCCCHHH-----HHHHHHHHHHHHhcCCh--HHHHHHHHHhhcc
Confidence 478899999999988761 1100 000000000 02234555566655543 3589999999999
Q ss_pred CChhHHHHHHHHhCC-------CCHHHHHHHHHHHhccCCc---chHHHHHHHHhccCCCHHHHHHHHHHHhcc-CChhh
Q 021051 203 GGDEAVSAIIDSLGA-------TSALLKHEVAYVLGQLQNK---AASAALSDVLRNVNEHPMVRHEAAEALGSI-ADDQS 271 (318)
Q Consensus 203 ~~~~~~~~l~~~l~d-------~~~~vr~~a~~~L~~~~~~---~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~ 271 (318)
|.+..++.|.+++.. ....+|..|+.+|..+... .+.+.+.+...|..+++++|.+|+..|.+. .+...
T Consensus 468 g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~ 547 (1056)
T 1lsh_A 468 GQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVAL 547 (1056)
T ss_dssp TCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHH
T ss_pred CChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHH
Confidence 999999999888742 2467889999999998754 478899999988888999999999999886 44556
Q ss_pred HHHHHHhhc-CCCHHHHHHHHHHHHhchhhhcch
Q 021051 272 IGLLKEFAK-DPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 272 ~~~L~~~l~-~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+..+...+. +++.+|+......|..+...+...
T Consensus 548 l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~ 581 (1056)
T 1lsh_A 548 VSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE 581 (1056)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence 777777654 588999988888888887766544
No 75
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.46 E-value=1.3e-06 Score=73.11 Aligned_cols=180 Identities=16% Similarity=0.092 Sum_probs=110.7
Q ss_pred HHHHhhcCCCCCHHHHHHHHHHHhc-cC-C-C----------ChHHHHHHhc-cCCCHHHHHHHHHHHhccCCCCcHHHH
Q 021051 20 FLCDRLVDPTQPISERFRALFSLRN-LK-G-P----------GPRDALIRAT-KDSSNLLAHEAAFALGQMQDAEAIPAL 85 (318)
Q Consensus 20 ~L~~~L~~~~~~~~~r~~A~~~l~~-~~-~-~----------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~~~~~~~L 85 (318)
.+.+.+.+++ |..|..|+..+.. +. + + +.+..|.+.+ +|.+..+|..|+.+++.+..
T Consensus 20 ~f~~~l~s~~--w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~------- 90 (249)
T 2qk1_A 20 DFQERITSSK--WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD------- 90 (249)
T ss_dssp THHHHHTCSS--HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-------
T ss_pred hHHHHhhcCC--HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-------
Confidence 4556666654 7888888888777 52 1 1 1233444444 45555555555555554321
Q ss_pred HHhhhcCCCC-HHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccC
Q 021051 86 EAVLNDFSLH-PIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVD 164 (318)
Q Consensus 86 ~~~l~~~~~~-~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (318)
-+....-. +.. ...+|.+.. ..+|+.+.|+..+..++..+.. .. +
T Consensus 91 --~l~~~~f~~~y~-------------~~llp~ll~-~l~dkk~~V~~aa~~al~~i~~--~~----------------~ 136 (249)
T 2qk1_A 91 --KLKTPGFSKDYV-------------SLVFTPLLD-RTKEKKPSVIEAIRKALLTICK--YY----------------D 136 (249)
T ss_dssp --HHCTTTSCHHHH-------------HHHHHHHHH-GGGCCCHHHHHHHHHHHHHHHH--HS----------------C
T ss_pred --hcccccccHHHH-------------HHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHH--Hc----------------c
Confidence 11100111 111 024566667 4478899999999998887761 11 0
Q ss_pred CCCCCC-CCccHHHHHHHHcCCCcChHHHHHHHHHHHhC----C----------ChhHHHHHHHHhCCCCHHHHHHHHHH
Q 021051 165 PAAPAS-SCSSVDMLREVLLGEEKGMYERYAALFALRNH----G----------GDEAVSAIIDSLGATSALLKHEVAYV 229 (318)
Q Consensus 165 ~~~~~~-~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~----~----------~~~~~~~l~~~l~d~~~~vr~~a~~~ 229 (318)
+..... -+..++.|+..+.++++. +|..++..++.. + .+..++.+.+++.|+++.||..|..+
T Consensus 137 ~~~~~~~l~~ll~~l~~~l~~k~~~--vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~ 214 (249)
T 2qk1_A 137 PLASSGRNEDMLKDILEHMKHKTPQ--IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFES 214 (249)
T ss_dssp TTCTTCTTHHHHHHHHHHTTCSSHH--HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 000000 123678899999888775 599998888765 3 25677888899999999999999999
Q ss_pred Hhc----cCCcchHHHHHH
Q 021051 230 LGQ----LQNKAASAALSD 244 (318)
Q Consensus 230 L~~----~~~~~~~~~L~~ 244 (318)
++. +|+....+.+-.
T Consensus 215 l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 215 FAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp HHHHHHHHCSGGGHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 998 455555555544
No 76
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.36 E-value=7.5e-06 Score=66.04 Aligned_cols=165 Identities=16% Similarity=0.170 Sum_probs=117.0
Q ss_pred CcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHH
Q 021051 113 SNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYER 192 (318)
Q Consensus 113 ~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r 192 (318)
+.+..|.+ +++|+|+.++..+..++..+-. ...+.... .. -++.++.+++++.+++..+ -
T Consensus 33 ~~l~~L~~-LL~dkD~~vk~raL~~LeellK--~~~~~l~~-------~~--------~e~~Ld~iI~llk~~dEkv--a 92 (265)
T 3b2a_A 33 RALFLILE-LAGEDDETTRLRAFVALGEILK--RADSDLRM-------MV--------LERHLDVFINALSQENEKV--T 92 (265)
T ss_dssp HHHHHHHH-HTTSSCHHHHHHHHHHHHHHHH--HSCHHHHH-------HH--------HHHHHHHHHHTCCSTTHHH--H
T ss_pred hHHHHHHH-HHhccchHHHHHHHHHHHHHHH--hccccccH-------HH--------HHHHHHHHHHHHhccchhH--H
Confidence 45666666 5577777777777777766541 00000000 00 0346788898998888765 6
Q ss_pred HHHHHHHHhC--C---Ch----hHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHHHH
Q 021051 193 YAALFALRNH--G---GD----EAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRHEA 259 (318)
Q Consensus 193 ~~a~~~L~~~--~---~~----~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~~a 259 (318)
..|+.+++.+ + ++ .....+...+.++++-++.+++..+|.++. +....+|..++.+. |+.++.++
T Consensus 93 l~A~r~L~~LLe~vpL~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~~~~V~~~l~sLl~Sk--d~~vK~ag 170 (265)
T 3b2a_A 93 IKALRALGYLVKDVPMGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKLQPLEDSKLVRTYINELVVSP--DLYTKVAG 170 (265)
T ss_dssp HHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHHHHTCS--SHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcCCcccchHHHHHHHHHHHhCC--ChhHHHHH
Confidence 6677777765 1 23 334455556678999999999999999863 46889999999766 99999999
Q ss_pred HHHHhccCC--------hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 260 AEALGSIAD--------DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 260 ~~aL~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
+.++-+++. ...+..+..+++.+|++++..|..+|..+-.
T Consensus 171 l~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils 218 (265)
T 3b2a_A 171 FCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALS 218 (265)
T ss_dssp HHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 999999863 2456677788999999999999999987643
No 77
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.21 E-value=8.2e-06 Score=67.20 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=23.2
Q ss_pred CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 112 ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 112 ~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
...+|.|.+ ++..+++.++..|+++|.++.
T Consensus 51 ~G~Ip~LV~-lL~s~~~~vq~~Aa~aL~nLa 80 (233)
T 3tt9_A 51 LRGILKLLQ-LLKVQNEDVQRAVCGALRNLV 80 (233)
T ss_dssp TTHHHHHHH-GGGCCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHH-HHcCCCHHHHHHHHHHHHHHH
Confidence 356788888 556778888888888888887
No 78
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.13 E-value=2.6e-05 Score=62.93 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC---
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA--- 79 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~--- 79 (318)
+++.+..|..+|.++++ .++.+++.+++++-. ++..+.++.++.++|..+-..|+++|+.+=..
T Consensus 31 ~e~~l~~L~~LL~dkD~--~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL 108 (265)
T 3b2a_A 31 DKRALFLILELAGEDDE--TTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPM 108 (265)
T ss_dssp CHHHHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCB
T ss_pred chhHHHHHHHHHhccch--HHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCC
Confidence 34455556666665554 666666666655422 23455555555666666666666666543210
Q ss_pred ------CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 ------EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ------~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.....|...++ .+++.++..++..++.+.. +.....+.+ +.+++++.++.++..++-.++
T Consensus 109 ~~~~y~Kl~~aL~dlik--~~~~il~~eaae~Lgklkv~~~~~~V~~~l~s-Ll~Skd~~vK~agl~~L~eia 178 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLE--SPDDMMRIETIDVLSKLQPLEDSKLVRTYINE-LVVSPDLYTKVAGFCLFLNML 178 (265)
T ss_dssp CHHHHHHHHHHHHHHTT--SCCHHHHHHHHHHHHHCCBSCCCHHHHHHHHH-HHTCSSHHHHHHHHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhc--CCCchHHHHHHHHhCcCCcccchHHHHHHHHH-HHhCCChhHHHHHHHHHHHhh
Confidence 12344444555 5666666666666666542 223444555 335666666666666666555
No 79
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=98.07 E-value=3.6e-05 Score=62.49 Aligned_cols=124 Identities=15% Similarity=0.130 Sum_probs=94.6
Q ss_pred HHHHHHHcCCCcChHHHHHHHHHHHhCC-ChhHHHHHHH-HhCCCCHHHHHHHHHHHhccC----CcchHHHHHHHHhcc
Q 021051 176 DMLREVLLGEEKGMYERYAALFALRNHG-GDEAVSAIID-SLGATSALLKHEVAYVLGQLQ----NKAASAALSDVLRNV 249 (318)
Q Consensus 176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~-~~~~~~~l~~-~l~d~~~~vr~~a~~~L~~~~----~~~~~~~L~~~l~~~ 249 (318)
+....+..++.. .+|..|+.+|++.. ..+.++.+.. +-.|++|.||..+..+++.+. ....++.+.....|+
T Consensus 74 ~la~~L~~~~~d--eVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~d~ 151 (240)
T 3l9t_A 74 KLAFLAYQSDVY--QVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLKSS 151 (240)
T ss_dssp HHHHHHHTCSSH--HHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHHCS
T ss_pred HHHHHHHhCcch--HHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCC
Confidence 333344445554 46999999999863 3456677776 567899999999999998764 234688889888887
Q ss_pred CCCHHHHHHHHHHHhcc-------CCh-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcc
Q 021051 250 NEHPMVRHEAAEALGSI-------ADD-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 250 ~~~~~vr~~a~~aL~~~-------~~~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~ 303 (318)
++.||+.|++.+... .++ .+++.|..+..|++.+||+++.++|.-+.....+
T Consensus 152 --n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd 211 (240)
T 3l9t_A 152 --NLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKFPD 211 (240)
T ss_dssp --SHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHH
T ss_pred --CHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHH
Confidence 999999999997431 122 3677788888999999999999999999877664
No 80
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.84 E-value=0.00069 Score=66.71 Aligned_cols=254 Identities=17% Similarity=0.168 Sum_probs=163.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhcc-CCC--------ChHHHHHHhccCCCHHHHHHHHHHHhccCCC-----C---
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNL-KGP--------GPRDALIRATKDSSNLLAHEAAFALGQMQDA-----E--- 80 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~-~~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----~--- 80 (318)
++.+.+.+...+. ..+..+...+..+ ... ...+.|.+.+.+.... ..|+.+++.+... .
T Consensus 16 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~ 91 (986)
T 2iw3_A 16 LEELFQKLSVATA--DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEP 91 (986)
T ss_dssp HHHHHHHHTTCCT--TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHH
T ss_pred HHHHHhhccccch--hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCccc
Confidence 4445555665433 3445555444443 211 3677777777766433 7777777665521 2
Q ss_pred ----cHHHHHHhhhcCCCCHHHHHHHHHHHHhc---CCCC----cHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051 81 ----AIPALEAVLNDFSLHPIVRHEAAEALGAI---GLES----NIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS 149 (318)
Q Consensus 81 ----~~~~L~~~l~~~~~~~~vR~~a~~~L~~~---~~~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~ 149 (318)
.++.++..+. |+...||.+|..++..+ -++. .+|.|...+.+...+..+..+...+.++.+ .+..
T Consensus 92 ~~~~~~~~~~~~~~--dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~--~~~~ 167 (986)
T 2iw3_A 92 YIVQLVPAICTNAG--NKDKEIQSVASETLISIVNAVNPVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVD--AAKD 167 (986)
T ss_dssp HHHTTHHHHHHHTT--CSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HSHH
T ss_pred chHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH--HhHH
Confidence 2455566666 88999998887766543 2333 456777756555579999999999998871 1111
Q ss_pred cccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCC----C---hhHHHHHHHHhCCCCHHH
Q 021051 150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHG----G---DEAVSAIIDSLGATSALL 222 (318)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~----~---~~~~~~l~~~l~d~~~~v 222 (318)
.+...+ ++.+|.+.+.+.|..+++ ..+|..++..++ + ...+|.|++++.+++.
T Consensus 168 ~~~~~~----------------~~~~p~~~~~~~d~k~~v--~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p~~-- 227 (986)
T 2iw3_A 168 QVALRM----------------PELIPVLSETMWDTKKEV--KAAATAAMTKATETVDNKDIERFIPSLIQCIADPTE-- 227 (986)
T ss_dssp HHHHHH----------------HHHHHHHHHHTTCSSHHH--HHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCTTH--
T ss_pred HHHHhc----------------cchhcchHhhcccCcHHH--HHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcChhh--
Confidence 111111 346788888888888775 788887777653 2 4678999999988854
Q ss_pred HHHHHHHHhccCC-----c----chHHHHHHHHhccCCCHHHHHHHHHHHhccC----Ch--------hhHHHHHHhhcC
Q 021051 223 KHEVAYVLGQLQN-----K----AASAALSDVLRNVNEHPMVRHEAAEALGSIA----DD--------QSIGLLKEFAKD 281 (318)
Q Consensus 223 r~~a~~~L~~~~~-----~----~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~----~~--------~~~~~L~~~l~~ 281 (318)
-.+++..|+.-.- . -.+|.|...+.+. ...+++.++-.+.++. ++ ..+|.+.+....
T Consensus 228 ~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~--~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~ 305 (986)
T 2iw3_A 228 VPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNER--ETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFAT 305 (986)
T ss_dssp HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSS--SHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTT
T ss_pred hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccC--cchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhc
Confidence 5567888876432 1 2457777777765 6777777777777764 22 345556665554
Q ss_pred -CCHHHHHHHHHHHHhchhhh
Q 021051 282 -PEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 282 -~~~~vr~~a~~aL~~l~~~~ 301 (318)
.+|++|..|..|+..+..-.
T Consensus 306 ~~~pe~r~~~~~a~~~l~~~~ 326 (986)
T 2iw3_A 306 IADPEAREVTLRALKTLRRVG 326 (986)
T ss_dssp CCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh
Confidence 78999999999999885543
No 81
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.80 E-value=0.00056 Score=62.29 Aligned_cols=238 Identities=13% Similarity=0.101 Sum_probs=145.7
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCC
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSL 94 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~ 94 (318)
.-+.|..-|-|+. |++|.-|+-.|+++-. ....... .. .+.+-.+|...+-+|-++++ ...+ .-
T Consensus 175 fcE~L~~DLFdp~--WEiRHGAALGLREILR~hG~GAGR~-~~-~N~DLAvRLLCVLALDRFGD---------YVSD-qV 240 (800)
T 3oc3_A 175 FFEQISDNLLSYE--WYKRHGAFLAFAAMFSEIDNGGDIQ-IR-VDSKLFSKIYEILVTDKFND---------FVDD-RT 240 (800)
T ss_dssp TTHHHHHHTTCSS--HHHHHHHHHHHHHHHHHCC----CC-CC-CCTTHHHHHHHHHHHBCCBB---------CSSS-SC
T ss_pred HHHHHHHHhcCcc--hhhhhHHHHHHHHHHHHhccCCcee-cc-ccHHHHHHHHHHHHhccccc---------cccC-ee
Confidence 4556666677665 8999998888877421 0000000 11 12266777777787877776 2221 12
Q ss_pred CHHHHHHHHHHHHhcCC-CCcHHHHHhh--hccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCC
Q 021051 95 HPIVRHEAAEALGAIGL-ESNIPLLKNS--LVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASS 171 (318)
Q Consensus 95 ~~~vR~~a~~~L~~~~~-~~~~~~L~~~--l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 171 (318)
-..||..|.++||.+.. ++....|..+ ....+.++||..+..+|..+. +.+.. +
T Consensus 241 VAPVRETaAQtLGaL~hLp~e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~----------DLL~~--L----------- 297 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRIYPLIGPNDIIEQLVGFLDSGDWQVQFSGLIALGYLK----------EFVED--K----------- 297 (800)
T ss_dssp BCHHHHHHHHHHHHHTTTSCSCCHHHHHTTGGGCSCHHHHHHHHHHHHHTG----------GGCCC--H-----------
T ss_pred eeehHHHHHHHHHHHHhCChhHHHHHHHHhhcCCCCeeehhhhHHHHHHHH----------HHHHH--H-----------
Confidence 25788888888887621 1113333331 236678888888888887543 11110 0
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHH----HhCC--CCHHHHHHHHHHHhc--------cCCcc
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIID----SLGA--TSALLKHEVAYVLGQ--------LQNKA 237 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~----~l~d--~~~~vr~~a~~~L~~--------~~~~~ 237 (318)
...++.++..|.|.++++ |..|+.+|.-+..++.++.+.+ +|.+ +-.......+..|+. ..++.
T Consensus 298 d~Vv~aVL~GL~D~DDDV--RAVAAetLiPIA~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~ 375 (800)
T 3oc3_A 298 DGLCRKLVSLLSSPDEDI--KLLSAELLCHFPITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPE 375 (800)
T ss_dssp HHHHHHHHHHTTCSSHHH--HHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSG
T ss_pred HHHHHHHHhhcCCcccHH--HHHHHHHhhhhcchhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChH
Confidence 235677778887777664 8888888877655444444443 2221 111111222333333 23457
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHH-hhcCCCHHHHHHHHHHHH
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE-FAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~~~~~~vr~~a~~aL~ 295 (318)
.+|.|..++.+. -+.||.+++++|..+-...++..+.+ ++-+.+++|+..+..+..
T Consensus 376 LVPRL~PFLRHt--ITSVR~AVL~TL~tfL~~~~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 376 RLKDIFPCFTSP--VPEVRTSILNMVKNLSEESIDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp GGGGTGGGGTCS--SHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhcCC--cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 788899999987 79999999999999887777777776 677888889887777664
No 82
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.78 E-value=0.00097 Score=65.70 Aligned_cols=221 Identities=13% Similarity=0.145 Sum_probs=155.1
Q ss_pred ChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-----C-------ChHHHHHHhccCCCHHHHHHHHHHHhcc---CC
Q 021051 14 SPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-----P-------GPRDALIRATKDSSNLLAHEAAFALGQM---QD 78 (318)
Q Consensus 14 ~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-----~-------~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~ 78 (318)
....++.|.+.+.++.. . ..|+..++.+.. + ...+.+...+.|....||.+|..++..+ -.
T Consensus 52 ~~~~~~~~~~~~~~k~~--~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~ 127 (986)
T 2iw3_A 52 PEHFFGELAKGIKDKKT--A--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN 127 (986)
T ss_dssp CHHHHHHHHHHHTSHHH--H--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC
T ss_pred chhHHHHHHHHHhccCC--H--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC
Confidence 34678888999988864 2 556666655542 1 2356666677899999998877665432 23
Q ss_pred C----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhh
Q 021051 79 A----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPLLKNSLVSDPAQEVRETCELALERIEKL 144 (318)
Q Consensus 79 ~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~ 144 (318)
+ ..+|.|...+.+ ...|..+.+|+..++.+.. ++.+|.+.. ...|..++|..++..++..+.
T Consensus 128 ~~a~~~~~~~~~~~~~~-~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~d~k~~v~~~~~~~~~~~~-- 203 (986)
T 2iw3_A 128 PVAIKALLPHLTNAIVE-TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSE-TMWDTKKEVKAAATAAMTKAT-- 203 (986)
T ss_dssp GGGHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHG--
T ss_pred HHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHh-hcccCcHHHHHHHHHHHHHHH--
Confidence 3 346777777773 3469999999999987752 457888888 568999999999999999887
Q ss_pred hccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-----h----hHHHHHHHHh
Q 021051 145 KASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-----D----EAVSAIIDSL 215 (318)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-----~----~~~~~l~~~l 215 (318)
..+.+.++ +..+|.|++.+.+++. -..++..|+...- . -..|.|...|
T Consensus 204 --------~~~~n~d~-----------~~~~~~~~~~~~~p~~----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l 260 (986)
T 2iw3_A 204 --------ETVDNKDI-----------ERFIPSLIQCIADPTE----VPETVHLLGATTFVAEVTPATLSIMVPLLSRGL 260 (986)
T ss_dssp --------GGCCCTTT-----------GGGHHHHHHHHHCTTH----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHH
T ss_pred --------hcCCCcch-----------hhhHHHHHHHhcChhh----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhhh
Confidence 12222222 2369999999988854 4556777776532 1 3457778888
Q ss_pred CCCCHHHHHHHHHHHhccCC------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 216 GATSALLKHEVAYVLGQLQN------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 216 ~d~~~~vr~~a~~~L~~~~~------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
++....+++.++-.+.+|.. +..+|.|....... .+|++|.-+-+|+..+
T Consensus 261 ~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~-~~pe~r~~~~~a~~~l 322 (986)
T 2iw3_A 261 NERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATI-ADPEAREVTLRALKTL 322 (986)
T ss_dssp TSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTC-CSHHHHHHHHHHHHHH
T ss_pred ccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhcc-CCHHHHHHHHHHHHHH
Confidence 99999999999888888752 44556666655544 3899998887776655
No 83
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=97.75 E-value=0.00024 Score=57.67 Aligned_cols=121 Identities=21% Similarity=0.151 Sum_probs=88.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHH-hccCCCHHHHHHHHHHHhccC----CCCcHHHHHHhhhc
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIR-ATKDSSNLLAHEAAFALGQMQ----DAEAIPALEAVLND 91 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~-~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~l~~ 91 (318)
...+...|-..+. .++|..|+..++.... ++..+.+.+ +-.|+++.||..++.+++.+. ....++.+.....
