Query 021052
Match_columns 318
No_of_seqs 188 out of 1354
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 07:14:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/021052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02521 galactokinase 100.0 1.3E-60 2.9E-65 475.5 26.0 298 13-317 148-445 (497)
2 COG0153 GalK Galactokinase [Ca 100.0 5.4E-60 1.2E-64 448.6 20.9 244 1-316 99-348 (390)
3 PLN02865 galactokinase 100.0 2.4E-54 5.3E-59 422.5 21.8 247 2-316 114-375 (423)
4 PTZ00290 galactokinase; Provis 100.0 9.1E-54 2E-58 422.4 20.3 257 11-317 131-416 (468)
5 PRK05322 galactokinase; Provis 100.0 2.3E-50 5E-55 392.8 21.8 233 13-316 111-346 (387)
6 PRK05101 galactokinase; Provis 100.0 2.5E-49 5.4E-54 385.0 24.0 230 12-317 110-342 (382)
7 TIGR00131 gal_kin galactokinas 100.0 2E-48 4.3E-53 379.3 21.3 235 13-317 109-346 (386)
8 PRK00555 galactokinase; Provis 100.0 2.1E-48 4.5E-53 376.2 20.1 231 11-317 88-322 (363)
9 KOG0631 Galactokinase [Carbohy 100.0 1.1E-46 2.4E-51 363.3 13.9 288 13-316 141-439 (489)
10 PRK03817 galactokinase; Provis 100.0 4.6E-42 1E-46 330.6 24.1 227 11-317 83-310 (351)
11 COG1577 ERG12 Mevalonate kinas 100.0 7E-33 1.5E-37 260.4 22.8 197 11-317 80-277 (307)
12 TIGR00549 mevalon_kin mevalona 100.0 8.1E-33 1.7E-37 256.9 18.2 194 13-316 77-271 (273)
13 PLN02677 mevalonate kinase 100.0 1.4E-31 3.1E-36 259.9 18.5 200 11-317 126-344 (387)
14 PTZ00298 mevalonate kinase; Pr 100.0 1.6E-30 3.6E-35 248.4 20.0 195 13-316 93-290 (328)
15 TIGR01220 Pmev_kin_Gr_pos phos 100.0 1.7E-29 3.7E-34 244.0 21.0 199 10-317 96-327 (358)
16 COG2605 Predicted kinase relat 100.0 1.5E-28 3.3E-33 224.8 18.2 200 14-317 89-296 (333)
17 PRK13412 fkp bifunctional fuco 100.0 2.1E-28 4.6E-33 257.1 21.4 197 13-317 725-933 (974)
18 PRK03926 mevalonate kinase; Pr 100.0 8.5E-28 1.9E-32 226.7 18.9 192 12-317 73-265 (302)
19 KOG1511 Mevalonate kinase MVK/ 99.9 1.5E-26 3.3E-31 215.9 17.0 196 15-317 132-342 (397)
20 PLN02451 homoserine kinase 99.9 5.4E-21 1.2E-25 185.4 20.4 187 12-317 132-325 (370)
21 COG0083 ThrB Homoserine kinase 99.8 3.7E-19 8.1E-24 166.4 16.1 176 15-312 78-255 (299)
22 TIGR01920 Shik_kin_archae shik 99.8 5.7E-19 1.2E-23 163.8 16.2 99 13-115 63-164 (261)
23 TIGR00191 thrB homoserine kina 99.8 1.9E-18 4.2E-23 163.4 17.2 93 13-115 79-174 (302)
24 PRK00128 ipk 4-diphosphocytidy 99.8 3E-18 6.6E-23 160.6 14.1 173 13-317 83-256 (286)
25 PRK01212 homoserine kinase; Pr 99.8 1.1E-17 2.5E-22 157.7 16.6 175 13-310 80-257 (301)
26 PRK03188 4-diphosphocytidyl-2- 99.8 1.5E-17 3.2E-22 157.2 16.3 179 13-318 82-261 (300)
27 PRK01123 shikimate kinase; Pro 99.7 2E-17 4.4E-22 155.0 14.0 98 13-115 74-174 (282)
28 TIGR01219 Pmev_kin_ERG8 phosph 99.7 3.4E-16 7.3E-21 154.7 20.1 101 12-116 111-281 (454)
29 PTZ00299 homoserine kinase; Pr 99.7 3.9E-16 8.4E-21 149.5 14.9 180 12-311 80-266 (336)
30 PRK02534 4-diphosphocytidyl-2- 99.7 7.2E-16 1.6E-20 146.5 15.3 92 12-115 84-176 (312)
31 TIGR00154 ispE 4-diphosphocyti 99.6 4.8E-15 1E-19 139.8 15.7 92 12-115 84-175 (293)
32 PRK14614 4-diphosphocytidyl-2- 99.6 3.1E-15 6.7E-20 140.2 13.1 91 13-115 84-174 (280)
33 PRK14611 4-diphosphocytidyl-2- 99.6 2.1E-14 4.6E-19 134.2 15.5 91 13-115 79-169 (275)
34 PRK14616 4-diphosphocytidyl-2- 99.6 2E-14 4.4E-19 135.0 14.7 92 12-115 81-173 (287)
35 PF00288 GHMP_kinases_N: GHMP 99.6 1.6E-15 3.6E-20 112.0 5.5 67 16-83 1-67 (67)
36 PRK14609 4-diphosphocytidyl-2- 99.6 6.3E-14 1.4E-18 130.7 15.1 91 13-115 81-172 (269)
37 PRK14608 4-diphosphocytidyl-2- 99.6 4.4E-14 9.4E-19 133.1 13.4 92 12-115 88-179 (290)
38 TIGR00144 beta_RFAP_syn beta-R 99.5 1.2E-12 2.6E-17 125.1 20.3 93 13-115 81-191 (324)
39 PRK14615 4-diphosphocytidyl-2- 99.5 3.2E-13 7E-18 127.5 14.8 91 13-115 87-178 (296)
40 PRK14612 4-diphosphocytidyl-2- 99.5 5.8E-13 1.3E-17 124.5 11.9 87 13-115 82-168 (276)
41 PRK14613 4-diphosphocytidyl-2- 99.4 1.3E-12 2.7E-17 123.6 14.1 88 13-115 92-180 (297)
42 TIGR01240 mevDPdecarb diphosph 99.2 1.3E-09 2.7E-14 103.5 19.2 52 13-64 84-135 (305)
43 PRK00343 ipk 4-diphosphocytidy 99.2 8.5E-10 1.8E-14 103.1 15.7 90 13-115 86-175 (271)
44 PRK14610 4-diphosphocytidyl-2- 99.1 2E-09 4.3E-14 101.2 13.2 89 13-115 83-173 (283)
45 PF08544 GHMP_kinases_C: GHMP 99.0 2.1E-10 4.5E-15 87.7 4.0 62 243-316 1-63 (85)
46 COG1685 Archaeal shikimate kin 99.0 1.2E-08 2.5E-13 93.6 15.0 99 13-115 69-170 (278)
47 KOG4644 L-fucose kinase [Carbo 98.9 6.6E-08 1.4E-12 95.2 18.7 197 12-316 689-903 (948)
48 COG4542 PduX Protein involved 98.8 5.8E-08 1.3E-12 88.3 13.2 90 13-115 82-172 (293)
49 COG1907 Predicted archaeal sug 98.8 7E-07 1.5E-11 82.9 19.1 94 13-116 70-173 (312)
50 PRK00650 4-diphosphocytidyl-2- 98.8 3.6E-08 7.8E-13 92.7 10.6 91 13-115 79-169 (288)
51 PRK05905 hypothetical protein; 98.8 6.8E-08 1.5E-12 89.6 12.1 90 13-115 85-174 (258)
52 COG1947 IspE 4-diphosphocytidy 98.7 9.2E-08 2E-12 89.6 11.9 92 12-115 83-174 (289)
53 PRK04181 4-diphosphocytidyl-2- 98.7 1.3E-07 2.8E-12 87.8 11.5 91 13-115 85-175 (257)
54 PLN02407 diphosphomevalonate d 98.7 7E-07 1.5E-11 85.5 15.8 60 15-83 104-166 (343)
55 KOG1537 Homoserine kinase [Ami 98.3 1.9E-06 4.2E-11 78.9 7.0 52 14-65 94-145 (355)
56 KOG2833 Mevalonate pyrophospha 98.1 5.9E-05 1.3E-09 70.9 14.0 49 15-63 106-154 (395)
57 COG1829 Predicted archaeal kin 98.1 7.4E-05 1.6E-09 69.1 13.6 102 14-122 74-178 (283)
58 COG3407 MVD1 Mevalonate pyroph 98.0 0.00041 8.8E-09 66.3 16.5 50 14-63 90-139 (329)
59 COG3890 ERG8 Phosphomevalonate 98.0 0.00026 5.7E-09 65.6 14.3 85 26-115 107-202 (337)
60 KOG4519 Phosphomevalonate kina 96.8 0.077 1.7E-06 50.7 15.6 59 25-83 151-223 (459)
61 TIGR02957 SigX4 RNA polymerase 44.7 62 0.0014 30.0 6.3 60 189-269 123-194 (281)
62 PRK09635 sigI RNA polymerase s 42.3 67 0.0015 30.2 6.1 58 189-267 133-202 (290)
63 PF03991 Prion_octapep: Copper 41.3 13 0.00028 16.0 0.5 6 307-312 2-7 (8)
64 PRK09636 RNA polymerase sigma 40.6 78 0.0017 29.5 6.3 58 189-267 130-199 (293)
65 PF08429 PLU-1: PLU-1-like pro 31.7 4.5E+02 0.0097 24.8 10.4 95 178-297 3-113 (335)
66 PF01355 HIPIP: High potential 28.4 19 0.00042 26.2 0.0 12 307-318 39-50 (64)
67 PRK12333 nucleoside triphospha 24.4 1.5E+02 0.0031 26.8 4.8 65 231-304 30-98 (204)
68 KOG0051 RNA polymerase I termi 20.4 1.3E+02 0.0028 31.5 4.1 89 180-274 321-423 (607)
No 1
>PLN02521 galactokinase
Probab=100.00 E-value=1.3e-60 Score=475.54 Aligned_cols=298 Identities=66% Similarity=0.940 Sum_probs=271.6
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.||++.|.|+||+|+|||||||++||++.|++.+++.++++++++++|+++|+++|.++|+|||+++++|++|+++++||
T Consensus 148 ~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~ 227 (497)
T PLN02521 148 VGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFTCKCERHIGTQSGGMDQAISIMAQQGVAKLIDF 227 (497)
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCccCCCCChHHHHHHHhcCCCcEEEEec
Confidence 49999999999999999999999999999999999999999999999999999889999999999999999999999999
Q ss_pred CCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcc
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 172 (318)
++++++++++|.++.|||++|+++++|+.+++++||.|+.||+.|+++|+++++++.+....++.+|||+++.+....+.
T Consensus 228 ~~l~~~~v~~p~~~~~vv~~s~v~~~k~~~a~~~Yn~R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 307 (497)
T PLN02521 228 NPVRATDVQLPAGGTFVIANSLAESNKAVTAATNYNNRVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGS 307 (497)
T ss_pred CCCceEEeecCCCcEEEEEECCCcccccccccccccHHHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999887765433222477999997644334456
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021052 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~ 252 (318)
+...++.+.+++.+.+.+|+.++++++++..+++++++.++.+++++.++.|.+|+|++|+++|+.||.+|+++|+++++
T Consensus 308 ~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~ 387 (497)
T PLN02521 308 HGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFKNSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLS 387 (497)
T ss_pred ccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhhccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCc
Confidence 67777889999999999999999999887677788877777888888899999999999999999999999999999876
Q ss_pred chHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 253 EEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 253 ~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
++++++.||+||++||+|||++|+||||+ + |.|+++|++.|++||||||||||||+++
T Consensus 388 ~~~~~~~lg~lm~~sh~slr~~~~vS~~e---l----D~lv~~a~~~Ga~GaRltGaG~GG~~i~ 445 (497)
T PLN02521 388 EEEKLKKLGDLMNESHYSCSVLYECSCPE---L----EELVKVCRDNGALGARLTGAGWGGCAVA 445 (497)
T ss_pred cchHHHHHHHHHHHHHHHHhhccCCCcHH---H----HHHHHHHHhcCCcEEEECCCCCCeEEEE
Confidence 66679999999999999999999999999 9 9999999999999999999999999985
No 2
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.4e-60 Score=448.61 Aligned_cols=244 Identities=30% Similarity=0.396 Sum_probs=219.3
Q ss_pred CCcceeeecc---cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccc
Q 021052 1 MKGETVVIIT---KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQ 76 (318)
Q Consensus 1 ~~~~~~~~~~---~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~ 76 (318)
+||+++.+.. .++|+++.|.|+||.|+|||||||+.||++.++.++++.++++.+++++++++|+ |+|++||+|||
T Consensus 99 vkgvi~~l~~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~fvGvn~G~mDQ 178 (390)
T COG0153 99 VKGVIKALQKRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQFVGVNCGIMDQ 178 (390)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhccCCcCchHHH
Confidence 3677776655 7789999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred eeeeeccCCeEEEEeeCCCeEEEeecCCC-cEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 021052 77 AISIMAKSGFAELIDFNPIRTTDVQLPAG-GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (318)
Q Consensus 77 ~~~~~G~~g~~~~id~~~~~~~~~~~~~~-~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~ 155 (318)
+++.||++++++++||++++++++|+|.+ +.+||+||++ ||.+++++||.|+.||..|++.|++ +
T Consensus 179 ~~s~~G~~~~al~ld~~~l~~~~~~~p~~~~~ivI~ns~v---kr~la~seYn~Rr~ece~A~~~l~~-~---------- 244 (390)
T COG0153 179 LASAFGKKDHALLLDCRTLEYEPVPFPVGGVSIVIVNSNV---KRELADSEYNERRAECEEAAEFLGV-S---------- 244 (390)
T ss_pred HHHHhCCCCcEEEEEcccCceEEeccCccceEEEEecCCC---ccccchhHHHHHHHHHHHHHHHHHH-h----------
Confidence 99999999999999999999999999975 9999999999 8999999999999999999999998 2
Q ss_pred cccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHH
Q 021052 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (318)
Q Consensus 156 ~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~ 235 (318)
.+.|+|++.. ++++... + |+. ...+++|++|+++
T Consensus 245 ~~~L~d~~~~-----------------------------~~~~~~~----~-----------i~~--~~~~~rRa~hvv~ 278 (390)
T COG0153 245 IKSLRDVTDE-----------------------------EFAALQA----E-----------IEV--DPKIARRARHVVT 278 (390)
T ss_pred hhhhhhcCHH-----------------------------HHHhhhh----h-----------ccc--chHHHHHHHHHHh
Confidence 2478888663 2222111 0 000 1157999999999
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHh-CCCCcccccCCCCCce
Q 021052 236 EAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARK-PGHTPPPTTPPPIQSK 314 (318)
Q Consensus 236 E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~-~Ga~GakltGaG~GG~ 314 (318)
|++||.++++||+++| +++||+||++||.|||++|+||||| + |+|+++|+. .|++||||||||||||
T Consensus 279 En~Rvl~a~~Al~~~d-----l~~fG~Lm~~SH~slrddyevt~pE---l----D~lve~a~~~~G~~GaRmTGaGfGGc 346 (390)
T COG0153 279 ENQRVLEAAKALRSGD-----LTEFGELMNESHESLRDDYEVTCPE---L----DTLVEIALAAGGAYGARMTGAGFGGC 346 (390)
T ss_pred HHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHhcccccchh---H----HHHHHHHHHcCCcccceecCCCCCce
Confidence 9999999999999999 9999999999999999999999999 9 999999986 5889999999999999
Q ss_pred ee
Q 021052 315 TK 316 (318)
Q Consensus 315 v~ 316 (318)
+|
T Consensus 347 ~I 348 (390)
T COG0153 347 VI 348 (390)
T ss_pred EE
Confidence 97
No 3
>PLN02865 galactokinase
Probab=100.00 E-value=2.4e-54 Score=422.48 Aligned_cols=247 Identities=26% Similarity=0.258 Sum_probs=213.2
Q ss_pred Ccceeeecc---cC-ccEEEEEEeCC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCccc
Q 021052 2 KGETVVIIT---KF-QLFNHINSLFF-NLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMD 75 (318)
Q Consensus 2 ~~~~~~~~~---~~-~G~~i~i~s~I-P~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D 75 (318)
||++..+.. ++ +||++.|.++| |+++|||||||++||++.|++.+++.++++++++++|+++|+ ++|.|||+||
T Consensus 114 ~gv~~~l~~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a~~~E~~~~G~~~G~mD 193 (423)
T PLN02865 114 RGAVYALQSRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELDRLIENEYLGLRNGILD 193 (423)
T ss_pred HHHHHHHHHcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcccc
Confidence 455555533 34 69999999999 579999999999999999999999999999999999999998 9999999999
Q ss_pred ceeeeeccCCeEEEEeeCCCeEEEeecC-------CCcEEEEEEcCCcccccccc-cccchhHHHHHHHHHHHHHHHhCC
Q 021052 76 QAISIMAKSGFAELIDFNPIRTTDVQLP-------AGGTFVVAHSLAESLKAITA-ASNYNNRVVECRLTAIVLAIKLGM 147 (318)
Q Consensus 76 ~~~~~~G~~g~~~~id~~~~~~~~~~~~-------~~~~~vl~~sg~~~~k~~~~-~~~yn~r~~e~~~aa~~l~~~~~~ 147 (318)
|+++++|+.|+++++||++++++.+++| .++.|++++|++ +|... +++||.|+.||+.|+++|++++++
T Consensus 194 Q~as~~~~~g~~~~iDf~~l~~~~vpl~~~~~~~~~~~~ivv~~s~~---~h~l~~~~~Yn~Rr~Ec~~aa~~l~~~~~~ 270 (423)
T PLN02865 194 QSAILLSRYGCLTFMDCKTLDHKLVSLQFQQPGGEKPFKILLAFSGL---RHALTNKPGYNLRVSECQEAARFLLEASGN 270 (423)
T ss_pred HHHHHhcccCceEEEEccCCCcceeecCcccccCCCCeEEEEEeCCC---chhhcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999887777776 368999999999 57655 789999999999999999987654
Q ss_pred CchhhhhccccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHH
Q 021052 148 KPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLH 227 (318)
Q Consensus 148 ~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (318)
.. ...+|||+.. +++.+... .+++ .++
T Consensus 271 ~~-----~~~~Lr~~~~-----------------------------~~~~~~~~-~l~~------------------~l~ 297 (423)
T PLN02865 271 DE-----LEPLLCNVEP-----------------------------EVYEAHKC-KLEA------------------VLA 297 (423)
T ss_pred cc-----chhhhhcCCH-----------------------------HHHHHHHh-hcCH------------------HHH
Confidence 21 1246777643 12222111 0111 479
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHh-CCCCcccc
Q 021052 228 QRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARK-PGHTPPPT 306 (318)
Q Consensus 228 ~R~~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~-~Ga~Gakl 306 (318)
+|++|+++|+.||.+++++|+++| ++.||+||++||.|||++|+||||| + |.|++++++ .|++|+||
T Consensus 298 ~Ra~Hv~~E~~Rv~~~~~al~~~d-----~~~~g~lm~~sh~Slrd~yevS~~e---l----d~lv~~a~~~~Ga~GaR~ 365 (423)
T PLN02865 298 RRAEHYFSENMRVIKGVEAWASGN-----LEEFGKLISASGLSSIENYECGCEP---L----IQLYEILLKAPGVYGARF 365 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHhhhhHHhhccCCcHH---H----HHHHHHHHhcCCCeEEEE
Confidence 999999999999999999999999 9999999999999999999999999 9 999999998 59999999
Q ss_pred cCCCCCceee
Q 021052 307 TPPPIQSKTK 316 (318)
Q Consensus 307 tGaG~GG~v~ 316 (318)
||||||||++
T Consensus 366 tGgGfGGc~v 375 (423)
T PLN02865 366 SGAGFRGCCV 375 (423)
T ss_pred eccCCccEEE
Confidence 9999999997
No 4
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=9.1e-54 Score=422.41 Aligned_cols=257 Identities=17% Similarity=0.166 Sum_probs=201.1
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----------------CC---CHHHHHHHHHHHHH-HhCC
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----------------EV---PKKEIAQLTCECEQ-FIGT 69 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~-----------------~l---s~~ela~la~~~E~-~~G~ 69 (318)
+++||++.|.|+||+|+|||||||++||++.|++++++. .+ +..+++.+|+++|| ++|.
