Query 021052
Match_columns 318
No_of_seqs 188 out of 1354
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 12:03:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/021052.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/021052hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2u_C Protein GAL3; rossmann 100.0 1.9E-59 6.4E-64 469.1 18.8 296 11-317 144-468 (520)
2 2a2c_A N-acetylgalactosamine k 100.0 3.1E-51 1.1E-55 407.6 24.9 281 12-317 147-430 (478)
3 1pie_A Galactokinase; galactos 100.0 4.9E-42 1.7E-46 335.7 24.4 234 13-317 140-376 (419)
4 1wuu_A Galactokinase; galactos 100.0 1.1E-41 3.6E-46 331.2 20.0 231 11-317 128-361 (399)
5 2cz9_A Probable galactokinase; 100.0 1.1E-39 3.6E-44 310.3 22.2 226 11-316 84-310 (350)
6 3k85_A D-glycero-D-manno-hepto 100.0 2.9E-37 1E-41 296.5 9.7 202 12-317 96-305 (357)
7 3gon_A Phosphomevalonate kinas 100.0 6.9E-33 2.4E-37 260.8 15.0 192 10-316 82-300 (335)
8 1kvk_A MK, mevalonate kinase; 100.0 3.8E-32 1.3E-36 263.5 18.1 200 12-317 126-342 (395)
9 3k17_A LIN0012 protein; protei 100.0 4.6E-31 1.6E-35 254.1 20.2 196 10-317 94-324 (365)
10 2pg9_A Phosphomevalonate kinas 100.0 9.3E-31 3.2E-35 249.3 16.2 193 10-316 84-302 (337)
11 2x7i_A Mevalonate kinase; tran 100.0 3.4E-30 1.2E-34 241.0 15.6 194 11-316 83-277 (308)
12 4hac_A Mevalonate kinase; GHMP 100.0 5E-29 1.7E-33 235.8 19.6 193 11-317 94-287 (321)
13 2hfs_A Mevalonate kinase, puta 100.0 8.6E-29 3E-33 233.8 20.3 196 13-317 96-294 (332)
14 2oi2_A Mevalonate kinase; enzy 100.0 6.6E-29 2.3E-33 230.0 18.8 191 12-316 72-263 (292)
15 1kkh_A Mevalonate kinase; mixe 99.9 2.8E-27 9.5E-32 222.1 15.6 185 12-316 97-288 (317)
16 1h72_C HK, homoserine kinase; 99.9 7.4E-26 2.5E-30 210.2 14.6 187 13-317 75-265 (296)
17 3hul_A HSK, HK, homoserine kin 99.8 5.8E-20 2E-24 172.1 12.7 183 11-317 68-255 (298)
18 2gs8_A Mevalonate pyrophosphat 99.8 9.4E-19 3.2E-23 164.4 16.5 193 13-317 91-288 (317)
19 3pyf_A 4-diphosphocytidyl-2-C- 99.8 1.3E-18 4.5E-23 163.5 11.2 91 13-115 87-177 (306)
20 2v8p_A 4-diphosphocytidyl-2-C- 99.7 1.2E-17 4E-22 153.8 8.3 91 13-115 80-170 (271)
21 3qt5_A Mevalonate diphosphate 99.7 9.5E-16 3.2E-20 145.5 17.5 92 13-115 93-190 (332)
22 1fi4_A Mevalonate 5-diphosphat 99.6 3.5E-15 1.2E-19 145.7 17.7 53 12-64 121-173 (416)
23 1uek_A 4-(cytidine 5'-diphosph 99.6 1.3E-16 4.3E-21 147.0 4.3 87 13-115 75-161 (275)
24 3lto_A Mevalonate diphosphate 99.5 9.9E-14 3.4E-18 131.1 15.7 53 12-64 90-147 (323)
25 2ww4_A 4-diphosphocytidyl-2C-m 99.5 2.6E-15 9E-20 139.3 3.8 91 12-115 87-177 (283)
26 2hke_A Diphosphomevalonate dec 99.4 6E-12 2.1E-16 121.3 17.1 60 12-83 95-154 (380)
27 3f0n_A Mevalonate pyrophosphat 99.3 1.5E-11 5.2E-16 119.2 15.3 87 13-113 122-216 (414)
28 3k4g_A DNA-directed RNA polyme 22.1 38 0.0013 25.1 1.7 53 243-307 23-76 (86)
29 1hpi_A High potential iron sul 20.8 20 0.0007 25.6 -0.0 12 307-318 44-55 (71)
No 1
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=1.9e-59 Score=469.12 Aligned_cols=296 Identities=28% Similarity=0.376 Sum_probs=258.7
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAF---GVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFA 87 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~---g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~ 87 (318)
++.||++.|.|+||+|+|| |||++||++.|++.++ +.++++.+++++|+.+|+++|.|||+|||+++++|++|++
T Consensus 144 ~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~ 221 (520)
T 3v2u_C 144 PLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISKKDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHA 221 (520)
T ss_dssp CCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBHHHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBE
T ss_pred CCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeE
Confidence 6789999999999999999 9999999999999998 7789999999999999999999999999999999999999
Q ss_pred EEEeeCC-CeEEEeecCC----CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCch----hhhhcccc
Q 021052 88 ELIDFNP-IRTTDVQLPA----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQ----EAISKVKT 158 (318)
Q Consensus 88 ~~id~~~-~~~~~~~~~~----~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~----~~~~~~~~ 158 (318)
+++||++ ++++++++|+ ++.|+|+||++.++||.+++++||.||.||+.|+++|+++++++.. .......+
T Consensus 222 l~id~~~~l~~~~v~~p~~~~~~~~~vI~ns~v~~~k~~la~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~s 301 (520)
T 3v2u_C 222 LYVEFRPKLKATPFKFPQLKNHEISFVIANTLVKSNKFETAPTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGN 301 (520)
T ss_dssp EEEECSSSCEEEEECCCCCSSCEEEEEEEECCCCCCHHHHTTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCC
T ss_pred EEEEcCCCceeEEeeCCCccCCCeEEEEEECCCcccccccccchhhHHHHHHHHHHHHHHHhhCCccccccccccccccc
Confidence 9999999 9999999987 8999999999999999999999999999999999999999876421 01112348
Q ss_pred chhhhhhhhhh----hccC---------CCCChhHHHHHhhhc--CCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhH
Q 021052 159 LSDVEGLCVAF----ACKN---------GSSDPVFAVKEFLRK--EPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (318)
Q Consensus 159 Lrd~~~~~~~~----~~~~---------~~~~~~~~~~~~~~~--~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 223 (318)
|||+.++++.- ...| ++.+|.+.+++.+++ ++||.+++++.+|.+.++|.++|++.+|+ ..+.
T Consensus 302 LRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~--~~~~ 379 (520)
T 3v2u_C 302 LRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEESFSRKKSGFTVHEASTALNCSREEFTRDYLTTFPV--RFQV 379 (520)
T ss_dssp HHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHHHTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCE--EESC
T ss_pred HHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHHhhhccccccHHHHHHhhcCChhhhhhhhcccccc--cccc
Confidence 99997754320 0111 234566777888865 49999999999998778888889988885 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCC
Q 021052 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNL--SEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGH 301 (318)
Q Consensus 224 ~~~~~R~~hvi~E~~Rv~~~~~al~~~d--~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga 301 (318)
|.+++|++||++|+.||.+++++|++++ +++++++.||+||++||.|||++|+||||| | |.|+++|++.|+
T Consensus 380 ~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~pe---l----d~lv~~a~~~Ga 452 (520)
T 3v2u_C 380 LKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIE---T----NQICSIALANGS 452 (520)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHH---H----HHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHH---H----HHHHHHHHhCCC
Confidence 7799999999999999999999999974 123459999999999999999999999999 9 999999999999
Q ss_pred CcccccCCCCCceeec
Q 021052 302 TPPPTTPPPIQSKTKF 317 (318)
Q Consensus 302 ~GakltGaG~GG~v~~ 317 (318)
+||||||||||||+|.
T Consensus 453 ~GarlTGaG~GGc~ia 468 (520)
T 3v2u_C 453 FGSRLTGAGWGGCTIH 468 (520)
T ss_dssp SEEEECSSCSSSEEEE
T ss_pred CEEEEecCCCCceEEE
Confidence 9999999999999973
No 2
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=3.1e-51 Score=407.62 Aligned_cols=281 Identities=37% Similarity=0.541 Sum_probs=253.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.+|++|.+.|+||+++|||||||++||++.|++.+++.++++++++++|+.+|++.|.++|+|||+++++|++|++++++
T Consensus 147 ~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~g~~~g~~D~~a~~~G~~g~~~~i~ 226 (478)
T 2a2c_A 147 LTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYIGTEGGGMDQSISFLAEEGTAKLIE 226 (478)
T ss_dssp CCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGTCCCCSHHHHHHHHCBTTBEEEEE
T ss_pred CCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhcCCCCccHHHHHHHhccCCcEEEEE
Confidence 57999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhhc
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFAC 171 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~ 171 (318)
|++....++++|+++.|++++|+++.++. ...+||.|+.||+.|+++|+++++++ |.++++|+|+++.+
T Consensus 227 f~~~~~~~~~~~~~~~~vi~~s~~~~~t~--~t~~yn~r~~e~~~A~~~L~~~~~~~----~~~~~~l~d~~~~~----- 295 (478)
T 2a2c_A 227 FSPLRATDVKLPSGAVFVIANSCVEMNKA--ATSHFNIRVMECRLAAKLLAKYKSLQ----WDKVLRLEEVQAKL----- 295 (478)
T ss_dssp TTTTEEEEECCCTTEEEEEEECCCCCCGG--GSSHHHHHHHHHHHHHHHHHHHTTCC----TTTCCCHHHHHHHH-----
T ss_pred cCCCceEEecCCCCcEEEEEeCCCccccc--ccchhHHHHHHHHHHHHHHHhhhccc----ccccchHHhhhhhh-----
Confidence 99999999999989999999999953322 33689999999999999999987764 45677899986542
Q ss_pred cCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc--
Q 021052 172 KNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS-- 249 (318)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~-- 249 (318)
+.++.+|++.+++.+.++.|+.+++.+.+|.+.+++.+.|++.+++ ..+.+.+++|+.|+++|+.|+.+++++|++
T Consensus 296 ~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~--~~~~~~~~~ra~h~~~e~~rv~~~~~aL~~~~ 373 (478)
T 2a2c_A 296 GISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQ--DVLIFKLYQRAKHVYSEAARVLQFKKICEEAP 373 (478)
T ss_dssp TCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGT--TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3456678899999998888999999999998888888888877653 345567899999999999999999999998
Q ss_pred -CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 250 -NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 250 -~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+| ++.||+||++||++||++|+||||+ + |+|+++|++.|++|+||||||||||++.