T Consensus 72 ~~~la~~L~~~~~-deVR~~Av~lLg~~~~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~~l~~~~~W~~- 149 (240)
T 3l9t_A 72 IKKLAFLAYQSDV-YQVRMYAVFLFGYLSKDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKKALPIIDEWLK- 149 (240)
T ss_dssp HHHHHHHHHTCSS-HHHHHHHHHHHHHTTTSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTTTHHHHHHHHH-
T ss_pred HHHHHHHHHhCcc-hHHHHHHHHHHHhccCcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHHHHhc-
Confidence 3344444444443 3899999999987721 234555555 336889999999999888654 3346788888888
Q ss_pred CCCCHHHHHHHHHHHHh---c----CCC-CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 92 FSLHPIVRHEAAEALGA---I----GLE-SNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 92 ~~~~~~vR~~a~~~L~~---~----~~~-~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
|+++.||+.|+..+.. . .++ ..++.|.. +..|++..||++.+++|..+.
T Consensus 150 -d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~-L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 150 -SSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIAD-LKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp -CSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHT-TTTCSCHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence 9999999999998733 1 122 24566666 789999999999999999887
No 84
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.58 E-value=0.00015 Score=59.61 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=66.8
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCC--C---------hhHHHHHHHHhCCCCHHHHHHHHHHHhccCC------
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHG--G---------DEAVSAIIDSLGATSALLKHEVAYVLGQLQN------ 235 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~--~---------~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~------ 235 (318)
-.++.|+++|.++++...++..|+..+.++. + ..++|.|+++|.++++.++..|+.+|+.+..
T Consensus 8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 4699999999888873334777777776653 1 2567888888888888888888888887642
Q ss_pred -----cchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 236 -----KAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 236 -----~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
..++|.|++++.+.. ++.++..|+.+|..+.
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~-~~~~~e~a~~aL~nLS 123 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTR-DLETKKQITGLLWNLS 123 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHccCC-CHHHHHHHHHHHHHHH
Confidence 346788888886421 6777777776666664
No 85
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0016 Score=54.98 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=112.4
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhc-C--------------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCc
Q 021051 85 LEAVLNDFSLHPIVRHEAAEALGAI-G--------------LESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGS 149 (318)
Q Consensus 85 L~~~l~~~~~~~~vR~~a~~~L~~~-~--------------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~ 149 (318)
|.+-+. +++|..|..|+..|..+ . .....+.+.+ ...|.+..|...++.++..+.. ...
T Consensus 14 l~e~l~--sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk-~l~DsN~~v~~~al~~l~~~~~---~~~ 87 (278)
T 4ffb_C 14 LEERLT--YKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQ-YITDSNVVAQEQAIVALNSLID---AFA 87 (278)
T ss_dssp HHHHTT--CSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHH-HTTCSSHHHHHHHHHHHHHHHT---TCC
T ss_pred HHHhcc--cCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHH---Hhh
Confidence 455666 67777777777766432 0 1123456666 5589999999999998887651 000
Q ss_pred cccccccCCCCcccCCCCCCCCCccHHHHHHH-HcCCCcChHHHHHHHHHHHhC-----CChhHHHHHHHHhCCCCHHHH
Q 021051 150 DGSSMTERSPFMSVDPAAPASSCSSVDMLREV-LLGEEKGMYERYAALFALRNH-----GGDEAVSAIIDSLGATSALLK 223 (318)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~-l~~~~~~~~~r~~a~~~L~~~-----~~~~~~~~l~~~l~d~~~~vr 223 (318)
. .......+... ....++.|++- +.+....+ |..++.++..+ .....++.+...+++.+|.++
T Consensus 88 ~--~~~~~~~~~~~-------~~~~l~~lveK~l~~~k~~~--~~~a~~~l~~~~~~~~~~~~~~e~l~~~l~~Knpkv~ 156 (278)
T 4ffb_C 88 S--SSLKNAHNITL-------ISTWTPLLVEKGLTSSRATT--KTQSMSCILSLCGLDTSITQSVELVIPFFEKKLPKLI 156 (278)
T ss_dssp -----CCHHHHHHH-------HHHHHHHHHHHTSSCCCHHH--HHHHHHHHHHHHHTSSSSHHHHHHHGGGGGCSCHHHH
T ss_pred h--hhcccchhHHH-------HHHHHHHHHHHHhcCccHHH--HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhccCHHHH
Confidence 0 00000000000 01134555544 55665544 76666655433 234567778888899999999
Q ss_pred HHHHHHHhcc----CCc---------chHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--hhHHHHHH-hhcCCCHHHH
Q 021051 224 HEVAYVLGQL----QNK---------AASAALSDVLRNVNEHPMVRHEAAEALGSIADD--QSIGLLKE-FAKDPEPIVS 287 (318)
Q Consensus 224 ~~a~~~L~~~----~~~---------~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~--~~~~~L~~-~l~~~~~~vr 287 (318)
..++.+|..+ +.. ..++.+..++.+. |+.||.+|+..++.+-.- +.+..+.. ++.+-.+...
T Consensus 157 ~~~l~~l~~~l~~fg~~~~~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~~lkp~~~ 234 (278)
T 4ffb_C 157 AAAANCVYELMAAFGLTNVNVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYKVTGNNSDLLEEILFKKLKPIQV 234 (278)
T ss_dssp HHHHHHHHHHHHHHTTTTCCHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHTC-----------CTTSSCHHHH
T ss_pred HHHHHHHHHHHHHhCCCcCCchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCcchhhhhhhhhhcCCHHHH
Confidence 9998888763 221 1334566677887 899999999988775210 11222332 3455556666
Q ss_pred HHHHHHHHhchhh
Q 021051 288 QSCEVALSMLEYE 300 (318)
Q Consensus 288 ~~a~~aL~~l~~~ 300 (318)
......+.++...
T Consensus 235 k~le~~f~k~~~~ 247 (278)
T 4ffb_C 235 KDLHKLFAKVGDE 247 (278)
T ss_dssp HHHHHHHSCCCC-
T ss_pred HHHHHHHHhcCCC
Confidence 6666666666443
No 86
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=97.39 E-value=0.012 Score=55.05 Aligned_cols=270 Identities=16% Similarity=0.172 Sum_probs=170.9
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCC-------ChHHHHHHhcc-C-CCHHHHHHHHHHHhc-cC----
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGP-------GPRDALIRATK-D-SSNLLAHEAAFALGQ-MQ---- 77 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-------~~~~~L~~~l~-d-~~~~vr~~a~~aL~~-~~---- 77 (318)
+...++++.|++-|.+..- .+.|..|+..|..+..+ .+.+.|+..|+ | .|..+-..++.+|.. +.
T Consensus 17 qs~~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTL-LDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred CChhhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 3566899999999987764 68999999999887652 24777777774 3 366666667776632 11
Q ss_pred ------------------------CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC-------------CCCcHHHHHh
Q 021051 78 ------------------------DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIG-------------LESNIPLLKN 120 (318)
Q Consensus 78 ------------------------~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~-------------~~~~~~~L~~ 120 (318)
..+.++.|+.+|. .++..+|..+++.|..+. .+..++.|..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~--~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLE--EFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp ------------CHHHHHHHHHHHSTHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred ccccccccccchHHHHHHHHHHHcCCccHHHHHHHhc--CccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 1244788899998 899999999999887653 4678899999
Q ss_pred hhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCc--ChHHHHHHHHH
Q 021051 121 SLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEK--GMYERYAALFA 198 (318)
Q Consensus 121 ~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~--~~~~r~~a~~~ 198 (318)
+++|+...+|..++..|..+. .....+-..+. -+.+++.|+..+..... ...+-..++..
T Consensus 174 -lL~d~rE~iRneallLL~~Lt---~~n~~iQklVA--------------FEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~l 235 (651)
T 3grl_A 174 -LLADSREVIRNDGVLLLQALT---RSNGAIQKIVA--------------FENAFERLLDIITEEGNSDGGIVVEDCLIL 235 (651)
T ss_dssp -GGGCSSHHHHHHHHHHHHHHH---TTCHHHHHHHH--------------HTTHHHHHHHHHHHHTGGGSHHHHHHHHHH
T ss_pred -HHhCchHHHHHHHHHHHHHHh---cCCHHHHHHHH--------------HhccHHHHHHHHHhcCCCccchhHHHHHHH
Confidence 778999999999999999886 11111000000 13467888888865443 11133344444
Q ss_pred HHhCC--C---------hhHHHHHHHHhCCCC----H--HHHHH---HHHHHhccC-----------------CcchHHH
Q 021051 199 LRNHG--G---------DEAVSAIIDSLGATS----A--LLKHE---VAYVLGQLQ-----------------NKAASAA 241 (318)
Q Consensus 199 L~~~~--~---------~~~~~~l~~~l~d~~----~--~vr~~---a~~~L~~~~-----------------~~~~~~~ 241 (318)
+.++- + ...++.|..++..++ | ..... ++.++.-+- ....++.
T Consensus 236 l~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~ 315 (651)
T 3grl_A 236 LQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ 315 (651)
T ss_dssp HHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHH
Confidence 44431 1 134445555554221 1 11122 222222221 1234677
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhccC--Ch------------------hhHHHHHHhhcC-CCHHHHHHHHHHHHhchhh
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSIA--DD------------------QSIGLLKEFAKD-PEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~~--~~------------------~~~~~L~~~l~~-~~~~vr~~a~~aL~~l~~~ 300 (318)
|++++-...-...+|..|+.+++.+- .+ ..+..|..++++ ....+|.+++..+.-+-++
T Consensus 316 Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~ 395 (651)
T 3grl_A 316 LCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYK 395 (651)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhC
Confidence 77877654446789999999998863 21 234445555665 4588899999999988777
Q ss_pred hc
Q 021051 301 QL 302 (318)
Q Consensus 301 ~~ 302 (318)
+.
T Consensus 396 N~ 397 (651)
T 3grl_A 396 NQ 397 (651)
T ss_dssp CH
T ss_pred CH
Confidence 65
No 87
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=97.20 E-value=0.0055 Score=55.98 Aligned_cols=208 Identities=13% Similarity=0.037 Sum_probs=136.0
Q ss_pred hHHHHHHhccCCCHHHHHHHHHHHhccCC--CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCC-
Q 021051 50 PRDALIRATKDSSNLLAHEAAFALGQMQD--AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDP- 126 (318)
Q Consensus 50 ~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~- 126 (318)
.-+.|..-|-|+.|.+|..|+-+|.++-. ....... ...+.|-.+|.-++-+|-++|| +.+|.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~----~~~N~DLAvRLLCVLALDRFGD----------YVSDqV 240 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQ----IRVDSKLFSKIYEILVTDKFND----------FVDDRT 240 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CC----CCCCTTHHHHHHHHHHHBCCBB----------CSSSSC
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCcee----ccccHHHHHHHHHHHHhccccc----------cccCee
Confidence 45566666678888999888888765310 0000000 1113477888888888888876 32332
Q ss_pred CHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC--
Q 021051 127 AQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGG-- 204 (318)
Q Consensus 127 ~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-- 204 (318)
-..||..++.+|+.+. ..+.. -..+..|+..+..+.|. +|..++-.|..+.+
T Consensus 241 VAPVRETaAQtLGaL~-hLp~e-----------------------~~IL~qLV~~l~~~~WE--VRHGGLLGLKYL~DLL 294 (800)
T 3oc3_A 241 VAPVRDAAAYLLSRIY-PLIGP-----------------------NDIIEQLVGFLDSGDWQ--VQFSGLIALGYLKEFV 294 (800)
T ss_dssp BCHHHHHHHHHHHHHT-TTSCS-----------------------CCHHHHHTTGGGCSCHH--HHHHHHHHHHHTGGGC
T ss_pred eeehHHHHHHHHHHHH-hCChh-----------------------HHHHHHHHhhcCCCCee--ehhhhHHHHHHHHHHH
Confidence 3579999999999763 22111 12455666656677766 49999988887743
Q ss_pred ---hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHh----ccCCCHHHH-HHHHHHHhc---c-----CC
Q 021051 205 ---DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLR----NVNEHPMVR-HEAAEALGS---I-----AD 268 (318)
Q Consensus 205 ---~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----~~~~~~~vr-~~a~~aL~~---~-----~~ 268 (318)
+..++.+...|.|.+.+||..|+.+|--+..++.++.|+..+. +-+ |-... ...+.-|+. . .+
T Consensus 295 ~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA~p~~l~~LL~iLWd~L~~LD-DLSASTgSVMdLLAkL~s~p~~a~~d 373 (800)
T 3oc3_A 295 EDKDGLCRKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEE-LISVSKTSNLSLLTKIYRENPELSIP 373 (800)
T ss_dssp CCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHTCC-SCCTTHHHHHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHHHHhhcCCcccHHHHHHHHHhhhhcchhhHHHHHHHHHHHhhhhc-ccchhhHHHHHHHHHHHcCCcccccC
Confidence 4567788889999999999999999998877666666666553 221 21111 111222222 1 24
Q ss_pred hhhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 269 DQSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 269 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
+..+|.|..++.-+-..||.++..+|..+-
T Consensus 374 p~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 374 PERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp SGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 567888888899899999999999998876
No 88
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=97.03 E-value=0.0029 Score=52.77 Aligned_cols=125 Identities=13% Similarity=0.020 Sum_probs=78.5
Q ss_pred cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC-
Q 021051 124 SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH- 202 (318)
Q Consensus 124 ~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~- 202 (318)
.|.++.|-..+...|..+-+..... .+...+.. ..-.+|.|++-+.|+.+.+ |..+...+..+
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~----------~y~~~~~e----a~~~lP~LveKlGd~k~~v--R~~~r~il~~l~ 160 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDT----------ETPMSQEE----VSAFVPYLLLKTGEAKDNM--RTSVRDIVNVLS 160 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHT----------TCCCCHHH----HHHHHHHHHHGGGCSSHHH--HHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhc----------cccchHHH----HHHHHHHHHHHhCCChHHH--HHHHHHHHHHHH
Confidence 4778888888888887653111000 01000000 0125688888888877664 77776655444
Q ss_pred ---CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc----C--CcchH---HHHHHHHhccCCCHHHHHHHHHHHhcc
Q 021051 203 ---GGDEAVSAIIDSLGATSALLKHEVAYVLGQL----Q--NKAAS---AALSDVLRNVNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 203 ---~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~----~--~~~~~---~~L~~~l~~~~~~~~vr~~a~~aL~~~ 266 (318)
......+.+.+.+.+.++..|.+++..++.+ | ....+ +.+..++.|. |..||.+|+.++..+
T Consensus 161 ~v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 161 DVVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVAC 234 (266)
T ss_dssp HHHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 2234667788888888888888888777754 2 23456 7777777776 777777777776654
No 89
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=96.98 E-value=0.0039 Score=62.68 Aligned_cols=124 Identities=14% Similarity=0.138 Sum_probs=100.1
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccC-------CCHHHHHHHHHHHhccCCC---CcHHHHH
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKD-------SSNLLAHEAAFALGQMQDA---EAIPALE 86 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d-------~~~~vr~~a~~aL~~~~~~---~~~~~L~ 86 (318)
..+.|.+.+...+. ..+..++++||+++.+.+++.|.+++.. ....+|..|+++|.++... ...+.+.
T Consensus 441 i~~~l~~~~~~~~~--~~~~~~LkaLGN~g~p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~ 518 (1056)
T 1lsh_A 441 LHDLLSQSSDRAKE--EEIVLALKALGNAGQPNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVL 518 (1056)
T ss_dssp HHHHHHHHHHTTCH--HHHHHHHHHHHHHTCGGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCh--HHHHHHHHHhhccCChhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 44455566666654 8899999999999999999999998842 2467999999999988764 3678889
Q ss_pred HhhhcCCCCHHHHHHHHHHHHhc-CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 87 AVLNDFSLHPIVRHEAAEALGAI-GLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 87 ~~l~~~~~~~~vR~~a~~~L~~~-~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+++.|...++.+|..|+..|-.. +....+..+...+..|++..|+......|..+.
T Consensus 519 ~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla 575 (1056)
T 1lsh_A 519 PIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLRREPNLQVASFVYSQMRSLS 575 (1056)
T ss_dssp HHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhhCchHHHHHHHHHHHHHHH
Confidence 99976689999999999999875 445567778887778899999988888888776
No 90
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.011 Score=49.84 Aligned_cols=116 Identities=16% Similarity=0.163 Sum_probs=69.9
Q ss_pred HHHhhcCCCCCHHHHHHHHHHHhccCC---------------CChHHHHHHhccCCCHHHHHHHHHHHhccCCC------
Q 021051 21 LCDRLVDPTQPISERFRALFSLRNLKG---------------PGPRDALIRATKDSSNLLAHEAAFALGQMQDA------ 79 (318)
Q Consensus 21 L~~~L~~~~~~~~~r~~A~~~l~~~~~---------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~------ 79 (318)
|.+.|.|++ |..|..|+..+..... ......+.+.++|.+..+...++.++..+-..
T Consensus 14 l~e~l~sk~--WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKL--WKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSS--HHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCc--HHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 567788775 9999999998755321 12344566777888888888887777543210
Q ss_pred ----------CcHHHHHH-hhhcCCCCHHHHHHHHHHHHhcC-----CCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 80 ----------EAIPALEA-VLNDFSLHPIVRHEAAEALGAIG-----LESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 80 ----------~~~~~L~~-~l~~~~~~~~vR~~a~~~L~~~~-----~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
..++.|++ .+. +..+.+|..++.++..+. .....+.+.. ..++++|.+|..++..|.++
T Consensus 92 ~~~~~~~~~~~~l~~lveK~l~--~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~ 166 (278)
T 4ffb_C 92 KNAHNITLISTWTPLLVEKGLT--SSRATTKTQSMSCILSLCGLDTSITQSVELVIP-FFEKKLPKLIAAAANCVYEL 166 (278)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHhc--CccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH-HHhccCHHHHHHHHHHHHHH
Confidence 11233333 244 566777766666554321 1223455555 45677777777777666654
No 91
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.58 E-value=0.014 Score=54.53 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=76.4
Q ss_pred CChhHHHHHHHHhCCCCHHHHHHHHHHHhccC-------------CcchHHHHHHHHhccCCCHHHHHHHHHHHhccCC-
Q 021051 203 GGDEAVSAIIDSLGATSALLKHEVAYVLGQLQ-------------NKAASAALSDVLRNVNEHPMVRHEAAEALGSIAD- 268 (318)
Q Consensus 203 ~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~-------------~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~- 268 (318)
.+.+.++.|+.+|+..+..+|..+++.|..+. .+..++.|+.++.|. ...+|-+++..|..+..
T Consensus 119 ~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 119 KQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTT
T ss_pred cCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcC
Confidence 45678888999999999999999998888653 357889999999987 78999999999988853
Q ss_pred ----------hhhHHHHHHhhcCCC----HHHHHHHHHHHHhchhhhc
Q 021051 269 ----------DQSIGLLKEFAKDPE----PIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 269 ----------~~~~~~L~~~l~~~~----~~vr~~a~~aL~~l~~~~~ 302 (318)
.++++.|...+.++. ..|-.-|...|..+-..++
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~ 244 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNN 244 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCH
Confidence 246777777766543 3677777788887776664
No 92
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.49 E-value=0.0087 Score=49.91 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=81.8
Q ss_pred CCCCCHHHHHHHHHHHhccCC--------------CChHHHHHHhccCCCHHHHHHHHHHHhccC----CCCcHHHHHHh
Q 021051 27 DPTQPISERFRALFSLRNLKG--------------PGPRDALIRATKDSSNLLAHEAAFALGQMQ----DAEAIPALEAV 88 (318)
Q Consensus 27 ~~~~~~~~r~~A~~~l~~~~~--------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~----~~~~~~~L~~~ 88 (318)
+++. .+-..++..+..+-+ ...+|.|+.-++|....+|..+-..+..+. .....+.+.+.
T Consensus 98 d~N~--~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g 175 (266)
T 2of3_A 98 ETNP--AALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDA 175 (266)
T ss_dssp SCCH--HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHG
T ss_pred CCCH--HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 6654 677777776655311 135688888889999999988776654432 22367888888
Q ss_pred hhcCCCCHHHHHHHHHHHHhc----C--CCCcH---HHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 89 LNDFSLHPIVRHEAAEALGAI----G--LESNI---PLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 89 l~~~~~~~~vR~~a~~~L~~~----~--~~~~~---~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
++ +.++.+|.+++..++.+ | ....+ +.+.+ +.+|+|..||.+|..++..+
T Consensus 176 ~k--sKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~-ll~D~d~~VR~aAl~~lve~ 234 (266)
T 2of3_A 176 LK--SKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAP-FVGDKDVNVRNAAINVLVAC 234 (266)
T ss_dssp GG--CSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGG-GGGCSSHHHHHHHHHHHHHH
T ss_pred Hc--cCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 88 89999999999888753 3 34567 88888 77899999999999998865
No 93
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.40 E-value=0.027 Score=56.13 Aligned_cols=212 Identities=8% Similarity=0.007 Sum_probs=112.9
Q ss_pred HHHHHHHHHHhccCC---CCcHHHHHHh----hh----cCCCCHHHHHHHHHHHHhcCC---------C------CcHHH
Q 021051 64 LLAHEAAFALGQMQD---AEAIPALEAV----LN----DFSLHPIVRHEAAEALGAIGL---------E------SNIPL 117 (318)
Q Consensus 64 ~vr~~a~~aL~~~~~---~~~~~~L~~~----l~----~~~~~~~vR~~a~~~L~~~~~---------~------~~~~~ 117 (318)
..|..|...|..+.. ...++.+.+. +. +.+++|..|.+|+.+++.+.. . +..+.