T Consensus 131 ~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~aqraEn~~vGv 210 (468)
T PTZ00290 131 SLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRRYSILPPMSKEELIELAKQARRIETEFCGV 210 (468)
T ss_pred CCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccccccccccCcccHHHHHHHHHHHHHhhcCC
Confidence 347999999999999999999999999999999998732 12 34888999999999 9999
Q ss_pred CCCcccceeeeeccCCeEEEEeeCCCeEEEeecC----CCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHh
Q 021052 70 QSGGMDQAISIMAKSGFAELIDFNPIRTTDVQLP----AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKL 145 (318)
Q Consensus 70 ~~G~~D~~~~~~G~~g~~~~id~~~~~~~~~~~~----~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~ 145 (318)
|||+|||+++++|+.|+++++||+++++++++++ .++.|+|+||++++++..+++.+||.|+.||+.|++.|+++.
T Consensus 211 ~cGiMDQ~asa~g~~~~al~iD~~~l~~~~v~l~~~~~~~~~~vV~nS~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~ 290 (468)
T PTZ00290 211 NVGIMDQFISAFAEEDKFMFLDCKSLTFESHDMTPLLGDGACFLLIDSMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHR 290 (468)
T ss_pred CcchhhHHHHHhCCCCcEEEEecCCCeEEEeccCCCCCCCcEEEEEeCCCcchhccccchhhHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999875 479999999999533333334599999999999999997641
Q ss_pred CCCchhhhhccc-cchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHH
Q 021052 146 GMKPQEAISKVK-TLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (318)
Q Consensus 146 ~~~~~~~~~~~~-~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
+ +.+. +|||+.. ..++||.++.. .++.+.+.+.++ .
T Consensus 291 -l------~~~~~~Lrd~~~----------------------~~~~~~~~~~~-------~~~~~~~~~~l~-------~ 327 (468)
T PTZ00290 291 -Y------RGKPFTFSDLVR----------------------NPKKYTFDGDV-------VAFMESCKPLMT-------P 327 (468)
T ss_pred -c------cchhhhHHHhhh----------------------ccccccccccH-------HHHHHHhhhcCC-------H
Confidence 0 0111 4444411 12344443210 011111111111 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHH-hCCC
Q 021052 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLS--EEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIAR-KPGH 301 (318)
Q Consensus 225 ~~~~R~~hvi~E~~Rv~~~~~al~~~d~--~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~-~~Ga 301 (318)
.+++|++||++|+.||.+|+++|+..+. ...+++.||+||++||.|||++|+||||| | |.|++++. ..|+
T Consensus 328 ~~~~Ra~HVitEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~~vS~~e---l----D~lv~~~~~~~G~ 400 (468)
T PTZ00290 328 GEFERGTYNIMEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLMKITTPE---L----DFIHELINEEKGV 400 (468)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhcCCCcHH---H----HHHHHHHHHhCCC
Confidence 6799999999999999999999962110 11239999999999999999999999999 9 99999875 5799
Q ss_pred CcccccCCCCCceeec
Q 021052 302 TPPPTTPPPIQSKTKF 317 (318)
Q Consensus 302 ~GakltGaG~GG~v~~ 317 (318)
+||||||||||||+|.
T Consensus 401 ~GaRlTGaG~GGc~i~ 416 (468)
T PTZ00290 401 AGGRMMGGGFGGCIIL 416 (468)
T ss_pred cEEEEecCCCceEEEE
Confidence 9999999999999973
No 5
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=2.3e-50 Score=392.79 Aligned_cols=233 Identities=27% Similarity=0.301 Sum_probs=208.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.||++.|.|+||+|+|||||||++||++.|++++++.++++++++++|+.+|+ ++|.|||+|||+++++|+.++++++|
T Consensus 111 ~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~sG~mDq~as~~G~~~~~~~~d 190 (387)
T PRK05322 111 HGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEFIGVNSGIMDQFAIGMGKKDHAILLD 190 (387)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhccCCCCcchHHHHHHHhccCCeEEEEe
Confidence 79999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eCCCeEEEeecCC-CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
|++++...+++|. ++.|+++||++ ||.++++.||.|+.||+.|++.|++++++ .+||++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~lvv~dsg~---~~~~~~~~yn~r~~e~~~a~~~l~~~~~~---------~~l~~~~~~----- 253 (387)
T PRK05322 191 CNTLEYEYVPLDLGDYVIVIMNTNK---RRELADSKYNERRAECEKALEELQKKLDI---------KSLGELTEE----- 253 (387)
T ss_pred cCCCceEEeccCCCCeEEEEEECCC---ccccCcchhhHHHHHHHHHHHHHhhhcCc---------cchhcCCHH-----
Confidence 9998888888864 67899999999 79999999999999999999999987543 467766432
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
+++.+.. .++ ...+++|++|+++|+.|+.+++++|+++
T Consensus 254 ------------------------~~~~~~~-~~~-----------------~~~~~~r~~h~v~e~~r~~~~~~al~~~ 291 (387)
T PRK05322 254 ------------------------EFDEYSY-LIK-----------------DETLLKRARHAVTENQRTLKAVKALKAG 291 (387)
T ss_pred ------------------------HHHHHHh-hcC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1211110 000 0267999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHH-hCCCCcccccCCCCCceee
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIAR-KPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~-~~Ga~GakltGaG~GG~v~ 316 (318)
| ++.||+||++||.+|++.|++|+|+ + |.|+++|+ ..|++|+||||||||||++
T Consensus 292 d-----~~~lg~lm~~sh~~L~~~y~~s~~e---l----d~lv~~a~~~~Ga~garlsGaG~GG~vi 346 (387)
T PRK05322 292 D-----LEKFGRLMNASHVSLRDDYEVTGLE---L----DTLVEAAWKQEGVLGARMTGAGFGGCAI 346 (387)
T ss_pred C-----HHHHHHHHHHhhHHHHhhhcCCCHh---H----HHHHHHHHhcCCccEEEEecCCCceEEE
Confidence 9 9999999999999999999999999 9 99999997 5799999999999999987
No 6
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=2.5e-49 Score=385.02 Aligned_cols=230 Identities=27% Similarity=0.348 Sum_probs=204.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i 90 (318)
..|+++.+.|+||+++|||||||++||++.|++++++.++++++++++|+++|+ ++|.|||+|||+++++|+.|+++++
T Consensus 110 ~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G~~~G~~Dq~~s~~G~~~~~~~~ 189 (382)
T PRK05101 110 FGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVGCNCGIMDQLISALGKKDHALLI 189 (382)
T ss_pred CCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHcCCCCeEEEE
Confidence 469999999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
|+++.+..++++|.++.|+|+||++ ++.+..+.||.|+.||+.|+++++.+ .|+++..+
T Consensus 190 d~~~~~~~~~~~~~~~~~vv~~sg~---~~~l~~~~y~~r~~e~~~A~~~l~~~-------------~l~~~~~~----- 248 (382)
T PRK05101 190 DCRSLETKAVPMPEGVAVVIINSNV---KRGLVDSEYNTRRQQCETAARFFGVK-------------ALRDVTLE----- 248 (382)
T ss_pred EcCCCceEEeeCCCCcEEEEEeCCC---CccccccchhHHHHHHHHHHHHhChH-------------hhhcCCHH-----
Confidence 9999999999999999999999999 57777789999999999999988653 45554321
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
++.+... .+++ .+++|+.|+++|+.||.+++++|+++
T Consensus 249 ------------------------~~~~~~~-~l~~------------------~~~~r~~h~i~E~~rv~~a~~al~~~ 285 (382)
T PRK05101 249 ------------------------QFNAVAA-ELDP------------------VVAKRARHVITENARTLEAASALAAG 285 (382)
T ss_pred ------------------------HHHHHHh-hCCH------------------HHHHHHHHHhHHHHHHHHHHHHHHcC
Confidence 1111110 0111 56899999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhC-CC-CcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKP-GH-TPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~-Ga-~GakltGaG~GG~v~~ 317 (318)
| ++.||+|||+||.+||++|+||||| + |.|+++|++. |+ +||||||||||||++.
T Consensus 286 d-----~~~lG~Lm~~sh~~lr~~~~vS~~e---l----d~lv~~a~~~~Ga~gGakltGaG~GG~~ia 342 (382)
T PRK05101 286 D-----LKRMGELMAESHASMRDDFEITVPQ---I----DTLVEIVKAVIGDQGGVRMTGGGFGGCIVA 342 (382)
T ss_pred C-----HHHHHHHHHHHhHHHHhhcCCCCHh---H----HHHHHHHHhccCCcceEEeccCCCccEEEE
Confidence 9 9999999999999999999999999 9 9999999996 97 4789999999999974
No 7
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=2e-48 Score=379.28 Aligned_cols=235 Identities=31% Similarity=0.359 Sum_probs=205.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.||++.|.|+||+++|||||||++||++.|++.+++.++++++++++++.+|+ ++|.|+|+|||+++++|+.|+++++|
T Consensus 109 ~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~~g~~Dq~~s~~G~~~~~l~~~ 188 (386)
T TIGR00131 109 LGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFVGVNCGIMDQAASVLGKEDHALLVE 188 (386)
T ss_pred CceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCccCCCcchHHHHHHHhccCCcEEEEE
Confidence 59999999999999999999999999999999999999999999999999998 99999999999999999999999999
Q ss_pred eCCCeEEEeecCC-CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 92 FNPIRTTDVQLPA-GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 92 ~~~~~~~~~~~~~-~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
|++++..++++|+ ++.|+|++|++ ++.|.+..||.|+.||+.|+++++.+. ...+|++.+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~lvv~~s~~---~~~t~~~~y~~r~~e~~~a~~~l~~~~----------~~~lr~~~~~~~--- 252 (386)
T TIGR00131 189 CRSLKATPFKFPQLGIAFVIANTNV---KRTLAPSNYNTRRQECTTAANFLAATD----------KGALRDFMNEYF--- 252 (386)
T ss_pred cCCCceeeecCCCCCeEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhcccc----------ccchhhCCHHHH---
Confidence 9998889999997 89999999999 688988999999999999999998641 125666544210
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
..+.+.++. +.+ ..++|++|+++|+.||.+++++|+++
T Consensus 253 -----------------------~~~~~~~~~-~~~------------------~~~~r~~h~v~e~~rv~~~~~al~~~ 290 (386)
T TIGR00131 253 -----------------------ARYIARLTK-MLP------------------LVEERAKHVVSENLRVLKAVKAMKDN 290 (386)
T ss_pred -----------------------hhhHhhHhh-cCH------------------HHHhhHheeehHHHHHHHHHHHHHhC
Confidence 000011110 111 35789999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHH-HhCCCCcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIA-RKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a-~~~Ga~GakltGaG~GG~v~~ 317 (318)
| ++.||+|||++|.+|+++|+||||+ + |.+++.+ +..||+|||||||||||||+.
T Consensus 291 d-----~~~lG~lm~~sh~~l~~~~~vs~pe---l----d~lv~~a~~~~GAlGakltGaG~GG~via 346 (386)
T TIGR00131 291 D-----FKQFGALMNESHASCDDDYECTCPE---I----DELVCSAALVNGSGGSRMTGAGFGGCTVH 346 (386)
T ss_pred c-----HHHHHHHHHHhhHHHHHhcCCCCHH---H----HHHHHHHHhcCCCcEEEEecCCCceEEEE
Confidence 9 9999999999999999999999999 9 9999886 568999999999999999973
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=2.1e-48 Score=376.19 Aligned_cols=231 Identities=24% Similarity=0.290 Sum_probs=203.6
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
++.|+++.|.|+||+++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.|||+|||+++++|+.|++++
T Consensus 88 ~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~~~G~~Dq~as~~G~~~~~~~ 167 (363)
T PRK00555 88 PVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGAPTGLLDQLAALFGAPKTALL 167 (363)
T ss_pred CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCChhHHHHHHhCCCCeEEE
Confidence 4579999999999999999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred EeeCCCeEEEeecCC---CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhh
Q 021052 90 IDFNPIRTTDVQLPA---GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166 (318)
Q Consensus 90 id~~~~~~~~~~~~~---~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~ 166 (318)
+||++.++.++++|+ ++.|+++||++ ++.+++..||.|+.||+.+++.++. .++|++.+.