T Consensus 374 ~~d-----~~~lg~lm~~sh~slr~l~~vs~pe---l----d~l~~~a~~~Ga~GarltGAG~GG~via 430 (478)
T 2a2c_A 374 ENM-----VQLLGELMNQSHMSCRDMYECSCPE---L----DQLVDICRKFGAQGSRLTGAGWGGCTVS 430 (478)
T ss_dssp TTH-----HHHHHHHHHHHHHHHHHTSCCCCHH---H----HHHHHHHHHTTCSEEEECTTCSSSEEEE
T ss_pred ccH-----HHHHHHHHHHHHHHHHhcccCCCHH---H----HHHHHHHHhCCCcEEEeccCCCccEEEE
Confidence 87 9999999999999999999999999 9 9999999999999999999999999974
No 3
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=4.9e-42 Score=335.70 Aligned_cols=234 Identities=24% Similarity=0.268 Sum_probs=206.0
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
+|++|.+.|+||+++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.|+|+|||+++++|+.+.++++|
T Consensus 140 ~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~~d 219 (419)
T 1pie_A 140 KGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDYIGVNSGILDQFAIGFGEVKKAIELD 219 (419)
T ss_dssp SCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCBTTEEEEEE
T ss_pred CCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhccCCeEEEee
Confidence 79999999999999999999999999999999999999999999999999997 99999999999999999988999999
Q ss_pred eCCCeEEEeecC-CCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 92 FNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 92 ~~~~~~~~~~~~-~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
+++..++++++| +++.+++++|++ ++.|..+.||.|+.||+.|.++|+++.+ +..++++.+.
T Consensus 220 ~~~~~~~~l~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~~~~---------v~~l~~~~~~----- 282 (419)
T 1pie_A 220 CNTLKYEMVPVELRDYDIVIMNTNK---PRALTESKYNERFAETREALKRMQTRLD---------IQSLGELSNE----- 282 (419)
T ss_dssp TTTCCEEEEECCCTTEEEEEEECCC---CCCTTCHHHHHHHHHHHHHHHHHHHHCC---------CSSGGGCCHH-----
T ss_pred cCCCceEEeecCCCCcEEEEEECCC---ccccccchHHHHHHHHHHHHHHHhhccc---------cCchhhCCHH-----
Confidence 998889999987 689999999999 5788888999999999999999987532 3455554321
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
+++++... ++ ....++|+.|++.|+.|+.++.++|+++
T Consensus 283 ------------------------~~~~~~~~-l~-----------------~~~~~~~~~~~v~e~~r~~~~~~al~~~ 320 (419)
T 1pie_A 283 ------------------------EFDANTDL-IG-----------------DETLIKRARHAVYENNRTKIAQKAFVAG 320 (419)
T ss_dssp ------------------------HHHHTGGG-TC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------HHHHHHhh-cC-----------------cHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 22221110 10 1146889999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhC-CCCcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKP-GHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~-Ga~GakltGaG~GG~v~~ 317 (318)
| ++.||++|+++|.++++.|++++|+ + |.|++++++. |++|+||||||||||++.
T Consensus 321 d-----~~~lg~lm~~~~~~l~~~~~~~~p~---l----~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~a 376 (419)
T 1pie_A 321 N-----LTKFGELLNASHASLKDDYEVTGLE---L----DTLAETAQKQAGVLGARMTGAGFGGCAIA 376 (419)
T ss_dssp C-----HHHHHHHHHHHHHHHHHTSCCCCHH---H----HHHHHHHHHSTTEEEEEECSSCSSSEEEE
T ss_pred C-----HHHHHHHHHHHHHHHHHhhCCCCHH---H----HHHHHHHHhcCCCceeeEecCCCCeEEEE
Confidence 9 9999999999999999999999999 9 9999999997 999999999999999873
No 4
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.1e-41 Score=331.19 Aligned_cols=231 Identities=26% Similarity=0.285 Sum_probs=200.9
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
+++|++|.+.|+||+++|||||||++||++.|+++++|.++++++++++|+.+|+ ++|.|||+|||+++++|+.+++++
T Consensus 128 ~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~E~~~~G~~~G~~D~~~~~~Gg~~~~~~ 207 (399)
T 1wuu_A 128 PLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALL 207 (399)
T ss_dssp CCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHHHHTCCCCCSHHHHHHHHCCTTEEEE
T ss_pred CCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHhccCCeEEE
Confidence 3579999999999999999999999999999999999999999999999999998 999999999999999999888999
Q ss_pred EeeCCCeEEEeecC-CCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLP-AGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVA 168 (318)
Q Consensus 90 id~~~~~~~~~~~~-~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~ 168 (318)
+|+++..++++++| +++.+++++|++ +++|....||.|+.||+.|.++|+.+ .+|++.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~vl~~~~~---~~~t~~~~y~~r~~~~~~a~~~l~~~-------------~l~~~~~~--- 268 (399)
T 1wuu_A 208 IDCRSLETSLVPLSDPKLAVLITNSNV---RHSLASSEYPVRRRQCEEVARALGKE-------------SLREVQLE--- 268 (399)
T ss_dssp EETTTCCEEEEECCCSSEEEEEEEEEE---EC--CTTTHHHHHHHHHHHHHHTTCS-------------STTSCCHH---
T ss_pred EecCCCceEEecCCCCCeEEEEEECCC---ccccccccHHHHHHHHHHHHHHhChh-------------hhhcCCHH---
Confidence 99988888999987 489999999998 68888889999999999988887642 34443221
Q ss_pred hhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 021052 169 FACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVS 248 (318)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~ 248 (318)
++.+.+. .+++ ..++|+.|++.|+.|+.++.++|+
T Consensus 269 --------------------------~~~~~~~-~l~~------------------~~~~r~~~~~~e~~r~~~~~~al~ 303 (399)
T 1wuu_A 269 --------------------------ELEAARD-LVSK------------------EGFRRARHVVGEIRRTAQAAAALR 303 (399)
T ss_dssp --------------------------HHTTGGG-GSCH------------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHHh-hcCH------------------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1111110 0111 458899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHh-CCCCcccccCCCCCceeec
Q 021052 249 SNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARK-PGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 249 ~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~-~Ga~GakltGaG~GG~v~~ 317 (318)
++| ++.||++|+++|+++++.|++++|+ + |.+++.+++ .|++|+||||||||||++.
T Consensus 304 ~~d-----~~~lg~~m~~~h~~l~~~~~~~~p~---l----~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~ 361 (399)
T 1wuu_A 304 RGD-----YRAFGRLMVESHRSLRDDYEVSCPE---L----DQLVEAALAVPGVYGSRMTGGGFGGCTVT 361 (399)
T ss_dssp TTC-----HHHHHHHHHHHHHHHHHTSCCCCHH---H----HHHHHHHHTSTTEEEEEECSSCSEEEEEE
T ss_pred cCC-----HHHHHHHHHHHHHHHHHHhcCCCHH---H----HHHHHHHHhcCCceEEeeecCCCccEEEE
Confidence 999 9999999999999999999999999 9 999999999 7999999999999999863
No 5
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=1.1e-39 Score=310.26 Aligned_cols=226 Identities=19% Similarity=0.219 Sum_probs=197.2
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
+.+|++|.+.++||.++|||||||++||++.|++++++.++++++++++|..+|. ++|.|+|++|++++++|+.+++++
T Consensus 84 ~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~~~gi~d~~~~~~g~~~~~~~ 163 (350)
T 2cz9_A 84 EVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGVPCGILDQFAVVFGREGNVIF 163 (350)
T ss_dssp CCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCCCCSHHHHHHHHCCTTEEEE
T ss_pred CCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCccchhHHHHHhcCCCeEEE
Confidence 3479999999999999999999999999999999999999999999999999997 999999999999999998889999
Q ss_pred EeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
+|+++..++++++|+++++++++|++ ++.+....|+.|+.+|+.|+++++. ..||++.++
T Consensus 164 ~d~~~~~~~~l~~~~~~~~vl~~~~~---~~~~~t~~~~~r~~~~~~a~~~~~~-------------~~lr~~~~~---- 223 (350)
T 2cz9_A 164 LDTHTLDYEYIPFPKDVSILVFYTGV---RRELASSEYAERKHIAEESLKILGK-------------GSSKEVREG---- 223 (350)
T ss_dssp EETTTCCEEEEECCTTEEEEEEECSC---C----CHHHHHHHHHHHHHHHHHTC-------------SCGGGCCGG----
T ss_pred EecCCCcEEEEcCCCCcEEEEEECCC---CCccccchHHHHHHHHHHHHHHhCh-------------hhhhhCCHH----
Confidence 99988889999998899999999998 4555455699999999999887763 255654321
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
++ . .+++ .+++|..|++.|+.|+.++.++|++
T Consensus 224 -------------------------~~----~-~l~~------------------~~~~~~~~~~~~~~~~~~~~~al~~ 255 (350)
T 2cz9_A 224 -------------------------EL----S-KLPP------------------LHRKFFGYIVRENARVLEVRDALKE 255 (350)
T ss_dssp -------------------------GG----G-GSCH------------------HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------HH----h-hCCH------------------HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 00 0 0111 3467889999999999999999999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
+| ++.||++|+++|.++++.|++++|+ + |.+++.+++.|++|+||||+|||||++
T Consensus 256 ~d-----~~~lg~~~~~~~~~l~~~~~~~~p~---l----~~l~~~~~~~Ga~ga~lsGaG~G~~v~ 310 (350)
T 2cz9_A 256 GN-----VEEVGKILTTAHWDLAKNYEVSCKE---L----DFFVERALKLGAYGARLTGAGFGGSAI 310 (350)
T ss_dssp TC-----HHHHHHHHHHHHHHHHHTTCCCCHH---H----HHHHHHHHHTTCSEEEECSSCSSSEEE
T ss_pred CC-----HHHHHHHHHHHHHHHHHHhcCCCHH---H----HHHHHHHHHcCCCEEEEecCCCceEEE
Confidence 99 9999999999999999989999999 9 999999999999999999999999986
No 6
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-37 Score=296.46 Aligned_cols=202 Identities=13% Similarity=0.124 Sum_probs=150.4
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i 90 (318)
.+||+|.+.++||.++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.|||.|||+++++|+...+.+.