T Consensus 376 s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~ 455 (960)
T 1wa5_C 376 TRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF 455 (960)
T ss_dssp CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH
T ss_pred CcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH
Confidence 356677666654332 2344444443 33 115679999999998887621 1 23333
Q ss_pred HHhh---hccCC---CHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHH
Q 021051 118 LKNS---LVSDP---AQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYE 191 (318)
Q Consensus 118 L~~~---l~~d~---~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 191 (318)
+.+. ...++ +|.||..++++++++.+|.+. . .+ ...++.++..+.+++. .|
T Consensus 456 l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~--~---~l----------------~~~l~~l~~~L~d~~~--~V 512 (960)
T 1wa5_C 456 FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK--A---QL----------------IELMPILATFLQTDEY--VV 512 (960)
T ss_dssp HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH--H---HH----------------HHHHHHHHHHTTCSCH--HH
T ss_pred HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH--H---HH----------------HHHHHHHHHHhCCCCh--hH
Confidence 3321 23566 999999999999999844210 0 00 2246677777776654 46
Q ss_pred HHHHHHHHHhCCC---------------------hhHHHHHHHHhCCCC---HH--HHHHHHHHHhc----cCC---c--
Q 021051 192 RYAALFALRNHGG---------------------DEAVSAIIDSLGATS---AL--LKHEVAYVLGQ----LQN---K-- 236 (318)
Q Consensus 192 r~~a~~~L~~~~~---------------------~~~~~~l~~~l~d~~---~~--vr~~a~~~L~~----~~~---~-- 236 (318)
|..|+.++.++.. +..+..|..+++... .. ....+..+++. +++ +
T Consensus 513 ~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~ 592 (960)
T 1wa5_C 513 YTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF 592 (960)
T ss_dssp HHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH
T ss_pred HHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999988432 122333444444420 11 11233334433 222 1
Q ss_pred -chHHHHHHHHhc---cCCCHHHHHHHHHHHhccC---Ch--------hhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 237 -AASAALSDVLRN---VNEHPMVRHEAAEALGSIA---DD--------QSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 237 -~~~~~L~~~l~~---~~~~~~vr~~a~~aL~~~~---~~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
..++.|...+.. .++++.++...+++++.+. .+ ...+.+...+..........+...+..+.
T Consensus 593 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 593 PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 233444444432 2347888877788777663 22 34566666555443344444555554443
No 94
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=96.28 E-value=0.029 Score=55.88 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHhccCC---CChHHHHHH----hcc------CCCHHHHHHHHHHHhccCC---------C------CcHH
Q 021051 32 ISERFRALFSLRNLKG---PGPRDALIR----ATK------DSSNLLAHEAAFALGQMQD---------A------EAIP 83 (318)
Q Consensus 32 ~~~r~~A~~~l~~~~~---~~~~~~L~~----~l~------d~~~~vr~~a~~aL~~~~~---------~------~~~~ 83 (318)
+..|..|...+..+.. ....+.+.. .+. ++++..|.+|+.++|.+.. . ...+
T Consensus 375 ~s~R~aa~~~L~~l~~~~~~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~ 454 (960)
T 1wa5_C 375 DTRRRACTDFLKELKEKNEVLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVD 454 (960)
T ss_dssp -CHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHH
T ss_pred cCcHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHH
Confidence 3577777777765533 234433333 344 6788999999998887631 1 2233
Q ss_pred H----HHHhhhcCCC---CHHHHHHHHHHHHhcCCC-------CcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 84 A----LEAVLNDFSL---HPIVRHEAAEALGAIGLE-------SNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 84 ~----L~~~l~~~~~---~~~vR~~a~~~L~~~~~~-------~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
. +...+. ++ ++.+|..|+.+++++... ..++.+.. .+.|+++.||..|+.++.++.
T Consensus 455 ~l~~~v~p~l~--~~~~~~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~-~L~d~~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 455 FFTKEIAPDLT--SNNIPHIILRVDAIKYIYTFRNQLTKAQLIELMPILAT-FLQTDEYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHTHHHHH--CSSCSCHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHhc--CCCCCCceehHHHHHHHHHHHhhCCHHHHHHHHHHHHH-HhCCCChhHHHHHHHHHHHHH
Confidence 3 344456 55 899999999999988532 23455666 346889999999999999876
No 95
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.99 E-value=0.17 Score=50.55 Aligned_cols=107 Identities=19% Similarity=0.042 Sum_probs=71.3
Q ss_pred HHHHHhCCChhHHH----HHHHH----hC---CCCHHHHHHHHHHHhccCCc----------------chHHHHHHHHh-
Q 021051 196 LFALRNHGGDEAVS----AIIDS----LG---ATSALLKHEVAYVLGQLQNK----------------AASAALSDVLR- 247 (318)
Q Consensus 196 ~~~L~~~~~~~~~~----~l~~~----l~---d~~~~vr~~a~~~L~~~~~~----------------~~~~~L~~~l~- 247 (318)
.+.+..++....+. .+... +. +.+|..+..++.+|+.+++. ...+.|..++.
T Consensus 422 ~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s 501 (980)
T 3ibv_A 422 QDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTS 501 (980)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHS
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhC
Confidence 34455556555555 44433 31 34688889999998876542 24455555554
Q ss_pred ----ccCCCHHHHHHHHHHHhccC-----ChhhHHHHHH------hhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 248 ----NVNEHPMVRHEAAEALGSIA-----DDQSIGLLKE------FAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 248 ----~~~~~~~vr~~a~~aL~~~~-----~~~~~~~L~~------~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++ +|.||..+++.+|++. .++.++.+.. .+.++++.|+..|+.++.++-.....+
T Consensus 502 ~i~~~~--hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~ 571 (980)
T 3ibv_A 502 QVCRHP--HPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQ 571 (980)
T ss_dssp STTTCC--CHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTT
T ss_pred CCCCCC--CHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHH
Confidence 44 8999999999999986 3444554444 333577889999999999987666544
No 96
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=95.61 E-value=0.31 Score=39.38 Aligned_cols=130 Identities=9% Similarity=-0.068 Sum_probs=86.9
Q ss_pred HHHHHHHcCCCcChHHHHHHHHHHHhCC---ChhHHHHHHHHhC-CCCHHHHHHHHHHHhcc--CCcc-hHHHHHHHHhc
Q 021051 176 DMLREVLLGEEKGMYERYAALFALRNHG---GDEAVSAIIDSLG-ATSALLKHEVAYVLGQL--QNKA-ASAALSDVLRN 248 (318)
Q Consensus 176 ~~L~~~l~~~~~~~~~r~~a~~~L~~~~---~~~~~~~l~~~l~-d~~~~vr~~a~~~L~~~--~~~~-~~~~L~~~l~~ 248 (318)
..+..+..++..+ .|..|+..++... ..+.++.+...+. .++|.+.-..+.+++.+ +.+. ..+.+...+.+
T Consensus 58 ~~~~~L~~s~~~E--~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~s 135 (220)
T 2b6c_A 58 QEIEAYYQKTERE--YQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYGA 135 (220)
T ss_dssp HHHHHHHTSSSHH--HHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTTC
T ss_pred HHHHHHHcCchhH--HHHHHHHHHHHHHhhCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHHHHHHHHHHcC
Confidence 3344444444444 4999999998664 4455555555554 55777776655556654 2344 56778887777
Q ss_pred cCCCHHHHHHHHHHHhccCC---h-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhcc
Q 021051 249 VNEHPMVRHEAAEALGSIAD---D-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEYL 309 (318)
Q Consensus 249 ~~~~~~vr~~a~~aL~~~~~---~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~~ 309 (318)
+ +..+|+.|+.++..... + ..++.+...+.|++.+|+.++.|+|..+.......-..|+
T Consensus 136 ~--~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~~~~~v~~fl 198 (220)
T 2b6c_A 136 E--NFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTNPQWVEELM 198 (220)
T ss_dssp S--SHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred C--CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 6 88899888887655432 2 2455555578899999999999999999887665434443
No 97
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=95.36 E-value=0.63 Score=37.84 Aligned_cols=124 Identities=11% Similarity=0.072 Sum_probs=82.8
Q ss_pred HHHHHHcCCCcChHHHHHHHHHHHhCC---ChhHHHHHHHHh-CCCCHHHHHHH-HHHHhcc--CCcc-hHHHHHHHHhc
Q 021051 177 MLREVLLGEEKGMYERYAALFALRNHG---GDEAVSAIIDSL-GATSALLKHEV-AYVLGQL--QNKA-ASAALSDVLRN 248 (318)
Q Consensus 177 ~L~~~l~~~~~~~~~r~~a~~~L~~~~---~~~~~~~l~~~l-~d~~~~vr~~a-~~~L~~~--~~~~-~~~~L~~~l~~ 248 (318)
.+..+..++..+ .|..|+..+.... +.+.++.+...+ ..++|.+.-.. ..++|.+ +++. ..+.+...+.+
T Consensus 65 ~~~~L~~~~~~E--~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~~l~~W~~s 142 (232)
T 3jxy_A 65 IIRELWDLPERE--FQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIAS 142 (232)
T ss_dssp HHHHHHTSSBHH--HHHHHHHHHHHTGGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGGTHHHHHHS
T ss_pred HHHHHhcCcHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHHHHHHHHhcC
Confidence 444444444433 5888888887542 345666666655 45677776544 2444443 2444 66888888887
Q ss_pred cCCCHHHHHHHHHHHhccC---Ch-hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 249 VNEHPMVRHEAAEALGSIA---DD-QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 249 ~~~~~~vr~~a~~aL~~~~---~~-~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+ ++.+|+.|+..+.... +. ...+.+...+.+++.+|+.++.|+|..+.......
T Consensus 143 ~--~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p~~ 200 (232)
T 3jxy_A 143 D--NIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNPDV 200 (232)
T ss_dssp S--CHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCHHH
T ss_pred C--chHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCHHH
Confidence 6 8888888888765443 22 24555666788999999999999999998876544
No 98
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=94.81 E-value=0.13 Score=49.12 Aligned_cols=55 Identities=22% Similarity=0.177 Sum_probs=37.0
Q ss_pred HHHhhhcCCCCHHHHHHHHHHHHhcCC----------CCcHHH-HHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 85 LEAVLNDFSLHPIVRHEAAEALGAIGL----------ESNIPL-LKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 85 L~~~l~~~~~~~~vR~~a~~~L~~~~~----------~~~~~~-L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+++.|+ ++++..|.+|+.+|+.+.. .+.+.. +.. ++.|++..||..|+.+|+++.
T Consensus 39 ll~~L~--S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~-lL~D~~~~Vr~~A~gaLrnL~ 104 (684)
T 4gmo_A 39 VLKDLK--SPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTE-TLTDNNIDSRAAGWEILKVLA 104 (684)
T ss_dssp HHHHHS--SSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHT-TTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHcC--CCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHH-HcCCCCHHHHHHHHHHHHHHH
Confidence 444455 5666666666666666542 234444 444 678999999999999998886
No 99
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.78 E-value=0.14 Score=51.20 Aligned_cols=111 Identities=13% Similarity=0.074 Sum_probs=77.7
Q ss_pred HHHHHHHhCCChhHHHHHHHH----hCC--CCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccC---CCH
Q 021051 194 AALFALRNHGGDEAVSAIIDS----LGA--TSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVN---EHP 253 (318)
Q Consensus 194 ~a~~~L~~~~~~~~~~~l~~~----l~d--~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~---~~~ 253 (318)
..+..+..+...+.++.+... +.+ .+|..+.+++.++|.+.+ +.+++.|+.+..+.. ...
T Consensus 435 d~L~~l~~l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~ 514 (1023)
T 4hat_C 435 EVLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKA 514 (1023)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchH
Confidence 445555555555565555443 333 689999999999999753 245677777775310 145
Q ss_pred HHHHHHHHHHhccCC-----h----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 254 MVRHEAAEALGSIAD-----D----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 254 ~vr~~a~~aL~~~~~-----~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
.||..+++.+|++.+ + ..+..|.+.+.++++.|...|++|+..+-.....+
T Consensus 515 ~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~ 574 (1023)
T 4hat_C 515 VVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1023)
T ss_dssp HHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 677788899999863 3 35666666677888999999999999998877655
No 100
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.19 E-value=2 Score=42.49 Aligned_cols=123 Identities=15% Similarity=0.198 Sum_probs=79.3
Q ss_pred cCCCHHHHHHHHHHHhccCCC------CcHHHHHHhhhc-CCCCHHHHHHHHHHHHhcCC---------CCcHHHHHhhh
Q 021051 59 KDSSNLLAHEAAFALGQMQDA------EAIPALEAVLND-FSLHPIVRHEAAEALGAIGL---------ESNIPLLKNSL 122 (318)
Q Consensus 59 ~d~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~~-~~~~~~vR~~a~~~L~~~~~---------~~~~~~L~~~l 122 (318)
.+.++..+.++++++|.+... ..++.+.+.+.. .++++.+|..++.+++++.. +..++.|...+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 538 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHAL 538 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 567899999999999987642 345666655531 14678999999999997642 34566666634
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051 123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH 202 (318)
Q Consensus 123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~ 202 (318)
++ +.|+..|+.++.++.+ .....+.. + -+..+..|...+..++.+...+..++.+++.+
T Consensus 539 -~~--~~V~~~A~~al~~l~~--~~~~~l~p------~----------~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i 597 (963)
T 2x19_B 539 -GN--PELSVSSVSTLKKICR--ECKYDLPP------Y----------AANIVAVSQDVLMKQIHKTSQCMWLMQALGFL 597 (963)
T ss_dssp -TC--GGGHHHHHHHHHHHHH--HTGGGCTT------T----------HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred -CC--chHHHHHHHHHHHHHH--HHHHHHHh------h----------HHHHHHHHHHHhccCCCChHHHHHHHHHHHHH
Confidence 44 7899999999999872 11110000 0 02244555666665444444687777777765
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.78 E-value=0.9 Score=45.11 Aligned_cols=116 Identities=14% Similarity=0.122 Sum_probs=74.9
Q ss_pred CCHHHHHHHHHHHHhcCCC------CcHHHHHhh---hc-cCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCccc
Q 021051 94 LHPIVRHEAAEALGAIGLE------SNIPLLKNS---LV-SDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSV 163 (318)
Q Consensus 94 ~~~~vR~~a~~~L~~~~~~------~~~~~L~~~---l~-~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (318)
.+|..|.+++.+++.++.. ..++.+... +. +|+++.||..++++++++..|...... .+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~---~l-------- 544 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA---YI-------- 544 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------CH--------
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH---HH--------
Confidence 6899999999999998631 233444432 22 256999999999999999866543211 00
Q ss_pred CCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCCh----------hHHHHHHHHhCC--CCHHHHHHHHHHHh
Q 021051 164 DPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGD----------EAVSAIIDSLGA--TSALLKHEVAYVLG 231 (318)
Q Consensus 164 ~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~----------~~~~~l~~~l~d--~~~~vr~~a~~~L~ 231 (318)
+..++.|+..+ + +.+ +..|..++.++... ..+..+.+++.. .+...+..+..+++
T Consensus 545 --------~~vl~~l~~~l-~--~~v--~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~ 611 (971)
T 2x1g_F 545 --------PPAINLLVRGL-N--SSM--SAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIG 611 (971)
T ss_dssp --------HHHHHHHHHHH-H--SSC--HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHh-C--hHH--HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 23567777777 3 444 88888888877531 222333344444 35778888888887
Q ss_pred cc
Q 021051 232 QL 233 (318)
Q Consensus 232 ~~ 233 (318)
.+
T Consensus 612 ~i 613 (971)
T 2x1g_F 612 KL 613 (971)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 102
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.35 E-value=0.36 Score=47.98 Aligned_cols=120 Identities=14% Similarity=0.161 Sum_probs=74.8
Q ss_pred CCHHHHHHHHHHHhccCCC------CcHHHHHHhhhc---CCCCHHHHHHHHHHHHhcC-----CCCc----HHHHHhhh
Q 021051 61 SSNLLAHEAAFALGQMQDA------EAIPALEAVLND---FSLHPIVRHEAAEALGAIG-----LESN----IPLLKNSL 122 (318)
Q Consensus 61 ~~~~vr~~a~~aL~~~~~~------~~~~~L~~~l~~---~~~~~~vR~~a~~~L~~~~-----~~~~----~~~L~~~l 122 (318)
.++..+.+++.++|.+... ..++.+.+++.. .++++.||..++.+++++. .+.. ++.|...+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l 555 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL 555 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 6788999999999998742 344555555421 1458999999999999864 2333 34455534
Q ss_pred ccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051 123 VSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH 202 (318)
Q Consensus 123 ~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~ 202 (318)
+ +.|+..|+.++.++.+ .....+...+ +.....+...+..++.+...+..++.+++.+
T Consensus 556 --~--~~v~~~A~~al~~l~~--~~~~~l~p~~----------------~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i 613 (971)
T 2x1g_F 556 --N--SSMSAQATLGLKELCR--DCQLQLKPYA----------------DPLLNACHASLNTGRMKNSDSVRLMFSIGKL 613 (971)
T ss_dssp --H--SSCHHHHHHHHHHHHH--HCHHHHHHHH----------------HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred --C--hHHHHHHHHHHHHHHH--HHHHhccccH----------------HHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence 3 6799999999998871 1111000000 1234556666666544445677777777765
No 103
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=93.27 E-value=0.37 Score=46.07 Aligned_cols=126 Identities=16% Similarity=0.033 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhCCCh----------hHHHH-HHHHhCCCCHHHHHHHHHHHhccCC--------
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNHGGD----------EAVSA-IIDSLGATSALLKHEVAYVLGQLQN-------- 235 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~----------~~~~~-l~~~l~d~~~~vr~~a~~~L~~~~~-------- 235 (318)
+..+++.|.++++.. |..|+.+|+++... ..+.. |..++.|++..||.+|+.+|+.+..
T Consensus 36 i~Pll~~L~S~~~~~--r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 36 ILPVLKDLKSPDAKS--RTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp THHHHHHHSSSCCSH--HHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCHHH--HHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 334666788988886 99999999998542 34443 4567899999999999999988742
Q ss_pred ----cchHHHHHHHHhccC------------CCH-------HHHH---HHHHHHhccC--------ChhhHHHHHHhhc-
Q 021051 236 ----KAASAALSDVLRNVN------------EHP-------MVRH---EAAEALGSIA--------DDQSIGLLKEFAK- 280 (318)
Q Consensus 236 ----~~~~~~L~~~l~~~~------------~~~-------~vr~---~a~~aL~~~~--------~~~~~~~L~~~l~- 280 (318)
.++++.|..++.... ... .+-. .++++|+... ..+.++.|+..+.
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 235677777764310 000 1111 2333333322 2345666776542
Q ss_pred -C-CCHHHHHHHHHHHHhchhhhc
Q 021051 281 -D-PEPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 281 -~-~~~~vr~~a~~aL~~l~~~~~ 302 (318)
+ ....++..|...|..+...+.
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~ 217 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNL 217 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCH
Confidence 2 356899999999988877654
No 104
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=93.26 E-value=2.4 Score=41.95 Aligned_cols=186 Identities=14% Similarity=-0.027 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHhcC-CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHh--hhccCccccccccCCCCcccCCCCCC
Q 021051 93 SLHPIVRHEAAEALGAIG-LESNIPLLKNSLVSDPAQEVRETCELALERIEK--LKASGSDGSSMTERSPFMSVDPAAPA 169 (318)
Q Consensus 93 ~~~~~vR~~a~~~L~~~~-~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (318)
++++..|..|-..|..+. .++....+...+.++.++.+|..|+..|.+.-. |..-....
T Consensus 36 ~~~~~~r~~A~~~L~~~~~~p~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~------------------ 97 (963)
T 2x19_B 36 DPNIENKNLAQKWLMQAQVSPQAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQ------------------ 97 (963)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGG------------------
T ss_pred CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHH------------------
Confidence 456677777777666553 345555555544445567777777777765431 21100000
Q ss_pred CCCccHHHHHHHHcC-CCcChHHHHHHHHHHHhC-------CChhHHHHHHHHhCC-----CCHHHHHHHHHHHhccCC-
Q 021051 170 SSCSSVDMLREVLLG-EEKGMYERYAALFALRNH-------GGDEAVSAIIDSLGA-----TSALLKHEVAYVLGQLQN- 235 (318)
Q Consensus 170 ~~~~~~~~L~~~l~~-~~~~~~~r~~a~~~L~~~-------~~~~~~~~l~~~l~d-----~~~~vr~~a~~~L~~~~~- 235 (318)
....-..|+..+.+ .+.+..+|.....++..+ ..++.++.+...+++ +++..+..++..|..+.+
T Consensus 98 -~~~ir~~ll~~l~~~~~~~~~ir~kl~~~la~i~~~~~p~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee 176 (963)
T 2x19_B 98 -YESLKAQLFTQITRFASGSKIVLTRLCVALASLALSMMPDAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEE 176 (963)
T ss_dssp -HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHH
Confidence 00112233444332 111234576666665543 345777888887765 244455555544432211
Q ss_pred ----------------------cchHHHHHHHHhccCCCHHHHHHHHHHHhcc---CC-----hhhHHHHHHhhcCCCHH
Q 021051 236 ----------------------KAASAALSDVLRNVNEHPMVRHEAAEALGSI---AD-----DQSIGLLKEFAKDPEPI 285 (318)
Q Consensus 236 ----------------------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~---~~-----~~~~~~L~~~l~~~~~~ 285 (318)
+...+.+...+.+..++..++..+++++... +. ...++.+.+.+. ++.
T Consensus 177 ~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~--~~~ 254 (963)
T 2x19_B 177 FQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQ--DSE 254 (963)
T ss_dssp HTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTT--STT
T ss_pred HhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhC--Cch
Confidence 1233444555544332334777788777532 21 445666666664 455
Q ss_pred HHHHHHHHHHhchh
Q 021051 286 VSQSCEVALSMLEY 299 (318)
Q Consensus 286 vr~~a~~aL~~l~~ 299 (318)
++..|+.++..+-.