T Consensus 168 ~d~~~~~~~~v~~~~~~~~~~lvv~~s~~---~~~~~~~~y~~rr~~~~~~~~~~~~-------------~~lr~~~~~- 230 (363)
T PRK00555 168 IDFRDLTVRPVAFDPDAAGVVLLLMDSRA---RHRHAGGEYAARRASCERAAADLGV-------------SSLRAVQDR- 230 (363)
T ss_pred EEcCCCcEEEeccCCCcCceEEEEEcCCC---cccccchhhHHHHHHHHHHHHHhCc-------------cchhcCCHH-
Confidence 999988888898875 36799999999 6888889999999999988776643 256655331
Q ss_pred hhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021052 167 VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 246 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~a 246 (318)
+++.+ . . ......++|++|+++|+.|+.+++++
T Consensus 231 ----------------------------~~~~~-~----~--------------~~~~~~~~r~~h~~~e~~~v~~~~~a 263 (363)
T PRK00555 231 ----------------------------GLAAL-G----A--------------IADPIDARRARHVLTENQRVLDFAAA 263 (363)
T ss_pred ----------------------------HHHHH-H----h--------------cCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 0 0 00115689999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 247 VSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 247 l~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
|+++| ++.||++|+++|++||+.|+||+|+ + |.|++++++.|++|+||||||||||++.
T Consensus 264 l~~gd-----~~~lg~lm~~~h~~lr~~~~vS~~~---l----d~l~~~a~~~Ga~GaklsGaG~Gg~via 322 (363)
T PRK00555 264 LADSD-----FTAAGQLLTASHASMRDDFEITTER---I----DLIADSAVRAGALGARMTGGGFGGCVIA 322 (363)
T ss_pred HHcCC-----HHHHHHHHHHhhHHHHhhcCCCChh---H----HHHHHHHHhcCCeEEEECCCCccCeEEE
Confidence 99999 9999999999999999999999999 9 9999999999999999999999999973
No 9
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-46 Score=363.33 Aligned_cols=288 Identities=35% Similarity=0.456 Sum_probs=253.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEE
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF-GVE--VPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~-g~~--ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
-|+.+...+++|.|+||+||||+.++.+.|..++. |.+ .+++++..+...+|++.|.++|+|||.++++|..+++++
T Consensus 141 vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~ 220 (489)
T KOG0631|consen 141 VGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLATITVVAESYIGLNSGGMDQAASVLAEKGHALL 220 (489)
T ss_pred cceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhhcceEEeecccCcCCCcHHHHHHHHHhcCceEE
Confidence 49999999999999999999999999999999998 887 889999999999999999999999999999999999999
Q ss_pred Ee--eCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 021052 90 ID--FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (318)
Q Consensus 90 id--~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~ 167 (318)
++ +.|++...+++|..-.|||.++.+.++|..++.++||.|+.||+.++..+++++++.+..........+.
T Consensus 221 v~~~~~Pf~~~~lk~~~~~vfvI~~~L~~~nk~~~a~tnynlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~------ 294 (489)
T KOG0631|consen 221 VDPYFTPFRRSMLKLPDGGVFVIANSLVESNKAETAETNYNLRVVEGTIAAGELAAKILVELPAYILRYQLQRA------ 294 (489)
T ss_pred ecccCCccccccccCCCCceEEEechhhhhcchhhhhhhhhceeEeeehhhHHHHHHhhcccHHHHHhhhhhhc------
Confidence 99 5588888888887779999999999999999999999999999999999999987754311111111111
Q ss_pred hhhc-----cCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 021052 168 AFAC-----KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHA 242 (318)
Q Consensus 168 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~ 242 (318)
|.+ -.+.++|+..+++.+.+++|+.+++...++.+.++|.+.+++..++ ....+++++|++|+++|+.|+.+
T Consensus 295 -~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~~~~T~~~v--~~~~~k~~~rakHv~sea~rv~q 371 (489)
T KOG0631|consen 295 -WRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQSLLTLAAV--DLQVKKLYQRAKHVYSEALRVLQ 371 (489)
T ss_pred -cccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHHHhccccch--hhHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1246678889999998889999999999999999999999999987 55667899999999999999999
Q ss_pred HHHHHhcCCCc-hHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 243 FKDTVSSNLSE-EDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 243 ~~~al~~~d~~-~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
+..++.+.+.. +..++.||+|||+||+||+++|+||||| + |+|+++|+++|.+|+|+||||||||.+
T Consensus 372 ~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yEcscpe---l----~qL~kiala~g~~gaRlTGaGwGGc~v 439 (489)
T KOG0631|consen 372 EEKLCARAPGRADGFLADFGRLMNESHRSCDVLYECSCPE---L----DQLCKIALANGGVGARLTGAGWGGCTV 439 (489)
T ss_pred HHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHhcCCHh---H----HHHHHHHHhcCCccceeecccccccee
Confidence 99999986532 2468999999999999999999999999 9 999999999999999999999999987
No 10
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=4.6e-42 Score=330.61 Aligned_cols=227 Identities=27% Similarity=0.327 Sum_probs=201.9
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
+.+|+++.+.|+||+++|||||||++||++.|++++++.++++++++++|..+|+ ++|.|+|+|||+++++|+.+++++
T Consensus 83 ~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~~g~~D~~~~~~g~~~~~~~ 162 (351)
T PRK03817 83 EVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVPCGIMDQFAVAFGKKDHAIF 162 (351)
T ss_pred CCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCCCcCchhhheeeccCCEEEE
Confidence 3479999999999999999999999999999999999999999999999999998 999999999999999998888999
Q ss_pred EeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
+|+++....++++|.++.|++++|+. ++.+.+..||.|+.+|+.+.+.++.. +++++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~vv~~sg~---~~~~~~~~~~~~~~~~~~~~~~l~~~-------------~~~~~~~----- 221 (351)
T PRK03817 163 LDTMTLEYEYVPFPEDYEILVFDTGV---KRELASSEYNERRQECEEALKILGKK-------------SSKEVTE----- 221 (351)
T ss_pred EecCCCceEEEecCCCcEEEEEeCCC---ccccccchhHHHHHHHHHHHHHhCcc-------------chhcCCH-----
Confidence 99988888889999999999999998 56666679999999999988887642 3333221
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
+++.. +++ .+++|+.|+++|+.|+.+++.+|++
T Consensus 222 ------------------------~~~~~-----l~~------------------~~~~~~~~~v~e~~r~~~~~~al~~ 254 (351)
T PRK03817 222 ------------------------EDLSK-----LPP------------------LLRKRAGYVLRENERVLKVRDALKE 254 (351)
T ss_pred ------------------------HHHHh-----CCH------------------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11110 111 4688999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+| ++.||++|++||.++++.|++|+|+ + |.|++++++.|++|+|||||||||||+.
T Consensus 255 ~d-----~~~lg~l~~~s~~~l~~~~~~s~p~---l----d~l~~~a~~~GalGaklsGaG~Gg~vla 310 (351)
T PRK03817 255 GD-----IETLGELLTESHWDLADNYEVSCEE---L----DFFVEFALELGAYGARLTGAGFGGSAIA 310 (351)
T ss_pred CC-----HHHHHHHHHHHHHHHHhhcCCCcHH---H----HHHHHHHHHcCCCEEEEecCCCCeEEEE
Confidence 99 9999999999999999999999999 9 9999999999999999999999999973
No 11
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=7e-33 Score=260.42 Aligned_cols=197 Identities=21% Similarity=0.188 Sum_probs=155.2
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
+.+||++.|.|+||+++|||||||+.||++.|++.++|.+++++++++++.++|. ++|.||| +|.+++++|+ +++
T Consensus 80 ~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~Sg-~D~a~~~~gg---~v~ 155 (307)
T COG1577 80 SLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKASG-IDIATITYGG---LVA 155 (307)
T ss_pred CCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCCc-ccceEEEeCC---EEE
Confidence 5679999999999999999999999999999999999999999999999999998 9999999 7999999974 666
Q ss_pred EeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
+... ..++++.++..-.|++.|+|++ .+|. ++++.+++. ++
T Consensus 156 ~~~~-~~~~~l~~~~~~~~~I~~tg~~---~sT~------------e~V~~V~~l---------------~~-------- 196 (307)
T COG1577 156 FKKG-FDFEKLEIELLGTLVIGDTGVP---GSTK------------ELVAGVAKL---------------LE-------- 196 (307)
T ss_pred EecC-CCccccccccCCeEEEEEcCCc---CcHH------------HHHHHHHHH---------------HH--------
Confidence 6531 3455666654338999999984 4442 222222221 10
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
+. + ..+....+.+.+ -+.++..++++
T Consensus 197 -------------------------~~--------~-------------------~~~~~~~~~ig~--~~~~a~~al~~ 222 (307)
T COG1577 197 -------------------------EE--------P-------------------EVIDPILDAIGE--LVQEAEAALQT 222 (307)
T ss_pred -------------------------hh--------h-------------------HHHHHHHHHHHH--HHHHHHHHHhc
Confidence 00 0 112222233332 26788999999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+| .+.||++||.+|.-|. .++||+|+ + |+|++++++.|++|||+||||+|||+|.
T Consensus 223 ~d-----~e~lgelm~~nq~LL~-~LgVs~~~---L----~~lv~~a~~~Ga~gaKlTGAGgGGc~Ia 277 (307)
T COG1577 223 GD-----FEELGELMNINQGLLK-ALGVSTPE---L----DELVEAARSLGALGAKLTGAGGGGCIIA 277 (307)
T ss_pred cc-----HHHHHHHHHHHHHHHH-hcCcCcHH---H----HHHHHHHHhcCccccccccCCCCceEEE
Confidence 99 9999999999997554 57999999 9 9999999999999999999999999984
No 12
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=8.1e-33 Score=256.93 Aligned_cols=194 Identities=22% Similarity=0.166 Sum_probs=152.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.++++.+.|+||+++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.||| +||+++++|+ +++++
T Consensus 77 ~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG-~D~~~~~~Gg---~~~~~ 152 (273)
T TIGR00549 77 PPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSG-IDTATSTYGG---PVYFE 152 (273)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCch-HhHHHHhcCC---eEEEE
Confidence 35999999999999999999999999999999999999999999999999998 9999999 6999999974 56776
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~ 171 (318)
.... ...+..+.++.+++++|+. +++|. .+.+.+.+. ++..+
T Consensus 153 ~~~~-~~~~~~~~~~~lvl~~tg~---~~~T~------------~~~~~v~~~---------------~~~~~------- 194 (273)
T TIGR00549 153 KGEG-EFTKLISLDGYFVIADTGV---SGSTK------------EAVARVRQL---------------LERFP------- 194 (273)
T ss_pred cCCC-ceeeccCCCeEEEEEECCC---CCcHH------------HHHHHHHHH---------------HHhCH-------
Confidence 5533 2344445568999999998 45553 111111110 00000
Q ss_pred cCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 021052 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNL 251 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d 251 (318)
+.+. ..++++ ..++.++.++|+++|
T Consensus 195 ----------------------~~~~---------------------------~~~~~~------~~~~~~~~~al~~~d 219 (273)
T TIGR00549 195 ----------------------ELID---------------------------SIMDAI------GELTLEAKAALQDGD 219 (273)
T ss_pred ----------------------HHHH---------------------------HHHHHH------HHHHHHHHHHHHhCC
Confidence 0000 112222 136788999999999
Q ss_pred CchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 252 SEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 252 ~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
++.||++|+++|..+++ +++|+|+ + |+|++.+++.|++|+||||||+|||++
T Consensus 220 -----~~~lg~l~~~~~~~l~~-~~vs~p~---l----~~l~~~~~~~Ga~gaklsGaG~GG~~i 271 (273)
T TIGR00549 220 -----VESLGELMNINQGLLKA-LGVSHPK---L----DQLVETARKAGALGAKLTGAGGGGCMI 271 (273)
T ss_pred -----HHHHHHHHHHHHHHHHH-cCCCcHH---H----HHHHHHHHHCCCceeeeccCCCCceEE
Confidence 99999999999987765 7999999 9 999999999999999999999999997
No 13
>PLN02677 mevalonate kinase
Probab=99.98 E-value=1.4e-31 Score=259.86 Aligned_cols=200 Identities=19% Similarity=0.147 Sum_probs=148.5
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHH-HhCCCCCccc
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-EV-------------PKKEIAQLTCECEQ-FIGTQSGGMD 75 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~-~l-------------s~~ela~la~~~E~-~~G~~~G~~D 75 (318)
+..++++.|.|+||+|+|||||||++||++.|+..+++. ++ +.+++.++|+.+|+ +||.|||+ |
T Consensus 126 ~~~~~~i~I~S~lP~GaGLGSSAAv~Va~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D 204 (387)
T PLN02677 126 GFNPATVVVTSELPLGSGLGSSAAFCVALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-D 204 (387)
T ss_pred cCCCeEEEEEccCCCCCCccHHHHHHHHHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-h
Confidence 356899999999999999999999999999999999983 22 23578899999998 99999995 9
Q ss_pred ceeeeeccCCeEEEEeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 021052 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (318)
Q Consensus 76 ~~~~~~G~~g~~~~id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~ 155 (318)
+++++||+ + +.|+....++++.+.+++|+++||++ +++|+ ..++.+++.
T Consensus 205 ~a~s~~Gg---~--I~f~~~~~~~l~~~~~l~llv~dTgv---~~sT~------------~lV~~V~~~----------- 253 (387)
T PLN02677 205 NTVSTYGN---M--IKFKSGELTRLQSNMPLKMLITNTRV---GRNTK------------ALVAGVSER----------- 253 (387)
T ss_pred HHHHhcCC---e--EEEcCCCceecCCCCCceEEEEECCC---CCcHH------------HHHHHHHHH-----------
Confidence 99999985 3 44555566777777789999999999 46663 111222221
Q ss_pred cccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHH
Q 021052 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (318)
Q Consensus 156 ~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~ 235 (318)
++.. +++++ .+++++.++
T Consensus 254 ----~~~~-----------------------------------------p~~~~---------------~il~~~~~i-- 271 (387)
T PLN02677 254 ----ALRH-----------------------------------------PDAMK---------------SVFNAVDSI-- 271 (387)
T ss_pred ----HHhC-----------------------------------------HHHHH---------------HHHHHHHHH--
Confidence 1000 00000 112222222
Q ss_pred HHHHHHHHHHHHhcC--CC--chHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCC
Q 021052 236 EAKRVHAFKDTVSSN--LS--EEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPI 311 (318)
Q Consensus 236 E~~Rv~~~~~al~~~--d~--~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~ 311 (318)
+.++.++|+++ |. .+.+++.||++|+.+|.-|+. ++||+|+ | |.+++++++.| +|||+||||+
T Consensus 272 ----~~~a~~al~~~~~~~~~~~~~~~~Lg~lm~~N~~LL~~-LGVS~~~---l----e~iv~~a~~~~-~~AKlTGAGg 338 (387)
T PLN02677 272 ----SEELATIIQSPAEDELSITEKEEKLKELMEMNQGLLQC-MGVSHSS---I----ETVLRTTLKYK-LVSKLTGAGG 338 (387)
T ss_pred ----HHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHH-cCCCcHH---H----HHHHHHHHHcC-CccccccCCC
Confidence 45677788872 20 113489999999999987765 7999999 9 99999999985 7999999999
Q ss_pred Cceeec
Q 021052 312 QSKTKF 317 (318)
Q Consensus 312 GG~v~~ 317 (318)
|||++.
T Consensus 339 GGC~Ia 344 (387)
T PLN02677 339 GGCVLT 344 (387)
T ss_pred CCEEEE
Confidence 999973
No 14
>PTZ00298 mevalonate kinase; Provisional
Probab=99.97 E-value=1.6e-30 Score=248.36 Aligned_cols=195 Identities=18% Similarity=0.136 Sum_probs=154.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
+|++|.|.++||+++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.|+| +|+.++++|+ ++++.