T Consensus 96 ~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G~~~G~~D~~a~~~Gg~~~~~~~ 175 (357)
T 3k85_A 96 PKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLGLSGGKQDQYAAAFGGFNYMEFL 175 (357)
T ss_dssp CCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHCSEEEEEEE
T ss_pred CCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHccCCCcHHHHHHHHhCCceEEEEe
Confidence 579999999999999999999999999999999999999999999999999998 9999999999999999976655565
Q ss_pred eeCCCeEEEeecCCC------cEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 021052 91 DFNPIRTTDVQLPAG------GTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (318)
Q Consensus 91 d~~~~~~~~~~~~~~------~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~ 164 (318)
++++..++++++|+. +.+++++|+.+ +.+ .+++++.. ..+.+
T Consensus 176 ~~~~~~~~~l~~~~~~~~~l~~~lvi~~t~~~---~~a---------------~~~l~~~~-----------~~~~~--- 223 (357)
T 3k85_A 176 QNDLVIVNPLKMKRWIVDELESSMVLYFTGRS---RSS---------------AAIINEQK-----------KNTSE--- 223 (357)
T ss_dssp TTTEEEEEEECCCHHHHHHHHHTEEEECC---------------------------------------------------
T ss_pred CCCceeEEEEecChhhhhhcCceEEEEECCCc---ccH---------------HHHHHHHH-----------HHhhc---
Confidence 666667888888753 68999999873 333 13333320 00000
Q ss_pred hhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021052 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~ 244 (318)
.+ ..++|+.|.+.| |+.+++
T Consensus 224 ---------------------------------------~~-------------------~~~~~~~~~i~~--~~~~~~ 243 (357)
T 3k85_A 224 ---------------------------------------GN-------------------QTAIEAMHKIKQ--SAIDTK 243 (357)
T ss_dssp ------------------------------------------------------------CCTTHHHHHHHH--HHHHHH
T ss_pred ---------------------------------------Cc-------------------HHHHHHHHHHHH--HHHHHH
Confidence 00 013456788876 788999
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhHhhhhh-ccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 245 ~al~~~d~~~~~~~~lG~Lm~~sh~slr~~-~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
++|+++| ++.||++|+++|++++++ |+||||+ + |.|+++|++.|++|+||||||+|||+++
T Consensus 244 ~aL~~~d-----~~~lg~lm~~~~~~l~~~~~~vs~p~---l----d~l~~~a~~~Ga~GaklsGaG~gG~via 305 (357)
T 3k85_A 244 LALLKGD-----VGEFARILGEGWENKKKMAGAITNPM---I----QEAFDVATGAGAMAGKVSGAGGGGFIMF 305 (357)
T ss_dssp HHHTTTC-----HHHHHHHHHHHHHHTTC------------------CCSCTTTTSCCSEEEECCCC---CEEE
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHhcCCCCCCHH---H----HHHHHHHHhcCCeEeEecccCCCCEEEE
Confidence 9999999 999999999999999997 9999999 9 9999999999999999999999999874
No 7
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=6.9e-33 Score=260.76 Aligned_cols=192 Identities=13% Similarity=0.023 Sum_probs=154.8
Q ss_pred ccCccEEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCC
Q 021052 10 TKFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSG 85 (318)
Q Consensus 10 ~~~~G~~i~i~s~IP~g---~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g 85 (318)
.+++|+++.|.|++|.+ +|||||||++||++.|++++++.++++++++++|+.+|+ ++|.++| |||+++++|+
T Consensus 82 ~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~~~~g~~sg-~D~a~a~~Gg-- 158 (335)
T 3gon_A 82 QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSM-GDLACIAAED-- 158 (335)
T ss_dssp CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCS-HHHHHHHHTS--
T ss_pred CCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHhcCCCCC-CCcceeecCC--
Confidence 46789999999999987 599999999999999999999999999999999999998 8889888 9999999985
Q ss_pred eEEEEeeC----------------------CCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHH
Q 021052 86 FAELIDFN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAI 143 (318)
Q Consensus 86 ~~~~id~~----------------------~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~ 143 (318)
++++.+. ....++++.+.++.+++++++.+ +.|. +.+.+
T Consensus 159 -~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~t~---------------~~v~~ 219 (335)
T 3gon_A 159 -LVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKEV---AVSS---------------HMVQQ 219 (335)
T ss_dssp -CEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCCC---CCHH---------------HHHHH
T ss_pred -eEEEEeCCccccceeecccchhheecccccceeEEcCCccccceEEeecCCh---hhHH---------------HHHHH
Confidence 3444321 13456677777899999999983 4431 11111
Q ss_pred HhCCCchhhhhccccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhH
Q 021052 144 KLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQ 223 (318)
Q Consensus 144 ~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 223 (318)
.. ..+ .+
T Consensus 220 v~------------~~~--------------------------------------------~~----------------- 226 (335)
T 3gon_A 220 IK------------QNI--------------------------------------------NQ----------------- 226 (335)
T ss_dssp HG------------GGC--------------------------------------------CH-----------------
T ss_pred HH------------HHh--------------------------------------------HH-----------------
Confidence 10 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhh-ccCCCccchhhhccHHHHHHHHHhCCCC
Q 021052 224 YKLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVL-YECSITSSARVHEILISMVTIARKPGHT 302 (318)
Q Consensus 224 ~~~~~R~~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~-~~vS~pe~~~l~~~~d~lv~~a~~~Ga~ 302 (318)
.++.....++.++.++|+++| ++.||+||+++|.+|++. +++|+|+ + |.|+++|++.|+
T Consensus 227 -------~~~~~~~~~~~~~~~aL~~~d-----~~~lg~lm~~~h~~l~~l~~~is~p~---l----d~l~~~a~~~g~- 286 (335)
T 3gon_A 227 -------NFLTSSKETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPL---L----RQLKEASQDLQA- 286 (335)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHH---H----HHHHHTTTTSSE-
T ss_pred -------HHHHHHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHHHhCCCcCCCHH---H----HHHHHHHHhCCc-
Confidence 112223456888999999999 999999999999999994 5999999 9 999999999996
Q ss_pred cccccCCCCCceee
Q 021052 303 PPPTTPPPIQSKTK 316 (318)
Q Consensus 303 GakltGaG~GG~v~ 316 (318)
||||||||||||++
T Consensus 287 ~akltGAG~Ggc~i 300 (335)
T 3gon_A 287 VAKSSGAGGGDCGI 300 (335)
T ss_dssp EEEECTTCSSSEEE
T ss_pred EEEEccccchheEE
Confidence 89999999999987
No 8
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=99.98 E-value=3.8e-32 Score=263.46 Aligned_cols=200 Identities=17% Similarity=0.123 Sum_probs=161.3
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCC-----CCC-------H---HHHHHHHHHHHH-HhCCCCCccc
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGV-----EVP-------K---KEIAQLTCECEQ-FIGTQSGGMD 75 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~-----~ls-------~---~ela~la~~~E~-~~G~~~G~~D 75 (318)
.+|++|.+.++||.++|||||||++||++.|++++++. +++ + .+++++|+.+|+ ++|.|+|+ |
T Consensus 126 ~~g~~i~i~s~iP~g~GLGSSaA~~va~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D 204 (395)
T 1kvk_A 126 LPSLDIMVWSELPPGAGLGSSAAYSVCVAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-D 204 (395)
T ss_dssp CCCEEEEEEESSCTTSSSCHHHHHHHHHHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-H
T ss_pred CCCEEEEEEecCCCCCCccHHHHHHHHHHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-c
Confidence 57999999999999999999999999999999999998 788 7 456666888998 99999997 9
Q ss_pred ceeeeeccCCeEEEEeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhc
Q 021052 76 QAISIMAKSGFAELIDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISK 155 (318)
Q Consensus 76 ~~~~~~G~~g~~~~id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~ 155 (318)
|+++++|+ ++++ ++..+++++.++++++++++|++ +++|.. + +..