T Consensus 255 ~~~~a~~~l~~i~~ 268 (963)
T 2x19_B 255 LFDSSVEAIVNAIS 268 (963)
T ss_dssp THHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 67777777776654
No 105
>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17
Probab=93.22 E-value=0.93 Score=36.51 Aligned_cols=120 Identities=6% Similarity=-0.158 Sum_probs=77.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCC---CChHHHHHHhcc-CCCHHHHHHHHHHHhccC--CC-CcHHHHHHhhhc
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKG---PGPRDALIRATK-DSSNLLAHEAAFALGQMQ--DA-EAIPALEAVLND 91 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~---~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--~~-~~~~~L~~~l~~ 91 (318)
+.+.++..++.. +.|..|+..++.... ++..+.+..++. -+++.+-...+.+++.+- .+ ...+.+.+.+.
T Consensus 58 ~~~~~L~~s~~~--E~r~la~~~l~~~~~~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~~~~~~~i~~W~~- 134 (220)
T 2b6c_A 58 QEIEAYYQKTER--EYQYVAIDLALQNVQRFSLEEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHLTELPTIFALFYG- 134 (220)
T ss_dssp HHHHHHHTSSSH--HHHHHHHHHHHHTGGGCCHHHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSGGGHHHHHHHHTT-
T ss_pred HHHHHHHcCchh--HHHHHHHHHHHHHHhhCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHChHHHHHHHHHHHc-
Confidence 445555666665 899999999986642 233333455554 345666665545454431 22 34567788888
Q ss_pred CCCCHHHHHHHHHHHHhcCC---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 92 FSLHPIVRHEAAEALGAIGL---ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 92 ~~~~~~vR~~a~~~L~~~~~---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+++..+|+.|+.++-.... ++.+-.+...+..|++..|+++..++|..++
T Consensus 135 -s~~~w~rR~ai~~~l~~~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~ 187 (220)
T 2b6c_A 135 -AENFWNRRVALNLQLMLKEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYS 187 (220)
T ss_dssp -CSSHHHHHHHHHTTTTCGGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 8999999999886643322 2222223333668999999999999999887
No 106
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.69 E-value=0.27 Score=44.10 Aligned_cols=33 Identities=18% Similarity=0.015 Sum_probs=15.8
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG 47 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~ 47 (318)
+.++++..+.++..|.+. .+|..|++.|..++.
T Consensus 62 l~~~Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck 94 (507)
T 3u0r_A 62 LADSAINAQLDLCEDEDV--SIRRQAIKELPQFAT 94 (507)
T ss_dssp GHHHHHHHHHHHHTCSSH--HHHHHHHHHGGGGCC
T ss_pred hHHHHHHHHHHHHhcccH--HHHHHHHHhhHHHhh
Confidence 344444445555554443 455555555544443
No 107
>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*
Probab=91.93 E-value=1.5 Score=35.55 Aligned_cols=120 Identities=13% Similarity=-0.045 Sum_probs=68.8
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccC---CCChHHHHHHhcc-CCCHHHHHHH-HHHHhccC--CCC-cHHHHHHhhh
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLK---GPGPRDALIRATK-DSSNLLAHEA-AFALGQMQ--DAE-AIPALEAVLN 90 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~---~~~~~~~L~~~l~-d~~~~vr~~a-~~aL~~~~--~~~-~~~~L~~~l~ 90 (318)
+.+.++..++.. +.|..|+..+.... .++..+.+..++. .+++.+-... ...+|.+- .+. ..+.+.+.+.
T Consensus 64 ~~~~~L~~~~~~--E~r~~ai~~l~~~~k~~~~~~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~p~~~~~~l~~W~~ 141 (232)
T 3jxy_A 64 IIIRELWDLPER--EFQAAALDIMQKYKKHINETHIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKHPELISAYIPKWIA 141 (232)
T ss_dssp HHHHHHHTSSBH--HHHHHHHHHHHHTGGGCCGGGHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHCGGGGGGTHHHHHH
T ss_pred HHHHHHhcCcHH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHccCCChHHHHHhhHHHHHHHHHHCHHHHHHHHHHHhc
Confidence 345555555554 78888888776432 3345555656553 3455554333 23333221 223 5567777777
Q ss_pred cCCCCHHHHHHHHHHHHhcC---CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 91 DFSLHPIVRHEAAEALGAIG---LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 91 ~~~~~~~vR~~a~~~L~~~~---~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
++++.+|+.|+..+-... ++...-.+...+..|++..|+++..++|..++
T Consensus 142 --s~~~w~rR~ai~~~l~~~~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~ 194 (232)
T 3jxy_A 142 --SDNIWLQRAAILFQLKYKQKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYA 194 (232)
T ss_dssp --SSCHHHHHHHHHTTTTCGGGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred --CCchHHHHHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 788888887776653222 11122222333567888888888888888776
No 108
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.82 E-value=0.19 Score=50.28 Aligned_cols=122 Identities=16% Similarity=0.117 Sum_probs=78.5
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCCC-----------ChHHHHHHhcc-----CCCHHHHHHHHHHHhccCC----
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKGP-----------GPRDALIRATK-----DSSNLLAHEAAFALGQMQD---- 78 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~-----------~~~~~L~~~l~-----d~~~~vr~~a~~aL~~~~~---- 78 (318)
+.+.+.+.+++.+|..|..++.++|.+.+. .+++.|..+.. |+...+|..++|.+|++..
T Consensus 454 ~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~ 533 (1023)
T 4hat_C 454 SKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKA 533 (1023)
T ss_dssp HHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhc
Confidence 444555566556799999999999997541 23444555544 2445677889999998752
Q ss_pred -C----CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------------CCcHHHHHhh---hccCCCHHHHHHHHH
Q 021051 79 -A----EAIPALEAVLNDFSLHPIVRHEAAEALGAIGL--------------ESNIPLLKNS---LVSDPAQEVRETCEL 136 (318)
Q Consensus 79 -~----~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~--------------~~~~~~L~~~---l~~d~~~~vr~~a~~ 136 (318)
+ ..+..|.+.+. ++++.|...|+.++.++.. +..++.+... ....-++.-+..+..
T Consensus 534 ~~~~L~~vl~~L~~~l~--~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lye 611 (1023)
T 4hat_C 534 HWNFLRTVILKLFEFMH--ETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYK 611 (1023)
T ss_dssp CHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 2 33455555555 6789999999999877542 1133333221 223456777778888
Q ss_pred HHHHHH
Q 021051 137 ALERIE 142 (318)
Q Consensus 137 aL~~~~ 142 (318)
+++.+-
T Consensus 612 ai~~vi 617 (1023)
T 4hat_C 612 ACGIII 617 (1023)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888765
No 109
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.70 E-value=0.95 Score=39.71 Aligned_cols=65 Identities=15% Similarity=0.123 Sum_probs=33.8
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccC--Ch----hhHHHHHHhhcC-C-------CHHHHHHHHHHHHhchhhhc
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIA--DD----QSIGLLKEFAKD-P-------EPIVSQSCEVALSMLEYEQL 302 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~--~~----~~~~~L~~~l~~-~-------~~~vr~~a~~aL~~l~~~~~ 302 (318)
.+..|+..+..+.-++..-.+.+.+|+.+. .| ..++.|..+-.. + ...|++.....|-.+-.+.+
T Consensus 226 lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtLR~~Ll~lLK~p~ 304 (386)
T 3o2t_A 226 ALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPA 304 (386)
T ss_dssp HHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHCC----CGGGHHHHHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456777777654334545556777777764 22 345555543211 1 13466666666665544433
No 110
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=91.22 E-value=2.4 Score=38.14 Aligned_cols=104 Identities=17% Similarity=0.123 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhCC------ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC----cchHHHHHHHHhccCCCHHHHH--
Q 021051 190 YERYAALFALRNHG------GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN----KAASAALSDVLRNVNEHPMVRH-- 257 (318)
Q Consensus 190 ~~r~~a~~~L~~~~------~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~----~~~~~~L~~~l~~~~~~~~vr~-- 257 (318)
.++.-|.+.+.++= ..+++..+..+..|.+..||..|+..|..++. +...++|.+++... ++....
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~~~i~kiaDvL~QlLqtd--d~~E~~~V 120 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGENLPRVADILTQLLQTD--DSAEFNLV 120 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCTTCHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhhhhhhhHHHHHHHHHhcc--chHHHHHH
Confidence 45777878887662 25788889999999999999999999999875 34677888888754 554443
Q ss_pred -HHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHH
Q 021051 258 -EAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALS 295 (318)
Q Consensus 258 -~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~ 295 (318)
.++..|-.+.....+..|...+...++.+|..++.-|.
T Consensus 121 ~~sL~sllk~Dpk~tl~~lf~~i~~~~e~~Rer~lkFi~ 159 (507)
T 3u0r_A 121 NNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLS 159 (507)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence 44444555555556777776555567788877777764
No 111
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=91.16 E-value=1.5 Score=36.17 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=37.3
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC------CCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGL------ESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~------~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
.++.++++.. +++..+|++.+..+...+. +..++.|.. +.+|+++.|.+.++.+...+
T Consensus 54 ~l~~il~~~~--~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~-Ll~d~d~~V~K~~I~~~~~i 117 (257)
T 3gs3_A 54 FLESVLSLAH--DSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSM-LLRDNSAQVIKRVIQACGSI 117 (257)
T ss_dssp HHHHHHGGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHH
Confidence 4455555544 6777777777777765542 124555666 55677888888888777744
No 112
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=90.29 E-value=1.2 Score=44.67 Aligned_cols=110 Identities=12% Similarity=0.070 Sum_probs=71.8
Q ss_pred HHHHHHhCCChhHHHHHHHH----hC--CCCHHHHHHHHHHHhccCCc-------chHHHHHHHHhc-------cCCCHH
Q 021051 195 ALFALRNHGGDEAVSAIIDS----LG--ATSALLKHEVAYVLGQLQNK-------AASAALSDVLRN-------VNEHPM 254 (318)
Q Consensus 195 a~~~L~~~~~~~~~~~l~~~----l~--d~~~~vr~~a~~~L~~~~~~-------~~~~~L~~~l~~-------~~~~~~ 254 (318)
.+..+..++....++.+.+. +. ..+|..+..++.++|.+.+. ..++.++..+.. ...++.
T Consensus 436 ~L~~l~~~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~ 515 (1049)
T 3m1i_C 436 VLVYLTHLNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAV 515 (1049)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHH
Confidence 34444455555555554443 33 46899999999999988541 124444444321 001566
Q ss_pred HHHHHHHHHhccC-----Ch----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 255 VRHEAAEALGSIA-----DD----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 255 vr~~a~~aL~~~~-----~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
+|..+++.+|++. .+ ..++.|...+.++++.|+..|+.|+.++-.....+
T Consensus 516 v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~ 574 (1049)
T 3m1i_C 516 VASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYH 574 (1049)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7767999999775 22 34566666778889999999999999998765544
No 113
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=89.63 E-value=8.2 Score=38.81 Aligned_cols=126 Identities=9% Similarity=-0.028 Sum_probs=77.8
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHHhcc-CCCHHHHHHHHHHHhccC--------CC---
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIRATK-DSSNLLAHEAAFALGQMQ--------DA--- 79 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~~l~-d~~~~vr~~a~~aL~~~~--------~~--- 79 (318)
++-..++.++..+.++++ ..|..|-..|..+.. +++...+..+|. +.++.+|..|+..|...- ..
T Consensus 25 ~Dv~~Le~lv~~ly~p~~--~~r~qA~~~L~q~q~sp~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~ 102 (1073)
T 3gjx_A 25 LDINLLDNVVNCLYHGEG--AQQRMAQEVLTHLKEHPDAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCE 102 (1073)
T ss_dssp CSHHHHHHHHHTTTCSSH--HHHHHHHHHHHTSSCCSCHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHH
T ss_pred CCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHHcCchHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHH
Confidence 455688888888888876 789999999988864 677776667664 458999999999885421 00
Q ss_pred CcHHHHHHhhhc---C----CCCHHHHHHHHHHHHhc-------CCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 80 EAIPALEAVLND---F----SLHPIVRHEAAEALGAI-------GLESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 80 ~~~~~L~~~l~~---~----~~~~~vR~~a~~~L~~~-------~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
..-..|++++.. . ..++.++.....+++.+ ..++.++.+...+ + .++..+......|..+.
T Consensus 103 ~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~Wp~fi~dLv~~~-~-~~~~~~~~~L~IL~~L~ 177 (1073)
T 3gjx_A 103 GIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHWPTFISDIVGAS-R-TSESLCQNNMVILKLLS 177 (1073)
T ss_dssp HHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH-H-HCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhccHHHHHHHHHh-C-CCHHHHHHHHHHHHHHH
Confidence 112333444331 0 13466666666666543 2456677777733 2 23445555555555554
No 114
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=88.01 E-value=3.8 Score=41.14 Aligned_cols=92 Identities=17% Similarity=0.110 Sum_probs=50.4
Q ss_pred ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCC--------------------------cchHHHHHHHHhccCCCHHHHH
Q 021051 204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQN--------------------------KAASAALSDVLRNVNEHPMVRH 257 (318)
Q Consensus 204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~--------------------------~~~~~~L~~~l~~~~~~~~vr~ 257 (318)
.++.++.+...++ .++..+..++.+|..+.. +...+.+...+.+. .++.++.
T Consensus 136 Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~-~~~~~~~ 213 (1049)
T 3m1i_C 136 WPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQG-SSSSLIV 213 (1049)
T ss_dssp CTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred chHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHH
Confidence 4567777777775 444444444444443221 11233344455543 3678999
Q ss_pred HHHHHHhccC---------ChhhHHHHHH-hhcCCCHHHHHHHHHHHHhchh
Q 021051 258 EAAEALGSIA---------DDQSIGLLKE-FAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 258 ~a~~aL~~~~---------~~~~~~~L~~-~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
.+++++..+- .+..++.+.+ ++ .++.+|..|+..|..+-.
T Consensus 214 ~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~ 263 (1049)
T 3m1i_C 214 ATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSN 263 (1049)
T ss_dssp HHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHh
Confidence 9999886531 1223444442 33 267778777777766543
No 115
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=87.48 E-value=5.9 Score=34.71 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcc---CCC----ChHHHHHHhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051 33 SERFRALFSLRNL---KGP----GPRDALIRATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR 99 (318)
Q Consensus 33 ~~r~~A~~~l~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR 99 (318)
..+...++.+.++ .++ +..+.++++-.+++..+|...+.-|++.+. ...++.|..++. ++++.|.
T Consensus 40 ~~Kl~~L~q~~EL~l~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~--d~d~~V~ 117 (386)
T 3o2t_A 40 DSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLR--DENVNVV 117 (386)
T ss_dssp THHHHHHHHHHHHHHTTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHT--CSSHHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHH
Confidence 4677777776663 333 567777777778888899888888876552 245677777777 7888888
Q ss_pred HHHHHHHHhc
Q 021051 100 HEAAEALGAI 109 (318)
Q Consensus 100 ~~a~~~L~~~ 109 (318)
+.++.+.+.+
T Consensus 118 K~~I~~~tsl 127 (386)
T 3o2t_A 118 KKAILTMTQL 127 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888754
No 116
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=87.06 E-value=0.34 Score=34.85 Aligned_cols=61 Identities=16% Similarity=0.103 Sum_probs=48.3
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHHhhcCCCHHHHHHHHHHHHhchhh
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKEFAKDPEPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~ 300 (318)
....|+.++.++ ++.||..|+.....+..+++.+.|..+.+.+.-.+.-.|..+|.++..+
T Consensus 58 ~R~aLl~Ll~H~--n~~VRl~AA~~~L~~~p~~A~~vLe~ia~~~~~~~~f~A~m~L~~we~G 118 (123)
T 2i9c_A 58 QRTALLSLFEYP--NMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLDDG 118 (123)
T ss_dssp GGGGGGGGGGSS--CHHHHHHHHHTTTTTCHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC--CccHHHHHHHHHHhhChHHHHHHHHHHHhCCCCCccccHHHHHHHHHcC
Confidence 455688888887 8999998888888888888889888887776544667788888887665
No 117
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=85.86 E-value=4.5 Score=40.68 Aligned_cols=110 Identities=10% Similarity=0.077 Sum_probs=72.3
Q ss_pred HHHHHHhCCChhHHHHHHHHh----C--CCCHHHHHHHHHHHhccCC-----------cchHHHHHHHHhccC--C-CHH
Q 021051 195 ALFALRNHGGDEAVSAIIDSL----G--ATSALLKHEVAYVLGQLQN-----------KAASAALSDVLRNVN--E-HPM 254 (318)
Q Consensus 195 a~~~L~~~~~~~~~~~l~~~l----~--d~~~~vr~~a~~~L~~~~~-----------~~~~~~L~~~l~~~~--~-~~~ 254 (318)
++..+..++..+....+.+.+ + ..+|....+++.++|.+.. +..++.|+.+...+. + .+.
T Consensus 462 ~L~~lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k~~ 541 (1073)
T 3gjx_A 462 TLVYLTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNKAI 541 (1073)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchhHH
Confidence 334455555555655555444 3 3469999999999998842 223444554443321 0 134
Q ss_pred HHHHHHHHHhccC-----Ch----hhHHHHHHhhcCCCHHHHHHHHHHHHhchhhhcch
Q 021051 255 VRHEAAEALGSIA-----DD----QSIGLLKEFAKDPEPIVSQSCEVALSMLEYEQLEK 304 (318)
Q Consensus 255 vr~~a~~aL~~~~-----~~----~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~ 304 (318)
++...+..+|++. ++ ..+..|.+.+.++++.|...|+.|+..+......+
T Consensus 542 vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~ 600 (1073)
T 3gjx_A 542 IASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH 600 (1073)
T ss_dssp HHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5555668999875 23 35666667778889999999999999999888876
No 118
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=85.54 E-value=11 Score=38.48 Aligned_cols=46 Identities=11% Similarity=0.022 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhccC---------C--hhhHHHHHHhhcCCCHHHHHHHHHHHHhchh
Q 021051 252 HPMVRHEAAEALGSIA---------D--DQSIGLLKEFAKDPEPIVSQSCEVALSMLEY 299 (318)
Q Consensus 252 ~~~vr~~a~~aL~~~~---------~--~~~~~~L~~~l~~~~~~vr~~a~~aL~~l~~ 299 (318)
+..++..+++++..+- . ...++.+..++.+ +.+|..|+..|..+-.
T Consensus 220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s 276 (1204)
T 3a6p_A 220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVS 276 (1204)
T ss_dssp HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHh
Confidence 3457778888876431 1 1256666666654 5678888888887754
No 119
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=84.75 E-value=8.4 Score=31.66 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcc---CCC----ChHHHHHHhccCCCHHHHHHHHHHHhccCC------CCcHHHHHHhhhcCCCCHHHH
Q 021051 33 SERFRALFSLRNL---KGP----GPRDALIRATKDSSNLLAHEAAFALGQMQD------AEAIPALEAVLNDFSLHPIVR 99 (318)
Q Consensus 33 ~~r~~A~~~l~~~---~~~----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~L~~~l~~~~~~~~vR 99 (318)
..+...++.+.++ +++ +..+.+.++-.+++..+|...+.-+.+... ...++.|..++. ++++.|.
T Consensus 30 ~~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~--d~d~~V~ 107 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLR--DNSAQVI 107 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTT--CSCHHHH
T ss_pred HHHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHH
Confidence 5777777777663 233 344555555468899999999998877552 245778888888 8999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHhhhccCCC-HHHHHHHHHHHHHHH
Q 021051 100 HEAAEALGAIGLESNIPLLKNSLVSDPA-QEVRETCELALERIE 142 (318)
Q Consensus 100 ~~a~~~L~~~~~~~~~~~L~~~l~~d~~-~~vr~~a~~aL~~~~ 142 (318)
+.++.+.+. .++...+.+.++++ +.--..+...+..+.
T Consensus 108 K~~I~~~~~-----iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK 146 (257)
T 3gs3_A 108 KRVIQACGS-----IYKNGLQYLCSLMEPGDSAEQAWNILSLIK 146 (257)
T ss_dssp HHHHHHHHH-----HHHHHHHHHTTSSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 999999885 44554443444432 222344555555443
No 120
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=83.69 E-value=3.1 Score=41.46 Aligned_cols=106 Identities=13% Similarity=0.044 Sum_probs=68.0
Q ss_pred HHHhccCCCCcHH----HHHHhhhc-----CCCCHHHHHHHHHHHHhcCCC------------C----cHHHHHhhhcc-
Q 021051 71 FALGQMQDAEAIP----ALEAVLND-----FSLHPIVRHEAAEALGAIGLE------------S----NIPLLKNSLVS- 124 (318)
Q Consensus 71 ~aL~~~~~~~~~~----~L~~~l~~-----~~~~~~vR~~a~~~L~~~~~~------------~----~~~~L~~~l~~- 124 (318)
..+..++.....+ .+...+.+ .+.+|..+..++.+|+.++.. . ..+.+.. +.+
T Consensus 423 d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~-ll~s 501 (980)
T 3ibv_A 423 DTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILAL-VTTS 501 (980)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHH-HHHS
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHH-HHhC
Confidence 3444455544555 45544431 135689999999998877632 1 2333443 322
Q ss_pred ----CCCHHHHHHHHHHHHHHHhhhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHc------CCCcChHHHHH
Q 021051 125 ----DPAQEVRETCELALERIEKLKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLL------GEEKGMYERYA 194 (318)
Q Consensus 125 ----d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~------~~~~~~~~r~~ 194 (318)
+++|.||..+.+.++++.+|....+ +.++.++..+- +++..+ |..