T Consensus 93 ~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~~g~~sG-~D~~~~~~Gg---~~~~~ 168 (328)
T PTZ00298 93 DGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGYHGTPSG-ADNTAATYGG---LISYR 168 (328)
T ss_pred CCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCh-HHHHHHHcCC---eEEEe
Confidence 59999999999999999999999999999999999999999999999999998 9999999 5999999874 55554
Q ss_pred eCC--CeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 92 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 92 ~~~--~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
... ..+.++++|.++.+++++|++ +++|. +++... +.+++..+
T Consensus 169 ~~~g~~~~~~l~~~~~~~lvv~~~~~---~~sT~---------------~~~~~v------------~~~~~~~p----- 213 (328)
T PTZ00298 169 RVNGKSVFKRIAFQQPLYLVVCSTGI---TASTT---------------KVVGDV------------RKLKENQP----- 213 (328)
T ss_pred cCCCccceeEecCCCCCeEEEEECCC---chhHH---------------HHHHHH------------HHHHhcCH-----
Confidence 322 245677777788999999998 35542 111110 00111000
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
+.++ .+++|..| ++.++..+|++
T Consensus 214 ------------------------~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 236 (328)
T PTZ00298 214 ------------------------TWFN---------------------------RLLENYNA------CVSEAKEALQK 236 (328)
T ss_pred ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 0000 22344444 35678889999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
+| ++.||++|+++|+.+++ +++++|+ + |.+++.+++.|++|+||||+|+|||++
T Consensus 237 ~d-----~~~lg~~m~~~~~~l~~-~~v~~p~---l----~~l~~~~~~~Ga~gaklSGsG~GG~v~ 290 (328)
T PTZ00298 237 GN-----LFRVGELMNANHDLCQK-LTVSCRE---L----DSIVQTCRTYGALGAKMSGTGRGGLVV 290 (328)
T ss_pred CC-----HHHHHHHHHHHHHHHHH-hCCCcHH---H----HHHHHHHHhCCCceeEeccCCCCeEEE
Confidence 99 99999999999998885 6899999 9 999999999999999999999999997
No 15
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.97 E-value=1.7e-29 Score=244.05 Aligned_cols=199 Identities=15% Similarity=0.089 Sum_probs=153.2
Q ss_pred ccCccEEEEEEeCCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccC
Q 021052 10 TKFQLFNHINSLFFNLG----SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKS 84 (318)
Q Consensus 10 ~~~~G~~i~i~s~IP~g----~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~ 84 (318)
.+++|+++.|.|+||++ +|||||||++||++.|++.+++.++++++++++|+.+|+ ++|.++| .|+++++||+
T Consensus 96 ~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~~E~~~~g~~sg-~D~~a~~~GG- 173 (358)
T TIGR01220 96 QKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAMLATAELQPKGSC-GDIAASTYGG- 173 (358)
T ss_pred CCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhhCCCCCc-chhhhhhhCC-
Confidence 34679999999999994 699999999999999999999999999999999999998 8899888 5999999984
Q ss_pred CeEEEE-eeC----------------------CCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHH
Q 021052 85 GFAELI-DFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 141 (318)
Q Consensus 85 g~~~~i-d~~----------------------~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l 141 (318)
++++ ++. +..++++++|++++|++++||++ ++|. ...+.+
T Consensus 174 --~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~l~v~~tg~~---~~T~------------~~v~~V 236 (358)
T TIGR01220 174 --WIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPKGLTLLIGWTGSP---ASTA------------SLVSDV 236 (358)
T ss_pred --EEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCCCCEEEEEeCCCC---cCcH------------HHHHHH
Confidence 3333 221 23467788888899999999984 5552 111111
Q ss_pred HHHhCCCchhhhhccccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHH
Q 021052 142 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 221 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 221 (318)
.+.+ .-.+ +.++
T Consensus 237 ~~~~---------------~~~~-----------------------------~~~~------------------------ 248 (358)
T TIGR01220 237 HRRK---------------WRGS-----------------------------ASYQ------------------------ 248 (358)
T ss_pred HHHh---------------hcCh-----------------------------HHHH------------------------
Confidence 1110 0000 0000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhh-----ccCCCccchhhhccHHHHHHHH
Q 021052 222 KQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-----YECSITSSARVHEILISMVTIA 296 (318)
Q Consensus 222 ~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~-----~~vS~pe~~~l~~~~d~lv~~a 296 (318)
.+.+++.. .+.++.++|+++| ++.||++|+++|..|+.+ +++|+|+ + |.|++.+
T Consensus 249 ---~~l~~~~~------i~~~~~~al~~~d-----~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~---l----~~li~~a 307 (358)
T TIGR01220 249 ---RFLETSTD------CVESAITAFETGD-----ITSLQKEIRRNRQELARLDDEVGVGIETEK---L----KALCDAA 307 (358)
T ss_pred ---HHHHHHHH------HHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHHhhcccCCCcCCHH---H----HHHHHHH
Confidence 11122211 2568899999999 999999999999988874 4999999 9 9999999
Q ss_pred HhCCCCcccccCCCCCceeec
Q 021052 297 RKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 297 ~~~Ga~GakltGaG~GG~v~~ 317 (318)
++.|+ |+|+||||+|||+++
T Consensus 308 ~~~ga-~aKlsGAGgGg~~ia 327 (358)
T TIGR01220 308 EAYGG-AAKPSGAGGGDCGIA 327 (358)
T ss_pred hhcCc-eecCCCCCCcCEEEE
Confidence 99998 999999999999974
No 16
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=224.76 Aligned_cols=200 Identities=19% Similarity=0.148 Sum_probs=160.5
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEee
Q 021052 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 14 G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.+++...+|+|+|+|||||+|++||++.|+..+.|..+++++||+.|+.+|+ ..+.+.|.+||++++||+.+.+-|...
T Consensus 89 ~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l~~~gG~QDqYaaA~GGFnfMEf~~~ 168 (333)
T COG2605 89 PIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDLKIVGGKQDQYAAAFGGFNFMEFRGN 168 (333)
T ss_pred ceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccccccccHHHHHhCCceEEEEcCC
Confidence 3999999999999999999999999999999999999999999999999998 999999999999999997554333322
Q ss_pred CCCeEEEeecCC------CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhh
Q 021052 93 NPIRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166 (318)
Q Consensus 93 ~~~~~~~~~~~~------~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~ 166 (318)
....+.++.+.. ..++++++||+. |++++++.++. +.+-+
T Consensus 169 ~~V~v~pL~i~~e~~~Ele~~~lL~yTGi~------------------R~Ss~V~~dQ~--------------~~~~~-- 214 (333)
T COG2605 169 GEVVVNPLRINRERTAELEARLLLYYTGIT------------------RQSSEVIEDQV--------------RNVVD-- 214 (333)
T ss_pred CcEEEeecccchhHHHHHHhceEEEEeccc------------------cchhHHHHHHH--------------HHhhc--
Confidence 235567777653 478999999983 44556666541 11100
Q ss_pred hhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021052 167 VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 246 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~a 246 (318)
+ .++ -.++.|-+.+- +.+++++
T Consensus 215 ---------------------~----~~~-------------------------------~~e~~~~mk~~--A~~~~~a 236 (333)
T COG2605 215 ---------------------G----DEE-------------------------------TLEALHEMKAL--AYEMKDA 236 (333)
T ss_pred ---------------------c----cHH-------------------------------HHHHHHHHHHH--HHHHHHH
Confidence 0 000 12234555543 5689999
Q ss_pred HhcCCCchHHHHHHHHHHHHHhHhhhhh-ccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 247 VSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 247 l~~~d~~~~~~~~lG~Lm~~sh~slr~~-~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
|-.+| +..||++|+.+|+..+.+ -.+|+|. + |++++.|+++||+|+|++|||.||.+.|
T Consensus 237 l~~nd-----~~~f~~~l~~gW~~KK~ls~~ISN~~---I----Driy~~A~~~GA~~gKl~GaG~gGFllf 296 (333)
T COG2605 237 LVRND-----IPEFGQILDRGWEAKKKLSSRISNDA---I----DRIYELALKNGAYGGKLSGAGGGGFLLF 296 (333)
T ss_pred HHhcc-----hHHHHHHHHhHHHhhhhhccCcCcHH---H----HHHHHHHHhcCchhceeeccCCccEEEE
Confidence 99999 999999999999987775 3889999 9 9999999999999999999999999876
No 17
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=99.96 E-value=2.1e-28 Score=257.11 Aligned_cols=197 Identities=13% Similarity=0.073 Sum_probs=147.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.|++|.+.|+||+|+|||||||++||++.|++++++.++++++++++|+.+|++.+.++|++||+++++|+ +.++++
T Consensus 725 ~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~ela~~A~~~E~~lhg~~g~qDq~~a~~GG---~~~i~~ 801 (974)
T PRK13412 725 SGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNEICNRTLVLEQLLTTGGGWQDQYGGVLPG---VKLLQT 801 (974)
T ss_pred CCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCchhhhhhHhcCC---eEEEEe
Confidence 59999999999999999999999999999999999999999999999999999444445559999999974 666765
Q ss_pred CCC-----eEEEeecCC------CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 021052 93 NPI-----RTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (318)
Q Consensus 93 ~~~-----~~~~~~~~~------~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd 161 (318)
.+. .+++++.+. +-++++++||+ ++.+. +++.+.. +.
T Consensus 802 ~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGi---tR~T~---------------~iV~~Vv--------------~~ 849 (974)
T PRK13412 802 GAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGI---TRTAK---------------GILAEIV--------------RS 849 (974)
T ss_pred cCCcccCcceeecCcchhhhhhccCcEEEEECCC---eeeHH---------------HHHHHHH--------------HH
Confidence 541 234444332 34799999999 35542 3332210 00
Q ss_pred hhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021052 162 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~ 241 (318)
.. .+ + ..+.+..+-+.+. +.
T Consensus 850 ~~-----------------------~~----------------~-------------------~~~~~~l~~ig~L--a~ 869 (974)
T PRK13412 850 MF-----------------------LN----------------S-------------------TAHLQLLHEMKAH--AL 869 (974)
T ss_pred HH-----------------------hC----------------c-------------------HHHHHHHHHHHHH--HH
Confidence 00 00 0 0011112223332 56
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhh-ccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 242 AFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 242 ~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~-~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
++.++|+++| +++||+||+++|..++.+ .+||+|+ + |.|+++|++ |++|+|+||||+|||+++
T Consensus 870 ea~~ALe~gD-----~~~LG~LMn~~w~ll~~L~~GVSnp~---L----D~Li~~A~~-gAlGaKLTGAGGGGcvI~ 933 (974)
T PRK13412 870 DMYEAIQRGE-----FEEFGRLVGKTWEQNKALDSGTNPAA---V----EAIIELIKD-YTLGYKLPGAGGGGYLYM 933 (974)
T ss_pred HHHHHHHcCC-----HHHHHHHHHHHHHHHHhccCCCCCHH---H----HHHHHHHHc-CCcEEEecccCcccEEEE
Confidence 8999999999 999999999999866653 3999999 9 999999965 799999999999999964
No 18
>PRK03926 mevalonate kinase; Provisional
Probab=99.96 E-value=8.5e-28 Score=226.66 Aligned_cols=192 Identities=19% Similarity=0.104 Sum_probs=146.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i 90 (318)
.+|++|.+.++||+++|||||||++||++.|++++++.++++++++++|..+|+ ++|.++| +|++++++|+ ++++
T Consensus 73 ~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~~sg-~D~~~~~~Gg---~~~~ 148 (302)
T PRK03926 73 KDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGAASP-TDTYVSTMGG---FVTI 148 (302)
T ss_pred CCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCCCch-HHHHHHhcCC---eEEE
Confidence 359999999999999999999999999999999999999999999999999998 9999999 6999999984 3444
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
+... +++. +++.+++++|+. +++|. .+.+.+.. +++..+
T Consensus 149 ~~~~----~l~~-~~~~~vl~~~~~---~~sT~------------~~~~~~~~---------------~~~~~~------ 187 (302)
T PRK03926 149 PDRK----KLPF-PECGIVVGYTGS---SGSTK------------ELVANVRK---------------LKEEYP------ 187 (302)
T ss_pred cCCC----cCCC-CCceEEEEECCC---CCcHH------------HHHHHHHH---------------HHHhCH------
Confidence 3221 3443 378899999987 34542 11111111 011000
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
+ .+++..+.+.+. +.++.++++++
T Consensus 188 -----------------------------------~-------------------~~~~~~~~~~~~--~~~~~~al~~~ 211 (302)
T PRK03926 188 -----------------------------------E-------------------LIEPILSSIGKI--SEKGEELILSG 211 (302)
T ss_pred -----------------------------------H-------------------HHHHHHHHHHHH--HHHHHHHHhcC
Confidence 0 011111112221 34566888899
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
| ++.||++|+++|. +.+.+++++|+ + +++++.+++.|++|+||||+|+|||++.
T Consensus 212 d-----~~~l~~~~~~~~~-~~~~~~~~~p~---l----~~l~~~~~~~ga~ga~lSGaG~Gg~v~~ 265 (302)
T PRK03926 212 D-----YVSLGELMNINQG-LLDALGVSTKE---L----SELIYAARTAGALGAKITGAGGGGCMVA 265 (302)
T ss_pred C-----HHHHHHHHHHHHH-HHHhcCCCCHH---H----HHHHHHHHhCCCceeeeccCCCCCEEEE
Confidence 9 9999999999995 55678999999 9 9999999999999999999999999874
No 19
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.94 E-value=1.5e-26 Score=215.87 Aligned_cols=196 Identities=19% Similarity=0.133 Sum_probs=139.0
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH--------H---HHHHHHHHHHH-HhCCCCCcccceeeeec
Q 021052 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK--------K---EIAQLTCECEQ-FIGTQSGGMDQAISIMA 82 (318)
Q Consensus 15 ~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~--------~---ela~la~~~E~-~~G~~~G~~D~~~~~~G 82 (318)
+++.++|.+|+|+|||||||+.|++++++..++|.--++ . -+-++|+..|+ +||+||| .|+++|+||
T Consensus 132 ~~v~v~SelP~GaGLGSSAa~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSG-iDnaV~t~G 210 (397)
T KOG1511|consen 132 LTVVVDSELPLGAGLGSSAAISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSG-IDNAVCTYG 210 (397)
T ss_pred eEEEEeccCCCcCCcchhHHHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcc-cchhhhccC
Confidence 999999999999999999999999999999998863222 3 34588999998 9999999 699999998
Q ss_pred cCCeEEEEeeCCC-eEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchh
Q 021052 83 KSGFAELIDFNPI-RTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSD 161 (318)
Q Consensus 83 ~~g~~~~id~~~~-~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd 161 (318)
+ + +.|++. .++.+...+.++++++||.++ ++|+ ++++.- +.+.+
T Consensus 211 g---~--i~f~kg~~~~~Lk~~~~L~illtnTrv~---RnTk---------------~lVa~V------------r~~~~ 255 (397)
T KOG1511|consen 211 G---L--ISFKKGVEIESLKHLPPLRILLTNTRVP---RNTK---------------ALVAGV------------RELLE 255 (397)
T ss_pred c---e--EEeecCccceecccCCCceEEEEccccC---ccHH---------------HHHHHH------------HHHHH
Confidence 5 3 444443 667777667899999999995 5553 222211 01111
Q ss_pred hhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHH
Q 021052 162 VEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH 241 (318)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~ 241 (318)
.. ||. .+.+...+.|. ..
T Consensus 256 kf-----------------------------------------Pev-------------------i~~i~~aid~i--s~ 273 (397)
T KOG1511|consen 256 KF-----------------------------------------PEV-------------------IKAIFDAIDEI--SL 273 (397)
T ss_pred hh-----------------------------------------hHH-------------------HHHHHHHHHHH--HH
Confidence 11 111 11111122222 34
Q ss_pred HHHHHHhcCC-Cch-HHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 242 AFKDTVSSNL-SEE-DKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 242 ~~~~al~~~d-~~~-~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
++..++.+.+ ..+ ..-++|.+||.-+|. |-+.+|||+|+ + |.++.++++.| +.+||||||+|||+++
T Consensus 274 ea~~il~~e~~~~~~~~Eq~L~eLi~iNq~-LL~alGVsH~~---l----e~v~~~t~k~g-i~sKLTGAGgGGc~it 342 (397)
T KOG1511|consen 274 EAVWILQRENDEFSSPKEQKLEELIRINQD-LLDALGVSHPS---L----ELVCTTTRKLG-IHSKLTGAGGGGCVIT 342 (397)
T ss_pred HHHHHHhcccccCCCcHHHHHHHHHHHhHH-HHHHhCCCcHH---H----HHHHHHHHHhC-cceecccCCCCceEEE
Confidence 5666666422 100 111259999999996 44568999999 9 99999999999 6789999999999985
No 20
>PLN02451 homoserine kinase
Probab=99.87 E-value=5.4e-21 Score=185.41 Aligned_cols=187 Identities=20% Similarity=0.209 Sum_probs=140.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCccccee-eeeccCCeEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAI-SIMAKSGFAEL 89 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~-~~~G~~g~~~~ 89 (318)
.+|++|.+.++||+++|||||||+++|++.|+++++|.+++++++++++.++|. +.|. . +||++ +++|+ +++
T Consensus 132 ~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~~la~~~E~~v~g~--h-~Dnva~a~~GG---~v~ 205 (370)
T PLN02451 132 SVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLVLAGLESEAKVSGY--H-ADNIAPALMGG---FVL 205 (370)
T ss_pred CCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhchhcCC--C-ccchhHhhcCC---EEE
Confidence 469999999999999999999999999999999999999999999999999997 7775 2 79986 57763 444
Q ss_pred E-eeCCCeEEEeecC--CCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhh
Q 021052 90 I-DFNPIRTTDVQLP--AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLC 166 (318)
Q Consensus 90 i-d~~~~~~~~~~~~--~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~ 166 (318)
. ...+.+..++++| ++++++++++++. .+| .+++ +.+.+.+ .