T Consensus 205 ~~~~~~Gg---~~~~--~~~~~~~l~~~~~~~~vl~~~~~---~~~T~~---------~------~~~------------ 249 (395)
T 1kvk_A 205 NSVSTWGG---ALRY--QQGKMSSLKRLPALQILLTNTKV---PRSTKA---------L------VAG------------ 249 (395)
T ss_dssp HHHHHHCS---EEEE--SSSCEEECSCCCCEEEEEEECCC---CCCHHH---------H------HHH------------
T ss_pred hHHhhhcc---eEEE--cCCCceeccCCCCcEEEEEECCC---CCchHH---------H------HHH------------
Confidence 99999973 5554 44577888777789999999998 455521 1 111
Q ss_pred cccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHH
Q 021052 156 VKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYS 235 (318)
Q Consensus 156 ~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~ 235 (318)
+|+... . .++.+ ...++|+.|++.
T Consensus 250 ---~~~~~~------------------------------~--------~~~~~---------------~~~~~~~~~~~~ 273 (395)
T 1kvk_A 250 ---VRSRLI------------------------------K--------FPEIM---------------APLLTSIDAISL 273 (395)
T ss_dssp ---HHHHHH------------------------------H--------SHHHH---------------HHHHHHHHHHHH
T ss_pred ---HHHHHH------------------------------H--------CHHHH---------------HHHHHHHHHHHH
Confidence 111000 0 00000 035788899999
Q ss_pred HHHHHHHH-HHHHhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCce
Q 021052 236 EAKRVHAF-KDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSK 314 (318)
Q Consensus 236 E~~Rv~~~-~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~ 314 (318)
|+.|+.++ ..+|+++| ++.||++|+++|.+|++ |++++|+ + |.+++.+++.|+ |+||||||||||
T Consensus 274 ~~~~~l~~~~~al~~~d-----~~~lg~lm~~~~~~l~~-~~~~~p~---l----~~l~~~a~~~Ga-ga~~sGaG~Gg~ 339 (395)
T 1kvk_A 274 ECERVLGEMAAAPVPEQ-----YLVLEELMDMNQHHLNA-LGVGHAS---L----DQLCQVTAAHGL-HSKLTGAGGGGC 339 (395)
T ss_dssp HHHHHHHHHTTCCCHHH-----HHHHHHHHHHHHHHHHH-HTCCCHH---H----HHHHHHHHHTTC-EEEECSSCSSSE
T ss_pred HHHHHHHhhhccccHHH-----HHHHHHHHHHHHHHHHH-cCCCCHH---H----HHHHHHHHHcCC-ceeeccCCCCCE
Confidence 99988776 67788788 99999999999999997 8999999 9 999999999999 999999999999
Q ss_pred eec
Q 021052 315 TKF 317 (318)
Q Consensus 315 v~~ 317 (318)
++.
T Consensus 340 v~~ 342 (395)
T 1kvk_A 340 GIT 342 (395)
T ss_dssp EEE
T ss_pred EEE
Confidence 874
No 9
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=99.97 E-value=4.6e-31 Score=254.12 Aligned_cols=196 Identities=12% Similarity=0.048 Sum_probs=158.5
Q ss_pred ccCccEEEEEEeCCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccC
Q 021052 10 TKFQLFNHINSLFFNL----GSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKS 84 (318)
Q Consensus 10 ~~~~G~~i~i~s~IP~----g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~ 84 (318)
.+.+||+|.+.|+||. ++|||||||++||++.|++++++.++++++++++|+.+|+ ++|.+ |++|++++++|+
T Consensus 94 ~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~g~~-~g~D~~~~~~Gg- 171 (365)
T 3k17_A 94 IELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNG-SCGDIASCMYGG- 171 (365)
T ss_dssp CCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSSC-CSHHHHHHHHCS-
T ss_pred CCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCC-CcccHHHHhcCC-
Confidence 3568999999999996 6799999999999999999999999999999999999998 88954 459999999985
Q ss_pred CeEEEEe-eC----------------------CCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHH
Q 021052 85 GFAELID-FN----------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVL 141 (318)
Q Consensus 85 g~~~~id-~~----------------------~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l 141 (318)
+++++ +. +..++++++|++ ++++++|++ +++|. .+.+.+
T Consensus 172 --~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~~-~lll~~t~~---~~sT~------------~~~~~v 233 (365)
T 3k17_A 172 --WIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVP-TFSVGWTGT---PVSTG------------KLVSQI 233 (365)
T ss_dssp --EEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCSS-EEEEEECSC---CCCHH------------HHHHHH
T ss_pred --EEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCcc-cEEEEECCC---ccchH------------HHHHHH
Confidence 44443 21 356788888888 999999998 35542 111111
Q ss_pred HHHhCCCchhhhhccccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHH
Q 021052 142 AIKLGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAA 221 (318)
Q Consensus 142 ~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 221 (318)
.+. ++..
T Consensus 234 ~~~---------------~~~~---------------------------------------------------------- 240 (365)
T 3k17_A 234 HAF---------------KQED---------------------------------------------------------- 240 (365)
T ss_dssp HHH---------------HHHC----------------------------------------------------------
T ss_pred HHH---------------HHhC----------------------------------------------------------
Confidence 110 0000
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhhccC------CCccchhhhccHHHHHH
Q 021052 222 KQYKLHQRAAHVYSEA-KRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYEC------SITSSARVHEILISMVT 294 (318)
Q Consensus 222 ~~~~~~~R~~hvi~E~-~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~v------S~pe~~~l~~~~d~lv~ 294 (318)
-.+..|++.|. .++.++.++|+++| ++.||++|+++|++|++ +++ ++|+ + |.|++
T Consensus 241 -----~~~~~~~~~~~~~~~~~~~~aL~~gd-----~~~lg~lm~~~~~~l~~-l~v~~~~~is~p~---l----d~l~~ 302 (365)
T 3k17_A 241 -----SKNYQHFLTRNNEIMKQIIQAFHTKD-----EELLYSSIKENRRILQE-LGTKAGVNIETSL---L----KELAD 302 (365)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHH-HHHHHTCCCSCHH---H----HHHHH
T ss_pred -----hHHHHHHHHHHHHHHHHHHHHHHhCC-----HHHHHHHHHHHHHHHHH-hhhhcCCcccCHH---H----HHHHH
Confidence 01235677775 45789999999999 99999999999999998 777 9999 9 99999
Q ss_pred HHHhCCCCcccccCCCCCceeec
Q 021052 295 IARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 295 ~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+|++.|++ +||||||||||+++
T Consensus 303 ~a~~~Ga~-ak~sGAGgGg~via 324 (365)
T 3k17_A 303 SAENMGGA-GKSSGSGGGDCGIA 324 (365)
T ss_dssp HHHHTTSE-EEECTTCSSSEEEE
T ss_pred HHHhcCCE-EEecCCCCCCEEEE
Confidence 99999998 99999999999874
No 10
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=99.97 E-value=9.3e-31 Score=249.30 Aligned_cols=193 Identities=12% Similarity=0.055 Sum_probs=155.1
Q ss_pred ccCccEEEEEEeCCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCe
Q 021052 10 TKFQLFNHINSLFFNLG---SGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGF 86 (318)
Q Consensus 10 ~~~~G~~i~i~s~IP~g---~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~ 86 (318)
.+.+||++.+.|+||.+ +|||||||++||++.|++++++.++++++++++|+.+|.++|.++|++|++++++|+.
T Consensus 84 ~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~~~~~D~~~~~~Gg~-- 161 (337)
T 2pg9_A 84 QNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLLKRGDNGSMGDLACIAAEDL-- 161 (337)
T ss_dssp CCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCCSCSHHHHHHHHTSC--
T ss_pred CCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCE--
Confidence 35689999999999999 9999999999999999999999999999999999999987777778899999999853
Q ss_pred EEEE---eeC-------------------CCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHH
Q 021052 87 AELI---DFN-------------------PIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIK 144 (318)
Q Consensus 87 ~~~i---d~~-------------------~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~ 144 (318)
+++ +.. +..++++++|+++++++++|++ +++|. .+.+.+.+.