T Consensus 502 ~i~~~~hp~V~~~~~~~l~rys~~~~~~~-----------------------~~l~~~L~~ll~~~gl~~~~~~V--~~~ 556 (980)
T 3ibv_A 502 QVCRHPHPLVQLLYMEILVRYASFFDYES-----------------------AAIPALIEYFVGPRGIHNTNERV--RPR 556 (980)
T ss_dssp STTTCCCHHHHHHHHHHHHHTGGGGGTCC-----------------------TTHHHHHHHHTSTTTTTCCCTTT--HHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHhcCc-----------------------hhHHHHHHHHhccccccCCChhH--HHH
Confidence 7899999999999999997754322 24555555554 355554 888
Q ss_pred HHHHHHhC
Q 021051 195 ALFALRNH 202 (318)
Q Consensus 195 a~~~L~~~ 202 (318)
|.+++.++
T Consensus 557 a~~af~~f 564 (980)
T 3ibv_A 557 AWYLFYRF 564 (980)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998886
No 121
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=83.06 E-value=5.5 Score=29.06 Aligned_cols=56 Identities=16% Similarity=0.002 Sum_probs=40.6
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
.++.|+..|+|-|+++ ...++..|..++ ...++.+.+.+++.|...+...+..+..
T Consensus 32 ~lp~LL~WLQD~NWPv--A~~i~~~L~~~~-~~l~p~I~~vl~s~D~~W~ywil~~lv~ 87 (134)
T 3ut4_A 32 IIFDLLKWLQDYNWPI--AKDILPVVVLHQ-SIAMPHILTILQGNDIMWKYWVIKLMIP 87 (134)
T ss_dssp HHHHHHGGGSCTTSTT--HHHHHHHHHHTH-HHHHHHHHHHHHSSCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhcCCCcc--HHHHHHHHHHcc-HhhHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788888888886 666777777775 4677777777777777777777766543
No 122
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=79.24 E-value=28 Score=33.58 Aligned_cols=169 Identities=11% Similarity=0.030 Sum_probs=100.4
Q ss_pred cCChhhHHHHHHhhcCCCCCHHHHHH---HHHHHhccCCCC---hHHHHHHhc-cCCCHHHHHHHHHHHhccCC--CCcH
Q 021051 12 KSSPEMEKFLCDRLVDPTQPISERFR---ALFSLRNLKGPG---PRDALIRAT-KDSSNLLAHEAAFALGQMQD--AEAI 82 (318)
Q Consensus 12 ~~~~~~~~~L~~~L~~~~~~~~~r~~---A~~~l~~~~~~~---~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~--~~~~ 82 (318)
+.++.....|.+.|..-++ ..|.. .+..+...+.-. ..+. ...| ++.+..+...++..|+.+.. ...-
T Consensus 487 ~Yd~~~~~~l~~~l~~i~~--~~Ra~li~D~~~l~~~g~~~~~~~l~l-~~~l~~E~~~~~w~~~~~~l~~~~~~~~~~~ 563 (780)
T 1z5h_A 487 LYDDATFSDVMGHYRDLSP--LDRIGLVDDLFAFLLSGHIDPETYRQR-IRNFFDDEDHNVITAIVGQMEYLRMLTHAFD 563 (780)
T ss_dssp ECCHHHHHHHHHTGGGCCH--HHHHHHHHHHHHHHHHTSSCHHHHHHH-HGGGTTCCCHHHHHHHHHHHHHHHTTCSTTH
T ss_pred ECCHHHHHHHHHHhccCCH--HHHHHHHHHHHHHHHcCCCCHHHHHHH-HHHhccCCcHHHHHHHHHHHHHHHhchHHHH
Confidence 4577788888888854343 67744 444454444422 3333 3455 45677788777777665432 1222
Q ss_pred HHHHHhhh-------c--CCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhc--cCCCHHHHHHHHHHHHHHHhhhccCccc
Q 021051 83 PALEAVLN-------D--FSLHPIVRHEAAEALGAIGLESNIPLLKNSLV--SDPAQEVRETCELALERIEKLKASGSDG 151 (318)
Q Consensus 83 ~~L~~~l~-------~--~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~--~d~~~~vr~~a~~aL~~~~~~~~~~~~~ 151 (318)
..+..++. . .+.+..+|..++..++..+.++++. ..+.+. ..-++.+|..+.....+.+
T Consensus 564 ~~~~~l~~~~~~~l~~~~~~~~~~~r~~~~~~a~~~~~~~~~~-a~~~f~~~~~i~~~lr~~v~~~~~~~g--------- 633 (780)
T 1z5h_A 564 DDARAFCRSRMQFLTGKQDENLKIALGRVSRLYVMVDESYAEE-MSKLFKDFDSAEPEMRSSIATAYALVT--------- 633 (780)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHH-HHTTGGGGGGSCHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHhcCCHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcC---------
Confidence 22222221 0 0123566777788888888777777 665332 2347888877766665544
Q ss_pred cccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHh
Q 021051 152 SSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSL 215 (318)
Q Consensus 152 ~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l 215 (318)
.. ...+.+.+...+.. ..|..++.+|+...+...+..+.+..
T Consensus 634 --------------------~~-~~~l~~~~~~~~~~-~~~~~~l~al~~~~~~~~~~~~l~~~ 675 (780)
T 1z5h_A 634 --------------------GD-LKGLLEKFRSVDRD-EDRVRIISAFGKLKSNTDLSTVYGMV 675 (780)
T ss_dssp --------------------CC-HHHHHHHHHSCCSH-HHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred --------------------cH-HHHHHHHHhcCCCH-HHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 12 66677777655433 35888899999988887777766643
No 123
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=76.52 E-value=13 Score=27.38 Aligned_cols=45 Identities=11% Similarity=0.049 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 30 QPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALG 74 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 74 (318)
+||..-...+..+..-. ..+++..|.+.+++.++.++..|+..|.
T Consensus 21 ~dw~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe 67 (140)
T 3ldz_A 21 EDWGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLG 67 (140)
T ss_dssp CCHHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 45766666666665432 2356777778888888888887776653
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=76.37 E-value=16 Score=29.25 Aligned_cols=93 Identities=12% Similarity=0.089 Sum_probs=63.7
Q ss_pred hHHHHHHhhcCC---CCCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhc------------cCCC
Q 021051 17 MEKFLCDRLVDP---TQPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQ------------MQDA 79 (318)
Q Consensus 17 ~~~~L~~~L~~~---~~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~------------~~~~ 79 (318)
..+.+++-..++ ++||..-...+..+..-. ..+++..|.+.+++.++.++..|+..|.. +...
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 444444444433 246877777777776532 24688888899999999999999888743 2344
Q ss_pred CcHHHHHHhhhcCCCCHHHHHHHHHHHHhcC
Q 021051 80 EAIPALEAVLNDFSLHPIVRHEAAEALGAIG 110 (318)
Q Consensus 80 ~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~ 110 (318)
..++.|..++.. ..++.|+..++..+..+.
T Consensus 88 ~fl~~l~~l~~~-~~~~~Vk~kil~li~~W~ 117 (226)
T 3zyq_A 88 QTMEELKDLLKR-QVEVNVRNKILYLIQAWA 117 (226)
T ss_dssp HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence 566677777763 567888888888776553
No 125
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=76.30 E-value=71 Score=32.54 Aligned_cols=123 Identities=11% Similarity=0.004 Sum_probs=77.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHhccCC-CChHHHHHHhc--cCCCHHHHHHHHHHHhcc-----CC--C----CcHH
Q 021051 18 EKFLCDRLVDPTQPISERFRALFSLRNLKG-PGPRDALIRAT--KDSSNLLAHEAAFALGQM-----QD--A----EAIP 83 (318)
Q Consensus 18 ~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~-~~~~~~L~~~l--~d~~~~vr~~a~~aL~~~-----~~--~----~~~~ 83 (318)
+..++..+.+++.+...|..|-..|..+.. ++....+...| .+.++.+|..|+..|... .. . ..-.
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~ 92 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN 92 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCchHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence 334444445664334789999999987754 44555555544 456889999999887542 11 0 1123
Q ss_pred HHHHhhhcC-----CCCHHHHHHHHHHHHhcC-------CCCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 84 ALEAVLNDF-----SLHPIVRHEAAEALGAIG-------LESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 84 ~L~~~l~~~-----~~~~~vR~~a~~~L~~~~-------~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
.+++.+... +.++.+|.....+++.+. .++.++.|.+.+ +. ++..+..+...|..+.
T Consensus 93 ~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~Wp~ll~~L~~~~-~~-~~~~~e~~L~iL~~L~ 161 (1204)
T 3a6p_A 93 SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLS-KQ-GETQTELVMFILLRLA 161 (1204)
T ss_dssp HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHH-HT-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHh-cC-CHHHHHHHHHHHHHHH
Confidence 445554422 146888888887776542 467788888844 33 5666777888888775
No 126
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=76.07 E-value=16 Score=27.64 Aligned_cols=79 Identities=15% Similarity=0.098 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhcc------------CCCCcHHHHHHhhhcCCC
Q 021051 29 TQPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQM------------QDAEAIPALEAVLNDFSL 94 (318)
Q Consensus 29 ~~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~~~~ 94 (318)
++||..-...+..+..-. ..+++..|.+.+++.++.++..|+..|..+ .....++.|..++. ...
T Consensus 30 ~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~-~~~ 108 (163)
T 1x5b_A 30 TEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIK-NKA 108 (163)
T ss_dssp SCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHH-TTC
T ss_pred CcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHc-cCC
Confidence 456777777777775532 246788888888899999988888776432 12234444555554 124
Q ss_pred CHHHHHHHHHHHHh
Q 021051 95 HPIVRHEAAEALGA 108 (318)
Q Consensus 95 ~~~vR~~a~~~L~~ 108 (318)
++.||..++..+..
T Consensus 109 ~~~Vk~kil~li~~ 122 (163)
T 1x5b_A 109 HPKVCEKLKSLMVE 122 (163)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555554443
No 127
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=75.92 E-value=20 Score=26.67 Aligned_cols=58 Identities=14% Similarity=-0.016 Sum_probs=38.2
Q ss_pred hHHHHHHhhcCC---CCCHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHh
Q 021051 17 MEKFLCDRLVDP---TQPISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALG 74 (318)
Q Consensus 17 ~~~~L~~~L~~~---~~~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~ 74 (318)
.+..+++-..++ ++||..-...+..+..-.. .+++..|.+.+++.++.+...|+..|.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe 73 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLE 73 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444444433 2467777777777765432 457778888888889988888887664
No 128
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=74.25 E-value=25 Score=28.28 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=56.9
Q ss_pred CCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHH----HHhccC----Chh----hHHHHHHhhcCCCH
Q 021051 217 ATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAE----ALGSIA----DDQ----SIGLLKEFAKDPEP 284 (318)
Q Consensus 217 d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~----aL~~~~----~~~----~~~~L~~~l~~~~~ 284 (318)
-++|.+.-..+..+- .+.+...+.+...+.++ +.-+|+.++. .|..+. +.. .++.+...+.+++.
T Consensus 89 ~~nWd~~D~~~~~l~-~~~~~~~~~~~~W~~s~--~~w~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~~l~~~~~ 165 (235)
T 1t06_A 89 AYFYMLSDYVVAVTL-SESNIAQDVADKWIASG--DELKMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKDTIHHSPE 165 (235)
T ss_dssp CCSHHHHHHTHHHHH-TTSSSHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHHHGGGSCH
T ss_pred CCcHHHHHHHHHHHH-hcCchHHHHHHHHHcCc--HHHHHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHHHccCChH
Confidence 356777665544442 23456777788888776 8888888887 545433 222 34445556788999
Q ss_pred HHHHHHHHHHHhchhhhcc
Q 021051 285 IVSQSCEVALSMLEYEQLE 303 (318)
Q Consensus 285 ~vr~~a~~aL~~l~~~~~~ 303 (318)
.|+.++.|+|..++.....
T Consensus 166 ~v~kAi~W~Lr~~gk~~~~ 184 (235)
T 1t06_A 166 RTKSAMNNFLNTVAISYVP 184 (235)
T ss_dssp HHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHHHHhhCHH
Confidence 9999999999998876554
No 129
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=70.54 E-value=27 Score=26.63 Aligned_cols=94 Identities=11% Similarity=-0.014 Sum_probs=60.4
Q ss_pred hHHHHHHhhcCC---CCCHHHHHHHHHHHhccCC--CChHHHHHHhccCCCHHHHHHHHHHHhc------------cCCC
Q 021051 17 MEKFLCDRLVDP---TQPISERFRALFSLRNLKG--PGPRDALIRATKDSSNLLAHEAAFALGQ------------MQDA 79 (318)
Q Consensus 17 ~~~~L~~~L~~~---~~~~~~r~~A~~~l~~~~~--~~~~~~L~~~l~d~~~~vr~~a~~aL~~------------~~~~ 79 (318)
.+..+++-..++ ++||..-...+..+..-.. .+++..|.+.+++.++.++..|+..|.. +...
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 455555544443 4568777777777755432 4578888888899999999998887743 2233
Q ss_pred CcHHHHHHhhhc----CCCCHHHHHHHHHHHHhcC
Q 021051 80 EAIPALEAVLND----FSLHPIVRHEAAEALGAIG 110 (318)
Q Consensus 80 ~~~~~L~~~l~~----~~~~~~vR~~a~~~L~~~~ 110 (318)
..+..|..++.. ...++.||..++..+..+.
T Consensus 93 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 127 (171)
T 1juq_A 93 RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHH
Confidence 456666666651 1235677777777776543
No 130
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=67.73 E-value=29 Score=27.78 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=48.2
Q ss_pred cHHHHHHHHcCCCc---ChHHHHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------CCc
Q 021051 174 SVDMLREVLLGEEK---GMYERYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQL------------QNK 236 (318)
Q Consensus 174 ~~~~L~~~l~~~~~---~~~~r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------~~~ 236 (318)
.+..+++...++.. +...-......+..- +..+++..|.+-+++.++.+...|+..|... ...
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~ 87 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANK 87 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSH
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccH
Confidence 34555555544322 221233344444432 3357777777777777888877777776643 223
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhc
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGS 265 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~ 265 (318)
+-++.|..++... .++.||..++..+..
T Consensus 88 ~fl~~l~~l~~~~-~~~~Vk~kil~li~~ 115 (226)
T 3zyq_A 88 QTMEELKDLLKRQ-VEVNVRNKILYLIQA 115 (226)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCHHHHHHHHHHHHH
Confidence 3444555555432 256666655544433
No 131
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=66.69 E-value=17 Score=26.92 Aligned_cols=80 Identities=15% Similarity=-0.089 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhcc------------CCCCcHHHHHHhhhcC---
Q 021051 30 QPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQM------------QDAEAIPALEAVLNDF--- 92 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~------------~~~~~~~~L~~~l~~~--- 92 (318)
+||..-...+..+..-. ..+++..|.+.+++.++.++..|+..|..+ +....+..|..++...
T Consensus 17 ~dw~~~leicD~I~~~~~~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~ 96 (148)
T 1mhq_A 17 QDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLG 96 (148)
T ss_dssp CCHHHHHHHHHHHHHSSHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTS
T ss_pred cCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCC
Confidence 45666666666665432 246777888888888999888888776432 2233444455554410
Q ss_pred -CCCHHHHHHHHHHHHhc
Q 021051 93 -SLHPIVRHEAAEALGAI 109 (318)
Q Consensus 93 -~~~~~vR~~a~~~L~~~ 109 (318)
..++.||..++..+..+
T Consensus 97 ~~~~~~Vk~kil~li~~W 114 (148)
T 1mhq_A 97 SWATGKVKGRVIEILFSW 114 (148)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 13456666655555443
No 132
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=66.36 E-value=18 Score=34.40 Aligned_cols=73 Identities=16% Similarity=0.205 Sum_probs=42.6
Q ss_pred ChhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHHHH
Q 021051 204 GDEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLLKE 277 (318)
Q Consensus 204 ~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L~~ 277 (318)
.+.+++.++.+.+=.++.-..+|...|..+..-+.... +++|...-.++.||.-|+..|....+++..-+|.+
T Consensus 75 ~~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~~~dA-LeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQ 147 (696)
T 2x6h_A 75 HKKALTKFLKCINWKLEDEVTQALWMLANWAPMDVEDA-LELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQ 147 (696)
T ss_dssp CHHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCCHHHH-HHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ChhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCCHHHH-HHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 45666666655544455555566777777765544343 33343222367777777777777776665444443
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=65.92 E-value=36 Score=24.84 Aligned_cols=29 Identities=7% Similarity=0.061 Sum_probs=16.7
Q ss_pred hhHHHHHHhhcCCCHHHHHHHHHHHHhch
Q 021051 270 QSIGLLKEFAKDPEPIVSQSCEVALSMLE 298 (318)
Q Consensus 270 ~~~~~L~~~l~~~~~~vr~~a~~aL~~l~ 298 (318)
+.++.|.++++..++.|+..+..-+..+.
T Consensus 85 ~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 85 DFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 34444555554456667766666666554
No 134
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=64.63 E-value=10 Score=35.33 Aligned_cols=70 Identities=16% Similarity=0.233 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHHH
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGLL 275 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~L 275 (318)
+.+++.+..+.+=.++.-..+|...|..|..-+.... ++++...=.|+.||.-|+..|....+++..-+|
T Consensus 62 ~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~i~~~dA-LELL~~~f~d~~VR~yAV~~L~~~~D~eL~lYL 131 (614)
T 3ls8_A 62 EKALTKFLKCVNWDLPQEAKQALELLGKWKPMDVEDS-LELLSSHYTNPTVRRYAVARLRQADDEDLLMYL 131 (614)
T ss_dssp GGGHHHHHTTCCTTSHHHHHHHHHHHHHSCCCCHHHH-GGGGSTTCCCHHHHHHHHHHHTTSCHHHHHHTH
T ss_pred hhHHHHHhccCCCCCHHHHHHHHHHHhhCCCCCHHHH-HHhCcccCCCHHHHHHHHHHHHhCChHHHHHHH
Confidence 4455555444433344444455566666654443333 233322222566666666666666655544333
No 135
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=63.37 E-value=38 Score=26.87 Aligned_cols=78 Identities=10% Similarity=0.060 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHhccC--CCChHHHHHHhccCCCHHHHHHHHHHHhc------------cCCCCcHHHHHHhhhcCCCC
Q 021051 30 QPISERFRALFSLRNLK--GPGPRDALIRATKDSSNLLAHEAAFALGQ------------MQDAEAIPALEAVLNDFSLH 95 (318)
Q Consensus 30 ~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~d~~~~vr~~a~~aL~~------------~~~~~~~~~L~~~l~~~~~~ 95 (318)
+||..-......+..-. ..+++..|.+.+++.++.++..|+..|.. ++....+..|..++.+ ..+
T Consensus 21 ~dw~~~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~-~~~ 99 (220)
T 1dvp_A 21 PDWPSILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLES-TPH 99 (220)
T ss_dssp CCHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHH-CSC
T ss_pred cCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcC-CCc
Confidence 46777766666665432 24677888888899999999998877743 2233455555555553 345
Q ss_pred HHHHHHHHHHHHh
Q 021051 96 PIVRHEAAEALGA 108 (318)
Q Consensus 96 ~~vR~~a~~~L~~ 108 (318)
+.||..++..+..
T Consensus 100 ~~Vk~kil~li~~ 112 (220)
T 1dvp_A 100 ENVRQKMLELVQT 112 (220)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655544
No 136
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=63.37 E-value=14 Score=36.86 Aligned_cols=128 Identities=13% Similarity=0.077 Sum_probs=80.4
Q ss_pred CChhhHHHHHHhhcCC---CCCHHHHHHHHHHHhcc--------CC---CChHHHHHHhccCCC-HHHHHHHHHHHhcc-
Q 021051 13 SSPEMEKFLCDRLVDP---TQPISERFRALFSLRNL--------KG---PGPRDALIRATKDSS-NLLAHEAAFALGQM- 76 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~---~~~~~~r~~A~~~l~~~--------~~---~~~~~~L~~~l~d~~-~~vr~~a~~aL~~~- 76 (318)
+.++.++.++..+..- +++| .|..++..+..+ .. ....+.+..+|.|+. .+||..|+.+|+.+
T Consensus 794 ~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll 872 (997)
T 1vsy_5 794 IRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIV 872 (997)
T ss_dssp CCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH
Confidence 4566666666665531 2357 999988875442 11 235566777789999 99999999999765
Q ss_pred CCC---CcHHHHHHhhhcCC-C-------------CHHHHHHHHHHHHhcC--------CCCcHHHHHhhh---ccCCCH
Q 021051 77 QDA---EAIPALEAVLNDFS-L-------------HPIVRHEAAEALGAIG--------LESNIPLLKNSL---VSDPAQ 128 (318)
Q Consensus 77 ~~~---~~~~~L~~~l~~~~-~-------------~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l---~~d~~~ 128 (318)
+.. .....+..-+...- . +...|++++-+|+.+= .|..+|.+...| .+++.+
T Consensus 873 ~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~ 952 (997)
T 1vsy_5 873 HNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM 952 (997)
T ss_dssp HSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS
T ss_pred HcCCchhhHHHHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc
Confidence 332 22333433333111 1 0157889999998751 156665544323 356555
Q ss_pred HHHHHHHHHHHHHH
Q 021051 129 EVRETCELALERIE 142 (318)
Q Consensus 129 ~vr~~a~~aL~~~~ 142 (318)
|+..+-.+++.+.
T Consensus 953 -i~~tvk~tlseFk 965 (997)
T 1vsy_5 953 -TGNAAKNTISEFK 965 (997)
T ss_dssp -HHHHTHHHHHHHH
T ss_pred -hHHHHHHHHHHHH
Confidence 9999999999886
No 137
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=61.08 E-value=46 Score=24.34 Aligned_cols=93 Identities=5% Similarity=-0.069 Sum_probs=67.9
Q ss_pred hhHHHHHHHHh--CCCCHHHHHHHHHHHhccCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hhHHHHHHhhc
Q 021051 205 DEAVSAIIDSL--GATSALLKHEVAYVLGQLQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QSIGLLKEFAK 280 (318)
Q Consensus 205 ~~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 280 (318)
.+++..+.+++ ...++........++...+. .+++..+...+.-.++++........++...|+. +++..+.+.+.