T Consensus 206 ~~~~~~~~~~~~~~p~~~~~~~Vlv~P~~~---~sT---------~~ar---~~lp~~~------------~-------- 250 (370)
T PLN02451 206 IRSYEPLHLIPLRFPSAKDLFFVLVSPDFE---APT---------KKMR---AALPKEI------------P-------- 250 (370)
T ss_pred EEecCCCeEEEeecCCCCCeEEEEEcCCCC---ccH---------HHHH---HHHhhhc------------c--------
Confidence 4 3444556666666 5799999999872 333 1222 2232210 0
Q ss_pred hhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 021052 167 VAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDT 246 (318)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~a 246 (318)
+..++. ...|+.....+
T Consensus 251 --------------------------------------------------------------~~~~v~-~~~~~~~l~~a 267 (370)
T PLN02451 251 --------------------------------------------------------------MKHHVW-NCSQAAALVAA 267 (370)
T ss_pred --------------------------------------------------------------hhhHHH-HHHHHHHHHHH
Confidence 000111 12344566788
Q ss_pred HhcCCCchHHHHHHHHHHHHH--hHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 247 VSSNLSEEDKLKKLGDLMNDS--HHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 247 l~~~d~~~~~~~~lG~Lm~~s--h~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+.++| ++.++++|+.. |+..+. .++|+ + +++++.+++.|++|++|||+|-..+.++
T Consensus 268 l~~~d-----~~~l~~~m~nD~~~e~~r~---~~~P~---l----~~l~~~~~~~GA~ga~mSGSGptvfal~ 325 (370)
T PLN02451 268 ILQGD-----AVLLGEALSSDKIVEPTRA---PLIPG---M----EAVKKAALEAGAYGCTISGAGPTAVAVI 325 (370)
T ss_pred HHcCC-----HHHHHHHHHHHHHhHHHHh---hhCcc---H----HHHHHHHHHCCCeEEEEEccchheEEEE
Confidence 99999 99999999864 666654 45999 9 9999999999999999999999777665
No 21
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.81 E-value=3.7e-19 Score=166.39 Aligned_cols=176 Identities=18% Similarity=0.154 Sum_probs=140.2
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccce-eeeeccCCeEEEEeeC
Q 021052 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAELIDFN 93 (318)
Q Consensus 15 ~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~-~~~~G~~g~~~~id~~ 93 (318)
++|.++++||+++|||||||.+||.+.|+|++++.+++++++.+++...|. --||. .|++|+ ..+..+..
T Consensus 78 ~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~Eg-------HpDNVapa~lGG--~~l~~~~~ 148 (299)
T COG0083 78 VKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEG-------HPDNVAPAVLGG--LVLVEEES 148 (299)
T ss_pred EEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcC-------CCchHHHHhhCC--EEEEeecC
Confidence 999999999999999999999999999999999999999999999999994 14775 467774 23333334
Q ss_pred CCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhccC
Q 021052 94 PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACKN 173 (318)
Q Consensus 94 ~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~ 173 (318)
++...++++|.++.++++.|+. +-+| .| |-++|.+++
T Consensus 149 ~~~~~~v~~~~~~~~v~~iP~~---e~sT---------~~---aR~vLP~~~---------------------------- 185 (299)
T COG0083 149 GIISVKVPFPSDLKLVVVIPNF---EVST---------AE---ARKVLPKSY---------------------------- 185 (299)
T ss_pred CceEEEccCCcceEEEEEeCCc---cccH---------HH---HHHhccccC----------------------------
Confidence 5677788888899999999976 2333 23 335666532
Q ss_pred CCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 021052 174 GSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLSE 253 (318)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~~ 253 (318)
+. ...+....|+.-++.+|.++|
T Consensus 186 ------------------~~-------------------------------------~daV~n~s~~a~lv~al~~~~-- 208 (299)
T COG0083 186 ------------------SR-------------------------------------KDAVFNLSRAALLVAALLEGD-- 208 (299)
T ss_pred ------------------CH-------------------------------------HHHHHHHHHHHHHHHHHHcCC--
Confidence 11 123444567788999999999
Q ss_pred hHHHHHHHHHHHH-HhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCC
Q 021052 254 EDKLKKLGDLMND-SHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQ 312 (318)
Q Consensus 254 ~~~~~~lG~Lm~~-sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~G 312 (318)
.+.+...|++ -|+.+|..+ .|. + +++.+.+.+.|++|+-++|||=.
T Consensus 209 ---~~l~~~~~~D~ihepyR~~L---~P~---~----~~v~~~a~~~gA~g~~lSGAGPT 255 (299)
T COG0083 209 ---PELLRAMMKDVIHEPYRAKL---VPG---Y----AEVREAALEAGALGATLSGAGPT 255 (299)
T ss_pred ---HHHHHHHhccccchhhhhhh---Ccc---H----HHHHHHHhhCCceEEEEecCCCe
Confidence 7888888887 699999987 899 9 99999999999999999999943
No 22
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.81 E-value=5.7e-19 Score=163.84 Aligned_cols=99 Identities=23% Similarity=0.157 Sum_probs=80.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhC-CCCCcccceeeeeccCCeEEEE
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIG-TQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G-~~~G~~D~~~~~~G~~g~~~~i 90 (318)
+|+++.+.++||+++|||||||+++|++.|++++++.++++++++++++++|+ .++ ..+|.+|++++++|+ +++.
T Consensus 63 ~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~~~~~D~~~~~~gG---~~~~ 139 (261)
T TIGR01920 63 DGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVTGAFDDAAASYLGG---IVIT 139 (261)
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHhCC---EEEE
Confidence 68999999999999999999999999999999999999999999999999998 443 456667888899974 5676
Q ss_pred eeCCCeEE-EeecCCCcEEEEEEcCC
Q 021052 91 DFNPIRTT-DVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 91 d~~~~~~~-~~~~~~~~~~vl~~sg~ 115 (318)
+.++.... ..++ +++.+++++++.
T Consensus 140 ~~~~~~~~~~~~~-~~~~~vv~~p~~ 164 (261)
T TIGR01920 140 DNRRMKILKRDKL-EGCTAAVLVPKE 164 (261)
T ss_pred eCCCceEEEecCC-CCceEEEEECCC
Confidence 76554433 3333 345778877765
No 23
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.80 E-value=1.9e-18 Score=163.35 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=74.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccce-eeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~-~~~~G~~g~~~~id 91 (318)
+|++|.+.++||+++|||||||.++|++.|++++++.++++++++++|.++|. -.|+. ++++|+ +.+..
T Consensus 79 ~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E~-------h~Dnv~~~l~GG---~~~~~ 148 (302)
T TIGR00191 79 PPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELEG-------HPDNVAPALLGG---FQLAF 148 (302)
T ss_pred CCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhcC-------CcccHHHHhccC---EEEEE
Confidence 68999999999999999999999999999999999999999999999999994 14654 456663 33333
Q ss_pred eCCCeEEEeecC--CCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLP--AGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~--~~~~~vl~~sg~ 115 (318)
.+......++++ +++.+++++|+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~~vl~~p~~ 174 (302)
T TIGR00191 149 VEDDKLEVLKIPIFSKLDWVLAIPNI 174 (302)
T ss_pred EcCCceEEEEeCCCCCEEEEEEECCC
Confidence 333334455444 689999999987
No 24
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=3e-18 Score=160.61 Aligned_cols=173 Identities=12% Similarity=0.066 Sum_probs=126.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.++|++.|++++++.++++++++++|.++| .|...+++|+ +.+.+.
T Consensus 83 ~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~Gg---~~~~~~ 150 (286)
T PRK00128 83 QGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIG---------SDVPFCIYGG---TALATG 150 (286)
T ss_pred CCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhC---------CCCCeEeeCC---eEEEec
Confidence 5899999999999999999999999999999999999999999999998885 3777778763 445544
Q ss_pred CCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcc
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 172 (318)
+.....+++.++++.+++++|+. +.+|. ++.+. ++ ..
T Consensus 151 ~g~~~~~~~~~~~~~~vv~~p~~---~~~T~---------------~~~~~---------------~~-~~--------- 187 (286)
T PRK00128 151 RGEKITPLKSPPSCWVVLAKPDI---GVSTK---------------DVYKN---------------LD-LD--------- 187 (286)
T ss_pred CCcccccCCCCCCcEEEEEcCCC---CCCHH---------------HHHhc---------------Cc-cc---------
Confidence 43445556555678899999876 23332 11110 00 00
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021052 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~ 252 (318)
. .. ...+..+..++..+|
T Consensus 188 ---------------------------------~-------------------~~---------~~~~~~~~~~l~~~d- 205 (286)
T PRK00128 188 ---------------------------------K-------------------IS---------HPDTEKLIEAIEEGD- 205 (286)
T ss_pred ---------------------------------c-------------------cc---------CcchHHHHHHHhcCC-
Confidence 0 00 001345677788899
Q ss_pred chHHHHHHHHHHHHHhHhhhhhccCC-CccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 253 EEDKLKKLGDLMNDSHHSCSVLYECS-ITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 253 ~~~~~~~lG~Lm~~sh~slr~~~~vS-~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
++.++++|+. .+ ..+.++ +|+ + +++++.+++.|++|++|||+|...++++
T Consensus 206 ----~~~~~~~~~n---~l-~~~~~~~~p~---l----~~l~~~~~~~Ga~g~~lSGsG~sv~~l~ 256 (286)
T PRK00128 206 ----YQGICANMGN---VL-ENVTLKKYPE---I----AKIKERMLKFGADGALMSGSGPTVFGLF 256 (286)
T ss_pred ----HHHHHHhccC---cH-HHHHHhhChH---H----HHHHHHHHhcCCCeeEEcccCccEEEEe
Confidence 9999999862 23 345554 899 9 9999999999999999999995444444
No 25
>PRK01212 homoserine kinase; Provisional
Probab=99.77 E-value=1.1e-17 Score=157.75 Aligned_cols=175 Identities=19% Similarity=0.154 Sum_probs=126.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE-
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI- 90 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i- 90 (318)
+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|..+|. ..+.|. +++|+ +.+.
T Consensus 80 ~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~e~~~ddv~~-------~l~GG---~~~~~ 149 (301)
T PRK01212 80 PGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEGEGHPDNVAP-------ALLGG---LVLAL 149 (301)
T ss_pred CCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCHHHHHH-------HHhCC---EEEEE
Confidence 58999999999999999999999999999999999999999999999999995 333332 34442 2333
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
+..+....++++|+++++++++|+.. .+| ..+.+.+.+.
T Consensus 150 ~g~g~~~~~~~~~~~~~~vlv~p~~~---~sT------------~~a~~~l~~~-------------------------- 188 (301)
T PRK01212 150 EENGVISVKIPVFDDLKWVVAIPNIE---LST------------AEARAVLPKQ-------------------------- 188 (301)
T ss_pred ECCceEEEEecCCCCeEEEEEECCCc---CCH------------HHHHHhCcCc--------------------------
Confidence 23445567777777889999998762 232 1111111100
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
+. + .+.+.+..|+..+..++.++
T Consensus 189 --------------------~~----------------------------------~---~~~~~~~~~~~~l~~al~~~ 211 (301)
T PRK01212 189 --------------------YS----------------------------------L---KDAVFNSSRAALLVAALYTG 211 (301)
T ss_pred --------------------CC----------------------------------H---HHHHHHHHHHHHHHHHHhhC
Confidence 00 0 01122234566788889999
Q ss_pred CCchHHHHHHHHHHHH-HhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCC
Q 021052 251 LSEEDKLKKLGDLMND-SHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPP 310 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~-sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG 310 (318)
| ++.++++|+. -|+.+|.. .+|+ + +.+++.+++.|++|++|||+|
T Consensus 212 d-----~~~~~~~~~~~~~~~~~~~---~~p~---~----~~i~~~~~~~Ga~g~~~SGsG 257 (301)
T PRK01212 212 D-----YELAGRAMKDVLHEPYRAK---LIPG---F----AEVRQAALEAGALGAGISGAG 257 (301)
T ss_pred C-----HHHHHHHhchhheHHhHHh---hCCC---H----HHHHHHHHHCCCeEEEEEchh
Confidence 9 9999999954 46655443 3799 9 999999999999999999987
No 26
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.76 E-value=1.5e-17 Score=157.15 Aligned_cols=179 Identities=12% Similarity=0.048 Sum_probs=124.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.|.++||+++|||||||.++|++.|+++++|.++++++++++|.++| .|..++++|+ +++...
T Consensus 82 ~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig---------~dv~~~~~GG---~~~~~~ 149 (300)
T PRK03188 82 PDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG---------SDVPFALLGG---TALGTG 149 (300)
T ss_pred CCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEEe
Confidence 5899999999999999999999999999999999999999999999998874 3655666653 444444
Q ss_pred CCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhcc
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFACK 172 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~ 172 (318)
+.....++..++++.++++.+.. ..+|. +.+ +.+.+. +..
T Consensus 150 ~g~~~~~~~~~~~~~~~lv~p~~---~~sT~---------~~~---~~l~~~---------------~~~---------- 189 (300)
T PRK03188 150 RGEQLAPVLARGTFHWVLAFADG---GLSTP---------AVF---RELDRL---------------REA---------- 189 (300)
T ss_pred cCCEEEECCCCCCcEEEEEeCCC---CCCHH---------HHH---Hhchhh---------------hcc----------
Confidence 43445555555566666655543 12221 111 111110 000
Q ss_pred CCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 021052 173 NGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSNLS 252 (318)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~d~ 252 (318)
+. +....++..+..++.++|
T Consensus 190 --------------------------------~~---------------------------~~~~~~~~~~~~al~~~d- 209 (300)
T PRK03188 190 --------------------------------GD---------------------------PPRLGEPDPLLAALRAGD- 209 (300)
T ss_pred --------------------------------cc---------------------------ccccccHHHHHHHHHcCC-
Confidence 00 000112456888899999
Q ss_pred chHHHHHHHHHHHHHhHhhhhhccCC-CccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeecC
Q 021052 253 EEDKLKKLGDLMNDSHHSCSVLYECS-ITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKFP 318 (318)
Q Consensus 253 ~~~~~~~lG~Lm~~sh~slr~~~~vS-~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~~ 318 (318)
++.+|++|+..-+. +..+ +|+ + +++++.+++.|++|++|||+|.+.+++++
T Consensus 210 ----~~~l~~~~~n~le~----~~~~~~p~---l----~~l~~~~~~~Galga~lSGsG~tv~~l~~ 261 (300)
T PRK03188 210 ----PAQLAPLLGNDLQA----AALSLRPS---L----RRTLRAGEEAGALAGIVSGSGPTCAFLCA 261 (300)
T ss_pred ----HHHHHHHhhCcCHH----HHHHhCch---H----HHHHHHHHHCCCCEEEEEccccceEEEeC
Confidence 99999998633222 3333 999 9 99999999999999999999998777763
No 27
>PRK01123 shikimate kinase; Provisional
Probab=99.74 E-value=2e-17 Score=155.04 Aligned_cols=98 Identities=17% Similarity=0.099 Sum_probs=79.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCC-CCCcccceeeeeccCCeEEEE
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGT-QSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~-~~G~~D~~~~~~G~~g~~~~i 90 (318)
+|++|.+.|+||+++|||||||++||++.|++++++.++++++++++|..+|+ .++. ..+..|+++++||+ +++.
T Consensus 74 ~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~d~~~~~~GG---~~~~ 150 (282)
T PRK01123 74 YGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFDDACASYFGG---VTVT 150 (282)
T ss_pred CCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchhHHHHHHhCC---EEEE
Confidence 48999999999999999999999999999999999999999999999999998 5553 35556778889974 4555
Q ss_pred eeCCCe-EEEeecCCCcEEEEEEcCC
Q 021052 91 DFNPIR-TTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 91 d~~~~~-~~~~~~~~~~~~vl~~sg~ 115 (318)
+..... ..+++ .++.+++++|+.