T Consensus 162 -~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~lvl~~~~~---~~~T~------------~~~~~~~~~ 225 (337)
T 2pg9_A 162 -VLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTLECDFLVGWTKE---VAVSS------------HMVQQIKQN 225 (337)
T ss_dssp -EEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCSCCEEEEEECCC---CCCHH------------HHHHHHGGG
T ss_pred -EEEecCChHHhhhhhcccchhhhcccccccceeeecCCCCceEEEEECCC---ccchH------------HHHHHHHHH
Confidence 333 322 2457788888899999999998 35542 111222110
Q ss_pred hCCCchhhhhccccchhhhhhhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHH
Q 021052 145 LGMKPQEAISKVKTLSDVEGLCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQY 224 (318)
Q Consensus 145 ~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 224 (318)
++ ++
T Consensus 226 ---------------~~-------------------------------------------~~------------------ 229 (337)
T 2pg9_A 226 ---------------IN-------------------------------------------QN------------------ 229 (337)
T ss_dssp ---------------CC-------------------------------------------HH------------------
T ss_pred ---------------HH-------------------------------------------HH------------------
Confidence 00 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhHhhhhhc-cCCCccchhhhccHHHHHHHHHhCCCCc
Q 021052 225 KLHQRAAHVYSEAKRVHAFKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLY-ECSITSSARVHEILISMVTIARKPGHTP 303 (318)
Q Consensus 225 ~~~~R~~hvi~E~~Rv~~~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~-~vS~pe~~~l~~~~d~lv~~a~~~Ga~G 303 (318)
...+ + ..++.+++++|.++| ++.||++|+++|+++++.. ++++|+ + |.|++++++.|++
T Consensus 230 -~~~~----~--~~~~~~~~~aL~~~d-----~~~lg~~m~~~~~~l~~l~~~v~~p~---l----~~l~~~a~~~Ga~- 289 (337)
T 2pg9_A 230 -FLTS----S--KETVVSLVEALEQGK-----SEKIIEQVEVASKLLEGLSTDIYTPL---L----RQLKEASQDLQAV- 289 (337)
T ss_dssp -HHHH----H--HHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHHHHCTTTCCHH---H----HHHHHTTTTSSEE-
T ss_pred -HHHH----H--HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHHhcCcCCCHH---H----HHHHHHHHHCCCE-
Confidence 0011 1 345678999999999 9999999999999999764 399999 9 9999999999999
Q ss_pred ccccCCCCCceee
Q 021052 304 PPTTPPPIQSKTK 316 (318)
Q Consensus 304 akltGaG~GG~v~ 316 (318)
+||||||||||++
T Consensus 290 ak~sGaGgGg~vi 302 (337)
T 2pg9_A 290 AKSSGAGGGDCGI 302 (337)
T ss_dssp EEECTTCSSSEEE
T ss_pred EEEeCCCCccEEE
Confidence 9999999999976
No 11
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=99.97 E-value=3.4e-30 Score=241.02 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=153.3
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
..+|++|.+.++||+++|||||||+++|++.|++++++.++++++++++|..+|+ ++|.|+| .|+.++.+| ++++
T Consensus 83 ~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~~~g~~sG-~d~~~~~~g---~~~~ 158 (308)
T 2x7i_A 83 ITEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQIAHGKPSG-IDTQTIVSG---KPVW 158 (308)
T ss_dssp CCSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSSCCH-HHHHHHHHT---SCEE
T ss_pred hCCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHCCCCch-HHHHHhhCC---ceEE
Confidence 3469999999999999999999999999999999999999999999999999998 9999999 588877775 3566
Q ss_pred EeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
++ +...+++++++.++.+++++|++ +++|.. -|+ .+.+ ..+
T Consensus 159 ~~-~g~~~~~~~~~~~~~~vi~~~~~---~~sT~~-~~~-----------~l~~------------------~~~----- 199 (308)
T 2x7i_A 159 FQ-KGHAETLKTLSLDGYMVVIDTGV---KGSTRQ-AVH-----------DVHK------------------LCE----- 199 (308)
T ss_dssp EE-TTEEEECSCCCBSSEEEEEECCC-----CCSC-CCC-----------------------------------------
T ss_pred EE-cCCCceEeccCCCceEEEEECcC---CCCHHH-HHH-----------HHHH------------------HHh-----
Confidence 66 44456677776689999999988 455431 110 0110 000
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
. .+ ..++ +.|+ ..++.++.++|++
T Consensus 200 ------------------~---------------~~-------------------~~~~-~~~~---~~~~~~~~~al~~ 223 (308)
T 2x7i_A 200 ------------------D---------------PQ-------------------YMSH-VKHI---GKLVLRASDVIEH 223 (308)
T ss_dssp ----------------------------------CC-------------------HHHH-HHHH---HHHHHHHHHHHHT
T ss_pred ------------------c---------------Cc-------------------hHHH-HHHH---HHHHHHHHHHHHc
Confidence 0 00 0111 2232 2367788999999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
+| ++.||++|+++|+++++ +++++|+ + |.+++.+++.|++|+||||+|+|||++
T Consensus 224 ~d-----~~~l~~~~~~~~~~~~~-~~~~~p~---l----~~l~~~~~~~Ga~ga~~sGaG~GG~v~ 277 (308)
T 2x7i_A 224 HK-----FEALADIFNECHADLKA-LTVSHDK---I----EQLMKIGKENGAIAGKLTGAGRGGSML 277 (308)
T ss_dssp TC-----HHHHHHHHHHHHHHHHH-HSCCCHH---H----HHHHHHHHHTTCSEEEESBTTTCSSEE
T ss_pred CC-----HHHHHHHHHHHHHHHHH-hCCCCHH---H----HHHHHHHHHCCCcEEEeeccCCCcEEE
Confidence 99 99999999999999998 7999999 9 999999999999999999999999986
No 12
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=99.96 E-value=5e-29 Score=235.77 Aligned_cols=193 Identities=21% Similarity=0.109 Sum_probs=148.5
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~ 89 (318)
..+|++|.+.++||+++|||||||++||++.|++++++.++++++++++|.++|+ ++|.++ ++|++++++|+ +++
T Consensus 94 ~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~-~~D~~~~~~Gg---~~~ 169 (321)
T 4hac_A 94 PINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEIEIKVQGAAS-PTDTYVSTFGG---VVT 169 (321)
T ss_dssp CCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHSCCC-SHHHHHHHHCS---EEE
T ss_pred CCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCc-HHHHHHHHcCC---eEE
Confidence 4579999999999999999999999999999999999999999999999999998 999955 59999999974 555
Q ss_pred EeeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 90 IDFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 90 id~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
+ . . .+++.+| ++++++++|++ +++|. +++...+.+.+. .+
T Consensus 170 ~-~-~--~~~l~~p-~~~~vlv~p~~---~~sT~---------~~~~~~~~l~~~------------------~~----- 209 (321)
T 4hac_A 170 I-P-E--RRKLKTP-DCGIVIGDTGV---FSSTK---------ELVANVRQLRES------------------YP----- 209 (321)
T ss_dssp E-T-T--CCEECCC-CCEEEEEECCC---CCCHH---------HHHHHHHHHHHH------------------CH-----
T ss_pred E-c-C--CceeccC-CCEEEEEECCC---CccHH---------HHHHHHHHHHhc------------------CH-----
Confidence 5 2 1 1234455 79999999998 45553 121111111110 00
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
+ .++.+.+.+.+ .+.++.++|++
T Consensus 210 ------------------------------------~-------------------~~~~~~~~~~~--~~~~~~~al~~ 232 (321)
T 4hac_A 210 ------------------------------------D-------------------LIEPLMTSIGK--ISRIGEQLVLS 232 (321)
T ss_dssp ------------------------------------H-------------------HHHHHHHHHHH--HHHHHHHHHHH
T ss_pred ------------------------------------H-------------------HHHHHHHHHHH--HHHHHHHHHHh
Confidence 0 00111111111 24578889999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+| ++.||++|+++|. +++.+++++|+ + |++++.+++.|++|+||||+|+|||++.
T Consensus 233 ~d-----~~~lg~~~~~~~~-~~~~~~v~~p~---l----~~l~~~a~~~Ga~ga~~SGaG~GG~v~a 287 (321)
T 4hac_A 233 GD-----YASIGRLMNVNQG-LLDALGVNILE---L----SQLIYSARAAGAFGAKITGAGGGGCMVA 287 (321)
T ss_dssp TC-----HHHHHHHHHHHHH-HHHHHTCCCHH---H----HHHHHHHHHTTCSEEEECSSCSSSEEEE
T ss_pred CC-----HHHHHHHHHHHHH-HHhhcCCCCHH---H----HHHHHHHHHCCCCEEEECccCCCCEEEE
Confidence 99 9999999999986 66778999999 9 9999999999999999999999999873
No 13
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=99.96 E-value=8.6e-29 Score=233.81 Aligned_cols=196 Identities=18% Similarity=0.182 Sum_probs=155.2
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEEe
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
+|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|+.+|+ ++|.|+|. |+.++++|+ +++++
T Consensus 96 ~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~G~~~G~-D~~~~~~Gg---~~~~~ 171 (332)
T 2hfs_A 96 DGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGGYHGTPSGA-DNTAATYGG---LILYR 171 (332)
T ss_dssp SEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGGSSSCCCSH-HHHHHHHCE---EEEEE
T ss_pred CceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCcH-hHHHHhcCC---eEEEe
Confidence 68999999999999999999999999999999999999999999999999998 99999995 999999874 55554
Q ss_pred eCC--CeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhh
Q 021052 92 FNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAF 169 (318)
Q Consensus 92 ~~~--~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~ 169 (318)
... ..+.++++|+++++++++|++ +++|. +++++. ..+++..+
T Consensus 172 ~~~g~~~~~~~~~~~~~~~vl~~~~~---~~~T~---------------~~~~~~------------~~~~~~~~----- 216 (332)
T 2hfs_A 172 RQNGKSVFKPIAFQQRLYLVVVGTGI---NASTA---------------KVVNDV------------HKMKQQQP----- 216 (332)
T ss_dssp ECSSSEEEEEECCCSCEEEEEEECSC---CCCHH---------------HHHHHH------------HHHHHHCH-----
T ss_pred cCCCCcceeeecCCCCcEEEEEECCC---CccHH---------------HHHHHH------------HHHHHhCH-----
Confidence 332 257788888889999999998 45552 222211 01111000
Q ss_pred hccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 021052 170 ACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSS 249 (318)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~ 249 (318)
+.+. .+++++.| ++.++.++|++
T Consensus 217 ------------------------~~~~---------------------------~~~~~~~~------~~~~~~~al~~ 239 (332)
T 2hfs_A 217 ------------------------VQFK---------------------------RLYDNYTH------IVSQAREALQK 239 (332)
T ss_dssp ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHH
T ss_pred ------------------------HHHH---------------------------HHHHHHHH------HHHHHHHHHHc
Confidence 0000 12334333 34567889999
Q ss_pred CCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 250 NLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 250 ~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
+| ++.||++|+++|..++. |++++|+ + +.+++.+++.|++|+||||+|+|||++.