T Consensus 53 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777776665 33456666655666666665 4688888888875556889999999999999874 58888888765
Q ss_pred -CCCHHHHHHHHHHHHhc
Q 021051 281 -DPEPIVSQSCEVALSML 297 (318)
Q Consensus 281 -~~~~~vr~~a~~aL~~l 297 (318)
.+++.++..|..-|..+
T Consensus 133 l~~~~~~~~~A~~ll~~l 150 (151)
T 3gyz_A 133 HSNDEKLKIKAQSYLDAI 150 (151)
T ss_dssp HCCCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHhh
Confidence 67888888888777655
No 138
>2qzg_A Conserved uncharacterized archaeal protein; unknown function protein, structu genomics, PSI-2, protein structure initiative; 2.09A {Methanococcus maripaludis S2} SCOP: a.29.14.1
Probab=59.25 E-value=38 Score=22.79 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=33.2
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHhccCCh---------hhHHHHHHhhcCCC--HHHHHHHHHHHHh
Q 021051 239 SAALSDVLRNVNEHPMVRHEAAEALGSIADD---------QSIGLLKEFAKDPE--PIVSQSCEVALSM 296 (318)
Q Consensus 239 ~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~~~~--~~vr~~a~~aL~~ 296 (318)
+..|.+...|..-..++|++|-++...+.++ .++..|.+..+|++ ...|......++.
T Consensus 20 ~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAAtAIs~LDeISnDPNmP~htRT~IW~ivS~ 88 (94)
T 2qzg_A 20 SSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQELIVRSATAIQYLDDISEDPNMPIHTRTQIWGIVSE 88 (94)
T ss_dssp HHHHHHHHTCTTSCHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHHTTCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence 3444444455443456777776666666432 46788888888876 4444333333333
No 139
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=58.84 E-value=65 Score=27.50 Aligned_cols=57 Identities=16% Similarity=0.115 Sum_probs=38.0
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhC--------------CChhHHHHHHHHhCCCCHHHHHHHHHHHhc
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNH--------------GGDEAVSAIIDSLGATSALLKHEVAYVLGQ 232 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~--------------~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~ 232 (318)
.......++.+++.- .|+.+++.||.+ .+.+-+..+..+|+|++..++.+|.....-
T Consensus 210 Ff~~y~~Ll~S~NYV--TkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKv 280 (341)
T 1upk_A 210 FFSEYEKLLHSENYV--TKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKV 280 (341)
T ss_dssp HHHHHHHHTTCSSHH--HHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcch--hHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheee
Confidence 344455556555544 488888888765 345667777777788888888777776653
No 140
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=58.68 E-value=53 Score=24.31 Aligned_cols=29 Identities=10% Similarity=-0.035 Sum_probs=15.1
Q ss_pred hhHHHHHHhhcC------CCHHHHHHHHHHHHhch
Q 021051 270 QSIGLLKEFAKD------PEPIVSQSCEVALSMLE 298 (318)
Q Consensus 270 ~~~~~L~~~l~~------~~~~vr~~a~~aL~~l~ 298 (318)
+.++.|.+++.+ .++.|+..+...+..+.
T Consensus 91 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 91 RFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 344555555432 34566666665555554
No 141
>2qsb_A UPF0147 protein TA0600; structural genomics, four-helix bundle, PSI-2, protein structure initiative; HET: MSE; 1.30A {Thermoplasma acidophilum dsm 1728} SCOP: a.29.14.1
Probab=58.40 E-value=38 Score=22.53 Aligned_cols=59 Identities=17% Similarity=0.269 Sum_probs=33.7
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHHhccCCh---------hhHHHHHHhhcCCC--HHHHHHHHHHHHh
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEALGSIADD---------QSIGLLKEFAKDPE--PIVSQSCEVALSM 296 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~---------~~~~~L~~~l~~~~--~~vr~~a~~aL~~ 296 (318)
++..|.+...|..-..++|++|-++...+.++ .++..|.+..+|++ ...|......++.
T Consensus 15 ~~~~L~~I~~D~sVPRNIRraA~ea~~~L~~e~~~~~vRAA~aIs~LDeISnDPNmP~h~RT~IW~ivS~ 84 (89)
T 2qsb_A 15 VMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLDLRCATVLSMLDEMANDPNVPAHGRTDLYTIISK 84 (89)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Confidence 33444555555443456777766666666432 46788888888876 4444333333333
No 142
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=58.38 E-value=56 Score=24.54 Aligned_cols=88 Identities=14% Similarity=0.176 Sum_probs=46.8
Q ss_pred HHHHHHHHcCC---CcChHHHHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------CCcc
Q 021051 175 VDMLREVLLGE---EKGMYERYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQL------------QNKA 237 (318)
Q Consensus 175 ~~~L~~~l~~~---~~~~~~r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------~~~~ 237 (318)
+..+++...++ .++...-...+..+..- +..+++..|.+-+++.++.+...|+..|... ...+
T Consensus 16 ~~~~IekATs~~~~~~Dw~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~ 95 (163)
T 1x5b_A 16 FEQDVEKATNEYNTTEDWSLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRD 95 (163)
T ss_dssp THHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHH
Confidence 44555555443 22221233344444433 2346777777777777888877777777542 1233
Q ss_pred hHHHHHHHHhccCCCHHHHHHHHHHH
Q 021051 238 ASAALSDVLRNVNEHPMVRHEAAEAL 263 (318)
Q Consensus 238 ~~~~L~~~l~~~~~~~~vr~~a~~aL 263 (318)
-++.|+.++.. ..++.||..++..+
T Consensus 96 Fl~el~~l~~~-~~~~~Vk~kil~li 120 (163)
T 1x5b_A 96 FATEVRAVIKN-KAHPKVCEKLKSLM 120 (163)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcc-CCCHHHHHHHHHHH
Confidence 44555555553 23566666555433
No 143
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=57.04 E-value=14 Score=36.74 Aligned_cols=116 Identities=11% Similarity=0.171 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhC--------CC---hhHHHHHHHHhCCCC-HHHHHHHHHHHhcc--CC-c-chHHHHHHHHhccCCC--
Q 021051 191 ERYAALFALRNH--------GG---DEAVSAIIDSLGATS-ALLKHEVAYVLGQL--QN-K-AASAALSDVLRNVNEH-- 252 (318)
Q Consensus 191 ~r~~a~~~L~~~--------~~---~~~~~~l~~~l~d~~-~~vr~~a~~~L~~~--~~-~-~~~~~L~~~l~~~~~~-- 252 (318)
+|..++..+..+ .. ......+..+|.|+. .+||..|..+|+.+ +. . .....++..+.+.-..
T Consensus 817 ~R~~~L~~lq~~~f~n~f~l~~~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~ 896 (997)
T 1vsy_5 817 QTKLQLAFIQHFLSAELLQLTEEEKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNK 896 (997)
T ss_dssp SHHHHHHHHHHHHHHHTTTSCTTHHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcc
Confidence 388887665433 22 234566667788999 99999999999776 33 2 3333444444332101
Q ss_pred ------------HHHHHHHHHHHhccC------C--hhhH----HHHHHhhcCCCHHHHHHHHHHHHhchhhhcchhhhc
Q 021051 253 ------------PMVRHEAAEALGSIA------D--DQSI----GLLKEFAKDPEPIVSQSCEVALSMLEYEQLEKSFEY 308 (318)
Q Consensus 253 ------------~~vr~~a~~aL~~~~------~--~~~~----~~L~~~l~~~~~~vr~~a~~aL~~l~~~~~~~~~~~ 308 (318)
...|.+|+.+|+.+- - |.-+ ..|-....++. .|+..+..+|+..+..-.+. |++
T Consensus 897 ~~~~~~~~~~~~~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~-~i~~tvk~tlseFkrTH~D~-W~~ 974 (997)
T 1vsy_5 897 YTSKERQKLSKTDIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSG-MTGNAAKNTISEFKKVRADT-WKF 974 (997)
T ss_dssp SCHHHHHHHHHHCHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCS-SHHHHTHHHHHHHHHHTSTT-HHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCC-chHHHHHHHHHHHHhccchh-HHH
Confidence 147789999998862 1 3334 34444455644 49999999999998776544 653
No 144
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=54.92 E-value=1e+02 Score=26.35 Aligned_cols=26 Identities=27% Similarity=0.397 Sum_probs=16.4
Q ss_pred hHHHHHHhhcCCCCCHHHHHHHHHHHhc
Q 021051 17 MEKFLCDRLVDPTQPISERFRALFSLRN 44 (318)
Q Consensus 17 ~~~~L~~~L~~~~~~~~~r~~A~~~l~~ 44 (318)
....+++.|.+.+. ..+..++..|..
T Consensus 119 ra~~iiekL~~~~~--~~lr~aLfsLk~ 144 (339)
T 3dad_A 119 RVNAILEKLYSSSG--PELRRSLFSLKQ 144 (339)
T ss_dssp HHHHHHHHHHHCCH--HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCc--HHHHHHHHHHHH
Confidence 34456666665554 677777777766
No 145
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=54.07 E-value=60 Score=23.56 Aligned_cols=100 Identities=9% Similarity=-0.045 Sum_probs=69.7
Q ss_pred HHHHHHhCCCh---hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh--
Q 021051 195 ALFALRNHGGD---EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-- 269 (318)
Q Consensus 195 a~~~L~~~~~~---~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-- 269 (318)
++..|..++.. ..++.|..-+.|-+|.+...++..|..++ +..+|.+.+.+.+. |..=++-.+..+..--..
T Consensus 17 a~~~L~~~~~~~i~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~-~~l~p~I~~vl~s~--D~~W~ywil~~lv~~~~~~~ 93 (134)
T 3ut4_A 17 TIDQLCKLIDNEIEPIIFDLLKWLQDYNWPIAKDILPVVVLHQ-SIAMPHILTILQGN--DIMWKYWVIKLMIPYLIYPN 93 (134)
T ss_dssp THHHHTTCCHHHHHHHHHHHHGGGSCTTSTTHHHHHHHHHHTH-HHHHHHHHHHHHSS--CHHHHHHHHHHHGGGCCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHcc-HhhHHHHHHHHHcC--ChHHHHHHHHHHHHcCCHHH
Confidence 45555556554 34566667779999999999999999887 58899999999765 777777777666543332
Q ss_pred --hhHHHHHHhhcCC-----CHHHHHHHHHHHHhc
Q 021051 270 --QSIGLLKEFAKDP-----EPIVSQSCEVALSML 297 (318)
Q Consensus 270 --~~~~~L~~~l~~~-----~~~vr~~a~~aL~~l 297 (318)
...+.|.++...+ ...|...|..-|.++
T Consensus 94 ~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~ 128 (134)
T 3ut4_A 94 KQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY 128 (134)
T ss_dssp HHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence 3455566665543 366666676666655
No 146
>1t06_A Hypothetical protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.90A {Bacillus cereus} SCOP: a.118.1.17
Probab=53.96 E-value=83 Score=25.14 Aligned_cols=116 Identities=9% Similarity=0.005 Sum_probs=73.9
Q ss_pred HHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccC-CCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHH
Q 021051 19 KFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKD-SSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPI 97 (318)
Q Consensus 19 ~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d-~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~ 97 (318)
+...++..++.. +.|..|...+.... -..+.+-.++.+ +++.+-...+..+.. ..+...+.+.+.+. +++..
T Consensus 51 ~la~~Lw~~~~~--E~r~lA~li~~~~~--~~~~~~~~~v~~~~nWd~~D~~~~~l~~-~~~~~~~~~~~W~~--s~~~w 123 (235)
T 1t06_A 51 ELAEELYATGNY--DAMYFAGIIADPKA--MSESDFDRWIDGAYFYMLSDYVVAVTLS-ESNIAQDVADKWIA--SGDEL 123 (235)
T ss_dssp HHHHHHHHTCCH--HHHHHHHHHCCGGG--CCHHHHHHHHHTCCSHHHHHHTHHHHHT-TSSSHHHHHHHHHH--SCCHH
T ss_pred HHHHHHHcCCcH--HHHHHHHHhhCHHh--cCHHHHHHHHhCCCcHHHHHHHHHHHHh-cCchHHHHHHHHHc--CcHHH
Confidence 445666777765 88888886654322 223334444433 345555544444422 23456677788888 89999
Q ss_pred HHHHHHH----HHHhcCC----CC----cHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 98 VRHEAAE----ALGAIGL----ES----NIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 98 vR~~a~~----~L~~~~~----~~----~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+|+.++. .|..+.. .. .++.+.. ..+|++..|+++..++|..++
T Consensus 124 ~rR~ai~~q~~ll~~~~~k~~~~~~~~~~l~~i~~-~l~~~~~~v~kAi~W~Lr~~g 179 (235)
T 1t06_A 124 KMSAGWSCYCWLLGNRKDNAFSESKISDMLEMVKD-TIHHSPERTKSAMNNFLNTVA 179 (235)
T ss_dssp HHHHHHHHHHHHHHHSCGGGSCHHHHHHHHHHHHH-HGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccCcChhhHHHHHHHHHH-HccCChHHHHHHHHHHHHHHH
Confidence 9999998 6665431 11 2333333 457999999999999999888
No 147
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=53.03 E-value=1.8e+02 Score=28.63 Aligned_cols=89 Identities=7% Similarity=-0.053 Sum_probs=60.4
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHh----CCC-----CHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHH
Q 021051 192 RYAALFALRNHGGDEAVSAIIDSL----GAT-----SALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEA 262 (318)
Q Consensus 192 r~~a~~~L~~~~~~~~~~~l~~~l----~d~-----~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~a 262 (318)
|..++..+...|.++++....+.+ .++ .+.+|..+.-...+.++.+....+.+.....+ ++..|..++.+
T Consensus 689 r~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr~~vy~~~~~~g~~~~~~~l~~~~~~~~-~~~ek~~ll~a 767 (909)
T 4fke_A 689 EINAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLRSTIYCNAIAQGGQDQWDFAWGQLQQAQ-LVNEADKLRSA 767 (909)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTHHHHHHHHHHHSCHHHHHHHHHHHHHCC-SHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHccC-CHHHHHHHHHH
Confidence 666777778888877665554433 322 35667655444444566667777888777643 78888899999
Q ss_pred HhccCChhhHHHHHHhhcC
Q 021051 263 LGSIADDQSIGLLKEFAKD 281 (318)
Q Consensus 263 L~~~~~~~~~~~L~~~l~~ 281 (318)
||...++..+..++...-+
T Consensus 768 L~~~~d~~~l~~~L~~~l~ 786 (909)
T 4fke_A 768 LACSNEVWLLNRYLGYTLN 786 (909)
T ss_dssp HTTCCCHHHHHHHHHHTTC
T ss_pred hCCCCCHHHHHHHHHHHhC
Confidence 9998888887777775433
No 148
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=51.20 E-value=71 Score=23.53 Aligned_cols=26 Identities=12% Similarity=-0.050 Sum_probs=12.7
Q ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHh
Q 021051 206 EAVSAIIDSLGATSALLKHEVAYVLG 231 (318)
Q Consensus 206 ~~~~~l~~~l~d~~~~vr~~a~~~L~ 231 (318)
+++..|.+-+++.++.+...|+..|.
T Consensus 38 ~a~rai~krl~~~n~~vql~AL~LLe 63 (148)
T 1mhq_A 38 HAPWLLAHKIQSPQEKEALYALTVLE 63 (148)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44444444445555555555544443
No 149
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=49.43 E-value=71 Score=31.56 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=43.8
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS 124 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~ 124 (318)
|++.+.+....+-.++.-...+...|..+.. -....-+++|...=+++.||..|++.|....+.+ +++.|++++..
T Consensus 439 p~aL~~~l~sv~w~~~~~~~~~~~ll~~W~~-~~~~~ALeLL~~~f~d~~Vr~yAv~~L~~~~d~~l~~yL~QLVQaLky 517 (940)
T 2wxf_A 439 PEALARLLLVTKWNKHEDVAQMLYLLCSWPE-LPVLSALELLDFSFPDCYVGSFAIKSLRKLTDDELFQYLLQLVQVLKY 517 (940)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCC-CCHHHHHHHTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGG
T ss_pred chHHHHHHhccCCCCHHHHHHHHHHHccCCC-CCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhh
Confidence 4555555554444445444555666666654 3344445555533467777777777777766543 35666665544
Q ss_pred C
Q 021051 125 D 125 (318)
Q Consensus 125 d 125 (318)
+
T Consensus 518 E 518 (940)
T 2wxf_A 518 E 518 (940)
T ss_dssp C
T ss_pred c
Confidence 4
No 150
>2i9c_A Hypothetical protein RPA1889; structural genomics, SAD, PSI-2, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.00A {Rhodopseudomonas palustris} SCOP: a.118.1.25
Probab=48.16 E-value=15 Score=26.32 Aligned_cols=58 Identities=19% Similarity=0.103 Sum_probs=33.4
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHH
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERI 141 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~ 141 (318)
.-..|..++. |+++.||..|....-....+.+...|.. +.+.+.-.+...|-.+|.++
T Consensus 58 ~R~aLl~Ll~--H~n~~VRl~AA~~~L~~~p~~A~~vLe~-ia~~~~~~~~f~A~m~L~~w 115 (123)
T 2i9c_A 58 QRTALLSLFE--YPNMQVRLQAAKLTLAVAPVKAREQLEA-IVSSKWFPQAGDAGMCLDLL 115 (123)
T ss_dssp GGGGGGGGGG--SSCHHHHHHHHHTTTTTCHHHHHHHHHH-HHHHTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCccHHHHHHHHHHhhChHHHHHHHHH-HHhCCCCCccccHHHHHHHH
Confidence 4445777777 7777777776655545544556666666 44444333555555555544
No 151
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=44.89 E-value=1.5e+02 Score=25.34 Aligned_cols=89 Identities=24% Similarity=0.196 Sum_probs=61.2
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHhc-cC-C---------CCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCC--------
Q 021051 51 RDALIRATKDSSNLLAHEAAFALGQ-MQ-D---------AEAIPALEAVLNDFSLHPIVRHEAAEALGAIGL-------- 111 (318)
Q Consensus 51 ~~~L~~~l~d~~~~vr~~a~~aL~~-~~-~---------~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~-------- 111 (318)
+..+++.|.+.+...+..++..|.+ +. + .+.+..|+.... +.+......++++|+.+-.
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~--~~~gN~q~Y~L~AL~~LM~~v~Gm~gv 197 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA--AADHNYQSYILRALGQLMLFVDGMLGV 197 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT--TSCHHHHHHHHHHHHHHTTSHHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH--hcChHHHHHHHHHHHHHHhccccccch
Confidence 3444555556667777788888876 32 2 245777788888 7788899999999987643
Q ss_pred ---CCcHHHHHhhhccCCCHHHHHHHHHHHHHHH
Q 021051 112 ---ESNIPLLKNSLVSDPAQEVRETCELALERIE 142 (318)
Q Consensus 112 ---~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~ 142 (318)
+..+..+.. +.+..+..|.+.+...|..+.
T Consensus 198 vs~~~fI~~lys-lv~s~~~~V~k~AL~LL~v~V 230 (339)
T 3dad_A 198 VAHSDTIQWLYT-LCASLSRLVVKTALKLLLVFV 230 (339)
T ss_dssp HHCHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHH-HHcCccHHHHHHHHHHHHHHH
Confidence 335666777 555677788777777776664
No 152
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=44.27 E-value=49 Score=33.15 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=31.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHhCC--CCHHHHHHHHHHH-hccCCcch---HHHHHHHHhc
Q 021051 192 RYAALFALRNHGGDEAVSAIIDSLGA--TSALLKHEVAYVL-GQLQNKAA---SAALSDVLRN 248 (318)
Q Consensus 192 r~~a~~~L~~~~~~~~~~~l~~~l~d--~~~~vr~~a~~~L-~~~~~~~~---~~~L~~~l~~ 248 (318)
...+...|.....-... .-+++|.. +++.||..|+..| ..+.+.+. ++.|++.++-
T Consensus 603 ~~e~~~LL~~W~~i~~~-~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALKy 664 (1091)
T 3hhm_A 603 VAQMYCLVKDWPPIKPE-QAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLKY 664 (1091)
T ss_dssp HHHHHHHHHTCCCCCHH-HHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHhcCCCCCHH-HHHHhCcccCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhh
Confidence 34555666655432222 22344432 4678888888888 77777654 4555555543
No 153
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=43.76 E-value=1e+02 Score=23.27 Aligned_cols=93 Identities=13% Similarity=0.004 Sum_probs=49.6
Q ss_pred cHHHHHHHHcCC---CcChHHHHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------CCc
Q 021051 174 SVDMLREVLLGE---EKGMYERYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQL------------QNK 236 (318)
Q Consensus 174 ~~~~L~~~l~~~---~~~~~~r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------~~~ 236 (318)
.+..+++...++ +++...-...+..+..- +..+++..|.+-+++.++.+...|+..|... ...
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~ 92 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKF 92 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSH
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhH
Confidence 456666666553 22221233444444443 2346777777777778888887777777543 123
Q ss_pred chHHHHHHHHhc----cCCCHHHHHHHHHHHhcc
Q 021051 237 AASAALSDVLRN----VNEHPMVRHEAAEALGSI 266 (318)
Q Consensus 237 ~~~~~L~~~l~~----~~~~~~vr~~a~~aL~~~ 266 (318)
+-++.|+.++.. ...++.||..+++.+...
T Consensus 93 ~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W 126 (171)
T 1juq_A 93 RFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSW 126 (171)
T ss_dssp HHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHH
Confidence 344555555542 112456666555544443
No 154
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=41.34 E-value=2.4e+02 Score=27.63 Aligned_cols=244 Identities=9% Similarity=-0.002 Sum_probs=134.2
Q ss_pred CChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCChHHHHHHhccCCCH----HHHHHHHHHHhccCCCCcHHHHHHh
Q 021051 13 SSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGPRDALIRATKDSSN----LLAHEAAFALGQMQDAEAIPALEAV 88 (318)
Q Consensus 13 ~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~~~~L~~~l~d~~~----~vr~~a~~aL~~~~~~~~~~~L~~~ 88 (318)
+++..++.+...|.|+.-+...+..++. + .....|.+.+...|| .+|.....+|+.............+
T Consensus 612 ~~~~~~~~~~~~l~~~~~~~~~~a~~l~----l---p~~~~~~~~~~~~d~~~i~~~r~~~~~~la~~~~~~~~~~~~~~ 684 (891)
T 3b34_A 612 LPVHVADAFRAVLLDEKIDPALAAEILT----L---PSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNAN 684 (891)
T ss_dssp CCHHHHHHHHHHHHCSSSCHHHHHHHTS----C---CCHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhcCCCcCHHHHHHHhc----C---CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5677888899999887643333333221 1 246666766655555 3567777778765442222222222
Q ss_pred hhcC--CCCH------HHHHHHHHHHHhcCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCccccccccCCCC
Q 021051 89 LNDF--SLHP------IVRHEAAEALGAIGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSDGSSMTERSPF 160 (318)
Q Consensus 89 l~~~--~~~~------~vR~~a~~~L~~~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~~~~~l~~~~~ 160 (318)
. .. ..++ .+|..|+..|...++++........+....+-.-+.+|..++.... ...