T Consensus 151 ~~~~~~~~~~~~--~~~~~vv~~p~~ 174 (282)
T PRK01123 151 DNREMKLLKRDE--VELDVLVLIPPE 174 (282)
T ss_pred cCCCceEEEEec--CCcEEEEEECCC
Confidence 543322 22333 358999999986
No 28
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.72 E-value=3.4e-16 Score=154.75 Aligned_cols=101 Identities=21% Similarity=0.188 Sum_probs=84.8
Q ss_pred CccEEEEEEeCC-------------------C--------CCCCCChHHHHHHHHHHHHHHHhCCCC-------------
Q 021052 12 FQLFNHINSLFF-------------------N--------LGSGLSSSTAFVCSSTVALMAAFGVEV------------- 51 (318)
Q Consensus 12 ~~G~~i~i~s~I-------------------P--------~g~GLGSSAAl~VA~~~Al~~l~g~~l------------- 51 (318)
+++++|+|.|+. + .+.|||||||++||++.||..+++..+
T Consensus 111 l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~ 190 (454)
T TIGR01219 111 LQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAKTGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCS 190 (454)
T ss_pred cCceEEEEEecCCcccccchhcccccccccccccccCCCccccCccHHHHHHHHHHHHHHHHhCCccccccccccccccc
Confidence 678999998877 2 278999999999999999999999876
Q ss_pred CHHHHHHHHHHHHH-HhCC-CCCcccceeeeeccCCeEEEEeeCCC----------------------------eEEEee
Q 021052 52 PKKEIAQLTCECEQ-FIGT-QSGGMDQAISIMAKSGFAELIDFNPI----------------------------RTTDVQ 101 (318)
Q Consensus 52 s~~ela~la~~~E~-~~G~-~~G~~D~~~~~~G~~g~~~~id~~~~----------------------------~~~~~~ 101 (318)
+++.+.++|+.+|. .+|+ +|| .|.++++||+ +++..|.+- +++++.
T Consensus 191 ~~~~i~kLA~~ah~~~qGk~GSG-~DvAaavyGg---i~Y~rfd~~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~ 266 (454)
T TIGR01219 191 DLDVIHNLAQTAHCLAQGKVGSG-FDVSAAVYGS---QRYRRFSPELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFS 266 (454)
T ss_pred CHHHHHHHHHHHHHhhcCCCCCc-hhhhhhhcCc---eEEEecChhhhhhhhccccccchhhhHHHHhccCCCCceeecc
Confidence 78999999999997 8996 688 6999999985 566666541 344677
Q ss_pred cCCCcEEEEEEcCCc
Q 021052 102 LPAGGTFVVAHSLAE 116 (318)
Q Consensus 102 ~~~~~~~vl~~sg~~ 116 (318)
+|++++|++.+++.+
T Consensus 267 lP~~l~Llvgdtg~~ 281 (454)
T TIGR01219 267 LPPLMNLFMGDPGGG 281 (454)
T ss_pred CCCCCEEEEEcCCCC
Confidence 788999999999985
No 29
>PTZ00299 homoserine kinase; Provisional
Probab=99.69 E-value=3.9e-16 Score=149.53 Aligned_cols=180 Identities=18% Similarity=0.123 Sum_probs=125.5
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHHHhCCCCCcccce-eeeeccCCeE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVP---KKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFA 87 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls---~~ela~la~~~E~~~G~~~G~~D~~-~~~~G~~g~~ 87 (318)
.+|++|.+.++||+++|||||||.+||++.|++++++.+++ ++++.++|.+.|- --||. .+++|+ .+
T Consensus 80 ~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~EG-------HpDNVapal~GG--~~ 150 (336)
T PTZ00299 80 MPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKFEG-------HPDNAAPAIYGG--IQ 150 (336)
T ss_pred CCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhhcC-------CcccHHHHHhCC--EE
Confidence 35899999999999999999999999999999999999995 7899999999982 14654 355553 22
Q ss_pred EEEeeCC--CeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhh
Q 021052 88 ELIDFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGL 165 (318)
Q Consensus 88 ~~id~~~--~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~ 165 (318)
+.....+ ....+++.|+++.++++.|...- +-+| .+.| ++|.+++
T Consensus 151 ~~~~~~~ge~~~~~i~~~~~~~~vv~iP~~~~-~~sT---------~~aR---~vLP~~v-------------------- 197 (336)
T PTZ00299 151 LVYKKDNGRFLTYRVPTPPNLSVVLFVPHNKM-KANT---------HVTR---NLIPTSV-------------------- 197 (336)
T ss_pred EEEecCCCceEEEecCCCCCeEEEEEECCCCc-cccH---------HHHH---hhCcccC--------------------
Confidence 2222122 22446676778999999886510 0011 1111 2222210
Q ss_pred hhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 021052 166 CVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKD 245 (318)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~ 245 (318)
+. .+.+....|+.....
T Consensus 198 --------------------------~~-------------------------------------~dav~n~~~~~~lv~ 214 (336)
T PTZ00299 198 --------------------------SL-------------------------------------EDAVFNISRTSILVL 214 (336)
T ss_pred --------------------------cH-------------------------------------HHHHHhhhHHHHHHH
Confidence 00 123333455566888
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhHhhhh-hccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCC
Q 021052 246 TVSSNLSEEDKLKKLGDLMNDSHHSCSV-LYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPI 311 (318)
Q Consensus 246 al~~~d~~~~~~~~lG~Lm~~sh~slr~-~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~ 311 (318)
+|.++| ++.+..+.+.-|+.+|. .+ .|+ + +.+.+.+.+.|++|+-|+|+|=
T Consensus 215 al~~~d-----~~ll~~~~D~lhep~R~~~l---iP~---~----~~v~~~~~~~Ga~g~~lSGSGP 266 (336)
T PTZ00299 215 ALSTGD-----LRMLKSCSDKLHEQQRSDAL---FPH---F----RPCVKAAREAGAHYAFLSGAGP 266 (336)
T ss_pred HHHhCC-----HHHHHhchhcccCccccccc---Ccc---H----HHHHHHHHHCCCeEEEEEchhh
Confidence 899999 88886643447877773 43 899 9 9999999999999999999983
No 30
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.68 E-value=7.2e-16 Score=146.50 Aligned_cols=92 Identities=15% Similarity=0.066 Sum_probs=73.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.+|++|.|.++||.++|||||||.++|++.|++++++.++++++++++|.++| .|-..+++|+ .++..
T Consensus 84 ~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~g---------~dv~~~~~GG--~~~~~- 151 (312)
T PRK02534 84 EGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAELG---------SDVPFCIAGG--TQLCF- 151 (312)
T ss_pred CCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCcEEeECC--eEEEE-
Confidence 36899999999999999999999999999999999999999999999998886 2545666663 22222
Q ss_pred eCCCeEEEeecCCCcEEEEE-EcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVA-HSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~-~sg~ 115 (318)
.+.....+++.|+++.++++ +++.
T Consensus 152 ~~g~~~~~~~~~~~~~~vv~~~p~~ 176 (312)
T PRK02534 152 GRGEILEPLPDLDGLGVVLAKYPSL 176 (312)
T ss_pred CCCCEeEECCCCCCcEEEEEECCCC
Confidence 23334667777778999887 6876
No 31
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.64 E-value=4.8e-15 Score=139.81 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=75.2
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.+|++|.+.++||+++|||||||.++|++.|++++++.++++++++++|..+| .|...+++|+ +.+..
T Consensus 84 ~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg---------~Dv~~~~~gg---~~~~~ 151 (293)
T TIGR00154 84 LDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLG---------ADVPFFVSGH---AAFAT 151 (293)
T ss_pred CCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcceEEECC---eEEEE
Confidence 46899999999999999999999999999999999999999999999998874 4766777763 44444
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
...-...+++.++++.+++++|++
T Consensus 152 g~ge~~~~l~~~~~~~~vl~~p~~ 175 (293)
T TIGR00154 152 GVGEIITPFEDPPEKWVVIAKPHV 175 (293)
T ss_pred ecCcEEEECCCCCCcEEEEEcCCC
Confidence 333345556555678899999987
No 32
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.63 E-value=3.1e-15 Score=140.20 Aligned_cols=91 Identities=12% Similarity=0.088 Sum_probs=73.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|+++.+.++||+++|||||||.++|++.+++++++.+++++++.++|..+ | .|...+++|+ ..+...
T Consensus 84 ~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~--------G-~Dv~~~l~gg---~~~~~g 151 (280)
T PRK14614 84 VGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKL--------G-ADVPFFIFKK---TALAEG 151 (280)
T ss_pred CceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--------C-CCcceeeeCC---cEEEEE
Confidence 589999999999999999999999999999999999999999999998765 3 3766666653 333333
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+.-...+++.++++.+++++|++
T Consensus 152 ~ge~~~~l~~~~~~~ivl~~p~~ 174 (280)
T PRK14614 152 IGDKLTAVEGVPPLWVVLVNPGL 174 (280)
T ss_pred cCceeEECCCCCCcEEEEECCCC
Confidence 33345566655678899999987
No 33
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.60 E-value=2.1e-14 Score=134.15 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=73.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.+||++.|+++++|.+++++++.++|..+|. |...+++| ++.+...
T Consensus 79 ~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~---------D~~~~~~G---g~~~~~~ 146 (275)
T PRK14611 79 INYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA---------DAPFFLKG---GFALGRG 146 (275)
T ss_pred CCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC---------CCCeeecC---CeEEEec
Confidence 58999999999999999999999999999999999999999999999998862 64445565 3444444
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
......+++.+.++.+++++|++
T Consensus 147 ~g~~~~~~~~~~~~~~vv~~p~~ 169 (275)
T PRK14611 147 IGDKLEFLEKPISREITLVYPNI 169 (275)
T ss_pred cCceeEECCcCCCcEEEEEeCCC
Confidence 33345555544566899999988
No 34
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.59 E-value=2e-14 Score=135.04 Aligned_cols=92 Identities=13% Similarity=0.067 Sum_probs=68.0
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeee-eccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISI-MAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~-~G~~g~~~~i 90 (318)
.+|++|.|.++||+++|||||||.++|++.++++++|.++++++++++|.++|- |--+++ +| ++.+.
T Consensus 81 ~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~---------Dvp~~l~~g---g~~~~ 148 (287)
T PRK14616 81 SKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA---------DVPYFLEMK---GLAYA 148 (287)
T ss_pred CCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---------CcceEeccC---CcEEE
Confidence 368999999999999999999999999999999999999999999999999872 311111 12 12222
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCC
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
.......++++.+..+.+++++|++
T Consensus 149 ~g~g~~~~~~~~~~~~~~vvv~P~~ 173 (287)
T PRK14616 149 TGIGDELEDLQLTLPFHIVTVFPEE 173 (287)
T ss_pred EEcCceeEECCcCCCcEEEEECCCC
Confidence 1112234444444457899999987
No 35
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.59 E-value=1.6e-15 Score=111.97 Aligned_cols=67 Identities=36% Similarity=0.484 Sum_probs=61.9
Q ss_pred EEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeecc
Q 021052 16 NHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (318)
Q Consensus 16 ~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~ 83 (318)
+|.++|+||+++|||||||+++|++.+++++++.++++++++++++.+|+..|.++| +|+++++||+
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g-~d~~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSG-IDDAASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHS-HHHHHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCCh-hhHHHHHhCc
Confidence 689999999999999999999999999999999999999999999999983399988 6778888874
No 36
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.56 E-value=6.3e-14 Score=130.69 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=72.6
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.++|++.+++++++.+++++++.++|..+ | .|...+.+| +..+...
T Consensus 81 ~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~i--------G-aDvpffl~g---~~a~~~G 148 (269)
T PRK14609 81 PPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATL--------G-ADCAFFIRN---KPVYATG 148 (269)
T ss_pred CCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--------C-CCceEEccC---CCEEEEE
Confidence 589999999999999999999999999999999999999999999999877 3 476555544 2334333
Q ss_pred CCCeEEEeecC-CCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLP-AGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~-~~~~~vl~~sg~ 115 (318)
+.....+++.+ +++.+++++|++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vlv~P~~ 172 (269)
T PRK14609 149 IGDIFSPIDLSLSGYYIALVKPDI 172 (269)
T ss_pred eCCeeEECCCCCCCCEEEEECCCC
Confidence 34455666543 568899999987
No 37
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.56 E-value=4.4e-14 Score=133.10 Aligned_cols=92 Identities=10% Similarity=0.044 Sum_probs=74.2
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.+|++|.+.++||+++|||||||.+||++.+++++++.+++++++.++|..+| .|-..+++|+ ..+..
T Consensus 88 ~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig---------~dv~~~l~gg---~~~~~ 155 (290)
T PRK14608 88 LPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLG---------ADVPVCLDSR---PLIMR 155 (290)
T ss_pred CCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCcchhhcCC---eEEEE
Confidence 36899999999999999999999999999999999999999999999999874 3666666653 33433
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
.......+++.++++.+++++|+.
T Consensus 156 g~g~~~~~l~~~~~~~~vv~~p~~ 179 (290)
T PRK14608 156 GIGEELTPLPGLPSLPAVLVNPGV 179 (290)
T ss_pred ecCCEeEECCCCCCcEEEEECCCC
Confidence 333345566544578899999987
No 38
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.52 E-value=1.2e-12 Score=125.14 Aligned_cols=93 Identities=17% Similarity=0.147 Sum_probs=73.6
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe-
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID- 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id- 91 (318)
+|++|.|.++||.++|||||||+++|++.|++++++.+++++++++++.+.| .+| .|.+.+.+|+ +++..
T Consensus 81 ~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge-----~s~-~~va~~~~GG---~vv~~G 151 (324)
T TIGR00144 81 EGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGG-----TSG-IGVASFEDGG---FIVDGG 151 (324)
T ss_pred CCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCC-----CCc-cceeeeeeCC---EEEECC
Confidence 5899999999999999999999999999999999999999999999987544 455 4566777764 33321
Q ss_pred --eC---------------CCeEEEeecCCCcEEEEEEcCC
Q 021052 92 --FN---------------PIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 --~~---------------~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+. +..+.++++| +|+++++.+..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-~~~~vlviP~~ 191 (324)
T TIGR00144 152 HSSKEKSDFLPSSASSAKPAPVIARYDFP-DWNIILAIPEI 191 (324)
T ss_pred cccccccccCcccccCCCCCCeEEecCCC-CcEEEEEecCC
Confidence 11 1225566676 89999999876
No 39
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.51 E-value=3.2e-13 Score=127.55 Aligned_cols=91 Identities=15% Similarity=0.012 Sum_probs=68.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.++|++.+++++++.+++.++++++|...|- ..|.-.... .+..++.|
T Consensus 87 ~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~ga--DvPffl~gg-~a~~~G~G------- 156 (296)
T PRK14615 87 PPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVGA--DVPFFLHNV-PCRATGIG------- 156 (296)
T ss_pred CCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC--CCeeeccCC-CEEEEeeE-------
Confidence 68999999999999999999999999999999999999999999999999874 122211111 12222211
Q ss_pred CCCeEEEeec-CCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQL-PAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~-~~~~~~vl~~sg~ 115 (318)
...+++++ ++++.+++++|++
T Consensus 157 --e~~~~l~~~~~~~~~vl~~P~~ 178 (296)
T PRK14615 157 --EILTPVALGLSGWTLVLVCPEV 178 (296)
T ss_pred --eEEEECCCCCCCcEEEEECCCC
Confidence 23445544 3467899999988
No 40
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.45 E-value=5.8e-13 Score=124.53 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=64.1
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.+||++.+++++++.+++. .+++...| .|-..+.+|+ +.+...