T Consensus 240 ~d-----~~~l~~~~~~~~~~l~~-~~~~~p~---l----~~l~~~~~~~Ga~ga~~sGaG~gg~v~~ 294 (332)
T 2hfs_A 240 GD-----LQRLGQLMNANHDLCRQ-IDVSCRE---L----ESIVQTCRTYGALGAKLSGTGRGGIAVA 294 (332)
T ss_dssp TC-----HHHHHHHHHHHHHHHHH-TTCCCHH---H----HHHHHHHHHTTCSEEEEESSCSSSEEEE
T ss_pred CC-----HHHHHHHHHHHHHHHHH-cCCCCHH---H----HHHHHHHHHcCCceEEeccCCCCcEEEE
Confidence 99 99999999999988876 6899999 9 9999999999999999999999999863
No 14
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=99.96 E-value=6.6e-29 Score=229.98 Aligned_cols=191 Identities=15% Similarity=0.100 Sum_probs=146.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i 90 (318)
.+|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|.++|+ .+|.|+| +|++++++|+ ++++
T Consensus 72 ~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~~~p~g-~d~~~~~~gg---~~~~ 147 (292)
T 2oi2_A 72 EACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAHMNPSG-LDAKTCLSDQ---PIRF 147 (292)
T ss_dssp CCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTCCCCS-HHHHHHTCSS---CEEE
T ss_pred CCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCCc-hhHHHHhcCc---eEEE
Confidence 468999999999999999999999999999999999999999999999999998 8899999 5999999874 4444
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
.+....++++++....++++++++ +++|. .+.+.+.+.. +
T Consensus 148 -~~~~~~~~~~~~~~~~~~i~~~~~---~~sT~------------~~~~~l~~~~------------------~------ 187 (292)
T 2oi2_A 148 -IKNVGFTELEMDLSAYLVIADTGV---YGHTR------------EAIQVVQNKG------------------K------ 187 (292)
T ss_dssp -ETTTEEEECCCCCSCEEEEEECSS---CCCHH------------HHHHHHHHTG------------------G------
T ss_pred -EcCCCceeecCCCCCEEEEEECCC---CCcHH------------HHHHHHHHHH------------------h------
Confidence 344456666654333488999987 35542 1112222110 0
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
. .++..|.+.+ .+.++.++|+++
T Consensus 188 -----------------------------------~--------------------~~~~~~~~~~--~~~~~~~al~~~ 210 (292)
T 2oi2_A 188 -----------------------------------D--------------------ALPFLHALGE--LTQQAEIAISQK 210 (292)
T ss_dssp -----------------------------------G--------------------GHHHHHHHHH--HHHHHHHHHHTT
T ss_pred -----------------------------------h--------------------hHHHHHHHHH--HHHHHHHHHHcC
Confidence 0 0112233332 256788899999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
| ++.||++|+++|..+++ +++++|+ + |++++.+++.|++|+||||+|+|||++
T Consensus 211 d-----~~~l~~~~~~~~~~l~~-~~~~~p~---l----~~l~~~~~~~Ga~ga~~sGaG~Gg~v~ 263 (292)
T 2oi2_A 211 D-----AEGLGQILSQAHLHLKE-IGVSSLE---A----DSLVETALSHGALGAKMSGGGLGGCII 263 (292)
T ss_dssp C-----HHHHHHHHHHHHHHHHH-TTCCCHH---H----HHHHHHHHTTTCSEEEEESSSSSSEEE
T ss_pred C-----HHHHHHHHHHHHHHHHh-cCCCcHH---H----HHHHHHHHhCCCceeeeccCCCCcEEE
Confidence 9 99999999999999987 6999999 9 999999999999999999999999986
No 15
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=99.95 E-value=2.8e-27 Score=222.12 Aligned_cols=185 Identities=18% Similarity=0.142 Sum_probs=143.0
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccceeeeeccCCeEEEE
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQAISIMAKSGFAELI 90 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~~~~~G~~g~~~~i 90 (318)
.+|++|.+.++||.++|||||||+++|++.|++++++.++++++++++|..+|+ ++|.++| +|+.++++|+ ++++
T Consensus 97 ~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~~~g~~sg-~D~~~~~~Gg---~~~~ 172 (317)
T 1kkh_A 97 KTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEKEIQGKASI-TDTSTITYKG---ILEI 172 (317)
T ss_dssp CSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSSSCCS-HHHHHHHHCS---EEEE
T ss_pred CCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCCch-HHHHHHHhCC---eEEE
Confidence 479999999999999999999999999999999999999999999999999998 9999988 8999999983 3444
Q ss_pred eeCCCeEEEeecC--C----CcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhh
Q 021052 91 DFNPIRTTDVQLP--A----GGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEG 164 (318)
Q Consensus 91 d~~~~~~~~~~~~--~----~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~ 164 (318)
++...++++++ + ++.+++++|++ +++|. +.+ +.+.+ +++. +
T Consensus 173 --~~~~~~~~~~~~~~~l~~~~~~vl~~~~~---~~~T~---------~~~---~~~~~---------------~~~~-~ 219 (317)
T 1kkh_A 173 --KNNKFRKIKGEFEEFLKNCKFLIVYAEKR---KKKTA---------ELV---NEVAK---------------IENK-D 219 (317)
T ss_dssp --SSSCEEEECHHHHHHHHTCCEEEEEEECC---CSCHH---------HHH---HHHHT---------------CTTH-H
T ss_pred --cCCCceEecCCcccccccCcEEEEEECCC---cCcHH---------HHH---HHHHH---------------hhcc-H
Confidence 34456666643 1 25899999998 35542 111 11110 0100 0
Q ss_pred hhhhhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 021052 165 LCVAFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFK 244 (318)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~ 244 (318)
..+.+..+ ...
T Consensus 220 -------------------------------------------------------------------~~~~~~~~--~~~ 230 (317)
T 1kkh_A 220 -------------------------------------------------------------------EIFKEIDK--VID 230 (317)
T ss_dssp -------------------------------------------------------------------HHHHHHHH--HHH
T ss_pred -------------------------------------------------------------------HHHHHHHH--HHH
Confidence 00111111 134
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceee
Q 021052 245 DTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTK 316 (318)
Q Consensus 245 ~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~ 316 (318)
++++.+| ++.||++|+++|..+++ +++++|+ + |++++.+++.| +|+||||+|+|||++
T Consensus 231 ~a~~~~d-----~~~l~~~~~~~~~~~~~-~~~~~p~---l----~~~~~~~~~~G-~ga~~sGaG~GG~v~ 288 (317)
T 1kkh_A 231 EALKIKN-----KEDFGKLMTKNHELLKK-LNISTPK---L----DRIVDIGNRFG-FGAKLTGAGGGGCVI 288 (317)
T ss_dssp HHHHCCS-----HHHHHHHHHHHHHHHHT-TTCCCHH---H----HHHHHHHHHHS-SEEEECSSSSSEEEE
T ss_pred HHHHcCC-----HHHHHHHHHHHHHHHHh-cCCCCHH---H----HHHHHHHHhcC-ceeEEeecCCCCEEE
Confidence 5666788 99999999999988776 7999999 9 99999999989 999999999999986
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.93 E-value=7.4e-26 Score=210.24 Aligned_cols=187 Identities=12% Similarity=0.080 Sum_probs=148.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HhCCCCCcccce-eeeeccCCeEEEE
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQ-FIGTQSGGMDQA-ISIMAKSGFAELI 90 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~-~~G~~~G~~D~~-~~~~G~~g~~~~i 90 (318)
+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|.++|. ++|.|++ |+. ++++|+ .+++.