T Consensus 685 ~-~~~~~~~~~~~~~r~l~n~~l~~l~~~~~~~~~~~~~~~~~~a~nmtd~~~al~~~~~~~---~~~------------ 748 (891)
T 3b34_A 685 Y-QSEYRVEHEDIAKRTLRNACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQ---LPC------------ 748 (891)
T ss_dssp C-CSSCCCSHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTT---CTT------------
T ss_pred c-cCCCCCCHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHhhCCChHHHHHHHHHHhccC---cch------------
Confidence 2 11 1211 3355566666654433334434433656678888888888888654 000
Q ss_pred cccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHhCCC-----CHHHHHHHHHHHhc---
Q 021051 161 MSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSLGAT-----SALLKHEVAYVLGQ--- 232 (318)
Q Consensus 161 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l~d~-----~~~vr~~a~~~L~~--- 232 (318)
.+.++....+..++ ++-+..+.-++.+ ....++.++.+..++.++ +|.-.+..+.++..
T Consensus 749 ----------~~~~l~~f~~~~~~-~~lv~~kwf~~qa--~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~ 815 (891)
T 3b34_A 749 ----------RDALMQEYDDKWHQ-NGLVMDKWFILQA--TSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNP 815 (891)
T ss_dssp ----------HHHHHHHHHHHHTT-CHHHHHHHHHHHH--TCCCTTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCH
T ss_pred ----------HHHHHHHHHHHhcc-CcHHHHHHHHHHh--CCCCccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCc
Confidence 01223333333332 2222223333333 234456788888888765 56666666666643
Q ss_pred --cC--CcchHHHHHHHH---hccCCCHHHHHHHHHHHhccCC--h----hhHHHHHHhhcC--CCHHHHHHHHHHH
Q 021051 233 --LQ--NKAASAALSDVL---RNVNEHPMVRHEAAEALGSIAD--D----QSIGLLKEFAKD--PEPIVSQSCEVAL 294 (318)
Q Consensus 233 --~~--~~~~~~~L~~~l---~~~~~~~~vr~~a~~aL~~~~~--~----~~~~~L~~~l~~--~~~~vr~~a~~aL 294 (318)
++ +......|.+.+ ... ||.|-...+.++.+... + .....|.++... -.+.|+..+..+|
T Consensus 816 ~~fh~~~g~gy~~~~~~~~~l~~~--np~~a~r~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ls~~~~e~~~~~l 890 (891)
T 3b34_A 816 AAFHAEDGSGYLFLVEMLTDLNSR--NPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLENLSGDLYEKITKAL 890 (891)
T ss_dssp HHHTCTTSHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred cccCCCCCcHHHHHHHHHHHhcCc--CHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHhCcCCCccHHHHHHHhh
Confidence 22 334455555544 333 78998888888888862 2 244555565443 4688888877766
No 155
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=41.19 E-value=97 Score=27.12 Aligned_cols=86 Identities=12% Similarity=0.043 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHh----CC-----CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHH
Q 021051 191 ERYAALFALRNHGGDEAVSAIIDSL----GA-----TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAE 261 (318)
Q Consensus 191 ~r~~a~~~L~~~~~~~~~~~l~~~l----~d-----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~ 261 (318)
.|..++..+...|+++++....+.+ .+ -.+.+|.. +.+.+ ++..+..+.|.+.....+ ++..|...+.
T Consensus 199 lR~~~l~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~-Vy~~~-~~~~~~~~~l~~~y~~s~-~~~ek~~ll~ 275 (419)
T 3rjo_A 199 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA-VFAVG-AQSTEGWDFLYSKYQFSL-SSTEKSQIEF 275 (419)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH-HHHHH-TTSHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee-EEeee-eCCHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence 3777778888888877665544433 11 34666653 33333 333556777877776543 7888999999
Q ss_pred HHhccCChhhHHHHHHhh
Q 021051 262 ALGSIADDQSIGLLKEFA 279 (318)
Q Consensus 262 aL~~~~~~~~~~~L~~~l 279 (318)
+||...++..+..++++.
T Consensus 276 aL~~s~d~~ll~~~L~~~ 293 (419)
T 3rjo_A 276 ALCRTQNKEKLQWLLDES 293 (419)
T ss_dssp HHTTCSCHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 999999888777777643
No 156
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=40.95 E-value=1.8e+02 Score=25.32 Aligned_cols=40 Identities=20% Similarity=0.130 Sum_probs=23.7
Q ss_pred HHHHHHHHcCCCcChHHHHHHHHHHHhCCChhHHHHHHHHh
Q 021051 175 VDMLREVLLGEEKGMYERYAALFALRNHGGDEAVSAIIDSL 215 (318)
Q Consensus 175 ~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~~~~~~~l~~~l 215 (318)
...+.+.+...+.. ..|...+.+|+...++..+..+++..
T Consensus 254 ~~~l~~~y~~s~~~-~ek~~ll~aL~~s~d~~ll~~~L~~~ 293 (419)
T 3rjo_A 254 WDFLYSKYQFSLSS-TEKSQIEFALCRTQNKEKLQWLLDES 293 (419)
T ss_dssp HHHHHHHHHHCCCH-HHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 45555555444332 24777777777777776666665543
No 157
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta protein, PIK3C3, compound 15E, structural genomics, SGC stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Probab=40.50 E-value=38 Score=31.63 Aligned_cols=110 Identities=15% Similarity=0.109 Sum_probs=67.2
Q ss_pred hhHHHHHHhhcCCC-CC-HHHHHHHHHHHhcc--CCCChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhc
Q 021051 16 EMEKFLCDRLVDPT-QP-ISERFRALFSLRNL--KGPGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLND 91 (318)
Q Consensus 16 ~~~~~L~~~L~~~~-~~-~~~r~~A~~~l~~~--~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~ 91 (318)
...+.|..++.-+. .. ...-..-++....+ ..+.+.+.+.+..+=.++.-...|...|..+.. -.+..-+++|..
T Consensus 26 ~~r~~L~~I~~~~p~~~Lt~~ek~llWk~R~~l~~~~~aL~kfL~sV~W~~~~e~~~a~~LL~~W~~-i~~~dALELL~~ 104 (614)
T 3ls8_A 26 ATRDQLNIIVSYPPTKQLTYEEQDLVWKFRYYLTNQEKALTKFLKCVNWDLPQEAKQALELLGKWKP-MDVEDSLELLSS 104 (614)
T ss_dssp HHHHHHHHHHHSCTTCCCCHHHHHHHHHTHHHHTTCGGGHHHHHTTCCTTSHHHHHHHHHHHHHSCC-CCHHHHGGGGST
T ss_pred HHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHhhChhHHHHHhccCCCCCHHHHHHHHHHHhhCCC-CCHHHHHHhCcc
Confidence 44556666665322 10 02222344444332 235566666665544556666677888888876 444555677774
Q ss_pred CCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhccCC
Q 021051 92 FSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVSDP 126 (318)
Q Consensus 92 ~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~d~ 126 (318)
.=.++.||..|+..|....+.+ +++.|++++..++
T Consensus 105 ~f~d~~VR~yAV~~L~~~~D~eL~lYLlQLVQALKyE~ 142 (614)
T 3ls8_A 105 HYTNPTVRRYAVARLRQADDEDLLMYLLQLVQALKYEN 142 (614)
T ss_dssp TCCCHHHHHHHHHHHTTSCHHHHHHTHHHHHHHGGGSC
T ss_pred cCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhccc
Confidence 4578999999999999888765 4566777565444
No 158
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=40.09 E-value=37 Score=30.59 Aligned_cols=64 Identities=9% Similarity=0.037 Sum_probs=47.5
Q ss_pred chHHHHHHHHhcc--------CCCHHHHHHHHHHHhccC--C---------hhhHHHHHHhhcCCCHHHHHHHHHHHHhc
Q 021051 237 AASAALSDVLRNV--------NEHPMVRHEAAEALGSIA--D---------DQSIGLLKEFAKDPEPIVSQSCEVALSML 297 (318)
Q Consensus 237 ~~~~~L~~~l~~~--------~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~l 297 (318)
+.+..|.+++... +.|+.+-.-|+.-+|.+- . -++...+.+++..+++.||.+|..|++++
T Consensus 395 ~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQkl 474 (480)
T 1ho8_A 395 KIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI 474 (480)
T ss_dssp HHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4678888888631 126777777888888763 1 13566677889999999999999999987
Q ss_pred hhh
Q 021051 298 EYE 300 (318)
Q Consensus 298 ~~~ 300 (318)
-.+
T Consensus 475 m~~ 477 (480)
T 1ho8_A 475 IGY 477 (480)
T ss_dssp HHH
T ss_pred HHh
Confidence 644
No 159
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=38.93 E-value=1.4e+02 Score=23.45 Aligned_cols=71 Identities=17% Similarity=0.153 Sum_probs=39.8
Q ss_pred HHHHHHHHHhC--CChhHHHHHHHHhCCCCHHHHHHHHHHHhcc------------CCcchHHHHHHHHhccCCCHHHHH
Q 021051 192 RYAALFALRNH--GGDEAVSAIIDSLGATSALLKHEVAYVLGQL------------QNKAASAALSDVLRNVNEHPMVRH 257 (318)
Q Consensus 192 r~~a~~~L~~~--~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~~------------~~~~~~~~L~~~l~~~~~~~~vr~ 257 (318)
-......+..- +..+++..|.+-+++.++.+...|+..|..+ ...+-++.|..++.+. .++.||.
T Consensus 26 ~leicd~i~~~~~~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~-~~~~Vk~ 104 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLEST-PHENVRQ 104 (220)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHC-SCHHHHH
T ss_pred HHHHHHhhcCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCC-CcHHHHH
Confidence 33344444432 3356777777777778888887777777643 1233445555555442 2556665
Q ss_pred HHHHHH
Q 021051 258 EAAEAL 263 (318)
Q Consensus 258 ~a~~aL 263 (318)
.+++.+
T Consensus 105 kil~li 110 (220)
T 1dvp_A 105 KMLELV 110 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 160
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=38.48 E-value=65 Score=32.32 Aligned_cols=77 Identities=16% Similarity=0.025 Sum_probs=45.9
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHH-HhcCCCC---cHHHHHhhhc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEAL-GAIGLES---NIPLLKNSLV 123 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L-~~~~~~~---~~~~L~~~l~ 123 (318)
+++.+.+....+=.++.-...+...|..+.. -.+..-+++|...=+|+.||..|++.| ....+.+ .++.|++++.
T Consensus 585 p~aL~k~L~sV~W~~~~e~~e~~~LL~~W~~-i~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~~ddeLl~YLlQLVQALK 663 (1091)
T 3hhm_A 585 PEILPKLLLSVKWNSRDEVAQMYCLVKDWPP-IKPEQAMELLDCNYPDPMVRGFAVRCLEKYLTDDKLSQYLIQLVQVLK 663 (1091)
T ss_dssp GGGHHHHHTTSCTTCHHHHHHHHHHHHTCCC-CCHHHHHHTTSTTCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHheeCCCCCHHHHHHHHHHHhcCCC-CCHHHHHHhCcccCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 4566666655544455444566777776655 344444556663346788888888888 7666544 3556666554
Q ss_pred cC
Q 021051 124 SD 125 (318)
Q Consensus 124 ~d 125 (318)
.+
T Consensus 664 yE 665 (1091)
T 3hhm_A 664 YE 665 (1091)
T ss_dssp GC
T ss_pred hc
Confidence 43
No 161
>2x6h_A GH13170P, VPS34, phosphotidylinositol 3 kinase 59F; transferase; 2.90A {Drosophila melanogaster} PDB: 2x6f_A 2x6i_A* 2x6j_A* 2x6k_A*
Probab=38.17 E-value=80 Score=29.97 Aligned_cols=77 Identities=16% Similarity=0.117 Sum_probs=45.2
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS 124 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~ 124 (318)
+++.+.+++.++=.++.-...|...|..+.... +..-+++|...=.++.||..|++.|....+.+ +++.|++++..
T Consensus 76 ~~aL~kfL~sv~W~~~~e~~~a~~lL~~W~~~~-~~dALeLL~~~f~~~~VR~yAV~~L~~~~de~L~~YLlQLVQALKy 154 (696)
T 2x6h_A 76 KKALTKFLKCINWKLEDEVTQALWMLANWAPMD-VEDALELLSPTFTHPQVRKYAVSRLAQAPDEDLLLYLLQLVQALKY 154 (696)
T ss_dssp HHHHHHHGGGTTTSCHHHHHHHHHHHHHSCCCC-HHHHHHHHSTTCCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGG
T ss_pred hhHHHHHHhhCCCCCHHHHHHHHHHHhcCCCCC-HHHHHHHhcccCCCHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHh
Confidence 334444444443345555566677777776533 44445566533367888888888888876654 35666665544
Q ss_pred C
Q 021051 125 D 125 (318)
Q Consensus 125 d 125 (318)
+
T Consensus 155 E 155 (696)
T 2x6h_A 155 E 155 (696)
T ss_dssp S
T ss_pred c
Confidence 4
No 162
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=36.05 E-value=16 Score=32.93 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=7.2
Q ss_pred hhHHHHHHhhc
Q 021051 16 EMEKFLCDRLV 26 (318)
Q Consensus 16 ~~~~~L~~~L~ 26 (318)
+.+..|+++|+
T Consensus 395 ~llk~L~~iL~ 405 (480)
T 1ho8_A 395 KIFRQLIELLQ 405 (480)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 45666777776
No 163
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=35.96 E-value=92 Score=30.76 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHhccCCc
Q 021051 219 SALLKHEVAYVLGQLQNK 236 (318)
Q Consensus 219 ~~~vr~~a~~~L~~~~~~ 236 (318)
++.||..|+..|..+.+.
T Consensus 485 d~~Vr~yAv~~L~~~~d~ 502 (940)
T 2wxf_A 485 DCYVGSFAIKSLRKLTDD 502 (940)
T ss_dssp CHHHHHHHHHHHTTCCHH
T ss_pred CHHHHHHHHHHHHhCCHH
Confidence 445555555555554443
No 164
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=35.58 E-value=89 Score=31.42 Aligned_cols=77 Identities=16% Similarity=-0.013 Sum_probs=48.6
Q ss_pred CChHHHHHHhccCCCHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHHhhhcc
Q 021051 48 PGPRDALIRATKDSSNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLKNSLVS 124 (318)
Q Consensus 48 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~~~l~~ 124 (318)
+++.+.+....+-.++.-...+...|..+.. -....-+++|...=+++.||..|++.|....+.+ .++.|++++..
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~-i~p~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~yLpQLVQaLky 670 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPK-LPPREALELLDFNYPDQYVREYAVGCLRQMSDEELSQYLLQLVQVLKY 670 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCC-CCHHHHGGGGSTTCCCTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHccCCC-CCHHHHHHhcCccCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 5667777666655555555566666776655 3444456666643467888888888888776543 35666665544
Q ss_pred C
Q 021051 125 D 125 (318)
Q Consensus 125 d 125 (318)
+
T Consensus 671 E 671 (1092)
T 2y3a_A 671 E 671 (1092)
T ss_dssp C
T ss_pred c
Confidence 4
No 165
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=35.48 E-value=1.3e+02 Score=22.20 Aligned_cols=57 Identities=7% Similarity=-0.077 Sum_probs=36.7
Q ss_pred HHHHHHhhcCC---CCCHHHHHHHHHHHhccC--CCChHHHHHHhcc-CCCHHHHHHHHHHHh
Q 021051 18 EKFLCDRLVDP---TQPISERFRALFSLRNLK--GPGPRDALIRATK-DSSNLLAHEAAFALG 74 (318)
Q Consensus 18 ~~~L~~~L~~~---~~~~~~r~~A~~~l~~~~--~~~~~~~L~~~l~-d~~~~vr~~a~~aL~ 74 (318)
+..+++-..++ ++||..-...+..+..-. ..+++..|.+.++ +.++.++..|+..|.
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~~~~k~a~ral~krl~~~~n~~v~l~AL~LLd 79 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETEEGPKDALRAVKKRIVGNKNFHEVMLALTVLE 79 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 44444444432 246777777777765532 2467778888887 478888888887764
No 166
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=34.76 E-value=40 Score=26.33 Aligned_cols=61 Identities=11% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhccCC----------cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChh----hHHHHHHhhcC
Q 021051 221 LLKHEVAYVLGQLQN----------KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQ----SIGLLKEFAKD 281 (318)
Q Consensus 221 ~vr~~a~~~L~~~~~----------~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~----~~~~L~~~l~~ 281 (318)
.+|..|+..++.+.. +.....+.+.+.|++.+....+.|+.+|..+|... .+|.+....++
T Consensus 105 ~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG~~~vr~~llP~l~~~~~~ 179 (196)
T 4atg_A 105 DVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILSKNVVNTVIREHAEEYKRT 179 (196)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhHHHHHHHhhhcCHHHHHHH
Confidence 677777777776531 33455666666666557899999999999999753 23444444443
No 167
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase, gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma acidophilum} PDB: 1z1w_A 3q7j_A*
Probab=34.64 E-value=3.2e+02 Score=26.26 Aligned_cols=85 Identities=9% Similarity=0.075 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccC
Q 021051 191 ERYAALFALRNHGGDEAVSAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIA 267 (318)
Q Consensus 191 ~r~~a~~~L~~~~~~~~~~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~ 267 (318)
.|..++..+...+.++++. ..+.+. .-++.+|..+.....+.++. ...|.+.....+ +..-|..++.+|+...
T Consensus 588 ~r~~~~~~a~~~~~~~~~~-a~~~f~~~~~i~~~lr~~v~~~~~~~g~~--~~~l~~~~~~~~-~~~~~~~~l~al~~~~ 663 (780)
T 1z5h_A 588 ALGRVSRLYVMVDESYAEE-MSKLFKDFDSAEPEMRSSIATAYALVTGD--LKGLLEKFRSVD-RDEDRVRIISAFGKLK 663 (780)
T ss_dssp HHHHHHHHHHHHCHHHHHH-HHTTGGGGGGSCHHHHHHHHHHHHHHTCC--HHHHHHHHHSCC-SHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHHcCcH--HHHHHHHHhcCC-CHHHHHHHHHHhccCC
Confidence 4667777778888888887 666553 34788887665555455554 777887777643 7889999999999999
Q ss_pred ChhhHHHHHHhh
Q 021051 268 DDQSIGLLKEFA 279 (318)
Q Consensus 268 ~~~~~~~L~~~l 279 (318)
++..+..+.+..
T Consensus 664 ~~~~~~~~l~~~ 675 (780)
T 1z5h_A 664 SNTDLSTVYGMV 675 (780)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 988877766643
No 168
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=34.29 E-value=1.1e+02 Score=30.27 Aligned_cols=80 Identities=15% Similarity=0.101 Sum_probs=53.5
Q ss_pred CCChHHHHHHhccCCCHHHHHHHHHHHhc---cC-CCCcHHHHHHhhhcCCCCHHHHHHHHHHHHhcCCCC---cHHHHH
Q 021051 47 GPGPRDALIRATKDSSNLLAHEAAFALGQ---MQ-DAEAIPALEAVLNDFSLHPIVRHEAAEALGAIGLES---NIPLLK 119 (318)
Q Consensus 47 ~~~~~~~L~~~l~d~~~~vr~~a~~aL~~---~~-~~~~~~~L~~~l~~~~~~~~vR~~a~~~L~~~~~~~---~~~~L~ 119 (318)
.+.+.+.+....+=.++.-...+...|.. +. ..-.+..-+++|...=+++.||..|++.|..+.+.+ +++.|+
T Consensus 444 ~p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~YL~QLV 523 (961)
T 1e7u_A 444 DPKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHYLLQLV 523 (961)
T ss_dssp CGGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CcHHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46677777766665666666677777777 53 223345566677644468899999999998877644 467777
Q ss_pred hhhccCC
Q 021051 120 NSLVSDP 126 (318)
Q Consensus 120 ~~l~~d~ 126 (318)
+++..|+
T Consensus 524 QaLkyE~ 530 (961)
T 1e7u_A 524 QAVKFEP 530 (961)
T ss_dssp HHGGGCS
T ss_pred HHHhhcc
Confidence 7665443
No 169
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=33.06 E-value=90 Score=22.81 Aligned_cols=62 Identities=18% Similarity=0.177 Sum_probs=32.4
Q ss_pred chHHHHHHHHhccCCCHHHHHHHHHHHhcc---CChhhH----------HHHHHhh--cC------CCHHHHHHHHHHHH
Q 021051 237 AASAALSDVLRNVNEHPMVRHEAAEALGSI---ADDQSI----------GLLKEFA--KD------PEPIVSQSCEVALS 295 (318)
Q Consensus 237 ~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~---~~~~~~----------~~L~~~l--~~------~~~~vr~~a~~aL~ 295 (318)
+.++.|.+.+.+. ++.+++.+++.|.-+ |.+..+ ..|..+- .+ ....||..|...+.
T Consensus 49 eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ 126 (140)
T 1vdy_A 49 EFSEFILKRLDNK--SPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETIS 126 (140)
T ss_dssp HHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--CcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHH
Confidence 4556666666665 566666666555443 232222 2222211 11 11678888887777
Q ss_pred hchhh
Q 021051 296 MLEYE 300 (318)
Q Consensus 296 ~l~~~ 300 (318)
.|...