T Consensus 82 ~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~l---~~ia~~~g---------~dv~~~~~GG---~~~~~g 146 (276)
T PRK14612 82 GGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVDL---PALALTLG---------ADVPFFLLGG---AAEARG 146 (276)
T ss_pred CCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChHH---HHHHHHhC---------CCcCeeeeCC---eEEEEe
Confidence 58999999999999999999999999999999999987754 44444432 3655566653 333332
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+.....+++. +++.+++++|++
T Consensus 147 ~g~~~~~l~~-~~~~~vv~~P~~ 168 (276)
T PRK14612 147 VGERLTPLEL-PPVPLVLVNPGV 168 (276)
T ss_pred cCccceEcCC-CCcEEEEECCCC
Confidence 2234555654 378899999987
No 41
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.45 E-value=1.3e-12 Score=123.60 Aligned_cols=88 Identities=10% Similarity=0.010 Sum_probs=62.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPK-KEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~-~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
+|++|.|.++||+++|||||||.+++++.+++..++. +. +++.++|.+.+ .| ..+++|+ +..+.+
T Consensus 92 ~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l--~~~e~L~~lA~~lG---------aD-vP~~l~G--~~a~~~ 157 (297)
T PRK14613 92 PGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF--FTSDEMQVFAKEIG---------SD-VPFFLGE--GHAFVT 157 (297)
T ss_pred CCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHhC---------Cc-cchhhcC--CeEEEe
Confidence 5899999999999999999999988888888775544 44 66777888874 37 3334442 244555
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
.......++++|+.+. +++.|++
T Consensus 158 g~Ge~~~~l~~~~~~~-vlv~P~~ 180 (297)
T PRK14613 158 GKGEIMEEIEVHKGQG-ILALTPQ 180 (297)
T ss_pred cCCcEEEEcCCCCCeE-EEEECCC
Confidence 4444566776665554 6777876
No 42
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.21 E-value=1.3e-09 Score=103.52 Aligned_cols=52 Identities=13% Similarity=0.213 Sum_probs=49.9
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E 64 (318)
.+++|.+.++||.++|||||||..+|++.|++++++.++++.+++++|.+.|
T Consensus 84 ~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gs 135 (305)
T TIGR01240 84 EKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGS 135 (305)
T ss_pred CceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999999999999999886
No 43
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.17 E-value=8.5e-10 Score=103.07 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=69.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.|.++||+++|||||||.++|++.+++++++.++++++++++|.+.| .|...+..| ...+...
T Consensus 86 ~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~ig---------aDvp~~l~g---~~~~~~g 153 (271)
T PRK00343 86 LGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLG---------ADVPVFVRG---HAAFAEG 153 (271)
T ss_pred CCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCceEEecC---CcEEEEe
Confidence 5899999999999999999999999999999999999999999999998775 353333222 2334443
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
......+++.| ...+++++|++
T Consensus 154 ~g~~~~~l~~~-~~~~vl~~p~~ 175 (271)
T PRK00343 154 IGEILTPVDLP-EKWYLVVKPGV 175 (271)
T ss_pred cCCEEEECCCC-CcEEEEEeCCC
Confidence 33445566543 45678889987
No 44
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.07 E-value=2e-09 Score=101.22 Aligned_cols=89 Identities=11% Similarity=0.011 Sum_probs=69.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.++|++.+++++++ ++.+++.+++... | .|--.+++|+ ..+...
T Consensus 83 ~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~l--------G-aDvPffl~g~---~a~~~G 148 (283)
T PRK14610 83 TNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSV--------G-SDVPACLDSK---TLFVRG 148 (283)
T ss_pred CCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------C-CCCcEEEECC---eEEEEe
Confidence 589999999999999999999999999999999996 7999999988774 5 6877777753 346555
Q ss_pred CCCeEEEeec-CCCcEEEEEEc-CC
Q 021052 93 NPIRTTDVQL-PAGGTFVVAHS-LA 115 (318)
Q Consensus 93 ~~~~~~~~~~-~~~~~~vl~~s-g~ 115 (318)
+.-+.++++. +....++++.+ ++
T Consensus 149 ~Ge~l~~l~~~~~~~~~vl~~p~~~ 173 (283)
T PRK14610 149 IGEDILLLPDLSLPTYVVLVAPKGK 173 (283)
T ss_pred cccEEEECcccCCCCeEEEEECCCC
Confidence 5556666643 22345777766 44
No 45
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.03 E-value=2.1e-10 Score=87.68 Aligned_cols=62 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhHh-hhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHS-CSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 243 ~~~al~~~d~~~~~~~~lG~Lm~~sh~s-lr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
++++|.++| ++.|+++|+++|++ ......+.+|+ + +.+++.+++.|++|++|||+|||||++
T Consensus 1 m~~al~~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~---i----~~~~~~~~~~Ga~~~~~sGsG~G~~v~ 63 (85)
T PF08544_consen 1 MIKALAEGD-----LELLGELMNENQENEPENYREVLTPE---I----DELKEAAEENGALGAKMSGSGGGPTVF 63 (85)
T ss_dssp HHHHHHTTC-----HHHHHHHHHHHHHHHHHHHTTHHHHH---H----HHHHHHHHHTTESEEEEETTSSSSEEE
T ss_pred CHHHHHCcC-----HHHHHHHHHHhhhhcchHHHHHcCHH---H----HHHHHHHHHCCCCceecCCCCCCCeEE
Confidence 467899999 99999999999975 22245777999 9 999999999999999999999999986
No 46
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.00 E-value=1.2e-08 Score=93.59 Aligned_cols=99 Identities=24% Similarity=0.227 Sum_probs=80.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCC-CCCcccce-eeeeccCCeEEEE
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGT-QSGGMDQA-ISIMAKSGFAELI 90 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~-~~G~~D~~-~~~~G~~g~~~~i 90 (318)
.|+++.++|+||.++||.||||+..|++.|+.++.|.++++.+++++..++-+-.|. -.|-.|.+ ++++| ++.+.
T Consensus 69 ~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSvTGA~DDa~AS~~G---G~~iT 145 (278)
T COG1685 69 LGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSVTGAFDDACASYLG---GIVIT 145 (278)
T ss_pred cceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceEeccchHHHHHHhC---CeEEe
Confidence 379999999999999999999999999999999999999999999999888876663 35667665 56776 47788
Q ss_pred eeCCCeEEEe-ecCCCcEEEEEEcCC
Q 021052 91 DFNPIRTTDV-QLPAGGTFVVAHSLA 115 (318)
Q Consensus 91 d~~~~~~~~~-~~~~~~~~vl~~sg~ 115 (318)
|.+..++-+. +.| ++..+|.-++.
T Consensus 146 DN~~m~Ilrr~~~~-~~~vlI~~p~~ 170 (278)
T COG1685 146 DNRKMRILRRLDLP-ELTVLILAPGE 170 (278)
T ss_pred cchhheehhccccC-CceEEEEecCC
Confidence 8877665444 333 57777777765
No 47
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=6.6e-08 Score=95.19 Aligned_cols=197 Identities=18% Similarity=0.191 Sum_probs=128.6
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHH----HHHHHHHHHHhCCCCCcccceeeeeccCCeE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEI----AQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~el----a~la~~~E~~~G~~~G~~D~~~~~~G~~g~~ 87 (318)
..||+|...|++|-|+|||.|+-++.-.++|+....+.....+.+ .--..+.|++.-+..|++||.-..|-+..
T Consensus 689 ~~GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK-- 766 (948)
T KOG4644|consen 689 CCGFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIK-- 766 (948)
T ss_pred cCceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhh--
Confidence 369999999999999999999999988889999888875444433 33444588888888999999876664321
Q ss_pred EEEeeC-----CCeEEEeecCC------CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhcc
Q 021052 88 ELIDFN-----PIRTTDVQLPA------GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKV 156 (318)
Q Consensus 88 ~~id~~-----~~~~~~~~~~~------~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~ 156 (318)
.-.|+ ....+++.+|. +-++++++||.. |.|-.+|+..
T Consensus 767 -~gr~rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKT------------------RLAkNLLQdV------------ 815 (948)
T KOG4644|consen 767 -KGRCRAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKT------------------RLAKNLLQDV------------ 815 (948)
T ss_pred -hccchhhccCCceeeeecCCHHHHHHHhhcEEEEEeCch------------------HHHHHHHHHH------------
Confidence 11222 24567788884 468899999862 3333333321
Q ss_pred ccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHH
Q 021052 157 KTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE 236 (318)
Q Consensus 157 ~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E 236 (318)
+|.....| + ...+. .|-+.|
T Consensus 816 --iRn~far~--------------------------------------~-------------------a~~Q~-ah~l~~ 835 (948)
T KOG4644|consen 816 --IRNFFARC--------------------------------------K-------------------ATKQK-AHKLAE 835 (948)
T ss_pred --HHHHHHhh--------------------------------------H-------------------HHHHH-HHHHHH
Confidence 22111000 0 01111 122222
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhh-hccCCCccchhhhccHHHHHHHHHh--CCCCcccccCCCCCc
Q 021052 237 AKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSV-LYECSITSSARVHEILISMVTIARK--PGHTPPPTTPPPIQS 313 (318)
Q Consensus 237 ~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~-~~~vS~pe~~~l~~~~d~lv~~a~~--~Ga~GakltGaG~GG 313 (318)
-+.++.+-+++|. ++.+|+++...++...- .-+|-.+. + -+|.+.... .|- .....|||+||
T Consensus 836 --~tdecAegf~kGs-----l~LlgecL~~YweqKk~MapgCEPl~---V----r~lldmLaph~hge-sgw~AGAGGGG 900 (948)
T KOG4644|consen 836 --ATDECAEGFEKGS-----LELLGECLEHYWEQKKFMAPGCEPLN---V----RELLDMLAPHKHGE-SGWAAGAGGGG 900 (948)
T ss_pred --HHHHHHHHHhcCc-----HHHHHHHHHHHHHhhhccCCCCCCCc---H----HHHHHHhccccccc-cchhccCCCCc
Confidence 2678888889999 99999999987764322 12676777 7 677766543 232 24688999999
Q ss_pred eee
Q 021052 314 KTK 316 (318)
Q Consensus 314 ~v~ 316 (318)
.++
T Consensus 901 FiY 903 (948)
T KOG4644|consen 901 FIY 903 (948)
T ss_pred EEE
Confidence 875
No 48
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=5.8e-08 Score=88.30 Aligned_cols=90 Identities=23% Similarity=0.207 Sum_probs=70.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.|.++.+.|+||.|.||+||.|-.||.++|...++|..++.-+|+++|..+| | .|. .+| +++.+||.
T Consensus 82 ~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iE-----P---tDs--iiF---~~~tlFd~ 148 (293)
T COG4542 82 TGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIE-----P---TDS--IIF---DKATLFDQ 148 (293)
T ss_pred CCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcC-----C---ccc--eec---ccceeehh
Confidence 5799999999999999999999999999999999999999999999999999 2 242 233 23666776
Q ss_pred CCCeEEE-eecCCCcEEEEEEcCC
Q 021052 93 NPIRTTD-VQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~-~~~~~~~~~vl~~sg~ 115 (318)
+..++.. ..-++.+.++++.++.
T Consensus 149 r~g~~~~~~g~~PpL~ilv~e~~~ 172 (293)
T COG4542 149 REGRVIEFLGEMPPLHILVFEGKG 172 (293)
T ss_pred ccchHHHhcCCCCceEEEEEcCCC
Confidence 6544332 2223468888888754
No 49
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=98.80 E-value=7e-07 Score=82.86 Aligned_cols=94 Identities=20% Similarity=0.213 Sum_probs=70.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.|++|.|.+.+|...||||-..+..|+..|+++++|++++-.|+|...-+ |--|| .--++--+|+ + .+|.
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgR-----G~tSg-iGv~afe~GG---F-IVDG 139 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGR-----GGTSG-IGVYAFEYGG---F-IVDG 139 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHcc-----CCccc-eeEEEEEECC---E-EEEC
Confidence 78999999999999999999999999999999999999998888754332 23344 2334444442 2 2232
Q ss_pred ------CC--Ce--EEEeecCCCcEEEEEEcCCc
Q 021052 93 ------NP--IR--TTDVQLPAGGTFVVAHSLAE 116 (318)
Q Consensus 93 ------~~--~~--~~~~~~~~~~~~vl~~sg~~ 116 (318)
+| .. +.+..+|.+|.||++.+..+
T Consensus 140 Gh~~~f~ps~~sP~I~R~dfPedW~~VlaIP~~~ 173 (312)
T COG1907 140 GHSFGFLPSSASPLIFRLDFPEDWRFVLAIPEVE 173 (312)
T ss_pred CcccCcccCCCCceeeeecCCCceEEEEEecCCC
Confidence 11 22 66778899999999998763
No 50
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.79 E-value=3.6e-08 Score=92.73 Aligned_cols=91 Identities=11% Similarity=0.069 Sum_probs=67.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||.++|++.+++++++.+++++++.++|.+.|-.+..--+ ..++.+.|
T Consensus 79 ~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGaDvPffl~--~g~a~~~G---------- 146 (288)
T PRK00650 79 TPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGMDTPFFFS--TGSALGVG---------- 146 (288)
T ss_pred CCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCcchhhhc--CceEEEEe----------
Confidence 489999999999999999999999999999999999999999999999999841111001 01122222
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
..-.+++++.++++.++++.+++
T Consensus 147 ~Ge~l~~~~~~~~~~~vlv~P~~ 169 (288)
T PRK00650 147 RGEKIIALEESVSDRYVLYFSSE 169 (288)
T ss_pred cCCEEEECcCCCCceEEEEeCCC
Confidence 12234555555567788888876
No 51
>PRK05905 hypothetical protein; Provisional
Probab=98.78 E-value=6.8e-08 Score=89.58 Aligned_cols=90 Identities=14% Similarity=0.058 Sum_probs=67.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+..+||.++||||+||=++|++.+++++++ ++.+++.+++... | .|--.+++|. +..+...
T Consensus 85 ~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~l--------G-ADVPFfl~g~--~~a~~~G 151 (258)
T PRK05905 85 NHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKL--------G-SDIPFFLSGY--KTAYISD 151 (258)
T ss_pred CCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHh--------C-CCcceEEeCC--ccEEEEe
Confidence 589999999999999999999999999999999997 7888998887765 3 4644445440 1233333
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+.-..++++.+....++++.+++
T Consensus 152 ~GE~l~pl~~~~~~~~vlv~P~~ 174 (258)
T PRK05905 152 YGSQVEDLIGQFKLTYKVIFMNV 174 (258)
T ss_pred eCceeEECCCCCCceEEEECCCC
Confidence 33456666555455688888877
No 52
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=98.75 E-value=9.2e-08 Score=89.57 Aligned_cols=92 Identities=16% Similarity=0.167 Sum_probs=73.5
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
..|++|.++.+||+++|||.-||=+.|++.+++++++..++.+||++++.+. | .|--.+++|+ ..+..
T Consensus 83 ~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~L--------G-aDVPffl~g~---tA~a~ 150 (289)
T COG1947 83 AGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRL--------G-ADVPFFLSGG---TAFAE 150 (289)
T ss_pred CCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh--------C-CCcCeeeeCC---ceEEE
Confidence 4589999999999999999999999999999999999999999999998776 4 5654555542 34444
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
.+.-+.++++-++...++++.+++
T Consensus 151 G~GE~l~~~~~~~~~~~vl~~P~v 174 (289)
T COG1947 151 GRGEKLEPLEDPPEKWYVLAKPGV 174 (289)
T ss_pred EccceeeECCCCCCceEEEEeCCC
Confidence 444566777744567788888877
No 53
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=98.71 E-value=1.3e-07 Score=87.76 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=68.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||+++|||||||-++|++.+++++++.+++++++.++|... | .|---+++|+ +..+...
T Consensus 85 ~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~l--------G-aDvPffl~~~--~~a~~~G 153 (257)
T PRK04181 85 KKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKV--------G-ADVAFFISGY--KSANVSG 153 (257)
T ss_pred CceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh--------C-CCccEEecCC--ceEEEEe
Confidence 589999999999999999999999999999999999999999999998776 3 4644444431 2233333
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+.-..++++.+.. .++++.+++
T Consensus 154 ~Ge~l~~l~~~~~-~~~lv~P~~ 175 (257)
T PRK04181 154 IGEIVEEFEEEIL-NLEIFTPNI 175 (257)
T ss_pred eCCeeEECCCCCC-eEEEECCCC
Confidence 3334566643222 488888876
No 54
>PLN02407 diphosphomevalonate decarboxylase
Probab=98.68 E-value=7e-07 Score=85.51 Aligned_cols=60 Identities=23% Similarity=0.218 Sum_probs=50.2
Q ss_pred EEEEEEe--CCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCCCcccceeeeecc
Q 021052 15 FNHINSL--FFNLGSGLSSSTAFVCSSTVALMAAFGVEVP-KKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (318)
Q Consensus 15 ~~i~i~s--~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls-~~ela~la~~~E~~~G~~~G~~D~~~~~~G~ 83 (318)
+++.|.| ++|.++||+||||..+|++.|+..+++.+++ +.++..+|+ +| || .|.- ++||+
T Consensus 104 ~~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr-----~G--SG-Sa~r-S~~Gg 166 (343)
T PLN02407 104 LHVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR-----QG--SG-SACR-SLYGG 166 (343)
T ss_pred ccEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh-----cc--Ch-HHHH-HhhCC
Confidence 3567777 9999999999999999999999999999999 999999998 34 55 3433 67763
No 55
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.27 E-value=1.9e-06 Score=78.88 Aligned_cols=52 Identities=13% Similarity=0.092 Sum_probs=45.7
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 021052 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ 65 (318)
Q Consensus 14 G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~ 65 (318)
+-++.+.+.||.++|+|||++..+|.++..++...+.+++......+..+|+
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmier 145 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIER 145 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhh
Confidence 4678899999999999999999999999999999888888888777777663
No 56
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.14 E-value=5.9e-05 Score=70.86 Aligned_cols=49 Identities=20% Similarity=0.299 Sum_probs=44.5
Q ss_pred EEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021052 15 FNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 63 (318)
Q Consensus 15 ~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~ 63 (318)
+.|.-.+|.|.++||.||||=-.|++.|++++++++.+++++-.+|++.