T Consensus 75 ~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g~~~~--ddv~~~~~gg--~~~~~ 150 (296)
T 1h72_C 75 KGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSGAKHA--DNVAPAIFGG--FTMVT 150 (296)
T ss_dssp CEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHSSCCC--TTHHHHHHCS--EEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccCCCCc--cchHHHHhCC--EEEEE
Confidence 58999999999999999999999999999999999999999999999999998 9999986 554 478873 45454
Q ss_pred eeCCCeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 91 DFNPIRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 91 d~~~~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
+..+..+.++++|+++++++++|++ +.+|. .+.+. +.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~vl~~p~~---~~~T~------------~~~~~------------------l~~~-------- 189 (296)
T 1h72_C 151 NYEPLEVLHIPIDFKLDILIAIPNI---SINTK------------EAREI------------------LPKA-------- 189 (296)
T ss_dssp ETTTTEEEEECCCSCCCEEEECCSS---CCCHH------------HHHHT------------------SCSC--------
T ss_pred eCCceEEEEEcCCCCeEEEEEeCCC---CccHH------------HHHHh------------------ccCc--------
Confidence 5555668888888889999999987 23331 11010 0000
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
.+..|.+.+..|+.++.++|.++
T Consensus 190 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~al~~~ 212 (296)
T 1h72_C 190 ---------------------------------------------------------VGLKDLVNNVGKACGMVYALYNK 212 (296)
T ss_dssp ---------------------------------------------------------CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred ---------------------------------------------------------CcHHHHHHHHHHHHHHHHHHHcC
Confidence 00135566667788899999999
Q ss_pred CCchHHHHHHHHHH--HHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLM--NDSHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm--~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
| ++.||++| |+.|++++. +++|+ + +.+++.+++. ++|+||||+|+....++
T Consensus 213 d-----~~~~~~~~~~n~~h~~~~~---~~~p~---l----~~~~~~~~~~-a~ga~~sGsG~~v~~l~ 265 (296)
T 1h72_C 213 D-----KSLFGRYMMSDKVIEPVRG---KLIPN---Y----FKIKEEVKDK-VYGITISGSGPSIIAFP 265 (296)
T ss_dssp C-----HHHHHHHHTTCCSSHHHHH---TTSTT---H----HHHHHHHTTT-EEEEEECTTSSCEEEEE
T ss_pred C-----HHHHHHHHhcCcchhhhhh---ccCcc---H----HHHHHHHHhh-cceEEEecCChheEEEe
Confidence 9 99999999 778888874 68999 9 9999999988 89999999999544443
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.82 E-value=5.8e-20 Score=172.05 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=124.8
Q ss_pred cCccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccce-eeeeccCCeEEE
Q 021052 11 KFQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQA-ISIMAKSGFAEL 89 (318)
Q Consensus 11 ~~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~-~~~~G~~g~~~~ 89 (318)
..+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|..+|- . .|+. .+++|+ +.+
T Consensus 68 ~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg---~----~ddv~~~~~GG---~~~ 137 (298)
T 3hul_A 68 NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEG---H----PDNVAPAVLGN---WVV 137 (298)
T ss_dssp TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHS---C----STTHHHHHHCS---EEE
T ss_pred cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC---C----cccCcccccCC---EEE
Confidence 3579999999999999999999999999999999999999999999999999992 1 2333 344543 222
Q ss_pred EeeCC--CeEEEeecCCCcEEEEEEcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhh
Q 021052 90 IDFNP--IRTTDVQLPAGGTFVVAHSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCV 167 (318)
Q Consensus 90 id~~~--~~~~~~~~~~~~~~vl~~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~ 167 (318)
...+. ..+.++++| ++++++++++.. .+|. .+.+.+.+. .+
T Consensus 138 ~~g~ge~~~~~~~~~p-~~~~vlv~p~~~---~sT~------------~a~~~l~~~------------------~~--- 180 (298)
T 3hul_A 138 GAKLDGEDFYVRHLFP-DCALIAFIPKAE---LLTS------------ESRGVLPDT------------------LP--- 180 (298)
T ss_dssp EEEETTEEEEEEECCC--CEEEEEECCCC---CC--------------------CCE------------------EE---
T ss_pred EEeCCCcEEEEEcCCC-CeEEEEEECCCC---CCcH------------HHHHHHhhh------------------cc---
Confidence 22222 233466655 589999999772 3332 111111100 00
Q ss_pred hhhccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 021052 168 AFACKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTV 247 (318)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al 247 (318)
+. ..+.+..|+..+..+|
T Consensus 181 -----------------------------------------------------------~~---~~~~~~~~~~~~~~al 198 (298)
T 3hul_A 181 -----------------------------------------------------------FK---EAVQASSIANVMIAAI 198 (298)
T ss_dssp -----------------------------------------------------------HH---HHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------HH---HHHHHHHHHHHHHHHH
Confidence 00 0122234566788999
Q ss_pred hcCCCchHHHHHHHHHHHH--HhHhhhhhccCCCccchhhhccHHHHHHHHHhCCCCcccccCCCCCceeec
Q 021052 248 SSNLSEEDKLKKLGDLMND--SHHSCSVLYECSITSSARVHEILISMVTIARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 248 ~~~d~~~~~~~~lG~Lm~~--sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
.++| ++.||++|+. .|+.++..+ +|+ + +++++.+++.|++|++|||+|.....+|
T Consensus 199 ~~~d-----~~~l~~~l~nd~~~e~~~~~~---~p~---l----~~l~~~~~~~Ga~ga~~SGsGptv~al~ 255 (298)
T 3hul_A 199 LRND-----MTLAGEMMERDLWHEKYRSQL---VPH---L----AQIRDVAKNQGAYAACLSGAGPTVLVFA 255 (298)
T ss_dssp TTTC-----HHHHHHHHTCCCC-----CTT---GGG---H----HHHHHHHHTTTCCEEEECTTSSCEEEEE
T ss_pred HcCC-----HHHHHHHHhhhHHHHHHHHhh---Cch---H----HHHHHHHHHCCCEEEEEeccchheEEEE
Confidence 9999 9999999973 477777543 899 9 9999999999999999999997555444
No 18
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.80 E-value=9.4e-19 Score=164.43 Aligned_cols=193 Identities=13% Similarity=0.078 Sum_probs=125.7
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||.++|||||||.+||++.|+++++|.++++++++++|..+|- .+ ..+++|+ ++.+..
T Consensus 91 ~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G---~~------~~~~~GG---~~~~~~ 158 (317)
T 2gs8_A 91 AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASG---SS------SRSFFGP---VAAWDK 158 (317)
T ss_dssp CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG---GG------GGGGSCS---EEEECT
T ss_pred CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc---hh------HhhhcCC---hheEee
Confidence 68999999999999999999999999999999999999999999999988762 22 2234432 222222
Q ss_pred CCCeEEEeecCCCcEEEEE--EcCCcccccccccccchhHHHHHHHHHHHHHHHhCCCchhhhhccccchhhhhhhhhhh
Q 021052 93 NPIRTTDVQLPAGGTFVVA--HSLAESLKAITAASNYNNRVVECRLTAIVLAIKLGMKPQEAISKVKTLSDVEGLCVAFA 170 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~--~sg~~~~k~~~~~~~yn~r~~e~~~aa~~l~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~ 170 (318)
+.......++|.++.++++ +++. ++......|+ +.+.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~v~i~~~~~---~~~~tt~~~~----------~~~~~~-------------------------- 199 (317)
T 2gs8_A 159 DSGAIYKVETDLKMAMIMLVLNAAK---KPISSREGMK----------LCRDTS-------------------------- 199 (317)
T ss_dssp TTCCEEECCCCCCEEEEEEECCCSS---CCSCHHHHHH----------HHHHHC--------------------------
T ss_pred CCCceeEEEccccccEEEEEEECCC---cCcccHHHHH----------HHhhcC--------------------------
Confidence 2233344455556664433 5544 2322111111 011110
Q ss_pred ccCCCCChhHHHHHhhhcCCCCHHHHHHHhhhhhhhhhhccCChhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 021052 171 CKNGSSDPVFAVKEFLRKEPYTALDIEKITEEKLTSIFANSSSSLDVLNAAKQYKLHQRAAHVYSEAKRVHAFKDTVSSN 250 (318)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~hvi~E~~Rv~~~~~al~~~ 250 (318)
. ...+++.|. ..|+.+++.+|.++
T Consensus 200 -----------------------------------~------------------~~~~~~~~~---~~~~~~~~~al~~~ 223 (317)
T 2gs8_A 200 -----------------------------------T------------------TFDQWVEQS---AIDYQHMLTYLKTN 223 (317)
T ss_dssp -----------------------------------T------------------THHHHHHHH---HHHHHHHHHHHHTT
T ss_pred -----------------------------------H------------------HHHHHHHHH---HHHHHHHHHHHHcC
Confidence 0 011223332 45788899999999
Q ss_pred CCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHH---HHHhCCCCcccccCCCCCceeec
Q 021052 251 LSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVT---IARKPGHTPPPTTPPPIQSKTKF 317 (318)
Q Consensus 251 d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~---~a~~~Ga~GakltGaG~GG~v~~ 317 (318)
| ++.||++|+++|..|.+.|..++|+-+.+......+.+ .+++.|+.++.|+|+|-.-++++
T Consensus 224 d-----~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaGptv~~l~ 288 (317)
T 2gs8_A 224 N-----FEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAGPNVKVLC 288 (317)
T ss_dssp C-----HHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSSSCEEEEE
T ss_pred C-----HHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCCCeEEEEE
Confidence 9 99999999999999999888887771111111134444 33448988999998886554443
No 19
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.76 E-value=1.3e-18 Score=163.46 Aligned_cols=91 Identities=13% Similarity=0.130 Sum_probs=77.4
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|.++| .|...+++|+ +.+...
T Consensus 87 ~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~---------~Dv~~~~~Gg---~~~~~g 154 (306)
T 3pyf_A 87 PDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG---------SDVPFALHGG---TALGTG 154 (306)
T ss_dssp CCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC---------TTHHHHHHBS---EEEECS
T ss_pred CCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC---------CCCceeecCc---eEEEEe
Confidence 5899999999999999999999999999999999999999999999999987 2666666663 344443
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+...+.+++.++++++++++|++
T Consensus 155 ~ge~~~~l~~~~~~~~vl~~P~~ 177 (306)
T 3pyf_A 155 RGEELATVLSRNTFHWVLAFADS 177 (306)
T ss_dssp SSSCCEEECCSSCEEEEEEECSS
T ss_pred eCCeEEEccCCCCcEEEEEECCC
Confidence 44456788887889999999987
No 20
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.71 E-value=1.2e-17 Score=153.83 Aligned_cols=91 Identities=9% Similarity=0.044 Sum_probs=73.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|.++|. +.|+.++++++...|
T Consensus 80 ~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e~--dv~~~~~gg~~~~~g---------- 147 (271)
T 2v8p_A 80 INYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSISA--DAPFFLLGKSAIGRG---------- 147 (271)
T ss_dssp CCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHCT--TTGGGGTCSEEEEET----------
T ss_pred CCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC--CHHHHhcCCeEEEEE----------
Confidence 68999999999999999999999999999999999999999999999999984 444444444443332
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+...++++++|.++++++++|++
T Consensus 148 ~g~~~~~l~~~~~~~~vl~~p~~ 170 (271)
T 2v8p_A 148 KGEVLEPVETEISGKITLVIPQV 170 (271)
T ss_dssp TTTEEEECCCCCCSEEEEEECSS
T ss_pred cCCEEEEccCCCCcEEEEEeCCC
Confidence 22345666644489999999987
No 21
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.68 E-value=9.5e-16 Score=145.53 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=68.8
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|.++| | |-..+++|+ .+++...