T Consensus 127 ll~d~ 131 (140)
T 1vdy_A 127 AIFSE 131 (140)
T ss_dssp HHTCC
T ss_pred HHhCc
Confidence 66543
No 170
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=31.77 E-value=2e+02 Score=23.11 Aligned_cols=127 Identities=11% Similarity=0.049 Sum_probs=75.4
Q ss_pred cHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-hhHHHHHHHHhC-CCCHHHHH-HHHHHH-hccCCcchHHHHHHHHhcc
Q 021051 174 SVDMLREVLLGEEKGMYERYAALFALRNHGG-DEAVSAIIDSLG-ATSALLKH-EVAYVL-GQLQNKAASAALSDVLRNV 249 (318)
Q Consensus 174 ~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-~~~~~~l~~~l~-d~~~~vr~-~a~~~L-~~~~~~~~~~~L~~~l~~~ 249 (318)
+...+.+.+.........+.....++...|. .+++..+.+++. +++..... .+...+ ..-....++..+.+.+...
T Consensus 136 A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~ 215 (287)
T 3qou_A 136 ALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN 215 (287)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC
Confidence 4555555554322222245555555556665 455555555543 33433222 222222 2233455788888888765
Q ss_pred CCCHHHHHHHHHHHhccCCh-hhHHHHHHhhc-CCC---HHHHHHHHHHHHhchhh
Q 021051 250 NEHPMVRHEAAEALGSIADD-QSIGLLKEFAK-DPE---PIVSQSCEVALSMLEYE 300 (318)
Q Consensus 250 ~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~-~~~---~~vr~~a~~aL~~l~~~ 300 (318)
++++..+...+..+...|+. +++..+.+++. +++ ...+......+..++..
T Consensus 216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 66899999999999988864 58888888765 332 56777777777766653
No 171
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=30.83 E-value=95 Score=30.75 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=39.5
Q ss_pred CChhHHHHHHHHhCCCCHHHHHHHHHHHhc---cCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhhHHH
Q 021051 203 GGDEAVSAIIDSLGATSALLKHEVAYVLGQ---LQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQSIGL 274 (318)
Q Consensus 203 ~~~~~~~~l~~~l~d~~~~vr~~a~~~L~~---~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~~~~ 274 (318)
..+.+++.+....+=.++.-..++...|.. +.. +-....-+++|...=.++.||.-|++.|..+.+++..-+
T Consensus 443 ~~p~aL~k~l~sv~w~~~~~v~e~~~lL~~~~~W~~~~~~~~~ALeLL~~~f~d~~VR~yAV~~L~~~~d~~l~~Y 518 (961)
T 1e7u_A 443 KDPKAYPKLFSSVKWGQQEIVAKTYQLLAKREVWDQSALDVGLTMQLLDCNFSDENVRAIAVQKLESLEDDDVLHY 518 (961)
T ss_dssp TCGGGHHHHHTSSCTTCHHHHHHHHHHHHCCHHHHHSCCCHHHHHHTTSTTCCCHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hCcHHHHHHheecCCCCHHHHHHHHHHHhccCCCCCCCCCHHHHHHhcCCcCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 345666666665555555555666666766 531 111222333443222367777777777777766654333
No 172
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=30.63 E-value=2.9e+02 Score=27.04 Aligned_cols=85 Identities=12% Similarity=0.043 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHh----CC-----CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHH
Q 021051 191 ERYAALFALRNHGGDEAVSAIIDSL----GA-----TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAE 261 (318)
Q Consensus 191 ~r~~a~~~L~~~~~~~~~~~l~~~l----~d-----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~ 261 (318)
.|..++..+..+|.++++..-.+.+ .+ -.+.+|. .+.+.|- ++.+....+.+.....+ +...|...+.
T Consensus 682 lr~~~~~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~~lr~-~vy~~~~-g~~~~~~~l~~~y~~~~-~~~ek~~ll~ 758 (897)
T 2xdt_A 682 LRSQLLLLACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTL-AVFAVGA-QSTEGWDFLYSKYQFSL-SSTEKSQIEF 758 (897)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH-HHHHHHT-TSHHHHHHHHHHHTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcCCCCcchhh-hEEEEec-CCHHHHHHHHHHHHccC-CHHHHHHHHH
Confidence 4777888888888887775544333 22 2577775 4444443 77777888888887643 7889999999
Q ss_pred HHhccCChhhHHHHHHh
Q 021051 262 ALGSIADDQSIGLLKEF 278 (318)
Q Consensus 262 aL~~~~~~~~~~~L~~~ 278 (318)
+||...++..+..+++.
T Consensus 759 aL~c~~~~~~l~~~L~~ 775 (897)
T 2xdt_A 759 ALCRTQNKEKLQWLLDE 775 (897)
T ss_dssp HHTTCCCHHHHHHHHHH
T ss_pred HhccCCCHHHHHHHHHH
Confidence 99999999877776664
No 173
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG MES MAN; 3.08A {Homo sapiens} PDB: 4e36_A*
Probab=29.12 E-value=2e+02 Score=28.49 Aligned_cols=86 Identities=14% Similarity=0.089 Sum_probs=60.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHh----CC-----CCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHH
Q 021051 191 ERYAALFALRNHGGDEAVSAIIDSL----GA-----TSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAE 261 (318)
Q Consensus 191 ~r~~a~~~L~~~~~~~~~~~l~~~l----~d-----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~ 261 (318)
.|..++......|.++++..-.+.+ .+ -.+.+|. .+.+.| ++..+....+.+.....+ +...|...+.
T Consensus 750 lR~~il~~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~~lr~-~Vyc~~-~~~~~~~~~l~~~y~~s~-~~~ek~~ll~ 826 (967)
T 3se6_A 750 LRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLK-IVYSVG-AQTTAGWNYLLEQYELSM-SSAEQNKILY 826 (967)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCHHHHH-HHHHHH-TTSHHHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhhcCCCcccCChhhhh-HhHhhh-hccHHHHHHHHHHHhccC-CHHHHHHHHH
Confidence 4777788888888877776544433 22 3577776 444444 344666778888777643 7889999999
Q ss_pred HHhccCChhhHHHHHHhh
Q 021051 262 ALGSIADDQSIGLLKEFA 279 (318)
Q Consensus 262 aL~~~~~~~~~~~L~~~l 279 (318)
+||...++..+..+++..
T Consensus 827 aL~ct~d~~ll~~~L~~~ 844 (967)
T 3se6_A 827 ALSTSKHQEKLLKLIELG 844 (967)
T ss_dssp HHTTCCCHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHH
Confidence 999999998877777643
No 174
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=27.72 E-value=1.1e+02 Score=30.84 Aligned_cols=66 Identities=14% Similarity=0.109 Sum_probs=33.3
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccCCCHHHHHHHHHHHhccCChhh
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVNEHPMVRHEAAEALGSIADDQS 271 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~~~ 271 (318)
+.+++.+.....=.++.-..++...|..+..-+.... +++|...-.++.||.-|++.|..+.+++.
T Consensus 592 p~aL~k~l~sv~w~~~~e~~e~~~lL~~W~~i~p~~A-LeLL~~~f~d~~VR~yAV~~L~~~~d~~l 657 (1092)
T 2y3a_A 592 PQSLPKLLLSIKWNKLEDVAQLQALLQIWPKLPPREA-LELLDFNYPDQYVREYAVGCLRQMSDEEL 657 (1092)
T ss_dssp GGGHHHHHHHSCTTCHHHHHHHHHHHHTSCCCCHHHH-GGGGSTTCCCTTHHHHHHHHHHSSCHHHH
T ss_pred cHHHHHHHhhcCCCCHHHHHHHHHHHccCCCCCHHHH-HHhcCccCCCHHHHHHHHHHHHcCCHHHH
Confidence 3455555555544444444555566665554333222 33332212256666666666666655543
No 175
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=27.21 E-value=4.5e+02 Score=25.73 Aligned_cols=222 Identities=14% Similarity=0.081 Sum_probs=115.4
Q ss_pred ChHHHHHHhccCC--CHHHHHHHHHHHhccCCCCcHHHHHHhhhcCCCCH--HHHHHHHHHHHhcCCCCcHHHHHhhhcc
Q 021051 49 GPRDALIRATKDS--SNLLAHEAAFALGQMQDAEAIPALEAVLNDFSLHP--IVRHEAAEALGAIGLESNIPLLKNSLVS 124 (318)
Q Consensus 49 ~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~~--~vR~~a~~~L~~~~~~~~~~~L~~~l~~ 124 (318)
..++.+...|.|+ ++..+..++. -.....|.+.+...|++. .+|......|+.-..........+ +..
T Consensus 615 ~~~~~~~~~l~~~~~~~~~~a~~l~-------lp~~~~~~~~~~~~d~~~i~~~r~~~~~~la~~~~~~~~~~~~~-~~~ 686 (891)
T 3b34_A 615 HVADAFRAVLLDEKIDPALAAEILT-------LPSVNEMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNA-NYQ 686 (891)
T ss_dssp HHHHHHHHHHHCSSSCHHHHHHHTS-------CCCHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-TCC
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHhc-------CCCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcc
Confidence 4677777777654 5555554432 245677777776323333 557777888876654444554544 321
Q ss_pred C-CCHHHHHHHHHHHHHHHh-hhccCccccccccCCCCcccCCCCCCCCCccHHHHHHHHcCCCcChHHHHHHHHHHHhC
Q 021051 125 D-PAQEVRETCELALERIEK-LKASGSDGSSMTERSPFMSVDPAAPASSCSSVDMLREVLLGEEKGMYERYAALFALRNH 202 (318)
Q Consensus 125 d-~~~~vr~~a~~aL~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~ 202 (318)
. ..+.....+.++|.+..- +.... + ++.......+.+.+. ..+..|.+|+.++...
T Consensus 687 ~~~~~~~~~~~~r~l~n~~l~~l~~~---------------~------~~~~~~~~~~~~~~a-~nmtd~~~al~~~~~~ 744 (891)
T 3b34_A 687 SEYRVEHEDIAKRTLRNACLRFLAFG---------------E------THLADVLVSKQFHEA-NNMTDALAALSAAVAA 744 (891)
T ss_dssp SSCCCSHHHHHHHHHHHHHHHHHHTS---------------C------HHHHHHHHHHHHHHC-SSHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhC---------------C------CchHHHHHHHHHhhC-CChHHHHHHHHHHhcc
Confidence 1 123333344444444330 00000 0 011233344444332 3455699999999876
Q ss_pred CCh---hHHHHHHHHhCCCCHHHHHHHHHHHhccCCcchHHHHHHHHhccC---CCHHHHHHHHHHHhc-----cC--Ch
Q 021051 203 GGD---EAVSAIIDSLGATSALLKHEVAYVLGQLQNKAASAALSDVLRNVN---EHPMVRHEAAEALGS-----IA--DD 269 (318)
Q Consensus 203 ~~~---~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~~~~---~~~~vr~~a~~aL~~-----~~--~~ 269 (318)
... .++..+.+-.+ .++.|--.=...-+....++.++.+..+++++. .+|+--++.+-++.. +. +-
T Consensus 745 ~~~~~~~~l~~f~~~~~-~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~~g 823 (891)
T 3b34_A 745 QLPCRDALMQEYDDKWH-QNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDG 823 (891)
T ss_dssp TCTTHHHHHHHHHHHHT-TCHHHHHHHHHHHHTCCCTTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTS
T ss_pred CcchHHHHHHHHHHHhc-cCcHHHHHHHHHHhCCCCccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCCCC
Confidence 433 34444444444 355554433444445556778889999888753 356666666666644 11 11
Q ss_pred hhHHHHHHh---hcCCCHHHHHHHHHHHHhchhhh
Q 021051 270 QSIGLLKEF---AKDPEPIVSQSCEVALSMLEYEQ 301 (318)
Q Consensus 270 ~~~~~L~~~---l~~~~~~vr~~a~~aL~~l~~~~ 301 (318)
..-.+|.+. ++.-+|+|....+.++.+++.-.
T Consensus 824 ~gy~~~~~~~~~l~~~np~~a~r~~~~~~~~~~~~ 858 (891)
T 3b34_A 824 SGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYD 858 (891)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHTGGGSC
T ss_pred cHHHHHHHHHHHhcCcCHHHHHHHHHHHhhhhhcC
Confidence 123333332 34456777666666666665543
No 176
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=26.98 E-value=1.9e+02 Score=21.33 Aligned_cols=15 Identities=13% Similarity=0.069 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHhch
Q 021051 284 PIVSQSCEVALSMLE 298 (318)
Q Consensus 284 ~~vr~~a~~aL~~l~ 298 (318)
..||..+..-+..+.
T Consensus 115 ~~Vk~kil~li~~W~ 129 (157)
T 1elk_A 115 TIVHDKVLNLIQSWA 129 (157)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455555555554443
No 177
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=23.66 E-value=5.2e+02 Score=25.20 Aligned_cols=131 Identities=21% Similarity=0.126 Sum_probs=82.8
Q ss_pred ccCChhhHHHHHHhhcCCCCCHHHHHHHHHHHhccCCCCh------HH-HHHHhcc-C--CCHHHHHHHHHHHhccCCCC
Q 021051 11 FKSSPEMEKFLCDRLVDPTQPISERFRALFSLRNLKGPGP------RD-ALIRATK-D--SSNLLAHEAAFALGQMQDAE 80 (318)
Q Consensus 11 ~~~~~~~~~~L~~~L~~~~~~~~~r~~A~~~l~~~~~~~~------~~-~L~~~l~-d--~~~~vr~~a~~aL~~~~~~~ 80 (318)
..++.+.+..|+++|+++.. ..+...+..|...-.|.. .. .|.+... . ....-+..|...||.+...-
T Consensus 20 ~pl~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~rv~pg~~~aa~vKA~fL~~i~~~~~~~~~i~~~~a~~lLg~m~gG~ 97 (865)
T 1l5j_A 20 KPLDANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGY 97 (865)
T ss_dssp CCCCHHHHHHHHHHHHSCCT--TCHHHHHHHHHHSSCCTTCHHHHHHHHHHHHHHTTSSCBTTBCHHHHHHHHTTSCSST
T ss_pred CCCCHHHHHHHHHHhcCCCc--ccHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccCCccCHHHHHHhcccCCCCC
Confidence 34778899999999998875 567777888877655541 11 1112221 1 12334678999999998888
Q ss_pred cHHHHHHhhhcCCCCHHHHHHHHHHHHh-cCCCCcHHHHHhhhccCCCHHHHHHHHHHHHHHHhhhccCcc
Q 021051 81 AIPALEAVLNDFSLHPIVRHEAAEALGA-IGLESNIPLLKNSLVSDPAQEVRETCELALERIEKLKASGSD 150 (318)
Q Consensus 81 ~~~~L~~~l~~~~~~~~vR~~a~~~L~~-~~~~~~~~~L~~~l~~d~~~~vr~~a~~aL~~~~~~~~~~~~ 150 (318)
.+..|.+++. +..+...|..+|.+ +--.+....+.. ..+..++.-+ ..+.+.+.-. |....+.
T Consensus 98 nv~~L~d~~~----~~~~a~~a~~~l~~~~l~~d~f~~v~~-~~~~gn~~a~-~vl~swa~ae-~Ft~~p~ 161 (865)
T 1l5j_A 98 NIHPLIDALD----DAKLAPIAAKALSHTLLMFDNFYDVEE-KAKAGNEYAK-QVMQSWADAE-WFLNRPA 161 (865)
T ss_dssp THHHHHHGGG----CTTTHHHHHHHHHTCCTTTTHHHHHHH-HHHTTCHHHH-HHHHHHHTTH-HHHTSCC
T ss_pred chHHHHHHhC----chhhHHHHHHHHHhhhccHHHHHHHHH-HHhccCHHHH-HHHHhccccc-ccccCCC
Confidence 9999999996 44566788888987 334555666666 4445455433 3344444333 4444444
No 178
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=23.19 E-value=1.9e+02 Score=19.97 Aligned_cols=96 Identities=13% Similarity=-0.043 Sum_probs=63.4
Q ss_pred hhHHHHHHHHh--CCCCHHHHHHHHHHHhccCC-cchHHHHHHHHhccCCCHHHHHHHHHHHhccCCh-hhHHHHHHhhc
Q 021051 205 DEAVSAIIDSL--GATSALLKHEVAYVLGQLQN-KAASAALSDVLRNVNEHPMVRHEAAEALGSIADD-QSIGLLKEFAK 280 (318)
Q Consensus 205 ~~~~~~l~~~l--~d~~~~vr~~a~~~L~~~~~-~~~~~~L~~~l~~~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~ 280 (318)
.+++..+..++ ...++........++...++ .+++..+...+.-.++++........++...|+. +++..+.+.+.
T Consensus 35 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55666666655 33456665555566666665 4677888887765555888888888888888864 47777776543
Q ss_pred -C-C---CHHHHHHHHHHHHhchhh
Q 021051 281 -D-P---EPIVSQSCEVALSMLEYE 300 (318)
Q Consensus 281 -~-~---~~~vr~~a~~aL~~l~~~ 300 (318)
+ . ...++..+...+..++..
T Consensus 115 ~~p~~~~~~~~~~~~~~~l~~l~~~ 139 (142)
T 2xcb_A 115 LAAAQPAHEALAARAGAMLEAVTAR 139 (142)
T ss_dssp HHHTCGGGHHHHHHHHHHHHHHHHH
T ss_pred hCCCCcchHHHHHHHHHHHHHHHhc
Confidence 1 1 355667777777776654
No 179
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=21.43 E-value=2.3e+02 Score=20.26 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=69.0
Q ss_pred ccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC-hhHHHHHHHHhC--CCCHHHHHHHHHH-HhccCC---cchHHHHHHH
Q 021051 173 SSVDMLREVLLGEEKGMYERYAALFALRNHGG-DEAVSAIIDSLG--ATSALLKHEVAYV-LGQLQN---KAASAALSDV 245 (318)
Q Consensus 173 ~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~-~~~~~~l~~~l~--d~~~~vr~~a~~~-L~~~~~---~~~~~~L~~~ 245 (318)
+++..+.+.+....................++ ..++..+.+++. ..++.+......+ ....+. ..+...+...
T Consensus 28 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a 107 (177)
T 2e2e_A 28 AQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA 107 (177)
T ss_dssp CCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 44555655554332222223333334444444 456666666552 3455555555555 334454 6788888888
Q ss_pred HhccCCCHHHHHHHHHHHhccCC-hhhHHHHHHhhc-CCCHHHHHHHHHHHHh
Q 021051 246 LRNVNEHPMVRHEAAEALGSIAD-DQSIGLLKEFAK-DPEPIVSQSCEVALSM 296 (318)
Q Consensus 246 l~~~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~-~~~~~vr~~a~~aL~~ 296 (318)
+...+.++.+....+..+...|+ ..++..+.+++. +++..-+......+.+
T Consensus 108 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~ 160 (177)
T 2e2e_A 108 LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160 (177)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence 87555577887777777777776 457788877654 3332223344444443
No 180
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=20.88 E-value=2.5e+02 Score=20.43 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=25.6
Q ss_pred hhHHHHHHHHhCCCCHHHHHHHHHHHhccCCcch
Q 021051 205 DEAVSAIIDSLGATSALLKHEVAYVLGQLQNKAA 238 (318)
Q Consensus 205 ~~~~~~l~~~l~d~~~~vr~~a~~~L~~~~~~~~ 238 (318)
.+.++.|.+-|++.++.++..++.+|..+.....
T Consensus 48 ~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs 81 (140)
T 1vdy_A 48 KEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSG 81 (140)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCC
Confidence 4566777778888888898888888887654433
No 181
>1l5j_A Aconitate hydratase 2; molecular recognition, RNA binding, citric acid cycle, heat- like domain, lyase; HET: TRA; 2.40A {Escherichia coli} SCOP: a.118.15.1 c.8.2.1 c.83.1.1
Probab=20.66 E-value=4.8e+02 Score=25.40 Aligned_cols=108 Identities=22% Similarity=0.134 Sum_probs=69.9
Q ss_pred CccHHHHHHHHcCCCcChHHHHHHHHHHHhCCC---hhHH----HHHHHHhC---CCCHHHHHHHHHHHhccCCcchHHH
Q 021051 172 CSSVDMLREVLLGEEKGMYERYAALFALRNHGG---DEAV----SAIIDSLG---ATSALLKHEVAYVLGQLQNKAASAA 241 (318)
Q Consensus 172 ~~~~~~L~~~l~~~~~~~~~r~~a~~~L~~~~~---~~~~----~~l~~~l~---d~~~~vr~~a~~~L~~~~~~~~~~~ 241 (318)
.+....|+++|+++.... +...+..+.+--. .++. ..|..... ....--+..|+..||.|.....+..
T Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~rv~pg~~~aa~vKA~fL~~i~~~~~~~~~i~~~~a~~lLg~m~gG~nv~~ 101 (865)
T 1l5j_A 24 ANQMAALVELLKNPPAGE--EEFLLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHP 101 (865)
T ss_dssp HHHHHHHHHHHHSCCTTC--HHHHHHHHHHSSCCTTCHHHHHHHHHHHHHHTTSSCBTTBCHHHHHHHHTTSCSSTTHHH
T ss_pred HHHHHHHHHHhcCCCccc--HHHHHHHHHcCCCCCCChHHHHHHHHHHHHHhCcccCCccCHHHHHHhcccCCCCCchHH
Confidence 556788999998776553 6667777765422 2111 12222221 1122235679999999999889999
Q ss_pred HHHHHhccCCCHHHHHHHHHHHhcc-CChhhHHHHHHhhcCCCHH
Q 021051 242 LSDVLRNVNEHPMVRHEAAEALGSI-ADDQSIGLLKEFAKDPEPI 285 (318)
Q Consensus 242 L~~~l~~~~~~~~vr~~a~~aL~~~-~~~~~~~~L~~~l~~~~~~ 285 (318)
|++++. +.++...|+++|... =-.++..-+.+..+..++.
T Consensus 102 L~d~~~----~~~~a~~a~~~l~~~~l~~d~f~~v~~~~~~gn~~ 142 (865)
T 1l5j_A 102 LIDALD----DAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEY 142 (865)
T ss_dssp HHHGGG----CTTTHHHHHHHHHTCCTTTTHHHHHHHHHHTTCHH
T ss_pred HHHHhC----chhhHHHHHHHHHhhhccHHHHHHHHHHHhccCHH
Confidence 999994 467888999999883 2234566666666666654
Done!