T Consensus 106 lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~G 154 (395)
T KOG2833|consen 106 LHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQG 154 (395)
T ss_pred EEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhcc
Confidence 5556677999999999999999999999999999999999999888765
No 57
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=98.10 E-value=7.4e-05 Score=69.14 Aligned_cols=102 Identities=18% Similarity=0.133 Sum_probs=77.0
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEeeC
Q 021052 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDFN 93 (318)
Q Consensus 14 G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~~ 93 (318)
++.+.+.+++|+|+|+|-|+|.+.+.+.|++..++.+ .++.+++|+.+|-..|+.-| |-.+.++|+ -++.+.-.
T Consensus 74 ~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~gtGLG--DVvAq~~GG--lViR~~pG 147 (283)
T COG1829 74 GVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENGTGLG--DVVAQYTGG--LVIRVKPG 147 (283)
T ss_pred CcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcCCCch--HHHHHhcCc--EEEEecCC
Confidence 4779999999999999999999999999999999866 78899999999976666444 888888874 33333322
Q ss_pred -C--CeEEEeecCCCcEEEEEEcCCccccccc
Q 021052 94 -P--IRTTDVQLPAGGTFVVAHSLAESLKAIT 122 (318)
Q Consensus 94 -~--~~~~~~~~~~~~~~vl~~sg~~~~k~~~ 122 (318)
| ..+..++.|. ++++....+.-+.|+..
T Consensus 148 ~Pg~~~vd~Ip~~~-~~V~~~~~g~l~T~~vi 178 (283)
T COG1829 148 GPGEGEVDRIPVPG-LRVITISLGELSTKSVI 178 (283)
T ss_pred CCCeEEEEEeecCC-ceEEEEEcccccHHHhh
Confidence 2 3567777776 88887777754434443
No 58
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=97.98 E-value=0.00041 Score=66.26 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=47.0
Q ss_pred cEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 021052 14 LFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCEC 63 (318)
Q Consensus 14 G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~ 63 (318)
.+.|...++.|.++||+||||...|+++|++.+++.++++.++.++|+.+
T Consensus 90 ~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g 139 (329)
T COG3407 90 KVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG 139 (329)
T ss_pred eEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh
Confidence 58888999999999999999999999999999999999999999988765
No 59
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=97.96 E-value=0.00026 Score=65.55 Aligned_cols=85 Identities=26% Similarity=0.237 Sum_probs=60.1
Q ss_pred CCCCChHHHHHHHHH--HHHHHHhCCCCCH-HHHHHHHHHHHH-HhC-CCCCcccceeeeeccCCeEEEEeeCCCeEE--
Q 021052 26 GSGLSSSTAFVCSST--VALMAAFGVEVPK-KEIAQLTCECEQ-FIG-TQSGGMDQAISIMAKSGFAELIDFNPIRTT-- 98 (318)
Q Consensus 26 g~GLGSSAAl~VA~~--~Al~~l~g~~ls~-~ela~la~~~E~-~~G-~~~G~~D~~~~~~G~~g~~~~id~~~~~~~-- 98 (318)
..|||||||+++.++ +.+....+.+++. .++.++|+.+-. -+| ..|| .|-.+++||. +++-.|.|.-..
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSG-fDiaaA~fGs---iiyrRF~p~li~~l 182 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSG-FDIAAAIFGS---IIYRRFEPGLIPKL 182 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCcc-chhhHhhhcc---eEEeecCcchhhhh
Confidence 689999999999988 3444435556665 889999999986 555 5566 7999999974 566555553222
Q ss_pred ----EeecCCCcEEEEEEcCC
Q 021052 99 ----DVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 99 ----~~~~~~~~~~vl~~sg~ 115 (318)
.+.+. ++.++..+.+.
T Consensus 183 ~qig~~nfg-~y~LmmGd~a~ 202 (337)
T COG3890 183 RQIGAVNFG-DYYLMMGDQAI 202 (337)
T ss_pred HhhCccccc-Ceeeeeccccc
Confidence 22222 68888888766
No 60
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=96.77 E-value=0.077 Score=50.68 Aligned_cols=59 Identities=24% Similarity=0.335 Sum_probs=43.8
Q ss_pred CCCCCChHHHHHHHHHHHHHHHhCC----------CCC---HHHHHHHHHHHHH-HhCCCCCcccceeeeecc
Q 021052 25 LGSGLSSSTAFVCSSTVALMAAFGV----------EVP---KKEIAQLTCECEQ-FIGTQSGGMDQAISIMAK 83 (318)
Q Consensus 25 ~g~GLGSSAAl~VA~~~Al~~l~g~----------~ls---~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~ 83 (318)
+..|||||||++.+++.++.+.++. +++ .+-+-.+|+.+-. -+|.-..+.|-.+++||.
T Consensus 151 ~KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQGKvGSGFDV~aA~yGS 223 (459)
T KOG4519|consen 151 AKTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQGKVGSGFDVSAAVYGS 223 (459)
T ss_pred cccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhcCCccCCcceehhhccc
Confidence 4689999999999999888888864 122 2344577777765 677665558999999974
No 61
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=44.66 E-value=62 Score=30.05 Aligned_cols=60 Identities=17% Similarity=0.196 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHH-----------H-HHHHHHHHHHhcCCCchHH
Q 021052 189 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE-----------A-KRVHAFKDTVSSNLSEEDK 256 (318)
Q Consensus 189 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E-----------~-~Rv~~~~~al~~~d~~~~~ 256 (318)
.+++.+|+.+.+|.+.... .....|++..+.+ . ..+..|.+|+++||
T Consensus 123 ~g~s~~EIA~~lg~s~~tV----------------r~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gD----- 181 (281)
T TIGR02957 123 FDYPYEEIASIVGKSEANC----------------RQLVSRARRHLDARRPRFEVSREESRQLLERFVEAAQTGD----- 181 (281)
T ss_pred cCCCHHHHHHHHCCCHHHH----------------HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCC-----
Confidence 4677889999888654321 1234444444433 1 22678999999999
Q ss_pred HHHHHHHHHHHhH
Q 021052 257 LKKLGDLMNDSHH 269 (318)
Q Consensus 257 ~~~lG~Lm~~sh~ 269 (318)
++.|..|+.+.=.
T Consensus 182 ~~~l~~lL~~dv~ 194 (281)
T TIGR02957 182 LDGLLELLAEDVV 194 (281)
T ss_pred HHHHHHHHhhceE
Confidence 9999999997543
No 62
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=42.32 E-value=67 Score=30.20 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHH------------HHHHHHHHHHHhcCCCchHH
Q 021052 189 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSE------------AKRVHAFKDTVSSNLSEEDK 256 (318)
Q Consensus 189 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E------------~~Rv~~~~~al~~~d~~~~~ 256 (318)
.+++.+++.+++|.+.... .....|++.-+.+ ...+..|.+|+++||
T Consensus 133 ~g~s~~EIA~~Lgis~~tV----------------r~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~f~~a~~~gd----- 191 (290)
T PRK09635 133 FGLPYQQIATTIGSQASTC----------------RQLAHRARRKINESRIAASVEPAQHRVVTRAFIEACSNGD----- 191 (290)
T ss_pred hCCCHHHHHHHHCcCHHHH----------------HHHHHHHHHHHHhhCCCCCCChHHHHHHHHHHHHHHHhCC-----
Confidence 3577889999998654422 1334455544443 123678999999999
Q ss_pred HHHHHHHHHHH
Q 021052 257 LKKLGDLMNDS 267 (318)
Q Consensus 257 ~~~lG~Lm~~s 267 (318)
++.|-.|+.+.
T Consensus 192 ~~~l~~ll~~d 202 (290)
T PRK09635 192 LDTLLEVLDPG 202 (290)
T ss_pred HHHHHHHhhhh
Confidence 99999999753
No 63
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=41.28 E-value=13 Score=16.02 Aligned_cols=6 Identities=0% Similarity=-0.435 Sum_probs=4.2
Q ss_pred cCCCCC
Q 021052 307 TPPPIQ 312 (318)
Q Consensus 307 tGaG~G 312 (318)
.|+|||
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 367887
No 64
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=40.64 E-value=78 Score=29.48 Aligned_cols=58 Identities=21% Similarity=0.109 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHH----------H--HHHHHHHHHhcCCCchHH
Q 021052 189 EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEA----------K--RVHAFKDTVSSNLSEEDK 256 (318)
Q Consensus 189 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~----------~--Rv~~~~~al~~~d~~~~~ 256 (318)
.+++.+|+.+++|.+.... .....|++-.+.+. . -+..+.+++.+||
T Consensus 130 ~g~s~~EIA~~lg~s~~tV----------------k~~l~RAr~~Lr~~~~~~~~~~~~~~~~v~~f~~A~~~gD----- 188 (293)
T PRK09636 130 FGVPFDEIASTLGRSPAAC----------------RQLASRARKHVRAARPRFPVSDEEGAELVEAFFAALASGD----- 188 (293)
T ss_pred hCCCHHHHHHHHCCCHHHH----------------HHHHHHHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhCC-----
Confidence 4677889999998654432 12233343333331 1 2678999999999
Q ss_pred HHHHHHHHHHH
Q 021052 257 LKKLGDLMNDS 267 (318)
Q Consensus 257 ~~~lG~Lm~~s 267 (318)
++.|..|+.+.
T Consensus 189 ~~~l~~Lla~D 199 (293)
T PRK09636 189 LDALVALLAPD 199 (293)
T ss_pred HHHHHHHHhhC
Confidence 99999999863
No 65
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=31.72 E-value=4.5e+02 Score=24.82 Aligned_cols=95 Identities=13% Similarity=0.098 Sum_probs=49.7
Q ss_pred hhHHHHHhhh-cCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHhcCC----
Q 021052 178 PVFAVKEFLR-KEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVH-AFKDTVSSNL---- 251 (318)
Q Consensus 178 ~~~~~~~~~~-~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~-~~~~al~~~d---- 251 (318)
|.+.+++.|. +.-.+..++...+... +......+ .+..+.+.++.++.... ++...+....
T Consensus 3 W~~k~~~~l~~~~k~~L~~l~~Ll~e~-----e~~~~~~~--------~l~~~L~~~v~~a~~~~~~a~~~l~~k~~~r~ 69 (335)
T PF08429_consen 3 WAEKVKEALEESPKPSLKELRSLLSEG-----EKIPFPLP--------ELLENLRNFVKRAESWVEKAQQLLSRKQRTRR 69 (335)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHH-----HhCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 4555566653 3344456665555321 11122222 34466666666665533 3444443210
Q ss_pred ----------CchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHH
Q 021052 252 ----------SEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIAR 297 (318)
Q Consensus 252 ----------~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~ 297 (318)
.+.-.++.+..|+.+.. .+.|.||| + +.|.+.+.
T Consensus 70 ~~~~~~~~~~~~~~~l~~l~~Ll~e~~-----~L~~~~pE---i----~~L~~l~~ 113 (335)
T PF08429_consen 70 RNGKAEDQKSRNKLTLEELEALLEEIE-----SLPFDCPE---I----DQLKELLE 113 (335)
T ss_pred cCCccccccccccCCHHHHHHHHHHHh-----cCCeeCch---H----HHHHHHHH
Confidence 11135788888887665 25888999 7 66665554
No 66
>PF01355 HIPIP: High potential iron-sulfur protein; InterPro: IPR000170 High potential iron-sulphur proteins (HiPIP) [, ] are a specific class of high-redox potential 4Fe-4S ferredoxins that functions in anaerobic electron transport and which occurs commonly in purple photosynthetic bacteria and in other bacteria, such as Paracoccus denitrificans and Thiobacillus ferrooxidans []. HiPIPs seem to react by oxidation of [4Fe-4S]2+ to [4Fe-4S]3+ The HiPIPs are small proteins which show significant variation in their sequences, their sizes (from 63 to 85 amino acids), and in their oxidation- reduction potentials. As shown in the following schematic representation the iron-sulphur cluster is bound by four conserved cysteine residues. [4Fe-4S cluster] | | | | xxxxxxxxxxxxxxxxxxxCxCxxxxxxxCxxxxxCxxxx 'C': conserved cysteine involved in the binding of the iron-sulphur cluster. ; GO: 0009055 electron carrier activity, 0019646 aerobic electron transport chain; PDB: 1ISU_B 1B0Y_A 1CKU_B 1JS2_D 1HRR_A 1NOE_A 1HRQ_A 1NEH_A 1HIP_A 3A38_A ....
Probab=28.42 E-value=19 Score=26.20 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=10.5
Q ss_pred cCCCCCceeecC
Q 021052 307 TPPPIQSKTKFP 318 (318)
Q Consensus 307 tGaG~GG~v~~~ 318 (318)
.|.+||||.+||
T Consensus 39 ~~~~~G~C~lF~ 50 (64)
T PF01355_consen 39 SGDAWGGCPLFP 50 (64)
T ss_dssp ECTSEEEETTST
T ss_pred CCCCccCCcccC
Confidence 678899999997
No 67
>PRK12333 nucleoside triphosphate pyrophosphohydrolase; Reviewed
Probab=24.43 E-value=1.5e+02 Score=26.79 Aligned_cols=65 Identities=15% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHH--HhHhhhhhccCCCccchhhhccHHHHHHHHHh--CCCCcc
Q 021052 231 AHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMND--SHHSCSVLYECSITSSARVHEILISMVTIARK--PGHTPP 304 (318)
Q Consensus 231 ~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~--sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~--~Ga~Ga 304 (318)
.|.+.|+ +|.++|+..+| .+..-++||.++.+ -|..+-.. -..=. +..+++.+++...+ +.++|.
T Consensus 30 ~yllEE~---yEv~dAI~~~d-~~~l~EELGDlLlqVvfha~iaee--~g~F~---~~DV~~~i~~KlirRHPHVFg~ 98 (204)
T PRK12333 30 PYLLEEA---AEAVDALSEGD-PQELAEELGDVLLQVAFHSVIAEE--EGRFT---YPDVERGIVEKLIRRHPHVFGD 98 (204)
T ss_pred HHHHHHH---HHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHH--cCCCC---HHHHHHHHHHHhcccCCccCCC
Confidence 4777774 78889999987 34455789998776 34333332 11223 43334555555543 567764
No 68
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=20.44 E-value=1.3e+02 Score=31.54 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=59.2
Q ss_pred HHHHHhhhcCCCCHHHHHHHhhhh-----hhhhhhccCChhhHHHHHhHHHHHHHHHHHHH---------HHHHHHHHHH
Q 021052 180 FAVKEFLRKEPYTALDIEKITEEK-----LTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS---------EAKRVHAFKD 245 (318)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~---------E~~Rv~~~~~ 245 (318)
+.|.+++-.++++.+++...+-.. +..|.+.+...+|+++....|...+|+.|++. |.+-+...+.
T Consensus 321 ~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~ 400 (607)
T KOG0051|consen 321 NFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVV 400 (607)
T ss_pred HHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHH
Confidence 566777777777776665554321 23566777788888888888888889888876 2221222211
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhHhhhhh
Q 021052 246 TVSSNLSEEDKLKKLGDLMNDSHHSCSVL 274 (318)
Q Consensus 246 al~~~d~~~~~~~~lG~Lm~~sh~slr~~ 274 (318)
...++ |..+|++|..+=..||+.
T Consensus 401 -~~g~~-----W~~Ig~~lgr~P~~crd~ 423 (607)
T KOG0051|consen 401 -EHGND-----WKEIGKALGRMPMDCRDR 423 (607)
T ss_pred -Hhccc-----HHHHHHHHccCcHHHHHH
Confidence 12245 999999999877778774
Done!