T Consensus 93 ~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~-------g--~~~~~~~GG--~~~~~~g 161 (332)
T 3qt5_A 93 LHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS-------G--SASRSIFGG--FAEWEKG 161 (332)
T ss_dssp CEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC-------G--GGGGGGSCS--EEEEECC
T ss_pred CCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc-------C--CchhhhcCC--eEEEecC
Confidence 5899999999999999999999999999999999999999999999999985 2 334456653 2332221
Q ss_pred CC---CeEEEee---cCCCcEEEEEEcCC
Q 021052 93 NP---IRTTDVQ---LPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~---~~~~~~~---~~~~~~~vl~~sg~ 115 (318)
.. ....+++ .+++++++++.+..
T Consensus 162 ~~~~~~~~~~l~~~~~~~~l~~vv~vp~~ 190 (332)
T 3qt5_A 162 HDDLTSYAHGINSNGWEKDLSMIFVVINN 190 (332)
T ss_dssp SSTTTCEEEEECCTTGGGGEEEEEECCCC
T ss_pred CCCccceeeecccccCCCCcEEEEEEEcC
Confidence 11 1235554 33578887776654
No 22
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.64 E-value=3.5e-15 Score=145.67 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=50.6
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECE 64 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E 64 (318)
..|++|.+.++||.++|||||||.++|++.|+++++|.++++++++++|...+
T Consensus 121 ~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eLa~lA~~g~ 173 (416)
T 1fi4_A 121 QWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGS 173 (416)
T ss_dssp GSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHH
T ss_pred CCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhccC
Confidence 46899999999999999999999999999999999999999999999998875
No 23
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.62 E-value=1.3e-16 Score=147.02 Aligned_cols=87 Identities=15% Similarity=0.051 Sum_probs=70.5
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
+|++|.+.++||.++|||||||.++|++.|++++++.++ +++++|..+|. |..++++|+ +.+...
T Consensus 75 ~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~---------dv~~~~~Gg---~~~~~g 139 (275)
T 1uek_A 75 GGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGA---------DVPFFLLGR---GAEARG 139 (275)
T ss_dssp CEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCT---------THHHHHHCS---EEEEET
T ss_pred CCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCC---------ChHHHhcCC---eEEEEc
Confidence 689999999999999999999999999999999999988 88999988862 555555552 333333
Q ss_pred CCCeEEEeecCCCcEEEEEEcCC
Q 021052 93 NPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 93 ~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
+...+++++ ++++++++++|++
T Consensus 140 ~g~~~~~l~-~~~~~~vl~~p~~ 161 (275)
T 1uek_A 140 VGERLKPLA-LPPVPAVVFFPGL 161 (275)
T ss_dssp TTTEEEEEC-CCCEEEEEEECCC
T ss_pred cCceeEEcc-CCCcEEEEEeCCC
Confidence 334566777 6689999999987
No 24
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.54 E-value=9.9e-14 Score=131.10 Aligned_cols=53 Identities=28% Similarity=0.147 Sum_probs=49.2
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHH
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSST----VALMAAFGVEV-PKKEIAQLTCECE 64 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~----~Al~~l~g~~l-s~~ela~la~~~E 64 (318)
..|++|.+.++||.++|||||||..||++ .|+++++|.++ +++|+.++|..++
T Consensus 90 ~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs 147 (323)
T 3lto_A 90 VGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS 147 (323)
T ss_dssp CCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC
T ss_pred CCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC
Confidence 35899999999999999999999999999 99999999999 9999999996553
No 25
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.53 E-value=2.6e-15 Score=139.27 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=71.1
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEe
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELID 91 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id 91 (318)
.+|++|.+.++||.++|||||||.++|++.|++++++.++++++++++|.++|. |..++++|+ +.+..
T Consensus 87 ~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~la~~~e~---------dv~~~~~gg---~~~~~ 154 (283)
T 2ww4_A 87 GSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGA---------DVPVFVRGH---AAFAE 154 (283)
T ss_dssp TCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTCT---------THHHHHHTB---CEEEE
T ss_pred CCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC---------CHHHhhcCC---eEEEE
Confidence 368999999999999999999999999999999999999999999999999884 444444432 22222
Q ss_pred eCCCeEEEeecCCCcEEEEEEcCC
Q 021052 92 FNPIRTTDVQLPAGGTFVVAHSLA 115 (318)
Q Consensus 92 ~~~~~~~~~~~~~~~~~vl~~sg~ 115 (318)
......+++++| ++.+++++|++
T Consensus 155 g~g~~~~~l~~~-~~~~vl~~p~~ 177 (283)
T 2ww4_A 155 GVGEILTPVDPP-EKWYLVAHPGV 177 (283)
T ss_dssp TTTTEEEECCCC-CCEEEEECCSC
T ss_pred ecCccceEcCCC-CcEEEEEeCCC
Confidence 223345566655 78999999987
No 26
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.40 E-value=6e-12 Score=121.31 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=50.9
Q ss_pred CccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeecc
Q 021052 12 FQLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAK 83 (318)
Q Consensus 12 ~~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~ 83 (318)
..|++|.+.++||.++|||||||..||++.|+++++|.+ ++++++|...+ | +...|+||+
T Consensus 95 ~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~lA~~g~-------G--sva~s~~GG 154 (380)
T 2hke_A 95 NKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSMLARLGS-------G--SACRSAFGG 154 (380)
T ss_dssp TCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHHHHHHHC-------G--GGGGGGSSS
T ss_pred CCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHHHHhhcC-------c--ceeeehhCC
Confidence 468999999999999999999999999999999999977 78899887664 2 334567763
No 27
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.34 E-value=1.5e-11 Score=119.19 Aligned_cols=87 Identities=15% Similarity=0.135 Sum_probs=61.3
Q ss_pred ccEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCcccceeeeeccCCeEEEEee
Q 021052 13 QLFNHINSLFFNLGSGLSSSTAFVCSSTVALMAAFGVEVPKKEIAQLTCECEQFIGTQSGGMDQAISIMAKSGFAELIDF 92 (318)
Q Consensus 13 ~G~~i~i~s~IP~g~GLGSSAAl~VA~~~Al~~l~g~~ls~~ela~la~~~E~~~G~~~G~~D~~~~~~G~~g~~~~id~ 92 (318)
.|++|.+.++||.++|||||||..+|++.|++++++. ++++.++|..++ | +-..|+||+ .+++...
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s-------G--s~~~s~~GG--~v~w~~~ 187 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS-------G--SACRSLYGG--FVEWQMG 187 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC-------G--GGGGGGSSS--EEEECCC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC-------C--CcchHhhCC--EEEEEec
Confidence 5899999999999999999999999999999999997 367888887664 2 224466763 2333222
Q ss_pred C-----CCeEEEeecC---CCcEEEEEEc
Q 021052 93 N-----PIRTTDVQLP---AGGTFVVAHS 113 (318)
Q Consensus 93 ~-----~~~~~~~~~~---~~~~~vl~~s 113 (318)
. +....+++.+ +++.++++..
T Consensus 188 ~~~d~~ds~a~~i~~~~~wp~L~ivvlv~ 216 (414)
T 3f0n_A 188 EQADGKDSIARQIAPEWHWPQLRILILVV 216 (414)
T ss_dssp SCTTCTTCCEEEEECTTSCTTEEEEEEEE
T ss_pred cCCCCCceEEEEcccccCCCCceEEEEEe
Confidence 1 1223455532 4677776663
No 28
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=22.11 E-value=38 Score=25.11 Aligned_cols=53 Identities=9% Similarity=0.103 Sum_probs=38.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHhHhhhhhccCCCccchhhhccHHHHHHHHHhCC-CCccccc
Q 021052 243 FKDTVSSNLSEEDKLKKLGDLMNDSHHSCSVLYECSITSSARVHEILISMVTIARKPG-HTPPPTT 307 (318)
Q Consensus 243 ~~~al~~~d~~~~~~~~lG~Lm~~sh~slr~~~~vS~pe~~~l~~~~d~lv~~a~~~G-a~Gaklt 307 (318)
+..+|++.. +..+|+|+..+...|.+.-+..-.. + ++|.+...+.| .+|..+.
T Consensus 23 a~NcLkrag-----I~Tv~dL~~~se~dLlki~n~G~KS---l----~EI~~~L~~~GL~~gm~l~ 76 (86)
T 3k4g_A 23 SANCLXAEA-----IHYIGDLVQRTEVELLXTPNLGXXS---L----TEIXDVLASRGLSLGMRLE 76 (86)
T ss_dssp HHHHHHHTT-----CCBHHHHHHSCHHHHHTSTTCCHHH---H----HHHHHHHHTTTCCSSCCEE
T ss_pred HHHHHHHcC-----CCcHHHHHhCCHHHHhhccccCccc---H----HHHHHHHHHcCCCcCCCcc
Confidence 455677766 8889999998887777655556666 7 88888888887 4565554
No 29
>1hpi_A High potential iron sulfur protein; electron transfer(iron-sulfur protein); 1.80A {Ectothiorhodospira shaposhnikovii} SCOP: g.35.1.1
Probab=20.84 E-value=20 Score=25.63 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=10.0
Q ss_pred cCCCCCceeecC
Q 021052 307 TPPPIQSKTKFP 318 (318)
Q Consensus 307 tGaG~GG~v~~~ 318 (318)
.|.+||||.+||
T Consensus 44 ~~~~~g~C~if~ 55 (71)
T 1hpi_A 44 SAQDWGPCSVFP 55 (71)
T ss_dssp TCSSEEEBTTST
T ss_pred CCCCcccccccc
Confidence 567899999987
Done!